Title: Create Interface for 'RBMI' and 'tern'
Description: 'RBMI' implements standard and reference based multiple
imputation methods for continuous longitudinal endpoints (Gower-Page
et al. (2022) <doi:10.21105/joss.04251>). This package provides an
interface for 'RBMI' uses the 'tern'
<https://cran.r-project.org/package=tern> framework by Zhu et al.
(2023) and tabulate results easily using 'rtables'
<https://cran.r-project.org/package=rtables> by Becker et al. (2023).
Author: Joe Zhu [aut, cre] ,
Jana Stoilova [aut],
F. Hoffmann-La Roche AG [cph, fnd]
Maintainer: Joe Zhu <joe.zhu@roche.com>
Diff between tern.rbmi versions 0.1.4 dated 2024-11-26 and 0.1.5 dated 2025-03-06
DESCRIPTION | 33 ++++++++++--------- MD5 | 22 ++++++------- NEWS.md | 4 ++ README.md | 9 ++--- build/vignette.rds |binary data/rbmi_test_data.rda |binary inst/WORDLIST | 11 +++--- inst/doc/tern-rbmi.R | 6 +-- inst/doc/tern-rbmi.Rmd | 4 +- inst/doc/tern-rbmi.html | 79 ++++++++++++++++++++++++----------------------- man/tern.rbmi-package.Rd | 2 - vignettes/tern-rbmi.Rmd | 4 +- 12 files changed, 93 insertions(+), 81 deletions(-)
Title: Comparison Functions for Clustering and Record Linkage
Description: Implements functions for comparing strings, sequences and
numeric vectors for clustering and record linkage applications.
Supported comparison functions include: generalized edit distances
for comparing sequences/strings, Monge-Elkan similarity for fuzzy
comparison of token sets, and L-p distances for comparing numeric
vectors. Where possible, comparison functions are implemented in
C/C++ to ensure good performance.
Author: Neil Marchant [aut, cre]
Maintainer: Neil Marchant <ngmarchant@gmail.com>
Diff between comparator versions 0.1.2 dated 2022-03-16 and 0.1.3 dated 2025-03-06
comparator-0.1.2/comparator/src/Makevars |only comparator-0.1.3/comparator/DESCRIPTION | 8 ++++---- comparator-0.1.3/comparator/MD5 | 7 +++---- comparator-0.1.3/comparator/NEWS.md | 3 +++ comparator-0.1.3/comparator/src/Jaro.h | 2 +- 5 files changed, 11 insertions(+), 9 deletions(-)
Title: Bayesian Hierarchical Analysis of Cognitive Models of Choice
Description: Fit Bayesian (hierarchical) cognitive models
using a linear modeling language interface using particle Metropolis Markov
chain Monte Carlo sampling with Gibbs steps. The diffusion decision model (DDM),
linear ballistic accumulator model (LBA), racing diffusion model (RDM), and the lognormal
race model (LNR) are supported. Additionally, users can specify their own likelihood
function and/or choose for non-hierarchical
estimation, as well as for a diagonal, blocked or full multivariate normal
group-level distribution to test individual differences. Prior specification
is facilitated through methods that visualize the (implied) prior.
A wide range of plotting functions assist in assessing model convergence and
posterior inference. Models can be easily evaluated using functions
that plot posterior predictions or using relative model comparison metrics
such as information criteria or Bayes factors.
References: Stevenson et al. (2024) <doi:10.31234/osf.io/2e4dq>.
Author: Niek Stevenson [aut, cre] ,
Michelle Donzallaz [aut],
Andrew Heathcote [aut],
Steven Miletic [ctb],
Raphael Hartmann [ctb],
Karl C. Klauer [ctb],
Steven G. Johnson [ctb],
Jean M. Linhart [ctb],
Brian Gough [ctb],
Gerard Jungman [ctb],
Rudolf Schuerer [...truncated...]
Maintainer: Niek Stevenson <niek.stevenson@gmail.com>
Diff between EMC2 versions 2.1.0 dated 2024-10-14 and 3.0.0 dated 2025-03-06
EMC2-2.1.0/EMC2/R/IS2.R |only EMC2-2.1.0/EMC2/R/variant_lm.R |only EMC2-2.1.0/EMC2/man/mapped_par.Rd |only EMC2-2.1.0/EMC2/man/plot_defective_density.Rd |only EMC2-2.1.0/EMC2/man/plot_fit.Rd |only EMC2-2.1.0/EMC2/man/plot_prior.Rd |only EMC2-2.1.0/EMC2/man/posterior_summary.Rd |only EMC2-2.1.0/EMC2/man/sampled_p_vector.Rd |only EMC2-2.1.0/EMC2/src/log_likelihood_race.cpp |only EMC2-2.1.0/EMC2/tests/testthat/_snaps/plot_defective_density |only EMC2-2.1.0/EMC2/tests/testthat/_snaps/plot_fit/cdfs-plot-fit.svg |only EMC2-2.1.0/EMC2/tests/testthat/test-plot_defective_density.R |only EMC2-3.0.0/EMC2/DESCRIPTION | 10 EMC2-3.0.0/EMC2/MD5 | 273 +- EMC2-3.0.0/EMC2/NAMESPACE | 49 EMC2-3.0.0/EMC2/NEWS.md | 27 EMC2-3.0.0/EMC2/R/EMC2-package.R | 6 EMC2-3.0.0/EMC2/R/MRI.R |only EMC2-3.0.0/EMC2/R/RcppExports.R | 52 EMC2-3.0.0/EMC2/R/SBC.R | 33 EMC2-3.0.0/EMC2/R/bridge_sampling.R | 28 EMC2-3.0.0/EMC2/R/data.R | 13 EMC2-3.0.0/EMC2/R/define_variants.R |only EMC2-3.0.0/EMC2/R/design.R | 860 +++++---- EMC2-3.0.0/EMC2/R/design_plot.R |only EMC2-3.0.0/EMC2/R/factor_analysis.R | 2 EMC2-3.0.0/EMC2/R/fitting.R | 591 +++--- EMC2-3.0.0/EMC2/R/get_type_objects.R | 58 EMC2-3.0.0/EMC2/R/joint.R | 7 EMC2-3.0.0/EMC2/R/likelihood.R | 36 EMC2-3.0.0/EMC2/R/make_data.R | 60 EMC2-3.0.0/EMC2/R/map.R | 438 +++- EMC2-3.0.0/EMC2/R/model_DDM.R | 75 EMC2-3.0.0/EMC2/R/model_LBA.R | 30 EMC2-3.0.0/EMC2/R/model_LNR.R | 18 EMC2-3.0.0/EMC2/R/model_RDM.R | 22 EMC2-3.0.0/EMC2/R/model_SDT.R | 4 EMC2-3.0.0/EMC2/R/objects.R | 91 EMC2-3.0.0/EMC2/R/plot_data.R |only EMC2-3.0.0/EMC2/R/plotting.R | 391 ---- EMC2-3.0.0/EMC2/R/priors.R | 330 +++ EMC2-3.0.0/EMC2/R/s3_funcs.R | 348 ++- EMC2-3.0.0/EMC2/R/sampling.R | 933 ++++------ EMC2-3.0.0/EMC2/R/statistics.R | 105 - 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EMC2-3.0.0/EMC2/src/model_DDM.h | 35 EMC2-3.0.0/EMC2/src/model_LBA.h | 81 EMC2-3.0.0/EMC2/src/model_MRI.h |only EMC2-3.0.0/EMC2/src/model_RDM.h | 30 EMC2-3.0.0/EMC2/src/model_fMRI.h | 14 EMC2-3.0.0/EMC2/src/model_lnr.h | 31 EMC2-3.0.0/EMC2/src/mri.cpp |only EMC2-3.0.0/EMC2/src/particle_ll.cpp |only EMC2-3.0.0/EMC2/src/trend.h |only EMC2-3.0.0/EMC2/src/utility_functions.h | 428 ++++ EMC2-3.0.0/EMC2/tests/testthat/_snaps/Linux/fit.md | 22 EMC2-3.0.0/EMC2/tests/testthat/_snaps/Linux/variant_funs.md | 86 EMC2-3.0.0/EMC2/tests/testthat/_snaps/S3 |only EMC2-3.0.0/EMC2/tests/testthat/_snaps/S3.md |only EMC2-3.0.0/EMC2/tests/testthat/_snaps/compare.md | 8 EMC2-3.0.0/EMC2/tests/testthat/_snaps/customLL.md |only EMC2-3.0.0/EMC2/tests/testthat/_snaps/joint.md |only EMC2-3.0.0/EMC2/tests/testthat/_snaps/make_design.md | 6 EMC2-3.0.0/EMC2/tests/testthat/_snaps/make_emc.md | 39 EMC2-3.0.0/EMC2/tests/testthat/_snaps/model_functions.md | 280 +-- EMC2-3.0.0/EMC2/tests/testthat/_snaps/pairs_posterior/pairs-plot.svg | 851 ++++----- EMC2-3.0.0/EMC2/tests/testthat/_snaps/plot_chains/chain-plots.svg | 109 - 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Title: R Library for Spatial Data Analysis
Description: Provides spatial data analysis functionalities including Exploratory Spatial Data Analysis,
Spatial Cluster Detection and Clustering Analysis, Regionalization, etc. based on the C++ source code
of 'GeoDa', which is an open-source software tool that serves as an introduction to spatial data analysis.
The 'GeoDa' software and its documentation are available at <https://geodacenter.github.io>.
Author: Xun Li [aut, cre],
Luc Anselin [aut]
Maintainer: Xun Li <lixun910@gmail.com>
Diff between rgeoda versions 0.0.11-1 dated 2024-12-19 and 0.1.0 dated 2025-03-06
DESCRIPTION | 8 +-- MD5 | 29 ++++++------ NAMESPACE | 1 R/RcppExports.R | 4 + R/utils.R | 24 ++++++++++ man/eb_rates_standardization.Rd |only src/RcppExports.cpp | 13 +++++ src/libgeoda/clustering/redcap_wrapper.cpp | 17 ++++--- src/libgeoda/clustering/schc_wrapper.cpp | 27 +++++++---- src/libgeoda/gda_clustering.cpp | 22 +++++---- src/libgeoda/gda_clustering.h | 18 +++---- src/libgeoda/gda_data.cpp | 68 +++++++++++++++++++++++++++++ src/libgeoda/gda_data.h | 49 ++++++++++++-------- src/libgeoda/sa/BatchLISA.h | 7 ++ src/libgeoda/sa/LISA.h | 7 ++ src/rcpp_lisa.cpp | 21 ++++++++ 16 files changed, 243 insertions(+), 72 deletions(-)
Title: Create and Query a Local Copy of 'GenBank' in R
Description: Download large sections of
'GenBank' <https://www.ncbi.nlm.nih.gov/genbank/> and generate a local
SQL-based database. A user can then query this database using 'restez'
functions or through 'rentrez' <https://CRAN.R-project.org/package=rentrez>
wrappers.
Author: Joel H. Nitta [aut, cre] ,
Dom Bennett [aut]
Maintainer: Joel H. Nitta <joelnitta@gmail.com>
Diff between restez versions 2.1.4 dated 2023-10-25 and 2.1.5 dated 2025-03-06
DESCRIPTION | 8 - MD5 | 158 ++++++++++++++++----------------- NEWS.md | 15 ++- R/entrez-tools.R | 10 +- R/gb-get-tools.R | 5 + R/gb-setup-tools.R | 7 + README.md | 2 man/add_rcrd_log.Rd | 4 man/cat_line.Rd | 4 man/char.Rd | 4 man/check_connection.Rd | 4 man/cleanup.Rd | 4 man/connected.Rd | 4 man/connection_get.Rd | 4 man/db_download_intern.Rd | 4 man/db_sqlngths_get.Rd | 4 man/db_sqlngths_log.Rd | 4 man/dir_size.Rd | 4 man/dwnld_path_get.Rd | 4 man/dwnld_rcrd_log.Rd | 4 man/entrez_fasta_get.Rd | 4 man/entrez_gb_get.Rd | 4 man/extract_accession.Rd | 4 man/extract_by_patterns.Rd | 4 man/extract_clean_sequence.Rd | 4 man/extract_definition.Rd | 4 man/extract_features.Rd | 4 man/extract_inforecpart.Rd | 4 man/extract_keywords.Rd | 4 man/extract_locus.Rd | 4 man/extract_organism.Rd | 4 man/extract_seqrecpart.Rd | 4 man/extract_sequence.Rd | 4 man/extract_version.Rd | 4 man/file_download.Rd | 4 man/filename_log.Rd | 4 man/flatfile_read.Rd | 4 man/gb_build.Rd | 4 man/gb_df_create.Rd | 4 man/gb_df_generate.Rd | 4 man/gb_sql_add.Rd | 4 man/gb_sql_query.Rd | 4 man/gbrelease_check.Rd | 4 man/gbrelease_get.Rd | 4 man/gbrelease_log.Rd | 4 man/has_data.Rd | 4 man/identify_downloadable_files.Rd | 4 man/last_add_get.Rd | 4 man/last_dwnld_get.Rd | 4 man/last_entry_get.Rd | 4 man/latest_genbank_release.Rd | 2 man/latest_genbank_release_notes.Rd | 2 man/message_missing.Rd | 4 man/mock_def.Rd | 4 man/mock_gb_df_generate.Rd | 4 man/mock_org.Rd | 4 man/mock_rec.Rd | 4 man/mock_seq.Rd | 4 man/predict_datasizes.Rd | 4 man/readme_log.Rd | 4 man/restez.Rd | 2 man/restez_connect.Rd | 4 man/restez_disconnect.Rd | 4 man/restez_path_check.Rd | 4 man/restez_rl.Rd | 4 man/search_gz.Rd | 4 man/seshinfo_log.Rd | 4 man/setup.Rd | 4 man/slctn_get.Rd | 4 man/slctn_log.Rd | 4 man/sql_path_get.Rd | 4 man/stat.Rd | 2 man/status_class.Rd | 2 man/testdatadir_get.Rd | 6 - tests/testthat/test-biomartr-tools.R | 19 ++- tests/testthat/test-entrez-tools.R | 22 +--- tests/testthat/test-gb-setup-tools.R | 23 +--- tests/testthat/test-get-tools.R | 6 + tests/testthat/test-log-tools.R | 12 +- tests/testthat/test-rentrez-wrappers.R | 8 - 80 files changed, 290 insertions(+), 265 deletions(-)
Title: Risk Metrics to Evaluating R Packages
Description: Facilities for assessing R packages against a number of metrics to
help quantify their robustness.
Author: R Validation Hub [aut],
Doug Kelkhoff [aut],
Marly Gotti [aut],
Eli Miller [cre, aut],
Kevin K [aut],
Yilong Zhang [aut],
Eric Milliman [aut],
Juliane Manitz [aut],
Mark Padgham [ctb],
PSI special interest group Application and Implementation of
Meth [...truncated...]
Maintainer: Eli Miller <eli.miller@atorusresearch.com>
Diff between riskmetric versions 0.2.4 dated 2024-01-09 and 0.2.5 dated 2025-03-06
riskmetric-0.2.4/riskmetric/man/figures/hex-riskmetric-aspconfig.png |only riskmetric-0.2.4/riskmetric/tests/testthat/testPackage1 |only riskmetric-0.2.5/riskmetric/DESCRIPTION | 8 riskmetric-0.2.5/riskmetric/MD5 | 34 riskmetric-0.2.5/riskmetric/NEWS.md | 4 riskmetric-0.2.5/riskmetric/R/assess_dependencies.R | 4 riskmetric-0.2.5/riskmetric/R/assess_size_codebase.R | 9 riskmetric-0.2.5/riskmetric/R/pkg_ref_cache_news.R | 4 riskmetric-0.2.5/riskmetric/R/pkg_ref_class.R | 4 riskmetric-0.2.5/riskmetric/README.md | 8 riskmetric-0.2.5/riskmetric/build/vignette.rds |binary riskmetric-0.2.5/riskmetric/inst/doc/extending-riskmetric.R | 6 riskmetric-0.2.5/riskmetric/inst/doc/extending-riskmetric.html | 429 +++----- riskmetric-0.2.5/riskmetric/inst/doc/riskmetric.R | 16 riskmetric-0.2.5/riskmetric/inst/doc/riskmetric.html | 482 +++------- riskmetric-0.2.5/riskmetric/man/determine_pkg_source.Rd | 2 riskmetric-0.2.5/riskmetric/man/figures/logo.png |only riskmetric-0.2.5/riskmetric/man/metric_score.pkg_metric_size_codebase.Rd | 2 riskmetric-0.2.5/riskmetric/man/riskmetric.Rd | 2 19 files changed, 416 insertions(+), 598 deletions(-)
Title: Tools for R Package Developers
Description: R-hub v2 uses GitHub Actions to run 'R CMD check' and
similar package checks. The 'rhub' package helps you set up
R-hub v2 for your R package, and start running checks.
Author: Gabor Csardi [aut, cre],
Maelle Salmon [aut] ,
R Consortium [fnd]
Maintainer: Gabor Csardi <csardi.gabor@gmail.com>
Diff between rhub versions 2.0.0 dated 2024-04-11 and 2.0.1 dated 2025-03-06
DESCRIPTION | 8 +++---- MD5 | 36 +++++++++++++++++++------------- NEWS.md | 7 ++++++ R/aaa-async.R | 6 ++--- R/check.R | 2 - R/doctor.R | 2 - R/platforms.R | 13 +++++++---- man/figures/rhub-check-dark.svg |only man/figures/rhub-check.svg |only man/figures/rhub-doctor-dark.svg |only man/figures/rhub-doctor.svg |only man/figures/rhub-platforms-dark.svg |only man/figures/rhub-platforms.svg |only man/figures/rhub-setup-dark.svg |only man/figures/rhub-setup.svg |only man/rhub-package.Rd | 2 - man/rhub_check.Rd | 2 - man/rhubv2.Rd | 8 +++---- tests/testthat/_snaps/doctor.md | 2 - tests/testthat/_snaps/platforms.md | 12 +++++----- tests/testthat/fixtures/pkg/DESCRIPTION | 4 +-- tests/testthat/helpers.R | 3 +- tests/testthat/test-utils.R | 2 - 23 files changed, 64 insertions(+), 45 deletions(-)
Title: Wicked-Fast Streaming 'JSON' ('ndjson') Reader
Description: Streaming 'JSON' ('ndjson') has one 'JSON' record per-line
and many modern 'ndjson' files contain large numbers of records.
These constructs may not be columnar in nature, but it is often
useful to read in these files and "flatten" the structure out to
enable working with the data in an R 'data.frame'-like context.
Functions are provided that make it possible to read in plain
'ndjson' files or compressed ('gz') 'ndjson' files and either
validate the format of the records or create "flat" 'data.table'
structures from them.
Author: Bob Rudis [aut, cre] ,
Niels Lohmann [aut] ,
Deepak Bandyopadhyay [aut] ,
Lutz Kettner [aut] ,
Neal Fultz [ctb] ,
Maarten Demeyer [ctb]
Maintainer: Bob Rudis <bob@rud.is>
Diff between ndjson versions 0.9.0 dated 2022-10-17 and 0.9.1 dated 2025-03-06
DESCRIPTION | 10 MD5 | 18 R/ndjson-package.R | 3 R/ndjson.R | 4 inst/include/json.h |21477 ++++++++++++++++++++++++++++------------------------ man/ndjson.Rd | 9 man/stream_in.Rd | 2 man/validate.Rd | 2 src/Makevars | 1 src/Makevars.win | 1 10 files changed, 11605 insertions(+), 9922 deletions(-)
Title: Scalar-on-Function Regression with Measurement Error Correction
Description: Solve scalar-on-function linear models,
including generalized linear mixed effect model and quantile linear regression model,
and bias correction estimation methods due to measurement error.
Details about the measurement error bias correction methods, see
Luan et al. (2023) <doi:10.48550/arXiv.2305.12624>,
Tekwe et al. (2022) <doi:10.1093/biostatistics/kxac017>,
Zhang et al. (2023) <doi:10.5705/ss.202021.0246>,
Tekwe et al. (2019) <doi:10.1002/sim.8179>.
Author: Heyang Ji [aut, cre, ctb, dtc]
,
Ufuk Beyaztas [aut, ctb, rev] ,
Nicolas Escobar-Velasquez [com]
,
Yuanyuan Luan [aut, ctb],
Xiwei Chen [aut, ctb],
Mengli Zhang [aut, ctb],
Roger Zoh [aut, ths],
Lan Xue [aut, ths],
Carmen Tekwe [aut, ths]
Maintainer: Heyang Ji <jihx1015@outlook.com>
Diff between MECfda versions 0.1.0 dated 2024-10-21 and 0.2.0 dated 2025-03-06
DESCRIPTION | 43 - MD5 | 94 +- NAMESPACE | 17 NEWS.md |only R/FPC_basis_expansion.R |only R/FourierSeries2fun.R | 2 R/ME.fcLR_IV.R | 6 R/ME.fcQR_CLS.R | 8 R/ME.fcQR_IV.SIMEX.R | 27 R/ME.fcRegression_MEM.R | 8 R/MECfda_simDataGen_ME.R |only R/MECfda_simDataGen_fcReg.R |only R/MEM_X_hat.R |only R/basis2fun.R | 14 R/bsplineSeries2fun.R | 4 R/bspline_basis_expansion.R | 4 R/classDefintions.R | 90 ++ R/fcQR.R | 49 + R/fcRegression.R | 60 + R/fourier_basis_expansion.R | 8 R/functional_variable.R | 2 R/initialize.numeric_basis.R |only R/numericBasisSeries2fun.R |only R/numeric_basis_expansion.R |only R/plot.bspline_series.R | 4 R/plot.numeric_series.R |only R/predict.fcQR.R | 11 R/predict.fcRegression.R | 11 build/vignette.rds |binary inst/doc/MECfda.R | 168 ++-- inst/doc/MECfda.Rmd | 892 ++++++++++++------------ inst/doc/MECfda.html | 1188 ++++++++++++++++++++------------- man/FPC_basis_expansion.Rd |only man/FourierSeries2fun.Rd | 2 man/ME.fcLR_IV.Rd | 6 man/ME.fcQR_CLS.Rd | 8 man/ME.fcQR_IV.SIMEX.Rd | 4 man/ME.fcRegression_MEM.Rd | 8 man/MECfda_simDataGen_ME.Rd |only man/MECfda_simDataGen_fcReg.Rd |only man/MEM_X_hat.Rd |only man/basis2fun.Rd | 8 man/bsplineSeries2fun.Rd | 4 man/bspline_basis-class.Rd | 2 man/bspline_basis_expansion.Rd | 2 man/fcQR.Rd | 17 man/fcRegression.Rd | 23 man/fourier_basis_expansion.Rd | 2 man/functional_variable-class.Rd | 2 man/numericBasisSeries2fun.Rd |only man/numericBasis_series-class.Rd |only man/numeric_basis-class.Rd |only man/numeric_basis_expansion.Rd |only man/plot-bspline_series-method.Rd | 4 man/plot-numericBasis_series-method.Rd |only man/predict.fcRegression.Rd | 86 +- vignettes/MECfda.Rmd | 892 ++++++++++++------------ 57 files changed, 2175 insertions(+), 1605 deletions(-)
Title: Bindings to 'OpenCV' Computer Vision Library
Description: Exposes some of the available 'OpenCV' <https://opencv.org/> algorithms,
such as a QR code scanner, and edge, body or face detection. These can either be
applied to analyze static images, or to filter live video footage from a camera device.
Author: Jeroen Ooms [aut, cre] ,
Jan Wijffels [aut]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>
Diff between opencv versions 0.4.1 dated 2024-10-04 and 0.5.0 dated 2025-03-06
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS | 3 +++ src/Makevars.win | 31 +++++++++++++++++++++++-------- 4 files changed, 32 insertions(+), 14 deletions(-)
Title: A Modular Platform for Reproducible Modeling of Species Niches
and Distributions
Description: The 'shiny' application Wallace is a modular platform for
reproducible modeling of species niches and distributions. Wallace
guides users through a complete analysis, from the acquisition of species
occurrence and environmental data to visualizing model predictions on an
interactive map, thus bundling complex workflows into a single,
streamlined interface. An extensive vignette, which guides users through
most package functionality can be found on the package's GitHub Pages
website: <https://wallaceecomod.github.io/wallace/articles/tutorial-v2.html>.
Author: Bethany A. Johnson [aut],
Daniel F. Lopez-Lozano [aut],
Jamie M. Kass [aut],
Gonzalo E. Pinilla-Buitrago [aut],
Andrea Paz [aut],
Valentina Grisales-Betancur [aut],
Dean Attali [aut],
Matthew E. Aiello-Lammens [aut],
Cory Merow [aut],
Mary E. Blair [ [...truncated...]
Maintainer: Mary E. Blair <mblair1@amnh.org>
Diff between wallace versions 2.1.3 dated 2024-07-18 and 2.2.0 dated 2025-03-06
DESCRIPTION | 16 +++-- MD5 | 84 +++++++++++++++--------------- NEWS.md | 6 ++ R/model_bioclim.R | 3 - R/model_maxent.R | 5 + R/part_partitionOccs.R | 18 +++--- R/vis_bioclimPlot.R | 1 R/xfer_area.R | 27 ++++++--- R/xfer_time.R | 20 +++---- R/xfer_userEnvs.R | 24 +++++--- README.md | 4 - inst/module_skeleton/skeleton.R | 2 inst/shiny/Rmd/text_about.Rmd | 2 inst/shiny/Rmd/text_intro_tab.Rmd | 2 inst/shiny/Rmd/userReport_intro.Rmd | 2 inst/shiny/modules/envs_userEnvs.md | 4 - inst/shiny/modules/model_bioclim.yml | 2 inst/shiny/modules/model_maxent.yml | 2 inst/shiny/modules/part_nonSpat.yml | 2 inst/shiny/modules/part_spat.yml | 2 inst/shiny/modules/vis_bioclimPlot.yml | 2 inst/shiny/modules/vis_mapPreds.R | 12 ++-- inst/shiny/modules/vis_mapPreds.Rmd | 18 +++--- inst/shiny/modules/vis_mapPreds.yml | 2 inst/shiny/modules/vis_maxentEvalPlot.yml | 2 inst/shiny/modules/vis_responsePlot.R | 2 inst/shiny/modules/vis_responsePlot.Rmd | 2 inst/shiny/modules/vis_responsePlot.yml | 2 inst/shiny/modules/xfer_area.R | 2 inst/shiny/modules/xfer_time.md | 2 inst/shiny/server.R | 2 man/model_bioclim.Rd | 2 man/model_maxent.Rd | 2 man/part_partitionOccs.Rd | 6 +- man/vis_bioclimPlot.Rd | 2 man/xfer_area.Rd | 19 +++++- man/xfer_time.Rd | 12 ++-- man/xfer_userEnvs.Rd | 16 ++++- tests/testthat/test_model_bioclim.R | 8 +- tests/testthat/test_model_maxent.R | 4 - tests/testthat/test_xfer_area.R | 17 ++++-- tests/testthat/test_xfer_time.R | 15 +++-- tests/testthat/test_xfer_userEnvs.R | 20 +++++-- 43 files changed, 249 insertions(+), 150 deletions(-)
Title: Mapping Data for 'usmap' Package
Description: Provides a container for data used by the 'usmap' package.
The data used by 'usmap' has been extracted into this package so that the
file size of the 'usmap' package can be reduced greatly. The data in this
package will be updated roughly once per year as new map data files are
provided by the US Census Bureau.
Author: Paolo Di Lorenzo [aut, cre]
Maintainer: Paolo Di Lorenzo <paolo@dilorenzo.org>
Diff between usmapdata versions 0.3.0 dated 2024-05-17 and 0.4.0 dated 2025-03-06
usmapdata-0.3.0/usmapdata/inst/extdata/us_counties.gpkg |only usmapdata-0.3.0/usmapdata/inst/extdata/us_counties_centroids.gpkg |only usmapdata-0.3.0/usmapdata/inst/extdata/us_states.gpkg |only usmapdata-0.3.0/usmapdata/inst/extdata/us_states_centroids.gpkg |only usmapdata-0.4.0/usmapdata/DESCRIPTION | 12 usmapdata-0.4.0/usmapdata/MD5 | 54 - usmapdata-0.4.0/usmapdata/NAMESPACE | 13 usmapdata-0.4.0/usmapdata/NEWS.md | 144 +- usmapdata-0.4.0/usmapdata/R/create-us-map.R | 525 +++++----- usmapdata-0.4.0/usmapdata/R/fips-data.R | 51 usmapdata-0.4.0/usmapdata/R/us-map.R | 232 ++-- usmapdata-0.4.0/usmapdata/R/usmapdata-package.R | 2 usmapdata-0.4.0/usmapdata/README.md | 196 +-- usmapdata-0.4.0/usmapdata/inst/WORDLIST | 24 usmapdata-0.4.0/usmapdata/inst/extdata/2021 |only usmapdata-0.4.0/usmapdata/inst/extdata/2022 |only usmapdata-0.4.0/usmapdata/inst/extdata/2023 |only usmapdata-0.4.0/usmapdata/man/available_map_years.Rd |only usmapdata-0.4.0/usmapdata/man/centroid_labels.Rd | 58 - usmapdata-0.4.0/usmapdata/man/create_us_map.Rd | 153 +- usmapdata-0.4.0/usmapdata/man/fips_data.Rd | 70 - usmapdata-0.4.0/usmapdata/man/select_map_year.Rd |only usmapdata-0.4.0/usmapdata/man/us_map.Rd | 109 +- usmapdata-0.4.0/usmapdata/man/usmapdata.Rd | 104 - usmapdata-0.4.0/usmapdata/tests/spelling.R | 2 usmapdata-0.4.0/usmapdata/tests/testthat.R | 24 usmapdata-0.4.0/usmapdata/tests/testthat/test-fips-data.R | 82 - usmapdata-0.4.0/usmapdata/tests/testthat/test-usmap.R | 175 +-- 28 files changed, 1095 insertions(+), 935 deletions(-)
Title: Mathematics PhD Genealogy Data and Plotting
Description: Query, extract, and plot genealogical data from The Mathematics
Genealogy Project <https://mathgenealogy.org/>. Data is gathered from the
'WebSocket' server run by the 'geneagrapher-core' project
<https://github.com/davidalber/geneagrapher-core>.
Author: Louis Aslett [aut, cre]
Maintainer: Louis Aslett <louis.aslett@durham.ac.uk>
Diff between maths.genealogy versions 0.1.1 dated 2025-03-03 and 0.1.2 dated 2025-03-06
DESCRIPTION | 8 ++++---- MD5 | 32 ++++++++++++++++---------------- NEWS.md | 5 +++++ R/get_genealogy.R | 4 ++++ R/plot_gg.R | 4 ++++ R/plot_gg_path.R | 4 ++++ R/plot_grviz.R | 4 ++++ R/search_id.R | 6 +++++- build/partial.rdb |binary build/vignette.rds |binary inst/doc/getting-started.html | 8 ++++---- man/get_genealogy.Rd | 4 ++++ man/maths.genealogy-package.Rd | 2 +- man/plot_gg.Rd | 4 ++++ man/plot_gg_path.Rd | 4 ++++ man/plot_grviz.Rd | 4 ++++ man/search_id.Rd | 4 ++++ 17 files changed, 71 insertions(+), 26 deletions(-)
More information about maths.genealogy at CRAN
Permanent link
Title: Dual Feature Reduction for SGL
Description: Implementation of the Dual Feature Reduction (DFR) approach for the Sparse Group Lasso (SGL) and the Adaptive Sparse Group Lasso (aSGL) (Feser and Evangelou (2024) <doi:10.48550/arXiv.2405.17094>). The DFR approach is a feature reduction approach that applies strong screening to reduce the feature space before optimisation, leading to speed-up improvements for fitting SGL (Simon et al. (2013) <doi:10.1080/10618600.2012.681250>) and aSGL (Mendez-Civieta et al. (2020) <doi:10.1007/s11634-020-00413-8> and Poignard (2020) <doi:10.1007/s10463-018-0692-7>) models. DFR is implemented using the Adaptive Three Operator Splitting (ATOS) (Pedregosa and Gidel (2018) <doi:10.48550/arXiv.1804.02339>) algorithm, with linear and logistic SGL models supported, both of which can be fit using k-fold cross-validation. Dense and sparse input matrices are supported.
Author: Fabio Feser [aut, cre]
Maintainer: Fabio Feser <ff120@ic.ac.uk>
Diff between dfr versions 0.1.4 dated 2025-02-06 and 0.1.5 dated 2025-03-06
DESCRIPTION | 8 ++-- MD5 | 22 ++++++------- R/dfr_adap_sgl.R | 31 ++++++++++++++++-- R/dfr_sgl.R | 25 +++++++++++++- R/fitting_code.R | 24 ++------------ R/global_wrapper_code.R | 81 +++++++++++++++++++++++++++++++++++------------- R/run_algorithm.R | 4 +- R/screen.R | 14 ++------ R/utils.R | 66 ++++++++++++++++++++++++++++++++------- build/partial.rdb |binary man/dfr_adap_sgl.Rd | 6 +-- man/dfr_sgl.Rd | 4 +- 12 files changed, 193 insertions(+), 92 deletions(-)
Title: Conditional Binary Quantile Models
Description: Estimates conditional binary quantile models developed by Lu (2020) <doi:10.1017/pan.2019.29>. The estimation procedure is implemented based on Markov chain Monte Carlo methods.
Author: Xiao Lu [aut, cre]
Maintainer: Xiao Lu <xiao.lu.research@gmail.com>
Diff between cbq versions 0.2.0.3 dated 2023-04-02 and 0.2.0.4 dated 2025-03-06
DESCRIPTION | 14 +++++++++----- MD5 | 14 +++++++------- inst/stan/cbqfixd.stan | 18 +++++++++--------- inst/stan/cbqfixdv.stan | 18 +++++++++--------- inst/stan/cbqpaneld.stan | 18 +++++++++--------- inst/stan/cbqpaneldv.stan | 18 +++++++++--------- inst/stan/cbqrandomd.stan | 18 +++++++++--------- inst/stan/cbqrandomdv.stan | 18 +++++++++--------- 8 files changed, 70 insertions(+), 66 deletions(-)
Title: Interface to the 'Zoltar' Forecast Repository API
Description: 'Zoltar' <https://www.zoltardata.com/> is a website that provides a repository of model forecast results
in a standardized format and a central location. It supports storing, retrieving, comparing, and analyzing time
series forecasts for prediction challenges of interest to the modeling community. This package provides functions
for working with the 'Zoltar' API, including connecting and authenticating, getting meta information (projects,
models, and forecasts, and truth), and uploading, downloading, and deleting forecast and truth data.
Author: Matthew Cornell [aut, cre],
Nicholas Reich [aut, cph]
Maintainer: Matthew Cornell <cornell@umass.edu>
Diff between zoltr versions 1.0.1 dated 2024-06-27 and 1.0.2 dated 2025-03-06
DESCRIPTION | 6 MD5 | 32 +-- NAMESPACE | 5 NEWS.md | 6 R/connection.R | 14 - R/model.R | 9 R/project.R | 14 - inst/doc/getting-started.html | 4 inst/doc/project-owners.html | 22 +- tests/testthat/test-cdc.R | 2 tests/testthat/test-connection.R | 134 +++++-------- tests/testthat/test-csv.R | 2 tests/testthat/test-forecast.R | 152 +++++++------- tests/testthat/test-job.R | 75 +++---- tests/testthat/test-model.R | 234 ++++++++++------------- tests/testthat/test-project.R | 396 ++++++++++++++++++--------------------- tests/testthat/test-quantile.R | 2 17 files changed, 523 insertions(+), 586 deletions(-)
Title: Generating Synthetic Versions of Sensitive Microdata for
Statistical Disclosure Control
Description: A tool for producing synthetic versions of microdata containing confidential information so that they are safe to be released to users for exploratory analysis. The key objective of generating synthetic data is to replace sensitive original values with synthetic ones causing minimal distortion of the statistical information contained in the data set. Variables, which can be categorical or continuous, are synthesised one-by-one using sequential modelling. Replacements are generated by drawing from conditional distributions fitted to the original data using parametric or classification and regression trees models. Data are synthesised via the function syn() which can be largely automated, if default settings are used, or with methods defined by the user. Optional parameters can be used to influence the disclosure risk and the analytical quality of the synthesised data. For a description of the implemented method see Nowok, Raab and Dibben (2016) <doi:10.18637/jss.v074.i11>. Functio [...truncated...]
Author: Beata Nowok [aut, cre],
Gillian M Raab [aut],
Chris Dibben [ctb],
Joshua Snoke [ctb],
Caspar van Lissa [ctb],
Lotte Pater [ctb]
Maintainer: Beata Nowok <beata.nowok@gmail.com>
Diff between synthpop versions 1.9-0 dated 2024-12-20 and 1.9-1 dated 2025-03-06
DESCRIPTION | 8 ++++---- MD5 | 18 +++++++++--------- NEWS | 9 +++++++++ inst/doc/disclosure.pdf |binary inst/doc/inference.Rnw | 8 +++----- inst/doc/inference.pdf |binary inst/doc/synthpop.pdf |binary inst/doc/utility.pdf |binary man/synthpop-package.Rd | 4 ++-- vignettes/inference.Rnw | 8 +++----- 10 files changed, 30 insertions(+), 25 deletions(-)
Title: Perform Recursive Computations
Description: Mass rollup for a Bill of Materials is an example of a class of computations in which elements are arranged in a tree structure and some property of each element is a computed function of the corresponding values of its child elements. Leaf elements, i.e., those with no children, have values assigned. In many cases, the combining function is simple arithmetic sum; in other cases (e.g., mass properties), the combiner may involve other information such as the geometric relationship between parent and child, or statistical relations such as root-sum-of-squares (RSS). This package implements a general function for such problems. It is adapted to specific recursive computations by functional programming techniques; the caller passes a function as the update parameter to rollup() (or, at a lower level, passes functions as the get, set, combine, and override parameters to update_prop()) at runtime to specify the desired operations. The implementation relies on graph-theoretic algorithms from [...truncated...]
Author: James Steven Jenkins [aut, cre, cph]
Maintainer: James Steven Jenkins <sjenkins@studioj.us>
Diff between rollupTree versions 0.2.0 dated 2025-02-04 and 0.3.0 dated 2025-03-06
DESCRIPTION | 6 +- MD5 | 22 +++++---- NAMESPACE | 1 NEWS.md | 11 ++-- R/rollup.R | 20 +++++++- R/test_dag.R |only README.md | 4 + data/test_dag.rda |only inst/doc/rollupTree.Rmd | 2 inst/doc/rollupTree.html | 6 ++ man/default_validate_dag.Rd |only man/test_dag.Rd |only tests/testthat/test-rollup.R | 103 +++++++++++++++++++++++++++++++++++++++++++ vignettes/rollupTree.Rmd | 2 14 files changed, 159 insertions(+), 18 deletions(-)
Title: Shared, Joint (Generalized) Frailty Models; Surrogate Endpoints
Description: The following several classes of frailty models using a
penalized likelihood estimation on the hazard function but also a
parametric estimation can be fit using this R package: 1) A shared
frailty model (with gamma or log-normal frailty distribution) and Cox
proportional hazard model. Clustered and recurrent survival times can
be studied. 2) Additive frailty models for proportional hazard models
with two correlated random effects (intercept random effect with
random slope). 3) Nested frailty models for hierarchically clustered
data (with 2 levels of clustering) by including two iid gamma random
effects. 4) Joint frailty models in the context of the joint
modelling for recurrent events with terminal event for clustered data
or not. A joint frailty model for two semi-competing risks and
clustered data is also proposed. 5) Joint general frailty models in
the context of the joint modelling for recurrent events with terminal
event data with two independent frailty terms. 6) Joint Neste [...truncated...]
Author: Virginie Rondeau [aut, cre] ,
Juan R. Gonzalez [aut],
Yassin Mazroui [aut],
Audrey Mauguen [aut],
Amadou Diakite [aut],
Alexandre Laurent [aut],
Myriam Lopez [aut],
Agnieszka Krol [aut],
Casimir L. Sofeu [aut],
Julien Dumerc [aut],
Denis Rustand [aut [...truncated...]
Maintainer: Virginie Rondeau <virginie.rondeau@u-bordeaux.fr>
Diff between frailtypack versions 3.6.5 dated 2024-12-14 and 3.7.0 dated 2025-03-06
DESCRIPTION | 147 ++++++++++++++++++++++++++---------------- MD5 | 26 ++++--- NAMESPACE | 18 +++++ NEWS | 31 +++++--- R/frailtyDesign.R |only R/frailtypack-package.R | 20 ++++- R/print.frailtyDesign.R |only R/summary.frailtyDesign.R |only build/vignette.rds |binary inst/doc/Package_summary.Rmd | 30 ++++---- inst/doc/Package_summary.html | 123 ++++++++++++++++++++--------------- man/frailtyDesign.Rd |only man/frailtypack-package.Rd | 17 ++++ man/print.frailtyDesign.Rd |only man/print.prediction.Rd | 62 ++++++++--------- man/summary.frailtyDesign.Rd |only vignettes/Package_summary.Rmd | 30 ++++---- 17 files changed, 315 insertions(+), 189 deletions(-)
Title: Analyse Open-Ended Survey Responses in Finnish
Description: Annotates Finnish textual survey responses into CoNLL-U format using Finnish treebanks from <https://universaldependencies.org/format.html> using UDPipe as described in Straka and Straková (2017) <doi:10.18653/v1/K17-3009>. Formatted data is then analysed using single or comparison n-gram plots, wordclouds, summary tables and Concept Network plots. The Concept Network plots use the TextRank algorithm as outlined in Mihalcea, Rada & Tarau, Paul (2004) <https://aclanthology.org/W04-3252/>.
Author: Adeline Clarke [cre, aut],
Krista Lagus [aut],
Katja Laine [aut],
Maria Litova [aut],
Matti Nelimarkka [aut],
Joni Oksanen [aut],
Jaakko Peltonen [aut],
Tuukka Oikarinen [aut],
Jani-Matti Tirkkonen [aut],
Ida Toivanen [aut],
Maria Valaste [aut],
Shan [...truncated...]
Maintainer: Adeline Clarke <adelinepclarke@gmail.com>
Diff between finnsurveytext versions 2.1.0 dated 2024-11-08 and 2.1.1 dated 2025-03-06
DESCRIPTION | 6 MD5 | 56 ++++---- NEWS.md | 4 R/01_prepare.R | 30 ++-- R/01b_prepare_svydesign.R | 26 ++- R/02_data_exploration.R | 35 +++-- R/03_concept_network.R | 4 R/04_comparison_functions.R | 4 README.md | 16 +- inst/doc/Overview-PackageTutorial.R | 2 inst/doc/Overview-PackageTutorial.Rmd | 20 ++ inst/doc/Overview-PackageTutorial.html | 112 ++++++++++------ inst/doc/ReadMe.Rmd | 16 +- inst/doc/ReadMe.html | 27 +++ man/fst_find_stopwords.Rd | 2 man/fst_format.Rd | 9 - man/fst_format_svydesign.Rd | 10 - man/fst_freq_table.Rd | 2 man/fst_prepare.Rd | 13 + man/fst_prepare_svydesign.Rd | 16 +- man/fst_rm_stop_punct.Rd | 6 vignettes/Overview-PackageTutorial.Rmd | 20 ++ vignettes/ReadMe.Rmd | 16 +- vignettes/web_only/Extra-AnalysingOtherLanguages.Rmd | 109 +++++++++------ vignettes/web_only/Extra-UseWithSurveyPackage.Rmd | 3 vignettes/web_only/InDetail1-DataPreparation.Rmd | 15 +- vignettes/web_only/InDetail2-DataExploration.Rmd | 2 vignettes/web_only/InDetail3-ConceptNetworkOverview.Rmd | 6 vignettes/web_only/InDetail6-AnalysisExample2.Rmd | 1 29 files changed, 375 insertions(+), 213 deletions(-)
More information about finnsurveytext at CRAN
Permanent link
Title: Spectroscopy Related Utilities
Description: Utility functions for spectroscopy. 1. Functions to simulate
spectra for use in teaching or testing. 2. Functions to process files created by
'LoggerPro' and 'SpectraSuite' software.
Author: Bryan A. Hanson [aut, cre]
Maintainer: Bryan A. Hanson <hanson@depauw.edu>
Diff between SpecHelpers versions 0.2.7 dated 2017-07-26 and 0.3.1 dated 2025-03-06
SpecHelpers-0.2.7/SpecHelpers/inst |only SpecHelpers-0.3.1/SpecHelpers/DESCRIPTION | 20 ++++--- SpecHelpers-0.3.1/SpecHelpers/MD5 | 42 +++++++-------- SpecHelpers-0.3.1/SpecHelpers/NAMESPACE | 1 SpecHelpers-0.3.1/SpecHelpers/NEWS | 5 + SpecHelpers-0.3.1/SpecHelpers/R/CIExyz.R | 5 + SpecHelpers-0.3.1/SpecHelpers/R/SpecHelpers-package.R | 3 - SpecHelpers-0.3.1/SpecHelpers/R/emSpectrum.R | 2 SpecHelpers-0.3.1/SpecHelpers/R/getGamutValues.R | 2 SpecHelpers-0.3.1/SpecHelpers/R/multiplet.R |only SpecHelpers-0.3.1/SpecHelpers/R/plotCIEchrom.R | 4 - SpecHelpers-0.3.1/SpecHelpers/R/prepCIEgradient.R | 2 SpecHelpers-0.3.1/SpecHelpers/R/sysdata.rda |binary SpecHelpers-0.3.1/SpecHelpers/build |only SpecHelpers-0.3.1/SpecHelpers/data/CIExyz.RData |binary SpecHelpers-0.3.1/SpecHelpers/man/CIExyz.Rd | 17 +++--- SpecHelpers-0.3.1/SpecHelpers/man/SpecHelpers-package.Rd | 8 ++ SpecHelpers-0.3.1/SpecHelpers/man/getGamutValues.Rd | 1 SpecHelpers-0.3.1/SpecHelpers/man/makeSpec.Rd | 12 +++- SpecHelpers-0.3.1/SpecHelpers/man/multiplet.Rd |only SpecHelpers-0.3.1/SpecHelpers/man/plot2DNMRspec.Rd | 12 +++- SpecHelpers-0.3.1/SpecHelpers/man/plotCIEchrom.Rd | 12 +++- SpecHelpers-0.3.1/SpecHelpers/man/plotNMRspec.Rd | 13 +++- SpecHelpers-0.3.1/SpecHelpers/man/qMS.Rd | 3 - 24 files changed, 109 insertions(+), 55 deletions(-)
Title: TK Rplot
Description: Simple mechanism for placing R graphics in a Tk widget.
Author: Luke Tierney <luke-tierney@uiowa.edu>
Maintainer: Luke Tierney <luke-tierney@uiowa.edu>
Diff between tkrplot versions 0.0-27 dated 2022-10-18 and 0.0-29 dated 2025-03-06
DESCRIPTION | 6 +++--- MD5 | 6 +++--- man/TkRplot.Rd | 7 +++++++ src/tcltkimg.c | 10 ++++++---- 4 files changed, 19 insertions(+), 10 deletions(-)
Title: Methods for Quantitative Magnetic Resonance Imaging ('qMRI')
Description: Implementation of methods for estimation of quantitative maps
from Multi-Parameter Mapping (MPM) acquisitions (Weiskopf et al. (2013)
<doi:10.3389/fnins.2013.00095>) and analysis of Inversion Recovery MRI data.
Usage of the package is described in
Polzehl and Tabelow (2023),
"Magnetic Resonance Brain Imaging", 2nd Edition, Chapter 6 and 7, Springer, Use R! Series.
<doi:10.1007/978-3-031-38949-8>.
J. Polzehl and K. Tabelow (2023), "Magnetic Resonance Brain Imaging - Modeling and Data Analysis Using R: Code and Data."
<doi:10.20347/WIAS.DATA.6> provides extensive example code and data.
Author: Joerg Polzehl [aut],
Karsten Tabelow [aut, cre],
WIAS Berlin [cph, fnd]
Maintainer: Karsten Tabelow <karsten.tabelow@wias-berlin.de>
Diff between qMRI versions 1.2.7.8 dated 2024-12-09 and 1.2.7.9 dated 2025-03-06
DESCRIPTION | 8 ++++---- MD5 | 34 +++++++++++++++++----------------- build/partial.rdb |binary inst/doc/IRMRI-Example.R | 2 +- inst/doc/IRMRI-Example.Rnw | 2 +- inst/doc/IRMRI-Example.pdf |binary inst/doc/qMRI-Example.pdf |binary man/estimateIR.Rd | 2 +- man/estimateIRfluid.Rd | 2 +- man/estimateIRsolid.Rd | 2 +- man/estimateIRsolidfixed.Rd | 2 +- man/readIRData.Rd | 2 +- man/smoothIRSolid.Rd | 2 +- vignettes/IRMRI-Example-2.pdf |binary vignettes/IRMRI-Example-9.pdf |binary vignettes/IRMRI-Example.Rnw | 2 +- vignettes/qMRI-Example-11.pdf |binary vignettes/qMRI-Example-8.pdf |binary 18 files changed, 30 insertions(+), 30 deletions(-)
Title: Simulation of Matrix Population Models with Defined Life History
Characteristics
Description: Allows users to simulate matrix population models with
particular characteristics based on aspects of life history such as
mortality trajectories and fertility trajectories. Also allows the
exploration of sampling error due to small sample size.
Author: Owen Jones [aut, cre]
Maintainer: Owen Jones <jones@biology.sdu.dk>
Diff between mpmsim versions 3.1.0 dated 2024-10-12 and 3.2.0 dated 2025-03-06
mpmsim-3.1.0/mpmsim/R/generate_mpm_set.R |only mpmsim-3.1.0/mpmsim/R/random_mpm.R |only mpmsim-3.1.0/mpmsim/man/generate_mpm_set.Rd |only mpmsim-3.1.0/mpmsim/man/random_mpm.Rd |only mpmsim-3.1.0/mpmsim/tests/testthat/test-generate_mpm_set.R |only mpmsim-3.1.0/mpmsim/tests/testthat/test-random_mpm.R |only mpmsim-3.2.0/mpmsim/DESCRIPTION | 10 - mpmsim-3.2.0/mpmsim/MD5 | 65 +++--- mpmsim-3.2.0/mpmsim/NAMESPACE | 2 mpmsim-3.2.0/mpmsim/NEWS.md | 5 mpmsim-3.2.0/mpmsim/R/make_leslie_mpm.R | 11 + mpmsim-3.2.0/mpmsim/R/plot_matrix.R | 6 mpmsim-3.2.0/mpmsim/R/rand_lefko_mpm.R | 13 + mpmsim-3.2.0/mpmsim/R/rand_lefko_set.R | 48 ++++- mpmsim-3.2.0/mpmsim/R/rand_leslie_set.R | 60 +++--- mpmsim-3.2.0/mpmsim/README.md | 55 +++-- mpmsim-3.2.0/mpmsim/build/partial.rdb |binary mpmsim-3.2.0/mpmsim/build/vignette.rds |binary mpmsim-3.2.0/mpmsim/inst/WORDLIST | 4 mpmsim-3.2.0/mpmsim/inst/doc/generating_lefkovitch_models.Rmd | 4 mpmsim-3.2.0/mpmsim/inst/doc/generating_lefkovitch_models.html | 4 mpmsim-3.2.0/mpmsim/inst/doc/generating_leslie_models.R | 9 mpmsim-3.2.0/mpmsim/inst/doc/generating_leslie_models.Rmd | 20 +- mpmsim-3.2.0/mpmsim/inst/doc/generating_leslie_models.html | 23 +- mpmsim-3.2.0/mpmsim/inst/doc/sampling_error_propagation.R | 30 +-- mpmsim-3.2.0/mpmsim/inst/doc/sampling_error_propagation.Rmd | 44 ++-- mpmsim-3.2.0/mpmsim/inst/doc/sampling_error_propagation.html | 94 +++++----- mpmsim-3.2.0/mpmsim/man/figures/logo_mpmsim.png |only mpmsim-3.2.0/mpmsim/man/make_leslie_mpm.Rd | 12 + mpmsim-3.2.0/mpmsim/man/model_fecundity.Rd | 8 mpmsim-3.2.0/mpmsim/man/rand_lefko_mpm.Rd | 15 + mpmsim-3.2.0/mpmsim/man/rand_lefko_set.Rd | 36 ++- mpmsim-3.2.0/mpmsim/man/rand_leslie_set.Rd | 21 +- mpmsim-3.2.0/mpmsim/tests/testthat/test-rand_lefko_set.R | 10 - mpmsim-3.2.0/mpmsim/vignettes/generating_lefkovitch_models.Rmd | 4 mpmsim-3.2.0/mpmsim/vignettes/generating_leslie_models.Rmd | 20 +- mpmsim-3.2.0/mpmsim/vignettes/sampling_error_propagation.Rmd | 44 ++-- 37 files changed, 389 insertions(+), 288 deletions(-)
Title: Miscellaneous Functions in C++
Description: Provides utility functions that are simply, frequently used,
but may require higher performance that what can be obtained from base R.
Incidentally provides support for 'reverse geocoding', such as matching a point
with its nearest neighbour in another array. Used as a complement to package
'hutils' by sacrificing compilation or installation time for higher running
speeds. The name is a portmanteau of the author and 'Rcpp'.
Author: Hugh Parsonage [aut, cre],
Simon Urbanek [ctb]
Maintainer: Hugh Parsonage <hugh.parsonage@gmail.com>
Diff between hutilscpp versions 0.10.7 dated 2025-01-08 and 0.10.8 dated 2025-03-06
DESCRIPTION | 8 +++--- MD5 | 8 +++--- NEWS.md | 1 man/ModeC.Rd | 2 - src/fastmatch_fastmatch.c | 59 ++++++++++++++++++++++++---------------------- 5 files changed, 41 insertions(+), 37 deletions(-)
Title: Download Colombian Demographic, Climate and Geospatial Data
Description: Downloads wrangled Colombian socioeconomic, geospatial,population
and climate data from DANE <https://www.dane.gov.co/> (National
Administrative Department of Statistics) and IDEAM (Institute of Hydrology,
Meteorology and Environmental Studies). It solves the problem of Colombian
data being issued in different web pages and sources by using functions that
allow the user to select the desired database and download it without having
to do the exhausting acquisition process.
Author: Maria Camila Tavera-Cifuentes [aut, cre, cph]
,
Julian Otero [aut, cph] ,
Natalia Nino-Machado [ctb] ,
Catalina Gonzalez-Uribe [ctb] ,
Juan Manuel Cordovez [ctb] ,
Hugo Gruson [rev] ,
Chris Hartgerink [rev] ,
Karim Mane [rev] ,
Joshua W. Lambert [rev [...truncated...]
Maintainer: Maria Camila Tavera-Cifuentes <mc.tavera@uniandes.edu.co>
Diff between ColOpenData versions 0.3.1 dated 2024-10-30 and 1.0.0 dated 2025-03-06
DESCRIPTION | 16 MD5 | 56 NEWS.md | 34 R/download_climate.R | 640 +- R/download_demographic.R | 14 R/download_geospatial.R | 255 R/download_population_projections.R | 222 README.md | 56 build/vignette.rds |binary inst/WORDLIST | 247 inst/doc/climate_data.Rmd | 2 inst/doc/climate_data.html | 4 inst/doc/demographic_data.Rmd | 2 inst/doc/demographic_data.html | 4 inst/doc/design_principles.R |only inst/doc/design_principles.Rmd |only inst/doc/design_principles.html |only inst/doc/documentation_and_dictionaries.Rmd | 6 inst/doc/documentation_and_dictionaries.html | 21 inst/doc/geospatial_data.Rmd | 2 inst/doc/geospatial_data.html | 4 tests/testthat/_snaps/download_climate.md | 452 - tests/testthat/_snaps/download_demographic.md | 2484 ++++---- tests/testthat/_snaps/download_geospatial.md | 30 tests/testthat/_snaps/download_population_projections.md | 4400 +++++++-------- tests/testthat/_snaps/merge_geo_demographic.md | 108 vignettes/climate_data.Rmd | 2 vignettes/demographic_data.Rmd | 2 vignettes/design_principles.Rmd |only vignettes/documentation_and_dictionaries.Rmd | 6 vignettes/geospatial_data.Rmd | 2 31 files changed, 4598 insertions(+), 4473 deletions(-)
Title: Model Selection and Multimodel Inference Based on (Q)AIC(c)
Description: Functions to implement model selection and multimodel inference based on Akaike's information criterion (AIC) and the second-order AIC (AICc), as well as their quasi-likelihood counterparts (QAIC, QAICc) from various model object classes. The package implements classic model averaging for a given parameter of interest or predicted values, as well as a shrinkage version of model averaging parameter estimates or effect sizes. The package includes diagnostics and goodness-of-fit statistics for certain model types including those of 'unmarkedFit' classes estimating demographic parameters after accounting for imperfect detection probabilities. Some functions also allow the creation of model selection tables for Bayesian models of the 'bugs', 'rjags', and 'jagsUI' classes. Functions also implement model selection using BIC. Objects following model selection and multimodel inference can be formatted to LaTeX using 'xtable' methods included in the package.
Author: Marc J. Mazerolle [aut, cre]
Maintainer: Marc J. Mazerolle <marc.mazerolle@sbf.ulaval.ca>
Diff between AICcmodavg versions 2.3-3 dated 2023-11-16 and 2.3-4 dated 2025-03-06
DESCRIPTION | 15 MD5 | 70 +-- NAMESPACE | 36 + R/aictab.R | 132 ++++++ R/anovaOD.R | 237 +++++++++++ R/bictab.R | 102 ++++ R/detHist.R | 390 +++++++++++++++++-- R/extractCN.R | 3 R/extractX.R | 282 +++++++++++++ R/importance.R | 181 ++++++++ R/mb.gof.test.R | 4 R/modavg.R | 612 +++++++++++++++++++++++++++++ R/modavgEffect.R | 528 +++++++++++++++++++++++++ R/modavgPred.R | 780 ++++++++++++++++++++++++++++++++++++++ R/modavgShrink.R | 359 +++++++++++++++++ R/summaryOD.R | 121 +++++ build/vignette.rds |binary inst/NEWS | 8 inst/NEWS.Rd | 21 - inst/doc/AICcmodavg-unmarked.R | 16 inst/doc/AICcmodavg-unmarked.Rnw | 11 inst/doc/AICcmodavg-unmarked.pdf |binary inst/doc/AICcmodavg.pdf |binary man/AICcmodavg-package.Rd | 20 man/aictab.Rd | 8 man/anovaOD.Rd | 8 man/bictab.Rd | 10 man/detHist.Rd | 33 + man/extractX.Rd | 69 +-- man/importance.Rd | 22 - man/modavg.Rd | 42 +- man/modavgEffect.Rd | 134 +++++- man/modavgPred.Rd | 123 +++++ man/modavgShrink.Rd | 49 +- man/summaryOD.Rd | 14 vignettes/AICcmodavg-unmarked.Rnw | 11 36 files changed, 4221 insertions(+), 230 deletions(-)
Title: 'date' C++ Header Library for Date and Time Functionality
Description: A header-only C++ library is provided with support
for dates, time zones, ISO weeks, Julian dates, and Islamic dates.
'date' offers extensive date and time functionality for the C++11,
C++14 and C++17 standards and was written by Howard Hinnant and released
under the MIT license. A slightly modified version has been accepted
(along with 'tz.h') as part of C++20. This package regroups all
header files from the upstream repository by Howard Hinnant so that
other R packages can use them in their C++ code. At present, few of
the types have explicit 'Rcpp' wrappers though these may be added as
needed.
Author: Dirk Eddelbuettel [aut, cre] ,
Howard Hinnant [aut]
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppDate versions 0.0.4 dated 2024-10-14 and 0.0.5 dated 2025-03-06
ChangeLog | 21 +++++++++++++++++++++ DESCRIPTION | 8 ++++---- MD5 | 20 ++++++++++---------- build/partial.rdb |binary inst/NEWS.Rd | 8 ++++++++ inst/include/date.h | 8 ++++---- inst/include/islamic.h | 8 ++++---- inst/include/iso_week.h | 4 ++-- inst/include/julian.h | 8 ++++---- inst/include/solar_hijri.h | 8 ++++---- inst/include/tz.h | 12 ++++++------ 11 files changed, 67 insertions(+), 38 deletions(-)
Title: Canonical Correlations and Tests of Independence
Description: A simple interface for multivariate correlation analysis that unifies various classical
statistical procedures including t-tests, tests in univariate and multivariate linear models,
parametric and nonparametric tests for correlation, Kruskal-Wallis tests, common approximate
versions of Wilcoxon rank-sum and signed rank tests, chi-squared tests of independence, score
tests of particular hypotheses in generalized linear models, canonical correlation analysis and
linear discriminant analysis.
Author: Robert Schlicht [aut, cre]
Maintainer: Robert Schlicht <robert.schlicht@tu-dresden.de>
Diff between cctest versions 1.2.0 dated 2025-01-07 and 1.2.1 dated 2025-03-06
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/cctest.R | 2 +- man/cctest.Rd | 2 +- 4 files changed, 8 insertions(+), 8 deletions(-)
Title: Graphs and Tables for OMOP Results
Description: Provides methods to transform omop_result objects into
formatted tables and figures, facilitating the visualisation of study
results working with the Observational Medical Outcomes Partnership
(OMOP) Common Data Model.
Author: Marti Catala [aut] ,
Nuria Mercade-Besora [aut, cre]
,
Yuchen Guo [ctb] ,
Elin Rowlands [ctb] ,
Marta Alcalde-Herraiz [ctb] ,
Edward Burn [ctb]
Maintainer: Nuria Mercade-Besora <nuria.mercadebesora@ndorms.ox.ac.uk>
Diff between visOmopResults versions 1.0.1 dated 2025-02-27 and 1.0.2 dated 2025-03-06
DESCRIPTION | 32 - MD5 | 37 - R/datatableInternal.R | 140 ++-- R/formatEstimateValue.R | 2 R/mockResults.R | 5 R/plot.R | 4 R/plottingThemes.R | 2 R/utilities.R | 550 +++++++++-------- R/visOmopTable.R | 536 ++++++++--------- R/visTable.R | 389 ++++++------ inst/doc/a01_tables.html | 925 +++++++++++++++--------------- inst/doc/a02_plots.R | 6 man/visOmopResults-package.Rd | 2 tests/testthat/_snaps |only tests/testthat/test-datatableInternal.R |only tests/testthat/test-formatEstimateName.R | 4 tests/testthat/test-formatEstimateValue.R | 4 tests/testthat/test-formatTable.R | 181 ++--- tests/testthat/test-visOmopTable.R | 732 ++++++++++++----------- tests/testthat/test-visTable.R | 297 ++++----- 20 files changed, 1974 insertions(+), 1874 deletions(-)
More information about visOmopResults at CRAN
Permanent link
Title: Calculate Earth’s Obliquity and Precession in the Past
Description: Easily calculate precession and obliquity from an orbital solution (defaults to ZB18a from Zeebe and Lourens (2019) <doi:10.1126/science.aax0612>) and assumed or reconstructed values for tidal dissipation (Td) and dynamical ellipticity (Ed). This is a translation and adaptation of the 'C'-code in the supplementary material to Zeebe and Lourens (2022) <doi:10.1029/2021PA004349>, with further details on the methodology described in Zeebe (2022) <doi:10.3847/1538-3881/ac80f8>. The name of the 'C'-routine is 'snvec', which refers to the key units of computation: spin vector s and orbit normal vector n.
Author: Ilja Kocken [aut, cre, trl, cph]
,
Richard Zeebe [aut]
Maintainer: Ilja Kocken <ikocken@hawaii.edu>
Diff between snvecR versions 3.10.0 dated 2025-03-01 and 3.10.1 dated 2025-03-06
snvecR-3.10.0/snvecR/man/PT-ZB18a.Rd |only snvecR-3.10.0/snvecR/man/ZB23.Rxx.Rd |only snvecR-3.10.1/snvecR/DESCRIPTION | 6 snvecR-3.10.1/snvecR/MD5 | 33 ++- snvecR-3.10.1/snvecR/NEWS.md | 38 +++- snvecR-3.10.1/snvecR/R/data.R | 7 snvecR-3.10.1/snvecR/R/get_solution.R | 34 ++- snvecR-3.10.1/snvecR/README.md | 102 ++++++++++- snvecR-3.10.1/snvecR/build/vignette.rds |binary snvecR-3.10.1/snvecR/inst/doc/analyze_grid_td-ed.html | 112 ++++++------- snvecR-3.10.1/snvecR/inst/doc/compare_with_c.R |only snvecR-3.10.1/snvecR/inst/doc/compare_with_c.Rmd |only snvecR-3.10.1/snvecR/inst/doc/compare_with_c.html |only snvecR-3.10.1/snvecR/man/PT_ZB18a.Rd |only snvecR-3.10.1/snvecR/man/ZB23.Rd |only snvecR-3.10.1/snvecR/man/get_solution.Rd | 8 snvecR-3.10.1/snvecR/tests/testthat/_snaps/get_solution.md | 73 ++++++++ snvecR-3.10.1/snvecR/tests/testthat/_snaps/snvec.md | 64 +++++++ snvecR-3.10.1/snvecR/tests/testthat/test-get_solution.R | 14 + snvecR-3.10.1/snvecR/tests/testthat/test-globals.R |only snvecR-3.10.1/snvecR/tests/testthat/test-snvec.R | 25 ++ snvecR-3.10.1/snvecR/vignettes/compare_with_c.Rmd |only 22 files changed, 387 insertions(+), 129 deletions(-)
Title: Distances on Directed Graphs
Description: Distances on dual-weighted directed graphs using
priority-queue shortest paths (Padgham (2019) <doi:10.32866/6945>).
Weighted directed graphs have weights from A to B which may differ
from those from B to A. Dual-weighted directed graphs have two sets
of such weights. A canonical example is a street network to be used
for routing in which routes are calculated by weighting distances
according to the type of way and mode of transport, yet lengths of
routes must be calculated from direct distances.
Author: Mark Padgham [aut, cre],
Andreas Petutschnig [aut],
David Cooley [aut],
Robin Lovelace [ctb],
Andrew Smith [ctb],
Malcolm Morgan [ctb],
Andrea Gilardi [ctb] ,
Shane Saunders [cph] ,
Stanislaw Adaszewski [cph]
Maintainer: Mark Padgham <mark.padgham@email.com>
Diff between dodgr versions 0.4.1 dated 2024-07-07 and 0.4.2 dated 2025-03-06
DESCRIPTION | 12 +- MD5 | 118 ++++++++++---------- NEWS.md | 18 ++- R/centrality.R | 2 R/dists-nearest.R | 14 -- R/dists.R | 108 +++++++++++------- R/flows.R | 50 ++++++-- R/fund-cycles.R | 1 R/graph-contraction.R | 74 +++++++----- R/graph-conversion.R | 7 + R/graph-functions-misc.R | 35 ++++++ R/graph-functions.R | 11 + R/match-points.R | 7 - R/times.R | 10 - R/weight-streetnet.R | 186 +++++++++++++++++++++++--------- README.md | 47 +++++++- build/vignette.rds |binary inst/doc/dists-categorical.R | 2 inst/doc/dists-categorical.html | 18 +-- inst/doc/dodgr.R | 86 +++++++------- inst/doc/dodgr.html | 89 ++++++--------- inst/doc/flows.R | 72 ++++++------ inst/doc/flows.html | 8 - inst/doc/parallel.R | 2 inst/doc/parallel.html | 4 inst/doc/times.R | 28 ++-- inst/doc/times.html | 8 - man/dodgr.Rd | 1 man/dodgr_centrality.Rd | 2 man/dodgr_distances.Rd | 100 ++++++++++------- man/dodgr_dists.Rd | 100 ++++++++++------- man/dodgr_dists_categorical.Rd | 17 ++ man/dodgr_dists_nearest.Rd | 45 ++++++- man/dodgr_flows_aggregate.Rd | 34 ++++- man/dodgr_flows_disperse.Rd | 10 + man/dodgr_flows_si.Rd | 33 ++++- man/dodgr_times.Rd | 95 +++++++++------- man/dodgr_uncontract_graph.Rd | 13 ++ man/weight_streetnet.Rd | 140 ++++++++++++++++-------- src/deduplicate.cpp | 5 src/heaps/bheap.cpp | 1 src/heaps/fheap.cpp | 1 src/heaps/heap23.cpp | 1 src/heaps/triheap.cpp | 1 src/heaps/triheap_ext.cpp | 1 tests/testthat/test-cache.R | 45 ++++--- tests/testthat/test-centrality.R | 6 - tests/testthat/test-cycles.R | 2 tests/testthat/test-deduplicate.R | 4 tests/testthat/test-dists-categorical.R | 14 +- tests/testthat/test-dists-nearest.R | 6 - tests/testthat/test-dists.R | 82 +++++++++----- tests/testthat/test-flows.R | 6 - tests/testthat/test-graph-conversion.R | 6 - tests/testthat/test-graph-fns.R | 27 +++- tests/testthat/test-iso.R | 10 - tests/testthat/test-match-pts-fns.R | 7 - tests/testthat/test-save-load.R | 6 - tests/testthat/test-sc.R | 8 - tests/testthat/test-streetnet.R | 27 +++- 60 files changed, 1191 insertions(+), 682 deletions(-)
Title: Parallel Numerical Derivatives, Gradients, Jacobians, and
Hessians of Arbitrary Accuracy Order
Description: Numerical derivatives through finite-difference approximations
can be calculated using the 'pnd' package with parallel capabilities and
optimal step-size selection to improve accuracy. These functions facilitate
efficient computation of derivatives, gradients, Jacobians, and Hessians,
allowing for more evaluations to reduce the mathematical and machine errors.
Designed for compatibility with the 'numDeriv' package,
which has not received updates in several years, it introduces advanced features
such as computing derivatives of arbitrary order, improving
the accuracy of Hessian approximations by avoiding repeated differencing,
and parallelising slow functions on Windows, Mac, and Linux.
Author: Andrei Victorovitch Kostyrka [aut, cre]
Maintainer: Andrei Victorovitch Kostyrka <andrei.kostyrka@gmail.com>
Diff between pnd versions 0.0.7 dated 2025-03-01 and 0.0.8 dated 2025-03-06
DESCRIPTION | 6 +- MD5 | 36 ++++++++--------- NEWS.md | 7 +-- R/gradient.R | 15 +++---- R/helpers.R | 3 - R/zzz.R | 10 +++- build/partial.rdb |binary inst/CITATION | 16 +++---- inst/doc/compatibility-with-numDeriv.R | 13 +++--- inst/doc/compatibility-with-numDeriv.Rmd | 23 +++++++--- inst/doc/compatibility-with-numDeriv.html | 63 ++++++++++++++++++++---------- inst/doc/fast-and-accurate.html | 2 inst/doc/step-size-selection.html | 2 man/GenD.Rd | 2 man/Grad.Rd | 2 man/Jacobian.Rd | 2 man/checkDimensions.Rd | 2 tests/testthat/Rplots.pdf |binary vignettes/compatibility-with-numDeriv.Rmd | 23 +++++++--- 19 files changed, 136 insertions(+), 91 deletions(-)
Title: Latent Space Item Response Model
Description: Analysis of dichotomous and continuous response data using latent factor by both 1PL LSIRM and 2PL LSIRM as described in Jeon et al. (2021) <doi:10.1007/s11336-021-09762-5>. It includes original 1PL LSIRM and 2PL LSIRM provided for binary response data and its extension for continuous response data. Bayesian model selection with spike-and-slab prior and method for dealing data with missing value under missing at random, missing completely at random are also supported. Various diagnostic plots are available to inspect the latent space and summary of estimated parameters.
Author: Dongyoung Go [aut],
Gwanghee Kim [aut, cre],
Jina Park [aut],
Ickhoon Jin [ctb],
Minjeong Jeon [ctb]
Maintainer: Gwanghee Kim <musagh08@yonsei.ac.kr>
Diff between lsirm12pl versions 1.3.3 dated 2024-08-28 and 1.3.4 dated 2025-03-06
lsirm12pl-1.3.3/lsirm12pl/data/BFPT.csv |only lsirm12pl-1.3.3/lsirm12pl/data/TDRI.csv |only lsirm12pl-1.3.4/lsirm12pl/DESCRIPTION | 18 lsirm12pl-1.3.4/lsirm12pl/MD5 | 10 lsirm12pl-1.3.4/lsirm12pl/R/lsirm.R | 561 +++++++++++++---- lsirm12pl-1.3.4/lsirm12pl/R/lsirm1pl_fixed_gamma_mar.R | 300 ++++----- lsirm12pl-1.3.4/lsirm12pl/data/BFPT.csv.gz |only lsirm12pl-1.3.4/lsirm12pl/data/TDRI.csv.gz |only 8 files changed, 613 insertions(+), 276 deletions(-)
Title: Data Visualisation on 'Lifemap' Tree
Description: Allow to visualise data on the NCBI phylogenetic tree as presented in Lifemap <https://lifemap.cnrs.fr/>. It takes as input a dataframe with at least a "taxid" column containing NCBI format TaxIds and allows to draw multiple layers with different visualisation tools.
Author: Cassandra Bompard [aut],
Damien M. de Vienne [aut] ,
Julien Barnier [aut] ,
Aurelie Siberchicot [ctb, cre]
Maintainer: Aurelie Siberchicot <aurelie.siberchicot@univ-lyon1.fr>
Diff between LifemapR versions 1.1.4 dated 2024-07-31 and 1.1.5 dated 2025-03-06
DESCRIPTION | 21 - MD5 | 38 +- R/build_Lifemap.R | 178 ++++----- R/create_matrix.R | 19 - R/data.R | 246 ++++++------- R/display_map.R | 50 +- R/draw_Lifemap.R | 850 +++++++++++++++++++++++----------------------- R/lifemap_obj.R | 16 R/lm_branches.R | 6 R/lm_piecharts.R | 1 R/make_newick.R | 6 README.md | 55 +- build/vignette.rds |binary inst/doc/runLifemapR.R | 116 +++--- inst/doc/runLifemapR.Rmd | 15 inst/doc/runLifemapR.html | 29 - man/build_Lifemap.Rd | 6 man/display_map.Rd | 10 man/draw_Lifemap.Rd | 4 vignettes/runLifemapR.Rmd | 15 20 files changed, 835 insertions(+), 846 deletions(-)
Title: Helpers for Model Coefficients Tibbles
Description: Provides suite of functions to work with regression model
'broom::tidy()' tibbles. The suite includes functions to group
regression model terms by variable, insert reference and header rows
for categorical variables, add variable labels, and more.
Author: Joseph Larmarange [aut, cre] ,
Daniel D. Sjoberg [aut]
Maintainer: Joseph Larmarange <joseph@larmarange.net>
Diff between broom.helpers versions 1.19.0 dated 2025-01-29 and 1.20.0 dated 2025-03-06
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Title: Classes and Methods for Fast Memory-Efficient Boolean Selections
Description: Provided are classes for boolean and skewed boolean vectors,
fast boolean methods, fast unique and non-unique integer sorting,
fast set operations on sorted and unsorted sets of integers, and
foundations for ff (range index, compression, chunked processing).
Author: Michael Chirico [aut, cre],
Jens Oehlschlaegel [aut],
Brian Ripley [ctb]
Maintainer: Michael Chirico <MichaelChirico4@gmail.com>
Diff between bit versions 4.5.0.1 dated 2024-12-03 and 4.6.0 dated 2025-03-06
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Title: Systematic Comparison of Trip Distribution Laws and Models
Description: The main purpose of this package is to propose a rigorous framework to fairly compare trip distribution laws and models as described in Lenormand et al. (2016) <doi:10.1016/j.jtrangeo.2015.12.008>.
Author: Maxime Lenormand [aut, cre]
Maintainer: Maxime Lenormand <maxime.lenormand@inrae.fr>
Diff between TDLM versions 1.1.0 dated 2025-01-07 and 1.1.1 dated 2025-03-06
DESCRIPTION | 6 - MD5 | 18 ++-- NEWS.md | 11 ++- R/extract_opportunities.R | 8 ++ R/run_law.R | 9 ++ R/run_law_model.R | 9 ++ R/run_model.R | 9 ++ README.md | 18 ++-- build/vignette.rds |binary inst/doc/TDLM.html | 168 +++++++++++++++++++++++----------------------- 10 files changed, 149 insertions(+), 107 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-09-03 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-01-17 1.0.4
2021-11-29 1.0.3
2020-06-13 1.0.2
2016-10-31 1.0.1
2016-03-29 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-03-28 0.99.19.1
2021-10-18 0.99.19
2017-03-28 0.99.18
2016-07-01 0.99.17
2015-04-29 0.99.16
2015-02-13 0.99.15
2015-01-08 0.99.14
2014-11-18 0.99.13
2014-08-11 0.99.12
2014-03-01 0.99.11
2013-12-31 0.99.10