Title: Estimation of Forest Variables using the FIA Database
Description: The goal of 'rFIA' is to increase the accessibility and use of the United States Forest Services (USFS) Forest Inventory and Analysis (FIA) Database by providing a user-friendly, open source toolkit to easily query and analyze FIA Data. Designed to accommodate a wide range of potential user objectives, 'rFIA' simplifies the estimation of forest variables from the FIA Database and allows all R users (experts and newcomers alike) to unlock the flexibility inherent to the Enhanced FIA design. Specifically, 'rFIA' improves accessibility to the spatial-temporal estimation capacity of the FIA Database by producing space-time indexed summaries of forest variables within user-defined population boundaries. Direct integration with other popular R packages (e.g., 'dplyr', 'tidyr', and 'sf') facilitates efficient space-time query and data summary, and supports common data representations and API design. The package implements design-based estimation procedures outlined by Bechtold & Patterson [...truncated...]
Author: Jeffrey Doser [aut, cre],
Hunter Stanke [aut],
Andrew Finley [aut]
Maintainer: Jeffrey Doser <jwdoser@ncsu.edu>
Diff between rFIA versions 1.1.2 dated 2025-09-29 and 1.1.3 dated 2026-04-30
DESCRIPTION | 10 MD5 | 24 - NAMESPACE | 1 NEWS.md | 5 R/biomassStarter.R | 7 R/fsi.R | 841 +++++++++++++++++++++++++------------------------- R/fsiHelper.R | 861 ++++++++++++++++++++++++++-------------------------- R/fsiStarter.R | 195 ++++++----- R/getDesignInfo.R | 6 R/invasiveStarter.R | 2 R/tpa.R | 3 R/tpaStarter.R | 3 R/util.R | 430 ++++--------------------- 13 files changed, 1051 insertions(+), 1337 deletions(-)
Title: Tools for Multilayer and Single Layer Network Modeling
Description: Estimation and bootstrap utilities for single layer and multilayer
Mixed Graphical Models, including functions for centrality, bridge metrics,
membership stability, and plotting (De Martino et al. (2026) <doi:10.48550/arXiv.2602.05716>).
Author: Maria De Martino [aut, cre],
Caterina Gregorio [aut],
Adrien Perigord [ctb],
Hudson Golino [ctb],
Jonas Haslbeck [ctb]
Maintainer: Maria De Martino <maria.demartino@uniud.it>
Diff between MixMashNet versions 0.6.0 dated 2026-03-03 and 1.0.0 dated 2026-04-30
MixMashNet-0.6.0/MixMashNet/R/mixmashnet-plot.R |only MixMashNet-0.6.0/MixMashNet/R/mixmashnet-print.R |only MixMashNet-0.6.0/MixMashNet/R/mixmashnet-summary.R |only MixMashNet-0.6.0/MixMashNet/R/nhgh_data.R |only MixMashNet-0.6.0/MixMashNet/data/nhgh_data.rda |only MixMashNet-0.6.0/MixMashNet/man/nhgh_data.Rd |only MixMashNet-0.6.0/MixMashNet/man/plot.mixmashnet.Rd |only MixMashNet-0.6.0/MixMashNet/man/print.mixmashnet.Rd |only MixMashNet-0.6.0/MixMashNet/man/summary.mixmashnet.Rd |only MixMashNet-1.0.0/MixMashNet/DESCRIPTION | 14 MixMashNet-1.0.0/MixMashNet/MD5 | 101 +- MixMashNet-1.0.0/MixMashNet/NAMESPACE | 40 - MixMashNet-1.0.0/MixMashNet/NEWS.md | 9 MixMashNet-1.0.0/MixMashNet/R/bacteremia.R | 5 MixMashNet-1.0.0/MixMashNet/R/bridge_metrics.R | 393 ++++++---- MixMashNet-1.0.0/MixMashNet/R/community_scores.R | 152 ++- MixMashNet-1.0.0/MixMashNet/R/find_bridge_communities.R | 247 ++++-- MixMashNet-1.0.0/MixMashNet/R/find_bridge_layers.R |only MixMashNet-1.0.0/MixMashNet/R/get_centrality.R |only MixMashNet-1.0.0/MixMashNet/R/get_edges.R |only MixMashNet-1.0.0/MixMashNet/R/globals.R | 3 MixMashNet-1.0.0/MixMashNet/R/layer_slice.R |only MixMashNet-1.0.0/MixMashNet/R/membershipStab.R | 181 ++++ MixMashNet-1.0.0/MixMashNet/R/membershipStab_plot.R | 2 MixMashNet-1.0.0/MixMashNet/R/mgm_masked.R | 2 MixMashNet-1.0.0/MixMashNet/R/mixMN.R | 109 +- MixMashNet-1.0.0/MixMashNet/R/mixMN_from_wadj.R | 48 - MixMashNet-1.0.0/MixMashNet/R/multimixMN.R | 84 +- MixMashNet-1.0.0/MixMashNet/R/nhanes.R | 5 MixMashNet-1.0.0/MixMashNet/R/plot-network.R | 48 + MixMashNet-1.0.0/MixMashNet/R/plot.R |only MixMashNet-1.0.0/MixMashNet/R/plotCentrality.R | 4 MixMashNet-1.0.0/MixMashNet/R/plotInterlayer.R | 23 MixMashNet-1.0.0/MixMashNet/R/print.R |only MixMashNet-1.0.0/MixMashNet/R/summary.R |only MixMashNet-1.0.0/MixMashNet/R/update_palette.R | 275 ++++-- MixMashNet-1.0.0/MixMashNet/R/utils-mgm.R | 3 MixMashNet-1.0.0/MixMashNet/R/utils_clustering.R |only MixMashNet-1.0.0/MixMashNet/README.md | 65 - MixMashNet-1.0.0/MixMashNet/man/bacteremia.Rd | 5 MixMashNet-1.0.0/MixMashNet/man/bridge_metrics.Rd | 4 MixMashNet-1.0.0/MixMashNet/man/community_scores.Rd | 18 MixMashNet-1.0.0/MixMashNet/man/figures/README-unnamed-chunk-10-1.png |binary MixMashNet-1.0.0/MixMashNet/man/figures/README-unnamed-chunk-11-1.png |binary MixMashNet-1.0.0/MixMashNet/man/figures/README-unnamed-chunk-12-1.png |binary MixMashNet-1.0.0/MixMashNet/man/figures/README-unnamed-chunk-13-1.png |binary MixMashNet-1.0.0/MixMashNet/man/figures/README-unnamed-chunk-14-1.png |only MixMashNet-1.0.0/MixMashNet/man/figures/README-unnamed-chunk-15-1.png |only MixMashNet-1.0.0/MixMashNet/man/figures/README-unnamed-chunk-5-1.png |only MixMashNet-1.0.0/MixMashNet/man/figures/README-unnamed-chunk-7-1.png |only MixMashNet-1.0.0/MixMashNet/man/figures/README-unnamed-chunk-9-1.png |binary MixMashNet-1.0.0/MixMashNet/man/find_bridge_communities.Rd | 43 - MixMashNet-1.0.0/MixMashNet/man/find_bridge_layers.Rd |only MixMashNet-1.0.0/MixMashNet/man/get_centrality.Rd |only MixMashNet-1.0.0/MixMashNet/man/get_edges.Rd |only MixMashNet-1.0.0/MixMashNet/man/layer_slice.Rd |only MixMashNet-1.0.0/MixMashNet/man/membershipStab.Rd | 10 MixMashNet-1.0.0/MixMashNet/man/mixMN.Rd | 33 MixMashNet-1.0.0/MixMashNet/man/multimixMN.Rd | 29 MixMashNet-1.0.0/MixMashNet/man/nhanes.Rd | 5 MixMashNet-1.0.0/MixMashNet/man/plot.mixMN_fit.Rd |only MixMashNet-1.0.0/MixMashNet/man/plot.multimixMN_fit.Rd |only MixMashNet-1.0.0/MixMashNet/man/print.mixMN_fit.Rd |only MixMashNet-1.0.0/MixMashNet/man/print.multimixMN_fit.Rd |only MixMashNet-1.0.0/MixMashNet/man/summary.mixMN_fit.Rd |only MixMashNet-1.0.0/MixMashNet/man/summary.multimixMN_fit.Rd |only MixMashNet-1.0.0/MixMashNet/man/update_palette.Rd | 71 + 67 files changed, 1416 insertions(+), 615 deletions(-)
Title: Integration Unit Tests for Pharmacoepidemiological Studies
Description: An R interface to load testing data in the 'OMOP' Common Data Model ('CDM'). An input file, csv or xlsx, can be converted to a 'CDMConnector' object. This object can be used to execute and test studies that use the 'CDM' <https://www.ohdsi.org/data-standardization/>.
Author: Cesar Barboza [aut] ,
Ioanna Nika [aut],
Ger Inberg [aut, cre] ,
Adam Black [aut]
Maintainer: Ger Inberg <g.inberg@erasmusmc.nl>
Diff between TestGenerator versions 0.6.0 dated 2026-04-16 and 0.7.0 dated 2026-04-30
DESCRIPTION | 9 +++--- MD5 | 17 +++++++---- NEWS.md | 10 ++++++ R/patients.R | 60 ++++++++++++++++++++++++++++++++++++++--- README.md | 36 ++++++++++++++---------- build |only inst/doc |only man/patientsCDM.Rd | 2 - tests/testthat/test-patients.R | 1 vignettes |only 10 files changed, 105 insertions(+), 30 deletions(-)
Title: Assessing Package Test Reliability and Quality
Description: A reliable and validated tool that calculates unit test coverage for R packages with standard testing frameworks and non-standard testing frameworks.
Author: Edward Gillian [cre, aut] ,
Hugo Bottois [aut] ,
Paulin Charliquart [aut],
Andre Couturier [aut],
Sanofi [cph, fnd]
Maintainer: Edward Gillian <edward.gillian-ext@sanofi.com>
Diff between test.assessr versions 2.0.0 dated 2026-04-16 and 2.1.0 dated 2026-04-30
DESCRIPTION | 6 - MD5 | 22 ++-- NEWS.md | 17 ++- R/get_package_coverage.R | 50 +++++---- R/run_covr_modes.R | 151 ++++++++++++---------------- R/run_covr_skip_stf.R | 4 man/create_empty_covr_list.Rd | 5 man/get_package_coverage.Rd | 17 ++- tests/testthat/test-get_package_coverage.R | 122 ++++++++++++++++++++++ tests/testthat/test-install_package_local.R | 5 tests/testthat/test-run_covr_modes.R | 17 ++- tests/testthat/test-run_covr_skip_stf.R | 4 12 files changed, 287 insertions(+), 133 deletions(-)
Title: Real-Time Disease Surveillance
Description: Supports modelling real-time case data to facilitate the real-time
surveillance of infectious diseases and other point phenomena. The package provides automated computational grid generation over
an area of interest with methods to map covariates between geographies, model fitting including spatially aggregated case counts,
and predictions and visualisation. Both Bayesian and maximum likelihood methods are provided. Log-Gaussian Cox Processes are described by
Diggle et al. (2013) <doi:10.1214/13-STS441> and we provide both the low-rank approximation for Gaussian processes
described by Solin and Särkkä (2020) <doi:10.1007/s11222-019-09886-w> and Riutort-Mayol et al (2023) <doi:10.1007/s11222-022-10167-2> and the
nearest neighbour Gaussian process described by Datta et al (2016) <doi:10.1080/01621459.2015.1044091>.
Author: Sam Watson [aut, cre]
Maintainer: Sam Watson <s.i.watson@bham.ac.uk>
Diff between rts2 versions 0.10.2 dated 2026-02-02 and 1.0.2 dated 2026-04-30
DESCRIPTION | 16 MD5 | 33 NAMESPACE | 6 R/RcppExports.R | 24 R/disaggregate.R | 2 R/griddata_class.R | 1189 ++++++++++++++++------- R/rts2-package.R | 3 build/partial.rdb |binary inst/include |only man/disaggregate_covariate.Rd | 70 - man/disaggregate_positive.Rd | 88 - man/flat_disaggregate.Rd | 38 man/grid.Rd | 181 ++- src/RcppExports.cpp | 85 + src/region_model.cpp | 1898 ++++++++++++++++++++++++++++++++++---- src/region_model.h | 91 + src/stanExports_rtsbayes.cc | 34 src/stanExports_rtslgcp_region.cc | 34 18 files changed, 3010 insertions(+), 782 deletions(-)
Title: Convert Data among QTL Mapping Packages
Description: Functions to convert data structures among the 'qtl2', 'qtl', and 'DOQTL' packages for mapping quantitative trait loci (QTL).
Author: Karl W Broman [aut, cre]
Maintainer: Karl W Broman <broman@wisc.edu>
Diff between qtl2convert versions 0.30 dated 2024-04-04 and 0.32 dated 2026-04-30
DESCRIPTION | 13 +++++++------ MD5 | 8 ++++---- NEWS.md | 8 ++++++++ src/RcppExports.cpp | 5 +++++ src/encode_geno.cpp | 2 +- 5 files changed, 25 insertions(+), 11 deletions(-)
Title: Estimation of Relative Risks, Risk Differences, and Marginal
Effects from Mixed Models Using Marginal Standardization
Description: Estimation of relative risks, risk differences, and
partial effects from mixed model. Marginalisation over random effect terms is accomplished using Markov Chain Monte Carlo.
Author: Sam Watson [aut, cre]
Maintainer: Sam Watson <S.I.Watson@bham.ac.uk>
Diff between marginme versions 0.1.0 dated 2025-07-28 and 0.1.1 dated 2026-04-30
DESCRIPTION | 12 +-- MD5 | 18 ++-- NAMESPACE | 1 R/adjrr.R | 76 ++++++++----------- R/marginal.R |only man/confint.margin.Rd | 85 ++++++++++----------- man/glmm_marginal.Rd |only man/margin.Rd | 195 ++++++++++++++++++++++++-------------------------- man/print.margin.Rd | 61 +++++++-------- man/summary.margin.Rd | 63 +++++++--------- man/trial_data.Rd | 20 ++--- 11 files changed, 257 insertions(+), 274 deletions(-)
Title: Fast and Efficient Processing of PAM Data
Description: Processing Chlorophyll Fluorescence & P700 Absorbance data. Four models are provided for the regression of Pi curves, which can be compared with each other in order to select the most suitable model for the data set. Control plots ensure the successful verification of each regression. Bundled output of alpha, ETRmax, Ik etc. enables fast and reliable further processing of the data.
Author: Julien Boehm [cre, aut] ,
Philipp Schrag [aut]
Maintainer: Julien Boehm <julien.boehm@uni-rostock.de>
Diff between pam versions 2.2.0 dated 2026-04-23 and 2.2.1 dated 2026-04-30
DESCRIPTION | 6 +- MD5 | 64 +++++++++++------------ R/compare_regression_models.R | 2 R/device_dual_pam.R | 2 R/device_dual_pam_single_channel_fluo.R | 2 R/device_dual_pam_single_channel_p700.R | 2 R/device_junior_pam.R | 2 R/device_pam_2500.R | 2 R/device_universal_data.R | 2 R/model_eilers_peeters.R | 4 - R/model_platt.R | 4 - R/model_vollenweider.R | 4 - R/model_walsby.R | 4 - R/plot.R | 4 - R/write_model_result_csv.R | 2 man/combo_plot_control.Rd | 2 man/compare_regression_models_ETR_I.Rd | 2 man/eilers_peeters_generate_regression_ETR_I.Rd | 2 man/eilers_peeters_generate_regression_ETR_II.Rd | 2 man/platt_generate_regression_ETR_I.Rd | 2 man/platt_generate_regression_ETR_II.Rd | 2 man/plot_control.Rd | 2 man/read_dual_pam_data.Rd | 2 man/read_dual_pam_single_channel_fluo_data.Rd | 2 man/read_dual_pam_single_channel_p700_data.Rd | 2 man/read_junior_pam_data.Rd | 2 man/read_pam_2500_data.Rd | 2 man/read_universal_data.Rd | 2 man/vollenweider_generate_regression_ETR_I.Rd | 2 man/vollenweider_generate_regression_ETR_II.Rd | 2 man/walsby_generate_regression_ETR_I.Rd | 2 man/walsby_generate_regression_ETR_II.Rd | 2 man/write_model_result_csv.Rd | 2 33 files changed, 71 insertions(+), 71 deletions(-)
Title: R Client for the 'OMOPHub' Medical Vocabulary API
Description: Provides an R interface to the 'OMOPHub' API for accessing
'OHDSI ATHENA' standardized medical vocabularies. Supports concept search,
semantic search using neural embeddings, concept similarity, vocabulary
exploration, hierarchy navigation, relationship queries, concept
mappings, and FHIR-to-OMOP concept resolution with automatic pagination.
Author: Alex Chen [aut, cre, cph],
Observational Health Data Science and Informatics [cph]
Maintainer: Alex Chen <alex@omophub.com>
Diff between omophub versions 1.6.0 dated 2026-04-14 and 1.7.0 dated 2026-04-30
DESCRIPTION | 6 MD5 | 43 ++-- NAMESPACE | 4 NEWS.md | 31 +++ R/fhir.R | 209 +++++++++++++++++++++++ R/fhir_interop.R |only README.md | 154 +++++++++++++++-- inst/doc/getting-started.R | 69 +++++++ inst/doc/getting-started.Rmd | 111 ++++++++++++ inst/doc/getting-started.html | 99 +++++++++++ inst/examples/basic_usage.R | 8 inst/examples/error_handling.R | 252 +++++++++++++--------------- inst/examples/fhir_interop.R |only inst/examples/fhir_resolver.R |only inst/examples/map_between_vocabularies.R | 6 inst/examples/navigate_hierarchy.R | 86 ++++++--- inst/examples/search_concepts.R | 6 man/FhirResource.Rd | 16 + man/fhir_batch_to_tibble.Rd |only man/fhir_resolve.Rd |only man/fhir_resolve_batch.Rd |only man/fhir_resolve_codeable_concept.Rd |only man/omophub_fhir_url.Rd |only tests/testthat/test-fhir-integration.R | 56 ++++++ tests/testthat/test-fhir-interop.R |only tests/testthat/test-fhir.R | 271 +++++++++++++++++++++++++++++++ vignettes/getting-started.Rmd | 111 ++++++++++++ 27 files changed, 1327 insertions(+), 211 deletions(-)
Title: Compute Decision Interval and Average Run Length for CUSUM
Charts
Description: Computation of decision intervals (H) and average run lengths (ARL) for CUSUM charts. Details of the method are seen in Hawkins and Olwell (2012): Cumulative sum charts and charting for quality improvement, Springer Science & Business Media.
Author: Douglas M. Hawkins [aut],
David H. Olwell [aut],
Boxiang Wang [aut, cre]
Maintainer: Boxiang Wang <boxiang-wang@uiowa.edu>
Diff between CUSUMdesign versions 1.1.6 dated 2026-04-20 and 1.1.7 dated 2026-04-30
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- src/ANYSUBS.f | 6 +++++- 3 files changed, 11 insertions(+), 7 deletions(-)
Title: Bivariate Laplace Transforms, Stochastic Orders, and Entropy
Measures in Reliability
Description: Implements methods for bivariate and univariate Laplace transforms
of residual lives and reversed residual lives, associated stochastic ordering
concepts, and entropy measures for reliability analysis. The package covers:
(1) Bivariate Laplace transform of residual lives and stochastic comparisons
based on the bivariate Laplace transform order of residual lives (BLt-rl),
including weak bivariate hazard rate, mean residual life, and relative mean
residual life orders, nonparametric estimation, and NBUHR/NWUHR aging class
characterisation; Jayalekshmi, Rajesh, and Nair (2022)
"Bivariate Laplace Transform of Residual Lives and Their Properties"
<doi:10.1080/03610926.2022.2085874>;
(2) Bivariate Laplace transform order of reversed residual lives (BLt-Rrl),
reversed hazard gradient, reversed mean residual life, and the associated
stochastic orders (weak bivariate reversed hazard rate, weak bivariate
reversed mean residual life); Jayalekshmi, Rajesh, and Nair (2022)
"Bivariate Laplace [...truncated...]
Author: Mahesh Divakaran [aut, cre] ,
S. Jayalekshmi [aut, ctb] ,
G. Rajesh [aut] ,
N. Unnikrishnan Nair [aut]
Maintainer: Mahesh Divakaran <imaheshdivakaran@gmail.com>
Diff between BivLaplaceRL versions 0.2.0 dated 2026-04-29 and 1.0.0 dated 2026-04-30
BivLaplaceRL-0.2.0/BivLaplaceRL/man/np_residual_info_gen.Rd |only BivLaplaceRL-0.2.0/BivLaplaceRL/man/plot_regf.Rd |only BivLaplaceRL-0.2.0/BivLaplaceRL/man/regf_characterise.Rd |only BivLaplaceRL-0.2.0/BivLaplaceRL/man/regf_profile.Rd |only BivLaplaceRL-0.2.0/BivLaplaceRL/man/residual_entropy.Rd |only BivLaplaceRL-0.2.0/BivLaplaceRL/man/residual_info_gen.Rd |only BivLaplaceRL-0.2.0/BivLaplaceRL/man/sim_regf.Rd |only BivLaplaceRL-1.0.0/BivLaplaceRL/DESCRIPTION | 62 - BivLaplaceRL-1.0.0/BivLaplaceRL/MD5 | 46 - BivLaplaceRL-1.0.0/BivLaplaceRL/NAMESPACE | 14 BivLaplaceRL-1.0.0/BivLaplaceRL/NEWS.md | 23 BivLaplaceRL-1.0.0/BivLaplaceRL/R/BivLaplaceRL-package.R | 38 - BivLaplaceRL-1.0.0/BivLaplaceRL/R/plotting.R | 61 - BivLaplaceRL-1.0.0/BivLaplaceRL/R/residual_entropy.R | 346 ---------- BivLaplaceRL-1.0.0/BivLaplaceRL/R/univariate.R |only BivLaplaceRL-1.0.0/BivLaplaceRL/README.md | 71 +- BivLaplaceRL-1.0.0/BivLaplaceRL/inst/doc/introduction.R | 96 +- BivLaplaceRL-1.0.0/BivLaplaceRL/inst/doc/introduction.Rmd | 147 ++-- BivLaplaceRL-1.0.0/BivLaplaceRL/inst/doc/introduction.html | 274 +++---- BivLaplaceRL-1.0.0/BivLaplaceRL/man/BivLaplaceRL-package.Rd | 41 - BivLaplaceRL-1.0.0/BivLaplaceRL/man/hazard_rate.Rd |only BivLaplaceRL-1.0.0/BivLaplaceRL/man/hr_order.Rd |only BivLaplaceRL-1.0.0/BivLaplaceRL/man/info_gen_function.Rd | 2 BivLaplaceRL-1.0.0/BivLaplaceRL/man/lt_residual.Rd |only BivLaplaceRL-1.0.0/BivLaplaceRL/man/lt_rl_order.Rd |only BivLaplaceRL-1.0.0/BivLaplaceRL/man/mean_residual.Rd |only BivLaplaceRL-1.0.0/BivLaplaceRL/man/mrl_order.Rd |only BivLaplaceRL-1.0.0/BivLaplaceRL/man/np_lt_residual.Rd |only BivLaplaceRL-1.0.0/BivLaplaceRL/man/shannon_entropy.Rd | 5 BivLaplaceRL-1.0.0/BivLaplaceRL/tests/testthat/test-residual_entropy.R | 80 -- BivLaplaceRL-1.0.0/BivLaplaceRL/tests/testthat/test-univariate.R |only BivLaplaceRL-1.0.0/BivLaplaceRL/vignettes/introduction.Rmd | 147 ++-- 32 files changed, 491 insertions(+), 962 deletions(-)
Title: Legends for Maps
Description: Create legends for maps and other graphics. Thematic maps need to
be accompanied by legible legends to be fully comprehensible. This package
offers a wide range of legends useful for cartography, some of which may
also be useful for other types of graphics.
Author: Timothee Giraud [cre, aut]
Maintainer: Timothee Giraud <timothee.giraud@cnrs.fr>
Diff between maplegend versions 0.6.2 dated 2026-04-14 and 0.6.3 dated 2026-04-30
DESCRIPTION | 6 MD5 | 10 - NEWS.md | 6 R/leg.R | 4 R/lg_utils.R | 4 inst/tinytest/tests.R | 384 +++++++++++++++++++++++++------------------------- 6 files changed, 211 insertions(+), 203 deletions(-)
Title: Detecting Extremal Values in a Normal Linear Model
Description: Provides a method to detect values poorly explained by a Gaussian linear model. The procedure is based on the maximum of the absolute value of the studentized residuals, which is a parameter-free statistic. This approach generalizes several procedures used to detect abnormal values during longitudinal monitoring of biological markers. For methodological details, see: Berthelot G., Saulière G., Dedecker J. (2025). "DEViaN-LM An R Package for Detecting Abnormal Values in the Gaussian Linear Model". HAL Id: hal-05230549. <https://hal.science/hal-05230549>.
Author: Guillaume Sauliere [aut] ,
Geoffroy Berthelot [aut, cre] ,
Jerome Dedecker [aut]
Maintainer: Geoffroy Berthelot <geoffroy.berthelot@insep.fr>
Diff between devianLM versions 1.0.7 dated 2025-11-21 and 1.1.0 dated 2026-04-30
DESCRIPTION | 10 +- MD5 | 25 +++--- NAMESPACE | 1 NEWS.md | 8 ++ R/RcppExports.R | 14 +-- R/data.R | 78 ++++++++++---------- R/devianLM-package.R |only R/devianlm_stats.R | 86 ++++++++++++++++------ R/print.R |only build |only man/devianLM-package.Rd | 62 ++++++++-------- man/devianlm_stats.Rd | 139 +++++++++++++++++++----------------- man/get_devianlm_threshold.Rd | 72 +++++++++--------- man/salary.Rd | 94 ++++++++++++------------ src/devianlm_cpp.cpp | 161 ++++++++++++++++++++++++++++++------------ 15 files changed, 447 insertions(+), 303 deletions(-)
Title: Selection, Reverse-Engineering and Prediction in Cascade
Networks
Description: A modeling tool allowing gene selection, reverse engineering, and prediction in cascade networks. Jung, N., Bertrand, F., Bahram, S., Vallat, L., and Maumy-Bertrand, M. (2014) <doi:10.1093/bioinformatics/btt705>.
Author: Frederic Bertrand [cre, aut] ,
Myriam Maumy-Bertrand [aut] ,
Laurent Vallat [ctb],
Nicolas Jung [ctb]
Maintainer: Frederic Bertrand <frederic.bertrand@lecnam.net>
Diff between Cascade versions 2.3 dated 2025-09-19 and 2.4 dated 2026-04-30
Cascade-2.3/Cascade/inst/doc/E-MTAB-1475_re-analysis.pdf |only Cascade-2.3/Cascade/inst/doc/E-MTAB-1475_re-analysis.pdf.asis |only Cascade-2.3/Cascade/vignettes/E-MTAB-1475_re-analysis.pdf.asis |only Cascade-2.4/Cascade/DESCRIPTION | 16 +- Cascade-2.4/Cascade/MD5 | 33 +--- Cascade-2.4/Cascade/NAMESPACE | 23 +-- Cascade-2.4/Cascade/NEWS.md | 8 + Cascade-2.4/Cascade/R/Cascade-package.R | 13 - Cascade-2.4/Cascade/R/micro_array-network.R | 2 Cascade-2.4/Cascade/R/micro_array.R | 37 +--- Cascade-2.4/Cascade/R/network.R | 7 Cascade-2.4/Cascade/README.md | 76 +++++----- Cascade-2.4/Cascade/build/partial.rdb |binary Cascade-2.4/Cascade/build/vignette.rds |binary Cascade-2.4/Cascade/inst/_pkgdown.yml | 2 Cascade-2.4/Cascade/inst/doc/Cascade.pdf |binary Cascade-2.4/Cascade/man/Cascade-package.Rd | 4 Cascade-2.4/Cascade/man/evolution-network-method.Rd | 3 Cascade-2.4/Cascade/tests/testthat/Rplots.pdf |binary 19 files changed, 114 insertions(+), 110 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-09-15 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-06-08 0.1.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-08-22 0.9.1
2015-09-03 0.9
2013-12-08 0.8.1
2012-07-31 0.7.5
2012-04-20 0.7.0
2011-12-21 0.6.2
2010-08-25 0.5-4
2010-01-28 0.5-3
2009-10-30 0.5-2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-11-03 1.0.1
Title: An R Package for Evaluating Expertise Indices for Research
Strength Assessment
Description: Institutional performance assessment remains a key challenge to a multitude of stakeholders. Existing indicators such as h-type indicators, g-type indicators, and many others do not reflect expertise of institutions that defines their research portfolio. The package offers functionality to compute and visualise two novel indices: the x-index and the xd-index. The x-index evaluates an institution's scholarly expertise within a specific discipline or field, while the xd-index provides a broader assessment of overall scholarly expertise considering an institution's publication pattern and strengths across coarse thematic areas. These indices offer a nuanced understanding of institutional research capabilities, aiding stakeholders in research management and resource allocation decisions. Lathabai, H.H., Nandy, A., and Singh, V.K. (2021) <doi:10.1007/s11192-021-04188-3>. Nandy, A., Lathabai, H.H., and Singh, V.K. (2023) <doi:10.5281/zenodo.8305585>. This package provides the h-, [...truncated...]
Author: Nilabhra R Das [cre, aut] ,
Abhirup Nandy [aut]
Maintainer: Nilabhra R Das <nr.das@yahoo.com>
Diff between xxdi versions 1.3.1 dated 2026-01-12 and 1.26.4 dated 2026-04-30
DESCRIPTION | 20 ++++++++++---------- MD5 | 29 ++++++++++++++++------------- NAMESPACE | 6 +----- NEWS.md | 9 +++++++++ R/g_index.R | 21 +++++++-------------- R/h_index.R | 26 ++++++++++---------------- R/ivw_xd_index.R | 28 +++++++--------------------- R/x_index.R | 26 ++++++-------------------- R/xc_index.R | 35 +++++++++++++---------------------- R/xd_index.R | 12 +++++------- R/xo_index.R |only inst |only man/ivw_xd_index.Rd | 2 +- man/x_index.Rd | 2 +- man/xc_index.Rd | 5 ++--- man/xd_index.Rd | 2 +- man/xo_index.Rd |only 17 files changed, 89 insertions(+), 134 deletions(-)
Title: Tidy Integration of Large Language Models
Description: A tidy interface for integrating large language model (LLM) APIs such as 'Claude', 'OpenAI', 'Gemini', 'Mistral', and local models via 'Ollama' into R workflows. The package supports text, image, audio, video, and document interactions; a unified media interface for attaching inline files or uploading to provider file stores; batch request APIs for cost-efficient large-scale processing; and a pipeline-oriented interface for seamless integration into data workflows. Web services are available at <https://www.anthropic.com>, <https://openai.com>, <https://aistudio.google.com/>, <https://mistral.ai/> and <https://ollama.com>.
Author: Eduard Bruell [aut, cre],
Jia Zhang [ctb]
Maintainer: Eduard Bruell <eduard.bruell@zew.de>
Diff between tidyllm versions 0.4.0 dated 2026-03-17 and 0.5.0 dated 2026-04-30
tidyllm-0.4.0/tidyllm/tests/testthat/claude/api.anthropic.com/v1/messages-e050b5-POST.R |only tidyllm-0.4.0/tidyllm/tests/testthat/deepseek/api.deepseek.com/chat/completions-051628-POST.R |only tidyllm-0.4.0/tidyllm/tests/testthat/groq/api.groq.com/openai/v1/chat/completions-0b59b0-POST.R |only tidyllm-0.4.0/tidyllm/tests/testthat/mistral/api.mistral.ai/v1/chat/completions-2551cb-POST.R |only tidyllm-0.4.0/tidyllm/tests/testthat/ollama/localhost-11434/api/chat-1e1974-POST.R |only tidyllm-0.4.0/tidyllm/tests/testthat/openai/api.openai.com/v1/chat/completions-8333f0-POST.R |only tidyllm-0.4.0/tidyllm/tests/testthat/perplexity/api.perplexity.ai/chat/completions-11588b-POST.R |only tidyllm-0.5.0/tidyllm/DESCRIPTION | 19 tidyllm-0.5.0/tidyllm/MD5 | 145 tidyllm-0.5.0/tidyllm/NAMESPACE | 14 tidyllm-0.5.0/tidyllm/NEWS.md | 193 + tidyllm-0.5.0/tidyllm/R/APIProvider.R | 29 tidyllm-0.5.0/tidyllm/R/LLMMessage.R | 73 tidyllm-0.5.0/tidyllm/R/api_azure_openai.R | 8 tidyllm-0.5.0/tidyllm/R/api_chat_completions.R |only tidyllm-0.5.0/tidyllm/R/api_claude.R | 156 tidyllm-0.5.0/tidyllm/R/api_deepseek.R | 13 tidyllm-0.5.0/tidyllm/R/api_ellmer.R | 6 tidyllm-0.5.0/tidyllm/R/api_gemini.R | 220 - tidyllm-0.5.0/tidyllm/R/api_groq.R | 10 tidyllm-0.5.0/tidyllm/R/api_llamacpp.R | 2 tidyllm-0.5.0/tidyllm/R/api_mistral.R | 54 tidyllm-0.5.0/tidyllm/R/api_ollama.R | 4 tidyllm-0.5.0/tidyllm/R/api_openai.R | 1887 +++------- tidyllm-0.5.0/tidyllm/R/api_openrouter.R | 80 tidyllm-0.5.0/tidyllm/R/api_perplexity.R | 2 tidyllm-0.5.0/tidyllm/R/api_voyage.R | 4 tidyllm-0.5.0/tidyllm/R/llm_message.R | 149 tidyllm-0.5.0/tidyllm/R/llm_verbs.R | 164 tidyllm-0.5.0/tidyllm/R/media.R | 255 + tidyllm-0.5.0/tidyllm/R/rate_limits.R | 3 tidyllm-0.5.0/tidyllm/README.md | 91 tidyllm-0.5.0/tidyllm/build/vignette.rds |binary tidyllm-0.5.0/tidyllm/inst/doc/tidyllm.R | 44 tidyllm-0.5.0/tidyllm/inst/doc/tidyllm.Rmd | 76 tidyllm-0.5.0/tidyllm/inst/doc/tidyllm.html | 143 tidyllm-0.5.0/tidyllm/man/audio_file.Rd |only tidyllm-0.5.0/tidyllm/man/cancel_openai_batch.Rd | 2 tidyllm-0.5.0/tidyllm/man/chat_completions_chat.Rd |only tidyllm-0.5.0/tidyllm/man/chatgpt.Rd | 11 tidyllm-0.5.0/tidyllm/man/check_job.Rd | 2 tidyllm-0.5.0/tidyllm/man/check_openai_batch.Rd | 2 tidyllm-0.5.0/tidyllm/man/deepseek_chat.Rd | 6 tidyllm-0.5.0/tidyllm/man/delete_file.Rd |only tidyllm-0.5.0/tidyllm/man/fetch_job.Rd | 2 tidyllm-0.5.0/tidyllm/man/fetch_openai_batch.Rd | 2 tidyllm-0.5.0/tidyllm/man/file_info.Rd |only tidyllm-0.5.0/tidyllm/man/groq_chat.Rd | 2 tidyllm-0.5.0/tidyllm/man/img.Rd | 11 tidyllm-0.5.0/tidyllm/man/list_files.Rd |only tidyllm-0.5.0/tidyllm/man/list_openai_batches.Rd | 2 tidyllm-0.5.0/tidyllm/man/llm_message.Rd | 10 tidyllm-0.5.0/tidyllm/man/mistral_chat.Rd | 3 tidyllm-0.5.0/tidyllm/man/openai.Rd | 13 tidyllm-0.5.0/tidyllm/man/openai_chat.Rd | 80 tidyllm-0.5.0/tidyllm/man/openai_check_research.Rd |only tidyllm-0.5.0/tidyllm/man/openai_code_interpreter.Rd |only tidyllm-0.5.0/tidyllm/man/openai_deep_research.Rd |only tidyllm-0.5.0/tidyllm/man/openai_embedding.Rd | 2 tidyllm-0.5.0/tidyllm/man/openai_fetch_research.Rd |only tidyllm-0.5.0/tidyllm/man/openai_list_models.Rd | 2 tidyllm-0.5.0/tidyllm/man/openai_websearch.Rd |only tidyllm-0.5.0/tidyllm/man/openrouter_chat.Rd | 12 tidyllm-0.5.0/tidyllm/man/pdf_file.Rd |only tidyllm-0.5.0/tidyllm/man/send_openai_batch.Rd | 2 tidyllm-0.5.0/tidyllm/man/tidyllm-package.Rd | 2 tidyllm-0.5.0/tidyllm/man/upload_file.Rd |only tidyllm-0.5.0/tidyllm/man/video_file.Rd |only tidyllm-0.5.0/tidyllm/man/voyage_embedding.Rd | 2 tidyllm-0.5.0/tidyllm/tests/testthat/claude/api.anthropic.com/v1/messages-f84379-POST.R |only tidyllm-0.5.0/tidyllm/tests/testthat/deepseek/api.deepseek.com/chat/completions-019017-POST.R |only tidyllm-0.5.0/tidyllm/tests/testthat/groq/api.groq.com/openai/v1/chat/completions-2a2aa4-POST.R |only tidyllm-0.5.0/tidyllm/tests/testthat/groq/api.groq.com/openai/v1/chat/completions-bf210d-POST.R |only tidyllm-0.5.0/tidyllm/tests/testthat/mistral/api.mistral.ai/v1/chat/completions-c2ce32-POST.R |only tidyllm-0.5.0/tidyllm/tests/testthat/ollama/localhost-11434/api/chat-a2ac00-POST.R |only tidyllm-0.5.0/tidyllm/tests/testthat/openai/api.openai.com/v1/chat/completions-f382f0-POST.R |only tidyllm-0.5.0/tidyllm/tests/testthat/openai_schema_multiple/api.openai.com/v1/responses-94040c-POST.R |only tidyllm-0.5.0/tidyllm/tests/testthat/openai_schema_single/api.openai.com/v1/responses-d98d41-POST.R |only tidyllm-0.5.0/tidyllm/tests/testthat/perplexity/api.perplexity.ai/chat/completions-cca835-POST.R |only tidyllm-0.5.0/tidyllm/tests/testthat/test_api_claude.R | 2 tidyllm-0.5.0/tidyllm/tests/testthat/test_api_deepseek.R | 2 tidyllm-0.5.0/tidyllm/tests/testthat/test_api_gemini.R | 2 tidyllm-0.5.0/tidyllm/tests/testthat/test_api_groq.R | 2 tidyllm-0.5.0/tidyllm/tests/testthat/test_api_mistral.R | 2 tidyllm-0.5.0/tidyllm/tests/testthat/test_api_ollama.R | 10 tidyllm-0.5.0/tidyllm/tests/testthat/test_api_openai.R | 24 tidyllm-0.5.0/tidyllm/tests/testthat/test_api_perplexity.R | 2 tidyllm-0.5.0/tidyllm/tests/testthat/test_llm_message.R | 63 tidyllm-0.5.0/tidyllm/vignettes/tidyllm.Rmd | 76 89 files changed, 2453 insertions(+), 1746 deletions(-)
Title: Recency, Frequency and Monetary Value Analysis
Description: Tools for RFM (recency, frequency and monetary value) analysis.
Generate RFM score from both transaction and customer level data. Visualize the
relationship between recency, frequency and monetary value using heatmap,
histograms, bar charts and scatter plots. Includes a 'shiny' app for
interactive segmentation. References:
i. Blattberg R.C., Kim BD., Neslin S.A (2008) <doi:10.1007/978-0-387-72579-6_12>.
Author: Aravind Hebbali [aut, cre]
Maintainer: Aravind Hebbali <hebbali.aravind@gmail.com>
Diff between rfm versions 0.3.0 dated 2024-02-26 and 0.4.0 dated 2026-04-30
DESCRIPTION | 19 MD5 | 34 NEWS.md | 14 R/rfm-plots.R | 89 R/rfm-segment.R | 307 - R/rfm-table-customer.R | 15 R/rfm-table-transaction.R | 3 README.md | 20 build/vignette.rds |binary inst/doc/rfm-introduction.R | 6 inst/doc/rfm-introduction.html | 43 man/rfm.Rd | 1 tests/testthat/_snaps/rfm-plots/rfm-barchart.svg | 1800 +++++----- tests/testthat/_snaps/rfm-plots/rfm-heatmap.svg | 64 tests/testthat/_snaps/rfm-plots/rfm-histograms.svg | 48 tests/testthat/_snaps/rfm-plots/rfm-plot-revenue-dist-flipped.svg | 14 tests/testthat/_snaps/rfm-plots/rfm-plot-revenue-dist.svg | 16 tests/testthat/_snaps/rfm-plots/rfm-plot-segment-scatter.svg | 50 18 files changed, 1125 insertions(+), 1418 deletions(-)
Title: Multi-Objective Spatial Planning
Description: Provides a modular framework for exact multi-objective spatial
planning using mixed-integer programming. The package supports the
definition of planning problems through planning units, features,
management actions, action effects, spatial relations, targets,
constraints, and objective functions. It enables the optimisation of
spatial planning portfolios under considerations such as boundary
structure, connectivity, and fragmentation. Supported multi-objective
methods include weighted-sum aggregation, epsilon-constraint, and the
augmented epsilon-constraint method. Problems can be solved with several
commercial and open-source optimisation solvers. Optional solver backends
include the 'gurobi' R package, which is distributed with the Gurobi Optimizer
installation <https://docs.gurobi.com/projects/optimizer/en/13.0/reference/r/setup.html>,
and the 'rcbc' R package, available from GitHub at
<https://github.com/dirkschumacher/rcbc>. For background on multi-objective
optimisati [...truncated...]
Author: Jose Salgado-Rojas [aut, cre] ,
Matias Moreno-Faguett [aut] ,
Nuria Aquilue [aut]
Maintainer: Jose Salgado-Rojas <jose.salgroj@gmail.com>
Diff between multiscape versions 1.0.6 dated 2026-04-28 and 1.0.7 dated 2026-04-30
DESCRIPTION | 6 MD5 | 16 +- NEWS.md | 4 R/build_model.R | 102 ++++++++++++++++ R/internal.R | 86 ++++++++++++++ R/internalMO.R | 182 +++++++++++++++++++++++++++--- README.md | 12 + man/figures/README-unnamed-chunk-10-1.png |binary src/init.c | 2 9 files changed, 381 insertions(+), 29 deletions(-)
Title: Make Symmetric and Asymmetric ARDL Estimations
Description: Implements estimation procedures for Autoregressive Distributed Lag (ARDL)
and Nonlinear ARDL (NARDL) models, which allow researchers to investigate both
short- and long-run relationships in time series data under mixed orders of integration.
The package supports simultaneous modeling of symmetric and asymmetric regressors,
flexible treatment of short-run and long-run asymmetries, and automated equation handling.
It includes several cointegration testing approaches such as the Pesaran-Shin-Smith F
and t bounds tests, and narayan test.
Methodological foundations are provided in Pesaran, Shin, and Smith (2001)
<doi:10.1016/S0304-4076(01)00049-5> and Shin, Yu, and Greenwood-Nimmo (2014, ISBN:9780123855079).
Author: Huseyin Karamelikli [aut, cre] ,
Huseyin Utku Demir [aut]
Maintainer: Huseyin Karamelikli <hakperest@gmail.com>
Diff between kardl versions 1.3.0 dated 2026-04-18 and 1.3.1 dated 2026-04-30
kardl-1.3.0/kardl/R/settings.R |only kardl-1.3.1/kardl/DESCRIPTION | 9 kardl-1.3.1/kardl/MD5 | 76 +- kardl-1.3.1/kardl/NEWS.md | 14 kardl-1.3.1/kardl/R/kardl.R | 531 ++++++++---------- kardl-1.3.1/kardl/R/longrun.R | 20 kardl-1.3.1/kardl/R/miscellaneous.R | 128 ++-- kardl-1.3.1/kardl/R/multipliers.R | 61 +- kardl-1.3.1/kardl/R/prepare.R | 273 ++++++++- kardl-1.3.1/kardl/R/print.R | 87 ++ kardl-1.3.1/kardl/R/srr-stats-standards.R |only kardl-1.3.1/kardl/R/tests.R | 257 +++++--- kardl-1.3.1/kardl/R/zzz.R |only kardl-1.3.1/kardl/README.md | 468 ++++++--------- kardl-1.3.1/kardl/inst/doc/intro.R | 29 kardl-1.3.1/kardl/inst/doc/intro.Rmd | 58 + kardl-1.3.1/kardl/inst/doc/intro.html | 113 ++- kardl-1.3.1/kardl/inst/examples/getData.R | 42 - kardl-1.3.1/kardl/man/bootstrap.Rd | 25 kardl-1.3.1/kardl/man/ecm.Rd | 357 +++++------- kardl-1.3.1/kardl/man/imf_example_data.Rd | 8 kardl-1.3.1/kardl/man/kardl.Rd | 275 ++++----- kardl-1.3.1/kardl/man/kardl_get.Rd | 8 kardl-1.3.1/kardl/man/kardl_longrun.Rd | 36 - kardl-1.3.1/kardl/man/kardl_reset.Rd | 43 - kardl-1.3.1/kardl/man/kardl_set.Rd | 39 - kardl-1.3.1/kardl/man/lmerge.Rd | 28 kardl-1.3.1/kardl/man/modelCriterion.Rd | 28 kardl-1.3.1/kardl/man/mplier.Rd | 29 kardl-1.3.1/kardl/man/narayan.Rd | 56 + kardl-1.3.1/kardl/man/parse_formula_vars.Rd | 2 kardl-1.3.1/kardl/man/pssf.Rd | 53 - kardl-1.3.1/kardl/man/psst.Rd | 50 - kardl-1.3.1/kardl/man/symmetrytest.Rd | 8 kardl-1.3.1/kardl/tests/testthat/Rplots.pdf |only kardl-1.3.1/kardl/tests/testthat/test-kardl.R | 159 +++++ kardl-1.3.1/kardl/tests/testthat/test-multipliers.R |only kardl-1.3.1/kardl/tests/testthat/test-print-summary.R |only kardl-1.3.1/kardl/tests/testthat/test-settings.R | 19 kardl-1.3.1/kardl/tests/testthat/test-tests.R | 292 +++++++++ kardl-1.3.1/kardl/tests/testthat/test-utils.R | 126 ++++ kardl-1.3.1/kardl/vignettes/intro.Rmd | 58 + 42 files changed, 2459 insertions(+), 1406 deletions(-)
Title: Fixed Effects Counterfactual Estimators
Description: Provides tools for estimating causal effects in panel data using counterfactual methods, as well as other modern DID estimators. It is designed for causal panel analysis with binary treatments under the parallel trends assumption. The package supports scenarios where treatments can switch on and off and allows for limited carryover effects. It includes several imputation estimators, such as Gsynth (Xu 2017), linear factor models, and the matrix completion method. Detailed methodology is described in Liu, Wang, and Xu (2024) <doi:10.48550/arXiv.2107.00856> and Chiu et al. (2025) <doi:10.48550/arXiv.2309.15983>. Optionally integrates with the "HonestDiDFEct" package for sensitivity analyses compatible with imputation estimators. "HonestDiDFEct" is not on CRAN but can be obtained from <https://github.com/lzy318/HonestDiDFEct>.
Author: Licheng Liu [aut],
Ziyi Liu [aut],
Ye Wang [aut],
Yiqing Xu [aut, cre],
Tianzhu Qin [aut],
Shiyun Hu [aut],
Rivka Lipkovitz [aut]
Maintainer: Yiqing Xu <yiqingxu@stanford.edu>
Diff between fect versions 2.2.0 dated 2026-03-27 and 2.4.1 dated 2026-04-30
DESCRIPTION | 10 MD5 | 116 +- NAMESPACE | 5 R/boot.R | 619 +++++-------- R/cfe.R | 7 R/cumu.R | 8 R/cv-helpers.R |only R/cv-rolling.R |only R/cv-rule-helpers.R |only R/cv.R | 748 +++++++++++++--- R/cv_binary.R | 78 + R/default.R | 276 +++++- R/diagtest.R | 14 R/did_wrapper.R | 2 R/effect.R | 6 R/esplot.R | 157 ++- R/fe.R | 7 R/fect_iden.R | 12 R/fect_mspe.R | 36 R/fect_nevertreated.R | 1231 ++++++++++++++++----------- R/fect_sens.R | 4 R/fittest.R | 2 R/impute_Y0.R |only R/loading_bound.R |only R/mc.R | 7 R/permutation.R | 2 R/plot.R | 453 +++++++-- R/po-estimands.R |only R/polynomial.R | 7 R/print.R | 10 R/support.R | 57 + R/theme-helpers.R |only R/valid_controls.R |only data/simdata.rda |binary man/esplot.Rd | 8 man/estimand.Rd |only man/fect.Rd | 74 + man/fect_iden.Rd | 41 man/fect_mspe.Rd | 12 man/imputed_outcomes.Rd |only man/plot.fect.Rd | 13 man/r.cv.rolling.Rd |only man/simdata.Rd | 71 + src/Makevars | 2 tests/testthat.R | 15 tests/testthat/fixtures |only tests/testthat/make-paraboot-baseline.R |only tests/testthat/test-carryover-rm-slot.R |only tests/testthat/test-cov-ar-parametric-boot.R |only tests/testthat/test-cv-parallel.R |only tests/testthat/test-estimand-aptt.R |only tests/testthat/test-estimand-att-cumu.R |only tests/testthat/test-estimand-att.R |only tests/testthat/test-estimand-deprecation.R |only tests/testthat/test-estimand-log-att.R |only tests/testthat/test-estimand-parametric.R |only tests/testthat/test-factors-from-refactor.R | 87 - tests/testthat/test-fect-basic.R | 6 tests/testthat/test-gsynth-r0-boot.R |only tests/testthat/test-imputed-outcomes.R |only tests/testthat/test-loading-bound-solver.R |only tests/testthat/test-loading-bound.R |only tests/testthat/test-modern-theme.R |only tests/testthat/test-paraboot-dispatcher.R |only tests/testthat/test-paraboot-parity.R |only tests/testthat/test-parallel-vector-form.R |only tests/testthat/test-parametric-notyet-gate.R |only tests/testthat/test-phase-a-future-state.R |only tests/testthat/test-rolling-cv-methods.R |only tests/testthat/test-rolling-via-dispatcher.R |only tests/testthat/test-rolling-window-cv.R |only tests/testthat/test-weights-consistency.R |only tests/testthat/test-yctfull-gsc.R |only 73 files changed, 2909 insertions(+), 1294 deletions(-)
Title: Evaluates Present Values and Health Economic Models with Dynamic
Pricing and Uptake
Description: The goal of 'dynamicpv' is to provide a simple way to calculate (net) present values and outputs from health economic models (especially cost-effectiveness and budget impact) in discrete time that reflect dynamic pricing and dynamic uptake. Dynamic pricing is also known as life cycle pricing; dynamic uptake is also known as multiple or stacked cohorts, or dynamic disease prevalence. Shafrin (2024) <doi:10.1515/fhep-2024-0014> provides an explanation of dynamic value elements, in the context of Generalized Cost Effectiveness Analysis, and Puls (2024) <doi:10.1016/j.jval.2024.03.006> reviews challenges of incorporating such dynamic value elements. This package aims to reduce those challenges.
Author: Dominic Muston [aut, cre] ,
John Blischak [ctb] ,
Merck & Co., Inc., Rahway, NJ, USA and its affiliates [cph, fnd]
Maintainer: Dominic Muston <dom.muston@gmail.com>
Diff between dynamicpv versions 0.4.1 dated 2026-01-15 and 0.4.2 dated 2026-04-30
DESCRIPTION | 16 - MD5 | 18 - NEWS.md | 4 inst/doc/budget-impact-applications.R | 147 ++++++++-- inst/doc/budget-impact-applications.Rmd | 228 ++++++++++++---- inst/doc/budget-impact-applications.html | 429 +++++++++++++++++++++---------- inst/doc/math-framework.html | 8 man/dynamicpv-package.Rd | 2 vignettes/bibliography.bib | 3 vignettes/budget-impact-applications.Rmd | 228 ++++++++++++---- 10 files changed, 790 insertions(+), 293 deletions(-)
Title: Camera Trap Data Management and Analysis Framework
Description: Management and analysis of camera trap wildlife data through
an integrated workflow. Provides functions for image/video
organization and metadata extraction, species/individual
identification. Creates detection histories for occupancy and spatial
capture-recapture analyses, with support for multi-season studies.
Includes tools for fitting community occupancy models in JAGS and
NIMBLE, and an interactive dashboard for survey data visualization and
analysis. Features visualization of species distributions and activity
patterns, plus export capabilities for GIS and reports. Emphasizes
automation and reproducibility while maintaining flexibility for
different study designs.
Author: Juergen Niedballa [aut, cre] ,
Alexandre Courtiol [aut] ,
Rahel Sollmann [aut] ,
John Mathai [ctb],
Seth Timothy Wong [ctb] ,
An The Truong Nguyen [ctb] ,
Azlan bin Mohamed [ctb] ,
Andrew Tilker [ctb] ,
Roshan Guharajan [ctb] ,
Ioannis Alexiou [ctb] [...truncated...]
Maintainer: Juergen Niedballa <camtrapr@gmail.com>
This is a re-admission after prior archival of version 3.0.3 dated 2026-02-08
Diff between camtrapR versions 3.0.3 dated 2026-02-08 and 3.0.4 dated 2026-04-30
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Title: Case-Cotrol Analysis of Multi-Allelic Loci
Description: Data sets and functions for chi-squared Hardy-Weinberg and case-control association tests of highly polymorphic genetic data [e.g., human leukocyte antigen (HLA) data]. Performs association tests at multiple levels of polymorphism (haplotype, locus and HLA amino-acids) as described in Pappas DJ, Marin W, Hollenbach JA, Mack SJ (2016) <doi:10.1016/j.humimm.2015.12.006>. Combines rare variants to a common class to account for sparse cells in tables as described by Hollenbach JA, Mack SJ, Thomson G, Gourraud PA (2012) <doi:10.1007/978-1-61779-842-9_14>.
Author: Derek Pappas [aut],
Livia Tran [aut],
Steve Mack [aut, cre],
Jill Hollenbach [aut]
Maintainer: Steve Mack <Steven.Mack@ucsf.edu>
This is a re-admission after prior archival of version 3.0.3 dated 2021-11-17
Diff between BIGDAWG versions 3.0.3 dated 2021-11-17 and 3.1.0 dated 2026-04-30
DESCRIPTION | 28 - MD5 | 78 +- NAMESPACE | 10 NEWS | 584 +++++++++++----------- R/A.R | 424 ++++++++-------- R/A_ExonPtnAlign_functions.R | 576 ++++++++++------------ R/A_support_functions.R | 518 +++++++++---------- R/A_wrapper.R | 223 ++++---- R/BIGDAWG.R | 1103 +++++++++++++++++++++--------------------- R/DRB_Parser.R | 362 ++++++------- R/ErrLog.R | 132 ++--- R/GL2TAB.R | 296 +++++------ R/GLSconvert.R | 124 ++-- R/HWE.R | 48 - R/HWE_support_functions.R | 418 ++++++++-------- R/HWE_wrapper.R | 62 +- R/H_MC.R | 286 +++++----- R/H_support_functions.R | 118 ++-- R/H_wrapper_MC.R | 320 ++++++------ R/L.R | 324 ++++++------ R/L_wrapper.R | 128 ++-- R/TAB2GL.R | 292 +++++------ R/check_functions.R | 948 ++++++++++++++++++------------------ R/data.R | 26 R/general_functions.R | 750 ++++++++++++++-------------- R/stat_functions.R | 1054 ++++++++++++++++++++-------------------- R/sysdata.rda |binary R/update_wrapper.R | 231 ++++---- build/vignette.rds |binary inst/doc/BIGDAWG.Rmd | 596 +++++++++++----------- inst/doc/BIGDAWG.html | 1120 ++++++++++++++++++++++++++++++------------- inst/doc/GLSconvert.Rmd | 275 +++++----- inst/doc/GLSconvert.html | 702 +++++++++++++++++++------- man/BIGDAWG.Rd | 8 man/L.Rd | 2 man/cci.Rd | 6 man/cci.pval.list.Rd | 4 man/prepData.Rd | 6 vignettes/BIGDAWG.Rmd | 596 +++++++++++----------- vignettes/GLSconvert.Rmd | 275 +++++----- 40 files changed, 6955 insertions(+), 6098 deletions(-)
Title: Alternative Meta-Analysis Methods
Description: Provides alternative statistical methods for meta-analysis, including:
- bivariate generalized linear mixed models for synthesizing odds ratios, relative risks,
and risk differences
(Chu et al., 2012 <doi:10.1177/0962280210393712>)
- tests and measures for between-study heterogeneity
(Lin et al., 2017 <doi:10.1111/biom.12543>;
Wang et al., 2022 <doi:10.1002/sim.9261>;
Yu et al., 2025 <doi:10.1186/s12874-025-02719-7>);
- measures, tests, and visualization tools for publication bias or small-study effects
(Lin and Chu, 2018 <doi:10.1111/biom.12817>;
Lin, 2019 <doi:10.1002/jrsm.1340>;
Lin, 2020 <doi:10.1177/0962280220910172>;
Shi et al., 2020 <doi:10.1002/jrsm.1415>);
- meta-analysis of combining standardized mean differences and odds ratios
(Jing et al., 2023 <doi:10.1080/10543406.2022.2105345>);
- meta-analysis of diagnostic tests for synthesizing sensitivities, specificities, etc.
(Reitsma et al., 2005 <doi:10.1016/j.jclinepi.200 [...truncated...]
Author: Lifeng Lin [aut, cre] ,
Yaqi Jing [ctb],
Kristine J. Rosenberger [ctb],
Linyu Shi [ctb],
Yipeng Wang [ctb],
Xing Xing [ctb] ,
Zhiyuan Yu [ctb],
Haitao Chu [aut]
Maintainer: Lifeng Lin <lifenglin@arizona.edu>
Diff between altmeta versions 4.3 dated 2025-10-13 and 4.3.1 dated 2026-04-30
DESCRIPTION | 11 ++++++----- MD5 | 10 +++++----- NAMESPACE | 1 + build/partial.rdb |binary man/metahet.Rd | 4 +++- man/metahet.hybrid.Rd | 5 +++++ 6 files changed, 20 insertions(+), 11 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-03-12 0.6-1
2016-11-18 0.5-1
2016-07-09 0.4-1
2014-05-04 0.2-3
2014-03-03 0.2-2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-09-27 0.1.1
2017-09-19 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-07-11 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-07-08 0.1.1
2017-05-21 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-04-04 0.3.0
2016-11-17 0.2.3
2016-04-08 0.1.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-10-04 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-07-31 0.1.2.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-04-09 2.1.1
2017-01-13 2.0.1
2016-08-29 1.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-10-11 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-06-15 0.4.4
2017-06-12 0.3.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-07-25 1.1
2017-06-27 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-05-03 0.9.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-06-26 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-08-08 2.0
2016-12-21 1.1
2015-04-18 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-09-07 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-07-01 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-06-16 0.5.1
2017-05-01 0.5
2016-05-10 0.4
2015-07-24 0.3
2015-05-12 0.2
2015-03-19 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-05-12 0.3.3
2017-02-07 0.3.1
2017-02-03 0.3
2016-10-05 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-05-14 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-09-29 0.6
2015-08-20 0.4
2015-02-20 0.1
Title: Bayesian Penalized Quantile Regression
Description: Bayesian regularized quantile regression utilizing two major classes of shrinkage priors
(the spike-and-slab priors and the horseshoe family of priors) leads to efficient Bayesian
shrinkage estimation, variable selection and valid statistical inference. In this package,
we have implemented robust Bayesian variable selection with spike-and-slab priors under
high-dimensional linear regression models (Fan et al. (2024) <doi:10.3390/e26090794> and
Ren et al. (2023) <doi:10.1111/biom.13670>), and regularized quantile varying
coefficient models (Zhou et al.(2023) <doi:10.1016/j.csda.2023.107808>). In particular,
valid robust Bayesian inferences under both models in the presence of heavy-tailed errors
can be validated on finite samples. Additional models with spike-and-slab priors include
robust Bayesian group LASSO and robust binary Bayesian LASSO (Fan and Wu (2025)
<doi:10.1002/sta4.70078>). Besides, robust sparse Bayesian regression with the horseshoe
family of (hor [...truncated...]
Author: Kun Fan [aut],
Cen Wu [aut, cre],
Jie Ren [aut],
Xiaoxi Li [aut],
Fei Zhou [aut]
Maintainer: Cen Wu <wucen@ksu.edu>
Diff between pqrBayes versions 1.2.1 dated 2026-03-14 and 1.2.2 dated 2026-04-30
DESCRIPTION | 8 MD5 | 100 +++++------ NAMESPACE | 24 +- NEWS.md | 4 R/NonRobust.R | 150 ++++++++--------- R/NonRobust_vc.R | 157 ++++++++---------- R/RcppExports.R | 16 - R/Robust_vc.R | 171 +++++++++---------- R/coverage.R | 95 ++++++----- R/coverage_lin.R | 22 +- R/coverage_vc.R | 88 +++++----- R/data.R | 148 ++++++++--------- R/estimation.R | 101 ++++++----- R/estimation_lin.R | 24 +- R/estimation_vc.R | 126 +++++++------- R/nonrobust_bin.R | 81 ++++----- R/nonrobust_g.R | 87 ++++------ R/nonrobust_lin.R | 122 +++++++------- R/pqrBayes-package.R | 136 +++++++-------- R/pqrBayes.R | 388 +++++++++++++++++++++++---------------------- R/pqrBayes_bin.R | 75 +++----- R/pqrBayes_g.R | 49 ++--- R/pqrBayes_lin.R | 74 +++----- R/pqrBayes_vc.R | 56 ++---- R/predict.pqrBayes.R | 129 ++++++++------ R/predict_bin.R | 106 ++++++------ R/predict_lin.R | 68 +++---- R/predict_lin_nonrobust.R | 112 ++++++------ R/predict_lin_robust.R | 114 ++++++------- R/predict_vc.R | 68 +++---- R/predict_vc_nonrobust.R | 148 ++++++++--------- R/predict_vc_robust.R | 148 ++++++++--------- R/print.pqrBayes.R | 106 ++++++------ R/robust_bin.R | 89 ++++------ R/robust_g.R | 98 +++++------ R/robust_lin.R | 130 +++++++-------- R/select.pqrBayes.R | 162 +++++++++--------- R/select_lin.R | 76 ++++---- R/select_vc.R | 88 +++++----- README.md | 24 +- man/coverage.Rd | 6 man/estimation.pqrBayes.Rd | 6 man/pqrBayes.Rd | 62 ++----- man/predict_pqrBayes.Rd | 8 man/select.pqrBayes.Rd | 20 -- src/BBL.cpp | 22 -- src/BBLSS.cpp | 25 +- src/BRBL.cpp | 26 +-- src/BRBLSS.cpp | 25 +- src/BVCUtilities.cpp | 34 +-- src/RcppExports.cpp | 36 +--- 51 files changed, 2088 insertions(+), 2150 deletions(-)
Title: Spatial Null Models and Transforms for Brain Map Comparison
Description: Implements spatial null models and coordinate-space
transformations for statistical comparison of brain maps, following the
framework described in Markello et al. (2022)
<doi:10.1038/s41592-022-01625-w>. Provides variogram-matching
surrogates (Burt et al. 2020), Moran spectral randomization (Wagner &
Dray 2015), and spin-based permutation tests (Alexander-Bloch et al.
2018). Includes an R interface to the 'neuromaps' annotation registry
for browsing, downloading, and comparing brain map annotations from the
Open Science Framework ('OSF').
Integrates with 'ciftiTools' for coordinate-space transforms.
Author: Athanasia Mo Mowinckel [aut, cre, cph]
Maintainer: Athanasia Mo Mowinckel <a.m.mowinckel@psykologi.uio.no>
Diff between neuromapr versions 0.2.1 dated 2026-02-27 and 0.2.2 dated 2026-04-30
DESCRIPTION | 6 +++--- MD5 | 20 ++++++++++---------- NEWS.md | 12 ++++++++++++ README.md | 11 +++++------ inst/doc/neuromapr.html | 13 ++++++------- inst/doc/null-models.html | 4 ++-- inst/doc/rotation-methods.html | 2 +- inst/doc/surface-geometry.html | 6 +++--- tests/testthat/test-nulls-moran.R | 2 +- tests/testthat/test-nulls-spin.R | 6 +++--- tests/testthat/test-nulls-variogram.R | 2 +- 11 files changed, 47 insertions(+), 37 deletions(-)
Title: Methods and Reproducible Workflows for Partial Least Squares
with Missing Data
Description: Methods-first tooling for reproducing and extending the
partial least squares regression studies on incomplete data described in
Nengsih et al. (2019) <doi:10.1515/sagmb-2018-0059>. The package
provides simulation helpers, missingness generators, imputation wrappers,
component-selection utilities, real-data diagnostics, and reproducible
study orchestration for Nonlinear Iterative Partial Least Squares (NIPALS)-Partial
Least Squares (PLS) workflows.
Author: Titin Agustin Nengsih [aut],
Frederic Bertrand [aut, cre],
Myriam Maumy-Bertrand [aut]
Maintainer: Frederic Bertrand <frederic.bertrand@lecnam.net>
Diff between missPLS versions 0.2.0 dated 2026-04-13 and 0.2.1 dated 2026-04-30
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 15 +++++++++++++++ inst/doc/missPLS.html | 12 ++++++------ tests/testthat/test-selection.R | 10 ++++++++-- 5 files changed, 36 insertions(+), 15 deletions(-)
Title: Greedy Experimental Design Construction
Description: Computes experimental designs for two-arm experiments with
covariates using multiple methods, including: (0) complete randomization
and randomization with forced-balance; (1) greedy optimization of a balance
objective function via pairwise switching; (2) numerical optimization via
'gurobi'; (3) rerandomization; (4) Karp's method for one covariate; (5)
exhaustive enumeration for small sample sizes; (6) binary pair matching
using 'nbpMatching'; (7) binary pair matching plus method (1) to further
optimize balance; (8) binary pair matching plus method (3) to further
optimize balance; (9) Hadamard designs; and (10) simultaneous multiple
kernels. For the greedy, rerandomization, and related methods, three
objective functions are supported: Mahalanobis distance, standardized sums
of absolute differences, and kernel distances via the 'kernlab' library.
This package is the result of a stream of research that can be found in
Krieger, A. M., Azriel, D. A., and Kapelner, A. (2019). "Nearly Random
[...truncated...]
Author: Adam Kapelner [aut, cre] ,
David Azriel [aut],
Abba Krieger [aut]
Maintainer: Adam Kapelner <kapelner@qc.cuny.edu>
Diff between GreedyExperimentalDesign versions 1.6 dated 2026-01-09 and 1.6.1 dated 2026-04-30
CHANGELOG | 12 DESCRIPTION | 12 MD5 | 76 +- NAMESPACE | 9 R/GreedyExperimentalDesign.R | 1 R/RcppExports.R | 36 + R/binary_match_search.R | 7 R/gpu_backend.R |only R/greedy_multiple_kernel_search.R | 482 ++++++-------- R/greedy_search.R | 4 R/karp_search.R | 4 R/optimal_search.R | 4 R/rerandomization_search.R | 4 R/shared.R | 31 R/zzz.R | 46 + cleanup |only configure |only configure.win |only inst/java/GreedyExperimentalDesign.jar |binary man/compute_distance_matrix_gpu.Rd |only man/compute_kernel_matrix_gpu.Rd |only man/compute_multiple_kernel_objective_vals_gpu.Rd |only man/compute_objective_vals_gpu.Rd |only man/compute_randomization_metrics_gpu.Rd |only man/full_greedy_search_gpu.Rd |only man/ged_gpu_available.Rd |only man/ged_gpu_devices.Rd |only man/initGreedyMultipleKernelExperimentalDesignObject.Rd | 98 +- man/plot.greedy_multiple_kernel_experimental_design.Rd | 7 man/print.greedy_multiple_kernel_experimental_design.Rd | 4 man/resultsMultipleKernelGreedySearch.Rd | 40 - man/summary.greedy_multiple_kernel_experimental_design.Rd | 2 src/Makevars.in |only src/Makevars.win.in |only src/RcppExports.cpp | 124 +++ src/fast_shuffle.cpp | 4 src/ged_gpu_config.h |only src/ged_native_backend.cpp |only src/ged_native_backend.h |only src/ged_wgpu_backend.cpp |only src/gpu_backend_exports.cpp |only src/kernel_matrix.cpp | 8 src/objective_and_standardize.cpp | 1 src/objective_batch.cpp | 1 tests/testthat.R | 2 tests/testthat/ged-failures.log | 2 tests/testthat/helper-package.R | 2 tests/testthat/test-multiple-kernel-results.R |only tests/testthat/test-suite.R | 3 49 files changed, 641 insertions(+), 385 deletions(-)
More information about GreedyExperimentalDesign at CRAN
Permanent link
Title: Tools to Make Developing R Packages Easier
Description: Collection of package development tools.
Author: Hadley Wickham [aut],
Jim Hester [aut],
Winston Chang [aut],
Jennifer Bryan [aut, cre] ,
Posit Software, PBC [cph, fnd]
Maintainer: Jennifer Bryan <jenny@posit.co>
Diff between devtools versions 2.5.1 dated 2026-04-16 and 2.5.2 dated 2026-04-30
DESCRIPTION | 12 ++++++------ MD5 | 17 ++++++++++------- NEWS.md | 4 ++++ R/install.R | 2 ++ R/session-info.R | 4 +++- build/vignette.rds |binary man/install.Rd | 2 +- tests/testthat/test-install.R | 16 ++++++++++++++++ tests/testthat/testInstallWithDeps |only 9 files changed, 42 insertions(+), 15 deletions(-)
Title: Graph Theory Analysis of Brain MRI Data
Description: A set of tools for performing graph theory analysis of brain MRI
data. It works with data from a Freesurfer analysis (cortical thickness,
volumes, local gyrification index, surface area), diffusion tensor
tractography data (e.g., from FSL) and resting-state fMRI data (e.g., from
DPABI). It contains a graphical user interface for graph visualization and
data exploration, along with several functions for generating useful
figures.
Author: Christopher G. Watson [aut, cre]
Maintainer: Christopher G. Watson <cgwatson@bu.edu>
Diff between brainGraph versions 3.1.1 dated 2025-10-16 and 3.1.2 dated 2026-04-30
DESCRIPTION | 8 +++---- MD5 | 52 ++++++++++++++++++++++++------------------------ NAMESPACE | 2 - NEWS.md | 7 ++++++ R/glm_stats.R | 6 ++--- R/sysdata.rda |binary build/partial.rdb |binary data/aal116.rda |binary data/aal2.120.rda |binary data/aal2.94.rda |binary data/aal90.rda |binary data/brainnetome.rda |binary data/brainsuite.rda |binary data/craddock200.rda |binary data/destrieux.rda |binary data/destrieux.scgm.rda |binary data/dk.rda |binary data/dk.scgm.rda |binary data/dkt.rda |binary data/dkt.scgm.rda |binary data/dosenbach160.rda |binary data/gordon333.rda |binary data/hcp_mmp1.0.rda |binary data/hoa112.rda |binary data/lpba40.rda |binary data/power264.rda |binary man/glm_influence.Rd | 6 ++--- 27 files changed, 44 insertions(+), 37 deletions(-)
Title: Tools for Accessing the Botanical Information and Ecology
Network Database
Description: Provides Tools for Accessing the Botanical Information and Ecology Network Database. The BIEN database contains cleaned and standardized botanical data including occurrence, trait, plot and taxonomic data (See <https://bien.nceas.ucsb.edu/bien/> for more Information). This package provides functions that query the BIEN database by constructing and executing optimized SQL queries.
Author: Brian Maitner [aut, cre]
Maintainer: Brian Maitner <bmaitner@gmail.com>
Diff between BIEN versions 1.2.7 dated 2025-01-31 and 1.2.8 dated 2026-04-30
DESCRIPTION | 10 MD5 | 221 +++++------ NEWS | 22 + R/BIEN.R | 132 +++++- R/BIEN_sql.R | 27 - R/internals.R | 6 README.md | 2 build/vignette.rds |binary inst/doc/BIEN.html | 4 inst/doc/BIEN_tutorial.R | 15 inst/doc/BIEN_tutorial.Rmd | 15 inst/doc/BIEN_tutorial.html | 24 - man/BIEN.Rd | 44 +- man/BIEN_list_all.Rd | 58 +- man/BIEN_list_country.Rd | 96 ++-- man/BIEN_list_county.Rd | 130 +++--- man/BIEN_list_sf.Rd | 86 ++-- man/BIEN_list_state.Rd | 108 ++--- man/BIEN_metadata_citation.Rd | 100 ++--- man/BIEN_metadata_data_dictionaries.Rd | 72 +-- man/BIEN_metadata_database_version.Rd | 62 +-- man/BIEN_metadata_list_political_names.Rd | 68 +-- man/BIEN_metadata_match_data.Rd | 82 ++-- man/BIEN_occurrence_box.Rd | 168 ++++---- man/BIEN_occurrence_country.Rd | 150 +++---- man/BIEN_occurrence_county.Rd | 176 ++++---- man/BIEN_occurrence_family.Rd | 140 +++---- man/BIEN_occurrence_genus.Rd | 136 +++--- man/BIEN_occurrence_records_per_species.Rd | 70 +-- man/BIEN_occurrence_sf.Rd | 159 ++++---- man/BIEN_occurrence_species.Rd | 142 +++---- man/BIEN_occurrence_state.Rd | 160 ++++---- man/BIEN_phylogeny_complete.Rd | 74 +-- man/BIEN_phylogeny_conservative.Rd | 60 +-- man/BIEN_phylogeny_label_nodes.Rd | 124 +++--- man/BIEN_plot_country.Rd | 144 +++---- man/BIEN_plot_dataset.Rd | 136 +++--- man/BIEN_plot_datasource.Rd | 132 +++--- man/BIEN_plot_list_datasource.Rd | 68 +-- man/BIEN_plot_list_sampling_protocols.Rd | 68 +-- man/BIEN_plot_metadata.Rd | 86 ++-- man/BIEN_plot_name.Rd | 136 +++--- man/BIEN_plot_sampling_protocol.Rd | 132 +++--- man/BIEN_plot_sf.Rd | 148 +++---- man/BIEN_plot_state.Rd | 160 ++++---- man/BIEN_ranges_box.Rd | 136 +++--- man/BIEN_ranges_genus.Rd | 182 ++++----- man/BIEN_ranges_intersect_species.Rd | 124 +++--- man/BIEN_ranges_list.Rd | 86 ++-- man/BIEN_ranges_load_species.Rd | 92 ++-- man/BIEN_ranges_sf.Rd | 144 +++---- man/BIEN_ranges_shapefile_to_skinny.Rd | 90 ++-- man/BIEN_ranges_skinny_ranges_to_richness_raster.Rd | 108 ++--- man/BIEN_ranges_species.Rd | 160 ++++---- man/BIEN_ranges_species_bulk.Rd | 106 ++--- man/BIEN_stem_datasource.Rd | 130 +++--- man/BIEN_stem_family.Rd | 132 +++--- man/BIEN_stem_genus.Rd | 132 +++--- man/BIEN_stem_sampling_protocol.Rd | 122 +++--- man/BIEN_stem_species.Rd | 132 +++--- man/BIEN_taxonomy_family.Rd | 62 +-- man/BIEN_taxonomy_genus.Rd | 62 +-- man/BIEN_taxonomy_species.Rd | 62 +-- man/BIEN_trait_country.Rd | 106 ++--- man/BIEN_trait_family.Rd | 102 ++--- man/BIEN_trait_genus.Rd | 102 ++--- man/BIEN_trait_list.Rd | 70 +-- man/BIEN_trait_mean.Rd | 84 ++-- man/BIEN_trait_species.Rd | 102 ++--- man/BIEN_trait_trait.Rd | 108 ++--- man/BIEN_trait_traitbyfamily.Rd | 116 ++--- man/BIEN_trait_traitbygenus.Rd | 116 ++--- man/BIEN_trait_traitbyspecies.Rd | 116 ++--- man/BIEN_trait_traits_per_species.Rd | 74 +-- man/dot-collection_check.Rd | 24 - man/dot-collection_check_plot.Rd | 24 - man/dot-collection_check_stem.Rd | 24 - man/dot-cultivated_check.Rd | 24 - man/dot-cultivated_check_plot.Rd | 24 - man/dot-cultivated_check_stem.Rd | 24 - man/dot-genus_check.Rd | 30 - man/dot-geovalid_check.Rd | 24 - man/dot-is_char.Rd | 32 - man/dot-is_log.Rd | 32 - man/dot-is_log_or_null.Rd | 32 - man/dot-is_num.Rd | 32 - man/dot-md_check_plot.Rd | 24 - man/dot-md_check_stem.Rd | 24 - man/dot-native_check.Rd | 24 - man/dot-native_check_plot.Rd | 24 - man/dot-native_check_stem.Rd | 24 - man/dot-natives_check.Rd | 24 - man/dot-natives_check_plot.Rd | 24 - man/dot-natives_check_stem.Rd | 24 - man/dot-newworld_check.Rd | 24 - man/dot-newworld_check_plot.Rd | 24 - man/dot-newworld_check_stem.Rd | 24 - man/dot-observation_check.Rd | 24 - man/dot-political_check.Rd | 24 - man/dot-political_check_plot.Rd | 24 - man/dot-political_check_stem.Rd | 24 - man/dot-political_check_traits.Rd | 24 - man/dot-source_check_traits.Rd | 24 - man/dot-species_check.Rd | 30 - man/dot-taxonomy_check.Rd | 24 - man/dot-taxonomy_check_plot.Rd | 24 - man/dot-taxonomy_check_stem.Rd | 24 - man/dot-taxonomy_check_traits.Rd | 24 - man/dot-vfoi_check_stem.Rd | 24 - tests/testthat/helper-bien.R |only tests/testthat/test-BIEN.r | 395 +++++++++----------- vignettes/BIEN_tutorial.Rmd | 15 112 files changed, 4365 insertions(+), 4240 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-03-12 0.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-05-18 2.1
2016-11-23 2.0
2016-08-16 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-09-12 1.2
2013-07-25 1.1
2013-07-19 1.0-0
2013-05-01 0.1-0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-11-28 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-08-28 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-11-17 2.0
2016-06-03 1.4
2016-01-16 1.3
2015-11-03 1.2
2015-09-16 1.1
2015-09-15 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-09-21 0.1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-08-11 2.1.1
2017-07-25 2.1.0
2017-02-09 2.0.3
2016-01-15 1.2.0
2014-06-16 1.1.2
2014-04-07 1.1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-11-17 0.3
2016-10-09 0.2
2016-10-07 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-05-06 0.1.4.3
2017-09-07 0.1.4.2
2017-01-09 0.1.4.1
2015-10-13 0.1.3
2015-08-19 0.1.2
2015-06-09 0.1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-04-04 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-11-02 1.8
2017-06-29 1.7
2017-03-08 1.6
2016-07-19 1.5
2016-06-29 1.4
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-11-07 0.0-0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-07-08 1.3
2016-01-15 1.2.2
2014-06-24 1.1
2014-03-07 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-07-04 0.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-04-25 1.0-0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-04-21 1.1.0
2016-12-14 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-07-19 0.1.4
2025-06-17 0.1.3
2025-02-14 0.1.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-10-09 0.1.3
2016-12-03 0.1.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-02-29 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-07-08 1.4
2016-01-19 1.3
2013-09-16 1.2
2012-06-08 1.1
2011-11-19 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-09-02 1.1
2016-08-07 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-08-16 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-10-19 0.1-4
2010-02-11 0.1-3
2009-11-10 0.1-2
2009-11-08 0.1-1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-07-19 0.2.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-08-01 0.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-10-06 0.2.1
2017-06-28 0.2.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-07-12 2.1.0
2017-05-23 2.0.0
2016-09-12 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-12-15 0.2.2
2017-04-12 0.2.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-05-02 1.3
2017-04-03 1.2
2016-04-11 1.1
2016-04-01 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-11-10 2.0.1
2016-11-18 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-07-28 0.1.1
2017-03-02 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-05-01 1.1
2017-05-18 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-04-12 0.5
2016-02-15 0.4.3
2015-10-13 0.4.2
2015-08-14 0.4
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-08-21 1.2
2017-02-11 1.1
2016-12-23 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-04-25 1.5
2016-08-16 1.4
2016-07-30 1.3
2016-05-13 1.2
2016-05-10 1.1
2016-01-20 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-08-20 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-12-17 1.3
2016-05-24 1.2
2014-08-29 1.1
2014-07-22 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-06-27 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-08-29 0.5
Title: Computation of Variance-Based Sensitivity Indices
Description: It allows to rapidly compute, bootstrap and plot up to fourth-order Sobol'-based sensitivity indices using several state-of-the-art first and total-order estimators. Sobol' indices can be computed either for models that yield a scalar as a model output or for systems of differential equations. The package also provides a suit of benchmark tests functions and several options to obtain publication-ready figures of the model output uncertainty and sensitivity-related analysis. An overview of the package can be found in Puy et al. (2022) <doi:10.18637/jss.v102.i05>.
Author: Arnald Puy [aut, cre] ,
Bertrand Ioos [ctb] ,
Gilles Pujol [ctb] ,
RStudio [cph]
Maintainer: Arnald Puy <arnald.puy@pm.me>
Diff between sensobol versions 1.1.8 dated 2026-04-05 and 1.1.9 dated 2026-04-30
DESCRIPTION | 8 - MD5 | 30 +++---- NAMESPACE | 1 NEWS.md | 18 ++++ R/sobol_convergence.R | 5 - R/sobol_indices.R | 71 ++++++++++++----- R/sobol_matrices.R | 141 ++++++++++++++++++++++++++++------- build/partial.rdb |binary inst/doc/sensobol.pdf |binary man/load_packages.Rd | 6 - man/sensobol-package.Rd | 2 man/sobol_convergence.Rd | 20 ++++ man/sobol_indices.Rd | 26 +++++- man/sobol_matrices.Rd | 36 ++++++++ tests/testthat/test-sobol_boot.R | 56 +++++++++++++ tests/testthat/test-sobol_matrices.R | 126 +++++++++++++++++++++++++++++++ 16 files changed, 468 insertions(+), 78 deletions(-)
Title: Latent Interaction (and Moderation) Analysis in Structural
Equation Models (SEM)
Description: Estimation of interaction (i.e., moderation) effects between latent variables
in structural equation models (SEM).
The supported methods are:
The constrained approach (Algina & Moulder, 2001).
The unconstrained approach (Marsh et al., 2004).
The residual centering approach (Little et al., 2006).
The double centering approach (Lin et al., 2010).
The latent moderated structural equations (LMS) approach (Klein & Moosbrugger, 2000).
The quasi-maximum likelihood (QML) approach (Klein & Muthén, 2007)
The constrained- unconstrained, residual- and double centering- approaches
are estimated via 'lavaan' (Rosseel, 2012), whilst the LMS- and QML- approaches
are estimated via 'modsem' it self. Alternatively model can be
estimated via 'Mplus' (Muthén & Muthén, 1998-2017).
References:
Algina, J., & Moulder, B. C. (2001).
<doi:10.1207/S15328007SEM0801_3>.
"A note on estimating the Jöreskog-Yang model for latent variable interaction using 'LISREL' 8.3."
Klein, A., & Moosb [...truncated...]
Author: Kjell Solem Slupphaug [aut, cre] ,
Mehmet Mehmetoglu [ctb] ,
Matthias Mittner [ctb]
Maintainer: Kjell Solem Slupphaug <slupphaugkjell@gmail.com>
Diff between modsem versions 1.0.18 dated 2026-03-28 and 1.0.19 dated 2026-04-30
DESCRIPTION | 8 ++-- MD5 | 12 +++--- R/print_partable.R | 29 +++++++++++---- R/utils.R | 6 +-- inst/doc/customize_plot_interactions.html | 2 - inst/doc/observed_lms_qml.html | 55 ++++++++++++++---------------- inst/doc/plot_interactions.html | 2 - 7 files changed, 63 insertions(+), 51 deletions(-)
Title: Kernel-Based Regularized Least Squares
Description: Implements Kernel-based Regularized Least Squares (KRLS), a
machine learning method to fit multidimensional functions y = f(x) for
regression and classification problems without relying on linearity or
additivity assumptions. KRLS finds the best fitting function by
minimizing the squared loss of a Tikhonov regularization problem,
using Gaussian kernels as radial basis functions. For further details
see Hainmueller and Hazlett (2014, <doi:10.1093/pan/mpt019>).
Author: Jens Hainmueller [aut, cre],
Chad Hazlett [aut]
Maintainer: Jens Hainmueller <jhain@stanford.edu>
Diff between KRLS versions 1.0-0 dated 2017-07-10 and 1.1-0 dated 2026-04-30
DESCRIPTION | 32 +++++++++++++----- MD5 | 25 +++++++++----- NAMESPACE | 19 +++++++---- NEWS.md |only R/krls.R | 95 +++++++++++++++++-------------------------------------- R/lambdasearch.r | 20 +++++------ R/plot.krls.R | 6 +-- R/predict.krls.R | 18 ++++------ R/solveforc.R | 46 +++++++++++++------------- R/summary.krls.R | 6 +-- man/krls.Rd | 5 ++ tests |only 12 files changed, 130 insertions(+), 142 deletions(-)
Title: Core Tools for Packages in the 'fable' Framework
Description: Provides tools, helpers and data structures for
developing models and time series functions for 'fable' and extension
packages. These tools support a consistent and tidy interface for time
series modelling and analysis.
Author: Mitchell O'Hara-Wild [aut, cre] ,
Rob Hyndman [aut],
Earo Wang [aut] ,
Di Cook [ctb],
George Athanasopoulos [ctb],
David Holt [ctb]
Maintainer: Mitchell O'Hara-Wild <mail@mitchelloharawild.com>
Diff between fabletools versions 0.6.1 dated 2026-02-16 and 0.7.0 dated 2026-04-30
DESCRIPTION | 11 +++-- MD5 | 68 ++++++++++++++++++---------------- NAMESPACE | 24 +++++++++++- NEWS.md | 16 ++++++++ R/00_factory.R |only R/broom.R | 48 +++++++++++++++++++----- R/coherent.R |only R/dplyr-mable.R | 11 ++++- R/fitted.R | 16 ++++++-- R/forecast.R | 5 ++ R/generate.R | 4 +- R/lst_mdl.R | 16 +++++--- R/mable.R | 12 ++++-- R/model_combination.R | 6 ++- R/model_null.R | 2 - R/reconciliation.R | 45 +++++++++++++--------- R/refit.R | 4 +- R/stream.R | 4 +- R/zzz.R | 2 - build/stage23.rdb |binary man/augment.Rd | 3 + man/autoplot.dcmp_ts.Rd | 2 - man/autoplot.tbl_ts.Rd | 2 - man/coherent_cmat.Rd |only man/coherent_smat.Rd |only man/common_xregs.Rd | 2 - man/directional_accuracy_measures.Rd | 5 -- man/distribution_accuracy_measures.Rd | 5 -- man/fabletools-package.Rd | 1 man/features.Rd | 2 - man/glance.Rd | 3 + man/interval_accuracy_measures.Rd | 5 -- man/mable.Rd | 2 - man/point_accuracy_measures.Rd | 5 -- man/reexports.Rd | 10 ++--- man/tidy.Rd | 10 ++++- man/unpack_hilo.Rd | 2 - 37 files changed, 227 insertions(+), 126 deletions(-)
Title: Fast and Flexible Implementations of Exploratory Factor Analysis
Tools
Description: Provides functions to perform exploratory factor analysis (EFA) procedures and compare their solutions. The goal is to provide state-of-the-art factor retention methods and a high degree of flexibility in the EFA procedures. This way, for example, implementations from R 'psych' and 'SPSS' can be compared. Moreover, functions for Schmid-Leiman transformation and the computation of omegas are provided. To speed up the analyses, some of the iterative procedures, like principal axis factoring (PAF), are implemented in C++.
Author: Markus Steiner [aut, cre],
Silvia Grieder [aut],
William Revelle [ctb],
Max Auerswald [ctb],
Morten Moshagen [ctb],
John Ruscio [ctb],
Brendan Roche [ctb],
Urbano Lorenzo-Seva [ctb],
David Navarro-Gonzalez [ctb],
Johan Braeken [ctb],
Andreas Soteriad [...truncated...]
Maintainer: Markus Steiner <markus.d.steiner@gmail.com>
Diff between EFAtools versions 0.6.1 dated 2025-07-30 and 0.7.0 dated 2026-04-30
DESCRIPTION | 16 MD5 | 114 - NAMESPACE | 10 NEWS.md | 27 R/EFA.R | 317 +++ R/EFA_AVERAGE.R | 2 R/EFA_POOLED.R |only R/EKC.R | 2 R/MAP.R |only R/ML.R | 1 R/N_FACTORS.R | 29 R/OMEGA_helper.R | 4 R/PAF.R | 1 R/PARALLEL.R | 12 R/PROCRUSTES.R |only R/PROMAX.R | 2 R/ROTATE_OBLQ.R | 2 R/RcppExports.R | 69 R/ULS.R | 3 R/helper.R | 1079 ++++++++++++ R/print.EFA.R | 2261 +++++++++++++++++++++++--- R/print.LOADINGS.R | 651 ++++++- R/print.MAP.R |only R/print.N_FACTORS.R | 34 R/residuals.EFA.R |only README.md | 35 build/vignette.rds |binary inst/doc/EFAtools.html | 1486 ++++++++++------- inst/doc/Replicate_SPSS_psych.html | 139 - man/CONSENSUS_PROCRUSTES.Rd |only man/EFA.Rd | 18 man/EFA_AVERAGE.Rd | 2 man/EFA_POOLED.Rd |only man/EFAtools-package.Rd | 1 man/MAP.Rd |only man/N_FACTORS.Rd | 4 man/PROCRUSTES.Rd |only man/dot-average_matrices.Rd |only man/dot-calc_cis.Rd |only man/dot-change_class.Rd |only man/dot-consensus_loss.Rd |only man/dot-consensus_target_procrustes_single.Rd |only man/dot-extract_list_object.Rd |only man/dot-hyperplane_count.Rd |only man/dot-numformat.Rd | 5 man/dot-oblique_procrustes.Rd |only man/dot-orthogonal_procrustes.Rd |only man/dot-stat_over_list.Rd |only man/dot-tucker_congruence.Rd |only man/figures/README-unnamed-chunk-5-1.png |binary man/print.EFA.Rd | 184 ++ man/print.LOADINGS.Rd | 75 man/print.MAP.Rd |only man/residuals.EFA.Rd |only src/Makevars | 1 src/Makevars.win | 1 src/RcppExports.cpp | 24 src/factor_corres.cpp | 177 +- src/oblique_procrustes.cpp |only tests/testthat/test-EFA.R | 45 tests/testthat/test-EFA_AVERAGE.R | 43 tests/testthat/test-ML.R | 6 tests/testthat/test-N_FACTORS.R | 3 tests/testthat/test-PAF.R | 32 tests/testthat/test-PROCRUSTES.R |only tests/testthat/test-PROMAX.R | 2 tests/testthat/test-ROTATE_OBLQ.R | 12 tests/testthat/test-SL.R | 8 tests/testthat/test-ULS.R | 8 tests/testthat/test-helper.R | 8 70 files changed, 5773 insertions(+), 1182 deletions(-)
Title: A Collection of Functions for Directional Data Analysis
Description: A collection of functions for directional data (including massive data, with millions of observations) analysis.
Hypothesis testing, discriminant and regression analysis, MLE of distributions and more are included.
The standard textbook for such data is the "Directional Statistics" by Mardia, K. V. and Jupp, P. E. (2000).
Other references include:
a) Paine J.P., Preston S.P., Tsagris M. and Wood A.T.A. (2018). "An elliptically symmetric angular Gaussian distribution". Statistics and Computing 28(3): 689-697. <doi:10.1007/s11222-017-9756-4>.
b) Tsagris M. and Alenazi A. (2019). "Comparison of discriminant analysis methods on the sphere". Communications in Statistics: Case Studies, Data Analysis and Applications 5(4):467--491. <doi:10.1080/23737484.2019.1684854>.
c) Paine J.P., Preston S.P., Tsagris M. and Wood A.T.A. (2020). "Spherical regression models with general covariates and anisotropic errors". Statistics and Computing 30(1): 153--165. <doi:10.1007/s11222-019-09872 [...truncated...]
Author: Michail Tsagris [aut, cre],
Giorgos Athineou [aut],
Christos Adam [aut],
Zehao Yu [aut],
Anamul Sajib [ctb],
Eli Amson [ctb],
Micah J. Waldstein [ctb],
Panagiotis Papastamoulis [ctb]
Maintainer: Michail Tsagris <mtsagris@uoc.gr>
Diff between Directional versions 7.4 dated 2026-03-11 and 7.5 dated 2026-04-30
DESCRIPTION | 8 +-- MD5 | 33 ++++++++------- R/gcpc.mle.R | 6 +- R/gcpc.mle2.R |only R/spher.esag.contour.R | 95 +++++++++++++++++++++++++-------------------- R/spher.kent.contour.R | 65 ++++++++++++++++++------------ R/spher.mixvmf.contour.R | 64 +++++++++++++++++------------- R/spher.pkbd.contour.R | 57 ++++++++++++++++++--------- R/spher.purka.contour.R | 65 ++++++++++++++++++------------ R/spher.sespc.contour.R | 69 +++++++++++++++++++------------- R/spher.spcauchy.contour.R | 59 +++++++++++++++------------ R/spher.vmf.contour.R | 59 +++++++++++++++------------ man/Directional-package.Rd | 4 - man/dsespc.Rd | 3 - man/sespc.mle.Rd | 2 man/spml.mle.Rd | 11 ++++- man/spml.reg.Rd | 13 ++++-- man/vmf.mle.Rd | 3 - 18 files changed, 366 insertions(+), 250 deletions(-)
Title: Algorithms for Quantitative Pedology
Description: The Algorithms for Quantitative Pedology (AQP) project was started in 2009 to organize a loosely-related set of concepts and source code on the topic of soil profile visualization, aggregation, and classification into this package (aqp). Over the past 8 years, the project has grown into a suite of related R packages that enhance and simplify the quantitative analysis of soil profile data. Central to the AQP project is a new vocabulary of specialized functions and data structures that can accommodate the inherent complexity of soil profile information; freeing the scientist to focus on ideas rather than boilerplate data processing tasks <doi:10.1016/j.cageo.2012.10.020>. These functions and data structures have been extensively tested and documented, applied to projects involving hundreds of thousands of soil profiles, and deeply integrated into widely used tools such as SoilWeb <https://casoilresource.lawr.ucdavis.edu/soilweb-apps>. Components of the AQP project (aqp, soilD [...truncated...]
Author: Dylan Beaudette [aut, cre] ,
Pierre Roudier [aut, ctb],
Andrew Brown [aut, ctb],
Stephen Roecker [aut, ctb],
David Rossiter [ctb]
Maintainer: Dylan Beaudette <dylan.beaudette@usda.gov>
Diff between aqp versions 2.3.1 dated 2026-03-20 and 2.3.2 dated 2026-04-30
DESCRIPTION | 6 MD5 | 73 ++++++------ NAMESPACE | 1 NEWS.md | 12 + R/AAAA.R | 5 R/colorChart.R | 2 R/colorContrast.R | 27 ++++ R/colorVariation.R | 9 - R/contrastChart.R | 2 R/equivalentMunsellChips.R | 8 - R/estimateSoilColor.R | 50 +++++--- R/formatMunsell.R |only R/launderMunsell.R | 57 +++++++-- R/mixMunsell.R | 2 R/simulateColor.R | 2 R/soilColorIndices.R | 2 R/soilColorSignature.R | 2 R/validateMunsell.R | 2 data/munsell.rda |binary data/munsell.spectra.rda |binary data/munsell.spectra.wide.rda |binary inst/doc/Introduction-to-SoilProfileCollection-Objects.html | 68 +++++------ inst/doc/Munsell-color-conversion.R | 4 inst/doc/Munsell-color-conversion.Rmd | 13 +- inst/doc/Munsell-color-conversion.html | 16 +- inst/doc/label-placement.html | 12 - man/colorChart.Rd | 2 man/equivalentMunsellChips.Rd | 2 man/formatMunsell.Rd |only man/horizonColorIndices.Rd | 2 man/launderMunsell.Rd | 38 +++++- man/soilColorSignature.Rd | 2 man/validateMunsell.Rd | 2 tests/testthat/Rplots.pdf |binary tests/testthat/test-color-conversion.R | 28 ++-- tests/testthat/test-color-signature.R | 6 tests/testthat/test-formatMunsell.R |only tests/testthat/test-spec2Munsell.R | 2 vignettes/Munsell-color-conversion.Rmd | 13 +- 39 files changed, 309 insertions(+), 163 deletions(-)