Sun, 21 Jul 2024

Package MetaHD updated to version 0.1.2 with previous version 0.1.1 dated 2024-06-25

Title: A Multivariate Meta-Analysis Model for Metabolomics Data
Description: Performs multivariate meta-analysis for high-dimensional metabolomics data for integrating and collectively analysing individual-level metabolomics data generated from multiple studies as well as for combining summary estimates. This approach accounts for correlation between metabolites, considers variability within and between studies, handles missing values and uses shrinkage estimation to allow for high dimensionality. A detailed vignette with example datasets and code to prepare data and analyses are available on <https://bookdown.org/a2delivera/MetaHD/>.
Author: Jayamini Liyanage [aut, cre], Alysha De Livera [aut]
Maintainer: Jayamini Liyanage <j.liyanage@latrobe.edu.au>

Diff between MetaHD versions 0.1.1 dated 2024-06-25 and 0.1.2 dated 2024-07-21

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 MD5                |   10 +++++-----
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 6 files changed, 29 insertions(+), 35 deletions(-)

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Package wehoop updated to version 2.1.0 with previous version 2.0.0 dated 2023-11-25

Title: Access Women's Basketball Play by Play Data
Description: A utility for working with women's basketball data. A scraping and aggregating interface for the WNBA Stats API <https://stats.wnba.com/> and ESPN's <https://www.espn.com> women's college basketball and WNBA statistics. It provides users with the capability to access the game play-by-plays, box scores, standings and results to analyze the data for themselves.
Author: Saiem Gilani [aut, cre], Geoffery Hutchinson [aut]
Maintainer: Saiem Gilani <saiem.gilani@gmail.com>

Diff between wehoop versions 2.0.0 dated 2023-11-25 and 2.1.0 dated 2024-07-21

 DESCRIPTION                                        |   10 
 MD5                                                |  150 +--
 NAMESPACE                                          |    1 
 NEWS.md                                            |    8 
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 R/ncaa_wbb_data.R                                  |   10 
 R/utils_wnba_stats.R                               |   20 
 R/wnba_data_pbp.R                                  |    4 
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 R/wnba_stats_boxscore_v3.R                         |   38 
 R/wnba_stats_cume.R                                |   16 
 R/wnba_stats_draft.R                               |   30 
 R/wnba_stats_franchise.R                           |   18 
 R/wnba_stats_hustle.R                              |   18 
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 tests/testthat/test-wnba_teaminfocommon.R          |    2 
 77 files changed, 1426 insertions(+), 552 deletions(-)

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Package ChainLadder updated to version 0.2.19 with previous version 0.2.18 dated 2023-06-27

Title: Statistical Methods and Models for Claims Reserving in General Insurance
Description: Various statistical methods and models which are typically used for the estimation of outstanding claims reserves in general insurance, including those to estimate the claims development result as required under Solvency II.
Author: Markus Gesmann [aut, cre], Daniel Murphy [aut], Yanwei Zhang [aut], Alessandro Carrato [aut], Giuseppe Crupi [ctb], Christophe Dutang [ctb], Arnaud Lacoume [ctb], Arthur Charpentier [ctb], Mario Wuthrich [aut], Fabio Concina [aut], Eric Dal Moro [au [...truncated...]
Maintainer: Markus Gesmann <markus.gesmann@googlemail.com>

Diff between ChainLadder versions 0.2.18 dated 2023-06-27 and 0.2.19 dated 2024-07-21

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Package ganDataModel updated to version 1.1.7 with previous version 1.1.6 dated 2024-01-21

Title: Build a Metric Subspaces Data Model for a Data Source
Description: Neural networks are applied to create a density value function which approximates density values for a data source. The trained neural network is analyzed for different levels. For each level metric subspaces with density values above a level are determined. The obtained set of metric subspaces and the trained neural network are assembled into a data model. A prerequisite is the definition of a data source, the generation of generative data and the calculation of density values. These tasks are executed using package 'ganGenerativeData' <https://cran.r-project.org/package=ganGenerativeData>.
Author: Werner Mueller
Maintainer: Werner Mueller <werner.mueller5@chello.at>

Diff between ganDataModel versions 1.1.6 dated 2024-01-21 and 1.1.7 dated 2024-07-21

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 15 files changed, 136 insertions(+), 62 deletions(-)

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Package protr updated to version 1.7-2 with previous version 1.7-1 dated 2024-04-19

Title: Generating Various Numerical Representation Schemes for Protein Sequences
Description: Comprehensive toolkit for generating various numerical features of protein sequences described in Xiao et al. (2015) <DOI:10.1093/bioinformatics/btv042>. For full functionality, the software 'ncbi-blast+' is needed, see <https://blast.ncbi.nlm.nih.gov/doc/blast-help/downloadblastdata.html> for more information.
Author: Nan Xiao [aut, cre] , Qing-Song Xu [aut], Dong-Sheng Cao [aut], Sebastian Mueller [ctb]
Maintainer: Nan Xiao <me@nanx.me>

Diff between protr versions 1.7-1 dated 2024-04-19 and 1.7-2 dated 2024-07-21

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New package serocalculator with initial version 1.0.3
Package: serocalculator
Title: Estimating Infection Rates from Serological Data
Version: 1.0.3
Description: Translates antibody levels measured in cross-sectional population samples into estimates of the frequency with which seroconversions (infections) occur in the sampled populations. Replaces the previous 'seroincidence' package. Methods originally published in Simonsen et al. (2009) <doi:10.1002/sim.3592> and Teunis et al. (2012) <doi:10.1002/sim.5322>, and further developed in subsequent publications by de Graaf et al. (2014) <doi:10.1016/j.epidem.2014.08.002>, Teunis et al. (2016) <doi:10.1016/j.epidem.2016.04.001>, and Teunis et al. (2020) <doi:10.1002/sim.8578>.
Depends: R (>= 4.1.0)
License: GPL-3
Imports: doParallel, dplyr (>= 1.1.1), foreach, ggplot2, ggpubr, lifecycle, magrittr, mixtools, Rcpp, rlang, rngtools, scales, stats, tibble, tidyr, utils, cli
Suggests: parallel, knitr, rmarkdown, tidyverse, fs, testthat (>= 3.0.0), readr, bookdown, ggbeeswarm, DT
Encoding: UTF-8
URL: https://github.com/UCD-SERG/serocalculator, https://ucd-serg.github.io/serocalculator/
NeedsCompilation: yes
LinkingTo: Rcpp
Language: en-US
Packaged: 2024-07-18 18:59:57 UTC; kwlai
Author: Peter Teunis [aut, cph] , Kristina Lai [aut, cre], Chris Orwa [aut], Kristen Aiemjoy [aut], Douglas Ezra Morrison [aut]
Maintainer: Kristina Lai <kwlai@ucdavis.edu>
Repository: CRAN
Date/Publication: 2024-07-21 15:40:02 UTC

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Package PMwR updated to version 0.19-5 with previous version 0.19-3 dated 2023-10-19

Title: Portfolio Management with R
Description: Tools for the practical management of financial portfolios: backtesting investment and trading strategies, computing profit/loss and returns, analysing trades, handling lists of transactions, reporting, and more. The package provides a small set of reliable, efficient and convenient tools for processing and analysing trade/portfolio data. The Manual provides all the details; it is available from <https://enricoschumann.net/R/packages/PMwR/manual/PMwR.html>. Examples and descriptions of new features are provided at <https://enricoschumann.net/notes/PMwR/>.
Author: Enrico Schumann [aut, cre]
Maintainer: Enrico Schumann <es@enricoschumann.net>

Diff between PMwR versions 0.19-3 dated 2023-10-19 and 0.19-5 dated 2024-07-21

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New package tetRys with initial version 1.0
Package: tetRys
Title: Game of 'tetRys'
Version: 1.0
Date: 2024-07-19
Description: A game inspired by 'Tetris'. Opens a plot window device and starts a game of 'tetRys' in it. Steer the tetrominos with the arrow keys, press Pause to pause and Esc to end the game.
Depends: R (>= 3.5.0)
Imports: tcltk, grid, audio
License: GPL-3
Encoding: UTF-8
LazyData: true
NeedsCompilation: no
Packaged: 2024-07-19 05:06:51 UTC; ccroo
Author: Carsten Croonenbroeck [aut, cre]
Maintainer: Carsten Croonenbroeck <carsten.croonenbroeck@uni-rostock.de>
Repository: CRAN
Date/Publication: 2024-07-21 11:10:02 UTC

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Package Qval updated to version 0.1.7 with previous version 0.1.6 dated 2024-04-14

Title: The Q-Matrix Validation Methods Framework
Description: Provide a variety of Q-matrix validation methods for the generalized cognitive diagnosis models, including the method based on the generalized deterministic input, noisy, and gate model (G-DINA) by de la Torre (2011) <DOI:10.1007/s11336-011-9207-7> discrimination index (the GDI method) by de la Torre and Chiu (2016) <DOI:10.1007/s11336-015-9467-8>, the step-wise Wald test method (the Wald method) by Ma and de la Torre (2020) <DOI:10.1111/bmsp.12156>, the Hull method by Najera et al. (2021) <DOI:10.1111/bmsp.12228>, the multiple logistic regression‑based Q‑matrix validation method (the MLR-B method) by Tu et al. (2022) <DOI:10.3758/s13428-022-01880-x>. Different research methods during Q-matrix validating are available.
Author: Haijiang Qin [aut, cre, cph], Lei Guo [aut, cph]
Maintainer: Haijiang Qin <haijiang133@outlook.com>

Diff between Qval versions 0.1.6 dated 2024-04-14 and 0.1.7 dated 2024-07-21

 DESCRIPTION      |   10 +++++-----
 MD5              |    6 +++---
 R/CDM.R          |    2 +-
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 4 files changed, 19 insertions(+), 9 deletions(-)

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Package parameters updated to version 0.22.1 with previous version 0.22.0 dated 2024-06-20

Title: Processing of Model Parameters
Description: Utilities for processing the parameters of various statistical models. Beyond computing p values, CIs, and other indices for a wide variety of models (see list of supported models using the function 'insight::supported_models()'), this package implements features like bootstrapping or simulating of parameters and models, feature reduction (feature extraction and variable selection) as well as functions to describe data and variable characteristics (e.g. skewness, kurtosis, smoothness or distribution).
Author: Daniel Luedecke [aut, cre] , Dominique Makowski [aut] , Mattan S. Ben-Shachar [aut] , Indrajeet Patil [aut] , Soeren Hoejsgaard [aut], Brenton M. Wiernik [aut] , Zen J. Lau [ctb], Vincent Arel-Bundock [ctb] , Jeffrey Girard [ctb] , Christina Maimone [re [...truncated...]
Maintainer: Daniel Luedecke <d.luedecke@uke.de>

Diff between parameters versions 0.22.0 dated 2024-06-20 and 0.22.1 dated 2024-07-21

 DESCRIPTION                                     |   20 ++---
 MD5                                             |   71 ++++++++++--------
 NAMESPACE                                       |    4 +
 NEWS.md                                         |   36 ++++++++-
 R/equivalence_test.R                            |   93 ++++++++++++------------
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 38 files changed, 341 insertions(+), 180 deletions(-)

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New package centr with initial version 0.1.0
Package: centr
Title: Weighted and Unweighted Spatial Centers
Version: 0.1.0
Description: Generate mean and median weighted or unweighted spatial centers. Functions are analogous to their identically named counterparts within 'ArcGIS Pro'. Median center methodology based off of Kuhn and Kuenne (1962) <doi:10.1111/j.1467-9787.1962.tb00902.x>.
License: MIT + file LICENSE
Encoding: UTF-8
Imports: sf
URL: https://ryanzomorrodi.github.io/centr/, https://github.com/ryanzomorrodi/centR
Suggests: testthat (>= 3.0.0)
BugReports: https://github.com/ryanzomorrodi/centR/issues
NeedsCompilation: no
Packaged: 2024-07-19 13:33:06 UTC; user
Author: Ryan Zomorrodi [aut, cre, cph]
Maintainer: Ryan Zomorrodi <rzomor2@uic.edu>
Repository: CRAN
Date/Publication: 2024-07-21 11:20:02 UTC

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New package ResultModelManager with initial version 0.5.9
Package: ResultModelManager
Title: Result Model Manager
Version: 0.5.9
Description: Database data model management utilities for R packages in the Observational Health Data Sciences and Informatics program <https://ohdsi.org>. 'ResultModelManager' provides utility functions to allow package maintainers to migrate existing SQL database models, export and import results in consistent patterns.
URL: https://github.com/OHDSI/ResultModelManager
BugReports: https://github.com/OHDSI/ResultModelManager/issues
License: Apache License (== 2.0)
Encoding: UTF-8
VignetteBuilder: knitr
Depends: R (>= 4.1.0), R6, DatabaseConnector (>= 6.0.0)
Imports: SqlRender, ParallelLogger, checkmate, DBI, pool, readr, zip, dplyr, dbplyr, rlang, lubridate, fastmap, withr
Suggests: testthat (>= 3.0.0), RSQLite, duckdb, RPostgres, knitr, rmarkdown, keyring, devtools, pkgdown, remotes, styler, Andromeda
NeedsCompilation: no
Packaged: 2024-07-18 23:15:45 UTC; jgilber2
Author: Jamie Gilbert [aut, cre]
Maintainer: Jamie Gilbert <gilbert@ohdsi.org>
Repository: CRAN
Date/Publication: 2024-07-21 11:00:07 UTC

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New package minimapR with initial version 0.0.1.0
Package: minimapR
Title: Wrapper for 'minimap2'
Version: 0.0.1.0
Date: 2024-07-11
Maintainer: Jake Reed <hreed.ga@gmail.com>
Description: Wrapper for 'Minimap2'. 'Minimap2' is a very valuable long read aligner for the Pacbio and Oxford Nanopore Technologies sequencing platforms. 'minimapR' is an R wrapper for 'minimap2' which was developed by Heng Li <me@liheng.org>. *SPECIAL NOTES 1. Examples can only be run from 'GitHub' installation. 2. If using a Windows operating system, installation of the 'MSYS2' Linux emulator is required. 3. If using a Mac operating system, installation of 'Homebrew' is required. Li, Heng (2018) <doi:10.1093/bioinformatics/bty191> "Minimap2: pairwise alignment for nucleotide sequences".
License: MIT + file LICENSE
Depends: R (>= 4.0.0), Rsamtools, git2r, pafr
URL: https://github.com/jake-bioinfo/minimapR
Encoding: UTF-8
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2024-07-18 16:26:22 UTC; jake
Author: Jake Reed [aut, cre] , Pradyun Pulipaka [ctb]
Repository: CRAN
Date/Publication: 2024-07-21 10:10:02 UTC

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New package infiltrodiscR with initial version 0.0.5
Package: infiltrodiscR
Title: Minidisc Infiltrometer Data Management
Version: 0.0.5
Description: A set of functions for the modeling of data derived from the Minidisc Infiltrometer device. It calculates cumulative infiltration and square root of time. Also, it calculates the A parameter based on soil physical properties.
License: MIT + file LICENSE
Depends: R (>= 2.10)
Imports: dplyr, tidyr, utils
Suggests: testthat (>= 3.0.0), tibble, tidyverse
Encoding: UTF-8
LazyData: true
NeedsCompilation: no
Packaged: 2024-07-19 00:08:38 UTC; saryace
Author: Carolina V. Giraldo [aut] , Sara E. Acevedo [aut, cre] , Carlos A. Bonilla [aut]
Maintainer: Sara E. Acevedo <seaceved@uc.cl>
Repository: CRAN
Date/Publication: 2024-07-21 11:00:01 UTC

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New package geotoolsR with initial version 1.2.1
Package: geotoolsR
Title: Tools to Improve the Use of Geostatistic
Version: 1.2.1
Author: Diogo Francisco Rossoni [aut, cre] , Vinicius Basseto Felix [aut], Ricardo Puziol de Oliveira [ctb]
Maintainer: Diogo Francisco Rossoni <dfrossoni@uem.br>
Description: The basic idea of this package is provides some tools to help the researcher to work with geostatistics. Initially, we present a collection of functions that allow the researchers to deal with spatial data using bootstrap procedure. There are five methods available and two ways to display them: bootstrap confidence interval - provides a two-sided bootstrap confidence interval; bootstrap plot - a graphic with the original variogram and each of the B bootstrap variograms.
License: GPL (>= 2)
Encoding: UTF-8
LazyData: true
Depends: R (>= 2.10), geoR(>= 1.9), tidyr, dplyr, ggplot2
NeedsCompilation: no
Packaged: 2024-06-27 15:11:35 UTC; rpuzi
Repository: CRAN
Date/Publication: 2024-07-21 11:00:04 UTC

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New package COMMA with initial version 1.0.0
Package: COMMA
Title: Correcting Misclassified Mediation Analysis
Version: 1.0.0
Author: Kimberly Webb [aut, cre]
Maintainer: Kimberly Webb <kah343@cornell.edu>
Description: Use three methods to estimate parameters from a mediation analysis with a binary misclassified mediator. These methods correct for the problem of "label switching" using Youden's J criteria. A detailed description of the analysis methods is available in Webb and Wells (2024), "Effect estimation in the presence of a misclassified binary mediator" <doi:10.48550/arXiv.2407.06970>.
Depends: R (>= 4.2.0)
Imports: Matrix (> 1.4-1), turboEM (>= 2021.1)
Suggests: knitr (>= 1.40), kableExtra (>= 1.3.4), ggplot2 (>= 3.5.0), dplyr (>= 1.1.4), markdown (>= 1.13), stats (>= 4.3.1), svglite (>= 2.1.3)
License: MIT + file LICENSE
Encoding: UTF-8
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2024-07-18 15:37:41 UTC; kimho
Repository: CRAN
Date/Publication: 2024-07-21 10:10:05 UTC

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New package bodycompref with initial version 2.0.1
Package: bodycompref
Title: Reference Values for CT-Assessed Body Composition
Version: 2.0.1
Maintainer: J. Peter Marquardt <peter@kmarquardt.de>
Description: Get z-scores, percentiles, absolute values, and percent of predicted of a reference cohort. Functionality requires installing the data packages 'adiposerefdata' and 'musclerefdata'. For more information on the underlying research, please visit our website which also includes a graphical interface. The models and underlying data are described in Marquardt JP et al.(planned publication 2025; reserved doi 10.1097/RLI.0000000000001104), "Subcutaneous and Visceral adipose tissue Reference Values from Framingham Heart Study Thoracic and Abdominal CT", *Investigative Radiology* and Tonnesen PE et al. (2023), "Muscle Reference Values from Thoracic and Abdominal CT for Sarcopenia Assessment [column] The Framingham Heart Study", *Investigative Radiology*, <doi:10.1097/RLI.0000000000001012>.
URL: https://bodycomp-metrics.mgh.harvard.edu, https://github.com/p-mq/bodycompref
Depends: R (>= 4.0.0)
Imports: assertthat, gamlss, stats, sae
License: GPL (>= 3)
Encoding: UTF-8
Suggests: testthat (>= 3.0.0), usethis, adiposerefdata, musclerefdata, knitr, rmarkdown
Additional_repositories: https://p-mq.github.io/drat
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2024-07-18 18:20:28 UTC; petem
Author: J. Peter Marquardt [aut, cre]
Repository: CRAN
Date/Publication: 2024-07-21 10:20:01 UTC

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Package LifemapR (with last version 1.1.2) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2024-07-19 1.1.2
2024-03-20 1.1.1
2023-08-24 1.0.4

Permanent link
New package SumcaVer1 with initial version 0.1.0
Package: SumcaVer1
Title: Mean Square Prediction Error Estimation in Small Area Estimation
Version: 0.1.0
Maintainer: Mahmoud Torabi <mahmoud.torabi@umanitoba.ca>
Description: Estimation of mean squared prediction error of a small area predictor is provided. In particular, the recent method of Simple, Unified, Monte-Carlo Assisted approach for the mean squared prediction error estimation of small area predictor is provided. We also provide other existing methods of mean squared prediction error estimation such as jackknife method for the mixed logistic model.
License: MIT + file LICENSE
Encoding: UTF-8
Imports: lme4, psych, stats
NeedsCompilation: no
Packaged: 2024-07-18 14:04:05 UTC; ruwan
Author: Mahmoud Torabi [aut, cre], Jiming Jiang [ctb]
Repository: CRAN
Date/Publication: 2024-07-21 10:00:02 UTC

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New package moc.gapbk with initial version 0.1.1
Package: moc.gapbk
Title: Multi-Objective Clustering Algorithm Guided by a-Priori Biological Knowledge
Version: 0.1.1
Date: 2024-07-15
Author: Jorge Parraga-Alava [aut, cre]
Maintainer: Jorge Parraga-Alava <jorge.parraga@usach.cl>
Description: Implements the Multi-Objective Clustering Algorithm Guided by a-Priori Biological Knowledge (MOC-GaPBK) which was proposed by Parraga-Alava, J. et. al. (2018) <doi:10.1186/s13040-018-0178-4>. It was designed for clustering genes based on co-expression, biological coherence, compactness, and separation criteria. However, its flexible design allows it to be applied to cluster data of various types and domains. The algorithm optimizes object relationships based on two objective functions using cluster quality indexes, incorporating intensification and diversification strategies to enhance the search process.
Depends: R (>= 3.2.5)
License: GPL-2
Encoding: UTF-8
Imports: stats, amap, nsga2R, foreach, parallel, doParallel, utils, doSNOW, doMPI
Suggests: knitr, rmarkdown
NeedsCompilation: no
Packaged: 2024-07-18 01:05:00 UTC; UTM
Repository: CRAN
Date/Publication: 2024-07-21 09:10:02 UTC

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New package MLE with initial version 1.0
Package: MLE
Title: Maximum Likelihood Estimation of Various Univariate and Multivariate Distributions
Version: 1.0
Date: 2024-07-18
Author: Michail Tsagris [aut, cre], Sofia Piperaki [aut], Muhammad Imran [ctb]
Maintainer: Michail Tsagris <mtsagris@uoc.gr>
Depends: R (>= 4.0)
Imports: BGFD, bivpois, Compositional, Directional, geppe, gp, MN, Rfast, Rfast2, skellam
Suggests: mvcauchy
Description: Maximum likelihood estimation of various univariate and multivariate distributions. The list includes univariate continuous and discrete distributions, distributions that lie on the real line, the positive line, interval restricted, circular distributions. Further, multivariate continuous and discrete distributions, distributions for compositional and directional data, etc. Some references include Johnson N. L., Kotz S. and Balakrishnan N. (1994). "Continuous Univariate Distributions, Volume 1" <ISBN:978-0-471-58495-7>, Johnson, Norman L. Kemp, Adrianne W. Kotz, Samuel (2005). "Univariate Discrete Distributions". <ISBN:978-0-471-71580-1> and Mardia, K. V. and Jupp, P. E. (2000). "Directional Statistics". <ISBN:978-0-471-95333-3>.
License: GPL (>= 2)
NeedsCompilation: no
Packaged: 2024-07-18 10:16:19 UTC; mtsag
Repository: CRAN
Date/Publication: 2024-07-21 09:40:02 UTC

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New package mimdo with initial version 0.1.0
Package: mimdo
Title: Multivariate Imputation by Mahalanobis Distance Optimization
Version: 0.1.0
Author: Geovert John Labita [aut, cre]
Maintainer: Geovert John Labita <geovertjohn.labita@ustp.edu.ph>
Description: Imputes missing values of an incomplete data matrix by minimizing the Mahalanobis distance of each sample from the overall mean [Labita, GJ.D. and Tubo, B.F. (2024) <doi:10.24412/1932-2321-2024-278-115-123>].
License: GPL-3
Encoding: UTF-8
NeedsCompilation: no
Packaged: 2024-07-18 04:15:05 UTC; pc
Repository: CRAN
Date/Publication: 2024-07-21 09:20:02 UTC

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Package GSODR updated to version 4.1.0 with previous version 4.0.0 dated 2024-03-28

Title: Global Surface Summary of the Day ('GSOD') Weather Data Client
Description: Provides automated downloading, parsing, cleaning, unit conversion and formatting of Global Surface Summary of the Day ('GSOD') weather data from the from the USA National Centers for Environmental Information ('NCEI'). Units are converted from from United States Customary System ('USCS') units to International System of Units ('SI'). Stations may be individually checked for number of missing days defined by the user, where stations with too many missing observations are omitted. Only stations with valid reported latitude and longitude values are permitted in the final data. Additional useful elements, saturation vapour pressure ('es'), actual vapour pressure ('ea') and relative humidity ('RH') are calculated from the original data using the improved August-Roche-Magnus approximation (Alduchov & Eskridge 1996) and included in the final data set. The resulting metadata include station identification information, country, state, latitude, longitude, elevation, weather observatio [...truncated...]
Author: Adam H. Sparks [aut, cre] , Tomislav Hengl [aut] , Andrew Nelson [aut] , Hugh Parsonage [cph, ctb] , Taras Kaduk [ctb] , Gwenael Giboire [ctb] , Lukasz Pawlik [ctb] , Ross Darnell [ctb] , Tyler Widdison [ctb] ` did not return stations in order of nea [...truncated...]
Maintainer: Adam H. Sparks <adamhsparks@gmail.com>

Diff between GSODR versions 4.0.0 dated 2024-03-28 and 4.1.0 dated 2024-07-21

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 GSODR-4.1.0/GSODR/R/process_csv.R                           |   27 
 GSODR-4.1.0/GSODR/R/reformat_GSOD.R                         |   24 
 GSODR-4.1.0/GSODR/R/update_station_list.R                   |  110 ---
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 GSODR-4.1.0/GSODR/tests/testthat/test-nearest_stations.R    |    2 
 GSODR-4.1.0/GSODR/tests/testthat/test-reformat_GSOD.R       |    4 
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 41 files changed, 1205 insertions(+), 867 deletions(-)

More information about GSODR at CRAN
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New package trdist with initial version 1.0.1
Package: trdist
Title: Univariate Proability Distributions with Truncation
Version: 1.0.1
Date: 2024-07-17
Author: Jared Studyvin [aut, cre]
Depends: R (>= 3.6.0)
Imports:
Maintainer: Jared Studyvin <studyvinstat@gmail.com>
Description: Truncation of univariate probability distributions. The probability distribution can come from other packages so long as the function names follow the standard d, p, q, r naming format. Also other univariate probability distributions are included.
License: GNU General Public License
NeedsCompilation: no
Packaged: 2024-07-17 17:15:27 UTC; jaredstudyvin
Repository: CRAN
Date/Publication: 2024-07-21 09:00:02 UTC

More information about trdist at CRAN
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Package tinycodet updated to version 0.5.3 with previous version 0.5.0 dated 2024-05-07

Title: Functions to Help in your Coding Etiquette
Description: Adds some functions to help in your coding etiquette. 'tinycodet' primarily focuses on 4 aspects. 1) Safer decimal (in)equality testing, standard-evaluated alternatives to with() and aes(), and other functions for safer coding. 2) A new package import system, that attempts to combine the benefits of using a package without attaching it, with the benefits of attaching a package. 3) Extending the string manipulation capabilities of the 'stringi' R package. 4) Reducing repetitive code. Besides linking to 'Rcpp', 'tinycodet' has only one other dependency, namely 'stringi'.
Author: Tony Wilkes [aut, cre, cph]
Maintainer: Tony Wilkes <tony_a_wilkes@outlook.com>

Diff between tinycodet versions 0.5.0 dated 2024-05-07 and 0.5.3 dated 2024-07-21

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 tinycodet-0.5.3/tinycodet/R/RcppExports.R                                                  |    6 
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 tinycodet-0.5.3/tinycodet/R/import_misc.R                                                  |    8 
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 tinycodet-0.5.3/tinycodet/R/pkgs.R                                                         |   69 +--
 tinycodet-0.5.3/tinycodet/R/pro.R                                                          |    7 
 tinycodet-0.5.3/tinycodet/R/pversion.R                                                     |   17 
 tinycodet-0.5.3/tinycodet/R/report_inops.R                                                 |    6 
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 tinycodet-0.5.3/tinycodet/man/import_inops.Rd                                              |   20 -
 tinycodet-0.5.3/tinycodet/man/import_misc.Rd                                               |    6 
 tinycodet-0.5.3/tinycodet/man/lock.Rd                                                      |    5 
 tinycodet-0.5.3/tinycodet/man/matrix_ops.Rd                                                |    7 
 tinycodet-0.5.3/tinycodet/man/pkgs.Rd                                                      |   27 -
 tinycodet-0.5.3/tinycodet/man/pro.Rd                                                       |    2 
 tinycodet-0.5.3/tinycodet/man/report_inops.Rd                                              |    4 
 tinycodet-0.5.3/tinycodet/man/source_selection.Rd                                          |    5 
 tinycodet-0.5.3/tinycodet/man/str_arithmetic.Rd                                            |    6 
 tinycodet-0.5.3/tinycodet/man/str_subset_ops.Rd                                            |   17 
 tinycodet-0.5.3/tinycodet/man/strcut.Rd                                                    |    8 
 tinycodet-0.5.3/tinycodet/man/stri_join_mat.Rd                                             |    6 
 tinycodet-0.5.3/tinycodet/man/stri_locate_ith.Rd                                           |   28 -
 tinycodet-0.5.3/tinycodet/src/C_any_badloc.c                                               |only
 tinycodet-0.5.3/tinycodet/src/C_any_neg.c                                                  |   33 +
 tinycodet-0.5.3/tinycodet/src/C_any_nonpos.c                                               |   33 +
 tinycodet-0.5.3/tinycodet/src/RcppExports.cpp                                              |   47 --
 tinycodet-0.5.3/tinycodet/src/rcpp_import.cpp                                              |    2 
 tinycodet-0.5.3/tinycodet/src/rcpp_stri_locate_ith.cpp                                     |    8 
 tinycodet-0.5.3/tinycodet/tests/tinytest.R                                                 |   11 
 99 files changed, 982 insertions(+), 643 deletions(-)

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New package ROCsurf with initial version 0.1.0
Package: ROCsurf
Title: ROC Surface Analysis Under the Three-Class Problems
Version: 0.1.0
Maintainer: Ertan Akgenc <statistician.ertan@gmail.com>
Description: Receiver Operating Characteristic (ROC) analysis is performed assuming samples are from the proposed distributions. In addition, the volume under the ROC surface and true positive fractions values are evaluated by ROC surface analysis.
License: GPL-3
URL: https://github.com/ErtanSU/ROCsurf, https://ertansu.github.io/ROCsurf/
BugReports: https://github.com/ErtanSU/ROCsurf/issues
Imports: plotly, pracma, stats
Suggests: knitr, rmarkdown, testthat (>= 3.0.0)
Encoding: UTF-8
Language: en-US
NeedsCompilation: no
Packaged: 2024-07-17 16:12:34 UTC; stati
Author: Ertan Akgenc [cre, aut, cph] , Coskun Kus [aut, ctb]
Repository: CRAN
Date/Publication: 2024-07-21 09:00:05 UTC

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New package poldis with initial version 0.1.1
Package: poldis
Title: Analyse Political Texts
Version: 0.1.1
Date: 2024-07-17
Maintainer: Henrique Sposito <henrique.sposito@graduateinstitute.ch>
Description: Wrangle and annotate different types of political texts. It also introduces Urgency Analysis, a new method for the analysis of urgency in political texts.
URL: http://henriquesposito.com/poldis/
BugReports: https://github.com/henriquesposito/poldis/issues
License: MIT + file LICENSE
Imports: dplyr, stringr, purrr, stringi, quanteda, spacyr, textstem, tidyr, stringdist
Suggests: rmarkdown, testthat, tesseract, quanteda.textstats, keyATM, messydates, pdftools, fmsb, ggplot2, tm
Encoding: UTF-8
LazyData: True
Depends: R (>= 3.5.0)
NeedsCompilation: no
Packaged: 2024-07-17 15:47:40 UTC; henriquesposito
Author: Henrique Sposito [cre, aut, ctb] , James Hollway [ctb] , Jael Tan [ctb]
Repository: CRAN
Date/Publication: 2024-07-21 08:50:02 UTC

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New package kpcaIG with initial version 1.0
Package: kpcaIG
Title: Variables Interpretability with Kernel PCA
Version: 1.0
Maintainer: Mitja Briscik <mitja.briscik@math.univ-toulouse.fr>
Description: The kernelized version of principal component analysis (KPCA) has proven to be a valid nonlinear alternative for tackling the nonlinearity of biological sample spaces. However, it poses new challenges in terms of the interpretability of the original variables. 'kpcaIG' aims to provide a tool to select the most relevant variables based on the kernel PCA representation of the data as in Briscik et al. (2023) <doi:10.1186/s12859-023-05404-y>. It also includes functions for 2D and 3D visualization of the original variables (as arrows) into the kernel principal components axes, highlighting the contribution of the most important ones.
License: GPL-3
Encoding: UTF-8
Imports: grDevices, rgl, kernlab, ggplot2, stats, progress, viridis, WallomicsData
NeedsCompilation: no
Packaged: 2024-07-17 15:29:03 UTC; mbriscik
Author: Mitja Briscik [aut, cre], Mohamed Heimida [aut], Sebastien Dejean [aut]
Repository: CRAN
Date/Publication: 2024-07-21 08:50:05 UTC

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Package nullabor updated to version 0.3.12 with previous version 0.3.9 dated 2020-02-25

Title: Tools for Graphical Inference
Description: Tools for visual inference. Generate null data sets and null plots using permutation and simulation. Calculate distance metrics for a lineup, and examine the distributions of metrics.
Author: Hadley Wickham [aut, ctb] , Niladri Roy Chowdhury [aut, ctb], Di Cook [aut, cre] , Heike Hofmann [aut, ctb]
Maintainer: Di Cook <dicook@monash.edu>

Diff between nullabor versions 0.3.9 dated 2020-02-25 and 0.3.12 dated 2024-07-21

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 NAMESPACE                       |    1 
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 R/data.r                        |   26 ++
 R/method-model.r                |    4 
 R/power.r                       |    2 
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 25 files changed, 870 insertions(+), 517 deletions(-)

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Package Exact updated to version 3.3 with previous version 3.2 dated 2022-09-25

Title: Unconditional Exact Test
Description: Performs unconditional exact tests and power calculations for 2x2 contingency tables. For comparing two independent proportions, performs Barnard's test (1945) <doi:10.1038/156177a0> using the original CSM test (Barnard, 1947 <doi:10.1093/biomet/34.1-2.123>), using Fisher's p-value referred to as Boschloo's test (1970) <doi:10.1111/j.1467-9574.1970.tb00104.x>, or using a Z-statistic (Suissa and Shuster, 1985, <doi:10.2307/2981892>). For comparing two binary proportions, performs unconditional exact test using McNemar's Z-statistic (Berger and Sidik, 2003, <doi:10.1191/0962280203sm312ra>), using McNemar's conditional p-value, using McNemar's Z-statistic with continuity correction, or using CSM test. Calculates confidence intervals for the difference in proportion. This package interacts with pre-computed data available through the ExactData R package, which is available in a 'drat' repository. Install the ExactData R package from GitHub at <https://pcal [...truncated...]
Author: Peter Calhoun [aut, cre]
Maintainer: Peter Calhoun <calhoun.peter@gmail.com>

Diff between Exact versions 3.2 dated 2022-09-25 and 3.3 dated 2024-07-21

 DESCRIPTION       |    6 +++---
 MD5               |   10 +++++-----
 R/moreExtreme.R   |   27 ++++++++++++++++++++-------
 R/trinom.R        |    2 +-
 build/partial.rdb |binary
 inst/NEWS.Rd      |    7 +++++++
 6 files changed, 36 insertions(+), 16 deletions(-)

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Package precommit (with last version 0.4.2) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2024-04-10 0.4.2
2024-03-31 0.4.1
2024-01-21 0.4.0
2022-07-01 0.3.2
2022-06-15 0.3.1
2022-05-20 0.3.0
2021-12-14 0.2.1
2021-12-14 0.2.2
2021-12-01 0.2.0
2020-10-10 0.1.3
2020-06-13 0.1.2

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Package hutilscpp updated to version 0.10.5 with previous version 0.10.4 dated 2023-12-04

Title: Miscellaneous Functions in C++
Description: Provides utility functions that are simply, frequently used, but may require higher performance that what can be obtained from base R. Incidentally provides support for 'reverse geocoding', such as matching a point with its nearest neighbour in another array. Used as a complement to package 'hutils' by sacrificing compilation or installation time for higher running speeds. The name is a portmanteau of the author and 'Rcpp'.
Author: Hugh Parsonage [aut, cre], Simon Urbanek [ctb]
Maintainer: Hugh Parsonage <hugh.parsonage@gmail.com>

Diff between hutilscpp versions 0.10.4 dated 2023-12-04 and 0.10.5 dated 2024-07-21

 DESCRIPTION                   |    6 
 MD5                           |   28 +
 NEWS.md                       |  595 +++++++++++++++++++++---------------------
 R/as_integer_if_safe.R        |    5 
 R/prospect_hash.R             |only
 inst/tinytest/test-valgrind.R |    5 
 src/C_character2integer.c     |    8 
 src/C_empty.c                 |    2 
 src/Cand3s.c                  |    2 
 src/Cor3s.c                   |    2 
 src/character.c               |    4 
 src/dbl2int.c                 |   16 +
 src/error-warnings.c          |only
 src/hutilscpp.h               |    3 
 src/init.c                    |    4 
 src/pcg_hash.c                |   54 +++
 16 files changed, 413 insertions(+), 321 deletions(-)

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