Title: Hierarchical Partitioning of Adjusted R2 and Explained Deviance
for Generalized Additive Models
Description: Conducts hierarchical partitioning to calculate individual contributions of each predictor towards adjusted R2 and explained deviance for generalized additive models based on output of gam()in 'mgcv' package, applying the algorithm in this paper: Lai(2024) <doi:10.1016/j.pld.2024.06.002>.
Author: Jiangshan Lai [aut, cre] ,
Jing Tang [aut]
Maintainer: Jiangshan Lai <lai@njfu.edu.cn>
Diff between gam.hp versions 0.0-1 dated 2024-03-14 and 0.0-2 dated 2024-07-25
DESCRIPTION | 10 +++++----- MD5 | 8 ++++---- R/gam.hp.r | 1 + inst/CITATION | 37 +++++++++++-------------------------- man/gam.hp.Rd | 1 + 5 files changed, 22 insertions(+), 35 deletions(-)
Title: Systematically Run R CMD Checks
Description: Systematically Run R checks against multiple packages. Checks are run in
parallel with strategies to minimize dependency installation. Provides
out of the box interface for running reverse dependency check.
Author: Szymon Maksymiuk [cre, aut] ,
Doug Kelkhoff [aut] ,
F. Hoffmann-La Roche AG [cph, fnd]
Maintainer: Szymon Maksymiuk <sz.maksymiuk@gmail.com>
Diff between checked versions 0.1.0 dated 2024-07-10 and 0.2.0 dated 2024-07-25
checked-0.1.0/checked/man/message_possible_isolation_problems.Rd |only checked-0.2.0/checked/DESCRIPTION | 8 checked-0.2.0/checked/LICENSE | 2 checked-0.2.0/checked/MD5 | 48 +-- checked-0.2.0/checked/NAMESPACE | 9 checked-0.2.0/checked/NEWS.md | 29 +- checked-0.2.0/checked/R/check.R | 2 checked-0.2.0/checked/R/check_design.R | 138 ++++----- checked-0.2.0/checked/R/check_process.R | 41 +- checked-0.2.0/checked/R/checks_df.R | 83 +++-- checked-0.2.0/checked/R/cli.R | 5 checked-0.2.0/checked/R/install.R | 23 + checked-0.2.0/checked/R/next_task.R | 2 checked-0.2.0/checked/R/reporter_ansi_tty.R | 71 ++++ checked-0.2.0/checked/R/reporter_basic_tty.R | 23 + checked-0.2.0/checked/R/results.R | 143 ++++++---- checked-0.2.0/checked/R/task_graph.R | 11 checked-0.2.0/checked/R/utils.R | 11 checked-0.2.0/checked/README.md | 4 checked-0.2.0/checked/man/check_design.Rd | 92 ------ checked-0.2.0/checked/man/checked-package.Rd | 15 + checked-0.2.0/checked/man/checks_df.Rd | 10 checked-0.2.0/checked/man/print.checked_results.Rd |only checked-0.2.0/checked/man/results.Rd | 13 checked-0.2.0/checked/tests/testthat/test-check.R | 11 checked-0.2.0/checked/tests/testthat/test-checks_df.R | 2 26 files changed, 480 insertions(+), 316 deletions(-)
Title: Load US Census Boundary and Attribute Data as 'tidyverse' and
'sf'-Ready Data Frames
Description: An integrated R interface to several United States Census Bureau
APIs (<https://www.census.gov/data/developers/data-sets.html>) and the US Census Bureau's
geographic boundary files. Allows R users to return Census and ACS data as
tidyverse-ready data frames, and optionally returns a list-column with feature geometry for mapping
and spatial analysis.
Author: Kyle Walker [aut, cre],
Matt Herman [aut],
Kris Eberwein [ctb]
Maintainer: Kyle Walker <kyle@walker-data.com>
Diff between tidycensus versions 1.6.3 dated 2024-03-20 and 1.6.5 dated 2024-07-25
DESCRIPTION | 10 +++++----- MD5 | 10 +++++----- R/acs.R | 3 +++ R/estimates.R | 29 +++++++++++++++++------------ R/utils.R | 7 ++++++- man/tidycensus.Rd | 9 +++++++++ 6 files changed, 45 insertions(+), 23 deletions(-)
Title: Computing P-Values of the One-Sample K-S Test and the Two-Sample
K-S and Kuiper Tests for (Dis)Continuous Null Distribution
Description: Contains functions to compute p-values for the one-sample and two-sample Kolmogorov-Smirnov (KS) tests and the two-sample Kuiper test for any fixed critical level and arbitrary (possibly very large) sample sizes. For the one-sample KS test, this package implements a novel, accurate and efficient method named Exact-KS-FFT, which allows the pre-specified cumulative distribution function under the null hypothesis to be continuous, purely discrete or mixed. In the two-sample case, it is assumed that both samples come from an unspecified (unknown) continuous, purely discrete or mixed distribution, i.e. ties (repeated observations) are allowed, and exact p-values of the KS and the Kuiper tests are computed. Note, the two-sample Kuiper test is often used when data samples are on the line or on the circle (circular data). To cite this package in publication: (for the use of the one-sample KS test) Dimitrina S. Dimitrova, Vladimir K. Kaishev, and Senren Tan. Computing the Kolmogorov-Smirnov Dis [...truncated...]
Author: Dimitrina S. Dimitrova <D.Dimitrova@city.ac.uk>,
Yun Jia <yunjia2019@gmail.com>,
Vladimir K. Kaishev <Vladimir.Kaishev.1@city.ac.uk>,
Senren Tan <raymondtsrtsr@outlook.com>
Maintainer: Dimitrina S. Dimitrova <D.Dimitrova@city.ac.uk>
Diff between KSgeneral versions 2.0.0 dated 2024-05-21 and 2.0.1 dated 2024-07-25
DESCRIPTION | 6 +++--- MD5 | 22 +++++++++++----------- R/KS2sample.R | 2 +- R/Kuiper2sample.R | 2 +- build/partial.rdb |binary man/KS2sample.Rd | 6 +++--- man/KS2sample_Rcpp.Rd | 2 +- man/KS2sample_c_Rcpp.Rd | 2 +- man/Kuiper2sample.Rd | 6 +++--- man/Kuiper2sample_Rcpp.Rd | 2 +- man/Kuiper2sample_c_Rcpp.Rd | 2 +- man/ksgeneral-package.Rd | 6 +++--- 12 files changed, 29 insertions(+), 29 deletions(-)
Title: Modern Database Engine for Complex Data Based on
Multi-Dimensional Arrays
Description: The modern database 'TileDB' introduces a powerful on-disk
format for storing and accessing any complex data based on multi-dimensional
arrays. It supports dense and sparse arrays, dataframes and key-values stores,
cloud storage ('S3', 'GCS', 'Azure'), chunked arrays, multiple compression,
encryption and checksum filters, uses a fully multi-threaded implementation,
supports parallel I/O, data versioning ('time travel'), metadata and groups.
It is implemented as an embeddable cross-platform C++ library with APIs from
several languages, and integrations. This package provides the R support.
Author: TileDB, Inc. [aut, cph],
Dirk Eddelbuettel [cre]
Maintainer: Dirk Eddelbuettel <dirk@tiledb.com>
Diff between tiledb versions 0.28.0 dated 2024-06-07 and 0.29.0 dated 2024-07-25
DESCRIPTION | 8 MD5 | 90 +- NAMESPACE | 14 NEWS.md | 41 + R/Array.R | 38 + R/ArraySchema.R | 33 + R/ArraySchemaEvolution.R | 16 R/CurrentDomain.R |only R/DataFrame.R | 16 R/NDRectangle.R |only R/RcppExports.R | 48 + R/TileDBArray.R | 9 README.md | 2 build/vignette.rds |binary cleanup | 1 configure | 27 configure.ac | 10 inst/doc/data-ingestion-from-sql.html | 150 ++-- inst/doc/documentation.html | 224 +++---- inst/doc/installation-options.html | 150 ++-- inst/doc/introduction.html | 152 ++-- inst/doc/tiledb-mariadb-examples.html | 150 ++-- inst/include/tiledb.h | 13 inst/tinytest/test_arrayschema.R | 42 + inst/tinytest/test_arrayschemaevolution.R | 16 inst/tinytest/test_currentdomain.R |only inst/tinytest/test_dataframe.R | 25 inst/tinytest/test_fragmentinfo.R | 57 + inst/tinytest/test_ndrectangle.R |only inst/tinytest/test_timetravel.R | 2 man/fromDataFrame.Rd | 8 man/tiledb_array_delete_fragments_list.Rd |only man/tiledb_array_schema_evolution_expand_current_domain.Rd |only man/tiledb_array_schema_evolution_extend_enumeration.Rd | 3 man/tiledb_array_schema_get_current_domain.Rd |only man/tiledb_array_schema_set_current_domain.Rd |only man/tiledb_current_domain-class.Rd |only man/tiledb_current_domain.Rd |only man/tiledb_current_domain_get_ndrectangle.Rd |only man/tiledb_current_domain_get_type.Rd |only man/tiledb_current_domain_is_empty.Rd |only man/tiledb_current_domain_set_ndrectangle.Rd |only man/tiledb_ndrectangle-class.Rd |only man/tiledb_ndrectangle.Rd |only man/tiledb_ndrectangle_get_range.Rd |only man/tiledb_ndrectangle_set_range.Rd |only man/vfs_file.Rd | 8 src/Makevars.in | 6 src/RcppExports.cpp | 156 ++++ src/deprecation.cpp | 12 src/libtiledb.cpp | 234 +++++++ src/nanoarrow.c | 370 ++++++++++- src/nanoarrow.h | 213 ++++-- src/nanoarrow.hpp | 415 ++++++++++++- tools/tiledbVersion.txt | 4 55 files changed, 2191 insertions(+), 572 deletions(-)
Title: R Wrapper to Access a Wide Range of Germany's Federal
Statistical System Databases Based on the GENESIS Web Service
RESTful API of the German Federal Statistical Office
(Statistisches Bundesamt/Destatis)
Description: A RESTful API wrapper for accessing the GENESIS database of
the German Federal Statistical Office (Destatis) as well as its Census
Database and the database of Germany's regional statistics. Supports data
search functions, credential management, result caching, and handling
remote background jobs for large datasets.
Author: Yannik Buhl [aut, cre],
Zoran Kovacevic [aut] ,
Dorian Le Jeune [aut],
Long Nguyen [aut] ,
Johannes Ritter [aut]
Maintainer: Yannik Buhl <ybuhl@posteo.de>
Diff between restatis versions 0.1.0 dated 2023-06-30 and 0.2.0 dated 2024-07-25
restatis-0.1.0/restatis/R/gen_list_jobs.R |only restatis-0.1.0/restatis/data/evas_list_long_20220724.rda |only restatis-0.1.0/restatis/man/evas_list_long_20220724.Rd |only restatis-0.1.0/restatis/tests/testthat/catalogue1/api/catalogue/tables-c47d1c.json |only restatis-0.1.0/restatis/tests/testthat/catalogue3/api/catalogue/cubes-b8e23a.json |only restatis-0.1.0/restatis/tests/testthat/catalogue4/api/catalogue/cubes-6cb32c.json |only restatis-0.1.0/restatis/tests/testthat/catalogue4/api/catalogue/tables-c47d1c.json |only restatis-0.1.0/restatis/tests/testthat/catalogue5/api/catalogue/tables-d53922.json |only restatis-0.1.0/restatis/tests/testthat/catalogue6/api/catalogue/tables-d53922.json |only restatis-0.1.0/restatis/tests/testthat/cube1/api/data/cubefile-f31506.csv |only restatis-0.1.0/restatis/tests/testthat/meta1/api/metadata/table-7837de.json |only restatis-0.1.0/restatis/tests/testthat/meta2_fake/api/metadata/cube-8d0bb5.json |only restatis-0.1.0/restatis/tests/testthat/meta3/api/metadata/table-7837de.json |only restatis-0.1.0/restatis/tests/testthat/modified2/api/catalogue/modifieddata-ceb5a8.json |only restatis-0.1.0/restatis/tests/testthat/searchvars1/api/catalogue/variables-a1a6d0.json |only restatis-0.1.0/restatis/tests/testthat/searchvars2_fake |only restatis-0.1.0/restatis/tests/testthat/table1/api/data/tablefile-6dd2df.csv |only restatis-0.1.0/restatis/tests/testthat/values1/api/catalogue/values2variable-886f37.json |only restatis-0.1.0/restatis/tests/testthat/values2/api/catalogue/values2variable-cb5890.json |only restatis-0.1.0/restatis/tests/testthat/variables1/api/catalogue/variables2statistic-476d62.json |only restatis-0.1.0/restatis/tests/testthat/variables2_fake/api/catalogue/variables2statistic-3d1ffb.json |only restatis-0.1.0/restatis/tests/testthat/variables3/api/catalogue/variables2statistic-8da08f.json |only restatis-0.1.0/restatis/tests/testthat/xy_statistic1/api/catalogue/cubes2statistic-bacd2f.json |only restatis-0.1.0/restatis/tests/testthat/xy_statistic1/api/catalogue/tables2statistic-476d62.json |only restatis-0.1.0/restatis/tests/testthat/xy_statistic1/api/catalogue/variables2statistic-476d62.json |only restatis-0.1.0/restatis/tests/testthat/xy_statistic2/api/catalogue/tables2statistic-476d62.json |only restatis-0.1.0/restatis/tests/testthat/xy_statistic3/api/catalogue/tables2statistic-476d62.json |only restatis-0.1.0/restatis/tests/testthat/xy_variable1/api/catalogue/statistics2variable-0e956d.json |only restatis-0.1.0/restatis/tests/testthat/xy_variable1/api/catalogue/tables2variable-0e956d.json |only restatis-0.1.0/restatis/tests/testthat/xy_variable1/api/catalogue/timeseries2variable-b809d6.json |only restatis-0.1.0/restatis/tests/testthat/xy_variable2/api/catalogue/tables2variable-0e956d.json |only restatis-0.1.0/restatis/tests/testthat/xy_variable3/api/catalogue/tables2variable-0e956d.json |only restatis-0.2.0/restatis/DESCRIPTION | 45 restatis-0.2.0/restatis/LICENSE | 4 restatis-0.2.0/restatis/MD5 | 263 + restatis-0.2.0/restatis/NAMESPACE | 55 restatis-0.2.0/restatis/NEWS.md | 13 restatis-0.2.0/restatis/R/data.R | 23 restatis-0.2.0/restatis/R/gen_alternative_terms.R | 208 - restatis-0.2.0/restatis/R/gen_api.R | 103 restatis-0.2.0/restatis/R/gen_auth.R | 416 ++ restatis-0.2.0/restatis/R/gen_catalogue.R | 542 ++- restatis-0.2.0/restatis/R/gen_cube.R | 544 ++- restatis-0.2.0/restatis/R/gen_find.R | 1450 +++------- restatis-0.2.0/restatis/R/gen_jobs.R |only restatis-0.2.0/restatis/R/gen_logincheck.R |only restatis-0.2.0/restatis/R/gen_meta_data.R | 1038 +++---- restatis-0.2.0/restatis/R/gen_metadata.R |only restatis-0.2.0/restatis/R/gen_modified_data.R | 354 +- restatis-0.2.0/restatis/R/gen_objects2stat.R | 470 +-- restatis-0.2.0/restatis/R/gen_objects2var.R | 465 +-- restatis-0.2.0/restatis/R/gen_qualitysigns.R |only restatis-0.2.0/restatis/R/gen_table.R | 310 +- restatis-0.2.0/restatis/R/gen_update_evas.R |only restatis-0.2.0/restatis/R/gen_var2-val2.R | 810 +++-- restatis-0.2.0/restatis/R/globals.R |only restatis-0.2.0/restatis/R/restatis-package.R | 12 restatis-0.2.0/restatis/R/utils_dataprocessing.R |only restatis-0.2.0/restatis/R/utils_httr2.R |only restatis-0.2.0/restatis/R/zzz.R | 4 restatis-0.2.0/restatis/README.md | 181 - restatis-0.2.0/restatis/build/vignette.rds |binary restatis-0.2.0/restatis/data/evas_list.rda |only restatis-0.2.0/restatis/inst/doc/additional_parameter.R |only restatis-0.2.0/restatis/inst/doc/additional_parameter.Rmd |only restatis-0.2.0/restatis/inst/doc/additional_parameter.html |only restatis-0.2.0/restatis/inst/doc/restatis.R |only restatis-0.2.0/restatis/inst/doc/restatis.Rmd | 304 -- restatis-0.2.0/restatis/inst/doc/restatis.html | 1026 +++---- restatis-0.2.0/restatis/inst/httptest2/redact.R | 38 restatis-0.2.0/restatis/man/binding_lapply.Rd |only restatis-0.2.0/restatis/man/check_function_input.Rd |only restatis-0.2.0/restatis/man/check_results.Rd |only restatis-0.2.0/restatis/man/evas_list.Rd |only restatis-0.2.0/restatis/man/find_token.Rd |only restatis-0.2.0/restatis/man/forming_evas.Rd |only restatis-0.2.0/restatis/man/gen_alternative_terms.Rd | 77 restatis-0.2.0/restatis/man/gen_auth_ask.Rd |only restatis-0.2.0/restatis/man/gen_auth_get.Rd |only restatis-0.2.0/restatis/man/gen_auth_path.Rd |only restatis-0.2.0/restatis/man/gen_auth_save.Rd | 58 restatis-0.2.0/restatis/man/gen_catalogue.Rd | 103 restatis-0.2.0/restatis/man/gen_cube.Rd | 115 restatis-0.2.0/restatis/man/gen_download_job.Rd |only restatis-0.2.0/restatis/man/gen_find.Rd | 110 restatis-0.2.0/restatis/man/gen_list_jobs.Rd | 59 restatis-0.2.0/restatis/man/gen_logincheck.Rd |only restatis-0.2.0/restatis/man/gen_metadata.Rd | 102 restatis-0.2.0/restatis/man/gen_metadata_cube.Rd | 91 restatis-0.2.0/restatis/man/gen_metadata_statistic.Rd |only restatis-0.2.0/restatis/man/gen_metadata_stats.Rd | 56 restatis-0.2.0/restatis/man/gen_metadata_tab.Rd | 56 restatis-0.2.0/restatis/man/gen_metadata_table.Rd |only restatis-0.2.0/restatis/man/gen_metadata_val.Rd | 56 restatis-0.2.0/restatis/man/gen_metadata_value.Rd |only restatis-0.2.0/restatis/man/gen_metadata_var.Rd | 56 restatis-0.2.0/restatis/man/gen_metadata_variable.Rd |only restatis-0.2.0/restatis/man/gen_modified_data.Rd | 88 restatis-0.2.0/restatis/man/gen_objects2stat.Rd | 101 restatis-0.2.0/restatis/man/gen_objects2var.Rd | 101 restatis-0.2.0/restatis/man/gen_search_vars.Rd | 79 restatis-0.2.0/restatis/man/gen_signs.Rd |only restatis-0.2.0/restatis/man/gen_table.Rd | 114 restatis-0.2.0/restatis/man/gen_update_evas.Rd |only restatis-0.2.0/restatis/man/gen_val2var.Rd | 79 restatis-0.2.0/restatis/man/gen_val2var2stat.Rd | 90 restatis-0.2.0/restatis/man/gen_var2stat.Rd | 87 restatis-0.2.0/restatis/man/ggsub.Rd |only restatis-0.2.0/restatis/man/insert_and_save_credentials.Rd |only restatis-0.2.0/restatis/man/is_cube_metadata_header.Rd |only restatis-0.2.0/restatis/man/logincheck_http_error.Rd |only restatis-0.2.0/restatis/man/logincheck_stop_or_warn.Rd |only restatis-0.2.0/restatis/man/param_check_regionalkey.Rd |only restatis-0.2.0/restatis/man/param_check_year.Rd |only restatis-0.2.0/restatis/man/param_collapse_vec.Rd |only restatis-0.2.0/restatis/man/read_cube.Rd |only restatis-0.2.0/restatis/man/read_cube_block.Rd |only restatis-0.2.0/restatis/man/read_cube_data_lines.Rd |only restatis-0.2.0/restatis/man/read_cube_metadata_header.Rd |only restatis-0.2.0/restatis/man/rename_cube_data_columns.Rd |only restatis-0.2.0/restatis/man/resp_check_data.Rd |only restatis-0.2.0/restatis/man/restatis-package.Rd | 64 restatis-0.2.0/restatis/man/return_table_object.Rd |only restatis-0.2.0/restatis/man/rev_database_function.Rd |only restatis-0.2.0/restatis/man/spezifisch_create.Rd |only restatis-0.2.0/restatis/man/split_cube.Rd |only restatis-0.2.0/restatis/man/test_database_function.Rd |only restatis-0.2.0/restatis/man/test_if_error.Rd |only restatis-0.2.0/restatis/man/test_if_error_find.Rd |only restatis-0.2.0/restatis/man/test_if_error_light.Rd |only restatis-0.2.0/restatis/man/test_if_error_variables.Rd |only restatis-0.2.0/restatis/man/test_if_json.Rd |only restatis-0.2.0/restatis/man/test_if_okay.Rd |only restatis-0.2.0/restatis/man/test_if_process_further.Rd |only restatis-0.2.0/restatis/man/titel_search.Rd |only restatis-0.2.0/restatis/tests/testthat.R | 24 restatis-0.2.0/restatis/tests/testthat/catalogue1/api/catalogue/tables-30cbd2.json |only restatis-0.2.0/restatis/tests/testthat/catalogue2/api/catalogue/statistics-f5c1c1.json | 60 restatis-0.2.0/restatis/tests/testthat/catalogue3/api/catalogue/cubes-57cf25.json |only restatis-0.2.0/restatis/tests/testthat/catalogue4/api/catalogue/cubes-e28931.json |only restatis-0.2.0/restatis/tests/testthat/catalogue4/api/catalogue/statistics-c47d1c.json | 84 restatis-0.2.0/restatis/tests/testthat/catalogue4/api/catalogue/tables-e234ed.json |only restatis-0.2.0/restatis/tests/testthat/catalogue5/api/catalogue/tables-5b59e0.json |only restatis-0.2.0/restatis/tests/testthat/catalogue6/api/catalogue/tables-5b59e0.json |only restatis-0.2.0/restatis/tests/testthat/cube1/api/data/cubefile-4e2e46.csv |only restatis-0.2.0/restatis/tests/testthat/find1/api/find/find-c24582.json | 1447 +++++---- restatis-0.2.0/restatis/tests/testthat/find2_fake/api/find/find-ef22fd.json | 1285 ++++---- restatis-0.2.0/restatis/tests/testthat/find3/api/find/find-9961d3.json | 334 -- restatis-0.2.0/restatis/tests/testthat/logincheck1 |only restatis-0.2.0/restatis/tests/testthat/meta1/api/metadata/table-4041ce.json |only restatis-0.2.0/restatis/tests/testthat/meta2_fake/api/metadata/cube-844a6b.json |only restatis-0.2.0/restatis/tests/testthat/meta3/api/metadata/table-4041ce.json |only restatis-0.2.0/restatis/tests/testthat/modified1/api/catalogue/modifieddata-00f7a4.json | 62 restatis-0.2.0/restatis/tests/testthat/modified2/api/catalogue/modifieddata-7a2284.json |only restatis-0.2.0/restatis/tests/testthat/modified3/api/catalogue/modifieddata-00f7a4.json | 62 restatis-0.2.0/restatis/tests/testthat/modified4_fake/api/catalogue/modifieddata-66ae58.json | 46 restatis-0.2.0/restatis/tests/testthat/searchvars1/api/catalogue/variables-fa86e3.json |only restatis-0.2.0/restatis/tests/testthat/searchvars2 |only restatis-0.2.0/restatis/tests/testthat/setup.R | 2 restatis-0.2.0/restatis/tests/testthat/table1/api/data/tablefile-768a25.csv |only restatis-0.2.0/restatis/tests/testthat/terms1/api/catalogue/terms-6ad002.json | 296 +- restatis-0.2.0/restatis/tests/testthat/test_gen_alternative_terms.R | 125 restatis-0.2.0/restatis/tests/testthat/test_gen_api.R | 29 restatis-0.2.0/restatis/tests/testthat/test_gen_catalogue.R | 360 +- restatis-0.2.0/restatis/tests/testthat/test_gen_cube.R | 79 restatis-0.2.0/restatis/tests/testthat/test_gen_find.R | 210 - restatis-0.2.0/restatis/tests/testthat/test_gen_logincheck.R |only restatis-0.2.0/restatis/tests/testthat/test_gen_meta_data.R | 199 - restatis-0.2.0/restatis/tests/testthat/test_gen_modified_data.R | 231 - restatis-0.2.0/restatis/tests/testthat/test_gen_objects2stat.R | 242 - restatis-0.2.0/restatis/tests/testthat/test_gen_objects2var.R | 243 - restatis-0.2.0/restatis/tests/testthat/test_gen_search_vars.R | 193 - restatis-0.2.0/restatis/tests/testthat/test_gen_table.R | 81 restatis-0.2.0/restatis/tests/testthat/test_gen_val2var.R | 190 - restatis-0.2.0/restatis/tests/testthat/test_gen_var2stat.R | 234 - restatis-0.2.0/restatis/tests/testthat/values1/api/catalogue/values2variable-8361bb.json |only restatis-0.2.0/restatis/tests/testthat/values2/api/catalogue/values2variable-d9d8dc.json |only restatis-0.2.0/restatis/tests/testthat/variables1/api/catalogue/variables2statistic-49290a.json |only restatis-0.2.0/restatis/tests/testthat/variables2_fake/api/catalogue/variables2statistic-e15459.json |only restatis-0.2.0/restatis/tests/testthat/variables3/api/catalogue/variables2statistic-f8d69a.json |only restatis-0.2.0/restatis/tests/testthat/xy_statistic1/api/catalogue/cubes2statistic-30c942.json |only restatis-0.2.0/restatis/tests/testthat/xy_statistic1/api/catalogue/tables2statistic-30c942.json |only restatis-0.2.0/restatis/tests/testthat/xy_statistic1/api/catalogue/variables2statistic-30c942.json |only restatis-0.2.0/restatis/tests/testthat/xy_statistic2/api/catalogue/tables2statistic-30c942.json |only restatis-0.2.0/restatis/tests/testthat/xy_statistic3/api/catalogue/tables2statistic-30c942.json |only restatis-0.2.0/restatis/tests/testthat/xy_variable1/api/catalogue/statistics2variable-93dc8a.json |only restatis-0.2.0/restatis/tests/testthat/xy_variable1/api/catalogue/tables2variable-93dc8a.json |only restatis-0.2.0/restatis/tests/testthat/xy_variable1/api/catalogue/timeseries2variable-93dc8a.json |only restatis-0.2.0/restatis/tests/testthat/xy_variable2/api/catalogue/tables2variable-93dc8a.json |only restatis-0.2.0/restatis/tests/testthat/xy_variable3/api/catalogue/tables2variable-93dc8a.json |only restatis-0.2.0/restatis/vignettes/additional_parameter.Rmd |only restatis-0.2.0/restatis/vignettes/restatis.Rmd | 304 -- restatis-0.2.0/restatis/vignettes/restatis.Rmd.orig | 214 - 193 files changed, 8915 insertions(+), 8141 deletions(-)
Title: R Interface to the Data Retriever
Description: Provides an R interface to the Data Retriever
<https://retriever.readthedocs.io/en/latest/> via the Data Retriever's
command line interface. The Data Retriever automates the
tasks of finding, downloading, and cleaning public datasets,
and then stores them in a local database.
Author: Henry Senyondo [aut, cre] ,
Daniel McGlinn [aut] ,
Pranita Sharma [aut] ,
David J Harris [aut] ,
Hao Ye [aut] ,
Shawn Taylor [aut] ,
Jeroen Ooms [aut] ,
Francisco Rodriguez-Sanchez Ooms [aut]
,
Karthik Ram [aut] ,
Apoorva Pandey [aut] ,
Harshit Bansa [...truncated...]
Maintainer: Henry Senyondo <henrykironde@gmail.com>
Diff between rdataretriever versions 3.1.0 dated 2022-05-18 and 3.1.1 dated 2024-07-25
DESCRIPTION | 12 MD5 | 18 - README.md | 6 build/vignette.rds |binary inst/CITATION | 36 +- inst/doc/breed-bird-survey-analysis.R | 24 - inst/doc/breed-bird-survey-analysis.html | 406 +++++++++++++++++++------------ inst/doc/provenance.R | 2 inst/doc/provenance.html | 237 +++++++++++------- man/install_retriever.Rd | 4 10 files changed, 462 insertions(+), 283 deletions(-)
More information about rdataretriever at CRAN
Permanent link
Title: 'NoSQL' Database Connector
Description: Simplified JSON document database access and manipulation,
providing a common API across supported 'NoSQL' databases
'Elasticsearch', 'CouchDB', 'MongoDB' as well as
'SQLite/JSON1', 'PostgreSQL', and 'DuckDB'.
Author: Ralf Herold [aut, cre] ,
Scott Chamberlain [aut] ,
Rich FitzJohn [aut],
Jeroen Ooms [aut]
Maintainer: Ralf Herold <ralf.herold@mailbox.org>
Diff between nodbi versions 0.10.5 dated 2024-06-30 and 0.10.6 dated 2024-07-25
DESCRIPTION | 10 - MD5 | 24 +- NEWS.md | 9 + R/create.R | 5 R/delete.R | 42 ++-- R/query.R | 75 +++++--- R/src_duckdb.R | 4 R/src_sqlite.R | 5 R/zzz.R | 59 +++---- build/vignette.rds |binary inst/doc/nodbi-overview.html | 362 +++++++++++++++++++++---------------------- tests/testthat/core-nodbi.R | 2 tests/testthat/helper.R | 2 13 files changed, 319 insertions(+), 280 deletions(-)
Title: Easy-to-Use, Dependencyless Logger
Description: An easy-to-use 'ndjson' (newline-delimited 'JSON') logger.
It provides a set of wrappers for base R's message(), warning(), and
stop() functions that maintain identical functionality, but also log
the handler message to an 'ndjson' log file.
No change in existing code is necessary to use this package,
and only a few additional adjustments are needed to fully
utilize its potential.
Author: Matthias Ollech [cre, aut],
Ryan Price [fnd, aut]
Maintainer: Matthias Ollech <ollech@gmx.com>
Diff between loggit2 versions 2.3.0 dated 2024-06-08 and 2.3.1 dated 2024-07-25
DESCRIPTION | 13 - LICENSE | 2 MD5 | 120 +++++----- NAMESPACE | 40 +-- NEWS.md | 167 +++++++------- R/configurations.R | 338 ++++++++++++++-------------- R/handlers.R | 406 +++++++++++++++++----------------- R/json.R | 282 ++++++++++++------------ R/loggit.R | 201 ++++++++++------- R/setup.R | 154 ++++++------- R/split_json.R | 32 +- R/utils.R | 312 +++++++++++++------------- R/whit_loggit.R | 110 ++++----- R/zzz.R | 14 - inst/doc/further_configurations.html | 32 +- inst/doc/further_configurations.rmd | 273 +++++++++++------------ inst/doc/loggit2.Rmd | 411 +++++++++++++++++------------------ inst/doc/loggit2.html | 80 +++--- man/convert_lvl_input.Rd | 36 +-- man/convert_to_csv.Rd | 84 +++---- man/find_call.Rd | 32 +- man/get_echo.Rd | 28 +- man/get_log_level.Rd | 28 +- man/get_logfile.Rd | 36 +-- man/get_lvl_int.Rd | 36 +-- man/get_lvl_name.Rd | 36 +-- man/get_timestamp_format.Rd | 36 +-- man/loggit.Rd | 104 ++++---- man/loggit_dots.Rd |only man/loggit_internal.Rd |only man/message.Rd | 90 +++---- man/read_logs.Rd | 64 ++--- man/read_ndjson.Rd | 44 +-- man/rotate_logs.Rd | 56 ++-- man/sanitizers.Rd | 80 +++--- man/set_echo.Rd | 52 ++-- man/set_log_level.Rd | 74 +++--- man/set_logfile.Rd | 64 ++--- man/set_timestamp_format.Rd | 66 ++--- man/setup_echo.Rd | 40 +-- man/setup_log_level.Rd | 40 +-- man/setup_logfile.Rd | 34 +- man/setup_timestamp_format.Rd | 34 +- man/split_ndjson.Rd | 46 +-- man/stop.Rd | 92 +++---- man/stopifnot.Rd | 116 ++++----- man/warning.Rd | 120 +++++----- man/with_loggit.Rd | 100 ++++---- man/write_ndjson.Rd | 58 ++-- src/split_json.cpp | 14 - tests/testthat.R | 8 tests/testthat/setup.R | 150 ++++++------ tests/testthat/test-configurations.R | 188 ++++++++-------- tests/testthat/test-handlers.R | 329 ++++++++++++++-------------- tests/testthat/test-json.R | 84 +++---- tests/testthat/test-loggit.R | 116 ++++----- tests/testthat/test-utils.R | 292 ++++++++++++------------ tests/testthat/test-whit_loggit.R | 158 ++++++------- tests/testthat/testdata/test.loggit | 12 - vignettes/articles/fork.rmd | 243 ++++++++++---------- vignettes/further_configurations.rmd | 273 +++++++++++------------ vignettes/loggit2.Rmd | 411 +++++++++++++++++------------------ 62 files changed, 3537 insertions(+), 3454 deletions(-)
Title: Fitting Second-Order Tensor Data
Description: An implementation of fitting generalized linear models on
second-order tensor type data. The functions within this package mainly focus on
parameter estimation, including parameter coefficients and standard deviation.
Author: Mark Chen [aut, cre],
Sheng-Mao Chang [aut],
Wenbin Lu [aut],
Jung-Ying Tzeng [aut],
Ping-Yang Chen [aut]
Maintainer: Mark Chen <l501l501l@gmail.com>
Diff between TensorTest2D versions 1.1.1 dated 2022-01-03 and 1.1.2 dated 2024-07-25
DESCRIPTION | 10 MD5 | 50 - R/TensorTest2D.R | 2 R/mnist_mp2c2-data.R | 86 +-- R/omics-data.R | 112 ++-- R/summary.tsglm.R | 382 +++++++------- R/tensorReg2D.R | 1262 ++++++++++++++++++++++++------------------------ R/util.tsglm.R | 602 +++++++++++----------- README.md | 53 +- man/ALS.Rd | 68 +- man/Calculate_IC_Dev.Rd | 68 +- man/Check_tidy_input.Rd | 68 +- man/TensorTest2D.Rd | 61 +- man/VAR_ALS.Rd | 68 +- man/draw.coef.Rd | 100 +-- man/getGLMCoef.Rd | 48 - man/grapes-b-grapes.Rd | 42 - man/grapes-hp-grapes.Rd | 48 - man/grapes-w-grapes.Rd | 44 - man/grapes-wt-grapes.Rd | 44 - man/mnist_mp2c2.Rd | 100 +-- man/omics.Rd | 122 ++-- man/plot.tsglm.Rd | 186 +++---- man/predict.tsglm.Rd | 166 +++--- man/summary.tsglm.Rd | 198 +++---- man/tensorReg2D.Rd | 358 ++++++------- 26 files changed, 2200 insertions(+), 2148 deletions(-)
Title: Matrix Functions for Teaching and Learning Linear Algebra and
Multivariate Statistics
Description: A collection of matrix functions for teaching and learning matrix
linear algebra as used in multivariate statistical methods. These functions are
mainly for tutorial purposes in learning matrix algebra ideas using R. In some
cases, functions are provided for concepts available elsewhere in R, but where
the function call or name is not obvious. In other cases, functions are provided
to show or demonstrate an algorithm. In addition, a collection of functions are
provided for drawing vector diagrams in 2D and 3D.
Author: Michael Friendly [aut, cre] ,
John Fox [aut] ,
Phil Chalmers [aut] ,
Georges Monette [ctb] ,
Gaston Sanchez [ctb]
Maintainer: Michael Friendly <friendly@yorku.ca>
Diff between matlib versions 0.9.6 dated 2022-12-08 and 0.9.8 dated 2024-07-25
DESCRIPTION | 32 - MD5 | 85 +-- NAMESPACE | 6 NEWS.md | 12 R/GramSchmidt.R | 22 R/circle.R |only R/gaussian-elimination.R | 9 R/matlib-package.R | 2 R/matrix2latex.R | 65 +- R/util.R | 5 R/vectors.R | 7 R/vectors3d.R | 2 build/vignette.rds |binary inst/doc/data-beta.html | 1130 ++++++++++++++++++++++------------------ inst/doc/det-ex1.html | 126 ++-- inst/doc/det-ex2.html | 80 +- inst/doc/eigen-ex1.R | 2 inst/doc/eigen-ex1.html | 54 - inst/doc/eigen-ex2.R | 2 inst/doc/eigen-ex2.html | 68 +- inst/doc/ginv.html | 50 - inst/doc/gramreg.html | 104 +-- inst/doc/inv-ex1.html | 140 ++-- inst/doc/inv-ex2.html | 78 +- inst/doc/linear-equations.R | 4 inst/doc/linear-equations.html | 1062 +++++++++++++++++++++---------------- man/GramSchmidt.Rd | 13 man/Inverse.Rd | 76 +- man/Proj.Rd | 4 man/arc.Rd | 4 man/arrows3d.Rd | 4 man/circle.Rd |only man/circle3d.Rd | 4 man/corner.Rd | 4 man/figures/logo.png |only man/getYmult.Rd |only man/matlib-package.Rd | 133 ++-- man/matrix2latex.Rd | 33 - man/plot.regvec3d.Rd | 4 man/pointOnLine.Rd | 4 man/regvec3d.Rd | 4 man/swp.Rd | 94 +-- man/vectors3d.Rd | 2 vignettes/file75fc193c2d21.html |only vignettes/file75fc2d985765.html |only vignettes/file75fc37d71f65.html |only vignettes/file75fc68d870a4.html |only vignettes/file75fc756d1ecc.html |only 48 files changed, 1980 insertions(+), 1550 deletions(-)
Title: Set of Tools to Data Analysis using Generalized Linear Models
Description: Set of tools for the statistical analysis of data using: (1) normal linear models; (2) generalized linear models; (3) negative binomial regression models as alternative to the Poisson regression models under the presence of overdispersion; (4) beta-binomial and random-clumped binomial regression models as alternative to the binomial regression models under the presence of overdispersion; (5) Zero-inflated and zero-altered regression models to deal with zero-excess in count data; (6) generalized nonlinear models; (7) generalized estimating equations for cluster correlated data.
Author: Luis Hernando Vanegas [aut, cre],
Luz Marina Rondon [aut],
Gilberto A. Paula [aut]
Maintainer: Luis Hernando Vanegas <lhvanegasp@unal.edu.co>
Diff between glmtoolbox versions 0.1.11 dated 2024-04-12 and 0.1.12 dated 2024-07-25
DESCRIPTION | 8 +- MD5 | 70 ++++++++++++----------- NAMESPACE | 4 + R/data.R | 109 ++++++++++++++++++++++++++++++++---- R/geeglm.R | 39 +++++++----- R/glms.R | 12 +-- R/overglm3.R | 14 ++-- data/paramecium.rda |only man/BoxTidwell.Rd | 2 man/BoxTidwell.glm.Rd | 2 man/BoxTidwell.lm.Rd | 2 man/QIC.Rd | 2 man/cooks.distance.glmgee.Rd | 2 man/cooks.distance.gnm.Rd | 2 man/cooks.distance.overglm.Rd | 2 man/cooks.distance.zeroinflation.Rd | 2 man/envelope.glm.Rd | 2 man/envelope.gnm.Rd | 2 man/glance.glmgee.Rd |only man/glmgee.Rd | 5 - man/gnm.Rd | 6 + man/gnmgee.Rd | 12 ++- man/leverage.glmgee.Rd | 2 man/localInfluence.glm.Rd | 2 man/localInfluence.glmgee.Rd | 2 man/localInfluence.gnm.Rd | 2 man/localInfluence.overglm.Rd | 2 man/paramecium.Rd |only man/predict.glmgee.Rd | 2 man/residuals.glmgee.Rd | 2 man/residuals.gnm.Rd | 4 - man/residuals.overglm.Rd | 2 man/residuals.zeroinflation.Rd | 2 man/residuals2.Rd | 4 - man/tidy.glmgee.Rd |only man/wglmgee.Rd | 2 man/zeroalt.Rd | 2 man/zeroinf.Rd | 2 38 files changed, 224 insertions(+), 107 deletions(-)
Title: Convert R Models to PMML
Description: R wrapper for the JPMML-R library <https://github.com/jpmml/jpmml-r>,
which converts R models to Predictive Model Markup Language (PMML).
Author: Villu Ruusmann <villu.ruusmann@gmail.com>
Maintainer: Villu Ruusmann <villu.ruusmann@gmail.com>
Diff between r2pmml versions 0.27.1 dated 2023-04-05 and 0.28.0 dated 2024-07-25
r2pmml-0.27.1/r2pmml/inst/java/gson-2.10.jar |only r2pmml-0.27.1/r2pmml/inst/java/guava-21.0-minified.jar |only r2pmml-0.27.1/r2pmml/inst/java/jackson-annotations-2.13.3.jar |only r2pmml-0.27.1/r2pmml/inst/java/pmml-converter-1.5.4.jar |only r2pmml-0.27.1/r2pmml/inst/java/pmml-model-1.6.4.jar |only r2pmml-0.27.1/r2pmml/inst/java/pmml-model-metro-1.6.4.jar |only r2pmml-0.27.1/r2pmml/inst/java/pmml-rexp-1.5.2.jar |only r2pmml-0.27.1/r2pmml/inst/java/pmml-rexp-xgboost-1.5.2.jar |only r2pmml-0.27.1/r2pmml/inst/java/pmml-xgboost-1.7.3.jar |only r2pmml-0.27.1/r2pmml/java/pmml-converter-1.5.4-sources.jar |only r2pmml-0.27.1/r2pmml/java/pmml-rexp-1.5.2-sources.jar |only r2pmml-0.27.1/r2pmml/java/pmml-rexp-xgboost-1.5.2-sources.jar |only r2pmml-0.27.1/r2pmml/java/pmml-xgboost-1.7.3-sources.jar |only r2pmml-0.28.0/r2pmml/DESCRIPTION | 8 +- r2pmml-0.28.0/r2pmml/MD5 | 32 +++++----- r2pmml-0.28.0/r2pmml/NEWS.md |only r2pmml-0.28.0/r2pmml/README.md | 2 r2pmml-0.28.0/r2pmml/inst/java/gson-2.9.1.jar |only r2pmml-0.28.0/r2pmml/inst/java/guava-15.0-minified.jar |only r2pmml-0.28.0/r2pmml/inst/java/pmml-converter-1.5.7.jar |only r2pmml-0.28.0/r2pmml/inst/java/pmml-model-1.6.5.jar |only r2pmml-0.28.0/r2pmml/inst/java/pmml-model-metro-1.6.5.jar |only r2pmml-0.28.0/r2pmml/inst/java/pmml-rexp-1.5.6.jar |only r2pmml-0.28.0/r2pmml/inst/java/pmml-rexp-xgboost-1.5.6.jar |only r2pmml-0.28.0/r2pmml/inst/java/pmml-xgboost-1.8.6.jar |only r2pmml-0.28.0/r2pmml/inst/java/r2pmml-1.0-SNAPSHOT.jar |binary r2pmml-0.28.0/r2pmml/java/pmml-converter-1.5.7-sources.jar |only r2pmml-0.28.0/r2pmml/java/pmml-rexp-1.5.6-sources.jar |only r2pmml-0.28.0/r2pmml/java/pmml-rexp-xgboost-1.5.6-sources.jar |only r2pmml-0.28.0/r2pmml/java/pmml-xgboost-1.8.6-sources.jar |only 30 files changed, 21 insertions(+), 21 deletions(-)
Title: Regulatory Tables for Clinical Research
Description: Creates tables suitable for regulatory agency submission by
leveraging the 'gtsummary' package as the back end. Tables can be exported
to HTML, Word, PDF and more. Highly customized outputs are
available by utilizing existing styling functions from 'gtsummary' as
well as custom options designed for regulatory tables.
Author: Shannon Pileggi [aut, cre, cph]
,
Daniel D. Sjoberg [aut]
Maintainer: Shannon Pileggi <shannon.pileggi@gmail.com>
Diff between gtreg versions 0.3.0 dated 2023-11-17 and 0.4.0 dated 2024-07-25
DESCRIPTION | 8 MD5 | 32 NAMESPACE | 2 NEWS.md | 98 +- R/reexport.R | 4 R/selectors.R | 178 +--- R/tbl_listing.R | 4 R/tbl_reg_summary.R | 150 +-- R/utils-tbl_ae.R | 38 README.md | 3 build/vignette.rds |binary inst/doc/further_documentation.R | 2 man/reexports.Rd | 5 man/tbl_reg_summary.Rd | 68 - tests/testthat/_snaps/style_xxx.md | 1645 +------------------------------------ tests/testthat/test-style_xxx.R | 6 tests/testthat/test-tbl_ae.R | 1508 ++++++++++++++++----------------- 17 files changed, 1146 insertions(+), 2605 deletions(-)
Title: Create Ternary and Holdridge Plots
Description: Plots ternary diagrams (simplex plots / Gibbs triangles) and
Holdridge life zone plots <doi:10.1126/science.105.2727.367> using the
standard graphics functions.
Allows custom annotation, interpolating, contouring and scaling of plotting
region.
Includes a 'Shiny' user interface for point-and-click ternary plotting.
An alternative to 'ggtern', which uses the 'ggplot2' family of plotting
functions.
Author: Martin R. Smith [aut, cre, cph]
,
Lilian Sanselme [ctb]
Maintainer: Martin R. Smith <martin.smith@durham.ac.uk>
Diff between Ternary versions 2.3.1 dated 2024-02-06 and 2.3.2 dated 2024-07-25
DESCRIPTION | 12 +++-- MD5 | 62 ++++++++++++++--------------- NEWS.md | 4 + R/Contours.R | 5 +- R/Holdridge.R | 3 - R/TernaryPlot.R | 5 +- R/data.R | 7 +-- R/dot-TrianglePlot.R | 7 +-- build/partial.rdb |binary build/vignette.rds |binary inst/WORDLIST | 1 inst/doc/Holdridge.R | 8 +++ inst/doc/Holdridge.Rmd | 86 +++++++++++++++++++++++++++++++++++++++-- inst/doc/Holdridge.html | 76 +++++++++++++++++++++++++++++++++--- inst/doc/Ternary.R | 2 inst/doc/Ternary.Rmd | 2 inst/doc/Ternary.html | 10 ++-- inst/doc/annotation.html | 4 - inst/doc/interpolation.html | 4 - inst/doc/new-users.Rmd | 39 ++++++++++++++++++ inst/doc/new-users.html | 41 ++++++++++++++++++- man/AddToTernary.Rd | 4 - man/ColourTernary.Rd | 3 - man/HoldridgeHypsometricCol.Rd | 4 - man/HoldridgePlot.Rd | 11 ++--- man/TernaryContour.Rd | 2 man/TernaryPlot.Rd | 5 +- man/holdridgeClasses.Rd | 5 -- tests/testthat/Rplots.pdf |binary vignettes/Holdridge.Rmd | 86 +++++++++++++++++++++++++++++++++++++++-- vignettes/Ternary.Rmd | 2 vignettes/new-users.Rmd | 39 ++++++++++++++++++ 32 files changed, 446 insertions(+), 93 deletions(-)
Title: 'Amazon Web Service S3' File System
Description: Access 'Amazon Web Service Simple Storage Service' ('S3') <https://aws.amazon.com/s3/>
as if it were a file system. Interface based on the R package 'fs'.
Author: Dyfan Jones [aut, cre]
Maintainer: Dyfan Jones <dyfan.r.jones@gmail.com>
Diff between s3fs versions 0.1.5 dated 2024-03-15 and 0.1.6 dated 2024-07-25
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- NEWS.md | 4 ++++ R/s3filesystem_class.R | 18 ++++++++++-------- 4 files changed, 21 insertions(+), 15 deletions(-)
Title: Spatial Network Analysis
Description: Interface package for 'sala', the spatial network analysis library
from the 'depthmapX' software application. The R parts of the code are based
on the 'rdepthmap' package. Allows for the analysis of urban and
building-scale networks and provides metrics and methods usually found
within the Space Syntax domain. Methods in this package are described by K.
Al-Sayed, A. Turner, B. Hillier, S. Iida and A. Penn (2014) "Space Syntax
methodology", and also by A. Turner (2004)
<https://discovery.ucl.ac.uk/id/eprint/2651> "Depthmap 4: a researcher's
handbook".
Author: Petros Koutsolampros [cre, aut, cph]
,
Fani Kostourou [aut, ctb, cph]
,
Kimon Krenz [ctb, cph] ,
Alasdair Turner [ctb, cph] ,
Tasos Varoudis [ctb, cph] ,
Christian Sailer [ctb, cph] ,
Eva Friedrich [ctb, cph] ,
University College London [fnd],
Spacel [...truncated...]
Maintainer: Petros Koutsolampros <r-devel@pklampros.net>
Diff between alcyon versions 0.3.0 dated 2024-06-19 and 0.4.0 dated 2024-07-25
alcyon-0.3.0/alcyon/src/libs/genlib/linreg.h |only alcyon-0.3.0/alcyon/src/libs/salalib/agents/agentengine.cpp |only alcyon-0.3.0/alcyon/src/libs/salalib/agents/agentengine.h |only alcyon-0.3.0/alcyon/src/libs/salalib/agents/agenthelpers.h |only alcyon-0.3.0/alcyon/src/libs/salalib/agents/agentset.cpp |only alcyon-0.3.0/alcyon/src/libs/salalib/agents/agentset.h |only alcyon-0.3.0/alcyon/src/libs/salalib/mgraph.cpp |only alcyon-0.3.0/alcyon/src/libs/salalib/mgraph.h |only alcyon-0.3.0/alcyon/src/libs/salalib/options.h |only alcyon-0.3.0/alcyon/src/libs/salalib/pointdata.cpp |only alcyon-0.3.0/alcyon/src/libs/salalib/pointdata.h |only alcyon-0.3.0/alcyon/src/libs/salalib/spacepixfile.cpp |only alcyon-0.3.0/alcyon/src/libs/salalib/spacepixfile.h |only alcyon-0.4.0/alcyon/DESCRIPTION | 11 alcyon-0.4.0/alcyon/MD5 | 335 ++--- alcyon-0.4.0/alcyon/NAMESPACE | 1 alcyon-0.4.0/alcyon/NEWS.md | 5 alcyon-0.4.0/alcyon/R/RcppExports.R | 20 alcyon-0.4.0/alcyon/R/allFewestLineMap.R | 13 alcyon-0.4.0/alcyon/R/isovist.R | 4 alcyon-0.4.0/alcyon/R/oneToOneTraverse.R |only alcyon-0.4.0/alcyon/inst/WORDLIST | 1 alcyon-0.4.0/alcyon/inst/doc/segmentAnalysis.R | 13 alcyon-0.4.0/alcyon/inst/doc/segmentAnalysis.Rmd | 12 alcyon-0.4.0/alcyon/inst/doc/segmentAnalysis.html | 12 alcyon-0.4.0/alcyon/inst/doc/vga.R | 75 + alcyon-0.4.0/alcyon/inst/doc/vga.Rmd | 80 + alcyon-0.4.0/alcyon/inst/doc/vga.html | 70 + alcyon-0.4.0/alcyon/man/oneToOneTraverse.Rd |only alcyon-0.4.0/alcyon/src/AgentLookMode.h | 2 alcyon-0.4.0/alcyon/src/Makevars | 4 alcyon-0.4.0/alcyon/src/Makevars.win | 8 alcyon-0.4.0/alcyon/src/PointMap.h | 2 alcyon-0.4.0/alcyon/src/RcppExports.cpp | 83 + alcyon-0.4.0/alcyon/src/agentAnalysis.cpp | 87 - alcyon-0.4.0/alcyon/src/alcyon_types.h | 2 alcyon-0.4.0/alcyon/src/allFewest.cpp | 29 alcyon-0.4.0/alcyon/src/axialAnalysis.cpp | 5 alcyon-0.4.0/alcyon/src/isovist.cpp | 6 alcyon-0.4.0/alcyon/src/libs/genlib/CMakeLists.txt | 4 alcyon-0.4.0/alcyon/src/libs/genlib/bsptree.cpp | 45 alcyon-0.4.0/alcyon/src/libs/genlib/bsptree.h | 11 alcyon-0.4.0/alcyon/src/libs/genlib/comm.h | 2 alcyon-0.4.0/alcyon/src/libs/genlib/p2dpoly.cpp | 32 alcyon-0.4.0/alcyon/src/libs/genlib/p2dpoly.h | 22 alcyon-0.4.0/alcyon/src/libs/genlib/pafmath.cpp | 35 alcyon-0.4.0/alcyon/src/libs/genlib/pafmath.h | 109 - alcyon-0.4.0/alcyon/src/libs/genlib/readwritehelpers.h | 2 alcyon-0.4.0/alcyon/src/libs/genlib/simplematrix.h | 6 alcyon-0.4.0/alcyon/src/libs/salalib/CMakeLists.txt | 39 alcyon-0.4.0/alcyon/src/libs/salalib/agents/CMakeLists.txt | 20 alcyon-0.4.0/alcyon/src/libs/salalib/agents/agent.cpp | 49 alcyon-0.4.0/alcyon/src/libs/salalib/agents/agent.h | 4 alcyon-0.4.0/alcyon/src/libs/salalib/agents/agentanalysis.cpp |only alcyon-0.4.0/alcyon/src/libs/salalib/agents/agentanalysis.h |only alcyon-0.4.0/alcyon/src/libs/salalib/agents/agentga.cpp | 2 alcyon-0.4.0/alcyon/src/libs/salalib/agents/agentprogram.cpp | 18 alcyon-0.4.0/alcyon/src/libs/salalib/alllinemap.cpp | 182 +- alcyon-0.4.0/alcyon/src/libs/salalib/alllinemap.h | 36 alcyon-0.4.0/alcyon/src/libs/salalib/analysisresult.h | 19 alcyon-0.4.0/alcyon/src/libs/salalib/analysistype.h |only alcyon-0.4.0/alcyon/src/libs/salalib/attributemap.h |only alcyon-0.4.0/alcyon/src/libs/salalib/attributetable.cpp | 21 alcyon-0.4.0/alcyon/src/libs/salalib/attributetable.h | 20 alcyon-0.4.0/alcyon/src/libs/salalib/attributetablehelpers.h | 10 alcyon-0.4.0/alcyon/src/libs/salalib/axialminimiser.cpp | 4 alcyon-0.4.0/alcyon/src/libs/salalib/axialminimiser.h | 7 alcyon-0.4.0/alcyon/src/libs/salalib/axialmodules/axialintegration.cpp | 370 +++-- alcyon-0.4.0/alcyon/src/libs/salalib/axialmodules/axialintegration.h | 70 + alcyon-0.4.0/alcyon/src/libs/salalib/axialmodules/axiallocal.cpp | 12 alcyon-0.4.0/alcyon/src/libs/salalib/axialmodules/axiallocal.h | 6 alcyon-0.4.0/alcyon/src/libs/salalib/axialmodules/axialstepdepth.cpp | 10 alcyon-0.4.0/alcyon/src/libs/salalib/axialmodules/axialstepdepth.h | 10 alcyon-0.4.0/alcyon/src/libs/salalib/axialpolygons.cpp | 14 alcyon-0.4.0/alcyon/src/libs/salalib/bspnodetree.h |only alcyon-0.4.0/alcyon/src/libs/salalib/connector.cpp | 4 alcyon-0.4.0/alcyon/src/libs/salalib/connector.h | 2 alcyon-0.4.0/alcyon/src/libs/salalib/exportutils.cpp |only alcyon-0.4.0/alcyon/src/libs/salalib/exportutils.h |only alcyon-0.4.0/alcyon/src/libs/salalib/fileproperties.h | 4 alcyon-0.4.0/alcyon/src/libs/salalib/gridproperties.cpp | 2 alcyon-0.4.0/alcyon/src/libs/salalib/importtypedefs.h | 2 alcyon-0.4.0/alcyon/src/libs/salalib/importutils.cpp | 303 +++- alcyon-0.4.0/alcyon/src/libs/salalib/importutils.h | 10 alcyon-0.4.0/alcyon/src/libs/salalib/isegment.h | 8 alcyon-0.4.0/alcyon/src/libs/salalib/isovist.cpp | 2 alcyon-0.4.0/alcyon/src/libs/salalib/isovist.h | 1 alcyon-0.4.0/alcyon/src/libs/salalib/isovistutils.h |only alcyon-0.4.0/alcyon/src/libs/salalib/ivga.h | 2 alcyon-0.4.0/alcyon/src/libs/salalib/linkutils.h | 2 alcyon-0.4.0/alcyon/src/libs/salalib/mapconverter.cpp | 126 - alcyon-0.4.0/alcyon/src/libs/salalib/mapconverter.h | 19 alcyon-0.4.0/alcyon/src/libs/salalib/metagraph.h |only alcyon-0.4.0/alcyon/src/libs/salalib/metagraphreadwrite.cpp |only alcyon-0.4.0/alcyon/src/libs/salalib/metagraphreadwrite.h |only alcyon-0.4.0/alcyon/src/libs/salalib/ngraph.cpp | 2 alcyon-0.4.0/alcyon/src/libs/salalib/ngraph.h | 2 alcyon-0.4.0/alcyon/src/libs/salalib/pafcolor.cpp | 2 alcyon-0.4.0/alcyon/src/libs/salalib/parsers/dxfp.h | 16 alcyon-0.4.0/alcyon/src/libs/salalib/parsers/mapinfodata.cpp | 18 alcyon-0.4.0/alcyon/src/libs/salalib/parsers/mapinfodata.h | 2 alcyon-0.4.0/alcyon/src/libs/salalib/parsers/ntfp.h | 4 alcyon-0.4.0/alcyon/src/libs/salalib/pixelref.h | 5 alcyon-0.4.0/alcyon/src/libs/salalib/point.cpp | 2 alcyon-0.4.0/alcyon/src/libs/salalib/point.h | 14 alcyon-0.4.0/alcyon/src/libs/salalib/pointmap.cpp |only alcyon-0.4.0/alcyon/src/libs/salalib/pointmap.h |only alcyon-0.4.0/alcyon/src/libs/salalib/pushvalues.cpp |only alcyon-0.4.0/alcyon/src/libs/salalib/pushvalues.h |only alcyon-0.4.0/alcyon/src/libs/salalib/radiustype.h |only alcyon-0.4.0/alcyon/src/libs/salalib/resources/graph.hexpat | 99 + alcyon-0.4.0/alcyon/src/libs/salalib/salaedgeu.h |only alcyon-0.4.0/alcyon/src/libs/salalib/salaevent.h |only alcyon-0.4.0/alcyon/src/libs/salalib/salaprogram.cpp | 16 alcyon-0.4.0/alcyon/src/libs/salalib/salashape.cpp |only alcyon-0.4.0/alcyon/src/libs/salalib/salashape.h |only alcyon-0.4.0/alcyon/src/libs/salalib/segmmodules/segmangular.cpp | 20 alcyon-0.4.0/alcyon/src/libs/salalib/segmmodules/segmangular.h | 15 alcyon-0.4.0/alcyon/src/libs/salalib/segmmodules/segmmetric.cpp | 44 alcyon-0.4.0/alcyon/src/libs/salalib/segmmodules/segmmetric.h | 24 alcyon-0.4.0/alcyon/src/libs/salalib/segmmodules/segmmetricpd.cpp | 16 alcyon-0.4.0/alcyon/src/libs/salalib/segmmodules/segmmetricpd.h | 10 alcyon-0.4.0/alcyon/src/libs/salalib/segmmodules/segmmetricshortestpath.cpp | 30 alcyon-0.4.0/alcyon/src/libs/salalib/segmmodules/segmmetricshortestpath.h | 11 alcyon-0.4.0/alcyon/src/libs/salalib/segmmodules/segmtopological.cpp | 49 alcyon-0.4.0/alcyon/src/libs/salalib/segmmodules/segmtopological.h | 25 alcyon-0.4.0/alcyon/src/libs/salalib/segmmodules/segmtopologicalpd.cpp | 16 alcyon-0.4.0/alcyon/src/libs/salalib/segmmodules/segmtopologicalpd.h | 10 alcyon-0.4.0/alcyon/src/libs/salalib/segmmodules/segmtopologicalshortestpath.cpp | 30 alcyon-0.4.0/alcyon/src/libs/salalib/segmmodules/segmtopologicalshortestpath.h | 11 alcyon-0.4.0/alcyon/src/libs/salalib/segmmodules/segmtulip.cpp | 513 ++++--- alcyon-0.4.0/alcyon/src/libs/salalib/segmmodules/segmtulip.h | 84 + alcyon-0.4.0/alcyon/src/libs/salalib/segmmodules/segmtulipdepth.cpp | 13 alcyon-0.4.0/alcyon/src/libs/salalib/segmmodules/segmtulipdepth.h | 11 alcyon-0.4.0/alcyon/src/libs/salalib/segmmodules/segmtulipshortestpath.cpp | 36 alcyon-0.4.0/alcyon/src/libs/salalib/segmmodules/segmtulipshortestpath.h | 12 alcyon-0.4.0/alcyon/src/libs/salalib/shapegraph.cpp | 129 - alcyon-0.4.0/alcyon/src/libs/salalib/shapegraph.h | 33 alcyon-0.4.0/alcyon/src/libs/salalib/shapemap.cpp | 654 ++-------- alcyon-0.4.0/alcyon/src/libs/salalib/shapemap.h | 396 +----- alcyon-0.4.0/alcyon/src/libs/salalib/shapemapgroupdata.cpp |only alcyon-0.4.0/alcyon/src/libs/salalib/shapemapgroupdata.h |only alcyon-0.4.0/alcyon/src/libs/salalib/shaperef.h |only alcyon-0.4.0/alcyon/src/libs/salalib/spacepix.cpp | 100 - alcyon-0.4.0/alcyon/src/libs/salalib/sparksieve2.cpp | 2 alcyon-0.4.0/alcyon/src/libs/salalib/vgamodules/CMakeLists.txt | 27 alcyon-0.4.0/alcyon/src/libs/salalib/vgamodules/extractlinkdata.cpp |only alcyon-0.4.0/alcyon/src/libs/salalib/vgamodules/extractlinkdata.h |only alcyon-0.4.0/alcyon/src/libs/salalib/vgamodules/vgaangular.cpp | 38 alcyon-0.4.0/alcyon/src/libs/salalib/vgamodules/vgaangular.h | 24 alcyon-0.4.0/alcyon/src/libs/salalib/vgamodules/vgaangulardepth.cpp | 14 alcyon-0.4.0/alcyon/src/libs/salalib/vgamodules/vgaangulardepth.h | 12 alcyon-0.4.0/alcyon/src/libs/salalib/vgamodules/vgaangularopenmp.cpp |only alcyon-0.4.0/alcyon/src/libs/salalib/vgamodules/vgaangularopenmp.h |only alcyon-0.4.0/alcyon/src/libs/salalib/vgamodules/vgaangularshortestpath.cpp |only alcyon-0.4.0/alcyon/src/libs/salalib/vgamodules/vgaangularshortestpath.h |only alcyon-0.4.0/alcyon/src/libs/salalib/vgamodules/vgaisovist.cpp | 61 alcyon-0.4.0/alcyon/src/libs/salalib/vgamodules/vgaisovist.h | 16 alcyon-0.4.0/alcyon/src/libs/salalib/vgamodules/vgaisovistzone.cpp |only alcyon-0.4.0/alcyon/src/libs/salalib/vgamodules/vgaisovistzone.h |only alcyon-0.4.0/alcyon/src/libs/salalib/vgamodules/vgametric.cpp | 41 alcyon-0.4.0/alcyon/src/libs/salalib/vgamodules/vgametric.h | 25 alcyon-0.4.0/alcyon/src/libs/salalib/vgamodules/vgametricdepth.cpp | 30 alcyon-0.4.0/alcyon/src/libs/salalib/vgamodules/vgametricdepth.h | 14 alcyon-0.4.0/alcyon/src/libs/salalib/vgamodules/vgametricdepthlinkcost.cpp |only alcyon-0.4.0/alcyon/src/libs/salalib/vgamodules/vgametricdepthlinkcost.h |only alcyon-0.4.0/alcyon/src/libs/salalib/vgamodules/vgametricopenmp.cpp |only alcyon-0.4.0/alcyon/src/libs/salalib/vgamodules/vgametricopenmp.h |only alcyon-0.4.0/alcyon/src/libs/salalib/vgamodules/vgametricshortestpath.cpp |only alcyon-0.4.0/alcyon/src/libs/salalib/vgamodules/vgametricshortestpath.h |only alcyon-0.4.0/alcyon/src/libs/salalib/vgamodules/vgametricshortestpathtomany.cpp |only alcyon-0.4.0/alcyon/src/libs/salalib/vgamodules/vgametricshortestpathtomany.h |only alcyon-0.4.0/alcyon/src/libs/salalib/vgamodules/vgathroughvision.cpp | 22 alcyon-0.4.0/alcyon/src/libs/salalib/vgamodules/vgathroughvision.h | 8 alcyon-0.4.0/alcyon/src/libs/salalib/vgamodules/vgavisualglobal.cpp | 30 alcyon-0.4.0/alcyon/src/libs/salalib/vgamodules/vgavisualglobal.h | 21 alcyon-0.4.0/alcyon/src/libs/salalib/vgamodules/vgavisualglobaldepth.cpp | 12 alcyon-0.4.0/alcyon/src/libs/salalib/vgamodules/vgavisualglobaldepth.h | 12 alcyon-0.4.0/alcyon/src/libs/salalib/vgamodules/vgavisualglobalopenmp.cpp |only alcyon-0.4.0/alcyon/src/libs/salalib/vgamodules/vgavisualglobalopenmp.h |only alcyon-0.4.0/alcyon/src/libs/salalib/vgamodules/vgavisuallocal.cpp | 23 alcyon-0.4.0/alcyon/src/libs/salalib/vgamodules/vgavisuallocal.h | 10 alcyon-0.4.0/alcyon/src/libs/salalib/vgamodules/vgavisuallocaladjmatrix.cpp |only alcyon-0.4.0/alcyon/src/libs/salalib/vgamodules/vgavisuallocaladjmatrix.h |only alcyon-0.4.0/alcyon/src/libs/salalib/vgamodules/vgavisuallocalopenmp.cpp |only alcyon-0.4.0/alcyon/src/libs/salalib/vgamodules/vgavisuallocalopenmp.h |only alcyon-0.4.0/alcyon/src/libs/salalib/vgamodules/vgavisualshortestpath.cpp |only alcyon-0.4.0/alcyon/src/libs/salalib/vgamodules/vgavisualshortestpath.h |only alcyon-0.4.0/alcyon/src/link.cpp | 12 alcyon-0.4.0/alcyon/src/metagraphdata.cpp | 37 alcyon-0.4.0/alcyon/src/segmentAnalysis.cpp | 152 -- alcyon-0.4.0/alcyon/src/segmentDepth.cpp |only alcyon-0.4.0/alcyon/src/segmentShortestPath.cpp |only alcyon-0.4.0/alcyon/src/vga.cpp | 108 - alcyon-0.4.0/alcyon/src/vgaDepth.cpp |only alcyon-0.4.0/alcyon/src/vgaShortestPath.cpp |only alcyon-0.4.0/alcyon/tests/testthat/test-allLineMap.R | 9 alcyon-0.4.0/alcyon/tests/testthat/test-axialAnalysis.R | 12 alcyon-0.4.0/alcyon/tests/testthat/test-vga.R | 544 +++----- alcyon-0.4.0/alcyon/tests/testthat/test-vgaCpp.R |only alcyon-0.4.0/alcyon/vignettes/segmentAnalysis.Rmd | 12 alcyon-0.4.0/alcyon/vignettes/vga.Rmd | 80 + 202 files changed, 3257 insertions(+), 3183 deletions(-)
Title: Methods to Analyse Seasonal Radial Tree Growth Data
Description: Methods for comparing different regression algorithms for
describing the temporal dynamics of secondary tree growth (xylem and
phloem). Users can compare the accuracy of the most common fitting methods
usually used to analyse xylem and phloem data, i.e., Gompertz function,
Double Gompertz function, General Additive Models (GAMs); and an algorithm
newly introduced to the field, i.e., Bayesian Regularised Neural Networks
(brnn). The core function of the package is XPSgrowth(), while the results
can be interpreted using implemented generic S3 methods, such as plot() and
summary().
Author: Jernej Jevsenak [aut, cre]
Maintainer: Jernej Jevsenak <jernej.jevsenak@gmail.com>
Diff between rTG versions 1.0.2 dated 2024-02-03 and 1.0.3 dated 2024-07-25
DESCRIPTION | 6 - MD5 | 12 +- NAMESPACE | 2 NEWS.md | 5 + R/XPSgrowth.R | 178 ++++++++++++++++++++++++++++++++++++++---- man/XPSgrowth.Rd | 34 +++++--- tests/testthat/test_general.R | 5 - 7 files changed, 205 insertions(+), 37 deletions(-)
Title: Fast Unified Random Forests for Survival, Regression, and
Classification (RF-SRC)
Description: Fast OpenMP parallel computing of Breiman's random forests for univariate, multivariate, unsupervised, survival, competing risks, class imbalanced classification and quantile regression. New Mahalanobis splitting for correlated outcomes. Extreme random forests and randomized splitting. Suite of imputation methods for missing data. Fast random forests using subsampling. Confidence regions and standard errors for variable importance. New improved holdout importance. Case-specific importance. Minimal depth variable importance. Visualize trees on your Safari or Google Chrome browser. Anonymous random forests for data privacy.
Author: Hemant Ishwaran <hemant.ishwaran@gmail.com>, Udaya B. Kogalur <ubk@kogalur.com>
Maintainer: Udaya B. Kogalur <ubk@kogalur.com>
Diff between randomForestSRC versions 3.3.0 dated 2024-06-25 and 3.3.1 dated 2024-07-25
DESCRIPTION | 10 +++++----- MD5 | 28 ++++++++++++++-------------- NAMESPACE | 1 + R/generic.predict.rfsrc.R | 5 ++--- R/plot.quantreg.rfsrc.R | 11 +++++++++-- R/predict.rfsrc.R | 2 ++ R/rfsrc.R | 8 +++----- R/utilities.R | 8 -------- configure | 18 +++++++++--------- configure.ac | 2 +- inst/NEWS | 12 +++++++++--- man/plot.quantreg.rfsrc.Rd | 4 +++- man/predict.rfsrc.Rd | 7 ++++++- man/rfsrc.Rd | 5 +++++ src/randomForestSRC.c | 3 +++ 15 files changed, 72 insertions(+), 52 deletions(-)
More information about randomForestSRC at CRAN
Permanent link
Title: Create, Modify and Analyse Phylogenetic Trees
Description: Efficient implementations of functions for the creation,
modification and analysis of phylogenetic trees.
Applications include:
generation of trees with specified shapes;
tree rearrangement;
analysis of tree shape;
rooting of trees and extraction of subtrees;
calculation and depiction of split support;
plotting the position of rogue taxa (Klopfstein & Spasojevic 2019)
<doi:10.1371/journal.pone.0212942>;
calculation of ancestor-descendant relationships,
of 'stemwardness' (Asher & Smith, 2022) <doi:10.1093/sysbio/syab072>,
and of tree balance (Mir et al. 2013, Lemant et al. 2022)
<doi:10.1016/j.mbs.2012.10.005>, <doi:10.1093/sysbio/syac027>;
artificial extinction (Asher & Smith, 2022) <doi:10.1093/sysbio/syab072>;
import and export of trees from Newick, Nexus (Maddison et al. 1997)
<doi:10.1093/sysbio/46.4.590>,
and TNT <https://www.lillo.org.ar/phylogeny/tnt/> formats;
and analysis of splits and cladistic information.
Author: Martin R. Smith [aut, cre, cph]
,
Emmanuel Paradis [cph] ,
Robert Noble [cph]
Maintainer: Martin R. Smith <martin.smith@durham.ac.uk>
Diff between TreeTools versions 1.11.1 dated 2024-06-07 and 1.12.0 dated 2024-07-25
DESCRIPTION | 19 MD5 | 94 +- NAMESPACE | 944 +++++++++++++------------ NEWS.md | 18 R/AddTip.R | 4 R/RUtreebalance.R |only R/SplitFunctions.R | 2 R/TopologyOnly.R |only R/TotalCopheneticIndex.R | 17 R/TreeNumber.R | 4 R/helper_functions.R | 2 R/parse_files.R | 7 R/phylo.R | 11 R/tree_generation.R | 1057 ++++++++++++++--------------- R/tree_shape.R | 2 build/partial.rdb |binary build/vignette.rds |binary inst/REFERENCES.bib | 12 inst/WORDLIST | 4 inst/doc/filesystem-navigation.html | 4 inst/doc/load-data.html | 4 inst/doc/load-trees.html | 10 inst/include/TreeTools/root_tree.h | 14 man/AddTip.Rd | 4 man/AncestorEdge.Rd | 6 man/CladisticInfo.Rd | 1 man/Consensus.Rd | 1 man/DescendantEdges.Rd | 6 man/EdgeAncestry.Rd | 6 man/J1Index.Rd |only man/ListAncestors.Rd | 6 man/Neworder.Rd | 6 man/ReadCharacters.Rd | 3 man/Reorder.Rd | 6 man/Stemwardness.Rd | 1 man/Subtree.Rd | 6 man/TipLabels.Rd | 2 man/TopologyOnly.Rd |only man/TotalCopheneticIndex.Rd | 11 man/TreeShape.Rd | 2 man/TreeTools-package.Rd | 1 man/figures/Stemwardness.png |binary man/sapply64.Rd | 2 src/ape_reorder.cpp | 1 tests/testthat/test-RUtreebalance.R |only tests/testthat/test-TopologyOnly.R |only tests/testthat/test-TotalCopheneticIndex.R | 20 tests/testthat/test-phylo.R | 11 tests/testthat/test-root_tree.h.R | 13 tests/testthat/test-tree_generation.R | 12 tests/testthat/test-tree_properties.R | 2 51 files changed, 1256 insertions(+), 1102 deletions(-)
Title: Perform Structural Missing Data Investigations
Description: An easy to use implementation of routine structural missing data diagnostics with functions to visualize the proportions of missing observations, investigate missing data patterns and conduct various empirical missing data diagnostic tests. Reference: Weberpals J, Raman SR, Shaw PA, Lee H, Hammill BG, Toh S, Connolly JG, Dandreo KJ, Tian F, Liu W, Li J, Hernández-Muñoz JJ, Glynn RJ, Desai RJ. smdi: an R package to perform structural missing data investigations on partially observed confounders in real-world evidence studies. JAMIA Open. 2024 Jan 31;7(1):ooae008. <doi:10.1093/jamiaopen/ooae008>.
Author: Janick Weberpals [aut, cre, cph]
Maintainer: Janick Weberpals <janick.developer@gmail.com>
Diff between smdi versions 0.2.2 dated 2023-07-17 and 0.3.0 dated 2024-07-25
DESCRIPTION | 27 MD5 | 95 - NAMESPACE | 16 NEWS.md | 18 R/smdi_asmd.R | 12 R/smdi_check_covar.R | 14 R/smdi_diagnose.R | 8 R/smdi_hotelling.R | 34 R/smdi_little.R | 32 R/smdi_na_indicator.R | 6 R/smdi_outcome.R | 49 R/smdi_rf.R | 66 + R/smdi_style_gt.R | 16 R/smdi_summarize.R | 4 build/partial.rdb |only build/vignette.rds |binary data/smdi_data.rda |binary data/smdi_data_complete.rda |binary inst/doc/a_data_generation.R | 137 +- inst/doc/a_data_generation.Rmd | 109 +- inst/doc/a_data_generation.html | 1434 ++++++++++++++++------------ inst/doc/b_routine_diagnostics.R | 26 inst/doc/b_routine_diagnostics.Rmd | 18 inst/doc/b_routine_diagnostics.html | 135 +- inst/doc/c_multivariate_missingness.R | 13 inst/doc/c_multivariate_missingness.Rmd | 5 inst/doc/c_multivariate_missingness.html | 632 +++++++----- inst/doc/d_narfcs_sensitivity_analysis.R | 56 - inst/doc/d_narfcs_sensitivity_analysis.Rmd | 48 inst/doc/d_narfcs_sensitivity_analysis.html | 144 +- inst/doc/smdi.R | 2 inst/doc/smdi.html | 89 + man/smdi-package.Rd | 4 man/smdi_asmd.Rd | 2 man/smdi_diagnose.Rd | 8 man/smdi_hotelling.Rd | 9 man/smdi_little.Rd | 2 man/smdi_outcome.Rd | 15 man/smdi_rf.Rd | 8 man/smdi_style_gt.Rd | 2 tests/testthat/test-smdi_asmd.R | 4 tests/testthat/test-smdi_hotelling.R | 4 tests/testthat/test-smdi_little.R | 12 tests/testthat/test-smdi_outcome.R | 83 + tests/testthat/test-smdi_rf.R | 19 vignettes/a_data_generation.Rmd | 109 +- vignettes/b_routine_diagnostics.Rmd | 18 vignettes/c_multivariate_missingness.Rmd | 5 vignettes/d_narfcs_sensitivity_analysis.Rmd | 48 49 files changed, 2161 insertions(+), 1436 deletions(-)
Title: R Analyzer for Large-Scale Assessments
Description: Prepare and analyze data from large-scale assessments and surveys with
complex sampling and assessment design (see 'Rutkowski', 2010
<doi:10.3102/0013189X10363170>). Such studies are, for example,
international assessments like 'TIMSS', 'PIRLS' and 'PISA'. A graphical
interface is available for the non-technical user.The package includes
functions to covert the original data from 'SPSS' into 'R' data sets
keeping the user-defined missing values, merge data from different
respondents and/or countries, generate variable dictionaries, modify
data, produce descriptive statistics (percentages, means, percentiles,
benchmarks) and multivariate statistics (correlations, linear
regression, binary logistic regression). The number of supported
studies and analysis types will increase in future. For a general
presentation of the package, see 'Mirazchiyski', 2021a
(<doi:10.1186/s40536-021-00114-4>). For detailed technical aspects of the
package, see 'Mirazchiyski', 2021b (<doi:10.339 [...truncated...]
Author: Plamen V. Mirazchiyski [aut, cre],
INERI [aut]
Maintainer: Plamen V. Mirazchiyski <plamen.mirazchiyski@ineri.org>
Diff between RALSA versions 1.4.5 dated 2024-04-26 and 1.4.7 dated 2024-07-25
DESCRIPTION | 10 MD5 | 42 NEWS.md | 20 R/common.r | 203 R/lsa.bench.r | 3 R/lsa.bin.log.reg.r | 7 R/lsa.convert.data.r | 9 R/lsa.corr.r | 3 R/lsa.crosstabs.r | 6 R/lsa.lin.reg.r | 83 R/lsa.pcts.means.r | 3 R/lsa.prctls.r | 3 README.md | 2 inst/shiny/GUI/server.r |18110 ++++++++++++++++++++++++------------------------ inst/shiny/GUI/ui.r | 3 man/lsa.bench.Rd | 1 man/lsa.bin.log.reg.Rd | 5 man/lsa.corr.Rd | 1 man/lsa.crosstabs.Rd | 4 man/lsa.lin.reg.Rd | 21 man/lsa.pcts.means.Rd | 1 man/lsa.prctls.Rd | 1 22 files changed, 9425 insertions(+), 9116 deletions(-)
Title: Concise Spatial Query and Representation System (c-Squares)
Description: Encode and decode c-squares, from and to simple feature (sf)
or spatiotemporal arrays (stars) objects. Use c-squares codes to quickly
join or query spatial data.
Author: Pepijn de Vries [aut, cre]
Maintainer: Pepijn de Vries <pepijn.devries@outlook.com>
Diff between csquares versions 0.0.6 dated 2024-07-19 and 0.0.7 dated 2024-07-25
csquares-0.0.6/csquares/inst/doc/Wildcards.R |only csquares-0.0.6/csquares/inst/doc/Wildcards.Rmd |only csquares-0.0.6/csquares/inst/doc/Wildcards.html |only csquares-0.0.6/csquares/vignettes/Wildcards.Rmd |only csquares-0.0.7/csquares/DESCRIPTION | 15 +- csquares-0.0.7/csquares/MD5 | 75 ++++++---- csquares-0.0.7/csquares/NAMESPACE | 15 ++ csquares-0.0.7/csquares/NEWS.md | 14 + csquares-0.0.7/csquares/R/as_csquares.R | 14 + csquares-0.0.7/csquares/R/as_stars.R | 4 csquares-0.0.7/csquares/R/csquares_methods.R | 61 +++++--- csquares-0.0.7/csquares/R/expand.R | 2 csquares-0.0.7/csquares/R/helpers.R | 1 csquares-0.0.7/csquares/R/ices.R |only csquares-0.0.7/csquares/R/in.R | 2 csquares-0.0.7/csquares/R/init.R | 18 ++ csquares-0.0.7/csquares/R/joins_tidy.R |only csquares-0.0.7/csquares/R/resample.R | 4 csquares-0.0.7/csquares/R/tidyverse.R | 43 +++++ csquares-0.0.7/csquares/R/validate.R | 5 csquares-0.0.7/csquares/R/vctrs.R |only csquares-0.0.7/csquares/build/vignette.rds |binary csquares-0.0.7/csquares/inst/doc/csquares-objects.R |only csquares-0.0.7/csquares/inst/doc/csquares-objects.Rmd |only csquares-0.0.7/csquares/inst/doc/csquares-objects.html |only csquares-0.0.7/csquares/inst/doc/ices.R |only csquares-0.0.7/csquares/inst/doc/ices.Rmd |only csquares-0.0.7/csquares/inst/doc/ices.html |only csquares-0.0.7/csquares/inst/doc/tidy.R |only csquares-0.0.7/csquares/inst/doc/tidy.Rmd |only csquares-0.0.7/csquares/inst/doc/tidy.html |only csquares-0.0.7/csquares/inst/doc/wildcards.R |only csquares-0.0.7/csquares/inst/doc/wildcards.Rmd |only csquares-0.0.7/csquares/inst/doc/wildcards.html |only csquares-0.0.7/csquares/man/as_csquares.Rd | 3 csquares-0.0.7/csquares/man/csquares-methods.Rd | 8 - csquares-0.0.7/csquares/man/expand_wildcards.Rd | 2 csquares-0.0.7/csquares/man/figures/lifecycle-archived.svg |only csquares-0.0.7/csquares/man/figures/lifecycle-defunct.svg |only csquares-0.0.7/csquares/man/figures/lifecycle-deprecated.svg |only csquares-0.0.7/csquares/man/figures/lifecycle-experimental.svg |only csquares-0.0.7/csquares/man/figures/lifecycle-maturing.svg |only csquares-0.0.7/csquares/man/figures/lifecycle-questioning.svg |only csquares-0.0.7/csquares/man/figures/lifecycle-soft-deprecated.svg |only csquares-0.0.7/csquares/man/figures/lifecycle-stable.svg |only csquares-0.0.7/csquares/man/figures/lifecycle-superseded.svg |only csquares-0.0.7/csquares/man/ices_columns.Rd |only csquares-0.0.7/csquares/man/ices_geom.Rd |only csquares-0.0.7/csquares/man/in_csquares.Rd | 2 csquares-0.0.7/csquares/man/tidyjoins.Rd |only csquares-0.0.7/csquares/man/tidyverse.Rd | 10 - csquares-0.0.7/csquares/man/vctrs.Rd |only csquares-0.0.7/csquares/tests/testthat/test-ices.R |only csquares-0.0.7/csquares/vignettes/csquares-objects.Rmd |only csquares-0.0.7/csquares/vignettes/ices.Rmd |only csquares-0.0.7/csquares/vignettes/tidy.Rmd |only csquares-0.0.7/csquares/vignettes/wildcards.Rmd |only 57 files changed, 227 insertions(+), 71 deletions(-)
Title: Workflow for Cluster Randomised Trials with Spillover
Description: Design, workflow and statistical analysis of Cluster Randomised Trials of (health) interventions where there may be spillover between the arms (see <https://thomasasmith.github.io/index.html>).
Author: Thomas Smith [aut, cre, cph] ,
Lea Multerer [ctb],
Mariah Silkey [ctb]
Maintainer: Thomas Smith <Thomas-a.Smith@unibas.ch>
Diff between CRTspat versions 1.2.0 dated 2024-02-12 and 1.3.0 dated 2024-07-25
CRTspat-1.2.0/CRTspat/tests/testthat/test3..R |only CRTspat-1.3.0/CRTspat/DESCRIPTION | 8 CRTspat-1.3.0/CRTspat/MD5 | 102 CRTspat-1.3.0/CRTspat/NAMESPACE | 1 CRTspat-1.3.0/CRTspat/NEWS.md | 5 CRTspat-1.3.0/CRTspat/R/CRTsp.R | 129 CRTspat-1.3.0/CRTspat/R/CRTspat-package.R | 1 CRTspat-1.3.0/CRTspat/R/analyseCRT.R | 9 CRTspat-1.3.0/CRTspat/R/designCRT.R | 167 CRTspat-1.3.0/CRTspat/R/simulateCRT.R | 43 CRTspat-1.3.0/CRTspat/R/surround.R | 188 CRTspat-1.3.0/CRTspat/R/utils.R | 90 CRTspat-1.3.0/CRTspat/inst/doc/Usecase1.Rmd | 107 CRTspat-1.3.0/CRTspat/inst/doc/Usecase1.html | 105 CRTspat-1.3.0/CRTspat/inst/doc/Usecase2.Rmd | 152 CRTspat-1.3.0/CRTspat/inst/doc/Usecase2.html | 163 CRTspat-1.3.0/CRTspat/inst/doc/Usecase3.Rmd | 18 CRTspat-1.3.0/CRTspat/inst/doc/Usecase3.html | 16 CRTspat-1.3.0/CRTspat/inst/doc/Usecase4.Rmd | 18 CRTspat-1.3.0/CRTspat/inst/doc/Usecase4.html | 2 CRTspat-1.3.0/CRTspat/inst/doc/Usecase5.Rmd | 46 CRTspat-1.3.0/CRTspat/inst/doc/Usecase5.html | 39 CRTspat-1.3.0/CRTspat/inst/doc/Usecase6.Rmd | 16 CRTspat-1.3.0/CRTspat/inst/doc/Usecase6.html | 4 CRTspat-1.3.0/CRTspat/inst/doc/Usecase7.Rmd | 32 CRTspat-1.3.0/CRTspat/inst/doc/Usecase7.html | 24 CRTspat-1.3.0/CRTspat/inst/doc/Usecase8.Rmd | 24 CRTspat-1.3.0/CRTspat/inst/doc/Usecase8.html | 18 CRTspat-1.3.0/CRTspat/inst/extdata/exampleCRT.txt | 3711 +++++++++--------- CRTspat-1.3.0/CRTspat/inst/extdata/example_design.txt | 10 CRTspat-1.3.0/CRTspat/man/CRTpower.Rd | 52 CRTspat-1.3.0/CRTspat/man/CRTsp.Rd | 16 CRTspat-1.3.0/CRTspat/man/CRTspat-package.Rd | 42 CRTspat-1.3.0/CRTspat/man/compute_distance.Rd | 18 CRTspat-1.3.0/CRTspat/man/compute_mesh.Rd | 2 CRTspat-1.3.0/CRTspat/man/figures/manual.pdf |binary CRTspat-1.3.0/CRTspat/man/plotCRT.Rd | 260 - CRTspat-1.3.0/CRTspat/man/randomizeCRT.Rd | 6 CRTspat-1.3.0/CRTspat/man/simulateCRT.Rd | 292 - CRTspat-1.3.0/CRTspat/man/specify_clusters.Rd | 18 CRTspat-1.3.0/CRTspat/tests/testthat/test3.R |only CRTspat-1.3.0/CRTspat/tests/testthat/test9.R | 6 CRTspat-1.3.0/CRTspat/vignettes/Usecase1.Rmd | 107 CRTspat-1.3.0/CRTspat/vignettes/Usecase2.Rmd | 152 CRTspat-1.3.0/CRTspat/vignettes/Usecase2.Rmd.orig | 8 CRTspat-1.3.0/CRTspat/vignettes/Usecase3.Rmd | 18 CRTspat-1.3.0/CRTspat/vignettes/Usecase4.Rmd | 18 CRTspat-1.3.0/CRTspat/vignettes/Usecase5.Rmd | 46 CRTspat-1.3.0/CRTspat/vignettes/Usecase6.Rmd | 16 CRTspat-1.3.0/CRTspat/vignettes/Usecase7.Rmd | 32 CRTspat-1.3.0/CRTspat/vignettes/Usecase7.Rmd.orig | 22 CRTspat-1.3.0/CRTspat/vignettes/Usecase8.Rmd | 24 CRTspat-1.3.0/CRTspat/vignettes/Usecase8.Rmd.orig | 16 53 files changed, 3406 insertions(+), 3013 deletions(-)
Title: Analyze Interconnection Structure of Multilayer Interaction
Networks
Description: In view of the analysis of the structural characteristics of the multilayer network has been complete, however, there is still a lack of a unified operation that can quickly obtain the corresponding characteristics of the multilayer network.
To solve this insufficiency, 'ILSM' was designed for supporting calculating such metrics of multilayer networks by functions of this R package.
Author: WeiCheng Sun [aut, cre],
Chuan Yan [aut],
Yangyang Zhao [aut]
Maintainer: WeiCheng Sun <sunwch2023@lzu.edu.cn>
Diff between ILSM versions 1.0.2 dated 2024-04-07 and 1.0.3.1 dated 2024-07-25
ILSM-1.0.2/ILSM/R/Hc.R |only ILSM-1.0.2/ILSM/R/Node_versatility.R |only ILSM-1.0.2/ILSM/R/Prc.R |only ILSM-1.0.2/ILSM/R/Psc.R |only ILSM-1.0.2/ILSM/R/motif_count.R |only ILSM-1.0.2/ILSM/R/role.R |only ILSM-1.0.2/ILSM/man/Hc.Rd |only ILSM-1.0.2/ILSM/man/Midlayer_role.Rd |only ILSM-1.0.2/ILSM/man/Node_versatility.Rd |only ILSM-1.0.2/ILSM/man/Prc.Rd |only ILSM-1.0.2/ILSM/man/Psc.Rd |only ILSM-1.0.2/ILSM/man/figure/conbine_1.png |only ILSM-1.0.2/ILSM/man/figure/example.png |only ILSM-1.0.2/ILSM/man/figure/motif_motify.png |only ILSM-1.0.2/ILSM/man/motif_count.Rd |only ILSM-1.0.2/ILSM/tests/testthat/test-Midlayer_role.R |only ILSM-1.0.2/ILSM/tests/testthat/test-Node_versatility.R |only ILSM-1.0.2/ILSM/tests/testthat/test-motif_count.R |only ILSM-1.0.3.1/ILSM/DESCRIPTION | 11 ILSM-1.0.3.1/ILSM/MD5 | 90 +++--- ILSM-1.0.3.1/ILSM/NAMESPACE | 14 - ILSM-1.0.3.1/ILSM/NEWS.md | 36 ++ ILSM-1.0.3.1/ILSM/R/Multi_motif.R | 110 ++++++-- ILSM-1.0.3.1/ILSM/R/build_net.R | 2 ILSM-1.0.3.1/ILSM/R/coid.R |only ILSM-1.0.3.1/ILSM/R/cois.R |only ILSM-1.0.3.1/ILSM/R/edgelist_from_matrices.R | 51 +-- ILSM-1.0.3.1/ILSM/R/hc.R |only ILSM-1.0.3.1/ILSM/R/icmotif_count.R |only ILSM-1.0.3.1/ILSM/R/icmotif_role.R |only ILSM-1.0.3.1/ILSM/R/igraph_from_matrices.R | 58 +--- ILSM-1.0.3.1/ILSM/R/node_cv.R |only ILSM-1.0.3.1/ILSM/R/null_model.R | 6 ILSM-1.0.3.1/ILSM/R/pc.R |only ILSM-1.0.3.1/ILSM/R/poc.R |only ILSM-1.0.3.1/ILSM/R/role_sim.R | 8 ILSM-1.0.3.1/ILSM/R/subnet_cor.R | 100 ++----- ILSM-1.0.3.1/ILSM/README.md | 63 ++-- ILSM-1.0.3.1/ILSM/build/vignette.rds |binary ILSM-1.0.3.1/ILSM/inst/doc/motif_guideline.R | 23 + ILSM-1.0.3.1/ILSM/inst/doc/motif_guideline.Rmd | 32 +- ILSM-1.0.3.1/ILSM/inst/doc/motif_guideline.html | 149 ++++++++++- ILSM-1.0.3.1/ILSM/man/Multi_motif.Rd | 36 +- ILSM-1.0.3.1/ILSM/man/build_net.Rd | 2 ILSM-1.0.3.1/ILSM/man/coid.Rd |only ILSM-1.0.3.1/ILSM/man/cois.Rd |only ILSM-1.0.3.1/ILSM/man/figure/conbine.png |only ILSM-1.0.3.1/ILSM/man/figure/motif_ILSM.png |only ILSM-1.0.3.1/ILSM/man/figure/motif_ILSM.tif |only ILSM-1.0.3.1/ILSM/man/hc.Rd |only ILSM-1.0.3.1/ILSM/man/icmotif_count.Rd |only ILSM-1.0.3.1/ILSM/man/icmotif_role.Rd |only ILSM-1.0.3.1/ILSM/man/igraph_from_matrices.Rd | 4 ILSM-1.0.3.1/ILSM/man/node_cv.Rd |only ILSM-1.0.3.1/ILSM/man/null_model.Rd | 6 ILSM-1.0.3.1/ILSM/man/pc.Rd |only ILSM-1.0.3.1/ILSM/man/poc.Rd |only ILSM-1.0.3.1/ILSM/man/role_sim.Rd | 8 ILSM-1.0.3.1/ILSM/man/subnet_cor.Rd | 2 ILSM-1.0.3.1/ILSM/tests/testthat/test-Multi_motif.R | 18 - ILSM-1.0.3.1/ILSM/tests/testthat/test-adject_net.R | 2 ILSM-1.0.3.1/ILSM/tests/testthat/test-icmotif_count.R |only ILSM-1.0.3.1/ILSM/tests/testthat/test-icmotif_role.R |only ILSM-1.0.3.1/ILSM/tests/testthat/test-igraph_from_matrices.R | 12 ILSM-1.0.3.1/ILSM/tests/testthat/test-node_cv.R |only ILSM-1.0.3.1/ILSM/vignettes/motif_guideline.Rmd | 32 +- 66 files changed, 570 insertions(+), 305 deletions(-)
Title: Analyzing Animal's Rhythmicity
Description: Analyze and visualize the rhythmic behavior of animals using the
degree of functional coupling (See Scheibe (1999) <doi:10.1076/brhm.30.2.216.1420>),
compute and visualize harmonic power, actograms, average activity and diurnality
index.
Author: Hassan-Roland Nasser [aut, cre],
Marie Schneider [aut, ctb],
Joanna Stachowicz [aut, rev],
Christina Umstaetter [aut, ths]
Maintainer: Hassan-Roland Nasser <hassan.nasser@me.com>
Diff between digiRhythm versions 2.0 dated 2024-07-16 and 2.1 dated 2024-07-25
DESCRIPTION | 6 MD5 | 55 - R/actogram.R | 16 R/daily_acticity_wrap_plot.R | 15 R/daily_average_activity.R | 13 R/data.R | 3 R/dfc.R | 64 -- R/diurnality.R | 22 R/import_raw_activity_data.R | 40 + R/is_dgm_friendly.R | 31 - R/lomb_scargle_periodogram.R | 118 ++-- R/resample_dgm.R | 11 R/sliding_DI.R | 41 - R/utils.R | 24 inst/doc/Actgram_diurnality_avg_activity.html | 4 inst/doc/DFC_and_HP_and_changing_plots.html | 380 +++++++------ inst/doc/Loading_and_preprocessing_data_in_DigiRhythm.html | 20 inst/doc/Visualisation.html | 4 man/actogram.Rd | 3 man/daily_average_activity.Rd | 4 man/dfc.Rd | 17 man/diurnality.Rd | 11 man/import_raw_activity_data.Rd | 11 man/is_dgm_friendly.Rd | 6 man/lomb_scargle_periodogram.Rd | 42 - man/lowest_possible_harmonic_period.Rd |only man/resample_dgm.Rd | 8 man/sliding_DI.Rd | 3 man/timedata.Rd | 3 29 files changed, 595 insertions(+), 380 deletions(-)
Title: Calibration, Validation, and Simulation of TKTD Models
Description: Eases the use of ecotoxicological effect models. Can simulate
common toxicokinetic-toxicodynamic (TK/TD) models such as
General Unified Threshold models of Survival (GUTS) and Lemna. It can
derive effects and effect profiles (EPx) from scenarios. It supports the
use of 'tidyr' workflows employing the pipe symbol. Time-consuming
tasks can be parallelized.
Author: Nils Kehrein [aut, cre],
Dirk Nickisch [aut],
Peter Vermeiren [aut],
Torben Wittwer [ctb],
Johannes Witt [ctb],
Andre Gergs [ctb]
Maintainer: Nils Kehrein <nils.kehrein@gmail.com>
Diff between cvasi versions 1.1.0 dated 2024-05-30 and 1.1.3 dated 2024-07-25
DESCRIPTION | 8 MD5 | 72 ++-- NAMESPACE | 225 +++++++------- NEWS.md | 15 R/class-Algae.R | 61 ++- R/data.R | 26 + R/globals.R | 6 R/import_toxswa.R | 11 R/plotting.r | 429 ++++++++++++++++++---------- R/simulate.R | 20 + R/solver.R | 22 - inst/doc/cvasi-1-manual.R | 2 inst/doc/cvasi-1-manual.Rmd | 2 inst/doc/cvasi-2-howto.html | 8 man/Algae_Simple.Rd | 25 + man/Algae_TKTD.Rd | 28 + man/Algae_Weber.Rd | 14 man/CalibrationSet.Rd | 140 ++++----- man/effect.Rd | 132 ++++---- man/epx.Rd | 182 +++++------ man/minnow_it.Rd | 13 man/minnow_sd.Rd | 13 man/plot_epx.Rd | 10 man/plot_ppc.Rd | 90 +++-- man/plot_ppc_combi.Rd | 57 ++- man/plot_scenario.Rd |only man/plot_sd.Rd | 33 +- man/set_window.Rd | 64 ++-- man/simulate_batch.Rd | 13 src/algae_TKTD.c | 16 - src/algae_simple.c | 8 src/algae_weber.c | 17 - tests/data/TOXSWA |only tests/testthat/test-GUTS_ring_test.R | 4 tests/testthat/test-import_toxswa.R |only tests/testthat/test-simulate_Algae_simple.R | 9 tests/testthat/test-simulate_batch.R |only tests/testthat/test-survival.R | 18 + vignettes/cvasi-1-manual.Rmd | 2 39 files changed, 1047 insertions(+), 748 deletions(-)
Title: Water and Measurements Quality
Description: The functions proposed in this package allows to graphically evaluate the process of measurement of the chemical components of water. TSSS() and ICHS functions are useful to control the quality of measurements of chemical components of a sample of water. If one or more measurements include an error, the generated graph will indicate it with a position of the point that represents the sample outside the confidence interval.
Author: Maela Lupo [aut, cre],
Andrea Porpatto [aut],
Alfredo Rigalli [aut]
Maintainer: Maela Lupo <maela.lupo@gmail.com>
Diff between AQuality versions 1.0 dated 2024-05-15 and 1.1 dated 2024-07-25
AQuality-1.0/AQuality/data/data.rda |only AQuality-1.0/AQuality/man/data.Rd |only AQuality-1.1/AQuality/DESCRIPTION | 10 +++++----- AQuality-1.1/AQuality/MD5 | 18 +++++++++++------- AQuality-1.1/AQuality/NAMESPACE | 2 +- AQuality-1.1/AQuality/R/ICHS.R |only AQuality-1.1/AQuality/build/partial.rdb |binary AQuality-1.1/AQuality/data/dataICHS.rda |only AQuality-1.1/AQuality/data/dataTSSS.rda |only AQuality-1.1/AQuality/man/AQuality-package.Rd | 2 +- AQuality-1.1/AQuality/man/ICHS.Rd |only AQuality-1.1/AQuality/man/TSSS.Rd | 8 ++++---- AQuality-1.1/AQuality/man/dataICHS.Rd |only AQuality-1.1/AQuality/man/dataTSSS.Rd |only 14 files changed, 22 insertions(+), 18 deletions(-)