Title: Matching and Weighting Multiply Imputed Datasets
Description: Provides the necessary tools for the pre-processing techniques of matching and weighting multiply imputed datasets to control for effects of confounders and to reduce the degree of dependence on certain modeling assumptions in studying the causal associations between an exposure and an outcome. This package includes functions to perform matching within and across the multiply imputed datasets using several matching methods, to estimate weights of units in the imputed datasets using several weighting methods, to calculate the causal effect estimate in each matched or weighted dataset using parametric or non-parametric statistical models, and to pool the obtained estimates from these models according to Rubin's rules (please see <https://github.com/FarhadPishgar/MatchThem> for details).
Author: Farhad Pishgar [aut, cre],
Noah Greifer [aut],
Clémence Leyrat [ctb]
Maintainer: Farhad Pishgar <Farhad.Pishgar@Gmail.com>
Diff between MatchThem versions 0.8.1 dated 2019-10-10 and 0.9.0 dated 2019-11-01
MatchThem-0.8.1/MatchThem/R/as2.mids.R |only MatchThem-0.8.1/MatchThem/R/bindthem.R |only MatchThem-0.8.1/MatchThem/R/match2.data.R |only MatchThem-0.8.1/MatchThem/R/matchthem.data.R |only MatchThem-0.8.1/MatchThem/R/mergethem.R |only MatchThem-0.8.1/MatchThem/R/weightthem.data.R |only MatchThem-0.8.1/MatchThem/R/with.mimids.R |only MatchThem-0.8.1/MatchThem/R/with.wimids.R |only MatchThem-0.8.1/MatchThem/man/bindthem.Rd |only MatchThem-0.8.1/MatchThem/man/matchthem.data.Rd |only MatchThem-0.8.1/MatchThem/man/mergethem.Rd |only MatchThem-0.8.1/MatchThem/man/weightthem.data.Rd |only MatchThem-0.8.1/MatchThem/man/with.mimids.Rd |only MatchThem-0.8.1/MatchThem/man/with.wimids.Rd |only MatchThem-0.9.0/MatchThem/DESCRIPTION | 23 +- MatchThem-0.9.0/MatchThem/MD5 | 63 +++--- MatchThem-0.9.0/MatchThem/NAMESPACE | 22 +- MatchThem-0.9.0/MatchThem/NEWS.md | 58 +++--- MatchThem-0.9.0/MatchThem/R/class.functions.R | 217 ++++++++++++++++++----- MatchThem-0.9.0/MatchThem/R/complete.R |only MatchThem-0.9.0/MatchThem/R/internal.functions.R |only MatchThem-0.9.0/MatchThem/R/is.R | 26 +- MatchThem-0.9.0/MatchThem/R/matchthem.R | 196 ++++++++++---------- MatchThem-0.9.0/MatchThem/R/mimids.R | 8 MatchThem-0.9.0/MatchThem/R/osteoarthritis.R | 18 - MatchThem-0.9.0/MatchThem/R/pool.R | 88 +++++---- MatchThem-0.9.0/MatchThem/R/weightthem.R | 156 +++++++--------- MatchThem-0.9.0/MatchThem/R/wimids.R | 8 MatchThem-0.9.0/MatchThem/R/with.R |only MatchThem-0.9.0/MatchThem/README.md | 59 +----- MatchThem-0.9.0/MatchThem/build |only MatchThem-0.9.0/MatchThem/inst |only MatchThem-0.9.0/MatchThem/man/complete.Rd |only MatchThem-0.9.0/MatchThem/man/is.mimids.Rd | 13 - MatchThem-0.9.0/MatchThem/man/is.wimids.Rd | 11 - MatchThem-0.9.0/MatchThem/man/matchthem.Rd | 29 +-- MatchThem-0.9.0/MatchThem/man/mimids.Rd | 7 MatchThem-0.9.0/MatchThem/man/osteoarthritis.Rd | 18 - MatchThem-0.9.0/MatchThem/man/pool.Rd | 26 +- MatchThem-0.9.0/MatchThem/man/weightthem.Rd | 49 +---- MatchThem-0.9.0/MatchThem/man/wimids.Rd | 7 MatchThem-0.9.0/MatchThem/man/with.Rd |only MatchThem-0.9.0/MatchThem/vignettes |only 43 files changed, 606 insertions(+), 496 deletions(-)
Title: Efficient Phylogenetics on Large Trees
Description: Efficient phylogenetic analyses on massive phylogenies comprising up to millions of tips. Functions include pruning, rerooting, calculation of most-recent common ancestors, calculating distances from the tree root and calculating pairwise distances. Calculation of phylogenetic signal and mean trait depth (trait conservatism), ancestral state reconstruction and hidden character prediction of discrete characters, simulating and fitting models of trait evolution, fitting and simulating diversification models, dating trees, comparing trees, and reading/writing trees in Newick format. Citation: Louca, Stilianos and Doebeli, Michael (2017) <doi:10.1093/bioinformatics/btx701>.
Author: Stilianos Louca
Maintainer: Stilianos Louca <louca@zoology.ubc.ca>
Diff between castor versions 1.4.3 dated 2019-09-20 and 1.5.0 dated 2019-11-01
DESCRIPTION | 8 MD5 | 45 NAMESPACE | 6 R/RcppExports.R | 48 R/auxiliary_routines.R | 165 + R/count_lineages_through_time.R | 47 R/extract_fasttree_constraints.R |only R/fit_hbd_model_parametric.R | 2 R/fit_hbd_pdr_on_grid.R | 156 + R/fit_hbd_psr_on_grid.R | 104 - R/fit_musse.R | 2 R/fit_tree_model.R | 9 R/generate_gene_tree_msc.R |only R/generate_gene_tree_msc_hgt_dl.R |only R/generate_random_tree.R | 28 R/generate_tree_hbd_reverse.R |only R/simulate_deterministic_hbd.R | 9 R/simulate_deterministic_hbd_msc.R |only man/count_lineages_through_time.Rd | 40 man/extract_fasttree_constraints.Rd |only man/fit_hbd_pdr_on_grid.Rd | 67 man/fit_hbd_psr_on_grid.Rd | 59 man/generate_gene_tree_msc.Rd |only man/generate_gene_tree_msc_hgt_dl.Rd |only man/generate_random_tree.Rd | 3 man/generate_tree_hbd_reverse.Rd |only src/RcppExports.cpp | 222 ++ src/phylogenetics_cpp_routines.cpp | 3450 ++++++++++++++++++++++++++++++++--- 28 files changed, 4054 insertions(+), 416 deletions(-)
Title: Analytic Insurance Rating Techniques
Description: Methods for insurance rating. It provides a data driven strategy for the construction of
insurance tariff classes. This strategy is based on the work by Antonio and Valdez (2012) <doi:10.1007/s10182-011-0152-7>.
The package also adds functionality showing additional lines for the reference
categories in the levels of the coefficients in the output of a generalized linear regression analysis.
In addition it implements a procedure determining the level of a factor with the largest exposure,
and thereafter changing the base level of the factor to this level.
Author: Martin Haringa
Maintainer: Martin Haringa <mtharinga@gmail.com>
Diff between insurancerating versions 0.4.2 dated 2019-05-31 and 0.4.3 dated 2019-11-01
DESCRIPTION | 9 +++++---- MD5 | 22 ++++++++++++---------- NAMESPACE | 5 +++++ NEWS.md | 4 ++++ R/construct_tariff_classes.R | 23 ++++++++++++----------- R/period_to_months.R |only R/plot_tariff_classes.R | 30 +++++++++++++++++++++++------- R/relevel.R | 2 +- R/zzz.R | 3 ++- man/autoplot.insurancerating.Rd | 15 ++++++++++----- man/biggest_reference.Rd | 2 +- man/construct_tariff_classes.Rd | 6 ++++-- man/period_to_months.Rd |only 13 files changed, 79 insertions(+), 42 deletions(-)
More information about insurancerating at CRAN
Permanent link
Title: Patches to Use 'dplyr' on Remote Data Sources
Description: Patches to use 'dplyr' on remote data sources ('SQL' databases,
'Spark' 2.0.0 and above) in a reliable "generic" fashion (generic meaning
user code works similarly on all such sources, without needing per-source
adaption). Due to the fluctuating nature of 'dplyr'/'dbplyr'/'rlang' 'APIs' this package
is going into maintenance mode. Most of the 'replyr' functions are now
done better by one of the non-monolithic replacement packages: 'wrapr', 'seplyr', 'rquery',
or 'cdata'.
Author: John Mount [aut, cre],
Nina Zumel [aut],
Win-Vector LLC [cph]
Maintainer: John Mount <jmount@win-vector.com>
Diff between replyr versions 1.0.4 dated 2019-07-24 and 1.0.5 dated 2019-11-01
DESCRIPTION | 14 MD5 | 35 NEWS.md | 4 README.md | 10 inst/doc/DependencySorting.R | 19 inst/doc/DependencySorting.Rmd | 15 inst/doc/DependencySorting.html | 2300 ------------------------------------- inst/doc/ParametricExample.html | 12 inst/doc/coalesce.html | 16 inst/doc/joinController.R | 11 inst/doc/joinController.Rmd | 6 inst/doc/joinController.html | 2292 ------------------------------------ inst/doc/letExample.html | 10 inst/doc/replyr.html | 18 inst/doc/summary.html | 16 vignettes/DependencySorting.Rmd | 15 vignettes/DependencySorting_d.png |only vignettes/DependencySorting_ig.png |only vignettes/joinController.Rmd | 6 vignettes/joinController1.png |only 20 files changed, 166 insertions(+), 4633 deletions(-)
Title: Create Pivot Tables in R
Description: Create regular pivot tables with just a few lines of R.
More complex pivot tables can also be created, e.g. pivot tables
with irregular layouts, multiple calculations and/or derived
calculations based on multiple data frames. Pivot tables are
constructed using R only and can be written to a range of
output formats (plain text, 'HTML', 'Latex' and 'Excel'),
including with styling/formatting.
Author: Christopher Bailiss [aut, cre]
Maintainer: Christopher Bailiss <cbailiss@gmail.com>
Diff between pivottabler versions 1.2.2 dated 2019-09-20 and 1.2.3 dated 2019-11-01
DESCRIPTION | 6 MD5 | 36 NEWS.md | 10 R/PivotDataGroup.R | 2 inst/doc/v01-introduction.html | 1541 +++++++++++++++++++-- inst/doc/v02-datagroups.html | 1583 +++++++++++++++++++--- inst/doc/v03-calculations.html | 2015 ++++++++++++++++++++++------ inst/doc/v04-outputs.html | 1539 +++++++++++++++++++-- inst/doc/v05-latexoutput.html | 1265 +++++++++++++++++- inst/doc/v06-styling.html | 1819 +++++++++++++++++++++---- inst/doc/v07-findingandformatting.html | 2313 ++++++++++++++++++++++++--------- inst/doc/v08-cellcontext.html | 1383 ++++++++++++++++++- inst/doc/v09-irregularlayout.html | 1651 ++++++++++++++++++++--- inst/doc/v10-performance.html | 1962 ++++++++++++++++++++++----- inst/doc/v11-shiny.html | 1124 +++++++++------- inst/doc/v12-excelexport.html | 1443 ++++++++++++++++++-- inst/doc/vA1-appendix.html | 1283 +++++++++++++++++- inst/doc/vA2-appendix.html | 1907 +++++++++++++++++++++------ inst/doc/vA3-appendix.html | 1259 +++++++++++++++++ 19 files changed, 20201 insertions(+), 3940 deletions(-)
Title: Effects of Changing Deposition Rates
Description: Reverse and model the effects of changing deposition rates on geological data and rates. Based on Hohmann (2018) <doi:10.13140/RG.2.2.23372.51841> .
Author: Niklas Hohmann
Maintainer: Niklas Hohmann <Niklas.Hohmann@fau.de>
Diff between DAIME versions 1.1 dated 2019-06-11 and 2.0 dated 2019-11-01
DESCRIPTION | 8 +- MD5 | 50 ++++++++------ R/patterntodepositionmodel.R |only R/patterntransform.R |only R/pointtransform.R |only R/strattotimepointbin.R | 77 ++++------------------ R/strattotimepointcont.R | 79 ++++------------------- R/strattotimeratebin.R | 88 +++++-------------------- R/strattotimeratecont.R | 87 ++++--------------------- R/timetostratpointbin.R | 75 ---------------------- R/timetostratpointcont.R | 92 --------------------------- R/timetostratratebin.R | 85 ++----------------------- R/timetostratratecont.R | 101 ++--------------------------- build/partial.rdb |binary inst/doc/DAIME.R | 11 ++- inst/doc/DAIME.Rmd | 95 ++++++++++++++++++++------- inst/doc/DAIME.html | 136 ++++++++++++++++++++++++++++++++-------- man/patterntodepositionmodel.Rd |only man/patterntransform.Rd |only man/pointtransform.Rd |only man/strattotimepointbin.Rd | 20 ++--- man/strattotimepointcont.Rd | 21 ++---- man/strattotimeratebin.Rd | 32 ++++----- man/strattotimeratecont.Rd | 41 +++++------- man/timetostratpointbin.Rd | 14 ++-- man/timetostratpointcont.Rd | 15 +--- man/timetostratratebin.Rd | 40 +++++------ man/timetostratratecont.Rd | 31 ++++----- vignettes/DAIME.Rmd | 95 ++++++++++++++++++++------- 29 files changed, 474 insertions(+), 819 deletions(-)
Title: Comfortable Search for R Packages on CRAN Directly from the R
Console
Description: Search for R packages on CRAN directly from the R console, based on the packages' titles, short and long descriptions, or other fields. Combine multiple keywords with logical operators ('and', 'or'), view detailed information on any package and keep track of the latest package contributions to CRAN.
Author: Joachim Zuckarelli [aut, cre] (<https://orcid.org/0000-0002-9280-3016>)
Maintainer: Joachim Zuckarelli <joachim@zuckarelli.de>
Diff between packagefinder versions 0.1.4 dated 2019-05-27 and 0.1.5 dated 2019-11-01
DESCRIPTION | 6 +- MD5 | 15 +++---- NAMESPACE | 1 NEWS.md | 10 ++++ R/packagefinder.r | 108 ++++++++++++++++++++++++++++++++++++++--------------- README.md | 1 man/findPackage.Rd | 8 ++- man/fp.Rd |only man/whatsNew.Rd | 2 9 files changed, 110 insertions(+), 41 deletions(-)
Title: Functions to Support the ICES Transparent Assessment Framework
Description: Functions to support the ICES Transparent Assessment Framework
<http://taf.ices.dk> to organize data, methods, and results used in ICES
assessments. ICES is an organization facilitating international collaboration
in marine science.
Author: Arni Magnusson [aut, cre],
Colin Millar [aut],
Alexandros Kokkalis [ctb]
Maintainer: Arni Magnusson <arni.magnusson@ices.dk>
Diff between icesTAF versions 3.1-1 dated 2019-05-24 and 3.2-0 dated 2019-11-01
DESCRIPTION | 8 +-- MD5 | 99 ++++++++++++++++++++++++++----------------------- NAMESPACE | 9 +++- NEWS | 51 +++++++++++++++++++++++++ R/clean.R | 25 ++++++++---- R/clean.library.R |only R/clean.software.R |only R/convert.spaces.R | 9 +++- R/cp.R | 13 ++++-- R/download.R | 18 ++++++++ R/download.github.R |only R/draft.data.R | 77 +++++++++++++++++++++++++------------- R/draft.software.R | 40 ++++++++++++++++--- R/ds.package.R | 5 +- R/file.encoding.R | 5 -- R/icesTAF-package.R | 24 ++++++----- R/line.endings.R | 3 - R/make.R | 10 +++- R/makeAll.R | 8 +-- R/makeTAF.R | 24 +++++------ R/period.R | 6 -- R/process.bib.R | 75 ++++++++++++++++++++++++++++++------- R/process.inner.R | 45 ++-------------------- R/rmdir.R | 3 - R/sourceAll.R | 8 +-- R/sourceDir.R | 2 R/sourceTAF.R | 6 +- R/taf.bootstrap.R | 80 +++++++++++++++++++++------------------ R/taf.install.R |only R/taf.library.R | 11 ++++- R/write.taf.R | 10 ++++ R/zoom.R | 4 - data/catage.long.rda |binary data/catage.taf.rda |binary data/catage.xtab.rda |binary data/summary.taf.rda |binary data/taf.colors.rda |binary man/clean.Rd | 20 ++++++--- man/clean.library.Rd |only man/clean.software.Rd |only man/convert.spaces.Rd | 4 + man/cp.Rd | 8 ++- man/download.Rd | 16 +++++++ man/download.github.Rd |only man/draft.data.Rd | 46 +++++++++++++--------- man/draft.software.Rd | 18 ++++++-- man/file.encoding.Rd | 2 man/icesTAF-package.Rd | 24 ++++++----- man/make.Rd | 7 ++- man/process.bib.Rd | 61 +++++++++++++++++++++++------- man/sourceDir.Rd | 2 man/taf.bootstrap.Rd | 47 ++++++++++++++--------- man/taf.install.Rd |only man/taf.library.Rd | 2 tests |only 55 files changed, 614 insertions(+), 321 deletions(-)
Title: A Framework for Reproducible and Collaborative Data Science
Description: Provides a workflow for your analysis projects by combining
literate programming ('knitr' and 'rmarkdown') and version control
('Git', via 'git2r') to generate a website containing time-stamped,
versioned, and documented results.
Author: John Blischak [aut, cre] (<https://orcid.org/0000-0003-2634-9879>),
Peter Carbonetto [aut] (<https://orcid.org/0000-0003-1144-6780>),
Matthew Stephens [aut] (<https://orcid.org/0000-0001-5397-9257>),
Luke Zappia [ctb] (Instructions for hosting with GitLab),
Pierre Formont [ctb] (Support for hosting with Shiny Server),
Tim Trice [ctb] (Instructions for sharing common code),
Jiaxiang Li [ctb] (Function wflow_toc() to create table of contents),
Michael J. Kane [ctb] (<https://orcid.org/0000-0003-1899-6662>, Option
suppress_report)
Maintainer: John Blischak <jdblischak@uchicago.edu>
Diff between workflowr versions 1.4.0 dated 2019-06-08 and 1.5.0 dated 2019-11-01
workflowr-1.4.0/workflowr/vignettes/github-new-repo.png |only workflowr-1.5.0/workflowr/DESCRIPTION | 28 workflowr-1.5.0/workflowr/MD5 | 155 ++-- workflowr-1.5.0/workflowr/NAMESPACE | 2 workflowr-1.5.0/workflowr/NEWS.md | 133 ++++ workflowr-1.5.0/workflowr/R/git.R | 74 +- workflowr-1.5.0/workflowr/R/git2r.R | 97 --- workflowr-1.5.0/workflowr/R/infrastructure.R | 6 workflowr-1.5.0/workflowr/R/report.R | 321 +++++----- workflowr-1.5.0/workflowr/R/utility.R | 38 + workflowr-1.5.0/workflowr/R/wflow_build.R | 28 workflowr-1.5.0/workflowr/R/wflow_git_commit.R | 21 workflowr-1.5.0/workflowr/R/wflow_git_pull.R | 108 ++- workflowr-1.5.0/workflowr/R/wflow_git_push.R | 19 workflowr-1.5.0/workflowr/R/wflow_html.R | 5 workflowr-1.5.0/workflowr/R/wflow_options.R | 12 workflowr-1.5.0/workflowr/R/wflow_paths.R | 11 workflowr-1.5.0/workflowr/R/wflow_publish.R | 14 workflowr-1.5.0/workflowr/R/wflow_quickstart.R |only workflowr-1.5.0/workflowr/R/wflow_remove.R | 2 workflowr-1.5.0/workflowr/R/wflow_rename.R | 2 workflowr-1.5.0/workflowr/R/wflow_rename_proj.R | 2 workflowr-1.5.0/workflowr/R/wflow_start.R | 14 workflowr-1.5.0/workflowr/R/wflow_status.R | 61 + workflowr-1.5.0/workflowr/R/wflow_use_github.R | 81 +- workflowr-1.5.0/workflowr/R/zzz.R | 46 + workflowr-1.5.0/workflowr/build/vignette.rds |binary workflowr-1.5.0/workflowr/inst/CITATION |only workflowr-1.5.0/workflowr/inst/WORDLIST | 11 workflowr-1.5.0/workflowr/inst/doc/wflow-01-getting-started.Rmd | 7 workflowr-1.5.0/workflowr/inst/doc/wflow-01-getting-started.html | 77 +- workflowr-1.5.0/workflowr/inst/doc/wflow-02-customization.html | 12 workflowr-1.5.0/workflowr/inst/doc/wflow-03-migrating.R | 5 workflowr-1.5.0/workflowr/inst/doc/wflow-03-migrating.Rmd | 27 workflowr-1.5.0/workflowr/inst/doc/wflow-03-migrating.html | 19 workflowr-1.5.0/workflowr/inst/doc/wflow-04-how-it-works.html | 10 workflowr-1.5.0/workflowr/inst/doc/wflow-05-faq.Rmd | 121 +++ workflowr-1.5.0/workflowr/inst/doc/wflow-05-faq.html | 73 ++ workflowr-1.5.0/workflowr/inst/doc/wflow-06-gitlab.html | 12 workflowr-1.5.0/workflowr/inst/doc/wflow-07-common-code.html | 12 workflowr-1.5.0/workflowr/inst/doc/wflow-08-deploy.html | 10 workflowr-1.5.0/workflowr/inst/doc/wflow-09-workshop.R |only workflowr-1.5.0/workflowr/inst/doc/wflow-09-workshop.Rmd |only workflowr-1.5.0/workflowr/inst/doc/wflow-09-workshop.html |only workflowr-1.5.0/workflowr/man/wflow_build.Rd | 16 workflowr-1.5.0/workflowr/man/wflow_git_pull.Rd | 9 workflowr-1.5.0/workflowr/man/wflow_git_push.Rd | 12 workflowr-1.5.0/workflowr/man/wflow_html.Rd | 5 workflowr-1.5.0/workflowr/man/wflow_publish.Rd | 13 workflowr-1.5.0/workflowr/man/wflow_quickstart.Rd |only workflowr-1.5.0/workflowr/man/wflow_status.Rd | 14 workflowr-1.5.0/workflowr/man/wflow_use_github.Rd | 55 + workflowr-1.5.0/workflowr/man/workflowr.Rd | 30 workflowr-1.5.0/workflowr/tests/system-info.R | 7 workflowr-1.5.0/workflowr/tests/testthat/files/test-wflow_quickstart |only workflowr-1.5.0/workflowr/tests/testthat/files/test-wflow_update/post/_workflowr.yml | 2 workflowr-1.5.0/workflowr/tests/testthat/test-callr.R |only workflowr-1.5.0/workflowr/tests/testthat/test-git.R | 53 + workflowr-1.5.0/workflowr/tests/testthat/test-git2r-merge.R |only workflowr-1.5.0/workflowr/tests/testthat/test-git2r.R | 108 +-- workflowr-1.5.0/workflowr/tests/testthat/test-obtain_existing_path.R | 10 workflowr-1.5.0/workflowr/tests/testthat/test-pkg-options.R |only workflowr-1.5.0/workflowr/tests/testthat/test-report.R | 300 ++++++++- workflowr-1.5.0/workflowr/tests/testthat/test-suppress_report.R |only workflowr-1.5.0/workflowr/tests/testthat/test-utility.R | 94 ++ workflowr-1.5.0/workflowr/tests/testthat/test-vig-getting-started.R | 4 workflowr-1.5.0/workflowr/tests/testthat/test-wflow_git_commit.R | 48 + workflowr-1.5.0/workflowr/tests/testthat/test-wflow_git_push_pull.R | 61 + workflowr-1.5.0/workflowr/tests/testthat/test-wflow_options.R |only workflowr-1.5.0/workflowr/tests/testthat/test-wflow_publish.R | 11 workflowr-1.5.0/workflowr/tests/testthat/test-wflow_quickstart.R |only workflowr-1.5.0/workflowr/tests/testthat/test-wflow_remove.R | 6 workflowr-1.5.0/workflowr/tests/testthat/test-wflow_rename.R | 8 workflowr-1.5.0/workflowr/tests/testthat/test-wflow_rename_proj-external.R | 2 workflowr-1.5.0/workflowr/tests/testthat/test-wflow_rename_proj.R | 2 workflowr-1.5.0/workflowr/tests/testthat/test-wflow_start.R | 23 workflowr-1.5.0/workflowr/tests/testthat/test-wflow_status.R | 74 ++ workflowr-1.5.0/workflowr/vignettes/img |only workflowr-1.5.0/workflowr/vignettes/wflow-01-getting-started.Rmd | 7 workflowr-1.5.0/workflowr/vignettes/wflow-03-migrating.Rmd | 27 workflowr-1.5.0/workflowr/vignettes/wflow-05-faq.Rmd | 121 +++ workflowr-1.5.0/workflowr/vignettes/wflow-09-workshop.Rmd |only 82 files changed, 2140 insertions(+), 658 deletions(-)
Title: An Integrated Framework for Textual Sentiment Time Series
Aggregation and Prediction
Description: Optimized prediction based on textual sentiment, accounting for the intrinsic challenge that sentiment can be computed and pooled across texts and time in various ways. See Ardia et al. (2019) <doi:10.2139/ssrn.3067734>.
Author: Samuel Borms [aut, cre] (<https://orcid.org/0000-0001-9533-1870>),
David Ardia [aut] (<https://orcid.org/0000-0003-2823-782X>),
Keven Bluteau [aut] (<https://orcid.org/0000-0003-2990-4807>),
Kris Boudt [aut] (<https://orcid.org/0000-0002-1000-5142>),
Jeroen Van Pelt [ctb],
Andres Algaba [ctb]
Maintainer: Samuel Borms <samuel.borms@unine.ch>
Diff between sentometrics versions 0.7.5 dated 2019-10-30 and 0.7.6 dated 2019-11-01
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS.md | 3 +++ src/utils.h | 2 +- 4 files changed, 10 insertions(+), 7 deletions(-)
Title: A Toolbox for Multivariate Meta-Analysis
Description: A toolbox for meta-analysis. This package includes a collection of functions for (1) implementing robust multivariate meta-analysis of continuous or binary outcomes; and (2) a bivariate Egger's test for detecting small study effects.
Author: Yong Chen [aut, cre],
Chuan Hong [aut],
Haitao Chu [ctb],
Yulun Liu [ctb]
Maintainer: Yong Chen <ychen123@upenn.edu>
Diff between xmeta versions 1.1-4 dated 2017-08-16 and 1.1-5 dated 2019-11-01
xmeta-1.1-4/xmeta/R/galaxy.R |only xmeta-1.1-4/xmeta/R/mpbt.R |only xmeta-1.1-4/xmeta/R/summary.galaxy.R |only xmeta-1.1-4/xmeta/R/summary.mpbt.R |only xmeta-1.1-4/xmeta/man/galaxy.Rd |only xmeta-1.1-4/xmeta/man/mpbt.Rd |only xmeta-1.1-4/xmeta/man/summary.galaxy.rd |only xmeta-1.1-4/xmeta/man/summary.mpbt.rd |only xmeta-1.1-5/xmeta/DESCRIPTION | 10 +-- xmeta-1.1-5/xmeta/MD5 | 18 ++--- xmeta-1.1-5/xmeta/NAMESPACE | 23 +++---- xmeta-1.1-5/xmeta/R/msset.R |only xmeta-1.1-5/xmeta/R/summary.msset.R |only xmeta-1.1-5/xmeta/man/msset.Rd |only xmeta-1.1-5/xmeta/man/summary.msset.rd |only xmeta-1.1-5/xmeta/man/xmeta-package.Rd | 101 +++++++++++++++----------------- 16 files changed, 73 insertions(+), 79 deletions(-)
Title: Solving Mixed Model Equations in R
Description: Structural multivariate-univariate linear mixed model solver for estimation of multiple random effects and unknown variance-covariance structures (i.e. heterogeneous and unstructured variance models) (Covarrubias-Pazaran, 2016 <doi:10.1371/journal.pone.0156744>; Maier et al., 2015 <doi:10.1016/j.ajhg.2014.12.006>). ML/REML estimates can be obtained using the Direct-Inversion Newton-Raphson and Direct-Inversion Average Information algorithms. Designed for genomic prediction and genome wide association studies (GWAS), particularly focused in the p > n problem (more coefficients than observations) and dense known covariance structures for levels of random effects. Spatial models can also be fitted using i.e. the two-dimensional spline functionality available in sommer.
Author: Giovanny Covarrubias-Pazaran
Maintainer: Giovanny Covarrubias-Pazaran <cova_ruber@live.com.mx>
Diff between sommer versions 4.0.4 dated 2019-08-24 and 4.0.8 dated 2019-11-01
CHANGELOG | 1 DESCRIPTION | 8 MD5 | 58 - R/FUN_special.R | 6 R/FUN_utils.R | 2 R/GWAS.R | 21 R/mmer.R | 4 build/vignette.rds |binary data/DT_augment.RData |binary data/DT_btdata.RData |binary data/DT_cornhybrids.RData |binary data/DT_cpdata.RData |binary data/DT_example.RData |binary data/DT_expdesigns.RData |binary data/DT_fulldiallel.RData |binary data/DT_gryphon.RData |binary data/DT_h2.RData |binary data/DT_halfdiallel.RData |binary data/DT_legendre.RData |binary data/DT_polyploid.RData |binary data/DT_rice.RData |binary data/DT_technow.RData |binary data/DT_wheat.RData |binary data/DT_yatesoats.RData |binary man/mmer.Rd | 2 man/vs.Rd | 2 vignettes/sommer.FAQ.html | 1012 ++++++++++++------------ vignettes/sommer.changes.html | 555 +++++++------ vignettes/sommer.html | 1435 +++++++++++++++++++---------------- vignettes/sommer.start.html | 1704 +++++++++++++++++++++++------------------- 30 files changed, 2589 insertions(+), 2221 deletions(-)
Title: Space-Filling Design under Maximin Distance
Description: Constructs a space-filling design under the criterion of maximin distance. Both discrete and continuous versions are provided.
Author: Furong Sun <furongs@vt.edu>, Robert B. Gramacy <rbg@vt.edu>
Maintainer: Furong Sun <furongs@vt.edu>
Diff between maximin versions 1.0-2 dated 2019-02-02 and 1.0-3 dated 2019-11-01
ChangeLog | 11 ++ DESCRIPTION | 10 +- MD5 | 15 ++- NAMESPACE | 7 - R/data.R |only R/maximin.R | 226 ++++++++++++++++++++++++++++++------------------------- R/maximin_cand.R | 149 +++++++++++++++++++----------------- data |only man/lola_kn.Rd |only man/maximin.Rd | 10 +- 10 files changed, 239 insertions(+), 189 deletions(-)
Title: Efficient Determination of Sample Size in Balanced Design of
Experiments
Description: Provides the sample size in balanced design of experiments and three graphs ; detectable standardized effect size vs power, sample size vs detectable standardized effect size, and sample size vs power.
Sample size is computed in order to detect a certain standardized effect size with power at the significance level.
Three graphs show the mutual relationship between the sample size, power and the detectable standardized effect size.
By investigating those graphs, it can be checked that which effects are sensitive to the efficient sample size determination.
Lenth,R.V.(2006-9) <http://www.stat.uiowa.edu/~rlenth/Power>
Lim, Yong Bin (1998)
Marvin, A., Kastenbaum, A. and Hoel, D.G. (1970) <doi:10.2307/2334851>
Montgomery, Douglas C. (2013, ISBN: 0849323312).
Author: Jong Hee Chung, Yong Bin Lim
Maintainer: Jong Hee Chung <jochung947@gmail.com>
Diff between BDEsize versions 1.1 dated 2019-03-31 and 1.2 dated 2019-11-01
DESCRIPTION | 8 +- MD5 | 24 +++--- R/BDEsizeApp.R | 208 ++++++++++++++++++++++++++++++----------------------- R/Size.2levFr.R | 8 +- R/Size.Block.R | 13 ++- R/Size.Full.R | 12 ++- R/Size.Split.R | 7 + R/plots.2levFr.R | 26 +++--- R/plots.Block.R | 24 +++--- R/plots.Full.R | 24 +++--- R/plots.Split.R | 36 ++++----- R/sizelist.R | 8 +- man/plots.Split.Rd | 8 +- 13 files changed, 235 insertions(+), 171 deletions(-)