Sun, 28 May 2023

Package dogesr updated to version 0.3.0 with previous version 0.2.0 dated 2023-02-21

Title: Work with the Doges/Dogaresse Dataset
Description: Work with data on Venetian doges and dogaresse and the noble families of the Republic of Venice, and use it for social network analysis, as used in Merelo (2022) <arXiv:2209.07334>.
Author: Juan Julian Merelo-Guervos
Maintainer: Juan Julian Merelo-Guervos <jjmerelo@gmail.com>

Diff between dogesr versions 0.2.0 dated 2023-02-21 and 0.3.0 dated 2023-05-28

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Package sentopics updated to version 0.7.2 with previous version 0.7.1 dated 2022-05-18

Title: Tools for Joint Sentiment and Topic Analysis of Textual Data
Description: A framework that joins topic modeling and sentiment analysis of textual data. The package implements a fast Gibbs sampling estimation of Latent Dirichlet Allocation (Griffiths and Steyvers (2004) <doi:10.1073/pnas.0307752101>) and Joint Sentiment/Topic Model (Lin, He, Everson and Ruger (2012) <doi:10.1109/TKDE.2011.48>). It offers a variety of helpers and visualizations to analyze the result of topic modeling. The framework also allows enriching topic models with dates and externally computed sentiment measures. A flexible aggregation scheme enables the creation of time series of sentiment or topical proportions from the enriched topic models. Moreover, a novel method jointly aggregates topic proportions and sentiment measures to derive time series of topical sentiment.
Author: Olivier Delmarcelle [aut, cre] , Samuel Borms [ctb] , Chengua Lin [cph] , Yulan He [cph] , Jose Bernardo [cph] , David Robinson [cph] ), Julia Silge [cph] , <https://orcid.org/0000-0002-3671-836X>)
Maintainer: Olivier Delmarcelle <delmarcelle.olivier@gmail.com>

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Package ergm updated to version 4.5.0 with previous version 4.4.0 dated 2023-01-27

Title: Fit, Simulate and Diagnose Exponential-Family Models for Networks
Description: An integrated set of tools to analyze and simulate networks based on exponential-family random graph models (ERGMs). 'ergm' is a part of the Statnet suite of packages for network analysis. See Hunter, Handcock, Butts, Goodreau, and Morris (2008) <doi:10.18637/jss.v024.i03> and Krivitsky, Hunter, Morris, and Klumb (2023) <doi:10.18637/jss.v105.i06>.
Author: Mark S. Handcock [aut], David R. Hunter [aut], Carter T. Butts [aut], Steven M. Goodreau [aut], Pavel N. Krivitsky [aut, cre] , Martina Morris [aut], Li Wang [ctb], Kirk Li [ctb], Skye Bender-deMoll [ctb], Chad Klumb [ctb], Michal Bojanowski [ctb] , [...truncated...]
Maintainer: Pavel N. Krivitsky <pavel@statnet.org>

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Package collapse updated to version 1.9.6 with previous version 1.9.5 dated 2023-04-07

Title: Advanced and Fast Data Transformation
Description: A C/C++ based package for advanced data transformation and statistical computing in R that is extremely fast, class-agnostic, and programmer friendly through a flexible and robust API. Core functionality includes a rich set of S3 generic grouped and weighted statistical functions for vectors, matrices and data frames, which provide efficient low-level vectorizations, OpenMP multithreading, and skip missing values by default. These are integrated with fast grouping and ordering algorithms (also callable from C), and efficient data manipulation functions. The package also provides a flexible and rigorous approach to time series and panel data in R. It further includes fast functions for common statistical procedures, detailed (grouped, weighted) summary statistics, powerful tools to work with nested data, fast data object conversions, functions for memory efficient R programming, and helpers to effectively deal with variable labels, attributes, and missing data. It is well integrated wit [...truncated...]
Author: Sebastian Krantz [aut, cre], Matt Dowle [ctb], Arun Srinivasan [ctb], Morgan Jacob [ctb], Dirk Eddelbuettel [ctb], Laurent Berge [ctb], Kevin Tappe [ctb], R Core Team and contributors worldwide [ctb], Martyn Plummer [cph], 1999-2016 The R Core Team [ [...truncated...]
Maintainer: Sebastian Krantz <sebastian.krantz@graduateinstitute.ch>

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Package RcmdrPlugin.WorldFlora updated to version 1.3 with previous version 1.2 dated 2022-09-07

Title: R Commander Plug-in for the 'WorldFlora' Package
Description: An R Commander plug-in for the 'WorldFlora' package. It was mainly developed to show work flows and scripts for first-time users.
Author: Roeland Kindt [cre, aut]
Maintainer: Roeland Kindt <RoelandCEKindt@gmail.com>

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Package augmentedRCBD updated to version 0.1.6 with previous version 0.1.5 dated 2021-06-12

Title: Analysis of Augmented Randomised Complete Block Designs
Description: Functions for analysis of data generated from experiments in augmented randomised complete block design according to Federer, W.T. (1961) <doi:10.2307/2527837>. Computes analysis of variance, adjusted means, descriptive statistics, genetic variability statistics etc. Further includes data visualization and report generation functions.
Author: J. Aravind [aut, cre] , S. Mukesh Sankar [aut], Dhammaprakash Pandhari Wankhede [aut] , Vikender Kaur [aut], ICAR-NBGPR [cph]
Maintainer: J. Aravind <j.aravind@icar.gov.in>

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Package ODRF updated to version 0.0.4 with previous version 0.0.3 dated 2023-03-16

Title: Oblique Decision Random Forest for Classification and Regression
Description: The oblique decision tree (ODT) uses linear combinations of predictors as partitioning variables in a decision tree. Oblique Decision Random Forest (ODRF) is an ensemble of multiple ODTs generated by feature bagging. Both can be used for classification and regression as supplements to the classical CART of Breiman (1984) <DOI:10.1201/9781315139470> and Random Forest of Breiman (2001) <DOI:10.1023/A:1010933404324> respectively.
Author: Yu Liu [aut, cre, cph], Yingcun Xia [aut]
Maintainer: Yu Liu <liuyuchina123@gmail.com>

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Sat, 27 May 2023

Package treediff updated to version 0.2 with previous version 0.1 dated 2023-03-01

Title: Testing Differences Between Families of Trees
Description: Perform test to detect differences in structure between families of trees. The method is based on cophenetic distances and aggregated Student's tests.
Author: Nathalie Vialaneix [aut, cre] , Gwendaelle Cardenas [aut], Marie Chavent [aut], Sylvain Foissac [aut], Pierre Neuvial [aut], Nathanael Randriamihamison [aut]
Maintainer: Nathalie Vialaneix <nathalie.vialaneix@inrae.fr>

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Package measr updated to version 0.3.1 with previous version 0.2.1 dated 2023-04-03

Title: Bayesian Psychometric Measurement Using 'Stan'
Description: Estimate diagnostic classification models (also called cognitive diagnostic models) with 'Stan'. Diagnostic classification models are confirmatory latent class models, as described by Rupp et al. (2010, ISBN: 978-1-60623-527-0). Automatically generate 'Stan' code for the general loglinear cognitive diagnostic diagnostic model proposed by Henson et al. (2009) <doi:10.1007/s11336-008-9089-5> and other subtypes that introduce additional model constraints. Using the generated 'Stan' code, estimate the model evaluate the model's performance using model fit indices, information criteria, and reliability metrics.
Author: W. Jake Thompson [aut, cre] , Nathan Jones [ctb] , Matthew Johnson [cph] ), Paul-Christian Buerkner [cph] ), University of Kansas [cph], Institute of Education Sciences [fnd]
Maintainer: W. Jake Thompson <wjakethompson@gmail.com>

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Package FIESTAutils updated to version 1.1.7 with previous version 1.1.6 dated 2023-05-04

Title: Utility Functions for Forest Inventory Estimation and Analysis
Description: A set of tools for data wrangling, spatial data analysis, statistical modeling (including direct, model-assisted, photo-based, and small area tools), and USDA Forest Service data base tools. These tools are aimed to help Foresters, Analysts, and Scientists extract and perform analyses on USDA Forest Service data.
Author: Tracey Frescino [aut], Chris Toney [aut], Grayson White [aut, cre]
Maintainer: Grayson White <graysonwhite13@gmail.com>

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Package etwfe updated to version 0.3.3 with previous version 0.3.2 dated 2023-05-02

Title: Extended Two-Way Fixed Effects
Description: Convenience functions for implementing extended two-way fixed effect regressions a la Wooldridge (2021, 2022) <doi:10.2139/ssrn.3906345>, <doi:10.2139/ssrn.4183726>.
Author: Grant McDermott [aut, cre] , Frederic Kluser [ctb]
Maintainer: Grant McDermott <grantmcd@uoregon.edu>

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Package babelmixr2 updated to version 0.1.1 with previous version 0.1.0 dated 2022-10-28

Title: Use 'nlmixr2' to Interact with Open Source and Commercial Software
Description: Run other estimation and simulation software via the 'nlmixr2' (Fidler et al (2019) <doi:10.1002/psp4.12445>) interface including 'PKNCA', 'NONMEM' and 'Monolix'. While not required, you can get/install the 'lixoftConnectors' package in the 'Monolix' installation, as described at the following url <https://monolix.lixoft.com/monolix-api/lixoftconnectors_installation/>. When 'lixoftConnectors' is available, 'Monolix' can be run directly instead of setting up command line usage.
Author: Matthew Fidler [aut, cre] , Bill Denney [aut] , Nook Fulloption [ctb]
Maintainer: Matthew Fidler <matt.fidler@novartis.com>

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Package photobiology updated to version 0.10.17 with previous version 0.10.16 dated 2023-04-02

Title: Photobiological Calculations
Description: Definitions of classes, methods, operators and functions for use in photobiology and radiation meteorology and climatology. Calculation of effective (weighted) and not-weighted irradiances/doses, fluence rates, transmittance, reflectance, absorptance, absorbance and diverse ratios and other derived quantities from spectral data. Local maxima and minima: peaks, valleys and spikes. Conversion between energy-and photon-based units. Wavelength interpolation. Astronomical calculations related solar angles and day length. Colours and vision. This package is part of the 'r4photobiology' suite, Aphalo, P. J. (2015) <doi:10.19232/uv4pb.2015.1.14>.
Author: Pedro J. Aphalo [aut, cre] , Titta K. Kotilainen [ctb] , Glenn Davis [ctb], Agnese Fazio [ctb]
Maintainer: Pedro J. Aphalo <pedro.aphalo@helsinki.fi>

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Package SSBtools updated to version 1.4.6 with previous version 1.4.4 dated 2023-03-28

Title: Statistics Norway's Miscellaneous Tools
Description: Functions used by other packages from Statistics Norway are gathered. General data manipulation functions, and functions for hierarchical computations are included (Langsrud, 2020) <doi:10.13140/RG.2.2.27313.61283>. The hierarchy specification functions are useful within statistical disclosure control.
Author: Oyvind Langsrud [aut, cre], Daniel Lupp [aut], Bjoern-Helge Mevik [ctb]
Maintainer: Oyvind Langsrud <oyl@ssb.no>

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Package mzipmed updated to version 1.3.5 with previous version 1.3.0 dated 2023-04-16

Title: Mediation using MZIP Model
Description: We implement functions allowing for mediation analysis to be performed in cases where the mediator is a count variable with excess zeroes. First a function is provided allowing users to perform analysis for zero-inflated count variables using the marginalized zero-inflated Poisson (MZIP) model (Long et al. 2014 <DOI:10.1002/sim.6293>). Using the counterfactual approach to mediation and MZIP we can obtain natural direct and indirect effects for the overall population. Using delta method processes variance estimation can be performed instantaneously. Alternatively, bootstrap standard errors can be used. We also provide functions for cases with exposure-mediator interactions with four-way decomposition of total effect.
Author: Andrew Sims [aut, cre] , Dustin Long [aut], Hemant Tiwari [aut], Leann Long [aut]
Maintainer: Andrew Sims <ams329@uab.edu>

Diff between mzipmed versions 1.3.0 dated 2023-04-16 and 1.3.5 dated 2023-05-27

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Package jmvReadWrite updated to version 0.3.5 with previous version 0.3.4 dated 2023-05-06

Title: Read and Write 'jamovi' Files ('.omv')
Description: The free and open a statistical spreadsheet 'jamovi' (<https://www.jamovi.org>) aims to make statistical analyses easy and intuitive. 'jamovi' produces syntax that can directly be used in R (in connection with the R-package 'jmv'). Having import / export routines for the data files 'jamovi' produces ('.omv') permits an easy transfer of analyses between 'jamovi' and R.
Author: Sebastian Jentschke [aut, cre]
Maintainer: Sebastian Jentschke <sebastian.jentschke@uib.no>

Diff between jmvReadWrite versions 0.3.4 dated 2023-05-06 and 0.3.5 dated 2023-05-27

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Package bartcs updated to version 1.2.0 with previous version 1.1.0 dated 2023-05-01

Title: Bayesian Additive Regression Trees for Confounder Selection
Description: Fit Bayesian Regression Additive Trees (BART) models to select true confounders from a large set of potential confounders and to estimate average treatment effect. For more information, see Kim et al. (2023) <doi:10.1111/biom.13833>.
Author: Yeonghoon Yoo [aut, cre]
Maintainer: Yeonghoon Yoo <yooyh.stat@gmail.com>

Diff between bartcs versions 1.1.0 dated 2023-05-01 and 1.2.0 dated 2023-05-27

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Package eventPred updated to version 0.1.4 with previous version 0.1.3 dated 2023-05-15

Title: Event Prediction
Description: Predicts enrollment and events at the design or analysis stage using specified enrollment and time-to-event models through simulations.
Author: Kaifeng Lu [aut, cre]
Maintainer: Kaifeng Lu <kaifenglu@gmail.com>

Diff between eventPred versions 0.1.3 dated 2023-05-15 and 0.1.4 dated 2023-05-27

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Package BiodiversityR updated to version 2.15-2 with previous version 2.15-1 dated 2023-01-06

Title: Package for Community Ecology and Suitability Analysis
Description: Graphical User Interface (via the R-Commander) and utility functions (often based on the vegan package) for statistical analysis of biodiversity and ecological communities, including species accumulation curves, diversity indices, Renyi profiles, GLMs for analysis of species abundance and presence-absence, distance matrices, Mantel tests, and cluster, constrained and unconstrained ordination analysis. A book on biodiversity and community ecology analysis is available for free download from the website. In 2012, methods for (ensemble) suitability modelling and mapping were expanded in the package.
Author: Roeland Kindt [cre, aut]
Maintainer: Roeland Kindt <RoelandCEKindt@gmail.com>

Diff between BiodiversityR versions 2.15-1 dated 2023-01-06 and 2.15-2 dated 2023-05-27

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Package tidycensus updated to version 1.4 with previous version 1.3.4 dated 2023-05-19

Title: Load US Census Boundary and Attribute Data as 'tidyverse' and 'sf'-Ready Data Frames
Description: An integrated R interface to several United States Census Bureau APIs (<https://www.census.gov/data/developers/data-sets.html>) and the US Census Bureau's geographic boundary files. Allows R users to return Census and ACS data as tidyverse-ready data frames, and optionally returns a list-column with feature geometry for mapping and spatial analysis.
Author: Kyle Walker [aut, cre], Matt Herman [aut], Kris Eberwein [ctb]
Maintainer: Kyle Walker <kyle@walker-data.com>

Diff between tidycensus versions 1.3.4 dated 2023-05-19 and 1.4 dated 2023-05-27

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Package RcppArmadillo updated to version 0.12.4.0.0 with previous version 0.12.2.0.0 dated 2023-04-05

Title: 'Rcpp' Integration for the 'Armadillo' Templated Linear Algebra Library
Description: 'Armadillo' is a templated C++ linear algebra library (by Conrad Sanderson) that aims towards a good balance between speed and ease of use. Integer, floating point and complex numbers are supported, as well as a subset of trigonometric and statistics functions. Various matrix decompositions are provided through optional integration with LAPACK and ATLAS libraries. The 'RcppArmadillo' package includes the header files from the templated 'Armadillo' library. Thus users do not need to install 'Armadillo' itself in order to use 'RcppArmadillo'. From release 7.800.0 on, 'Armadillo' is licensed under Apache License 2; previous releases were under licensed as MPL 2.0 from version 3.800.0 onwards and LGPL-3 prior to that; 'RcppArmadillo' (the 'Rcpp' bindings/bridge to Armadillo) is licensed under the GNU GPL version 2 or later, as is the rest of 'Rcpp'.
Author: Dirk Eddelbuettel, Romain Francois, Doug Bates, Binxiang Ni, and Conrad Sanderson
Maintainer: Dirk Eddelbuettel <edd@debian.org>

Diff between RcppArmadillo versions 0.12.2.0.0 dated 2023-04-05 and 0.12.4.0.0 dated 2023-05-27

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Package markovmix updated to version 0.1.2 with previous version 0.1.1 dated 2023-04-25

Title: Mixture of Markov Chains with Support of Higher Orders and Multiple Sequences
Description: Fit mixture of Markov chains of higher orders from multiple sequences. It is also compatible with ordinary 1-component, 1-order or single-sequence Markov chains. Various utility functions are provided to derive transition patterns, transition probabilities per component and component priors. In addition, print(), predict() and component extracting/replacing methods are also defined as a convention of mixture models.
Author: Xiurui Zhu [aut, cre]
Maintainer: Xiurui Zhu <zxr6@163.com>

Diff between markovmix versions 0.1.1 dated 2023-04-25 and 0.1.2 dated 2023-05-27

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Package icarus updated to version 0.3.2 with previous version 0.3.1 dated 2019-08-20

Title: Calibrates and Reweights Units in Samples
Description: Provides user-friendly tools for calibration in survey sampling. The package is production-oriented, and its interface is inspired by the famous popular macro 'Calmar' for SAS, so that 'Calmar' users can quickly get used to 'icarus'. In addition to calibration (with linear, raking and logit methods), 'icarus' features functions for calibration on tight bounds and penalized calibration.
Author: Antoine Rebecq [aut, cre]
Maintainer: Antoine Rebecq <antoine.rebecq@m4x.org>

Diff between icarus versions 0.3.1 dated 2019-08-20 and 0.3.2 dated 2023-05-27

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Package chk updated to version 0.9.0 with previous version 0.8.1 dated 2022-08-26

Title: Check User-Supplied Function Arguments
Description: For developers to check user-supplied function arguments. It is designed to be simple, fast and customizable. Error messages follow the tidyverse style guide.
Author: Joe Thorley [aut, cre] , Kirill Mueller [aut] , Ayla Pearson [aut] , Nadine Hussein [ctb] , Evan Amies-Galonski [ctb] , Poisson Consulting [cph, fnd]
Maintainer: Joe Thorley <joe@poissonconsulting.ca>

Diff between chk versions 0.8.1 dated 2022-08-26 and 0.9.0 dated 2023-05-27

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Fri, 26 May 2023

Package distreg.vis updated to version 1.7.4 with previous version 1.7.3 dated 2022-02-07

Title: Framework for the Visualization of Distributional Regression Models
Description: Functions for visualizing distributional regression models fitted using the 'gamlss', 'bamlss' or 'betareg' R package. The core of the package consists of a 'shiny' application, where the model results can be interactively explored and visualized.
Author: Stanislaus Stadlmann [cre, aut]
Maintainer: Stanislaus Stadlmann <stanislaus@stadlmann.cm>

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Package r2rtf updated to version 1.0.3 with previous version 1.0.2 dated 2023-05-01

Title: Easily Create Production-Ready Rich Text Format (RTF) Table and Figure
Description: Create production-ready Rich Text Format (RTF) table and figure with flexible format.
Author: Yilong Zhang [aut, cre], Siruo Wang [aut], Simiao Ye [aut], Fansen Kong [aut], Brian Lang [aut], Nan Xiao [ctb], Madhusudhan Ginnaram [ctb], Ruchitbhai Patel [ctb], Huei-Ling Chen [ctb], Peikun Wu [ctb], Uday Preetham Palukuru [ctb], Daniel Woodie [c [...truncated...]
Maintainer: Yilong Zhang <elong0527@gmail.com>

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Package sos updated to version 2.1-7 with previous version 2.1-4 dated 2022-04-01

Title: Search Contributed R Packages, Sort by Package
Description: Search contributed R packages, sort by package.
Author: Spencer Graves [cre, aut, cph], Sundar Dorai-Raj [aut], and Romain Francois [ctb]
Maintainer: Spencer Graves <spencer.graves@prodsyse.com>

Diff between sos versions 2.1-4 dated 2022-04-01 and 2.1-7 dated 2023-05-26

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Package parallelly updated to version 1.36.0 with previous version 1.35.0 dated 2023-03-22

Title: Enhancing the 'parallel' Package
Description: Utility functions that enhance the 'parallel' package and support the built-in parallel backends of the 'future' package. For example, availableCores() gives the number of CPU cores available to your R process as given by the operating system, 'cgroups' and Linux containers, R options, and environment variables, including those set by job schedulers on high-performance compute clusters. If none is set, it will fall back to parallel::detectCores(). Another example is makeClusterPSOCK(), which is backward compatible with parallel::makePSOCKcluster() while doing a better job in setting up remote cluster workers without the need for configuring the firewall to do port-forwarding to your local computer.
Author: Henrik Bengtsson [aut, cre, cph]
Maintainer: Henrik Bengtsson <henrikb@braju.com>

Diff between parallelly versions 1.35.0 dated 2023-03-22 and 1.36.0 dated 2023-05-26

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Package tidysmd updated to version 0.2.0 with previous version 0.1.1 dated 2022-08-05

Title: Tidy Standardized Mean Differences
Description: Tidy standardized mean differences ('SMDs'). 'tidysmd' uses the 'smd' package to calculate standardized mean differences for variables in a data frame, returning the results in a tidy format.
Author: Malcolm Barrett [aut, cre]
Maintainer: Malcolm Barrett <malcolmbarrett@gmail.com>

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Package spmodel updated to version 0.4.0 with previous version 0.3.0 dated 2023-03-10

Title: Spatial Statistical Modeling and Prediction
Description: Fit, summarize, and predict for a variety of spatial statistical models applied to point-referenced and areal (lattice) data. Parameters are estimated using various methods. Additional modeling features include anisotropy, non-spatial random effects, partition factors, big data approaches, and more. Model-fit statistics are used to summarize, visualize, and compare models. Predictions at unobserved locations are readily obtainable. For additional details, see Dumelle et al. (2023) <doi:10.1371/journal.pone.0282524>.
Author: Michael Dumelle [aut, cre] , Matt Higham [aut], Jay M. Ver Hoef [aut]
Maintainer: Michael Dumelle <Dumelle.Michael@epa.gov>

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Package EFAutilities updated to version 2.1.3 with previous version 2.1.2 dated 2022-08-27

Title: Utility Functions for Exploratory Factor Analysis
Description: A number of utility function for exploratory factor analysis are included in this package. In particular, it computes standard errors for parameter estimates and factor correlations under a variety of conditions.
Author: Guangjian Zhang, Ge Jiang, Minami Hattori, Lauren Trichtinger
Maintainer: Guangjian Zhang <gzhang3@nd.edu>

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Package dipsaus updated to version 0.2.7 with previous version 0.2.6 dated 2023-01-21

Title: A Dipping Sauce for Data Analysis and Visualizations
Description: Works as an "add-on" to packages like 'shiny', 'future', as well as 'rlang', and provides utility functions. Just like dipping sauce adding flavors to potato chips or pita bread, 'dipsaus' for data analysis and visualizations adds handy functions and enhancements to popular packages. The goal is to provide simple solutions that are frequently asked for online, such as how to synchronize 'shiny' inputs without freezing the app, or how to get memory size on 'Linux' or 'MacOS' system. The enhancements roughly fall into these four categories: 1. 'shiny' input widgets; 2. high-performance computing using the 'future' package; 3. modify R calls and convert among numbers, strings, and other objects. 4. utility functions to get system information such like CPU chip-set, memory limit, etc.
Author: Zhengjia Wang [aut, cre], John Magnotti [ctb] , Xiang Zhang [ctb]
Maintainer: Zhengjia Wang <dipterix.wang@gmail.com>

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Package qvcalc updated to version 1.0.3 with previous version 1.0.2 dated 2020-02-15

Title: Quasi Variances for Factor Effects in Statistical Models
Description: Functions to compute quasi variances and associated measures of approximation error.
Author: David Firth
Maintainer: David Firth <d.firth@warwick.ac.uk>

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Package pRecipe updated to version 2.4.0 with previous version 2.3.0 dated 2023-04-08

Title: Precipitation R Recipes
Description: An open-access tool/framework to download, validate, visualize, and analyze multi-source precipitation data across various spatio-temporal scales. Ultimately providing the hydrology science community with the tools for consistent and reproducible analysis regarding precipitation.
Author: Mijael Rodrigo Vargas Godoy [aut, cre] , Yannis Markonis [aut, ths]
Maintainer: Mijael Rodrigo Vargas Godoy <mirovago@gmail.com>

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Package nodbi updated to version 0.9.5 with previous version 0.9.4 dated 2023-05-14

Title: 'NoSQL' Database Connector
Description: Simplified document database access and manipulation, providing a common API across supported 'NoSQL' databases 'Elasticsearch', 'CouchDB', 'MongoDB' as well as 'SQLite/JSON1', 'PostgreSQL', and 'DuckDB'.
Author: Ralf Herold [aut, cre] , Scott Chamberlain [aut] , Rich FitzJohn [aut], Jeroen Ooms [aut]
Maintainer: Ralf Herold <ralf.herold@mailbox.org>

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Package metevalue updated to version 0.2.4 with previous version 0.2.2 dated 2023-05-18

Title: E-Value in the Omics Data Association Studies
Description: In the omics data association studies, it is common to conduct the p-value corrections to control the false significance. Beyond the P-value corrections, E-value is recently studied to facilitate multiple testing correction based on V. Vovk and R. Wang (2021) <doi:10.1214/20-AOS2020>. This package provides E-value calculation for DNA methylation data and RNA-seq data. Currently, five data formats are supported: DNA methylation levels using DMR detection tools (BiSeq, DMRfinder, MethylKit, Metilene and other DNA methylation tools) and RNA-seq data. The relevant references are listed below: Katja Hebestreit and Hans-Ulrich Klein (2022) <doi:10.18129/B9.bioc.BiSeq>; Altuna Akalin et.al (2012) <doi:10.18129/B9.bioc.methylKit>.
Author: Yifan Yang [aut, cre, cph], Xiaoqing Pan [aut], Haoyuan Liu [aut]
Maintainer: Yifan Yang <yfyang.86@hotmail.com>

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Package bspline updated to version 2.2 with previous version 2.1 dated 2022-09-28

Title: B-Spline Interpolation and Regression
Description: Build and use B-splines for interpolation and regression. In case of regression, equality constraints as well as monotonicity and/or positivity of B-spline weights can be imposed. Moreover, knot positions (not only spline weights) can be part of optimized parameters too. For this end, 'bspline' is able to calculate Jacobian of basis vectors as function of knot positions. User is provided with functions calculating spline values at arbitrary points. These functions can be differentiated and integrated to obtain B-splines calculating derivatives/integrals at any point. B-splines of this package can simultaneously operate on a series of curves sharing the same set of knots. 'bspline' is written with concern about computing performance that's why the basis and Jacobian calculation is implemented in C++. The rest is implemented in R but without notable impact on computing speed.
Author: Serguei Sokol <sokol@insa-toulouse.fr>
Maintainer: Serguei Sokol <sokol@insa-toulouse.fr>

Diff between bspline versions 2.1 dated 2022-09-28 and 2.2 dated 2023-05-26

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Package roclang updated to version 0.2.2 with previous version 0.2.1 dated 2023-01-21

Title: Functions for Diffusing Function Documentations into 'Roxygen' Comments
Description: Efficient diffusing of content across function documentations. Sections, parameters or dot parameters are extracted from function documentations and turned into valid Rd character strings, which are ready to diffuse into the 'roxygen' comments of another function by inserting inline code.
Author: Xiurui Zhu [aut, cre]
Maintainer: Xiurui Zhu <zxr6@163.com>

Diff between roclang versions 0.2.1 dated 2023-01-21 and 0.2.2 dated 2023-05-26

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Package gMOIP updated to version 1.5.0 with previous version 1.4.9 dated 2023-02-15

Title: Tools for 2D and 3D Plots of Single and Multi-Objective Linear/Integer Programming Models
Description: Make 2D and 3D plots of linear programming (LP), integer linear programming (ILP), or mixed integer linear programming (MILP) models with up to three objectives. Plots of both the solution and criterion space are possible. For instance the non-dominated (Pareto) set for bi-objective LP/ILP/MILP programming models (see vignettes for an overview). The package also contains an function for checking if a point is inside the convex hull.
Author: Lars Relund Nielsen [aut, cre]
Maintainer: Lars Relund Nielsen <lars@relund.dk>

Diff between gMOIP versions 1.4.9 dated 2023-02-15 and 1.5.0 dated 2023-05-26

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Package GGIRread updated to version 0.2.8 with previous version 0.2.7 dated 2023-05-17

Title: Wearable Accelerometer Data File Readers
Description: Reads data collected from wearable acceleratometers as used in sleep and physical activity research. Currently supports file formats: binary data from 'GENEActiv' <https://activinsights.com/>, binary data from GENEA devices (not for sale), and .cwa-format and .wav-format data from 'Axivity' <https://axivity.com>. Primarily designed to complement R package GGIR <https://CRAN.R-project.org/package=GGIR>.
Author: Vincent T van Hees [aut, cre], Patrick Bos [aut] , Jing Hua Zhao [ctb], Evgeny Mirkes [ctb], Dan Jackson [ctb], Jairo H Migueles [ctb], Medical Research Council UK [cph, fnd], Accelting [cph, fnd]
Maintainer: Vincent T van Hees <v.vanhees@accelting.com>

Diff between GGIRread versions 0.2.7 dated 2023-05-17 and 0.2.8 dated 2023-05-26

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Package cartogram updated to version 0.3.0 with previous version 0.2.2 dated 2020-08-26

Title: Create Cartograms with R
Description: Construct continuous and non-contiguous area cartograms.
Author: Sebastian Jeworutzki [aut, cre] , Timothee Giraud [ctb], Nicolas Lambert [ctb], Roger Bivand [cph], Edzer Pebesma [cph], Jakub Nowosad [ctb]
Maintainer: Sebastian Jeworutzki <sebastian.jeworutzki@ruhr-uni-bochum.de>

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Package parameters updated to version 0.21.1 with previous version 0.21.0 dated 2023-04-19

Title: Processing of Model Parameters
Description: Utilities for processing the parameters of various statistical models. Beyond computing p values, CIs, and other indices for a wide variety of models (see list of supported models using the function 'insight::supported_models()'), this package implements features like bootstrapping or simulating of parameters and models, feature reduction (feature extraction and variable selection) as well as functions to describe data and variable characteristics (e.g. skewness, kurtosis, smoothness or distribution).
Author: Daniel Luedecke [aut, cre] , Dominique Makowski [aut] , Mattan S. Ben-Shachar [aut] , Indrajeet Patil [aut] , Soeren Hoejsgaard [aut], Brenton M. Wiernik [aut] , Zen J. Lau [ctb], Vincent Arel-Bundock [ctb] , Jeffrey Girard [ctb] , Christina Maimone [re [...truncated...]
Maintainer: Daniel Luedecke <d.luedecke@uke.de>

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Package hgwrr updated to version 0.3-0 with previous version 0.2-3 dated 2022-06-15

Title: Hierarchical and Geographically Weighted Regression
Description: This model divides coefficients into three types, i.e., local fixed effects, global fixed effects, and random effects (Hu et al., 2022)<doi:10.1177/23998083211063885>. If data have spatial hierarchical structures (especially are overlapping on some locations), it is worth trying this model to reach better fitness.
Author: Yigong Hu, Richard Harris, Richard Timmerman
Maintainer: Yigong Hu <yigong.hu@bristol.ac.uk>

Diff between hgwrr versions 0.2-3 dated 2022-06-15 and 0.3-0 dated 2023-05-26

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Package ctrdata updated to version 1.13.2 with previous version 1.13.1 dated 2023-05-07

Title: Retrieve and Analyze Clinical Trials in Public Registers
Description: A system for querying, retrieving and analyzing protocol- and results-related information on clinical trials from four public registers, the 'European Union Clinical Trials Register' ('EUCTR', <https://www.clinicaltrialsregister.eu/>), 'ClinicalTrials.gov' ('CTGOV', <https://clinicaltrials.gov/>), the 'ISRCTN' (<http://www.isrctn.com/>) and the 'European Union Clinical Trials Information System' ('CTIS', <https://euclinicaltrials.eu/>). Trial information is downloaded, converted and stored in a database ('PostgreSQL', 'SQLite', 'DuckDB' or 'MongoDB'; via package 'nodbi'). Documents in registers associated with trials can also be downloaded. Functions can identify deduplicated records, easily find and extract variables (fields) of interest even from complex nesting as used by the registers, and to update queries. The package can be used for meta-analysis and trend-analysis of the design and conduct as well as of the results of clinical trials.
Author: Ralf Herold [aut, cre]
Maintainer: Ralf Herold <ralf.herold@mailbox.org>

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Package giscoR updated to version 0.3.4 with previous version 0.3.3 dated 2023-02-16

Title: Download Map Data from GISCO API - Eurostat
Description: Tools to download data from the GISCO (Geographic Information System of the Commission) Eurostat database <https://ec.europa.eu/eurostat/web/gisco>. Global and European map data available. This package is in no way officially related to or endorsed by Eurostat.
Author: Diego Hernangomez [aut, cre, cph] , EuroGeographics [cph] , Vincent Arel-Bundock [cph]
Maintainer: Diego Hernangomez <diego.hernangomezherrero@gmail.com>

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Package WorldFlora updated to version 1.13-2 with previous version 1.13 dated 2023-03-27

Title: Standardize Plant Names According to World Flora Online Taxonomic Backbone
Description: World Flora Online is an online flora of all known plants, available from <http://www.worldfloraonline.org/>. Methods are provided of matching a list of plant names (scientific names, taxonomic names, botanical names) against a static copy of the World Flora Online Taxonomic Backbone data that can be downloaded from the World Flora Online website. The World Flora Online Taxonomic Backbone is an updated version of The Plant List (<http://www.theplantlist.org/>), a working list of plant names that has become static since 2013.
Author: Roeland Kindt [cre, aut]
Maintainer: Roeland Kindt <RoelandCEKindt@gmail.com>

Diff between WorldFlora versions 1.13 dated 2023-03-27 and 1.13-2 dated 2023-05-26

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Package openxlsx2 updated to version 0.7 with previous version 0.6.1 dated 2023-04-21

Title: Read, Write and Edit 'xlsx' Files
Description: Simplifies the creation of 'xlsx' files by providing a high level interface to writing, styling and editing worksheets.
Author: Jordan Mark Barbone [aut] , Jan Marvin Garbuszus [aut, cre], openxlsx authors [cph] , Arseny Kapoulkine [ctb, cph]
Maintainer: Jan Marvin Garbuszus <jan.garbuszus@ruhr-uni-bochum.de>

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Package ggblanket updated to version 2.0.0 with previous version 1.8.0 dated 2023-04-24

Title: Simplify 'ggplot2' Visualisation
Description: Simplify 'ggplot2' visualisation with 'ggblanket' wrapper functions.
Author: David Hodge [aut, cre, cph] , Nik Mitchell [ctb]
Maintainer: David Hodge <davidhodge931@gmail.com>

Diff between ggblanket versions 1.8.0 dated 2023-04-24 and 2.0.0 dated 2023-05-26

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Thu, 25 May 2023

Package Rsagacmd updated to version 0.4.0 with previous version 0.2.0 dated 2022-04-04

Title: Linking R with the Open-Source 'SAGA-GIS' Software
Description: Provides an R scripting interface to the open-source 'SAGA-GIS' (System for Automated Geoscientific Analyses Geographical Information System) software. 'Rsagacmd' dynamically generates R functions for every 'SAGA-GIS' geoprocessing tool based on the user's currently installed 'SAGA-GIS' version. These functions are contained within an S3 object and are accessed as a named list of libraries and tools. This structure facilitates an easier scripting experience by organizing the large number of 'SAGA-GIS' geoprocessing tools (>700) by their respective library. Interactive scripting can fully take advantage of code autocompletion tools (e.g. in 'Rstudio'), allowing for each tools syntax to be quickly recognized. Furthermore, the most common types of spatial data (via the 'terra', 'sp', and 'sf' packages) along with non-spatial data are automatically passed from R to the 'SAGA-GIS' command line tool for geoprocessing operations, and the results are loaded as the appropriate R object. Outp [...truncated...]
Author: Steven Pawley [aut, cre]
Maintainer: Steven Pawley <dr.stevenpawley@gmail.com>

Diff between Rsagacmd versions 0.2.0 dated 2022-04-04 and 0.4.0 dated 2023-05-25

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Package DALEXtra updated to version 2.3.0 with previous version 2.2.1 dated 2022-06-14

Title: Extension for 'DALEX' Package
Description: Provides wrapper of various machine learning models. In applied machine learning, there is a strong belief that we need to strike a balance between interpretability and accuracy. However, in field of the interpretable machine learning, there are more and more new ideas for explaining black-box models, that are implemented in 'R'. 'DALEXtra' creates 'DALEX' Biecek (2018) <arXiv:1806.08915> explainer for many type of models including those created using 'python' 'scikit-learn' and 'keras' libraries, and 'java' 'h2o' library. Important part of the package is Champion-Challenger analysis and innovative approach to model performance across subsets of test data presented in Funnel Plot.
Author: Szymon Maksymiuk [aut, cre] , Przemyslaw Biecek [aut] , Hubert Baniecki [aut], Anna Kozak [ctb]
Maintainer: Szymon Maksymiuk <sz.maksymiuk@gmail.com>

Diff between DALEXtra versions 2.2.1 dated 2022-06-14 and 2.3.0 dated 2023-05-25

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Package nlmixr2est updated to version 2.1.6 with previous version 2.1.5 dated 2023-04-22

Title: Nonlinear Mixed Effects Models in Population PK/PD, Estimation Routines
Description: Fit and compare nonlinear mixed-effects models in differential equations with flexible dosing information commonly seen in pharmacokinetics and pharmacodynamics (Almquist, Leander, and Jirstrand 2015 <doi:10.1007/s10928-015-9409-1>). Differential equation solving is by compiled C code provided in the 'rxode2' package (Wang, Hallow, and James 2015 <doi:10.1002/psp4.12052>).
Author: Matthew Fidler [aut, cre] , Yuan Xiong [aut], Rik Schoemaker [aut] , Justin Wilkins [aut] , Wenping Wang [aut], Robert Leary [ctb], Mason McComb [ctb] , Vipul Mann [aut], Mirjam Trame [ctb], Mahmoud Abdelwahab [ctb], Teun Post [ctb], Richard Hooijmai [...truncated...]
Maintainer: Matthew Fidler <matt.fidler@novartis.com>

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Package h2o updated to version 3.40.0.4 with previous version 3.40.0.1 dated 2023-02-24

Title: R Interface for the 'H2O' Scalable Machine Learning Platform
Description: R interface for 'H2O', the scalable open source machine learning platform that offers parallelized implementations of many supervised and unsupervised machine learning algorithms such as Generalized Linear Models (GLM), Gradient Boosting Machines (including XGBoost), Random Forests, Deep Neural Networks (Deep Learning), Stacked Ensembles, Naive Bayes, Generalized Additive Models (GAM), ANOVA GLM, Cox Proportional Hazards, K-Means, PCA, ModelSelection, Word2Vec, as well as a fully automatic machine learning algorithm (H2O AutoML).
Author: Tomas Fryda [aut, cre], Erin LeDell [aut], Navdeep Gill [aut], Spencer Aiello [aut], Anqi Fu [aut], Arno Candel [aut], Cliff Click [aut], Tom Kraljevic [aut], Tomas Nykodym [aut], Patrick Aboyoun [aut], Michal Kurka [aut], Michal Malohlava [aut], Seb [...truncated...]
Maintainer: Tomas Fryda <tomas.fryda@h2o.ai>

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Package async updated to version 0.3.2 with previous version 0.3.1 dated 2023-03-22

Title: Coroutines: Generators / Yield, Async / Await, and Streams
Description: Write sequential-looking code that pauses and resumes. gen() creates a generator, an iterator that returns a value and pauses each time it reaches a yield() call. async() creates a promise, which runs until it reaches a call to await(), then resumes when information is available. These work similarly to generator and async constructs from 'Python' or 'JavaScript'. Objects produced are compatible with the 'iterators' and 'promises' packages. Version 0.3 supports on.exit, single-step debugging, stream() for making asynchronous iterators, and delimited goto() in switch() calls.
Author: Peter Meilstrup [aut, cre]
Maintainer: Peter Meilstrup <peter.meilstrup@gmail.com>

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Package CausalGPS updated to version 0.4.0 with previous version 0.3.1 dated 2023-05-16

Title: Matching on Generalized Propensity Scores with Continuous Exposures
Description: Provides a framework for estimating causal effects of a continuous exposure using observational data, and implementing matching and weighting on the generalized propensity score. Wu, X., Mealli, F., Kioumourtzoglou, M.A., Dominici, F. and Braun, D., 2022. Matching on generalized propensity scores with continuous exposures. Journal of the American Statistical Association, pp.1-29.
Author: Naeem Khoshnevis [aut, cre] , Xiao Wu [aut] , Danielle Braun [aut]
Maintainer: Naeem Khoshnevis <nkhoshnevis@g.harvard.edu>

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Package tidyBdE updated to version 0.3.3 with previous version 0.3.2 dated 2023-04-01

Title: Download Data from Bank of Spain
Description: Tools to download data series from 'Banco de España' ('BdE') on 'tibble' format. 'Banco de España' is the national central bank and, within the framework of the Single Supervisory Mechanism ('SSM'), the supervisor of the Spanish banking system along with the European Central Bank. This package is in no way sponsored endorsed or administered by 'Banco de España'.
Author: Diego H. Herrero [aut, cre, cph]
Maintainer: Diego H. Herrero <dev.dieghernan@gmail.com>

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Package Statamarkdown updated to version 0.7.4 with previous version 0.7.2 dated 2023-02-15

Title: 'Stata' Markdown
Description: Settings and functions to extend the 'knitr' 'Stata' engine.
Author: Doug Hemken [aut, cre] , Tom Palmer [ctb] , Philipp Lepert [ctb]
Maintainer: Doug Hemken <dehemken@wisc.edu>

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Package climaemet updated to version 1.1.1 with previous version 1.1.0 dated 2023-02-16

Title: Climate AEMET Tools
Description: Tools to download the climatic data of the Spanish Meteorological Agency (AEMET) directly from R using their API and create scientific graphs (climate charts, trend analysis of climate time series, temperature and precipitation anomalies maps, warming stripes graphics, climatograms, etc.).
Author: Manuel Pizarro [aut, cph] , Diego Hernangomez [aut, cre] , Gema Fernandez-Aviles [aut]
Maintainer: Diego Hernangomez <diego.hernangomezherrero@gmail.com>

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Package SimDesign updated to version 2.11 with previous version 2.10.1 dated 2023-02-01

Title: Structure for Organizing Monte Carlo Simulation Designs
Description: Provides tools to safely and efficiently organize and execute Monte Carlo simulation experiments in R. The package controls the structure and back-end of Monte Carlo simulation experiments by utilizing a generate-analyse-summarise workflow. The workflow safeguards against common simulation coding issues, such as automatically re-simulating non-convergent results, prevents inadvertently overwriting simulation files, catches error and warning messages during execution, and implicitly supports parallel processing. For a pedagogical introduction to the package see Sigal and Chalmers (2016) <doi:10.1080/10691898.2016.1246953>. For a more in-depth overview of the package and its design philosophy see Chalmers and Adkins (2020) <doi:10.20982/tqmp.16.4.p248>.
Author: Phil Chalmers [aut, cre] , Matthew Sigal [ctb], Ogreden Oguzhan [ctb]
Maintainer: Phil Chalmers <rphilip.chalmers@gmail.com>

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Package rtables updated to version 0.6.1 with previous version 0.6.0 dated 2023-03-02

Title: Reporting Tables
Description: Reporting tables often have structure that goes beyond simple rectangular data. The 'rtables' package provides a framework for declaring complex multi-level tabulations and then applying them to data. This framework models both tabulation and the resulting tables as hierarchical, tree-like objects which support sibling sub-tables, arbitrary splitting or grouping of data in row and column dimensions, cells containing multiple values, and the concept of contextual summary computations. A convenient pipe-able interface is provided for declaring table layouts and the corresponding computations, and then applying them to data.
Author: Gabriel Becker [aut, cre], Adrian Waddell [aut], Daniel Sabanes Bove [ctb], Maximilian Mordig [ctb], Davide Garolini [ctb]
Maintainer: Gabriel Becker <gabembecker@gmail.com>

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Package rlistings updated to version 0.2.2 with previous version 0.2.1 dated 2023-03-17

Title: Clinical Trial Style Data Readout Listings
Description: Listings are often part of the submission of clinical trial data in regulatory settings. We provide a framework for the specific formatting features often used when displaying large datasets in that context.
Author: Gabriel Becker [aut, cre], Adrian Waddell [aut], Joe Zhu [aut], Davide Garolini [ctb], Emily de la Rua [ctb], Abinaya Yogasekaram [ctb], F. Hoffmann-La Roche AG [cph, fnd]
Maintainer: Gabriel Becker <gabembecker@gmail.com>

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Package FedData updated to version 3.0.4 with previous version 3.0.3 dated 2023-03-10

Title: Functions to Automate Downloading Geospatial Data Available from Several Federated Data Sources
Description: Functions to automate downloading geospatial data available from several federated data sources (mainly sources maintained by the US Federal government). Currently, the package enables extraction from seven datasets: The National Elevation Dataset digital elevation models (1 and 1/3 arc-second; USGS); The National Hydrography Dataset (USGS); The Soil Survey Geographic (SSURGO) database from the National Cooperative Soil Survey (NCSS), which is led by the Natural Resources Conservation Service (NRCS) under the USDA; the Global Historical Climatology Network (GHCN), coordinated by National Climatic Data Center at NOAA; the Daymet gridded estimates of daily weather parameters for North America, version 3, available from the Oak Ridge National Laboratory's Distributed Active Archive Center (DAAC); the International Tree Ring Data Bank; and the National Land Cover Database (NLCD).
Author: R. Kyle Bocinsky [aut, cre, cph], Dylan Beaudette [ctb], Scott Chamberlain [ctb, rev], Jeffrey Hollister [ctb], Julia Gustavsen [rev]
Maintainer: R. Kyle Bocinsky <bocinsky@gmail.com>

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Package treemap updated to version 2.4-4 with previous version 2.4-3 dated 2021-08-22

Title: Treemap Visualization
Description: A treemap is a space-filling visualization of hierarchical structures. This package offers great flexibility to draw treemaps.
Author: Martijn Tennekes [aut, cre], Peter Ellis [ctb]
Maintainer: Martijn Tennekes <mtennekes@gmail.com>

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Package spatialreg updated to version 1.2-9 with previous version 1.2-8 dated 2023-03-01

Title: Spatial Regression Analysis
Description: A collection of all the estimation functions for spatial cross-sectional models (on lattice/areal data using spatial weights matrices) contained up to now in 'spdep'. These model fitting functions include maximum likelihood methods for cross-sectional models proposed by 'Cliff' and 'Ord' (1973, ISBN:0850860369) and (1981, ISBN:0850860814), fitting methods initially described by 'Ord' (1975) <doi:10.1080/01621459.1975.10480272>. The models are further described by 'Anselin' (1988) <doi:10.1007/978-94-015-7799-1>. Spatial two stage least squares and spatial general method of moment models initially proposed by 'Kelejian' and 'Prucha' (1998) <doi:10.1023/A:1007707430416> and (1999) <doi:10.1111/1468-2354.00027> are provided. Impact methods and MCMC fitting methods proposed by 'LeSage' and 'Pace' (2009) <doi:10.1201/9781420064254> are implemented for the family of cross-sectional spatial regression models. Methods for fitting the log determinant term in maximu [...truncated...]
Author: Roger Bivand [cre, aut] , Gianfranco Piras [aut], Luc Anselin [ctb], Andrew Bernat [ctb], Eric Blankmeyer [ctb], Yongwan Chun [ctb], Virgilio Gomez-Rubio [ctb], Daniel Griffith [ctb], Martin Gubri [ctb], Rein Halbersma [ctb], James LeSage [ctb], Ange [...truncated...]
Maintainer: Roger Bivand <Roger.Bivand@nhh.no>

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Package quantregGrowth updated to version 1.6-2 with previous version 1.6-1 dated 2023-04-14

Title: Non-Crossing Additive Regression Quantiles and Non-Parametric Growth Charts
Description: Fits non-crossing regression quantiles as a function of linear covariates and multiple smooth terms, including varying coefficients, via B-splines with L1-norm difference penalties. Random intercepts and variable selection are allowed via the lasso penalties. The smoothing parameters are estimated as part of the model fitting, see Muggeo and others (2021) <doi:10.1177/1471082X20929802>. Monotonicity and concavity constraints on the fitted curves are allowed, see Muggeo and others (2013) <doi:10.1007/s10651-012-0232-1>, and also <doi:10.13140/RG.2.2.12924.85122> or <doi:10.13140/RG.2.2.29306.21445> some code examples.
Author: Vito M. R. Muggeo [aut, cre]
Maintainer: Vito M. R. Muggeo <vito.muggeo@unipa.it>

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Package cropgrowdays updated to version 0.2.0 with previous version 0.1.1 dated 2021-12-10

Title: Crop Growing Degree Days and Agrometeorological Calculations
Description: Calculate agrometeorological variables for crops including growing degree days (McMaster, GS & Wilhelm, WW (1997) <doi:10.1016/S0168-1923(97)00027-0>), cumulative rainfall, number of stress days and cumulative or mean radiation and evaporation. Convert dates to day of year and vice versa. Also, download curated and interpolated Australian weather data from the Queensland Government DES longpaddock website <https://www.longpaddock.qld.gov.au/>. This data is freely available under the Creative Commons 4.0 licence.
Author: Peter Baker [aut, cre] , Miranda Mortlock [aut]
Maintainer: Peter Baker <drpetebaker@gmail.com>

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Package cotram updated to version 0.4-4 with previous version 0.4-2 dated 2022-11-01

Title: Count Transformation Models
Description: Count transformation models featuring parameters interpretable as discrete hazard ratios, odds ratios, reverse-time discrete hazard ratios, or transformed expectations. An appropriate data transformation for a count outcome and regression coefficients are simultaneously estimated by maximising the exact discrete log-likelihood using the computational framework provided in package 'mlt', technical details are given in Siegfried & Hothorn (2020) <DOI:10.1111/2041-210X.13383>. The package also contains an experimental implementation of multivariate count transformation models with an application to multi-species distribution models <arXiv:2201.13095>.
Author: Sandra Siegfried [aut, cre] , Luisa Barbanti [aut] , Torsten Hothorn [aut]
Maintainer: Sandra Siegfried <sandra.siegfried@uzh.ch>

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Package baytrends updated to version 2.0.9 with previous version 2.0.8 dated 2022-05-05

Title: Long Term Water Quality Trend Analysis
Description: Enable users to evaluate long-term trends using a Generalized Additive Modeling (GAM) approach. The model development includes selecting a GAM structure to describe nonlinear seasonally-varying changes over time, incorporation of hydrologic variability via either a river flow or salinity, the use of an intervention to deal with method or laboratory changes suspected to impact data values, and representation of left- and interval-censored data. The approach has been applied to water quality data in the Chesapeake Bay, a major estuary on the east coast of the United States to provide insights to a range of management- and research-focused questions. Methodology described in Murphy (2019) <doi:10.1016/j.envsoft.2019.03.027>.
Author: Rebecca Murphy, Elgin Perry, Jennifer Keisman, Jon Harcum, Erik W Leppo
Maintainer: Erik W Leppo <Erik.Leppo@tetratech.com>

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Package ubms updated to version 1.2.4 with previous version 1.2.3 dated 2023-05-17

Title: Bayesian Models for Data from Unmarked Animals using 'Stan'
Description: Fit Bayesian hierarchical models of animal abundance and occurrence via the 'rstan' package, the R interface to the 'Stan' C++ library. Supported models include single-season occupancy, dynamic occupancy, and N-mixture abundance models. Covariates on model parameters are specified using a formula-based interface similar to package 'unmarked', while also allowing for estimation of random slope and intercept terms. References: Carpenter et al. (2017) <doi:10.18637/jss.v076.i01>; Fiske and Chandler (2011) <doi:10.18637/jss.v043.i10>.
Author: Ken Kellner [cre, aut]
Maintainer: Ken Kellner <contact@kenkellner.com>

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Package DIMORA updated to version 0.3.5 with previous version 0.3.4 dated 2023-03-11

Title: Diffusion Models R Analysis
Description: The implemented methods are: Standard Bass model, Generalized Bass model (with rectangular shock, exponential shock, and mixed shock. You can choose to add from 1 to 3 shocks), Guseo-Guidolin model and Variable Potential Market model, and UCRCD model. The Bass model consists of a simple differential equation that describes the process of how new products get adopted in a population, the Generalized Bass model is a generalization of the Bass model in which there is a "carrier" function x(t) that allows to change the speed of time sliding. In some real processes the reachable potential of the resource available in a temporal instant may appear to be not constant over time, because of this we use Variable Potential Market model, in which the Guseo-Guidolin has a particular specification for the market function. The UCRCD model (Unbalanced Competition and Regime Change Diachronic) is a diffusion model used to capture the dynamics of the competitive or collaborative transition.
Author: Savio Andrea, Zanghi Federico, Filippo Ziliotto, Bessi Alessandro
Maintainer: Savio Andrea <svandr97@gmail.com>

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Package microeco updated to version 0.19.0 with previous version 0.17.0 dated 2023-05-02

Title: Microbial Community Ecology Data Analysis
Description: A series of statistical and plotting approaches in microbial community ecology based on the R6 class. The classes are designed for data preprocessing, taxa abundance plotting, alpha diversity analysis, beta diversity analysis, differential abundance test, null model analysis, network analysis, machine learning, environmental data analysis and functional analysis.
Author: Chi Liu [aut, cre], Felipe R. P. Mansoldo [ctb], Umer Zeeshan Ijaz [ctb], Chenhao Li [ctb], Yang Cao [ctb], Minjie Yao [ctb], Xiangzhen Li [ctb]
Maintainer: Chi Liu <liuchi0426@126.com>

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Package eks updated to version 1.0.4 with previous version 1.0.3 dated 2023-03-09

Title: Tidy and Geospatial Kernel Smoothing
Description: Extensions of the kernel smoothing functions from the 'ks' package for compatibility with the tidyverse and geospatial ecosystems <doi:10.48550/arXiv.2203.01686>.
Author: Tarn Duong [aut, cre]
Maintainer: Tarn Duong <tarn.duong@gmail.com>

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Package Bernadette updated to version 1.1.2 with previous version 1.1.1 dated 2023-05-18

Title: Bayesian Inference and Model Selection for Stochastic Epidemics
Description: Bayesian analysis for stochastic extensions of non-linear dynamic systems using advanced computational algorithms. Described in Bouranis, L., Demiris, N., Kalogeropoulos, K., and Ntzoufras, I. (2022) <arXiv:2211.15229>.
Author: Lampros Bouranis [aut, cre, cph] , European Union [fnd]
Maintainer: Lampros Bouranis <bernadette.aueb@gmail.com>

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Package rSPDE updated to version 2.3.1 with previous version 2.2.0 dated 2023-04-12

Title: Rational Approximations of Fractional Stochastic Partial Differential Equations
Description: Functions that compute rational approximations of fractional elliptic stochastic partial differential equations. The package also contains functions for common statistical usage of these approximations. The main references for rSPDE are Bolin, Simas and Xiong (2023) <doi:10.48550/arXiv.2209.04670> for the covariance-based method and in Bolin and Kirchner (2020) <doi:10.1080/10618600.2019.1665537> for the operator-based rational approximation. These can be generated by the citation function in R.
Author: David Bolin [cre, aut], Alexandre Simas [aut], Finn Lindgren [ctb]
Maintainer: David Bolin <davidbolin@gmail.com>

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Package timeSeries updated to version 4030.106 with previous version 4021.105 dated 2022-10-15

Title: Financial Time Series Objects (Rmetrics)
Description: 'S4' classes and various tools for financial time series: Basic functions such as scaling and sorting, subsetting, mathematical operations and statistical functions.
Author: Diethelm Wuertz [aut] , Tobias Setz [aut], Yohan Chalabi [aut], Martin Maechler [ctb] , Georgi N. Boshnakov [cre, ctb]
Maintainer: Georgi N. Boshnakov <georgi.boshnakov@manchester.ac.uk>

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Package R2BEAT updated to version 1.0.5 with previous version 1.0.4 dated 2021-12-02

Title: Multistage Sampling Allocation and Sample Selection
Description: Multivariate optimal allocation for different domains in one and two stages stratified sample design. 'R2BEAT' extends the Neyman (1934) – Tschuprow (1923) allocation method to the case of several variables, adopting a generalization of the Bethel’s proposal (1989). 'R2BEAT' develops this methodology but, moreover, it allows to determine the sample allocation in the multivariate and multi-domains case of estimates for two-stage stratified samples. It also allows to perform both Primary Stage Units and Secondary Stage Units selection. This package requires the availability of 'ReGenesees', that can be installed from <https://github.com/DiegoZardetto/ReGenesees>.
Author: Andrea Fasulo,Giulio Barcaroli,Stefano Falorsi,Alessio Guandalini,Daniela Pagliuca,Marco Dionisio Terribili
Maintainer: Andrea Fasulo <fasulo@istat.it>

Diff between R2BEAT versions 1.0.4 dated 2021-12-02 and 1.0.5 dated 2023-05-25

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Package pedtools updated to version 2.2.0 with previous version 2.1.1 dated 2023-01-05

Title: Creating and Working with Pedigrees and Marker Data
Description: A comprehensive collection of tools for creating, manipulating and visualising pedigrees and genetic marker data. Pedigrees can be read from text files or created on the fly with built-in functions. A range of utilities enable modifications like adding or removing individuals, breaking loops, and merging pedigrees. An online tool for creating pedigrees interactively, based on 'pedtools', is available at <https://magnusdv.shinyapps.io/quickped>. 'pedtools' is the hub of the 'ped suite', a collection of packages for pedigree analysis. A detailed presentation of the 'ped suite' is given in the book 'Pedigree Analysis in R' (Vigeland, 2021, ISBN:9780128244302).
Author: Magnus Dehli Vigeland [aut, cre]
Maintainer: Magnus Dehli Vigeland <m.d.vigeland@medisin.uio.no>

Diff between pedtools versions 2.1.1 dated 2023-01-05 and 2.2.0 dated 2023-05-25

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Package FunChisq updated to version 2.5.3 with previous version 2.5.2 dated 2021-05-19

Title: Model-Free Functional Chi-Squared and Exact Tests
Description: Statistical hypothesis testing methods for inferring model-free functional dependency using asymptotic chi-squared or exact distributions. Functional test statistics are asymmetric and functionally optimal, unique from other related statistics. Tests in this package reveal evidence for causality based on the causality-by- functionality principle. They include asymptotic functional chi-squared tests (Zhang & Song 2013) <arXiv:1311.2707>, an adapted functional chi-squared test (Kumar & Song 2022) <doi:10.1093/bioinformatics/btac206>, and an exact functional test (Zhong & Song 2019) <doi:10.1109/TCBB.2018.2809743> (Nguyen et al. 2020) <doi:10.24963/ijcai.2020/372>. The normalized functional chi-squared test was used by Best Performer 'NMSUSongLab' in HPN-DREAM (DREAM8) Breast Cancer Network Inference Challenges (Hill et al. 2016) <doi:10.1038/nmeth.3773>. A function index (Zhong & Song 2019) <doi:10.1186/s12920-019-0565-9> (Kumar et al. [...truncated...]
Author: Yang Zhang [aut], Hua Zhong [aut] , Hien Nguyen [aut] , Ruby Sharma [aut] , Sajal Kumar [aut] , Yiyi Li [aut], Joe Song [aut, cre]
Maintainer: Joe Song <joemsong@cs.nmsu.edu>

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Package fdacluster updated to version 0.2.2 with previous version 0.2.1 dated 2023-05-19

Title: Joint Clustering and Alignment of Functional Data
Description: Implementations of the k-means, hierarchical agglomerative and DBSCAN clustering methods for functional data which allows for jointly aligning and clustering curves. It supports functional data defined on one-dimensional domains but possibly evaluating in multivariate codomains. It supports functional data defined in arrays but also via the 'fd' and 'funData' classes for functional data defined in the 'fda' and 'funData' packages respectively. It currently supports shift, dilation and affine warping functions for functional data defined on the real line and uses the SRSF framework to handle boundary-preserving warping for functional data defined on a specific interval. Main reference for the k-means algorithm: Sangalli L.M., Secchi P., Vantini S., Vitelli V. (2010) "k-mean alignment for curve clustering" <doi:10.1016/j.csda.2009.12.008>. Main reference for the SRSF framework: Tucker, J. D., Wu, W., & Srivastava, A. (2013) "Generative models for functional data using phase and [...truncated...]
Author: Aymeric Stamm [aut, cre] , Laura Sangalli [ctb], Piercesare Secchi [ctb], Simone Vantini [ctb], Valeria Vitelli [ctb], Alessandro Zito [ctb]
Maintainer: Aymeric Stamm <aymeric.stamm@cnrs.fr>

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Package BNSP updated to version 2.2.3 with previous version 2.2.2 dated 2023-03-26

Title: Bayesian Non- And Semi-Parametric Model Fitting
Description: MCMC algorithms & processing functions for: 1. single response multiple regression, see Papageorgiou, G. (2018) <doi: 10.32614/RJ-2018-069>, 2. multivariate response multiple regression, with nonparametric models for the means, the variances and the correlation matrix, with variable selection, see Papageorgiou, G. and Marshall, B. C. (2020) <doi: 10.1080/10618600.2020.1739534>, 3. joint mean-covariance models for multivariate responses, see Papageorgiou, G. (2022) <doi: 10.1002/sim.9376>, and 4.Dirichlet process mixtures, see Papageorgiou, G. (2019) <doi: 10.1111/anzs.12273>.
Author: Georgios Papageorgiou
Maintainer: Georgios Papageorgiou <gpapageo@gmail.com>

Diff between BNSP versions 2.2.2 dated 2023-03-26 and 2.2.3 dated 2023-05-25

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Package ufs updated to version 0.5.6 with previous version 0.5.2 dated 2021-11-13

Title: A Collection of Utilities
Description: This is a new version of the 'userfriendlyscience' package, which has grown a bit unwieldy. Therefore, distinct functionalities are being 'consciously uncoupled' into different packages. This package contains the general-purpose tools and utilities (see the 'behaviorchange' package, the 'rosetta' package, and the soon-to-be-released 'scd' package for other functionality), and is the most direct 'successor' of the original 'userfriendlyscience' package. For example, this package contains a number of basic functions to create higher level plots, such as diamond plots, to easily plot sampling distributions, to generate confidence intervals, to plan study sample sizes for confidence intervals, and to do some basic operations such as (dis)attenuate effect size estimates.
Author: Gjalt-Jorn Peters [aut, cre] , Stefan Gruijters [ctb]
Maintainer: Gjalt-Jorn Peters <ufs@opens.science>

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Package SQL updated to version 0.1.1 with previous version 0.1.0 dated 2023-04-27

Title: Executes 'SQL' Statements
Description: Runs 'SQL' statements on in-memory data frames within a temporary in-memory 'duckdb' data base.
Author: Jean-Luc Lipatz [aut, cre, cph]
Maintainer: Jean-Luc Lipatz <jllipatz@protonmail.com>

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Package ORKM updated to version 0.7.0.0 with previous version 0.6.0.0 dated 2023-05-06

Title: The Online Regularized K-Means Clustering Algorithm
Description: Algorithm of online regularized k-means to deal with online multi(single) view data. The philosophy of the package is described in Guo G. (2020) <doi:10.1080/02331888.2020.1823979>.
Author: Guangbao Guo [aut, cre] , Miao Yu [aut], Haoyue Song [aut], Ruiling Niu [aut]
Maintainer: Guangbao Guo <ggb11111111@163.com>

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Package knitr updated to version 1.43 with previous version 1.42 dated 2023-01-25

Title: A General-Purpose Package for Dynamic Report Generation in R
Description: Provides a general-purpose tool for dynamic report generation in R using Literate Programming techniques.
Author: Yihui Xie [aut, cre] , Abhraneel Sarma [ctb], Adam Vogt [ctb], Alastair Andrew [ctb], Alex Zvoleff [ctb], Amar Al-Zubaidi [ctb], Andre Simon [ctb] , Aron Atkins [ctb], Aaron Wolen [ctb], Ashley Manton [ctb], Atsushi Yasumoto [ctb] , Ben Baumer [ctb], [...truncated...]
Maintainer: Yihui Xie <xie@yihui.name>

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Package forestat updated to version 1.0.1 with previous version 1.0.0 dated 2023-05-22

Title: Evaluating the Quality of Natural Forest
Description: Including tree height classification, tree height model establishment, sectional area growth and stock growth modeling, and calculation of actual and potential forest productivity.
Author: Liyong Fu [aut], Shirong Liu [aut], Shouzheng Tang [aut], Guangshuang Duan [aut], Zhong Wang [aut], Linyan Feng [aut], Dongbo Xie [aut], Yuanyuan Han [aut, cre]
Maintainer: Yuanyuan Han <jackhanyuan@foxmail.com>

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Package qlcal updated to version 0.0.6 with previous version 0.0.5 dated 2023-04-20

Title: R Bindings to the Calendaring Functionality of 'QuantLib'
Description: 'QuantLib' bindings are provided for R using 'Rcpp' via an evolved version of the initial header-only 'Quantuccia' project offering an subset of 'QuantLib' (now maintained separately just for the calendaring subset). See the included file 'AUTHORS' for a full list of contributors to 'QuantLib' (and hence also 'Quantuccia').
Author: Dirk Eddelbuettel; the authors and contributors of QuantLib
Maintainer: Dirk Eddelbuettel <edd@debian.org>

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Package multiocc updated to version 0.2.0 with previous version 0.1.0 dated 2022-07-15

Title: Fits Multivariate Spatio-Temporal Occupancy Model
Description: Spatio-temporal multivariate occupancy models can handle multiple species in occupancy models. This method for fitting such models is described in Hepler and Erhardt (2021) "A spatiotemporal model for multivariate occupancy data" <https://onlinelibrary.wiley.com/doi/abs/10.1002/env.2657>.
Author: Staci Hepler [aut, cre], Rob Erhardt [aut]
Maintainer: Staci Hepler <heplersa@wfu.edu>

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Package LKT updated to version 1.5.0 with previous version 1.3.0 dated 2022-10-10

Title: Logistic Knowledge Tracing
Description: Computes Logistic Knowledge Tracing ('LKT') which is a general method for tracking human learning in an educational software system. Please see Pavlik, Eglington, and Harrel-Williams (2021) <https://ieeexplore.ieee.org/document/9616435>. 'LKT' is a method to compute features of student data that are used as predictors of subsequent performance. 'LKT' allows great flexibility in the choice of predictive components and features computed for these predictive components. The system is built on top of 'LiblineaR', which enables extremely fast solutions compared to base glm() in R.
Author: Philip I. Pavlik Jr. [aut, ctb, cre] , Luke G. Eglington [aut, ctb]
Maintainer: Philip I. Pavlik Jr. <imrryr@gmail.com>

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Package HDSpatialScan updated to version 1.0.4 with previous version 1.0.3 dated 2022-08-05

Title: Multivariate and Functional Spatial Scan Statistics
Description: Allows to detect spatial clusters of abnormal values on multivariate or functional data. Martin KULLDORFF and Lan HUANG and Kevin KONTY (2009) <doi:10.1186/1476-072X-8-58>, Inkyung JUNG and Ho Jin CHO (2015) <doi:10.1186/s12942-015-0024-6>, Lionel CUCALA and Michael GENIN and Caroline LANIER and Florent OCCELLI (2017) <doi:10.1016/j.spasta.2017.06.001>, Lionel CUCALA and Michael GENIN and Florent OCCELLI and Julien SOULA (2019) <doi:10.1016/j.spasta.2018.10.002>, Camille FREVENT and Mohamed-Salem AHMED and Matthieu MARBAC and Michael GENIN (2021) <doi:10.1016/j.spasta.2021.100550>, Zaineb SMIDA and Lionel CUCALA and Ali GANNOUN and Ghislain Durif (2022) <doi:10.1016/j.csda.2021.107378>, Camille FREVENT and Mohamed-Salem AHMED and Sophie DABO-NIANG and Michael GENIN (2023) <doi:10.1093/jrsssc/qlad017>.
Author: Camille FREVENT [aut, cre, cph], Mohamed-Salem AHMED [aut], Julien SOULA [aut], Zaineb SMIDA [aut], Lionel CUCALA [aut], Sophie DABO-NIANG [aut], Michael GENIN [aut]
Maintainer: Camille FREVENT <camille.frevent@univ-lille.fr>

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Package ggnewscale updated to version 0.4.9 with previous version 0.4.8 dated 2022-10-06

Title: Multiple Fill and Colour Scales in 'ggplot2'
Description: Use multiple fill and colour scales in 'ggplot2'.
Author: Elio Campitelli [cre, aut]
Maintainer: Elio Campitelli <elio.campitelli@cima.fcen.uba.ar>

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Package gasmodel updated to version 0.3.0 with previous version 0.2.0 dated 2023-01-06

Title: Generalized Autoregressive Score Models
Description: Estimation, forecasting, and simulation of generalized autoregressive score (GAS) models of Creal, Koopman, and Lucas (2013) <doi:10.1002/jae.1279> and Harvey (2013) <doi:10.1017/cbo9781139540933>. Model specification allows for various conditional distributions, different parametrizations, exogenous variables, joint and separate modeling of exogenous variables and dynamics,higher score and autoregressive orders, custom and unconditional initial values of time-varying parameters, fixed and bounded values of coefficients, and missing values. Model estimation is performed by the maximum likelihood method and the Hessian matrix.
Author: Vladimir Holy [aut, cre]
Maintainer: Vladimir Holy <vladimir.holy@vse.cz>

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Package formatters updated to version 0.5.0 with previous version 0.4.1 dated 2023-04-14

Title: ASCII Formatting for Values and Tables
Description: We provide a framework for rendering complex tables to ASCII, and a set of formatters for transforming values or sets of values into ASCII-ready display strings.
Author: Gabriel Becker [aut, cre], Adrian Waddell [aut], Davide Garolini [ctb], F. Hoffmann-La Roche AG [cph, fnd]
Maintainer: Gabriel Becker <gabembecker@gmail.com>

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Package covid19.analytics updated to version 2.1.3.1 with previous version 2.1.3 dated 2022-08-18

Title: Load and Analyze Live Data from the COVID-19 Pandemic
Description: Load and analyze updated time series worldwide data of reported cases for the Novel Coronavirus Disease (COVID-19) from different sources, including the Johns Hopkins University Center for Systems Science and Engineering (JHU CSSE) data repository <https://github.com/CSSEGISandData/COVID-19>, "Our World in Data" <https://github.com/owid/> among several others. The datasets reporting the COVID-19 cases are available in two main modalities, as a time series sequences and aggregated data for the last day with greater spatial resolution. Several analysis, visualization and modelling functions are available in the package that will allow the user to compute and visualize total number of cases, total number of changes and growth rate globally or for an specific geographical location, while at the same time generating models using these trends; generate interactive visualizations and generate Susceptible-Infected-Recovered (SIR) model for the disease spread.
Author: Marcelo Ponce [aut, cre], Amit Sandhel [ctb]
Maintainer: Marcelo Ponce <m.ponce@utoronto.ca>

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Package arulesSequences updated to version 0.2-30 with previous version 0.2-29 dated 2023-05-18

Title: Mining Frequent Sequences
Description: Add-on for arules to handle and mine frequent sequences. Provides interfaces to the C++ implementation of cSPADE by Mohammed J. Zaki.
Author: Christian Buchta and Michael Hahsler, with contributions from Daniel Diaz
Maintainer: Christian Buchta <christian.buchta@wu.ac.at>

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Wed, 24 May 2023

Package Rwhois updated to version 1.0.14 with previous version 1.0.12 dated 2022-07-13

Title: WHOIS Server Querying
Description: Queries data from WHOIS servers.
Author: Brad Cable
Maintainer: Brad Cable <brad@bcable.net>

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Package EBglmnet updated to version 6.0 with previous version 5.3 dated 2023-05-13

Title: Empirical Bayesian Lasso and Elastic Net Methods for Generalized Linear Models
Description: Provides empirical Bayesian lasso and elastic net algorithms for variable selection and effect estimation. Key features include sparse variable selection and effect estimation via generalized linear regression models, high dimensionality with p>>n, and significance test for nonzero effects. This package outperforms other popular methods such as lasso and elastic net methods in terms of power of detection, false discovery rate, and power of detecting grouping effects. Please reference its use as A Huang and D Liu (2016) <doi: 10.1093/bioinformatics/btw143>.
Author: Anhui Huang, Dianting Liu
Maintainer: Anhui Huang <anhuihuang@gmail.com>

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Package learnr updated to version 0.11.4 with previous version 0.11.3 dated 2023-03-15

Title: Interactive Tutorials for R
Description: Create interactive tutorials using R Markdown. Use a combination of narrative, figures, videos, exercises, and quizzes to create self-paced tutorials for learning about R and R packages.
Author: Garrick Aden-Buie [aut, cre] , Barret Schloerke [aut] , JJ Allaire [aut, ccp], Alexander Rossell Hayes [aut] , Nischal Shrestha [ctb] , Angela Li [ctb] , Posit, PBC [cph, fnd], Ajax.org B.V. [ctb, cph] , Zeno Rocha [ctb, cph] , Nick Payne [ctb, cph] [...truncated...]
Maintainer: Garrick Aden-Buie <garrick@posit.co>

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Package gginnards updated to version 0.1.2 with previous version 0.1.1 dated 2022-10-15

Title: Explore the Innards of 'ggplot2' Objects
Description: Extensions to 'ggplot2' providing low-level debug tools: statistics and geometries echoing their data argument. Layer manipulation: deletion, insertion, extraction and reordering of layers. Deletion of unused variables from the data object embedded in "ggplot" objects.
Author: Pedro J. Aphalo [aut, cre]
Maintainer: Pedro J. Aphalo <pedro.aphalo@helsinki.fi>

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Package tldr updated to version 0.3.0 with previous version 0.2.3 dated 2021-07-28

Title: T Loux Doing R: Functions to Simplify Data Analysis and Reporting
Description: Gives a number of functions to aid common data analysis processes and reporting statistical results in an 'RMarkdown' file. Data analysis functions combine multiple base R functions used to describe simple bivariate relationships into a single, easy to use function. Reporting functions will return character strings to report p-values, confidence intervals, and hypothesis test and regression results. Strings will be LaTeX-formatted as necessary and will knit pretty in an 'RMarkdown' document. The package also provides a wrapper for the CreateTableOne() function in the 'tableone' package to make the results knit-able.
Author: Travis Loux [aut, cre]
Maintainer: Travis Loux <travis.loux@slu.edu>

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Package styler updated to version 1.10.0 with previous version 1.9.1 dated 2023-03-04

Title: Non-Invasive Pretty Printing of R Code
Description: Pretty-prints R code without changing the user's formatting intent.
Author: Kirill Mueller [aut] , Lorenz Walthert [cre, aut], Indrajeet Patil [ctb]
Maintainer: Lorenz Walthert <lorenz.walthert@icloud.com>

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 styler-1.10.0/styler/NAMESPACE                                                                                    |    3 
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 styler-1.10.0/styler/R/detect-alignment.R                                                                         |    7 
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 styler-1.10.0/styler/R/parse.R                                                                                    |   11 
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 styler-1.10.0/styler/R/utils.R                                                                                    |    2 
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Package statnet.common updated to version 4.9.0 with previous version 4.8.0 dated 2023-01-24

Title: Common R Scripts and Utilities Used by the Statnet Project Software
Description: Non-statistical utilities used by the software developed by the Statnet Project. They may also be of use to others.
Author: Pavel N. Krivitsky [aut, cre] , Skye Bender-deMoll [ctb], Chad Klumb [ctb]
Maintainer: Pavel N. Krivitsky <pavel@statnet.org>

Diff between statnet.common versions 4.8.0 dated 2023-01-24 and 4.9.0 dated 2023-05-24

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Package rgeos updated to version 0.6-3 with previous version 0.6-2 dated 2023-03-02

Title: Interface to Geometry Engine - Open Source ('GEOS')
Description: Interface to Geometry Engine - Open Source ('GEOS') using the C 'API' for topology operations on geometries. Please note that 'rgeos' will be retired during October 2023, plan transition to 'sf' or 'terra' functions using 'GEOS' at your earliest convenience (see <https://r-spatial.org/r/2023/05/15/evolution4.html> and earlier blogs for guidance). The 'GEOS' library is external to the package, and, when installing the package from source, must be correctly installed first. Windows and Mac Intel OS X binaries are provided on 'CRAN'. ('rgeos' >= 0.5-1): Up to and including 'GEOS' 3.7.1, topological operations succeeded with some invalid geometries for which the same operations fail from and including 'GEOS' 3.7.2. The 'checkValidity=' argument defaults and structure have been changed, from default FALSE to integer default '0L' for 'GEOS' < 3.7.2 (no check), '1L' 'GEOS' >= 3.7.2 (check and warn). A value of '2L' is also provided that may be used, assigned globally using 'set [...truncated...]
Author: Roger Bivand [cre, aut] , Colin Rundel [aut], Edzer Pebesma [ctb], Rainer Stuetz [ctb], Karl Ove Hufthammer [ctb], Patrick Giraudoux [ctb], Martin Davis [cph, ctb], Sandro Santilli [cph, ctb]
Maintainer: Roger Bivand <Roger.Bivand@nhh.no>

Diff between rgeos versions 0.6-2 dated 2023-03-02 and 0.6-3 dated 2023-05-24

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Package GGMselect updated to version 0.1-12.6 with previous version 0.1-12.5 dated 2022-05-01

Title: Gaussian Graphs Models Selection
Description: Graph estimation in Gaussian Graphical Models, following the method developed by C. Giraud, S. Huet and N. Verzelen (2012) <doi:10.1515/1544-6115.1625>. The main functions return the adjacency matrix of an undirected graph estimated from a data matrix.
Author: Annie Bouvier, Christophe Giraud, Sylvie Huet, Verzelen N.
Maintainer: Benjamin Auder <benjamin.auder@universite-paris-saclay.fr>

Diff between GGMselect versions 0.1-12.5 dated 2022-05-01 and 0.1-12.6 dated 2023-05-24

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Package arcpullr updated to version 0.2.8 with previous version 0.2.7 dated 2022-08-30

Title: Pull Data from an 'ArcGIS REST' API
Description: Functions to efficiently query 'ArcGIS REST' APIs <https://developers.arcgis.com/rest/>. Both spatial and SQL queries can be used to retrieve data. Simple Feature (sf) objects are utilized to perform spatial queries. This package was neither produced nor is maintained by Esri.
Author: Paul Frater [aut, cre] , Zac Driscoll [aut]
Maintainer: Paul Frater <paul.frater@wisconsin.gov>

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Package scatterpie updated to version 0.2.0 with previous version 0.1.9 dated 2023-04-21

Title: Scatter Pie Plot
Description: Creates scatterpie plots, especially useful for plotting pies on a map.
Author: Guangchuang Yu [aut, cre]
Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>

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Package scan updated to version 0.58 with previous version 0.57 dated 2023-02-24

Title: Single-Case Data Analyses for Single and Multiple Baseline Designs
Description: A collection of procedures for analysing, visualising, and managing single-case data. These include piecewise linear regression models, multilevel models, overlap indices ('PND', 'PEM', 'PAND', 'PET', 'tau-u', 'baseline corrected tau', 'CDC'), and randomization tests. Data preparation functions support outlier detection, handling missing values, scaling, truncation, rank transformation, and smoothing. An export function helps to generate html and latex tables in a publication friendly style. More details can be found in the online book 'Analyzing single-case data with R and scan', Juergen Wilbert (2013) <https://jazznbass.github.io/scan-Book/>.
Author: Juergen Wilbert [cre, aut] , Timo Lueke [aut]
Maintainer: Juergen Wilbert <juergen.wilbert@uni-potsdam.de>

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 scan-0.58/scan/data/Waddell2011.rda             |only
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 scan-0.58/scan/data/exampleA1B1A2B2.rda         |only
 scan-0.58/scan/data/exampleA1B1A2B2_zvt.rda     |only
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 scan-0.58/scan/data/exampleABC.rda              |only
 scan-0.58/scan/data/exampleABC_150.rda          |only
 scan-0.58/scan/data/exampleABC_outlier.rda      |only
 scan-0.58/scan/data/exampleAB_50.l2.rda         |only
 scan-0.58/scan/data/exampleAB_50.rda            |only
 scan-0.58/scan/data/exampleAB_add.rda           |only
 scan-0.58/scan/data/exampleAB_decreasing.rda    |only
 scan-0.58/scan/data/exampleAB_mpd.rda           |only
 scan-0.58/scan/data/exampleAB_score.rda         |only
 scan-0.58/scan/data/exampleAB_simple.rda        |only
 scan-0.58/scan/data/example_A24.rda             |only
 scan-0.58/scan/inst/CITATION                    |    2 
 scan-0.58/scan/inst/shiny                       |only
 scan-0.58/scan/man/add_l2.Rd                    |    9 
 scan-0.58/scan/man/as.data.frame.scdf.Rd        |    2 
 scan-0.58/scan/man/as_scdf.Rd                   |   12 
 scan-0.58/scan/man/autocorr.Rd                  |   13 -
 scan-0.58/scan/man/batch_apply.Rd               |only
 scan-0.58/scan/man/cdc.Rd                       |   57 ++--
 scan-0.58/scan/man/coef.sc_plm.Rd               |    4 
 scan-0.58/scan/man/combine.Rd                   |   19 +
 scan-0.58/scan/man/convert.Rd                   |   25 +
 scan-0.58/scan/man/corrected_tau.Rd             |   58 +---
 scan-0.58/scan/man/deprecated-functions.Rd      |   17 -
 scan-0.58/scan/man/describe.Rd                  |   16 -
 scan-0.58/scan/man/design.Rd                    |  157 +++++-------
 scan-0.58/scan/man/dot-inheritParams.Rd         |   24 -
 scan-0.58/scan/man/estimate_design.Rd           |   52 ++--
 scan-0.58/scan/man/example_data.Rd              |only
 scan-0.58/scan/man/fill_missing.Rd              |   29 +-
 scan-0.58/scan/man/hplm.Rd                      |   36 +-
 scan-0.58/scan/man/mplm.Rd                      |   32 +-
 scan-0.58/scan/man/nap.Rd                       |   27 +-
 scan-0.58/scan/man/outlier.Rd                   |   24 -
 scan-0.58/scan/man/overlap.Rd                   |   33 +-
 scan-0.58/scan/man/pand.Rd                      |   57 ++--
 scan-0.58/scan/man/pem.Rd                       |   15 -
 scan-0.58/scan/man/pet.Rd                       |   17 -
 scan-0.58/scan/man/plm.Rd                       |   61 ++--
 scan-0.58/scan/man/plot.scdf.Rd                 |   57 ++--
 scan-0.58/scan/man/plot_rand.Rd                 |    2 
 scan-0.58/scan/man/pnd.Rd                       |   17 -
 scan-0.58/scan/man/power_test.Rd                |   32 +-
 scan-0.58/scan/man/print.sc.Rd                  |    9 
 scan-0.58/scan/man/print.scdf.Rd                |    4 
 scan-0.58/scan/man/rand_test.Rd                 |   13 -
 scan-0.58/scan/man/random_scdf.Rd               |    6 
 scan-0.58/scan/man/ranks.Rd                     |   12 
 scan-0.58/scan/man/rci.Rd                       |   26 --
 scan-0.58/scan/man/read_scdf.Rd                 |    4 
 scan-0.58/scan/man/scan-package.Rd              |    3 
 scan-0.58/scan/man/scdf.Rd                      |   55 +---
 scan-0.58/scan/man/scdf_attr.Rd                 |   13 -
 scan-0.58/scan/man/select_cases.Rd              |    4 
 scan-0.58/scan/man/select_phases.Rd             |   14 -
 scan-0.58/scan/man/set_vars.Rd                  |    4 
 scan-0.58/scan/man/shift.Rd                     |   10 
 scan-0.58/scan/man/shinyscan.Rd                 |only
 scan-0.58/scan/man/smd.Rd                       |   34 +-
 scan-0.58/scan/man/smooth_cases.Rd              |   16 -
 scan-0.58/scan/man/standardize.Rd               |   10 
 scan-0.58/scan/man/style_plot.Rd                |   80 +++---
 scan-0.58/scan/man/subset.scdf.Rd               |   13 -
 scan-0.58/scan/man/tau_u.Rd                     |   69 ++---
 scan-0.58/scan/man/transform.scdf.Rd            |    2 
 scan-0.58/scan/man/trend.Rd                     |   20 -
 scan-0.58/scan/man/truncate_phase.Rd            |   10 
 scan-0.58/scan/man/write_scdf.Rd                |    9 
 scan-0.58/scan/tests/testthat/test-as_scdf.R    |only
 scan-0.58/scan/tests/testthat/test-autocorr.R   |only
 scan-0.58/scan/tests/testthat/test-cdc.R        |only
 scan-0.58/scan/tests/testthat/test-convert.R    |only
 scan-0.58/scan/tests/testthat/test-corrected.R  |only
 scan-0.58/scan/tests/testthat/test-describe.R   |only
 180 files changed, 2275 insertions(+), 2028 deletions(-)

More information about scan at CRAN
Permanent link

Package rStrava updated to version 1.2.0 with previous version 1.1.4 dated 2021-10-27

Title: Access the 'Strava' API
Description: Functions to access data from the 'Strava v3 API' <https://developers.strava.com/>.
Author: Marcus W. Beck [cre], Pedro Villarroel [aut], Daniel Padfield [aut], Lorenzo Gaborini [aut], Niklas von Maltzahn [aut]
Maintainer: Marcus W. Beck <mbafs2012@gmail.com>

Diff between rStrava versions 1.1.4 dated 2021-10-27 and 1.2.0 dated 2023-05-24

 DESCRIPTION                        |   15 +++++++--------
 MD5                                |   32 ++++++++++++++++++--------------
 R/compile_activities.R             |   13 +++++++++----
 R/compile_activity_streams.R       |    4 ++--
 R/get_activity_streams.R           |    5 +++--
 R/get_heat_map.R                   |    8 ++++----
 R/get_streams.R                    |   14 +++++++++-----
 man/figures/unnamed-chunk-13-1.png |binary
 man/figures/unnamed-chunk-14-1.png |binary
 man/figures/unnamed-chunk-14-2.png |binary
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 man/figures/unnamed-chunk-19-2.png |only
 man/get_activity_streams.Rd        |    2 +-
 man/get_heat_map.Rd                |    4 ++--
 man/get_streams.Rd                 |    4 ++--
 19 files changed, 57 insertions(+), 44 deletions(-)

More information about rStrava at CRAN
Permanent link

Package mlr3spatiotempcv updated to version 2.1.0 with previous version 2.0.3 dated 2022-11-18

Title: Spatiotemporal Resampling Methods for 'mlr3'
Description: Extends the mlr3 ML framework with spatio-temporal resampling methods to account for the presence of spatiotemporal autocorrelation (STAC) in predictor variables. STAC may cause highly biased performance estimates in cross-validation if ignored.
Author: Patrick Schratz [aut, cre] , Marc Becker [aut] , Jannes Muenchow [ctb] , Michel Lang [ctb]
Maintainer: Patrick Schratz <patrick.schratz@gmail.com>

Diff between mlr3spatiotempcv versions 2.0.3 dated 2022-11-18 and 2.1.0 dated 2023-05-24

 mlr3spatiotempcv-2.0.3/mlr3spatiotempcv/R/ResamplingRepeatedSptCVCluto.R                                                  |only
 mlr3spatiotempcv-2.0.3/mlr3spatiotempcv/R/ResamplingSptCVCluto.R                                                          |only
 mlr3spatiotempcv-2.0.3/mlr3spatiotempcv/man/autoplot.ResamplingSptCVCluto.Rd                                              |only
 mlr3spatiotempcv-2.0.3/mlr3spatiotempcv/man/mlr_resamplings_repeated_sptcv_cluto.Rd                                       |only
 mlr3spatiotempcv-2.0.3/mlr3spatiotempcv/man/mlr_resamplings_sptcv_cluto.Rd                                                |only
 mlr3spatiotempcv-2.0.3/mlr3spatiotempcv/tests/testthat/setup-cluto.R                                                      |only
 mlr3spatiotempcv-2.0.3/mlr3spatiotempcv/tests/testthat/test-ResamplingRepeatedSptCVCluto.R                                |only
 mlr3spatiotempcv-2.0.3/mlr3spatiotempcv/tests/testthat/test-ResamplingSptCVCluto.R                                        |only
 mlr3spatiotempcv-2.0.3/mlr3spatiotempcv/tests/testthat/test-autoplot_cluto.R                                              |only
 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/DESCRIPTION                                                                       |   17 
 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/MD5                                                                               |  215 +-
 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/NAMESPACE                                                                         |    7 
 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/NEWS.md                                                                           |   11 
 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/R/ResamplingRepeatedSpCVBlock.R                                                   |   48 
 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/R/ResamplingRepeatedSpCVEnv.R                                                     |    2 
 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/R/ResamplingSpCVBlock.R                                                           |   43 
 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/R/ResamplingSpCVBuffer.R                                                          |   27 
 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/R/ResamplingSpCVEnv.R                                                             |    2 
 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/R/autoplot.R                                                                      |  130 -
 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/R/autoplot_spcv_cstf.R                                                            |    1 
 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/R/helper.R                                                                        |   41 
 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/R/zzz.R                                                                           |   10 
 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/README.md                                                                         |    2 
 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/build/partial.rdb                                                                 |binary
 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/build/vignette.rds                                                                |binary
 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/inst/doc/mlr3spatiotempcv.Rmd                                                     |    4 
 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/inst/doc/mlr3spatiotempcv.html                                                    |  127 -
 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/inst/doc/spatiotemp-viz.Rmd                                                       |    2 
 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/inst/doc/spatiotemp-viz.html                                                      |   81 
 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/man/autoplot.ResamplingCV.Rd                                                      |    1 
 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/man/autoplot.ResamplingCustomCV.Rd                                                |    1 
 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/man/autoplot.ResamplingSpCVBlock.Rd                                               |    1 
 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/man/autoplot.ResamplingSpCVBuffer.Rd                                              |    1 
 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/man/autoplot.ResamplingSpCVCoords.Rd                                              |    1 
 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/man/autoplot.ResamplingSpCVDisc.Rd                                                |    1 
 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/man/autoplot.ResamplingSpCVEnv.Rd                                                 |    1 
 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/man/autoplot.ResamplingSpCVTiles.Rd                                               |    1 
 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/man/autoplot.ResamplingSptCVCstf.Rd                                               |    1 
 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/man/mlr_resamplings_repeated_spcv_block.Rd                                        |   61 
 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/man/mlr_resamplings_repeated_spcv_env.Rd                                          |    6 
 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/man/mlr_resamplings_spcv_block.Rd                                                 |   61 
 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/man/mlr_resamplings_spcv_buffer.Rd                                                |   52 
 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/man/mlr_resamplings_spcv_env.Rd                                                   |    6 
 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/tests/testthat/_snaps/1-autoplot/autoplot-show-blocks-true-show-labels-true.svg   |  408 ++--
 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/tests/testthat/_snaps/1-autoplot/custom-cv-fold-1-2-sample-fold-n.svg             |   64 
 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/tests/testthat/_snaps/1-autoplot/custom-cv-fold-1-2.svg                           |  658 +++----
 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/tests/testthat/_snaps/1-autoplot/custom-cv-fold-1-sample-fold-n.svg               |   28 
 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/tests/testthat/_snaps/1-autoplot/custom-cv-fold-1.svg                             |  328 +--
 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/tests/testthat/_snaps/1-autoplot/cv-fold-1-2-groups-col-role.svg                  |  838 +++++-----
 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/tests/testthat/_snaps/1-autoplot/cv-fold-1-2-sample-fold-n.svg                    |   70 
 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/tests/testthat/_snaps/1-autoplot/cv-fold-1-2.svg                                  |   88 -
 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/tests/testthat/_snaps/1-autoplot/cv-fold-1-groups-col-role.svg                    |  398 ++--
 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/tests/testthat/_snaps/1-autoplot/cv-fold-1-sample-fold-n.svg                      |   32 
 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/tests/testthat/_snaps/1-autoplot/cv-fold-1.svg                                    |   44 
 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/tests/testthat/_snaps/1-autoplot/repcv-fold-1-2-rep-1.svg                         |   88 -
 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/tests/testthat/_snaps/1-autoplot/repcv-fold-1-rep-1.svg                           |   44 
 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/tests/testthat/_snaps/1-autoplot/repcv-fold-1-rep-2.svg                           |   44 
 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/tests/testthat/_snaps/1-autoplot/repspcvblock-fold-1-2-rep-1.svg                  |   84 -
 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/tests/testthat/_snaps/1-autoplot/repspcvblock-fold-1-rep-1.svg                    |   50 
 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/tests/testthat/_snaps/1-autoplot/repspcvblock-fold-1-rep-2.svg                    |   44 
 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/tests/testthat/_snaps/1-autoplot/repspcvcoords-fold-1-2-rep-1.svg                 |   82 
 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/tests/testthat/_snaps/1-autoplot/repspcvcoords-fold-1-2-sample-fold-n.svg         |   58 
 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/tests/testthat/_snaps/1-autoplot/repspcvcoords-fold-1-rep-1.svg                   |   38 
 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/tests/testthat/_snaps/1-autoplot/repspcvcoords-fold-1-rep-2.svg                   |   38 
 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/tests/testthat/_snaps/1-autoplot/repspcvcoords-fold-1-sample-fold-n.svg           |   32 
 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/tests/testthat/_snaps/1-autoplot/repspcvenv-fold-1-2-rep-1.svg                    |   78 
 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/tests/testthat/_snaps/1-autoplot/repspcvenv-fold-1-rep-1.svg                      |   30 
 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/tests/testthat/_snaps/1-autoplot/repspcvenv-fold-1-rep-2.svg                      |   42 
 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/tests/testthat/_snaps/1-autoplot/spcvblock-fold-1-2-sample-fold-n.svg             |   64 
 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/tests/testthat/_snaps/1-autoplot/spcvblock-fold-1-2.svg                           |   88 -
 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/tests/testthat/_snaps/1-autoplot/spcvblock-fold-1-sample-fold-n.svg               |   32 
 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/tests/testthat/_snaps/1-autoplot/spcvblock-fold-1.svg                             |   44 
 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/tests/testthat/_snaps/1-autoplot/spcvcoords-fold-1-2.svg                          |   82 
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 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/tests/testthat/_snaps/1-autoplot/spcvenv-fold-1-2-sample-fold-n.svg               |   60 
 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/tests/testthat/_snaps/1-autoplot/spcvenv-fold-1-2.svg                             |   78 
 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/tests/testthat/_snaps/1-autoplot/spcvenv-fold-1-sample-fold-n.svg                 |   30 
 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/tests/testthat/_snaps/1-autoplot/spcvenv-fold-1.svg                               |   30 
 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/tests/testthat/_snaps/2-autoplot/repspcvdisc-fold-1-2-sample-fold-n.svg           |   44 
 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/tests/testthat/_snaps/2-autoplot/repspcvdisc-fold-1-rep-2.svg                     |   68 
 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/tests/testthat/_snaps/2-autoplot/repspcvdisc-fold-1-sample-fold-n.svg             |   22 
 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/tests/testthat/_snaps/2-autoplot/repspcvtiles-fold-1-2-rep-2.svg                  |  362 ++--
 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/tests/testthat/_snaps/2-autoplot/repspcvtiles-fold-1-2-sample-fold-n.svg          |   66 
 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/tests/testthat/_snaps/2-autoplot/repspcvtiles-fold-1-2.svg                        |  362 ++--
 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/tests/testthat/_snaps/2-autoplot/repspcvtiles-fold-1-rep-2.svg                    |  160 -
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 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/tests/testthat/_snaps/2-autoplot/repspcvtiles-show-omitted.svg                    |  296 +--
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Package compareGroups updated to version 4.7.0 with previous version 4.6.0 dated 2022-11-18

Title: Descriptive Analysis by Groups
Description: Create data summaries for quality control, extensive reports for exploring data, as well as publication-ready univariate or bivariate tables in several formats (plain text, HTML,LaTeX, PDF, Word or Excel. Create figures to quickly visualise the distribution of your data (boxplots, barplots, normality-plots, etc.). Display statistics (mean, median, frequencies, incidences, etc.). Perform the appropriate tests (t-test, Analysis of variance, Kruskal-Wallis, Fisher, log-rank, ...) depending on the nature of the described variable (normal, non-normal or qualitative). Summarize genetic data (Single Nucleotide Polymorphisms) data displaying Allele Frequencies and performing Hardy-Weinberg Equilibrium tests among other typical statistics and tests for these kind of data.
Author: Isaac Subirana [aut, cre] , Joan Salvador [ctb]
Maintainer: Isaac Subirana <isubirana@imim.es>

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Package multinma updated to version 0.5.1 with previous version 0.5.0 dated 2022-08-29

Title: Bayesian Network Meta-Analysis of Individual and Aggregate Data
Description: Network meta-analysis and network meta-regression models for aggregate data, individual patient data, and mixtures of both individual and aggregate data using multilevel network meta-regression as described by Phillippo et al. (2020) <doi:10.1111/rssa.12579>. Models are estimated in a Bayesian framework using 'Stan'.
Author: David M. Phillippo [aut, cre]
Maintainer: David M. Phillippo <david.phillippo@bristol.ac.uk>

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Package ispdata updated to version 1.1.2 with previous version 1.1 dated 2023-02-10

Title: Access Data from the Public Security Institute of the State of Rio De Janeiro
Description: Allows access to data from the Rio de Janeiro Public Security Institute (ISP), such as criminal statistics, data on gun seizures and femicide. The package also contains the spatial data of Pacifying Police Units (UPPs) and Integrated Public Safety Regions, Areas and Circumscriptions.
Author: Igor Laltuf [aut, cre] , Instituto de Seguranca Publica [aut, cph]
Maintainer: Igor Laltuf <igorlaltuf@gmail.com>

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Package boxfilter updated to version 0.2 with previous version 0.1 dated 2022-11-28

Title: Filter Noisy Data
Description: Noise filter based on determining the proportion of neighboring points. A false point will be rejected if it has only few neighbors, but accepted if the proportion of neighbors in a rectangular frame is high. The size of the rectangular frame as well as the cut-off value, i.e. of a minimum proportion of neighbor-points, may be supplied or can be calculated automatically. Originally designed for the cleaning of heart rates, but suitable for filtering any slowly-changing physiological variable.For more information see Signer (2010)<doi:10.1111/j.2041-210X.2009.00010.x>.
Author: Thomas Ruf [aut, cre]
Maintainer: Thomas Ruf <Thomas.P.Ruf@me.com>

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Package tactile updated to version 0.2.1 with previous version 0.2.0 dated 2018-04-23

Title: New and Extended Plots, Methods, and Panel Functions for 'lattice'
Description: Extensions to 'lattice', providing new high-level functions, methods for existing functions, panel functions, and a theme.
Author: Johan Larsson [aut, cre] , Deepayan Sarkar [ctb, cph] , Brian Ripley [ctb]
Maintainer: Johan Larsson <johanlarsson@outlook.com>

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Package SWTools updated to version 1.0 with previous version 0.2.5 dated 2023-04-05

Title: Helper Tools for Australian Hydrologists
Description: Functions to speed up work flow for hydrological analysis. Focused on Australian climate data (SILO climate data), hydrological models (eWater Source) and in particular South Australia (<https://water.data.sa.gov.au> hydrological data).
Author: Matt Gibbs [aut, cre]
Maintainer: Matt Gibbs <gibbs.ms@gmail.com>

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Package sf updated to version 1.0-13 with previous version 1.0-12 dated 2023-03-19

Title: Simple Features for R
Description: Support for simple features, a standardized way to encode spatial vector data. Binds to 'GDAL' for reading and writing data, to 'GEOS' for geometrical operations, and to 'PROJ' for projection conversions and datum transformations. Uses by default the 's2' package for spherical geometry operations on ellipsoidal (long/lat) coordinates.
Author: Edzer Pebesma [aut, cre] , Roger Bivand [ctb] , Etienne Racine [ctb], Michael Sumner [ctb], Ian Cook [ctb], Tim Keitt [ctb], Robin Lovelace [ctb], Hadley Wickham [ctb], Jeroen Ooms [ctb] , Kirill Mueller [ctb], Thomas Lin Pedersen [ctb], Dan Baston [c [...truncated...]
Maintainer: Edzer Pebesma <edzer.pebesma@uni-muenster.de>

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Package lavaanExtra updated to version 0.1.6 with previous version 0.1.4 dated 2023-02-04

Title: Convenience Functions for Package 'lavaan'
Description: Affords an alternative, vector-based syntax to 'lavaan', as well as other convenience functions such as naming paths and defining indirect links automatically, in addition to convenience formatting optimized for a publication and script sharing workflow.
Author: Remi Theriault [aut, cre]
Maintainer: Remi Theriault <remi.theriault@mail.mcgill.ca>

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Package DEPONS2R updated to version 1.2.1 with previous version 1.2.0 dated 2023-04-21

Title: Read, Plot and Analyse Output from the DEPONS Model
Description: Methods for analyzing population dynamics and movement tracks simulated using the DEPONS model <https://www.depons.eu> (v.3.0), for manipulating input raster files, shipping routes and for analyzing sound propagated from ships.
Author: Jacob Nabe-Nielsen and Caitlin K. Frankish
Maintainer: Jacob Nabe-Nielsen <jnn@ecos.au.dk>

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Package dlstats updated to version 0.1.7 with previous version 0.1.6 dated 2022-12-09

Title: Download Stats of R Packages
Description: Monthly download stats of 'CRAN' and 'Bioconductor' packages. Download stats of 'CRAN' packages is from the 'RStudio' 'CRAN mirror', see <https://cranlogs.r-pkg.org:443>. 'Bioconductor' package download stats is at <https://bioconductor.org/packages/stats/>.
Author: Guangchuang Yu [aut, cre]
Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>

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Tue, 23 May 2023

Package genekitr updated to version 1.2.2 with previous version 1.1.9 dated 2023-04-15

Title: Gene Analysis Toolkit
Description: An analysis toolkit focused on genes. It mainly includes five features (search, convert, analysis, plot, and export). The user just needs to input feature id ('entrez', 'symbol', 'ensembl' or 'uniprot') to retrieve feature information and 'PubMed'<https://pubmed.ncbi.nlm.nih.gov/> records, to convert id types, to easily handle gene enrichment analysis and publication-level figures, to plot group interaction and export results as sheets in one 'excel' file to easily share and communicate with others.
Author: Yunze Liu [aut, cre]
Maintainer: Yunze Liu <jieandze1314@gmail.com>

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Package CDatanet updated to version 2.1.1 with previous version 2.1.0 dated 2023-03-12

Title: Modeling Count Data with Peer Effects
Description: Likelihood-based estimation and data generation from a class of models used to estimate peer effects on count data by controlling for the network endogeneity. This class includes count data models with social interactions (Houndetoungan 2022; <doi:10.2139/ssrn.3721250>), spatial tobit models (Xu and Lee 2015; <doi:10.1016/j.jeconom.2015.05.004>), and spatial linear-in-means models (Lee 2004; <doi:10.1111/j.1468-0262.2004.00558.x>).
Author: Elysee Aristide Houndetoungan [cre, aut]
Maintainer: Elysee Aristide Houndetoungan <ariel92and@gmail.com>

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Package seeker updated to version 1.1.3 with previous version 1.1.2 dated 2023-05-17

Title: Simplified Fetching and Processing of Microarray and RNA-Seq Data
Description: Wrapper around various existing tools and command-line interfaces, providing a standard interface, simple parallelization, and detailed logging. For microarray data, maps probe sets to standard gene IDs, building on 'GEOquery' Davis and Meltzer (2007) <doi:10.1093/bioinformatics/btm254>, 'ArrayExpress' Kauffmann et al. (2009) <doi:10.1093/bioinformatics/btp354>, Robust multi-array average 'RMA' Irizarry et al. (2003) <doi:10.1093/biostatistics/4.2.249>, and 'BrainArray' Dai et al. (2005) <doi:10.1093/nar/gni179>. For RNA-seq data, fetches metadata and raw reads from National Center for Biotechnology Information (NCBI) Sequence Read Archive (SRA), performs standard adapter and quality trimming using 'TrimGalore' Krueger <https://github.com/FelixKrueger/TrimGalore>, performs quality control checks using 'FastQC' Andrews <https://github.com/s-andrews/FastQC>, quantifies transcript abundances using 'salmon' Patro et al. (2017) <doi:10.1038/nmeth.4197& [...truncated...]
Author: Jake Hughey [aut, cre], Josh Schoenbachler [aut]
Maintainer: Jake Hughey <jakejhughey@gmail.com>

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Package SDGdetector updated to version 2.7.3 with previous version 2.7.2 dated 2023-04-24

Title: Detect SDGs and Targets in Text
Description: Identify 17 Sustainable Development Goals and associated 169 targets in text.
Author: Yingjie Li [aut, cre] , Veronica Frans [aut] , Yongze Song [aut] , Meng Cai [aut] , Yuqian Zhang [aut] , Jianguo Liu [aut]
Maintainer: Yingjie Li <yingjieli.edu@gmail.com>

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Package randomForestSRC updated to version 3.2.2 with previous version 3.2.1 dated 2023-03-03

Title: Fast Unified Random Forests for Survival, Regression, and Classification (RF-SRC)
Description: Fast OpenMP parallel computing of Breiman's random forests for univariate, multivariate, unsupervised, survival, competing risks, class imbalanced classification and quantile regression. New Mahalanobis splitting for correlated outcomes. Extreme random forests and randomized splitting. Suite of imputation methods for missing data. Fast random forests using subsampling. Confidence regions and standard errors for variable importance. New improved holdout importance. Case-specific importance. Minimal depth variable importance. Visualize trees on your Safari or Google Chrome browser. Anonymous random forests for data privacy.
Author: Hemant Ishwaran <hemant.ishwaran@gmail.com>, Udaya B. Kogalur <ubk@kogalur.com>
Maintainer: Udaya B. Kogalur <ubk@kogalur.com>

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Package pmparser updated to version 1.0.17 with previous version 1.0.16 dated 2023-02-12

Title: Create and Maintain a Relational Database of Data from PubMed/MEDLINE
Description: Provides a simple interface for extracting various elements from the publicly available PubMed XML files, incorporating PubMed's regular updates, and combining the data with the NIH Open Citation Collection. See Schoenbachler and Hughey (2021) <doi:10.7717/peerj.11071>.
Author: Jake Hughey [aut, cre], Josh Schoenbachler [aut], Elliot Outland [aut]
Maintainer: Jake Hughey <jakejhughey@gmail.com>

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Package phylosamp updated to version 1.0.1 with previous version 0.1.6 dated 2021-11-22

Title: Sample Size Calculations for Molecular and Phylogenetic Studies
Description: Implements novel tools for estimating sample sizes needed for phylogenetic studies, including studies focused on estimating the probability of true pathogen transmission between two cases given phylogenetic linkage and studies focused on tracking pathogen variants at a population level. Methods described in Wohl, Giles, and Lessler (2021) and in Wohl, Lee, DiPrete, and Lessler (2023).
Author: Shirlee Wohl [aut, ctb], Elizabeth C Lee [aut, ctb], Lucy D'Agostino McGowan [aut, ctb] , John R Giles [aut, ctb], Justin Lessler [aut, cre]
Maintainer: Justin Lessler <jlessler@unc.edu>

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Package fda updated to version 6.1.4 with previous version 6.0.5 dated 2022-07-04

Title: Functional Data Analysis
Description: These functions were developed to support functional data analysis as described in Ramsay, J. O. and Silverman, B. W. (2005) Functional Data Analysis. New York: Springer and in Ramsay, J. O., Hooker, Giles, and Graves, Spencer (2009). Functional Data Analysis with R and Matlab (Springer). The package includes data sets and script files working many examples including all but one of the 76 figures in this latter book. Matlab versions are available by ftp from <https://www.psych.mcgill.ca/misc/fda/downloads/FDAfuns/>.
Author: James Ramsay [aut, cre], Giles Hooker [ctb], Spencer Graves [ctb]
Maintainer: James Ramsay <ramsay@psych.mcgill.ca>

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Package statsExpressions updated to version 1.5.1 with previous version 1.5.0 dated 2023-02-19

Title: Tidy Dataframes and Expressions with Statistical Details
Description: Utilities for producing dataframes with rich details for the most common types of statistical approaches and tests: parametric, nonparametric, robust, and Bayesian t-test, one-way ANOVA, correlation analyses, contingency table analyses, and meta-analyses. The functions are pipe-friendly and provide a consistent syntax to work with tidy data. These dataframes additionally contain expressions with statistical details, and can be used in graphing packages. This package also forms the statistical processing backend for 'ggstatsplot'. References: Patil (2021) <doi:10.21105/joss.03236>.
Author: Indrajeet Patil [cre, aut, cph]
Maintainer: Indrajeet Patil <patilindrajeet.science@gmail.com>

Diff between statsExpressions versions 1.5.0 dated 2023-02-19 and 1.5.1 dated 2023-05-23

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Package varTestnlme updated to version 1.3.3 with previous version 1.3.2 dated 2023-05-03

Title: Variance Components Testing for Linear and Nonlinear Mixed Effects Models
Description: An implementation of the Likelihood ratio Test (LRT) for testing that, in a (non)linear mixed effects model, the variances of a subset of the random effects are equal to zero. There is no restriction on the subset of variances that can be tested: for example, it is possible to test that all the variances are equal to zero. Note that the implemented test is asymptotic. This package should be used on model fits from packages 'nlme', 'lmer', and 'saemix'. Charlotte Baey, Paul-Henry Cournède and Estelle Kuhn (2019) <doi:10.1016/j.csda.2019.01.014>.
Author: Charlotte Baey [aut, cre] , Estelle Kuhn [aut]
Maintainer: Charlotte Baey <charlotte.baey@univ-lille.fr>

Diff between varTestnlme versions 1.3.2 dated 2023-05-03 and 1.3.3 dated 2023-05-23

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Package matsindf updated to version 0.4.3 with previous version 0.4.1 dated 2023-04-26

Title: Matrices in Data Frames
Description: Provides functions to collapse a tidy data frame into matrices in a data frame and expand a data frame of matrices into a tidy data frame.
Author: Matthew Heun [aut, cre]
Maintainer: Matthew Heun <matthew.heun@me.com>

Diff between matsindf versions 0.4.1 dated 2023-04-26 and 0.4.3 dated 2023-05-23

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More information about matsindf at CRAN
Permanent link

Package cities updated to version 0.1.2 with previous version 0.1.1 dated 2023-02-14

Title: Clinical Trials with Intercurrent Events Simulator
Description: Simulates clinical trials and summarizes causal effects and treatment policy estimands in the presence of intercurrent events in a transparent and intuitive manner.
Author: Ahmad Hakeem Abdul Wahab [aut, cre] , Yongming Qu [aut], Hege Michiels [aut], Junxiang Luo [aut], Run Zhuang [aut], Dominique McDaniel [aut], Dong Xi [aut], Elena Polverejan [aut], Steven Gilbert [aut], Stephen Ruberg [aut], Arman Sabbagh [aut]
Maintainer: Ahmad Hakeem Abdul Wahab <hakeemwahab00@gmail.com>

Diff between cities versions 0.1.1 dated 2023-02-14 and 0.1.2 dated 2023-05-23

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More information about cities at CRAN
Permanent link

Package nimble updated to version 1.0.0 with previous version 0.13.2 dated 2023-05-14

Title: MCMC, Particle Filtering, and Programmable Hierarchical Modeling
Description: A system for writing hierarchical statistical models largely compatible with 'BUGS' and 'JAGS', writing nimbleFunctions to operate models and do basic R-style math, and compiling both models and nimbleFunctions via custom-generated C++. 'NIMBLE' includes default methods for MCMC, Monte Carlo Expectation Maximization, and some other tools. The nimbleFunction system makes it easy to do things like implement new MCMC samplers from R, customize the assignment of samplers to different parts of a model from R, and compile the new samplers automatically via C++ alongside the samplers 'NIMBLE' provides. 'NIMBLE' extends the 'BUGS'/'JAGS' language by making it extensible: New distributions and functions can be added, including as calls to external compiled code. Although most people think of MCMC as the main goal of the 'BUGS'/'JAGS' language for writing models, one can use 'NIMBLE' for writing arbitrary other kinds of model-generic algorithms as well. A full User Manual is available at <htt [...truncated...]
Author: Perry de Valpine [aut], Christopher Paciorek [aut, cre], Daniel Turek [aut], Nick Michaud [aut], Cliff Anderson-Bergman [aut], Fritz Obermeyer [aut], Claudia Wehrhahn Cortes [aut] , Abel Rodriguez [aut] , Duncan Temple Lang [aut] , Wei Zhang [aut] , [...truncated...]
Maintainer: Christopher Paciorek <paciorek@stat.berkeley.edu>

Diff between nimble versions 0.13.2 dated 2023-05-14 and 1.0.0 dated 2023-05-23

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More information about nimble at CRAN
Permanent link

Package SAMtool updated to version 1.5.3 with previous version 1.5.2 dated 2023-04-04

Title: Stock Assessment Methods Toolkit
Description: Simulation tools for closed-loop simulation are provided for the 'MSEtool' operating model to inform data-rich fisheries. 'SAMtool' provides a conditioning model, assessment models of varying complexity with standardized reporting, model-based management procedures, and diagnostic tools for evaluating assessments inside closed-loop simulation.
Author: Quang Huynh [aut, cre], Tom Carruthers [aut], Adrian Hordyk [aut]
Maintainer: Quang Huynh <quang@bluematterscience.com>

Diff between SAMtool versions 1.5.2 dated 2023-04-04 and 1.5.3 dated 2023-05-23

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Package MagmaClustR updated to version 1.1.2 with previous version 1.1.1 dated 2023-01-17

Title: Clustering and Prediction using Multi-Task Gaussian Processes with Common Mean
Description: An implementation for the multi-task Gaussian processes with common mean framework. Two main algorithms, called 'Magma' and 'MagmaClust', are available to perform predictions for supervised learning problems, in particular for time series or any functional/continuous data applications. The corresponding articles has been respectively proposed by Arthur Leroy, Pierre Latouche, Benjamin Guedj and Servane Gey (2022) <doi:10.1007/s10994-022-06172-1>, and Arthur Leroy, Pierre Latouche, Benjamin Guedj and Servane Gey (2023) <https://jmlr.org/papers/v24/20-1321.html>. Theses approaches leverage the learning of cluster-specific mean processes, which are common across similar tasks, to provide enhanced prediction performances (even far from data) at a linear computational cost (in the number of tasks). 'MagmaClust' is a generalisation of 'Magma' where the tasks are simultaneously clustered into groups, each being associated to a specific mean process. User-oriented functions in th [...truncated...]
Author: Arthur Leroy [aut, cre] , Pierre Latouche [aut], Pierre Pathe [ctb], Alexia Grenouillat [ctb], Hugo Lelievre [ctb]
Maintainer: Arthur Leroy <arthur.leroy.pro@gmail.com>

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Package r2dii.plot updated to version 0.3.1 with previous version 0.3.0 dated 2022-05-05

Title: Visualize the Climate Scenario Alignment of a Financial Portfolio
Description: Create plots to visualize the alignment of a corporate lending financial portfolio to climate change scenarios based on climate indicators (production and emission intensities) across key climate relevant sectors of the 'PACTA' methodology (Paris Agreement Capital Transition Assessment; <https://www.transitionmonitor.com/>). Financial institutions use 'PACTA' to study how their capital allocation decisions align with climate change mitigation goals.
Author: Monika Furdyna [aut, ctr, cre] , Mauro Lepore [aut, ctr] , Alex Axthelm [aut, ctr] , Rocky Mountain Institute [cph, fnd]
Maintainer: Monika Furdyna <monika.furdyna@gmail.com>

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Package insight updated to version 0.19.2 with previous version 0.19.1 dated 2023-03-18

Title: Easy Access to Model Information for Various Model Objects
Description: A tool to provide an easy, intuitive and consistent access to information contained in various R models, like model formulas, model terms, information about random effects, data that was used to fit the model or data from response variables. 'insight' mainly revolves around two types of functions: Functions that find (the names of) information, starting with 'find_', and functions that get the underlying data, starting with 'get_'. The package has a consistent syntax and works with many different model objects, where otherwise functions to access these information are missing.
Author: Daniel Luedecke [aut, cre] , Dominique Makowski [aut, ctb] , Indrajeet Patil [aut, ctb] , Philip Waggoner [aut, ctb] , Mattan S. Ben-Shachar [aut, ctb] , Brenton M. Wiernik [aut, ctb] , Vincent Arel-Bundock [aut, ctb] , Etienne Bacher [aut, ctb] , Ale [...truncated...]
Maintainer: Daniel Luedecke <d.luedecke@uke.de>

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 insight-0.19.2/insight/tests/testthat/test-vgam.R                         |  405 +-
 insight-0.19.2/insight/tests/testthat/test-vglm.R                         |  220 -
 insight-0.19.2/insight/tests/testthat/test-zeroinfl.R                     |  331 -
 201 files changed, 16823 insertions(+), 16242 deletions(-)

More information about insight at CRAN
Permanent link

Package statar updated to version 0.7.5 with previous version 0.7.4 dated 2022-07-18

Title: Tools Inspired by 'Stata' to Manipulate Tabular Data
Description: A set of tools inspired by 'Stata' to explore data.frames ('summarize', 'tabulate', 'xtile', 'pctile', 'binscatter', elapsed quarters/month, lead/lag).
Author: Matthieu Gomez [aut, cre]
Maintainer: Matthieu Gomez <mg3901@columbia.edu>

Diff between statar versions 0.7.4 dated 2022-07-18 and 0.7.5 dated 2023-05-23

 DESCRIPTION               |    8 -
 MD5                       |   25 ++--
 NEWS.md                   |only
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 man/stat_binmean.Rd       |   20 ++-
 14 files changed, 438 insertions(+), 389 deletions(-)

More information about statar at CRAN
Permanent link

Package TiPS updated to version 1.2.3 with previous version 1.2.2 dated 2023-02-27

Title: Trajectories and Phylogenies Simulator
Description: Generates stochastic time series and genealogies associated with a population dynamics model. Times series are simulated using the Gillespie exact and approximate algorithms and a new algorithm we introduce that uses both approaches to optimize the time execution of the simulations. Genealogies are simulated from a trajectory using a backwards-in-time based approach. Methods are described in Danesh G et al (2022) <doi:10.1111/2041-210X.14038>.
Author: Gonche Danesh [aut, cre, cph], Emma Saulnier [aut, cph], Olivier Gascuel [aut, cph], Marc Choisy [aut, cph, ths], Samuel Alizon [aut, cph, ths]
Maintainer: Gonche Danesh <gonche.danesh@gmail.com>

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 TiPS-1.2.3/TiPS/DESCRIPTION                                                                       |    8 
 TiPS-1.2.3/TiPS/MD5                                                                               |  328 +++++-----
 TiPS-1.2.3/TiPS/R/generator.R                                                                     |    2 
 TiPS-1.2.3/TiPS/R/treeSimulator.R                                                                 |   13 
 TiPS-1.2.3/TiPS/inst/doc/TiPS.Rmd                                                                 |    1 
 TiPS-1.2.3/TiPS/inst/doc/TiPS.html                                                                |   68 +-
 TiPS-1.2.3/TiPS/inst/include/Compartment.h                                                        |    3 
 TiPS-1.2.3/TiPS/inst/include/Node.h                                                               |    2 
 TiPS-1.2.3/TiPS/inst/include/Phyloepid.h                                                          |    8 
 TiPS-1.2.3/TiPS/src/Compartment.cpp                                                               |    9 
 TiPS-1.2.3/TiPS/src/Phyloepid.cpp                                                                 |   76 --
 TiPS-1.2.3/TiPS/src/Reaction.cpp                                                                  |    3 
 TiPS-1.2.3/TiPS/vignettes/TiPS.Rmd                                                                |    1 
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Package targets updated to version 1.1.3 with previous version 1.1.2 dated 2023-05-23

Title: Dynamic Function-Oriented 'Make'-Like Declarative Pipelines
Description: Pipeline tools coordinate the pieces of computationally demanding analysis projects. The 'targets' package is a 'Make'-like pipeline tool for statistics and data science in R. The package skips costly runtime for tasks that are already up to date, orchestrates the necessary computation with implicit parallel computing, and abstracts files as R objects. If all the current output matches the current upstream code and data, then the whole pipeline is up to date, and the results are more trustworthy than otherwise. The methodology in this package borrows from GNU 'Make' (2015, ISBN:978-9881443519) and 'drake' (2018, <doi:10.21105/joss.00550>).
Author: William Michael Landau [aut, cre] , Matthew T. Warkentin [ctb], Mark Edmondson [ctb] , Samantha Oliver [rev] , Tristan Mahr [rev] , Eli Lilly and Company [cph]
Maintainer: William Michael Landau <will.landau@gmail.com>

Diff between targets versions 1.1.2 dated 2023-05-23 and 1.1.3 dated 2023-05-23

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Package neotoma2 updated to version 1.0.1 with previous version 1.0.0 dated 2023-04-20

Title: Working with the Neotoma Paleoecology Database
Description: Access and manipulation of data using the Neotoma Paleoecology Database. <https://api.neotomadb.org/api-docs/>.
Author: Dominguez Vidana Socorro [aut] , Simon Goring [aut, cre]
Maintainer: Simon Goring <goring@wisc.edu>

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Package apaText updated to version 0.1.7 with previous version 0.1.1 dated 2018-04-16

Title: Create R Markdown Text for Results in the Style of the American Psychological Association (APA)
Description: Create APA style text from analyses for use within R Markdown documents. Descriptive statistics, confidence intervals, and cell sizes are reported.
Author: David Stanley [aut, cre]
Maintainer: David Stanley <dstanley@uoguelph.ca>

Diff between apaText versions 0.1.1 dated 2018-04-16 and 0.1.7 dated 2023-05-23

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Package cbcTools updated to version 0.3.2 with previous version 0.3.0 dated 2023-05-09

Title: Design and Evaluate Choice-Based Conjoint Survey Experiments
Description: Design and evaluate choice-based conjoint survey experiments in R. Generate survey designs, including randomized designs and Bayesian D-efficient designs as well as designs with "no choice" options and labeled designs. Conveniently inspect the design balance and overlap, and simulate choice data for a survey design either randomly or according to a multinomial or mixed logit utility model defined by user-provided prior parameters. Conduct power analyses on a survey design by estimating the same model multiple times using different subsets of the data to simulate different sample sizes. Choice simulation and model estimation are handled using the 'logitr' package, and Bayesian D-efficient designs are obtained using the 'idefix' package. For more details see Helveston (2023) <doi:10.18637/jss.v105.i10> and Traets et al (2020) <doi:10.18637/jss.v096.i03>.
Author: John Helveston [cre, aut, cph]
Maintainer: John Helveston <john.helveston@gmail.com>

Diff between cbcTools versions 0.3.0 dated 2023-05-09 and 0.3.2 dated 2023-05-23

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Package catdata updated to version 1.2.3 with previous version 1.2.2 dated 2020-02-07

Title: Categorical Data
Description: This R-package contains examples from the book "Regression for Categorical Data", Tutz 2012, Cambridge University Press. The names of the examples refer to the chapter and the data set that is used.
Author: Gunther Schauberger, Gerhard Tutz
Maintainer: Gunther Schauberger <gunther.schauberger@tum.de>

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Package topr updated to version 1.1.7 with previous version 1.1.6 dated 2023-04-26

Title: Create Custom Plots for Viewing Genetic Association Results
Description: A collection of functions for visualizing,exploring and annotating genetic association results.Association results from multiple traits can be viewed simultaneously along with gene annotation, over the entire genome (Manhattan plot) or in the more detailed regional view.
Author: Thorhildur Juliusdottir [cph, aut, cre], Andri Stefansson [aut]
Maintainer: Thorhildur Juliusdottir <totajuliusd@gmail.com>

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Package redland updated to version 1.0.17-17 with previous version 1.0.17-16.1 dated 2023-05-19

Title: RDF Library Bindings in R
Description: Provides methods to parse, query and serialize information stored in the Resource Description Framework (RDF). RDF is described at <https://www.w3.org/TR/rdf-primer/>. This package supports RDF by implementing an R interface to the Redland RDF C library, described at <https://librdf.org/docs/api/index.html>. In brief, RDF provides a structured graph consisting of Statements composed of Subject, Predicate, and Object Nodes.
Author: Matthew B. Jones [aut, cre], Peter Slaughter [aut], Jeroen Ooms [aut], Carl Boettiger [aut], Scott Chamberlain [aut], David Beckett [cph], University of Bristol [cph], Regents of the University of California [cph]
Maintainer: Matthew B. Jones <jones@nceas.ucsb.edu>

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Package duckdb updated to version 0.8.0 with previous version 0.7.1-1 dated 2023-03-01

Title: DBI Package for the DuckDB Database Management System
Description: The DuckDB project is an embedded analytical data management system with support for the Structured Query Language (SQL). This package includes all of DuckDB and a R Database Interface (DBI) connector.
Author: Hannes Muehleisen [aut, cre] , Mark Raasveldt [aut] , Stichting DuckDB Foundation [cph], Apache Software Foundation [cph], PostgreSQL Global Development Group [cph], The Regents of the University of California [cph], Cameron Desrochers [cph], Victor Z [...truncated...]
Maintainer: Hannes Muehleisen <hannes@cwi.nl>

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 duckdb-0.8.0/duckdb/DESCRIPTION                                                                                   |    6 
 duckdb-0.8.0/duckdb/MD5                                                                                           | 3487 
 duckdb-0.8.0/duckdb/R/backend-dbplyr__duckdb_connection.R                                                         |    2 
 duckdb-0.8.0/duckdb/R/cpp11.R                                                                                     |   20 
 duckdb-0.8.0/duckdb/R/register.R                                                                                  |    1 
 duckdb-0.8.0/duckdb/R/relational.R                                                                                |   75 
 duckdb-0.8.0/duckdb/R/sql.R                                                                                       |   20 
 duckdb-0.8.0/duckdb/README.md                                                                                     |    3 
 duckdb-0.8.0/duckdb/inst/include/cpp11/as.hpp                                                                     |  325 
 duckdb-0.8.0/duckdb/inst/include/cpp11/external_pointer.hpp                                                       |   10 
 duckdb-0.8.0/duckdb/man/duckdb_register.Rd                                                                        |    1 
 duckdb-0.8.0/duckdb/src/Makevars                                                                                  |    2 
 duckdb-0.8.0/duckdb/src/Makevars.win                                                                              |    4 
 duckdb-0.8.0/duckdb/src/connection.cpp                                                                            |    2 
 duckdb-0.8.0/duckdb/src/cpp11.cpp                                                                                 |   40 
 duckdb-0.8.0/duckdb/src/database.cpp                                                                              |    4 
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 duckdb-0.8.0/duckdb/src/duckdb/extension/parquet/column_writer.cpp                                                |  218 
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 duckdb-0.8.0/duckdb/src/duckdb/extension/parquet/include/cast_column_reader.hpp                                   |   11 
 duckdb-0.8.0/duckdb/src/duckdb/extension/parquet/include/column_reader.hpp                                        |   36 
 duckdb-0.8.0/duckdb/src/duckdb/extension/parquet/include/column_writer.hpp                                        |   15 
 duckdb-0.8.0/duckdb/src/duckdb/extension/parquet/include/decode_utils.hpp                                         |    9 
 duckdb-0.8.0/duckdb/src/duckdb/extension/parquet/include/list_column_reader.hpp                                   |   10 
 duckdb-0.8.0/duckdb/src/duckdb/extension/parquet/include/parquet_dbp_decoder.hpp                                  |    6 
 duckdb-0.8.0/duckdb/src/duckdb/extension/parquet/include/parquet_decimal_utils.hpp                                |    6 
 duckdb-0.8.0/duckdb/src/duckdb/extension/parquet/include/parquet_file_metadata_cache.hpp                          |    4 
 duckdb-0.8.0/duckdb/src/duckdb/extension/parquet/include/parquet_metadata.hpp                                     |    1 
 duckdb-0.8.0/duckdb/src/duckdb/extension/parquet/include/parquet_reader.hpp                                       |   80 
 duckdb-0.8.0/duckdb/src/duckdb/extension/parquet/include/parquet_statistics.hpp                                   |    4 
 duckdb-0.8.0/duckdb/src/duckdb/extension/parquet/include/parquet_support.hpp                                      |   19 
 duckdb-0.8.0/duckdb/src/duckdb/extension/parquet/include/parquet_timestamp.hpp                                    |    3 
 duckdb-0.8.0/duckdb/src/duckdb/extension/parquet/include/parquet_writer.hpp                                       |   17 
 duckdb-0.8.0/duckdb/src/duckdb/extension/parquet/include/row_number_column_reader.hpp                             |    9 
 duckdb-0.8.0/duckdb/src/duckdb/extension/parquet/include/string_column_reader.hpp                                 |    6 
 duckdb-0.8.0/duckdb/src/duckdb/extension/parquet/include/struct_column_reader.hpp                                 |   10 
 duckdb-0.8.0/duckdb/src/duckdb/extension/parquet/include/templated_column_reader.hpp                              |    3 
 duckdb-0.8.0/duckdb/src/duckdb/extension/parquet/include/thrift_tools.hpp                                         |    8 
 duckdb-0.8.0/duckdb/src/duckdb/extension/parquet/include/zstd_file_system.hpp                                     |    4 
 duckdb-0.8.0/duckdb/src/duckdb/extension/parquet/parquet-extension.cpp                                            |  455 
 duckdb-0.8.0/duckdb/src/duckdb/extension/parquet/parquet_metadata.cpp                                             |   96 
 duckdb-0.8.0/duckdb/src/duckdb/extension/parquet/parquet_reader.cpp                                               |  404 
 duckdb-0.8.0/duckdb/src/duckdb/extension/parquet/parquet_statistics.cpp                                           |  101 
 duckdb-0.8.0/duckdb/src/duckdb/extension/parquet/parquet_timestamp.cpp                                            |   22 
 duckdb-0.8.0/duckdb/src/duckdb/extension/parquet/parquet_writer.cpp                                               |   40 
 duckdb-0.8.0/duckdb/src/duckdb/extension/parquet/zstd_file_system.cpp                                             |    8 
 duckdb-0.8.0/duckdb/src/duckdb/src/catalog/catalog.cpp                                                            |  353 
 duckdb-0.8.0/duckdb/src/duckdb/src/catalog/catalog_entry.cpp                                                      |   37 
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 duckdb-0.8.0/duckdb/src/duckdb/src/catalog/catalog_entry/duck_schema_entry.cpp                                    |  192 
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 duckdb-0.8.0/duckdb/src/duckdb/src/catalog/catalog_entry/type_catalog_entry.cpp                                   |   26 
 duckdb-0.8.0/duckdb/src/duckdb/src/catalog/catalog_entry/view_catalog_entry.cpp                                   |   54 
 duckdb-0.8.0/duckdb/src/duckdb/src/catalog/catalog_search_path.cpp                                                |    9 
 duckdb-0.8.0/duckdb/src/duckdb/src/catalog/catalog_set.cpp                                                        |  266 
 duckdb-0.8.0/duckdb/src/duckdb/src/catalog/catalog_transaction.cpp                                                |    6 
 duckdb-0.8.0/duckdb/src/duckdb/src/catalog/default/default_functions.cpp                                          |   29 
 duckdb-0.8.0/duckdb/src/duckdb/src/catalog/default/default_schemas.cpp                                            |    2 
 duckdb-0.8.0/duckdb/src/duckdb/src/catalog/default/default_types.cpp                                              |    8 
 duckdb-0.8.0/duckdb/src/duckdb/src/catalog/default/default_views.cpp                                              |   10 
 duckdb-0.8.0/duckdb/src/duckdb/src/catalog/dependency_list.cpp                                                    |   17 
 duckdb-0.8.0/duckdb/src/duckdb/src/catalog/dependency_manager.cpp                                                 |   97 
 duckdb-0.8.0/duckdb/src/duckdb/src/catalog/duck_catalog.cpp                                                       |   90 
 duckdb-0.8.0/duckdb/src/duckdb/src/catalog/similar_catalog_entry.cpp                                              |    2 
 duckdb-0.8.0/duckdb/src/duckdb/src/common/adbc                                                                    |only
 duckdb-0.8.0/duckdb/src/duckdb/src/common/allocator.cpp                                                           |    4 
 duckdb-0.8.0/duckdb/src/duckdb/src/common/arrow/arrow_appender.cpp                                                |  228 
 duckdb-0.8.0/duckdb/src/duckdb/src/common/arrow/arrow_converter.cpp                                               |   55 
 duckdb-0.8.0/duckdb/src/duckdb/src/common/arrow/arrow_wrapper.cpp                                                 |   24 
 duckdb-0.8.0/duckdb/src/duckdb/src/common/box_renderer.cpp                                                        |  138 
 duckdb-0.8.0/duckdb/src/duckdb/src/common/compressed_file_system.cpp                                              |   19 
 duckdb-0.8.0/duckdb/src/duckdb/src/common/constants.cpp                                                           |   12 
 duckdb-0.8.0/duckdb/src/duckdb/src/common/enum_util.cpp                                                           |only
 duckdb-0.8.0/duckdb/src/duckdb/src/common/enums/date_part_specifier.cpp                                           |only
 duckdb-0.8.0/duckdb/src/duckdb/src/common/enums/expression_type.cpp                                               |  168 
 duckdb-0.8.0/duckdb/src/duckdb/src/common/enums/join_type.cpp                                                     |   30 
 duckdb-0.8.0/duckdb/src/duckdb/src/common/enums/logical_operator_type.cpp                                         |    4 
 duckdb-0.8.0/duckdb/src/duckdb/src/common/enums/physical_operator_type.cpp                                        |    8 
 duckdb-0.8.0/duckdb/src/duckdb/src/common/enums/statement_type.cpp                                                |    2 
 duckdb-0.8.0/duckdb/src/duckdb/src/common/exception.cpp                                                           |   39 
 duckdb-0.8.0/duckdb/src/duckdb/src/common/exception_format_value.cpp                                              |   16 
 duckdb-0.8.0/duckdb/src/duckdb/src/common/field_writer.cpp                                                        |    3 
 duckdb-0.8.0/duckdb/src/duckdb/src/common/file_buffer.cpp                                                         |    8 
 duckdb-0.8.0/duckdb/src/duckdb/src/common/file_system.cpp                                                         |  157 
 duckdb-0.8.0/duckdb/src/duckdb/src/common/filename_pattern.cpp                                                    |only
 duckdb-0.8.0/duckdb/src/duckdb/src/common/gzip_file_system.cpp                                                    |   74 
 duckdb-0.8.0/duckdb/src/duckdb/src/common/hive_partitioning.cpp                                                   |  169 
 duckdb-0.8.0/duckdb/src/duckdb/src/common/local_file_system.cpp                                                   |  111 
 duckdb-0.8.0/duckdb/src/duckdb/src/common/multi_file_reader.cpp                                                   |only
 duckdb-0.8.0/duckdb/src/duckdb/src/common/operator/cast_operators.cpp                                             |   51 
 duckdb-0.8.0/duckdb/src/duckdb/src/common/pipe_file_system.cpp                                                    |    3 
 duckdb-0.8.0/duckdb/src/duckdb/src/common/preserved_error.cpp                                                     |   12 
 duckdb-0.8.0/duckdb/src/duckdb/src/common/progress_bar/progress_bar.cpp                                           |    9 
 duckdb-0.8.0/duckdb/src/duckdb/src/common/radix_partitioning.cpp                                                  |  464 
 duckdb-0.8.0/duckdb/src/duckdb/src/common/random_engine.cpp                                                       |    2 
 duckdb-0.8.0/duckdb/src/duckdb/src/common/re2_regex.cpp                                                           |    8 
 duckdb-0.8.0/duckdb/src/duckdb/src/common/row_operations/row_aggregate.cpp                                        |   39 
 duckdb-0.8.0/duckdb/src/duckdb/src/common/row_operations/row_external.cpp                                         |    2 
 duckdb-0.8.0/duckdb/src/duckdb/src/common/row_operations/row_gather.cpp                                           |   12 
 duckdb-0.8.0/duckdb/src/duckdb/src/common/row_operations/row_heap_scatter.cpp                                     |    4 
 duckdb-0.8.0/duckdb/src/duckdb/src/common/row_operations/row_match.cpp                                            |  139 
 duckdb-0.8.0/duckdb/src/duckdb/src/common/row_operations/row_scatter.cpp                                          |   12 
 duckdb-0.8.0/duckdb/src/duckdb/src/common/serializer.cpp                                                          |    2 
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 duckdb-0.8.0/duckdb/src/duckdb/src/common/serializer/buffered_file_reader.cpp                                     |   24 
 duckdb-0.8.0/duckdb/src/duckdb/src/common/serializer/buffered_file_writer.cpp                                     |    6 
 duckdb-0.8.0/duckdb/src/duckdb/src/common/serializer/buffered_serializer.cpp                                      |    7 
 duckdb-0.8.0/duckdb/src/duckdb/src/common/sort/comparators.cpp                                                    |   19 
 duckdb-0.8.0/duckdb/src/duckdb/src/common/sort/merge_sorter.cpp                                                   |    6 
 duckdb-0.8.0/duckdb/src/duckdb/src/common/sort/partition_state.cpp                                                |only
 duckdb-0.8.0/duckdb/src/duckdb/src/common/sort/radix_sort.cpp                                                     |   10 
 duckdb-0.8.0/duckdb/src/duckdb/src/common/sort/sort_state.cpp                                                     |   37 
 duckdb-0.8.0/duckdb/src/duckdb/src/common/sort/sorted_block.cpp                                                   |   42 
 duckdb-0.8.0/duckdb/src/duckdb/src/common/string_util.cpp                                                         |   61 
 duckdb-0.8.0/duckdb/src/duckdb/src/common/tree_renderer.cpp                                                       |   16 
 duckdb-0.8.0/duckdb/src/duckdb/src/common/types.cpp                                                               |  501 
 duckdb-0.8.0/duckdb/src/duckdb/src/common/types/batched_data_collection.cpp                                       |    9 
 duckdb-0.8.0/duckdb/src/duckdb/src/common/types/bit.cpp                                                           |  281 
 duckdb-0.8.0/duckdb/src/duckdb/src/common/types/blob.cpp                                                          |   20 
 duckdb-0.8.0/duckdb/src/duckdb/src/common/types/chunk_collection.cpp                                              |    8 
 duckdb-0.8.0/duckdb/src/duckdb/src/common/types/column                                                            |only
 duckdb-0.8.0/duckdb/src/duckdb/src/common/types/conflict_manager.cpp                                              |    9 
 duckdb-0.8.0/duckdb/src/duckdb/src/common/types/data_chunk.cpp                                                    |    6 
 duckdb-0.8.0/duckdb/src/duckdb/src/common/types/date.cpp                                                          |    2 
 duckdb-0.8.0/duckdb/src/duckdb/src/common/types/decimal.cpp                                                       |    4 
 duckdb-0.8.0/duckdb/src/duckdb/src/common/types/hash.cpp                                                          |    2 
 duckdb-0.8.0/duckdb/src/duckdb/src/common/types/hyperloglog.cpp                                                   |    6 
 duckdb-0.8.0/duckdb/src/duckdb/src/common/types/interval.cpp                                                      |   41 
 duckdb-0.8.0/duckdb/src/duckdb/src/common/types/list_segment.cpp                                                  |only
 duckdb-0.8.0/duckdb/src/duckdb/src/common/types/row                                                               |only
 duckdb-0.8.0/duckdb/src/duckdb/src/common/types/selection_vector.cpp                                              |    2 
 duckdb-0.8.0/duckdb/src/duckdb/src/common/types/string_heap.cpp                                                   |    6 
 duckdb-0.8.0/duckdb/src/duckdb/src/common/types/string_type.cpp                                                   |    6 
 duckdb-0.8.0/duckdb/src/duckdb/src/common/types/time.cpp                                                          |   15 
 duckdb-0.8.0/duckdb/src/duckdb/src/common/types/timestamp.cpp                                                     |    2 
 duckdb-0.8.0/duckdb/src/duckdb/src/common/types/validity_mask.cpp                                                 |   31 
 duckdb-0.8.0/duckdb/src/duckdb/src/common/types/value.cpp                                                         |  487 
 duckdb-0.8.0/duckdb/src/duckdb/src/common/types/vector.cpp                                                        |  541 
 duckdb-0.8.0/duckdb/src/duckdb/src/common/types/vector_buffer.cpp                                                 |   20 
 duckdb-0.8.0/duckdb/src/duckdb/src/common/types/vector_cache.cpp                                                  |   18 
 duckdb-0.8.0/duckdb/src/duckdb/src/common/value_operations/comparison_operations.cpp                              |   36 
 duckdb-0.8.0/duckdb/src/duckdb/src/common/vector_operations/comparison_operators.cpp                              |   20 
 duckdb-0.8.0/duckdb/src/duckdb/src/common/vector_operations/is_distinct_from.cpp                                  |   25 
 duckdb-0.8.0/duckdb/src/duckdb/src/common/vector_operations/vector_cast.cpp                                       |    3 
 duckdb-0.8.0/duckdb/src/duckdb/src/common/vector_operations/vector_copy.cpp                                       |   25 
 duckdb-0.8.0/duckdb/src/duckdb/src/common/virtual_file_system.cpp                                                 |    6 
 duckdb-0.8.0/duckdb/src/duckdb/src/common/windows_util.cpp                                                        |    4 
 duckdb-0.8.0/duckdb/src/duckdb/src/core_functions                                                                 |only
 duckdb-0.8.0/duckdb/src/duckdb/src/execution/adaptive_filter.cpp                                                  |    2 
 duckdb-0.8.0/duckdb/src/duckdb/src/execution/aggregate_hashtable.cpp                                              |  678 
 duckdb-0.8.0/duckdb/src/duckdb/src/execution/column_binding_resolver.cpp                                          |   38 
 duckdb-0.8.0/duckdb/src/duckdb/src/execution/expression_executor.cpp                                              |    9 
 duckdb-0.8.0/duckdb/src/duckdb/src/execution/expression_executor/execute_between.cpp                              |    5 
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 duckdb-0.8.0/duckdb/src/duckdb/src/execution/expression_executor/execute_comparison.cpp                           |    6 
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 duckdb-0.8.0/duckdb/src/duckdb/src/execution/expression_executor/execute_constant.cpp                             |    2 
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 duckdb-0.8.0/duckdb/src/duckdb/src/execution/expression_executor/execute_operator.cpp                             |    2 
 duckdb-0.8.0/duckdb/src/duckdb/src/execution/expression_executor/execute_parameter.cpp                            |    2 
 duckdb-0.8.0/duckdb/src/duckdb/src/execution/expression_executor/execute_reference.cpp                            |    2 
 duckdb-0.8.0/duckdb/src/duckdb/src/execution/expression_executor_state.cpp                                        |    7 
 duckdb-0.8.0/duckdb/src/duckdb/src/execution/index/art/art.cpp                                                    |  604 
 duckdb-0.8.0/duckdb/src/duckdb/src/execution/index/art/art_key.cpp                                                |   58 
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 duckdb-0.8.0/duckdb/src/duckdb/src/execution/index/art/iterator.cpp                                               |  267 
 duckdb-0.8.0/duckdb/src/duckdb/src/execution/index/art/leaf.cpp                                                   |  484 
 duckdb-0.8.0/duckdb/src/duckdb/src/execution/index/art/leaf_segment.cpp                                           |only
 duckdb-0.8.0/duckdb/src/duckdb/src/execution/index/art/node.cpp                                                   |  827 
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 duckdb-0.8.0/duckdb/src/duckdb/src/execution/join_hashtable.cpp                                                   |  550 
 duckdb-0.8.0/duckdb/src/duckdb/src/execution/operator/aggregate/aggregate_object.cpp                              |   15 
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 duckdb-0.8.0/duckdb/src/duckdb/src/execution/operator/aggregate/physical_hash_aggregate.cpp                       |  186 
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 duckdb-0.8.0/duckdb/src/duckdb/src/execution/operator/aggregate/physical_streaming_window.cpp                     |   22 
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 duckdb-0.8.0/duckdb/src/duckdb/src/execution/operator/aggregate/physical_window.cpp                               | 1066 
 duckdb-0.8.0/duckdb/src/duckdb/src/execution/operator/filter/physical_filter.cpp                                  |    8 
 duckdb-0.8.0/duckdb/src/duckdb/src/execution/operator/helper/physical_batch_collector.cpp                         |   24 
 duckdb-0.8.0/duckdb/src/duckdb/src/execution/operator/helper/physical_execute.cpp                                 |   11 
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 duckdb-0.8.0/duckdb/src/duckdb/src/execution/operator/helper/physical_limit.cpp                                   |   41 
 duckdb-0.8.0/duckdb/src/duckdb/src/execution/operator/helper/physical_limit_percent.cpp                           |   42 
 duckdb-0.8.0/duckdb/src/duckdb/src/execution/operator/helper/physical_load.cpp                                    |    5 
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 duckdb-0.8.0/duckdb/src/duckdb/src/execution/operator/helper/physical_pragma.cpp                                  |    6 
 duckdb-0.8.0/duckdb/src/duckdb/src/execution/operator/helper/physical_prepare.cpp                                 |    6 
 duckdb-0.8.0/duckdb/src/duckdb/src/execution/operator/helper/physical_reservoir_sample.cpp                        |   26 
 duckdb-0.8.0/duckdb/src/duckdb/src/execution/operator/helper/physical_reset.cpp                                   |    7 
 duckdb-0.8.0/duckdb/src/duckdb/src/execution/operator/helper/physical_result_collector.cpp                        |   22 
 duckdb-0.8.0/duckdb/src/duckdb/src/execution/operator/helper/physical_set.cpp                                     |   13 
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 duckdb-0.8.0/duckdb/src/duckdb/src/execution/operator/helper/physical_transaction.cpp                             |    6 
 duckdb-0.8.0/duckdb/src/duckdb/src/execution/operator/helper/physical_vacuum.cpp                                  |   36 
 duckdb-0.8.0/duckdb/src/duckdb/src/execution/operator/join/outer_join_marker.cpp                                  |    2 
 duckdb-0.8.0/duckdb/src/duckdb/src/execution/operator/join/perfect_hash_join_executor.cpp                         |   61 
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 duckdb-0.8.0/duckdb/src/duckdb/src/execution/operator/join/physical_join.cpp                                      |   29 
 duckdb-0.8.0/duckdb/src/duckdb/src/execution/operator/join/physical_nested_loop_join.cpp                          |   60 
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 duckdb-0.8.0/duckdb/src/duckdb/src/execution/operator/join/physical_positional_join.cpp                           |   25 
 duckdb-0.8.0/duckdb/src/duckdb/src/execution/operator/join/physical_range_join.cpp                                |   10 
 duckdb-0.8.0/duckdb/src/duckdb/src/execution/operator/order/physical_order.cpp                                    |   52 
 duckdb-0.8.0/duckdb/src/duckdb/src/execution/operator/order/physical_top_n.cpp                                    |   40 
 duckdb-0.8.0/duckdb/src/duckdb/src/execution/operator/persistent/base_csv_reader.cpp                              |  183 
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 duckdb-0.8.0/duckdb/src/duckdb/src/execution/operator/projection/physical_unnest.cpp                              |   11 
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 duckdb-0.8.0/duckdb/src/duckdb/src/execution/operator/scan/physical_expression_scan.cpp                           |    2 
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 duckdb-0.8.0/duckdb/src/duckdb/src/execution/operator/schema/physical_alter.cpp                                   |   24 
 duckdb-0.8.0/duckdb/src/duckdb/src/execution/operator/schema/physical_attach.cpp                                  |   38 
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 duckdb-0.8.0/duckdb/src/duckdb/src/execution/operator/schema/physical_create_index.cpp                            |   74 
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 duckdb-0.8.0/duckdb/src/duckdb/src/execution/operator/schema/physical_drop.cpp                                    |   26 
 duckdb-0.8.0/duckdb/src/duckdb/src/execution/operator/set/physical_recursive_cte.cpp                              |   57 
 duckdb-0.8.0/duckdb/src/duckdb/src/execution/operator/set/physical_union.cpp                                      |   19 
 duckdb-0.8.0/duckdb/src/duckdb/src/execution/partitionable_hashtable.cpp                                          |   77 
 duckdb-0.8.0/duckdb/src/duckdb/src/execution/perfect_aggregate_hashtable.cpp                                      |   78 
 duckdb-0.8.0/duckdb/src/duckdb/src/execution/physical_operator.cpp                                                |   75 
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 duckdb-0.8.0/duckdb/src/duckdb/src/execution/physical_plan/plan_create_index.cpp                                  |   32 
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 duckdb-0.8.0/duckdb/src/duckdb/src/execution/physical_plan/plan_export.cpp                                        |    4 
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 duckdb-0.8.0/duckdb/src/duckdb/src/execution/physical_plan/plan_filter.cpp                                        |    6 
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 duckdb-0.8.0/duckdb/src/duckdb/src/execution/physical_plan/plan_reset.cpp                                         |    2 
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 duckdb-0.8.0/duckdb/src/duckdb/src/execution/physical_plan/plan_set.cpp                                           |    2 
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 duckdb-0.8.0/duckdb/src/duckdb/src/execution/physical_plan/plan_top_n.cpp                                         |    2 
 duckdb-0.8.0/duckdb/src/duckdb/src/execution/physical_plan/plan_unnest.cpp                                        |    2 
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 duckdb-0.8.0/duckdb/src/duckdb/src/execution/physical_plan/plan_window.cpp                                        |   26 
 duckdb-0.8.0/duckdb/src/duckdb/src/execution/physical_plan_generator.cpp                                          |   96 
 duckdb-0.8.0/duckdb/src/duckdb/src/execution/radix_partitioned_hashtable.cpp                                      |  165 
 duckdb-0.8.0/duckdb/src/duckdb/src/execution/reservoir_sample.cpp                                                 |    6 
 duckdb-0.8.0/duckdb/src/duckdb/src/execution/window_segment_tree.cpp                                              |  228 
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 duckdb-0.8.0/duckdb/src/duckdb/src/function/built_in_functions.cpp                                                |   20 
 duckdb-0.8.0/duckdb/src/duckdb/src/function/cast/bit_cast.cpp                                                     |    2 
 duckdb-0.8.0/duckdb/src/duckdb/src/function/cast/blob_cast.cpp                                                    |    1 
 duckdb-0.8.0/duckdb/src/duckdb/src/function/cast/cast_function_set.cpp                                            |  119 
 duckdb-0.8.0/duckdb/src/duckdb/src/function/cast/enum_casts.cpp                                                   |   34 
 duckdb-0.8.0/duckdb/src/duckdb/src/function/cast/list_casts.cpp                                                   |   27 
 duckdb-0.8.0/duckdb/src/duckdb/src/function/cast/map_cast.cpp                                                     |    9 
 duckdb-0.8.0/duckdb/src/duckdb/src/function/cast/string_cast.cpp                                                  |   54 
 duckdb-0.8.0/duckdb/src/duckdb/src/function/cast/struct_cast.cpp                                                  |   36 
 duckdb-0.8.0/duckdb/src/duckdb/src/function/cast/time_casts.cpp                                                   |    4 
 duckdb-0.8.0/duckdb/src/duckdb/src/function/cast/union_casts.cpp                                                  |   54 
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 duckdb-0.8.0/duckdb/src/duckdb/src/function/cast_rules.cpp                                                        |   13 
 duckdb-0.8.0/duckdb/src/duckdb/src/function/compression_config.cpp                                                |   18 
 duckdb-0.8.0/duckdb/src/duckdb/src/function/function.cpp                                                          |   16 
 duckdb-0.8.0/duckdb/src/duckdb/src/function/function_binder.cpp                                                   |   26 
 duckdb-0.8.0/duckdb/src/duckdb/src/function/function_set.cpp                                                      |   25 
 duckdb-0.8.0/duckdb/src/duckdb/src/function/macro_function.cpp                                                    |   49 
 duckdb-0.8.0/duckdb/src/duckdb/src/function/pragma/pragma_queries.cpp                                             |   46 
 duckdb-0.8.0/duckdb/src/duckdb/src/function/pragma_function.cpp                                                   |    2 
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 duckdb-0.8.0/duckdb/src/duckdb/src/function/scalar/list/list_extract.cpp                                          |   19 
 duckdb-0.8.0/duckdb/src/duckdb/src/function/scalar/nested_functions.cpp                                           |   19 
 duckdb-0.8.0/duckdb/src/duckdb/src/function/scalar/operators.cpp                                                  |    6 
 duckdb-0.8.0/duckdb/src/duckdb/src/function/scalar/operators/add.cpp                                              |    9 
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 duckdb-0.8.0/duckdb/src/duckdb/src/function/scalar/sequence/nextval.cpp                                           |   81 
 duckdb-0.8.0/duckdb/src/duckdb/src/function/scalar/strftime_format.cpp                                            |only
 duckdb-0.8.0/duckdb/src/duckdb/src/function/scalar/string/caseconvert.cpp                                         |   12 
 duckdb-0.8.0/duckdb/src/duckdb/src/function/scalar/string/concat.cpp                                              |   14 
 duckdb-0.8.0/duckdb/src/duckdb/src/function/scalar/string/contains.cpp                                            |    4 
 duckdb-0.8.0/duckdb/src/duckdb/src/function/scalar/string/length.cpp                                              |   27 
 duckdb-0.8.0/duckdb/src/duckdb/src/function/scalar/string/like.cpp                                                |   41 
 duckdb-0.8.0/duckdb/src/duckdb/src/function/scalar/string/nfc_normalize.cpp                                       |    2 
 duckdb-0.8.0/duckdb/src/duckdb/src/function/scalar/string/prefix.cpp                                              |    4 
 duckdb-0.8.0/duckdb/src/duckdb/src/function/scalar/string/regexp                                                  |only
 duckdb-0.8.0/duckdb/src/duckdb/src/function/scalar/string/regexp.cpp                                              |  308 
 duckdb-0.8.0/duckdb/src/duckdb/src/function/scalar/string/strip_accents.cpp                                       |    4 
 duckdb-0.8.0/duckdb/src/duckdb/src/function/scalar/string/substring.cpp                                           |   14 
 duckdb-0.8.0/duckdb/src/duckdb/src/function/scalar/string/suffix.cpp                                              |    4 
 duckdb-0.8.0/duckdb/src/duckdb/src/function/scalar/string_functions.cpp                                           |   37 
 duckdb-0.8.0/duckdb/src/duckdb/src/function/scalar/struct/struct_extract.cpp                                      |   25 
 duckdb-0.8.0/duckdb/src/duckdb/src/function/scalar/system/aggregate_export.cpp                                    |   63 
 duckdb-0.8.0/duckdb/src/duckdb/src/function/scalar_macro_function.cpp                                             |   18 
 duckdb-0.8.0/duckdb/src/duckdb/src/function/table/arrow.cpp                                                       |  106 
 duckdb-0.8.0/duckdb/src/duckdb/src/function/table/arrow_conversion.cpp                                            |  170 
 duckdb-0.8.0/duckdb/src/duckdb/src/function/table/checkpoint.cpp                                                  |   20 
 duckdb-0.8.0/duckdb/src/duckdb/src/function/table/copy_csv.cpp                                                    |  215 
 duckdb-0.8.0/duckdb/src/duckdb/src/function/table/glob.cpp                                                        |   19 
 duckdb-0.8.0/duckdb/src/duckdb/src/function/table/pragma_detailed_profiling_output.cpp                            |   29 
 duckdb-0.8.0/duckdb/src/duckdb/src/function/table/pragma_last_profiling_output.cpp                                |   24 
 duckdb-0.8.0/duckdb/src/duckdb/src/function/table/range.cpp                                                       |   21 
 duckdb-0.8.0/duckdb/src/duckdb/src/function/table/read_csv.cpp                                                    |  802 
 duckdb-0.8.0/duckdb/src/duckdb/src/function/table/repeat.cpp                                                      |    8 
 duckdb-0.8.0/duckdb/src/duckdb/src/function/table/repeat_row.cpp                                                  |only
 duckdb-0.8.0/duckdb/src/duckdb/src/function/table/summary.cpp                                                     |    2 
 duckdb-0.8.0/duckdb/src/duckdb/src/function/table/system/duckdb_columns.cpp                                       |   61 
 duckdb-0.8.0/duckdb/src/duckdb/src/function/table/system/duckdb_constraints.cpp                                   |   61 
 duckdb-0.8.0/duckdb/src/duckdb/src/function/table/system/duckdb_databases.cpp                                     |    8 
 duckdb-0.8.0/duckdb/src/duckdb/src/function/table/system/duckdb_dependencies.cpp                                  |   26 
 duckdb-0.8.0/duckdb/src/duckdb/src/function/table/system/duckdb_extensions.cpp                                    |    8 
 duckdb-0.8.0/duckdb/src/duckdb/src/function/table/system/duckdb_functions.cpp                                     |  124 
 duckdb-0.8.0/duckdb/src/duckdb/src/function/table/system/duckdb_indexes.cpp                                       |   29 
 duckdb-0.8.0/duckdb/src/duckdb/src/function/table/system/duckdb_keywords.cpp                                      |    4 
 duckdb-0.8.0/duckdb/src/duckdb/src/function/table/system/duckdb_schemas.cpp                                       |   18 
 duckdb-0.8.0/duckdb/src/duckdb/src/function/table/system/duckdb_sequences.cpp                                     |   21 
 duckdb-0.8.0/duckdb/src/duckdb/src/function/table/system/duckdb_settings.cpp                                      |    7 
 duckdb-0.8.0/duckdb/src/duckdb/src/function/table/system/duckdb_tables.cpp                                        |   25 
 duckdb-0.8.0/duckdb/src/duckdb/src/function/table/system/duckdb_temporary_files.cpp                               |    4 
 duckdb-0.8.0/duckdb/src/duckdb/src/function/table/system/duckdb_types.cpp                                         |   33 
 duckdb-0.8.0/duckdb/src/duckdb/src/function/table/system/duckdb_views.cpp                                         |   23 
 duckdb-0.8.0/duckdb/src/duckdb/src/function/table/system/pragma_collations.cpp                                    |    8 
 duckdb-0.8.0/duckdb/src/duckdb/src/function/table/system/pragma_database_size.cpp                                 |   14 
 duckdb-0.8.0/duckdb/src/duckdb/src/function/table/system/pragma_storage_info.cpp                                  |   20 
 duckdb-0.8.0/duckdb/src/duckdb/src/function/table/system/pragma_table_info.cpp                                    |   47 
 duckdb-0.8.0/duckdb/src/duckdb/src/function/table/system/test_all_types.cpp                                       |   12 
 duckdb-0.8.0/duckdb/src/duckdb/src/function/table/system/test_vector_types.cpp                                    |   12 
 duckdb-0.8.0/duckdb/src/duckdb/src/function/table/table_scan.cpp                                                  |  187 
 duckdb-0.8.0/duckdb/src/duckdb/src/function/table/unnest.cpp                                                      |   20 
 duckdb-0.8.0/duckdb/src/duckdb/src/function/table/version/pragma_version.cpp                                      |   14 
 duckdb-0.8.0/duckdb/src/duckdb/src/function/table_function.cpp                                                    |   41 
 duckdb-0.8.0/duckdb/src/duckdb/src/function/table_macro_function.cpp                                              |   16 
 duckdb-0.8.0/duckdb/src/duckdb/src/function/udf_function.cpp                                                      |    4 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb.h                                                               |   99 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb.hpp                                                             |    1 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/catalog/catalog.hpp                                             |  228 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_entry.hpp                                       |   52 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_entry/aggregate_function_catalog_entry.hpp      |    9 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_entry/collate_catalog_entry.hpp                 |    6 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_entry/column_dependency_manager.hpp             |    2 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_entry/copy_function_catalog_entry.hpp           |    2 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_entry/duck_index_entry.hpp                      |    6 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_entry/duck_schema_entry.hpp                     |   44 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_entry/duck_table_entry.hpp                      |   13 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_entry/function_entry.hpp                        |only
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_entry/index_catalog_entry.hpp                   |   12 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_entry/macro_catalog_entry.hpp                   |   15 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_entry/pragma_function_catalog_entry.hpp         |    6 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_entry/scalar_function_catalog_entry.hpp         |    8 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_entry/scalar_macro_catalog_entry.hpp            |    8 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_entry/schema_catalog_entry.hpp                  |   43 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_entry/sequence_catalog_entry.hpp                |    6 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_entry/table_catalog_entry.hpp                   |   15 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_entry/table_function_catalog_entry.hpp          |   20 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_entry/table_macro_catalog_entry.hpp             |    8 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_entry/type_catalog_entry.hpp                    |    6 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_entry/view_catalog_entry.hpp                    |   12 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_entry_map.hpp                                   |only
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_search_path.hpp                                 |    2 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_set.hpp                                         |   49 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_transaction.hpp                                 |    9 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/catalog/default/default_functions.hpp                           |    4 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/catalog/default/default_types.hpp                               |    4 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/catalog/default/default_views.hpp                               |    4 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/catalog/dependency.hpp                                          |    9 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/catalog/dependency_list.hpp                                     |   10 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/catalog/dependency_manager.hpp                                  |   19 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/catalog/duck_catalog.hpp                                        |   19 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/catalog/similar_catalog_entry.hpp                               |    5 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/catalog/standard_entry.hpp                                      |   14 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/adbc                                                     |only
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/algorithm.hpp                                            |    1 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/allocator.hpp                                            |    6 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/arrow/arrow_appender.hpp                                 |    6 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/arrow/arrow_converter.hpp                                |    8 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/arrow/arrow_options.hpp                                  |only
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/bit_utils.hpp                                            |only
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/box_renderer.hpp                                         |   10 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/case_insensitive_map.hpp                                 |    5 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/common.hpp                                               |    1 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/compressed_file_system.hpp                               |    7 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/constants.hpp                                            |   54 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/crypto/md5.hpp                                           |    2 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/enum_util.hpp                                            |only
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/enums/aggregate_handling.hpp                             |    2 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/enums/debug_initialize.hpp                               |only
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/enums/expression_type.hpp                                |    5 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/enums/file_glob_options.hpp                              |only
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/enums/join_type.hpp                                      |    6 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/enums/joinref_type.hpp                                   |   11 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/enums/logical_operator_type.hpp                          |    2 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/enums/on_entry_not_found.hpp                             |only
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/enums/operator_result_type.hpp                           |   20 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/enums/order_preservation_type.hpp                        |only
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/enums/order_type.hpp                                     |   10 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/enums/physical_operator_type.hpp                         |    5 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/enums/set_operation_type.hpp                             |    3 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/enums/statement_type.hpp                                 |    3 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/enums/tableref_type.hpp                                  |    3 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/exception.hpp                                            |   92 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/exception_format_value.hpp                               |   37 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/fast_mem.hpp                                             |  528 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/field_writer.hpp                                         |   22 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/file_buffer.hpp                                          |    3 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/file_opener.hpp                                          |    1 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/file_system.hpp                                          |   29 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/filename_pattern.hpp                                     |only
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/gzip_file_system.hpp                                     |    5 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/helper.hpp                                               |   92 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/hive_partitioning.hpp                                    |   22 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/http_state.hpp                                           |only
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/hugeint.hpp                                              |only
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/limits.hpp                                               |   92 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/memory_safety.hpp                                        |only
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/multi_file_reader.hpp                                    |only
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/multi_file_reader_options.hpp                            |only
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/opener_file_system.hpp                                   |only
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/operator/cast_operators.hpp                              |   16 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/operator/comparison_operators.hpp                        |  194 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/operator/convert_to_string.hpp                           |    2 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/operator/decimal_cast_operators.hpp                      |    6 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/operator/multiply.hpp                                    |    2 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/operator/string_cast.hpp                                 |    2 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/operator/subtract.hpp                                    |    2 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/optional_idx.hpp                                         |only
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/optional_ptr.hpp                                         |only
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/perfect_map_set.hpp                                      |only
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/preserved_error.hpp                                      |    7 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/progress_bar/progress_bar.hpp                            |    2 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/queue.hpp                                                |    2 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/radix.hpp                                                |    2 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/radix_partitioning.hpp                                   |  110 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/re2_regex.hpp                                            |    8 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/reference_map.hpp                                        |only
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/row_operations/row_operations.hpp                        |   30 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/serializer.hpp                                           |   13 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/serializer/binary_deserializer.hpp                       |only
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 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/serializer/buffered_deserializer.hpp                     |    6 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/serializer/buffered_file_reader.hpp                      |   13 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/serializer/buffered_file_writer.hpp                      |    5 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/serializer/buffered_serializer.hpp                       |    5 
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 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/set.hpp                                                  |    3 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/shared_ptr.hpp                                           |only
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/sort/comparators.hpp                                     |    2 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/sort/duckdb_pdqsort.hpp                                  |   17 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/sort/partition_state.hpp                                 |only
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/sort/sort.hpp                                            |    2 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/sort/sorted_block.hpp                                    |    4 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/string_util.hpp                                          |   71 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/typedefs.hpp                                             |only
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/types.hpp                                                |  115 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/types/arrow_aux_data.hpp                                 |    3 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/types/batched_data_collection.hpp                        |    2 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/types/bit.hpp                                            |   19 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/types/chunk_collection.hpp                               |   20 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/types/column                                             |only
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/types/conflict_manager.hpp                               |    5 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/types/data_chunk.hpp                                     |    3 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/types/interval.hpp                                       |   42 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/types/list_segment.hpp                                   |only
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/types/row                                                |only
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/types/selection_vector.hpp                               |    4 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/types/string_type.hpp                                    |   86 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/types/time.hpp                                           |    3 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/types/type_map.hpp                                       |   20 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/types/validity_mask.hpp                                  |   14 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/types/value.hpp                                          |   81 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/types/value_map.hpp                                      |    2 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/types/vector.hpp                                         |   16 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/types/vector_buffer.hpp                                  |   45 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/union_by_name.hpp                                        |   83 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/unique_ptr.hpp                                           |only
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/vector.hpp                                               |   97 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/vector_operations/aggregate_executor.hpp                 |    4 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/vector_operations/unary_executor.hpp                     |    4 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/winapi.hpp                                               |    2 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/core_functions                                                  |only
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/aggregate_hashtable.hpp                               |  117 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/base_aggregate_hashtable.hpp                          |    4 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/execution_context.hpp                                 |    5 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/executor.hpp                                          |   25 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/expression_executor.hpp                               |    2 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/expression_executor_state.hpp                         |    6 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/index/art/art.hpp                                     |  115 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/index/art/art_key.hpp                                 |   55 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/index/art/fixed_size_allocator.hpp                    |only
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/index/art/iterator.hpp                                |   46 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/index/art/leaf.hpp                                    |  104 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/index/art/leaf_segment.hpp                            |only
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/index/art/node.hpp                                    |  214 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/index/art/node16.hpp                                  |   84 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/index/art/node256.hpp                                 |   87 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/index/art/node4.hpp                                   |   82 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/index/art/node48.hpp                                  |   92 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/index/art/prefix.hpp                                  |  111 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/index/art/prefix_segment.hpp                          |only
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/index/art/swizzleable_pointer.hpp                     |   69 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/join_hashtable.hpp                                    |  116 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/nested_loop_join.hpp                                  |    2 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/aggregate/aggregate_object.hpp               |   17 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/aggregate/distinct_aggregate_data.hpp        |    4 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/aggregate/grouped_aggregate_data.hpp         |    4 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/aggregate/physical_hash_aggregate.hpp        |   33 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/aggregate/physical_perfecthash_aggregate.hpp |   20 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/aggregate/physical_streaming_window.hpp      |    7 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/aggregate/physical_ungrouped_aggregate.hpp   |   19 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/aggregate/physical_window.hpp                |   18 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/filter/physical_filter.hpp                   |    3 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/helper/physical_batch_collector.hpp          |    3 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/helper/physical_execute.hpp                  |   10 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/helper/physical_explain_analyze.hpp          |   14 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/helper/physical_limit.hpp                    |   15 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/helper/physical_limit_percent.hpp            |   15 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/helper/physical_load.hpp                     |   10 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/helper/physical_materialized_collector.hpp   |    4 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/helper/physical_pragma.hpp                   |   10 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/helper/physical_prepare.hpp                  |   10 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/helper/physical_reservoir_sample.hpp         |   10 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/helper/physical_reset.hpp                    |   10 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/helper/physical_result_collector.hpp         |    9 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/helper/physical_set.hpp                      |   10 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/helper/physical_streaming_limit.hpp          |    5 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/helper/physical_streaming_sample.hpp         |    3 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/helper/physical_transaction.hpp              |   10 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/helper/physical_vacuum.hpp                   |   13 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/join/outer_join_marker.hpp                   |   13 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/join/perfect_hash_join_executor.hpp          |    6 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/join/physical_asof_join.hpp                  |only
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/join/physical_blockwise_nl_join.hpp          |    9 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/join/physical_cross_product.hpp              |   23 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/join/physical_delim_join.hpp                 |   17 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/join/physical_hash_join.hpp                  |   11 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/join/physical_iejoin.hpp                     |    9 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/join/physical_index_join.hpp                 |   16 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/join/physical_join.hpp                       |   13 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/join/physical_nested_loop_join.hpp           |   13 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/join/physical_piecewise_merge_join.hpp       |    9 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/join/physical_positional_join.hpp            |   13 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/join/physical_range_join.hpp                 |    2 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/order/physical_order.hpp                     |   18 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/order/physical_top_n.hpp                     |   16 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/persistent/base_csv_reader.hpp               |   45 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/persistent/buffered_csv_reader.hpp           |   12 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/persistent/csv_buffer.hpp                    |   11 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/persistent/csv_file_handle.hpp               |  165 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/persistent/csv_line_info.hpp                 |only
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/persistent/csv_reader_options.hpp            |   44 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/persistent/parallel_csv_reader.hpp           |   49 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/persistent/physical_batch_copy_to_file.hpp   |only
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/persistent/physical_batch_insert.hpp         |   23 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/persistent/physical_copy_to_file.hpp         |   23 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/persistent/physical_delete.hpp               |   13 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/persistent/physical_export.hpp               |   15 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/persistent/physical_fixed_batch_copy.hpp     |only
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/persistent/physical_insert.hpp               |   35 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/persistent/physical_update.hpp               |   13 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/projection/physical_pivot.hpp                |only
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/projection/physical_projection.hpp           |    8 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/projection/physical_tableinout_function.hpp  |    6 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/projection/physical_unnest.hpp               |    4 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/scan/physical_column_data_scan.hpp           |   19 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/scan/physical_dummy_scan.hpp                 |   11 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/scan/physical_empty_result.hpp               |   10 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/scan/physical_expression_scan.hpp            |    3 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/scan/physical_positional_scan.hpp            |   10 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/scan/physical_table_scan.hpp                 |    9 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/schema/physical_alter.hpp                    |   11 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/schema/physical_attach.hpp                   |   11 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/schema/physical_create_function.hpp          |   11 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/schema/physical_create_index.hpp             |   13 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/schema/physical_create_schema.hpp            |   11 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/schema/physical_create_sequence.hpp          |   11 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/schema/physical_create_table.hpp             |   15 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/schema/physical_create_type.hpp              |   20 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/schema/physical_create_view.hpp              |   11 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/schema/physical_detach.hpp                   |   11 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/schema/physical_drop.hpp                     |   11 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/set/physical_recursive_cte.hpp               |   17 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/set/physical_union.hpp                       |    6 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/partitionable_hashtable.hpp                           |   16 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/perfect_aggregate_hashtable.hpp                       |    8 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/physical_operator.hpp                                 |  118 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/physical_operator_states.hpp                          |only
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/physical_plan_generator.hpp                           |    5 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/radix_partitioned_hashtable.hpp                       |   12 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/window_segment_tree.hpp                               |   62 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/function/aggregate/distributive_functions.hpp                   |   80 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/function/aggregate_function.hpp                                 |   57 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/function/built_in_functions.hpp                                 |    8 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/function/cast/bound_cast_data.hpp                               |only
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/function/cast/cast_function_set.hpp                             |    6 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/function/cast/default_casts.hpp                                 |  107 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/function/cast/vector_cast_helpers.hpp                           |    4 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/function/copy_function.hpp                                      |   60 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/function/function.hpp                                           |   26 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/function/function_binder.hpp                                    |    9 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/function/function_serialization.hpp                             |    8 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/function/function_set.hpp                                       |    9 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/function/macro_function.hpp                                     |   31 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/function/pragma_function.hpp                                    |    2 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/function/scalar/generic_functions.hpp                           |   33 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/function/scalar/list                                            |only
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/function/scalar/nested_functions.hpp                            |  127 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/function/scalar/operators.hpp                                   |   24 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/function/scalar/regexp.hpp                                      |   82 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/function/scalar/strftime_format.hpp                             |only
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/function/scalar/string_functions.hpp                            |   94 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/function/scalar_function.hpp                                    |   20 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/function/scalar_macro_function.hpp                              |   14 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/function/table/arrow.hpp                                        |   21 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/function/table/range.hpp                                        |    4 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/function/table/read_csv.hpp                                     |   49 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/function/table/table_scan.hpp                                   |    9 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/function/table_function.hpp                                     |   78 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/function/table_macro_function.hpp                               |   14 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/function/udf_function.hpp                                       |  106 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/main/appender.hpp                                               |    4 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/main/attached_database.hpp                                      |    2 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/main/capi/capi_internal.hpp                                     |    2 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/main/capi/cast/utils.hpp                                        |    2 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/main/client_config.hpp                                          |   16 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/main/client_context.hpp                                         |    6 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/main/client_data.hpp                                            |   15 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/main/config.hpp                                                 |   26 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/main/connection.hpp                                             |   17 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/main/connection_manager.hpp                                     |    2 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/main/database.hpp                                               |    4 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/main/database_manager.hpp                                       |   13 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/main/database_path_and_type.hpp                                 |only
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/main/extension_entries.hpp                                      |   66 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/main/extension_helper.hpp                                       |   12 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/main/extension_util.hpp                                         |only
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/main/materialized_query_result.hpp                              |    2 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/main/prepared_statement.hpp                                     |    2 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/main/query_profiler.hpp                                         |   19 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/main/query_result.hpp                                           |   30 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/main/relation.hpp                                               |   16 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/main/relation/explain_relation.hpp                              |    3 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/main/relation/setop_relation.hpp                                |    1 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/main/settings.hpp                                               |   39 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/optimizer/cse_optimizer.hpp                                     |    2 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/optimizer/expression_rewriter.hpp                               |    6 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/optimizer/filter_combiner.hpp                                   |   18 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/optimizer/filter_pushdown.hpp                                   |    2 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/optimizer/join_order/cardinality_estimator.hpp                  |   32 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/optimizer/join_order/join_node.hpp                              |   16 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/optimizer/join_order/join_order_optimizer.hpp                   |   38 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/optimizer/join_order/join_relation.hpp                          |   23 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/optimizer/join_order/query_graph.hpp                            |   29 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/optimizer/matcher/expression_matcher.hpp                        |   22 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/optimizer/matcher/set_matcher.hpp                               |   16 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/optimizer/optimizer_extension.hpp                               |    2 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/optimizer/rule.hpp                                              |    4 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/optimizer/rule/arithmetic_simplification.hpp                    |    2 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/optimizer/rule/case_simplification.hpp                          |    2 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/optimizer/rule/comparison_simplification.hpp                    |    2 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/optimizer/rule/conjunction_simplification.hpp                   |    4 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/optimizer/rule/constant_folding.hpp                             |    2 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/optimizer/rule/date_part_simplification.hpp                     |    2 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/optimizer/rule/distributivity.hpp                               |    2 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/optimizer/rule/empty_needle_removal.hpp                         |    2 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/optimizer/rule/enum_comparison.hpp                              |    2 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/optimizer/rule/equal_or_null_simplification.hpp                 |    2 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/optimizer/rule/in_clause_simplification.hpp                     |    2 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/optimizer/rule/like_optimizations.hpp                           |    4 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/optimizer/rule/list.hpp                                         |    1 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/optimizer/rule/move_constants.hpp                               |    2 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/optimizer/rule/ordered_aggregate_optimizer.hpp                  |only
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/optimizer/rule/regex_optimizations.hpp                          |    2 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parallel/concurrentqueue.hpp                                    |    2 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parallel/event.hpp                                              |    2 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parallel/interrupt.hpp                                          |only
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parallel/meta_pipeline.hpp                                      |   10 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parallel/pipeline.hpp                                           |   54 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parallel/pipeline_executor.hpp                                  |   62 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parallel/task.hpp                                               |   23 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parallel/task_counter.hpp                                       |    4 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parallel/task_scheduler.hpp                                     |    4 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/base_expression.hpp                                      |   20 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/column_list.hpp                                          |   14 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/common_table_expression_info.hpp                         |    4 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/constraint.hpp                                           |   18 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/constraints/check_constraint.hpp                         |    3 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/constraints/foreign_key_constraint.hpp                   |    3 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/constraints/not_null_constraint.hpp                      |    3 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/constraints/unique_constraint.hpp                        |    3 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/expression/between_expression.hpp                        |    6 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/expression/bound_expression.hpp                          |    7 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/expression/case_expression.hpp                           |    8 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/expression/cast_expression.hpp                           |    5 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/expression/collate_expression.hpp                        |    5 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/expression/columnref_expression.hpp                      |    5 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/expression/comparison_expression.hpp                     |    5 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/expression/conjunction_expression.hpp                    |    5 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/expression/constant_expression.hpp                       |    6 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/expression/default_expression.hpp                        |    4 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/expression/function_expression.hpp                       |   11 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/expression/lambda_expression.hpp                         |    5 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/expression/operator_expression.hpp                       |    9 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/expression/parameter_expression.hpp                      |    5 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/expression/positional_reference_expression.hpp           |    5 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/expression/star_expression.hpp                           |    9 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/expression/subquery_expression.hpp                       |    5 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/expression/window_expression.hpp                         |   16 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/expression_map.hpp                                       |   25 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/expression_util.hpp                                      |    2 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/keyword_helper.hpp                                       |    9 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/alter_info.hpp                               |   18 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/alter_scalar_function_info.hpp               |only
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/alter_table_function_info.hpp                |only
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/alter_table_info.hpp                         |    8 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/attach_info.hpp                              |   11 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/copy_info.hpp                                |    2 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/create_database_info.hpp                     |    4 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/create_function_info.hpp                     |    6 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/create_macro_info.hpp                        |   20 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/create_schema_info.hpp                       |    4 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/create_sequence_info.hpp                     |   26 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/create_table_function_info.hpp               |    3 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/create_table_info.hpp                        |    2 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/create_type_info.hpp                         |   24 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/create_view_info.hpp                         |    2 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/detach_info.hpp                              |   15 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/drop_info.hpp                                |   44 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/exported_table_data.hpp                      |    8 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/load_info.hpp                                |    4 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/parse_info.hpp                               |   13 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/pragma_info.hpp                              |    2 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/sample_options.hpp                           |    3 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/show_select_info.hpp                         |    2 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/transaction_info.hpp                         |    7 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/vacuum_info.hpp                              |   23 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/parsed_expression.hpp                                    |    5 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/parser.hpp                                               |    8 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/parser_extension.hpp                                     |    4 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/parser_options.hpp                                       |only
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/query_error_context.hpp                                  |    6 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/query_node.hpp                                           |   33 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/query_node/list.hpp                                      |only
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/query_node/recursive_cte_node.hpp                        |    6 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/query_node/select_node.hpp                               |    8 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/query_node/set_operation_node.hpp                        |    6 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/result_modifier.hpp                                      |   25 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/sql_statement.hpp                                        |   23 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/statement/alter_statement.hpp                            |    3 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/statement/attach_statement.hpp                           |    3 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/statement/call_statement.hpp                             |    3 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/statement/copy_statement.hpp                             |    3 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/statement/create_statement.hpp                           |    3 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/statement/delete_statement.hpp                           |    3 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/statement/detach_statement.hpp                           |    3 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/statement/drop_statement.hpp                             |    3 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/statement/execute_statement.hpp                          |    3 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/statement/explain_statement.hpp                          |    3 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/statement/export_statement.hpp                           |    3 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/statement/extension_statement.hpp                        |    3 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/statement/insert_statement.hpp                           |   13 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/statement/list.hpp                                       |    1 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/statement/load_statement.hpp                             |    3 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/statement/logical_plan_statement.hpp                     |    3 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/statement/multi_statement.hpp                            |only
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/statement/pragma_statement.hpp                           |    3 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/statement/prepare_statement.hpp                          |    3 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/statement/relation_statement.hpp                         |    3 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/statement/select_statement.hpp                           |   12 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/statement/set_statement.hpp                              |    3 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/statement/show_statement.hpp                             |    3 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/statement/transaction_statement.hpp                      |    3 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/statement/update_statement.hpp                           |    3 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/statement/vacuum_statement.hpp                           |    3 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/tableref.hpp                                             |   24 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/tableref/basetableref.hpp                                |    7 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/tableref/emptytableref.hpp                               |    5 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/tableref/expressionlistref.hpp                           |    6 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/tableref/joinref.hpp                                     |    6 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/tableref/list.hpp                                        |    1 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/tableref/pivotref.hpp                                    |only
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/tableref/subqueryref.hpp                                 |    6 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/tableref/table_function_ref.hpp                          |    6 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/tokens.hpp                                               |    2 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/transformer.hpp                                          |   99 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/bind_context.hpp                                        |   33 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/binder.hpp                                              |   89 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/bound_constraint.hpp                                    |   20 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/bound_query_node.hpp                                    |   17 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/bound_result_modifier.hpp                               |    9 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/bound_tableref.hpp                                      |   17 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/bound_tokens.hpp                                        |    1 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/column_binding.hpp                                      |    6 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/constraints/bound_check_constraint.hpp                  |    3 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/constraints/bound_foreign_key_constraint.hpp            |    3 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/constraints/bound_not_null_constraint.hpp               |    3 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/constraints/bound_unique_constraint.hpp                 |    3 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/expression.hpp                                          |    7 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/expression/bound_aggregate_expression.hpp               |    7 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/expression/bound_between_expression.hpp                 |    3 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/expression/bound_case_expression.hpp                    |    3 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/expression/bound_cast_expression.hpp                    |    3 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/expression/bound_columnref_expression.hpp               |    4 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/expression/bound_comparison_expression.hpp              |    3 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/expression/bound_conjunction_expression.hpp             |    3 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/expression/bound_constant_expression.hpp                |    3 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/expression/bound_default_expression.hpp                 |    5 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/expression/bound_function_expression.hpp                |    3 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/expression/bound_lambda_expression.hpp                  |    3 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/expression/bound_lambdaref_expression.hpp               |    3 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/expression/bound_operator_expression.hpp                |    3 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/expression/bound_parameter_expression.hpp               |    3 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/expression/bound_reference_expression.hpp               |    3 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/expression/bound_subquery_expression.hpp                |    3 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/expression/bound_unnest_expression.hpp                  |    3 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/expression/bound_window_expression.hpp                  |    5 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/expression_binder.hpp                                   |   30 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/expression_binder/aggregate_binder.hpp                  |    2 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/expression_binder/alter_binder.hpp                      |    2 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/expression_binder/base_select_binder.hpp                |only
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/expression_binder/check_binder.hpp                      |    2 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/expression_binder/constant_binder.hpp                   |    2 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/expression_binder/group_binder.hpp                      |    2 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/expression_binder/having_binder.hpp                     |    8 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/expression_binder/index_binder.hpp                      |   10 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/expression_binder/insert_binder.hpp                     |    2 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/expression_binder/lateral_binder.hpp                    |    4 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/expression_binder/order_binder.hpp                      |   11 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/expression_binder/qualify_binder.hpp                    |    8 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/expression_binder/relation_binder.hpp                   |    2 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/expression_binder/returning_binder.hpp                  |    2 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/expression_binder/select_binder.hpp                     |   47 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/expression_binder/table_function_binder.hpp             |    4 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/expression_binder/update_binder.hpp                     |    2 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/expression_binder/where_binder.hpp                      |    8 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/logical_operator.hpp                                    |   17 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/logical_tokens.hpp                                      |    2 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/list.hpp                                       |    2 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_aggregate.hpp                          |    6 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_any_join.hpp                           |    3 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_asof_join.hpp                          |only
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_column_data_get.hpp                    |    6 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_comparison_join.hpp                    |   10 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_copy_to_file.hpp                       |    7 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_create.hpp                             |    8 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_create_index.hpp                       |    3 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_create_table.hpp                       |    7 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_cross_product.hpp                      |    3 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_cteref.hpp                             |    4 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_delete.hpp                             |    8 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_delim_get.hpp                          |    4 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_delim_join.hpp                         |    3 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_distinct.hpp                           |   19 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_dummy_scan.hpp                         |    4 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_empty_result.hpp                       |    3 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_execute.hpp                            |    3 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_explain.hpp                            |    3 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_export.hpp                             |    3 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_expression_get.hpp                     |    4 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_extension_operator.hpp                 |    4 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_filter.hpp                             |    3 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_get.hpp                                |    5 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_insert.hpp                             |    8 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_join.hpp                               |    3 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_limit.hpp                              |    3 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_limit_percent.hpp                      |    3 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_order.hpp                              |    3 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_pivot.hpp                              |only
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_positional_join.hpp                    |    3 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_pragma.hpp                             |    3 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_prepare.hpp                            |    3 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_projection.hpp                         |    4 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_recursive_cte.hpp                      |   15 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_reset.hpp                              |    3 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_sample.hpp                             |    3 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_set.hpp                                |    3 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_set_operation.hpp                      |    4 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_show.hpp                               |    3 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_simple.hpp                             |    3 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_top_n.hpp                              |    3 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_unconditional_join.hpp                 |    3 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_unnest.hpp                             |    4 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_update.hpp                             |    8 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_window.hpp                             |    4 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/operator_extension.hpp                                  |    8 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/parsed_data/bound_create_function_info.hpp              |    5 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/parsed_data/bound_create_table_info.hpp                 |    5 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/pragma_handler.hpp                                      |    5 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/query_node/bound_recursive_cte_node.hpp                 |    3 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/query_node/bound_select_node.hpp                        |   15 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/query_node/bound_set_operation_node.hpp                 |    3 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/query_node/list.hpp                                     |only
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/table_binding.hpp                                       |   11 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/tableref/bound_basetableref.hpp                         |    7 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/tableref/bound_cteref.hpp                               |    3 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/tableref/bound_dummytableref.hpp                        |    3 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/tableref/bound_expressionlistref.hpp                    |    3 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/tableref/bound_joinref.hpp                              |    3 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/tableref/bound_pivotref.hpp                             |only
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/tableref/bound_pos_join_ref.hpp                         |    3 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/tableref/bound_subqueryref.hpp                          |    3 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/tableref/bound_table_function.hpp                       |    3 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/tableref/list.hpp                                       |    1 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/arena_allocator.hpp                                     |   11 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/block_manager.hpp                                       |    1 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/buffer/block_handle.hpp                                 |   27 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/buffer/buffer_handle.hpp                                |   11 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/buffer/buffer_pool.hpp                                  |only
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/buffer/temporary_file_information.hpp                   |only
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/buffer_manager.hpp                                      |  198 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/checkpoint/table_data_writer.hpp                        |    5 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/checkpoint_manager.hpp                                  |    2 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/compression/chimp/algorithm/chimp128.hpp                |    1 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/compression/chimp/algorithm/chimp_utils.hpp             |   97 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/compression/chimp/chimp_analyze.hpp                     |    2 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/compression/chimp/chimp_compress.hpp                    |   16 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/compression/chimp/chimp_fetch.hpp                       |    2 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/compression/chimp/chimp_scan.hpp                        |    5 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/compression/patas/algorithm/patas.hpp                   |    1 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/compression/patas/patas_analyze.hpp                     |    2 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/compression/patas/patas_compress.hpp                    |   16 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/compression/patas/patas_fetch.hpp                       |    2 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/compression/patas/patas_scan.hpp                        |    5 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/data_pointer.hpp                                        |    7 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/data_table.hpp                                          |   17 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/in_memory_block_manager.hpp                             |    3 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/index.hpp                                               |   67 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/meta_block_reader.hpp                                   |    7 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/optimistic_data_writer.hpp                              |only
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/partial_block_manager.hpp                               |   30 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/single_file_block_manager.hpp                           |   16 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/standard_buffer_manager.hpp                             |only
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/statistics/base_statistics.hpp                          |  122 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/statistics/column_statistics.hpp                        |   25 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/statistics/distinct_statistics.hpp                      |   14 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/statistics/list_stats.hpp                               |only
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/statistics/node_statistics.hpp                          |   26 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/statistics/numeric_stats.hpp                            |only
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/statistics/numeric_stats_union.hpp                      |only
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/statistics/segment_statistics.hpp                       |    9 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/statistics/string_stats.hpp                             |only
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/statistics/struct_stats.hpp                             |only
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/storage_extension.hpp                                   |    4 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/storage_manager.hpp                                     |    2 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/string_uncompressed.hpp                                 |    9 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/table/append_state.hpp                                  |    2 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/table/column_checkpoint_state.hpp                       |   50 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/table/column_data.hpp                                   |   45 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/table/column_data_checkpointer.hpp                      |    8 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/table/column_segment.hpp                                |   16 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/table/column_segment_tree.hpp                           |only
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/table/list_column_data.hpp                              |    6 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/table/persistent_table_data.hpp                         |    9 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/table/row_group.hpp                                     |   88 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/table/row_group_collection.hpp                          |   33 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/table/row_group_segment_tree.hpp                        |only
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/table/scan_state.hpp                                    |   60 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/table/segment_base.hpp                                  |   14 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/table/segment_tree.hpp                                  |  333 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/table/standard_column_data.hpp                          |   10 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/table/struct_column_data.hpp                            |    4 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/table/table_index_list.hpp                              |    2 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/table/table_statistics.hpp                              |    5 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/table/update_segment.hpp                                |   15 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/table/validity_column_data.hpp                          |    3 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/table_storage_info.hpp                                  |    2 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/write_ahead_log.hpp                                     |   42 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/transaction/cleanup_state.hpp                                   |   11 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/transaction/commit_state.hpp                                    |   12 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/transaction/duck_transaction.hpp                                |    6 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/transaction/local_storage.hpp                                   |  109 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/transaction/meta_transaction.hpp                                |   11 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/transaction/transaction.hpp                                     |   12 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/transaction/transaction_data.hpp                                |    3 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/transaction/undo_buffer.hpp                                     |    2 
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/verification/deserialized_statement_verifier_v2.hpp             |only
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/verification/no_operator_caching_verifier.hpp                   |only
 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/verification/statement_verifier.hpp                             |    6 
 duckdb-0.8.0/duckdb/src/duckdb/src/main/appender.cpp                                                              |   18 
 duckdb-0.8.0/duckdb/src/duckdb/src/main/attached_database.cpp                                                     |   39 
 duckdb-0.8.0/duckdb/src/duckdb/src/main/capi/appender-c.cpp                                                       |    2 
 duckdb-0.8.0/duckdb/src/duckdb/src/main/capi/cast/from_decimal-c.cpp                                              |    2 
 duckdb-0.8.0/duckdb/src/duckdb/src/main/capi/duckdb-c.cpp                                                         |    2 
 duckdb-0.8.0/duckdb/src/duckdb/src/main/capi/helper-c.cpp                                                         |    7 
 duckdb-0.8.0/duckdb/src/duckdb/src/main/capi/pending-c.cpp                                                        |   25 
 duckdb-0.8.0/duckdb/src/duckdb/src/main/capi/replacement_scan-c.cpp                                               |    8 
 duckdb-0.8.0/duckdb/src/duckdb/src/main/capi/result-c.cpp                                                         |   34 
 duckdb-0.8.0/duckdb/src/duckdb/src/main/capi/stream-c.cpp                                                         |only
 duckdb-0.8.0/duckdb/src/duckdb/src/main/capi/table_function-c.cpp                                                 |   82 
 duckdb-0.8.0/duckdb/src/duckdb/src/main/capi/threading-c.cpp                                                      |    2 
 duckdb-0.8.0/duckdb/src/duckdb/src/main/client_context.cpp                                                        |  211 
 duckdb-0.8.0/duckdb/src/duckdb/src/main/client_data.cpp                                                           |   40 
 duckdb-0.8.0/duckdb/src/duckdb/src/main/client_verify.cpp                                                         |    9 
 duckdb-0.8.0/duckdb/src/duckdb/src/main/config.cpp                                                                |  104 
 duckdb-0.8.0/duckdb/src/duckdb/src/main/connection.cpp                                                            |    6 
 duckdb-0.8.0/duckdb/src/duckdb/src/main/database.cpp                                                              |  178 
 duckdb-0.8.0/duckdb/src/duckdb/src/main/database_manager.cpp                                                      |   33 
 duckdb-0.8.0/duckdb/src/duckdb/src/main/database_path_and_type.cpp                                                |only
 duckdb-0.8.0/duckdb/src/duckdb/src/main/db_instance_cache.cpp                                                     |    8 
 duckdb-0.8.0/duckdb/src/duckdb/src/main/extension/extension_helper.cpp                                            |   22 
 duckdb-0.8.0/duckdb/src/duckdb/src/main/extension/extension_install.cpp                                           |   71 
 duckdb-0.8.0/duckdb/src/duckdb/src/main/extension/extension_load.cpp                                              |  169 
 duckdb-0.8.0/duckdb/src/duckdb/src/main/extension/extension_util.cpp                                              |only
 duckdb-0.8.0/duckdb/src/duckdb/src/main/materialized_query_result.cpp                                             |    4 
 duckdb-0.8.0/duckdb/src/duckdb/src/main/pending_query_result.cpp                                                  |    2 
 duckdb-0.8.0/duckdb/src/duckdb/src/main/prepared_statement.cpp                                                    |    6 
 duckdb-0.8.0/duckdb/src/duckdb/src/main/query_profiler.cpp                                                        |   92 
 duckdb-0.8.0/duckdb/src/duckdb/src/main/query_result.cpp                                                          |   15 
 duckdb-0.8.0/duckdb/src/duckdb/src/main/relation.cpp                                                              |   15 
 duckdb-0.8.0/duckdb/src/duckdb/src/main/relation/aggregate_relation.cpp                                           |    4 
 duckdb-0.8.0/duckdb/src/duckdb/src/main/relation/create_table_relation.cpp                                        |    4 
 duckdb-0.8.0/duckdb/src/duckdb/src/main/relation/create_view_relation.cpp                                         |    4 
 duckdb-0.8.0/duckdb/src/duckdb/src/main/relation/cross_product_relation.cpp                                       |    6 
 duckdb-0.8.0/duckdb/src/duckdb/src/main/relation/delete_relation.cpp                                              |    2 
 duckdb-0.8.0/duckdb/src/duckdb/src/main/relation/explain_relation.cpp                                             |    8 
 duckdb-0.8.0/duckdb/src/duckdb/src/main/relation/filter_relation.cpp                                              |    8 
 duckdb-0.8.0/duckdb/src/duckdb/src/main/relation/insert_relation.cpp                                              |    2 
 duckdb-0.8.0/duckdb/src/duckdb/src/main/relation/join_relation.cpp                                                |    9 
 duckdb-0.8.0/duckdb/src/duckdb/src/main/relation/limit_relation.cpp                                               |    6 
 duckdb-0.8.0/duckdb/src/duckdb/src/main/relation/order_relation.cpp                                               |    6 
 duckdb-0.8.0/duckdb/src/duckdb/src/main/relation/projection_relation.cpp                                          |    4 
 duckdb-0.8.0/duckdb/src/duckdb/src/main/relation/query_relation.cpp                                               |    2 
 duckdb-0.8.0/duckdb/src/duckdb/src/main/relation/read_csv_relation.cpp                                            |    6 
 duckdb-0.8.0/duckdb/src/duckdb/src/main/relation/setop_relation.cpp                                               |    9 
 duckdb-0.8.0/duckdb/src/duckdb/src/main/relation/table_function_relation.cpp                                      |   22 
 duckdb-0.8.0/duckdb/src/duckdb/src/main/relation/table_relation.cpp                                               |    6 
 duckdb-0.8.0/duckdb/src/duckdb/src/main/relation/update_relation.cpp                                              |    4 
 duckdb-0.8.0/duckdb/src/duckdb/src/main/relation/value_relation.cpp                                               |    8 
 duckdb-0.8.0/duckdb/src/duckdb/src/main/relation/view_relation.cpp                                                |    6 
 duckdb-0.8.0/duckdb/src/duckdb/src/main/relation/write_csv_relation.cpp                                           |    2 
 duckdb-0.8.0/duckdb/src/duckdb/src/main/relation/write_parquet_relation.cpp                                       |    2 
 duckdb-0.8.0/duckdb/src/duckdb/src/main/settings/settings.cpp                                                     |  131 
 duckdb-0.8.0/duckdb/src/duckdb/src/main/stream_query_result.cpp                                                   |   10 
 duckdb-0.8.0/duckdb/src/duckdb/src/optimizer/column_lifetime_analyzer.cpp                                         |    7 
 duckdb-0.8.0/duckdb/src/duckdb/src/optimizer/common_aggregate_optimizer.cpp                                       |    6 
 duckdb-0.8.0/duckdb/src/duckdb/src/optimizer/cse_optimizer.cpp                                                    |   31 
 duckdb-0.8.0/duckdb/src/duckdb/src/optimizer/deliminator.cpp                                                      |   55 
 duckdb-0.8.0/duckdb/src/duckdb/src/optimizer/expression_heuristics.cpp                                            |   22 
 duckdb-0.8.0/duckdb/src/duckdb/src/optimizer/expression_rewriter.cpp                                              |   20 
 duckdb-0.8.0/duckdb/src/duckdb/src/optimizer/filter_combiner.cpp                                                  |  277 
 duckdb-0.8.0/duckdb/src/duckdb/src/optimizer/filter_pullup.cpp                                                    |   10 
 duckdb-0.8.0/duckdb/src/duckdb/src/optimizer/filter_pushdown.cpp                                                  |   28 
 duckdb-0.8.0/duckdb/src/duckdb/src/optimizer/in_clause_rewriter.cpp                                               |   24 
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 duckdb-0.8.0/duckdb/src/duckdb/src/optimizer/join_order/join_node.cpp                                             |   19 
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 duckdb-0.8.0/duckdb/src/duckdb/src/optimizer/join_order/join_relation_set.cpp                                     |   66 
 duckdb-0.8.0/duckdb/src/duckdb/src/optimizer/join_order/query_graph.cpp                                           |   75 
 duckdb-0.8.0/duckdb/src/duckdb/src/optimizer/matcher/expression_matcher.cpp                                       |   54 
 duckdb-0.8.0/duckdb/src/duckdb/src/optimizer/optimizer.cpp                                                        |   29 
 duckdb-0.8.0/duckdb/src/duckdb/src/optimizer/pullup/pullup_filter.cpp                                             |    2 
 duckdb-0.8.0/duckdb/src/duckdb/src/optimizer/pullup/pullup_from_left.cpp                                          |    4 
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 duckdb-0.8.0/duckdb/src/duckdb/src/optimizer/regex_range_filter.cpp                                               |   18 
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 duckdb-0.8.0/duckdb/src/duckdb/src/optimizer/rule/constant_folding.cpp                                            |   18 
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 duckdb-0.8.0/duckdb/src/duckdb/src/optimizer/topn_optimizer.cpp                                                   |    6 
 duckdb-0.8.0/duckdb/src/duckdb/src/optimizer/unnest_rewriter.cpp                                                  |   52 
 duckdb-0.8.0/duckdb/src/duckdb/src/parallel/event.cpp                                                             |    2 
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 duckdb-0.8.0/duckdb/src/duckdb/src/parallel/meta_pipeline.cpp                                                     |   23 
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 duckdb-0.8.0/duckdb/src/duckdb/src/parser/base_expression.cpp                                                     |    6 
 duckdb-0.8.0/duckdb/src/duckdb/src/parser/column_definition.cpp                                                   |   12 
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 duckdb-0.8.0/duckdb/src/duckdb/src/parser/expression/between_expression.cpp                                       |   21 
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 duckdb-0.8.0/duckdb/src/duckdb/src/parser/expression/cast_expression.cpp                                          |   21 
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 duckdb-0.8.0/duckdb/src/duckdb/src/parser/expression/comparison_expression.cpp                                    |   20 
 duckdb-0.8.0/duckdb/src/duckdb/src/parser/expression/conjunction_expression.cpp                                   |   23 
 duckdb-0.8.0/duckdb/src/duckdb/src/parser/expression/constant_expression.cpp                                      |   20 
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 duckdb-0.8.0/duckdb/src/duckdb/src/parser/expression/lambda_expression.cpp                                        |   20 
 duckdb-0.8.0/duckdb/src/duckdb/src/parser/expression/operator_expression.cpp                                      |   19 
 duckdb-0.8.0/duckdb/src/duckdb/src/parser/expression/parameter_expression.cpp                                     |   19 
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 duckdb-0.8.0/duckdb/src/duckdb/src/parser/expression/star_expression.cpp                                          |   38 
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 duckdb-0.8.0/duckdb/src/duckdb/src/parser/expression_util.cpp                                                     |   12 
 duckdb-0.8.0/duckdb/src/duckdb/src/parser/keyword_helper.cpp                                                      |   12 
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 duckdb-0.8.0/duckdb/src/duckdb/src/parser/parser.cpp                                                              |   24 
 duckdb-0.8.0/duckdb/src/duckdb/src/parser/query_node.cpp                                                          |   60 
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 duckdb-0.8.0/duckdb/src/duckdb/src/parser/result_modifier.cpp                                                     |  105 
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 duckdb-0.8.0/duckdb/src/duckdb/src/parser/statement/vacuum_statement.cpp                                          |    2 
 duckdb-0.8.0/duckdb/src/duckdb/src/parser/tableref.cpp                                                            |   53 
 duckdb-0.8.0/duckdb/src/duckdb/src/parser/tableref/basetableref.cpp                                               |   25 
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 duckdb-0.8.0/duckdb/src/duckdb/src/parser/tableref/expressionlistref.cpp                                          |   21 
 duckdb-0.8.0/duckdb/src/duckdb/src/parser/tableref/joinref.cpp                                                    |   37 
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 duckdb-0.8.0/duckdb/src/duckdb/src/parser/transform/statement/transform_import.cpp                                |    2 
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 duckdb-0.8.0/duckdb/src/duckdb/src/parser/transform/statement/transform_load.cpp                                  |    4 
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 duckdb-0.8.0/duckdb/src/duckdb/src/parser/transform/statement/transform_prepare.cpp                               |    6 
 duckdb-0.8.0/duckdb/src/duckdb/src/parser/transform/statement/transform_rename.cpp                                |   17 
 duckdb-0.8.0/duckdb/src/duckdb/src/parser/transform/statement/transform_select.cpp                                |   10 
 duckdb-0.8.0/duckdb/src/duckdb/src/parser/transform/statement/transform_select_node.cpp                           |  113 
 duckdb-0.8.0/duckdb/src/duckdb/src/parser/transform/statement/transform_set.cpp                                   |    4 
 duckdb-0.8.0/duckdb/src/duckdb/src/parser/transform/statement/transform_show.cpp                                  |   10 
 duckdb-0.8.0/duckdb/src/duckdb/src/parser/transform/statement/transform_show_select.cpp                           |    2 
 duckdb-0.8.0/duckdb/src/duckdb/src/parser/transform/statement/transform_transaction.cpp                           |    6 
 duckdb-0.8.0/duckdb/src/duckdb/src/parser/transform/statement/transform_update.cpp                                |    4 
 duckdb-0.8.0/duckdb/src/duckdb/src/parser/transform/statement/transform_upsert.cpp                                |    6 
 duckdb-0.8.0/duckdb/src/duckdb/src/parser/transform/statement/transform_use.cpp                                   |    2 
 duckdb-0.8.0/duckdb/src/duckdb/src/parser/transform/statement/transform_vacuum.cpp                                |    2 
 duckdb-0.8.0/duckdb/src/duckdb/src/parser/transform/tableref/transform_base_tableref.cpp                          |    2 
 duckdb-0.8.0/duckdb/src/duckdb/src/parser/transform/tableref/transform_from.cpp                                   |    6 
 duckdb-0.8.0/duckdb/src/duckdb/src/parser/transform/tableref/transform_join.cpp                                   |   15 
 duckdb-0.8.0/duckdb/src/duckdb/src/parser/transform/tableref/transform_pivot.cpp                                  |only
 duckdb-0.8.0/duckdb/src/duckdb/src/parser/transform/tableref/transform_subquery.cpp                               |    4 
 duckdb-0.8.0/duckdb/src/duckdb/src/parser/transform/tableref/transform_table_function.cpp                         |    2 
 duckdb-0.8.0/duckdb/src/duckdb/src/parser/transform/tableref/transform_tableref.cpp                               |    2 
 duckdb-0.8.0/duckdb/src/duckdb/src/parser/transformer.cpp                                                         |   84 
 duckdb-0.8.0/duckdb/src/duckdb/src/planner/bind_context.cpp                                                       |  192 
 duckdb-0.8.0/duckdb/src/duckdb/src/planner/binder.cpp                                                             |  186 
 duckdb-0.8.0/duckdb/src/duckdb/src/planner/binder/expression/bind_aggregate_expression.cpp                        |   89 
 duckdb-0.8.0/duckdb/src/duckdb/src/planner/binder/expression/bind_between_expression.cpp                          |   42 
 duckdb-0.8.0/duckdb/src/duckdb/src/planner/binder/expression/bind_case_expression.cpp                             |   20 
 duckdb-0.8.0/duckdb/src/duckdb/src/planner/binder/expression/bind_cast_expression.cpp                             |   14 
 duckdb-0.8.0/duckdb/src/duckdb/src/planner/binder/expression/bind_collate_expression.cpp                          |   14 
 duckdb-0.8.0/duckdb/src/duckdb/src/planner/binder/expression/bind_columnref_expression.cpp                        |   86 
 duckdb-0.8.0/duckdb/src/duckdb/src/planner/binder/expression/bind_comparison_expression.cpp                       |   44 
 duckdb-0.8.0/duckdb/src/duckdb/src/planner/binder/expression/bind_conjunction_expression.cpp                      |    7 
 duckdb-0.8.0/duckdb/src/duckdb/src/planner/binder/expression/bind_constant_expression.cpp                         |    2 
 duckdb-0.8.0/duckdb/src/duckdb/src/planner/binder/expression/bind_function_expression.cpp                         |  113 
 duckdb-0.8.0/duckdb/src/duckdb/src/planner/binder/expression/bind_lambda.cpp                                      |   27 
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 duckdb-0.8.0/duckdb/src/duckdb/src/planner/binder/query_node/bind_recursive_cte_node.cpp                          |    2 
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 duckdb-0.8.0/duckdb/src/duckdb/src/planner/binder/query_node/bind_table_macro_node.cpp                            |   10 
 duckdb-0.8.0/duckdb/src/duckdb/src/planner/binder/query_node/plan_query_node.cpp                                  |   23 
 duckdb-0.8.0/duckdb/src/duckdb/src/planner/binder/query_node/plan_recursive_cte_node.cpp                          |    9 
 duckdb-0.8.0/duckdb/src/duckdb/src/planner/binder/query_node/plan_select_node.cpp                                 |   53 
 duckdb-0.8.0/duckdb/src/duckdb/src/planner/binder/query_node/plan_setop.cpp                                       |   13 
 duckdb-0.8.0/duckdb/src/duckdb/src/planner/binder/query_node/plan_subquery.cpp                                    |   70 
 duckdb-0.8.0/duckdb/src/duckdb/src/planner/binder/statement/bind_attach.cpp                                       |    2 
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 duckdb-0.8.0/duckdb/src/duckdb/src/planner/binder/statement/bind_set.cpp                                          |    8 
 duckdb-0.8.0/duckdb/src/duckdb/src/planner/binder/statement/bind_show.cpp                                         |    2 
 duckdb-0.8.0/duckdb/src/duckdb/src/planner/binder/statement/bind_simple.cpp                                       |   13 
 duckdb-0.8.0/duckdb/src/duckdb/src/planner/binder/statement/bind_summarize.cpp                                    |   56 
 duckdb-0.8.0/duckdb/src/duckdb/src/planner/binder/statement/bind_update.cpp                                       |   56 
 duckdb-0.8.0/duckdb/src/duckdb/src/planner/binder/statement/bind_vacuum.cpp                                       |   19 
 duckdb-0.8.0/duckdb/src/duckdb/src/planner/binder/tableref/bind_basetableref.cpp                                  |   85 
 duckdb-0.8.0/duckdb/src/duckdb/src/planner/binder/tableref/bind_emptytableref.cpp                                 |    2 
 duckdb-0.8.0/duckdb/src/duckdb/src/planner/binder/tableref/bind_expressionlistref.cpp                             |    2 
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 duckdb-0.8.0/duckdb/src/duckdb/src/planner/binder/tableref/plan_cteref.cpp                                        |    3 
 duckdb-0.8.0/duckdb/src/duckdb/src/planner/binder/tableref/plan_dummytableref.cpp                                 |    2 
 duckdb-0.8.0/duckdb/src/duckdb/src/planner/binder/tableref/plan_expressionlistref.cpp                             |    6 
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 duckdb-0.8.0/duckdb/src/duckdb/src/planner/bound_result_modifier.cpp                                              |   28 
 duckdb-0.8.0/duckdb/src/duckdb/src/planner/expression.cpp                                                         |    3 
 duckdb-0.8.0/duckdb/src/duckdb/src/planner/expression/bound_aggregate_expression.cpp                              |   33 
 duckdb-0.8.0/duckdb/src/duckdb/src/planner/expression/bound_between_expression.cpp                                |   18 
 duckdb-0.8.0/duckdb/src/duckdb/src/planner/expression/bound_case_expression.cpp                                   |    6 
 duckdb-0.8.0/duckdb/src/duckdb/src/planner/expression/bound_cast_expression.cpp                                   |   17 
 duckdb-0.8.0/duckdb/src/duckdb/src/planner/expression/bound_columnref_expression.cpp                              |   28 
 duckdb-0.8.0/duckdb/src/duckdb/src/planner/expression/bound_comparison_expression.cpp                             |   11 
 duckdb-0.8.0/duckdb/src/duckdb/src/planner/expression/bound_conjunction_expression.cpp                            |    8 
 duckdb-0.8.0/duckdb/src/duckdb/src/planner/expression/bound_constant_expression.cpp                               |    8 
 duckdb-0.8.0/duckdb/src/duckdb/src/planner/expression/bound_expression.cpp                                        |   17 
 duckdb-0.8.0/duckdb/src/duckdb/src/planner/expression/bound_function_expression.cpp                               |   16 
 duckdb-0.8.0/duckdb/src/duckdb/src/planner/expression/bound_lambda_expression.cpp                                 |   10 
 duckdb-0.8.0/duckdb/src/duckdb/src/planner/expression/bound_lambdaref_expression.cpp                              |   10 
 duckdb-0.8.0/duckdb/src/duckdb/src/planner/expression/bound_operator_expression.cpp                               |    8 
 duckdb-0.8.0/duckdb/src/duckdb/src/planner/expression/bound_parameter_expression.cpp                              |   10 
 duckdb-0.8.0/duckdb/src/duckdb/src/planner/expression/bound_reference_expression.cpp                              |   18 
 duckdb-0.8.0/duckdb/src/duckdb/src/planner/expression/bound_unnest_expression.cpp                                 |    8 
 duckdb-0.8.0/duckdb/src/duckdb/src/planner/expression/bound_window_expression.cpp                                 |   43 
 duckdb-0.8.0/duckdb/src/duckdb/src/planner/expression_binder.cpp                                                  |  101 
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 duckdb-0.8.0/duckdb/src/duckdb/src/planner/expression_iterator.cpp                                                |   61 
 duckdb-0.8.0/duckdb/src/duckdb/src/planner/filter/conjunction_filter.cpp                                          |    4 
 duckdb-0.8.0/duckdb/src/duckdb/src/planner/filter/constant_filter.cpp                                             |   12 
 duckdb-0.8.0/duckdb/src/duckdb/src/planner/filter/null_filter.cpp                                                 |    4 
 duckdb-0.8.0/duckdb/src/duckdb/src/planner/joinside.cpp                                                           |   10 
 duckdb-0.8.0/duckdb/src/duckdb/src/planner/logical_operator.cpp                                                   |   15 
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 duckdb-0.8.0/duckdb/src/duckdb/src/planner/operator/logical_create.cpp                                            |    4 
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 duckdb-0.8.0/duckdb/src/duckdb/src/planner/operator/logical_cteref.cpp                                            |   13 
 duckdb-0.8.0/duckdb/src/duckdb/src/planner/operator/logical_delete.cpp                                            |   28 
 duckdb-0.8.0/duckdb/src/duckdb/src/planner/operator/logical_delim_get.cpp                                         |   15 
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 duckdb-0.8.0/duckdb/src/duckdb/src/planner/operator/logical_filter.cpp                                            |    4 
 duckdb-0.8.0/duckdb/src/duckdb/src/planner/operator/logical_get.cpp                                               |   18 
 duckdb-0.8.0/duckdb/src/duckdb/src/planner/operator/logical_insert.cpp                                            |   63 
 duckdb-0.8.0/duckdb/src/duckdb/src/planner/operator/logical_join.cpp                                              |    2 
 duckdb-0.8.0/duckdb/src/duckdb/src/planner/operator/logical_limit.cpp                                             |    2 
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 duckdb-0.8.0/duckdb/src/duckdb/src/planner/operator/logical_order.cpp                                             |    2 
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 duckdb-0.8.0/duckdb/src/duckdb/src/planner/operator/logical_reset.cpp                                             |    2 
 duckdb-0.8.0/duckdb/src/duckdb/src/planner/operator/logical_sample.cpp                                            |    2 
 duckdb-0.8.0/duckdb/src/duckdb/src/planner/operator/logical_set.cpp                                               |    2 
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 duckdb-0.8.0/duckdb/src/duckdb/src/planner/operator/logical_simple.cpp                                            |   40 
 duckdb-0.8.0/duckdb/src/duckdb/src/planner/operator/logical_top_n.cpp                                             |    2 
 duckdb-0.8.0/duckdb/src/duckdb/src/planner/operator/logical_unnest.cpp                                            |   15 
 duckdb-0.8.0/duckdb/src/duckdb/src/planner/operator/logical_update.cpp                                            |   31 
 duckdb-0.8.0/duckdb/src/duckdb/src/planner/operator/logical_window.cpp                                            |   13 
 duckdb-0.8.0/duckdb/src/duckdb/src/planner/parsed_data/bound_create_table_info.cpp                                |   44 
 duckdb-0.8.0/duckdb/src/duckdb/src/planner/planner.cpp                                                            |   20 
 duckdb-0.8.0/duckdb/src/duckdb/src/planner/pragma_handler.cpp                                                     |   33 
 duckdb-0.8.0/duckdb/src/duckdb/src/planner/subquery/flatten_dependent_join.cpp                                    |  124 
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 duckdb-0.8.0/duckdb/src/duckdb/src/planner/table_binding.cpp                                                      |   35 
 duckdb-0.8.0/duckdb/src/duckdb/src/planner/table_filter.cpp                                                       |    4 
 duckdb-0.8.0/duckdb/src/duckdb/src/storage/arena_allocator.cpp                                                    |   36 
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 duckdb-0.8.0/duckdb/src/duckdb/src/storage/buffer_manager.cpp                                                     | 1114 
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 duckdb-0.8.0/duckdb/src/duckdb/src/storage/checkpoint_manager.cpp                                                 |  174 
 duckdb-0.8.0/duckdb/src/duckdb/src/storage/compression/bitpacking.cpp                                             |   69 
 duckdb-0.8.0/duckdb/src/duckdb/src/storage/compression/dictionary_compression.cpp                                 |   25 
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 duckdb-0.8.0/duckdb/src/duckdb/src/storage/compression/fsst.cpp                                                   |   32 
 duckdb-0.8.0/duckdb/src/duckdb/src/storage/compression/numeric_constant.cpp                                       |   21 
 duckdb-0.8.0/duckdb/src/duckdb/src/storage/compression/patas.cpp                                                  |    2 
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 duckdb-0.8.0/duckdb/src/duckdb/src/storage/table_index_list.cpp                                                   |    6 
 duckdb-0.8.0/duckdb/src/duckdb/src/storage/wal_replay.cpp                                                         |   75 
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 duckdb-0.8.0/duckdb/src/duckdb/src/transaction/undo_buffer.cpp                                                    |   11 
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 duckdb-0.8.0/duckdb/src/duckdb/ub_src_main_capi.cpp                                                               |    2 
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 duckdb-0.8.0/duckdb/src/duckdb/ub_src_optimizer_rule.cpp                                                          |    2 
 duckdb-0.8.0/duckdb/src/duckdb/ub_src_parallel.cpp                                                                |    2 
 duckdb-0.8.0/duckdb/src/duckdb/ub_src_parser.cpp                                                                  |    2 
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 duckdb-0.8.0/duckdb/src/duckdb/ub_src_parser_statement.cpp                                                        |    2 
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 duckdb-0.8.0/duckdb/src/register.cpp                                                                              |   65 
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 duckdb-0.8.0/duckdb/src/statement.cpp                                                                             |   16 
 duckdb-0.8.0/duckdb/src/transform.cpp                                                                             |   52 
 duckdb-0.8.0/duckdb/src/types.cpp                                                                                 |   16 
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Package ACEt updated to version 1.9.0 with previous version 1.8.2 dated 2022-09-26

Title: Estimating Dynamic Heritability and Twin Model Comparison
Description: Twin models that are able to estimate the dynamic behaviour of the variance components in the classical twin models with respect to age using B-splines and P-splines.
Author: Liang He
Maintainer: Liang He <hyx520101@gmail.com>

Diff between ACEt versions 1.8.2 dated 2022-09-26 and 1.9.0 dated 2023-05-23

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Package rdacca.hp updated to version 1.1-0 with previous version 1.0-9 dated 2023-02-09

Title: Hierarchical and Variation Partitioning for Canonical Analysis
Description: This function conducts variation partitioning and hierarchical partitioning to calculate the unique, shared (referred as to "common") and individual contributions of each predictor (or matrix) towards explained variation (R-square and adjusted R-square) on canonical analysis (RDA,CCA and db-RDA), applying the algorithm of Lai J.,Zou Y., Zhang J.,Peres-Neto P.(2022) Generalizing hierarchical and variation partitioning in multiple regression and canonical analyses using the rdacca.hp R package.Methods in Ecology and Evolution,13: 782-788 <DOI:10.1111/2041-210X.13800>.
Author: Jiangshan Lai,Yao Liu,Pedro Peres-Neto,Kim Nimon
Maintainer: Jiangshan Lai <lai@njfu.edu.cn>

Diff between rdacca.hp versions 1.0-9 dated 2023-02-09 and 1.1-0 dated 2023-05-23

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Package multigraph updated to version 0.98 with previous version 0.97-2 dated 2022-07-07

Title: Plot and Manipulate Multigraphs
Description: Functions to plot and manipulate multigraphs, signed and valued graphs, bipartite graphs, multilevel graphs, and Cayley graphs with various layout options.
Author: Antonio Rivero Ostoic [aut, cre]
Maintainer: Antonio Rivero Ostoic <multiplex@post.com>

Diff between multigraph versions 0.97-2 dated 2022-07-07 and 0.98 dated 2023-05-23

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Package finbif updated to version 0.9.0 with previous version 0.8.0 dated 2023-03-29

Title: Interface for the 'Finnish Biodiversity Information Facility' API
Description: A programmatic interface to the 'Finnish Biodiversity Information Facility' ('FinBIF') API (<https://api.laji.fi>). 'FinBIF' aggregates Finnish biodiversity data from multiple sources in a single open access portal for researchers, citizen scientists, industry and government. 'FinBIF' allows users of biodiversity information to find, access, combine and visualise data on Finnish plants, animals and microorganisms. The 'finbif' package makes the publicly available data in 'FinBIF' easily accessible to programmers. Biodiversity information is available on taxonomy and taxon occurrence. Occurrence data can be filtered by taxon, time, location and other variables. The data accessed are conveniently preformatted for subsequent analyses.
Author: Finnish Museum of Natural History - Luomus [cph], William K. Morris [aut, cre]
Maintainer: William K. Morris <willi@mmorris.email>

Diff between finbif versions 0.8.0 dated 2023-03-29 and 0.9.0 dated 2023-05-23

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Package pspatreg updated to version 1.1.0 with previous version 1.0.9 dated 2023-04-14

Title: Spatial and Spatio-Temporal Semiparametric Regression Models with Spatial Lags
Description: Estimation and inference of spatial and spatio-temporal semiparametric models including spatial or spatio-temporal non-parametric trends, parametric and non-parametric covariates and, possibly, a spatial lag for the dependent variable and temporal correlation in the noise. The spatio-temporal trend can be decomposed in ANOVA way including main and interaction functional terms. Use of SAP algorithm to estimate the spatial or spatio-temporal trend and non-parametric covariates. The methodology of these models can be found in next references Basile, R. et al. (2014), <doi:10.1016/j.jedc.2014.06.011>; Rodriguez-Alvarez, M.X. et al. (2015) <doi:10.1007/s11222-014-9464-2> and, particularly referred to the focus of the package, Minguez, R., Basile, R. and Durban, M. (2020) <doi:10.1007/s10260-019-00492-8>.
Author: Roman Minguez [aut, cre] , Roberto Basile [aut] , Maria Durban [aut] , Gonzalo Espana-Heredia [aut]
Maintainer: Roman Minguez <roman.minguez@uclm.es>

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Package csmaps updated to version 2023.5.22 with previous version 2022.12.15 dated 2022-12-14

Title: Preformatted Maps of Norway that Don't Need Geolibraries
Description: Provides datasets containing preformatted maps of Norway at the county, municipality, and ward (Oslo only) level for redistricting in 2024, 2020, 2018, and 2017. Multiple layouts are provided (normal, split, and with an insert for Oslo), allowing the user to rapidly create choropleth maps of Norway without any geolibraries.
Author: Richard Aubrey White [aut, cre] , Chi Zhang [aut] , Geonorge [ctb], CSIDS [cph]
Maintainer: Richard Aubrey White <hello@rwhite.no>

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Package WeightIt updated to version 0.14.2 with previous version 0.14.1 dated 2023-05-09

Title: Weighting for Covariate Balance in Observational Studies
Description: Generates balancing weights for causal effect estimation in observational studies with binary, multi-category, or continuous point or longitudinal treatments by easing and extending the functionality of several R packages and providing in-house estimation methods. Available methods include propensity score weighting using generalized linear models, gradient boosting machines, the covariate balancing propensity score algorithm, Bayesian additive regression trees, and SuperLearner, and directly estimating balancing weights using entropy balancing, energy balancing, and optimization-based weights. Also allows for assessment of weights and checking of covariate balance by interfacing directly with the 'cobalt' package. See the vignette "Installing Supporting Packages" for instructions on how to install any package 'WeightIt' uses, including those that may not be on CRAN.
Author: Noah Greifer [aut, cre]
Maintainer: Noah Greifer <noah.greifer@gmail.com>

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Package targets updated to version 1.1.2 with previous version 1.0.0 dated 2023-04-24

Title: Dynamic Function-Oriented 'Make'-Like Declarative Pipelines
Description: Pipeline tools coordinate the pieces of computationally demanding analysis projects. The 'targets' package is a 'Make'-like pipeline tool for statistics and data science in R. The package skips costly runtime for tasks that are already up to date, orchestrates the necessary computation with implicit parallel computing, and abstracts files as R objects. If all the current output matches the current upstream code and data, then the whole pipeline is up to date, and the results are more trustworthy than otherwise. The methodology in this package borrows from GNU 'Make' (2015, ISBN:978-9881443519) and 'drake' (2018, <doi:10.21105/joss.00550>).
Author: William Michael Landau [aut, cre] , Matthew T. Warkentin [ctb], Mark Edmondson [ctb] , Samantha Oliver [rev] , Tristan Mahr [rev] , Eli Lilly and Company [cph]
Maintainer: William Michael Landau <will.landau@gmail.com>

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Package sys updated to version 3.4.2 with previous version 3.4.1 dated 2022-10-18

Title: Powerful and Reliable Tools for Running System Commands in R
Description: Drop-in replacements for the base system2() function with fine control and consistent behavior across platforms. Supports clean interruption, timeout, background tasks, and streaming STDIN / STDOUT / STDERR over binary or text connections. Arguments on Windows automatically get encoded and quoted to work on different locales.
Author: Jeroen Ooms [aut, cre] , Gabor Csardi [ctb]
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>

Diff between sys versions 3.4.1 dated 2022-10-18 and 3.4.2 dated 2023-05-23

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More information about sys at CRAN
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Package SpaDES.tools updated to version 2.0.0 with previous version 1.0.1 dated 2023-01-05

Title: Additional Tools for Developing Spatially Explicit Discrete Event Simulation (SpaDES) Models
Description: Provides GIS and map utilities, plus additional modeling tools for developing cellular automata, dynamic raster models, and agent based models in 'SpaDES'. Included are various methods for spatial spreading, spatial agents, GIS operations, random map generation, and others. See '?SpaDES.tools' for an categorized overview of these additional tools. The suggested package 'NLMR' can be installed with 'install.packages("NLMR", repos = "https://PredictiveEcology.r-universe.dev")'.
Author: Eliot J B McIntire [aut, cre] , Alex M Chubaty [aut] , Yong Luo [ctb], Steve Cumming [ctb], Jean Marchal [ctb], Her Majesty the Queen in Right of Canada, as represented by the Minister of Natural Resources Canada [cph]
Maintainer: Eliot J B McIntire <eliot.mcintire@nrcan-rncan.gc.ca>

Diff between SpaDES.tools versions 1.0.1 dated 2023-01-05 and 2.0.0 dated 2023-05-23

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More information about SpaDES.tools at CRAN
Permanent link

Package PracTools updated to version 1.4 with previous version 1.3 dated 2023-03-19

Title: Tools for Designing and Weighting Survey Samples
Description: Functions and datasets to support Valliant, Dever, and Kreuter, Practical Tools for Designing and Weighting Survey Samples (2nd edition, 2018). Contains functions for sample size calculation for survey samples using stratified or clustered one-, two-, and three-stage sample designs, and single-stage audit sample designs. Functions are included that will group geographic units accounting for distances apart and measures of size. Other functions compute variance components for multistage designs and sample sizes in two-phase designs. A number of example data sets are included.
Author: Richard Valliant, Jill A. Dever, Frauke Kreuter, George Zipf
Maintainer: Richard Valliant <valliant@umich.edu>

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More information about PracTools at CRAN
Permanent link

Package melt updated to version 1.10.0 with previous version 1.9.0 dated 2022-11-04

Title: Multiple Empirical Likelihood Tests
Description: Performs multiple empirical likelihood tests for linear and generalized linear models. The package offers an easy-to-use interface and flexibility in specifying hypotheses and calibration methods, extending the framework to simultaneous inferences. The core computational routines are implemented using the 'Eigen' C++ library and 'RcppEigen' interface, with OpenMP for parallel computation. Details of the testing procedures are given in Kim, MacEachern, and Peruggia (2023) <doi:10.1080/10485252.2023.2206919>. This work was supported by the U.S. National Science Foundation under Grants No. SES-1921523 and DMS-2015552.
Author: Eunseop Kim [aut, cre], Steven MacEachern [ctb, ths], Mario Peruggia [ctb, ths], Pierre Chausse [rev], Alex Stringer [rev]
Maintainer: Eunseop Kim <markean@pm.me>

Diff between melt versions 1.9.0 dated 2022-11-04 and 1.10.0 dated 2023-05-23

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Package isotree updated to version 0.5.20 with previous version 0.5.19-1 dated 2023-03-16

Title: Isolation-Based Outlier Detection
Description: Fast and multi-threaded implementation of isolation forest (Liu, Ting, Zhou (2008) <doi:10.1109/ICDM.2008.17>), extended isolation forest (Hariri, Kind, Brunner (2018) <arXiv:1811.02141>), SCiForest (Liu, Ting, Zhou (2010) <doi:10.1007/978-3-642-15883-4_18>), fair-cut forest (Cortes (2021) <arXiv:2110:13402>), robust random-cut forest (Guha, Mishra, Roy, Schrijvers (2016) <http://proceedings.mlr.press/v48/guha16.html>), and customizable variations of them, for isolation-based outlier detection, clustered outlier detection, distance or similarity approximation (Cortes (2019) <arXiv:1910.12362>), isolation kernel calculation (Ting, Zhu, Zhou (2018) <doi:10.1145/3219819.3219990>), and imputation of missing values (Cortes (2019) <arXiv:1911.06646>), based on random or guided decision tree splitting, and providing different metrics for scoring anomalies based on isolation depth or density (Cortes (2021) <arXiv:2111.11639>). Provides simp [...truncated...]
Author: David Cortes [aut, cre, cph], Thibaut Goetghebuer-Planchon [cph] , David Blackman [cph] , Sebastiano Vigna [cph] , NumPy Developers [cph] , SciPy Developers [cph] , Enthought Inc [cph] , Stephen Moshier [cph]
Maintainer: David Cortes <david.cortes.rivera@gmail.com>

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Package forrel updated to version 1.5.2 with previous version 1.5.1 dated 2023-04-14

Title: Forensic Pedigree Analysis and Relatedness Inference
Description: Forensic applications of pedigree analysis, including likelihood ratios for relationship testing, general relatedness inference, marker simulation, and power analysis. General computation of exclusion powers is based on Egeland et al. (2014) <doi:10.1016/j.fsigen.2013.05.001>. Several functions deal specifically with family reunion cases, implementing and developing ideas from Kling et al. (2017) <doi:10.1016/j.fsigen.2017.08.006>. A novelty of 'forrel' is the ability to model background inbreeding in forensic pedigree computations. This can have significant impact in applications, as exemplified in Vigeland and Egeland (2019) <doi:10.1016/j.fsigss.2019.10.175>. 'forrel' is part of the ped suite, a collection of packages for pedigree analysis. In particular, 'forrel' imports 'pedtools' for creating and manipulating pedigrees and markers, 'pedprobr' for likelihood computations, and 'pedmut' for mutation modelling. Pedigree data may be created from scratch, or loaded [...truncated...]
Author: Magnus Dehli Vigeland [aut, cre] , Thore Egeland [ctb]
Maintainer: Magnus Dehli Vigeland <m.d.vigeland@medisin.uio.no>

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Package PGRdup updated to version 0.2.3.8 with previous version 0.2.3.7 dated 2021-02-17

Title: Discover Probable Duplicates in Plant Genetic Resources Collections
Description: Provides functions to aid the identification of probable/possible duplicates in Plant Genetic Resources (PGR) collections using 'passport databases' comprising of information records of each constituent sample. These include methods for cleaning the data, creation of a searchable Key Word in Context (KWIC) index of keywords associated with sample records and the identification of nearly identical records with similar information by fuzzy, phonetic and semantic matching of keywords.
Author: J. Aravind [aut, cre] , J. Radhamani [aut], Kalyani Srinivasan [aut], B. Ananda Subhash [aut], Rishi Kumar Tyagi [aut], ICAR-NBGPR [cph] , Maurice Aubrey [ctb] , Kevin Atkinson [ctb] , Lawrence Philips [ctb]
Maintainer: J. Aravind <j.aravind@icar.gov.in>

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Package secr updated to version 4.6.0 with previous version 4.5.10 dated 2023-03-09

Title: Spatially Explicit Capture-Recapture
Description: Functions to estimate the density and size of a spatially distributed animal population sampled with an array of passive detectors, such as traps, or by searching polygons or transects. Models incorporating distance-dependent detection are fitted by maximizing the likelihood. Tools are included for data manipulation and model selection.
Author: Murray Efford [aut, cre] , Philipp Jund [ctb]
Maintainer: Murray Efford <murray.efford@otago.ac.nz>

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Mon, 22 May 2023

Package glmm.hp updated to version 0.1-0 with previous version 0.0-9 dated 2023-04-12

Title: Hierarchical Partitioning of Marginal R2 for Generalized Mixed-Effect Models
Description: Conducts hierarchical partitioning to calculate individual contributions of each predictor (fixed effects) towards marginal R2 for generalized linear mixed-effect model (including lm, glm and glmm) based on output of r.squaredGLMM() in 'MuMIn', applying the algorithm of Lai J.,Zou Y., Zhang S.,Zhang X.,Mao L.(2022)glmm.hp: an R package for computing individual effect of predictors in generalized linear mixed models.Journal of Plant Ecology,15(6)1302-1307<doi:10.1093/jpe/rtac096>.
Author: Jiangshan Lai [aut, cre] , Kim Nimon [aut]
Maintainer: Jiangshan Lai <lai@njfu.edu.cn>

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Package WienR updated to version 0.3-10 with previous version 0.3-9 dated 2023-04-23

Title: Derivatives of the First-Passage Time Density and Cumulative Distribution Function, and Random Sampling from the (Truncated) First-Passage Time Distribution
Description: First, we provide functions to calculate the partial derivative of the first-passage time diffusion probability density function (PDF) and cumulative distribution function (CDF) with respect to the first-passage time t (only for PDF), the upper barrier a, the drift rate v, the relative starting point w, the non-decision time t0, the inter-trial variability of the drift rate sv, the inter-trial variability of the rel. starting point sw, and the inter-trial variability of the non-decision time st0. In addition the PDF and CDF themselves are also provided. Most calculations are done on the logarithmic scale to make it more stable. Since the PDF, CDF, and their derivatives are represented as infinite series, we give the user the option to control the approximation errors with the argument 'precision'. For the numerical integration we used the C library cubature by Johnson, S. G. (2005-2013) <https://github.com/stevengj/cubature>. Numerical integration is required whenever sv, sw, and [...truncated...]
Author: Raphael Hartmann [aut, cre], Karl C. Klauer [cph, aut, ctb, ths], Steven G. Johnson [ctb], Jean M. Linhart [ctb], Brian Gough [ctb], Gerard Jungman [ctb], Rudolf Schuerer [ctb], Przemyslaw Sliwa [ctb], Jason H. Stover [ctb]
Maintainer: Raphael Hartmann <raphael.hartmann@protonmail.com>

Diff between WienR versions 0.3-9 dated 2023-04-23 and 0.3-10 dated 2023-05-22

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Package enmSdmX updated to version 1.0.6 with previous version 1.0.4 dated 2023-04-19

Title: Species Distribution Modeling and Ecological Niche Modeling
Description: Implements species distribution modeling and ecological niche modeling, including: bias correction, spatial cross-validation, model evaluation, raster interpolation, biotic "velocity" (speed and direction of movement of a "mass" represented by a raster), interpolating across a time series of rasters, and use of spatially imprecise records. The heart of the package is a set of "training" functions which automatically optimize model complexity based number of available occurrences. These algorithms include MaxEnt, MaxNet, boosted regression trees/gradient boosting machines, generalized additive models, generalized linear models, natural splines, and random forests. To enhance interoperability with other modeling packages, no new classes are created. The package works with 'PROJ6' geodetic objects and coordinate reference systems.
Author: Adam B. Smith [cre, aut]
Maintainer: Adam B. Smith <adam.smith@mobot.org>

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Package eBsc updated to version 4.17 with previous version 4.16 dated 2023-04-26

Title: "Empirical Bayes Smoothing Splines with Correlated Errors"
Description: Presents a statistical method that uses a recursive algorithm for signal extraction. The method handles a non-parametric estimation for the correlation of the errors. See "Krivobokova", "Serra", "Rosales" and "Klockmann" (2021) <arXiv:1812.06948> for details.
Author: Francisco Rosales, Tatyana Krivobokova, Paulo Serra.
Maintainer: Francisco Rosales <francisco.rosales-marticorena@protonmail.com>

Diff between eBsc versions 4.16 dated 2023-04-26 and 4.17 dated 2023-05-22

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Package crew updated to version 0.2.1 with previous version 0.1.1 dated 2023-04-21

Title: A Distributed Worker Launcher Framework
Description: In computationally demanding analysis projects, statisticians and data scientists asynchronously deploy long-running tasks to distributed systems, ranging from traditional clusters to cloud services. The 'NNG'-powered 'mirai' R package by Gao (2023) <https://CRAN.R-project.org/package=mirai> is a sleek and sophisticated scheduler that efficiently processes these intense workloads. The 'crew' package extends 'mirai' with a unifying interface for third-party worker launchers. Inspiration also comes from packages. 'future' by Bengtsson (2021) <doi:10.32614/RJ-2021-048>, 'rrq' by FitzJohn and Ashton (2023) <https://github.com/mrc-ide/rrq>, 'clustermq' by Schubert (2019) <doi:10.1093/bioinformatics/btz284>), and 'batchtools' by Lang, Bischel, and Surmann (2017) <doi:10.21105/joss.00135>.
Author: William Michael Landau [aut, cre] , Daniel Woodie [ctb], Eli Lilly and Company [cph]
Maintainer: William Michael Landau <will.landau@gmail.com>

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Package soundgen updated to version 2.6.0 with previous version 2.5.3 dated 2022-12-11

Title: Sound Synthesis and Acoustic Analysis
Description: Performs parametric synthesis of sounds with harmonic and noise components such as animal vocalizations or human voice. Also offers tools for audio manipulation and acoustic analysis, including pitch tracking, spectral analysis, audio segmentation, pitch and formant shifting, etc. Includes four interactive web apps for synthesizing and annotating audio, manually correcting pitch contours, and measuring formant frequencies. Reference: Anikin (2019) <doi:10.3758/s13428-018-1095-7>.
Author: Andrey Anikin [aut, cre]
Maintainer: Andrey Anikin <rty.anik@rambler.ru>

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Package rsatscan updated to version 1.0.4 with previous version 1.0.3 dated 2023-04-21

Title: Tools, Classes, and Methods for Interfacing with 'SaTScan' Stand-Alone Software
Description: 'SaTScan'(TM) <https://www.satscan.org> is software for finding regions in Time, Space, or Time-Space that have excess risk, based on scan statistics, and uses Monte Carlo hypothesis testing to generate P-values for these regions. The 'rsatscan' package provides functions for writing R data frames in 'SaTScan'-readable formats, for setting 'SaTScan' parameters, for running 'SaTScan' in the OS, and for reading the files that 'SaTScan' creates.
Author: Ken Kleinman [aut], Scott Hostovich [cre], Amer Moosa [ctb]
Maintainer: Scott Hostovich <HostovichS@imsweb.com>

Diff between rsatscan versions 1.0.3 dated 2023-04-21 and 1.0.4 dated 2023-05-22

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Package Require updated to version 0.3.1 with previous version 0.3.0 dated 2023-03-14

Title: Installing and Loading R Packages for Reproducible Workflows
Description: A single key function, 'Require' that makes rerun-tolerant versions of 'install.packages' and `require` for CRAN packages, packages no longer on CRAN (i.e., archived), specific versions of packages, and GitHub packages. This approach is developed to create reproducible workflows that are flexible and fast enough to use while in development stages, while able to build snapshots once a stable package collection is found. As with other functions in a reproducible workflow, this package emphasizes functions that return the same result whether it is the first or subsequent times running the function, with subsequent times being sufficiently fast that they can be run every time without undue waiting burden on the user or developer.
Author: Eliot J B McIntire [aut, cre] , Alex M Chubaty [ctb] , Her Majesty the Queen in Right of Canada, as represented by the Minister of Natural Resources Canada [cph]
Maintainer: Eliot J B McIntire <eliot.mcintire@canada.ca>

Diff between Require versions 0.3.0 dated 2023-03-14 and 0.3.1 dated 2023-05-22

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Package matsbyname updated to version 0.6.3 with previous version 0.6.1 dated 2023-04-25

Title: An Implementation of Matrix Mathematics
Description: An implementation of matrix mathematics wherein operations are performed "by name."
Author: Matthew Heun [aut, cre]
Maintainer: Matthew Heun <matthew.heun@me.com>

Diff between matsbyname versions 0.6.1 dated 2023-04-25 and 0.6.3 dated 2023-05-22

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Package tram updated to version 0.8-3 with previous version 0.8-2 dated 2023-03-28

Title: Transformation Models
Description: Formula-based user-interfaces to specific transformation models implemented in package 'mlt'. Available models include Cox models, some parametric survival models (Weibull, etc.), models for ordered categorical variables, normal and non-normal (Box-Cox type) linear models, and continuous outcome logistic regression (Lohse et al., 2017, <DOI:10.12688/f1000research.12934.1>). The underlying theory is described in Hothorn et al. (2018) <DOI:10.1111/sjos.12291>. An extension to transformation models for clustered data is provided (Barbanti and Hothorn, 2022, <DOI:10.1093/biostatistics/kxac048>). Multivariate conditional transformation models (Klein et al, 2022, <DOI:10.1111/sjos.12501>) and shift-scale transformation models (Siegfried et al, 2023, <DOI:10.1080/00031305.2023.2203177>) can be fitted as well.
Author: Torsten Hothorn [aut, cre] , Luisa Barbanti [aut] , Sandra Siegfried [aut] , Brian Ripley [ctb], Bill Venables [ctb], Douglas M. Bates [ctb], Nadja Klein [ctb]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>

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Package ggdag updated to version 0.2.9 with previous version 0.2.8 dated 2023-03-17

Title: Analyze and Create Elegant Directed Acyclic Graphs
Description: Tidy, analyze, and plot directed acyclic graphs (DAGs). 'ggdag' is built on top of 'dagitty', an R package that uses the 'DAGitty' web tool (<http://dagitty.net>) for creating and analyzing DAGs. 'ggdag' makes it easy to tidy and plot 'dagitty' objects using 'ggplot2' and 'ggraph', as well as common analytic and graphical functions, such as determining adjustment sets and node relationships.
Author: Malcolm Barrett [aut, cre]
Maintainer: Malcolm Barrett <malcolmbarrett@gmail.com>

Diff between ggdag versions 0.2.8 dated 2023-03-17 and 0.2.9 dated 2023-05-22

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 R/adjustment_sets.R                                                                           |    5 
 R/instrumental.R                                                                              |   37 ++
 R/utils.R                                                                                     |    2 
 README.md                                                                                     |    2 
 inst/WORDLIST                                                                                 |    1 
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 man/control_for.Rd                                                                            |    6 
 man/geom_dag_text.Rd                                                                          |    2 
 man/ggdag-package.Rd                                                                          |    6 
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 tests/testthat/test-instrumental.R                                                            |   28 ++
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Package growthmodels updated to version 1.3.1 with previous version 1.2.0 dated 2013-11-23

Title: Nonlinear Growth Models
Description: A compilation of nonlinear growth models.
Author: Daniel Rodriguez
Maintainer: Daniel Rodriguez <daniel.rodriguez.perez@gmail.com>

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Package adw updated to version 0.3.1 with previous version 0.3.0 dated 2023-04-09

Title: Angular Distance Weighting Interpolation
Description: The irregularly-spaced data are interpolated onto regular latitude-longitude grids by weighting each station according to its distance and angle from the center of a search radius.
Author: Panfeng Zhang [aut, cre] , Guoyu Ren [ctb], Yun Qin [ctb], Chenchen Ren [ctb], Xiang Zheng [ctb]
Maintainer: Panfeng Zhang <zhangpanfeng@cug.edu.cn>

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Package scribe updated to version 0.2.0 with previous version 0.1.0 dated 2023-03-13

Title: Command Argument Parsing
Description: A base dependency solution with basic argument parsing for use with 'Rscript'.
Author: Jordan Mark Barbone [aut, cph, cre]
Maintainer: Jordan Mark Barbone <jmbarbone@gmail.com>

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Package oosse updated to version 1.0.5 with previous version 1.0.2 dated 2023-04-10

Title: Out-of-Sample R² with Standard Error Estimation
Description: Estimates out-of-sample R² through bootstrap or cross-validation as a measure of predictive performance. In addition, a standard error for this point estimate is provided, and confidence intervals are constructed.
Author: Stijn Hawinkel [cre, aut]
Maintainer: Stijn Hawinkel <stijn.hawinkel@psb.ugent.be>

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Package mlt updated to version 1.4-7 with previous version 1.4-6 dated 2023-04-14

Title: Most Likely Transformations
Description: Likelihood-based estimation of conditional transformation models via the most likely transformation approach described in Hothorn et al. (2018) <DOI:10.1111/sjos.12291> and Hothorn (2020) <DOI:10.18637/jss.v092.i01>.
Author: Torsten Hothorn [aut, cre]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>

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Package fuj updated to version 0.1.3 with previous version 0.1.2 dated 2023-03-06

Title: Functions and Utilities for Jordan
Description: Provides core functions and utilities for packages and other code developed by Jordan Mark Barbone.
Author: Jordan Mark Barbone [aut, cph, cre]
Maintainer: Jordan Mark Barbone <jmbarbone@gmail.com>

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Package onmaRg updated to version 0.2.1 with previous version 0.2.0 dated 2022-12-23

Title: Import Public Health Ontario's Ontario Marginalization Index
Description: The Ontario Marginalization Index is a socioeconomic model that is built on Statistics Canada census data. The model consists of four dimensions: Residential Instability, Material Deprivation, Dependency and Ethnic Concentration. Each of these dimensions are imported for a variety of geographic levels (DA, CD, etc.) for both the 2011 and 2016 administrations of the census (2021 pending). These data sets contribute to community analysis of equity with respect to Ontario's Anti-Racism Act. The Ontario Marginalization Index data is retrieved from the Public Health Ontario website: <https://www.publichealthontario.ca/en/data-and-analysis/health-equity/ontario-marginalization-index>. The shapefile data is retrieved from the Statistics Canada website: <https://www12.statcan.gc.ca/census-recensement/2011/geo/bound-limit/bound-limit-eng.cfm>.
Author: William Conley [aut, cre]
Maintainer: William Conley <william@cconley.ca>

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Package cNORM updated to version 3.0.3 with previous version 3.0.2 dated 2022-06-12

Title: Continuous Norming
Description: Conventional methods for producing standard scores or percentiles in psychometrics or biometrics are often plagued with 'jumps' or 'gaps' (i.e., discontinuities) in norm tables and low confidence for assessing extreme scores. The continuous norming method introduced by A. Lenhard et al. (2016, <doi:10.1177/1073191116656437>; 2019, <doi:10.1371/journal.pone.0222279>; 2021 <doi: 10.1177/0013164420928457>) estimates percentile development (e. g. over age) and generates continuous test norm scores on the basis of the raw data from standardization samples, without requiring assumptions about the distribution of the raw data: Norm scores are directly established from raw data by modeling the latter ones as a function of both percentile scores and an explanatory variable (e.g., age). The method minimizes bias arising from sampling and measurement error, while handling marked deviations from normality, addressing bottom or ceiling effects and capturing almost all of the varia [...truncated...]
Author: Alexandra Lenhard [aut] , Wolfgang Lenhard [cre, aut] , Sebastian Gary [aut], WPS publisher [fnd]
Maintainer: Wolfgang Lenhard <wolfgang.lenhard@uni-wuerzburg.de>

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Package vivainsights updated to version 0.3.1 with previous version 0.3.0 dated 2023-03-30

Title: Analyze and Visualize Data from 'Microsoft Viva Insights'
Description: Provides a versatile range of functions, including exploratory data analysis, time-series analysis, and data validation, whilst at the same time implements a set of best practices in analyzing and visualizing data specific to 'Microsoft Viva Insights'.
Author: Martin Chan [aut, cre], Carlos Morales [aut]
Maintainer: Martin Chan <martin.chan@microsoft.com>

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Package igraph updated to version 1.4.3 with previous version 1.4.2 dated 2023-04-07

Title: Network Analysis and Visualization
Description: Routines for simple graphs and network analysis. It can handle large graphs very well and provides functions for generating random and regular graphs, graph visualization, centrality methods and much more.
Author: Gabor Csardi [aut], Tamas Nepusz [aut] , Vincent Traag [aut], Szabolcs Horvat [aut], Fabio Zanini [aut], Daniel Noom [aut], Kirill Mueller [aut, cre], Maelle Salmon [ctb], Chan Zuckerberg Initiative [fnd]
Maintainer: Kirill Mueller <kirill@cynkra.com>

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Package abn updated to version 2.7-5 with previous version 2.7-3 dated 2023-01-25

Title: Modelling Multivariate Data with Additive Bayesian Networks
Description: Bayesian network analysis is a form of probabilistic graphical models which derives from empirical data a directed acyclic graph, DAG, describing the dependency structure between random variables. An additive Bayesian network model consists of a form of a DAG where each node comprises a generalized linear model, GLM. Additive Bayesian network models are equivalent to Bayesian multivariate regression using graphical modeling; they generalises the usual multivariable regression, GLM, to multiple dependent variables. 'abn' provides routines to help determine optimal Bayesian network models for a given data set, where these models are used to identify statistical dependencies in messy, complex data. The additive formulation of these models is equivalent to multivariate generalized linear modeling (including mixed models with iid random effects). The usual term to describe this model selection process is structure discovery. The core functionality is concerned with model selection - determi [...truncated...]
Author: Matteo Delucchi [cre] , Reinhard Furrer [aut] , Gilles Kratzer [aut] , Fraser Iain Lewis [aut] , Marta Pittavino [ctr] , Kalina Cherneva [ctr]
Maintainer: Matteo Delucchi <matteo.delucchi@math.uzh.ch>

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Package PUMP updated to version 1.0.2 with previous version 1.0.1 dated 2022-09-17

Title: Power Under Multiplicity Project
Description: Estimates power, minimum detectable effect size (MDES) and sample size requirements. The context is multilevel randomized experiments with multiple outcomes. The estimation takes into account the use of multiple testing procedures. Development of this package was supported by a grant from the Institute of Education Sciences (R305D170030). For a full package description, including a detailed technical appendix, see <arXiv:2112.15273>.
Author: Kristin Porter [aut], Luke Miratrix [aut, cre] , Kristen Hunter [aut] , Zarni Htet [aut], MDRC [cph], Institute of Education Sciences [fnd]
Maintainer: Luke Miratrix <luke_miratrix@gse.harvard.edu>

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Package spant updated to version 2.12.0 with previous version 2.11.0 dated 2023-04-22

Title: MR Spectroscopy Analysis Tools
Description: Tools for reading, visualising and processing Magnetic Resonance Spectroscopy data. The package includes methods for spectral fitting: Wilson (2021) <DOI:10.1002/mrm.28385> and spectral alignment: Wilson (2018) <DOI:10.1002/mrm.27605>.
Author: Martin Wilson [cre, aut] , Yong Wang [ctb], John Muschelli [ctb]
Maintainer: Martin Wilson <martin@pipegrep.co.uk>

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Package BiCausality updated to version 0.1.3 with previous version 0.1.2 dated 2022-08-19

Title: Binary Causality Inference Framework
Description: A framework to infer causality on binary data using techniques in frequent pattern mining and estimation statistics. Given a set of individual vectors S={x} where x(i) is a realization value of binary variable i, the framework infers empirical causal relations of binary variables i,j from S in a form of causal graph G=(V,E) where V is a set of nodes representing binary variables and there is an edge from i to j in E if the variable i causes j. The framework determines dependency among variables as well as analyzing confounding factors before deciding whether i causes j. The publication of this package is at Chainarong Amornbunchornvej, Navaporn Surasvadi, Anon Plangprasopchok, and Suttipong Thajchayapong (2023) <doi:10.1016/j.heliyon.2023.e15947>.
Author: Chainarong Amornbunchornvej [aut, cre]
Maintainer: Chainarong Amornbunchornvej <grandca@gmail.com>

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Package spaMM updated to version 4.3.0 with previous version 4.2.1 dated 2023-03-03

Title: Mixed-Effect Models, with or without Spatial Random Effects
Description: Inference based on models with or without spatially-correlated random effects, multivariate responses, or non-Gaussian random effects (e.g., Beta). Variation in residual variance (heteroscedasticity) can itself be represented by a mixed-effect model. Both classical geostatistical models (Rousset and Ferdy 2014 <doi:10.1111/ecog.00566>), and Markov random field models on irregular grids (as considered in the 'INLA' package, <https://www.r-inla.org>), can be fitted, with distinct computational procedures exploiting the sparse matrix representations for the latter case and other autoregressive models. Laplace approximations are used for likelihood or restricted likelihood. Penalized quasi-likelihood and other variants discussed in the h-likelihood literature (Lee and Nelder 2001 <doi:10.1093/biomet/88.4.987>) are also implemented.
Author: Francois Rousset [aut, cre, cph] , Jean-Baptiste Ferdy [aut, cph], Alexandre Courtiol [aut]
Maintainer: Francois Rousset <francois.rousset@umontpellier.fr>

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Package mlr3pipelines updated to version 0.5.0-1 with previous version 0.5.0 dated 2023-05-22

Title: Preprocessing Operators and Pipelines for 'mlr3'
Description: Dataflow programming toolkit that enriches 'mlr3' with a diverse set of pipelining operators ('PipeOps') that can be composed into graphs. Operations exist for data preprocessing, model fitting, and ensemble learning. Graphs can themselves be treated as 'mlr3' 'Learners' and can therefore be resampled, benchmarked, and tuned.
Author: Martin Binder [aut, cre], Florian Pfisterer [aut] , Lennart Schneider [aut] , Bernd Bischl [aut] , Michel Lang [aut] , Sebastian Fischer [ctb] , Susanne Dandl [aut]
Maintainer: Martin Binder <mlr.developer@mb706.com>

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Package lwgeom updated to version 0.2-13 with previous version 0.2-11 dated 2023-01-14

Title: Bindings to Selected 'liblwgeom' Functions for Simple Features
Description: Access to selected functions found in 'liblwgeom' <https://github.com/postgis/postgis/tree/master/liblwgeom>, the light-weight geometry library used by 'PostGIS' <http://postgis.net/>.
Author: Edzer Pebesma [aut, cre] , Colin Rundel [ctb], Andy Teucher [ctb], liblwgeom developers [cph]
Maintainer: Edzer Pebesma <edzer.pebesma@uni-muenster.de>

Diff between lwgeom versions 0.2-11 dated 2023-01-14 and 0.2-13 dated 2023-05-22

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Package csdata updated to version 2023.5.22 with previous version 2023.4.21 dated 2023-04-21

Title: Structural Data for Norway
Description: Datasets relating to population in municipalities, municipality/county matching, and how different municipalities have merged/redistricted over time from 2006 to 2020.
Author: Richard Aubrey White [aut, cre] , Chi Zhang [aut]
Maintainer: Richard Aubrey White <hello@rwhite.no>

Diff between csdata versions 2023.4.21 dated 2023-04-21 and 2023.5.22 dated 2023-05-22

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Package BrainCon updated to version 0.3.0 with previous version 0.2.0 dated 2022-04-21

Title: Inference the Partial Correlations Based on Time Series Data
Description: A statistical tool to inference the multi-level partial correlations based on multi-subject time series data, especially for brain functional connectivity. It combines both individual and population level inference by using the methods of Qiu and Zhou. (2021)<DOI: 10.1080/01621459.2021.1917417> and Genovese and Wasserman. (2006)<DOI: 10.1198/016214506000000339>. It realizes two reliable estimation methods of partial correlation coefficients, using scaled lasso and lasso. It can be used to estimate individual- or population-level partial correlations, identify nonzero ones, and find out unequal partial correlation coefficients between two populations.
Author: Yunhaonan Yang [aut, cre], Peng Wu [aut], Xin Gai [aut], Yumou Qiu [aut], Xiaohua Zhou [aut]
Maintainer: Yunhaonan Yang <haonan_yy@pku.edu.cn>

Diff between BrainCon versions 0.2.0 dated 2022-04-21 and 0.3.0 dated 2023-05-22

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Package mlr3pipelines updated to version 0.5.0 with previous version 0.4.3 dated 2023-03-23

Title: Preprocessing Operators and Pipelines for 'mlr3'
Description: Dataflow programming toolkit that enriches 'mlr3' with a diverse set of pipelining operators ('PipeOps') that can be composed into graphs. Operations exist for data preprocessing, model fitting, and ensemble learning. Graphs can themselves be treated as 'mlr3' 'Learners' and can therefore be resampled, benchmarked, and tuned.
Author: Martin Binder [aut, cre], Florian Pfisterer [aut] , Lennart Schneider [aut] , Bernd Bischl [aut] , Michel Lang [aut] , Sebastian Fischer [ctb] , Susanne Dandl [aut]
Maintainer: Martin Binder <mlr.developer@mb706.com>

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Package future.tests updated to version 0.7.0 with previous version 0.6.0 dated 2023-03-11

Title: Test Suite for 'Future API' Backends
Description: Backends implementing the 'Future' API, as defined by the 'future' package, should use the tests provided by this package to validate that they meet the minimal requirements of the 'Future' API. The tests can be performed easily from within R or from outside of R from the command line making it straightforward to include them in package tests and in Continuous Integration (CI) pipelines.
Author: Henrik Bengtsson [aut, cre, cph], The R Consortium [fnd] grant in 2017)
Maintainer: Henrik Bengtsson <henrikb@braju.com>

Diff between future.tests versions 0.6.0 dated 2023-03-11 and 0.7.0 dated 2023-05-22

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Package DImodels updated to version 1.2.1 with previous version 1.2 dated 2022-11-25

Title: Diversity-Interactions (DI) Models
Description: The 'DImodels' package is suitable for analysing data from biodiversity and ecosystem function studies using the Diversity-Interactions (DI) modelling approach introduced by Kirwan et al. (2009) <doi:10.1890/08-1684.1>. Suitable data will contain proportions for each species and a community-level response variable, and may also include additional factors, such as blocks or treatments. The package can perform data manipulation tasks, such as computing pairwise interactions (the DI_data() function), can perform an automated model selection process (the autoDI() function) and has the flexibility to fit a wide range of user-defined DI models (the DI() function).
Author: Rafael de Andrade Moral [aut, cre], John Connolly [aut], Rishabh Vishwakarma [ctb], Caroline Brophy [aut]
Maintainer: Rafael de Andrade Moral <rafael.deandrademoral@mu.ie>

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Package PINMA updated to version 1.1-2 with previous version 1.1-1 dated 2023-03-26

Title: Improved Methods for Constructing Prediction Intervals for Network Meta-Analysis
Description: Improved methods to construct prediction intervals for network meta-analysis. The parametric bootstrap and Kenward-Roger-type adjustment by Noma et al. (2022) <forthcoming> are implementable.
Author: Hisashi Noma [aut, cre]
Maintainer: Hisashi Noma <noma@ism.ac.jp>

Diff between PINMA versions 1.1-1 dated 2023-03-26 and 1.1-2 dated 2023-05-22

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Package boutliers updated to version 1.1-2 with previous version 1.1-1 dated 2020-11-04

Title: Outlier Detection and Influence Diagnostics for Meta-Analysis
Description: Computational tools for outlier detection and influence diagnostics of meta-analysis. Bootstrap distributions of the influence statistics are calculated, and the thresholds to determine outliers are explicitly provided.
Author: Hisashi Noma [aut, cre], Masahiko Gosho [aut]
Maintainer: Hisashi Noma <noma@ism.ac.jp>

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Sun, 21 May 2023

Package palinsol updated to version 1.0 with previous version 0.93 dated 2016-03-04

Title: Insolation for Palaeoclimate Studies
Description: R package to compute Incoming Solar Radiation (insolation) for palaeoclimate studies. Features three solutions: Berger (1978), Berger and Loutre (1991) and Laskar et al. (2004). Computes daily-mean, season-averaged and annual means and for all latitudes, and polar night dates.
Author: Michel Crucifix [aut, cre]
Maintainer: Michel Crucifix <michel.crucifix@uclouvain.be>

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Package dismo updated to version 1.3-14 with previous version 1.3-9 dated 2022-09-19

Title: Species Distribution Modeling
Description: Methods for species distribution modeling, that is, predicting the environmental similarity of any site to that of the locations of known occurrences of a species.
Author: Robert J. Hijmans, Steven Phillips, John Leathwick and Jane Elith
Maintainer: Robert J. Hijmans <r.hijmans@gmail.com>

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Package TreeBUGS updated to version 1.5.0 with previous version 1.4.9 dated 2022-09-06

Title: Hierarchical Multinomial Processing Tree Modeling
Description: User-friendly analysis of hierarchical multinomial processing tree (MPT) models that are often used in cognitive psychology. Implements the latent-trait MPT approach (Klauer, 2010) <DOI:10.1007/s11336-009-9141-0> and the beta-MPT approach (Smith & Batchelder, 2010) <DOI:10.1016/j.jmp.2009.06.007> to model heterogeneity of participants. MPT models are conveniently specified by an .eqn-file as used by other MPT software and data are provided by a .csv-file or directly in R. Models are either fitted by calling JAGS or by an MPT-tailored Gibbs sampler in C++ (only for nonhierarchical and beta MPT models). Provides tests of heterogeneity and MPT-tailored summaries and plotting functions. A detailed documentation is available in Heck, Arnold, & Arnold (2018) <DOI:10.3758/s13428-017-0869-7> and a tutorial on MPT modeling can be found in Schmidt, Erdfelder, & Heck (2022) <DOI:10.31234/osf.io/gh8md>.
Author: Daniel W. Heck [aut, cre] , Nina R. Arnold [aut, dtc], Denis Arnold [aut], Alexander Ly [ctb], Marius Barth [ctb]
Maintainer: Daniel W. Heck <daniel.heck@uni-marburg.de>

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 TreeBUGS-1.5.0/TreeBUGS/R/extendMPT.R                            |   78 +-
 TreeBUGS-1.5.0/TreeBUGS/R/fitBetaMPT.R                           |  276 ++++---
 TreeBUGS-1.5.0/TreeBUGS/R/fitBetaMPTcpp.R                        |   65 +
 TreeBUGS-1.5.0/TreeBUGS/R/fitModel.R                             |  259 +++----
 TreeBUGS-1.5.0/TreeBUGS/R/fitModelCpp.R                          |  289 ++++---
 TreeBUGS-1.5.0/TreeBUGS/R/fitSimpleMPT.R                         |   70 +
 TreeBUGS-1.5.0/TreeBUGS/R/fitTraitMPT.R                          |  337 ++++-----
 TreeBUGS-1.5.0/TreeBUGS/R/genDataBeta.R                          |  118 +--
 TreeBUGS-1.5.0/TreeBUGS/R/genDataCheck.R                         |  105 +-
 TreeBUGS-1.5.0/TreeBUGS/R/genDataMPT.R                           |  102 +-
 TreeBUGS-1.5.0/TreeBUGS/R/genDataTrait.R                         |  150 ++--
 TreeBUGS-1.5.0/TreeBUGS/R/getGroupMeans.R                        |  138 ++-
 TreeBUGS-1.5.0/TreeBUGS/R/getParam.R                             |  103 +-
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 TreeBUGS-1.5.0/TreeBUGS/R/input_functions.R                      |only
 TreeBUGS-1.5.0/TreeBUGS/R/makeModelDescription.R                 |  182 ++--
 TreeBUGS-1.5.0/TreeBUGS/R/parseEQN.R                             |   79 +-
 TreeBUGS-1.5.0/TreeBUGS/R/parseRestrictions.R                    |   74 --
 TreeBUGS-1.5.0/TreeBUGS/R/plotConvergence.R                      |   78 +-
 TreeBUGS-1.5.0/TreeBUGS/R/plotDistribution.R                     |   88 +-
 TreeBUGS-1.5.0/TreeBUGS/R/plotFit.R                              |   86 +-
 TreeBUGS-1.5.0/TreeBUGS/R/plotFrequencies.R                      |  117 +--
 TreeBUGS-1.5.0/TreeBUGS/R/plotParameters.R                       |   86 +-
 TreeBUGS-1.5.0/TreeBUGS/R/plotPrior.R                            |  149 ++--
 TreeBUGS-1.5.0/TreeBUGS/R/plotPriorPost.R                        |  152 ++--
 TreeBUGS-1.5.0/TreeBUGS/R/posteriorPredictive.R                  |  189 ++---
 TreeBUGS-1.5.0/TreeBUGS/R/printMPT.R                             |   92 +-
 TreeBUGS-1.5.0/TreeBUGS/R/priorPredictive.R                      |  125 ++-
 TreeBUGS-1.5.0/TreeBUGS/R/probitInverse.R                        |   85 +-
 TreeBUGS-1.5.0/TreeBUGS/R/readEQN.R                              |  153 ++--
 TreeBUGS-1.5.0/TreeBUGS/R/renameBUGSoutput.R                     |    7 
 TreeBUGS-1.5.0/TreeBUGS/R/sampleHyperprior.R                     |  146 ++-
 TreeBUGS-1.5.0/TreeBUGS/R/summarizeMCMC.R                        |   77 +-
 TreeBUGS-1.5.0/TreeBUGS/R/summarizeMPT.R                         |  220 +++--
 TreeBUGS-1.5.0/TreeBUGS/R/testHetChi.R                           |   93 +-
 TreeBUGS-1.5.0/TreeBUGS/R/testHetPerm.R                          |  146 ++-
 TreeBUGS-1.5.0/TreeBUGS/R/thetaHandling.R                        |  156 ++--
 TreeBUGS-1.5.0/TreeBUGS/R/transformedParModelfile.R              |  100 +-
 TreeBUGS-1.5.0/TreeBUGS/R/transformedParPosthoc.R                |  125 +--
 TreeBUGS-1.5.0/TreeBUGS/R/within_subject_EQN.R                   |   58 +
 TreeBUGS-1.5.0/TreeBUGS/R/writeSummaryToFile.R                   |   19 
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 TreeBUGS-1.5.0/TreeBUGS/inst/doc/TreeBUGS_1_intro.html           |  181 ++--
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 TreeBUGS-1.5.0/TreeBUGS/inst/doc/TreeBUGS_2_extended.Rmd         |   70 +
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 TreeBUGS-1.5.0/TreeBUGS/man/readEQN.Rd                           |   74 +-
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 TreeBUGS-1.5.0/TreeBUGS/tests/testthat/test_readEQN.R            |   15 
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 TreeBUGS-1.5.0/TreeBUGS/vignettes/TreeBUGS_2_extended.Rmd        |   70 +
 114 files changed, 6069 insertions(+), 4557 deletions(-)

More information about TreeBUGS at CRAN
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Package aRtsy updated to version 0.2.3 with previous version 0.2.2 dated 2023-04-23

Title: Generative Art with 'ggplot2'
Description: Provides algorithms for creating artworks in the 'ggplot2' language that incorporate some form of randomness.
Author: Koen Derks [aut, cre]
Maintainer: Koen Derks <koen-derks@hotmail.com>

Diff between aRtsy versions 0.2.2 dated 2023-04-23 and 0.2.3 dated 2023-05-21

 DESCRIPTION                         |   10 
 MD5                                 |  198 ++---
 NAMESPACE                           |    2 
 NEWS.md                             |    7 
 R/RcppExports.R                     |  104 +-
 R/canvas_ant.R                      |   66 +
 R/canvas_blacklight.R               |   32 
 R/canvas_chladni.R                  |   74 +-
 R/canvas_circlemap.R                |   46 -
 R/canvas_cobweb.R                   |   41 -
 R/canvas_collatz.R                  |   59 +
 R/canvas_diamonds.R                 |   26 
 R/canvas_flame.R                    |   52 -
 R/canvas_flow.R                     |   68 +
 R/canvas_forest.R                   |   12 
 R/canvas_function.R                 |   22 
 R/canvas_gemstone.R                 |   10 
 R/canvas_mandelbrot.R               |   24 
 R/canvas_maze.R                     |   56 -
 R/canvas_mesh.R                     |   24 
 R/canvas_mosaic.R                   |   12 
 R/canvas_nebula.R                   |   12 
 R/canvas_petri.R                    |   50 -
 R/canvas_phyllotaxis.R              |   24 
 R/canvas_planet.R                   |   31 
 R/canvas_polylines.R                |   20 
 R/canvas_recaman.R                  |   30 
 R/canvas_ribbons.R                  |   22 
 R/canvas_segments.R                 |   20 
 R/canvas_smoke.R                    |   22 
 R/canvas_splits.R                   |   26 
 R/canvas_squares.R                  |   24 
 R/canvas_stripes.R                  |   18 
 R/canvas_strokes.R                  |   26 
 R/canvas_swirls.R                   |only
 R/canvas_tiles.R                    |only
 R/canvas_turmite.R                  |   20 
 R/canvas_watercolors.R              |   28 
 R/colorPalette.R                    |   37 -
 R/internal.R                        |    2 
 R/theme_canvas.R                    |    2 
 README.md                           |  138 ++-
 inst/CITATION                       |    4 
 man/canvas_ant.Rd                   |   43 -
 man/canvas_blacklight.Rd            |   24 
 man/canvas_chladni.Rd               |   59 +
 man/canvas_circlemap.Rd             |   30 
 man/canvas_cobweb.Rd                |   19 
 man/canvas_collatz.Rd               |   32 
 man/canvas_diamonds.Rd              |   11 
 man/canvas_flame.Rd                 |   21 
 man/canvas_flow.Rd                  |   30 
 man/canvas_forest.Rd                |    6 
 man/canvas_function.Rd              |    9 
 man/canvas_gemstone.Rd              |    6 
 man/canvas_mandelbrot.Rd            |   15 
 man/canvas_maze.Rd                  |    9 
 man/canvas_mesh.Rd                  |   13 
 man/canvas_mosaic.Rd                |    6 
 man/canvas_nebula.Rd                |    7 
 man/canvas_petri.Rd                 |   10 
 man/canvas_phyllotaxis.Rd           |   11 
 man/canvas_planet.Rd                |   18 
 man/canvas_polylines.Rd             |   10 
 man/canvas_recaman.Rd               |   14 
 man/canvas_ribbons.Rd               |    6 
 man/canvas_segments.Rd              |   10 
 man/canvas_smoke.Rd                 |    9 
 man/canvas_splits.Rd                |   10 
 man/canvas_squares.Rd               |   10 
 man/canvas_stripes.Rd               |    7 
 man/canvas_strokes.Rd               |   10 
 man/canvas_swirls.Rd                |only
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 man/canvas_turmite.Rd               |   10 
 man/canvas_watercolors.Rd           |    9 
 man/colorPalette.Rd                 |    5 
 man/figures/colors.pdf              |binary
 man/figures/colors.svg              | 1307 ++++++++++++++++++------------------
 src/RcppExports.cpp                 |  326 ++++----
 src/canvas_ant.cpp                  |    8 
 src/canvas_chladni.cpp              |    6 
 src/canvas_circlemap.cpp            |   12 
 src/canvas_collatz.cpp              |   10 
 src/canvas_flame.cpp                |   46 -
 src/canvas_flow.cpp                 |   40 -
 src/canvas_maze.cpp                 |   67 -
 src/canvas_mesh.cpp                 |   28 
 src/canvas_petri.cpp                |   38 -
 src/canvas_phyllotaxis.cpp          |   13 
 src/canvas_planet.cpp               |   30 
 src/canvas_polylines.cpp            |   68 -
 src/canvas_recaman.cpp              |   15 
 src/canvas_smoke.cpp                |   58 -
 src/canvas_splits.cpp               |   80 --
 src/canvas_squares.cpp              |   13 
 src/canvas_strokes.cpp              |    8 
 src/canvas_swirls.cpp               |only
 src/canvas_tiles.cpp                |only
 src/canvas_turmite.cpp              |   10 
 src/canvas_watercolors.cpp          |   14 
 src/noise.cpp                       |   18 
 tests/testthat/test-all-paintings.R |   16 
 103 files changed, 2552 insertions(+), 1669 deletions(-)

More information about aRtsy at CRAN
Permanent link

Package zoib updated to version 1.6 with previous version 1.5.5 dated 2021-05-29

Title: Bayesian Inference for Beta Regression and Zero-or-One Inflated Beta Regression
Description: Fits beta regression and zero-or-one inflated beta regression and obtains Bayesian Inference of the model via the Markov Chain Monte Carlo approach implemented in JAGS.
Author: Fang Liu <fang.liu.131@nd.edu> with contributions from Yunchuan Kong
Maintainer: Fang Liu <fang.liu.131@nd.edu>

Diff between zoib versions 1.5.5 dated 2021-05-29 and 1.6 dated 2023-05-21

 DESCRIPTION              |    8 -
 MD5                      |   42 ++++----
 R/joint.1z.R             |   19 ++-
 R/joint.1z0.R            |   28 +++--
 R/joint.1z01.R           |   36 +++----
 R/joint.1z1.R            |   35 +++----
 R/joint.2z0.R            |   73 +++++++-------
 R/joint.2z01.R           |   88 +++++++++--------
 R/joint.2z1.R            |   73 +++++++-------
 R/sep.1z.R               |    2 
 R/sep.2z0.R              |    5 -
 R/zoib.R                 |  231 +++++++++++++++++++++++++++++++----------------
 inst/bugs/joint_1z.bug   |    2 
 inst/bugs/joint_1z0.bug  |   12 +-
 inst/bugs/joint_1z01.bug |   28 ++---
 inst/bugs/joint_1z1.bug  |    9 -
 inst/bugs/joint_2z0.bug  |    8 -
 inst/bugs/joint_2z01.bug |    4 
 inst/bugs/joint_2z1.bug  |    3 
 man/zoib-package.Rd      |    4 
 tests/test1.R            |    4 
 tests/test2.R            |   10 +-
 22 files changed, 410 insertions(+), 314 deletions(-)

More information about zoib at CRAN
Permanent link


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