Title: Reliability Analysis Methods for Structural Engineering
Description: Calculate the failure probability of civil engineering problems with Level I up to Level III Methods. Have fun and enjoy. References: Spaethe (1991, ISBN:3-211-82348-4) "Die Sicherheit tragender Baukonstruktionen", AU,BECK (2001) "Estimation of small failure probabilities in high dimensions by subset simulation." <doi:10.1016/S0266-8920(01)00019-4>, Breitung (1989) "Asymptotic approximations for probability integrals." <doi:10.1016/0266-8920(89)90024-6>.
Author: Konstantin Nille-Hauf [aut],
Tania Feiri [aut],
Marcus Ricker [aut],
Til Lux [aut, cre]
Maintainer: Til Lux <til.lux@tu-dortmund.de>
Diff between TesiproV versions 0.9.5 dated 2026-03-24 and 0.9.6 dated 2026-04-22
DESCRIPTION | 8 MD5 | 54 - NAMESPACE | 4 NEWS.md | 31 R/MCIS_helpers.R | 1598 +++++++++++++++++++++++++-------- R/MC_IS.R | 42 R/clsModelContainer.R | 552 +++++++++-- R/clsParam.R | 5 R/helper_debugPrint.R | 11 R/parallel_helpers.R |only R/zzz.R | 27 inst/doc/TesiproV-Vignette.R | 34 inst/doc/TesiproV-Vignette.Rmd | 130 ++ inst/doc/TesiproV-Vignette.html | 518 +++++++--- inst/extdata |only man/MC_IS_gsys.Rd |only man/MC_IS_single.Rd | 1 man/MC_IS_system.Rd | 9 man/PARAM_BASEVAR-class.Rd | 1 man/build_gsys.Rd |only man/create_rng_manager.Rd |only man/debug.print.Rd | 1 man/init_rng_master.Rd | 1 man/is_empty.Rd | 2 man/is_missing.Rd | 1 man/make_parallel_cluster.Rd |only man/run_parallel.Rd |only tests/testthat/test_MCIS_system.R | 903 +++++++++++++++--- tests/testthat/test_MC_IS_single.R |only tests/testthat/test_Methods_lnorm_x0.R | 24 tests/testthat/test_parallel.R |only vignettes/TesiproV-Vignette.Rmd | 130 ++ 32 files changed, 3237 insertions(+), 850 deletions(-)
Title: Creates a Scientific Project Skeleton as an R Package
Description: Provides a template for new research projects structured as an R
package-based research compendium. Everything - data, R scripts, custom
functions and manuscript or reports - is contained within the same package to
facilitate collaboration and promote reproducible research, following the FAIR
principles.
Author: Saskia Otto [aut, cre, cph]
Maintainer: Saskia Otto <saskia.a.otto@gmail.com>
Diff between SCIproj versions 1.0.0 dated 2026-03-18 and 1.0.1 dated 2026-04-22
DESCRIPTION | 8 +- MD5 | 20 +++--- NEWS.md | 37 ++++++++++++ R/create_proj.R | 91 ++++++++++++++++++++++--------- README.md | 32 ++++++++--- inst/WORDLIST | 3 + inst/doc/SCIproj.Rmd | 15 +++-- inst/doc/SCIproj.html | 34 ++++++++++- man/create_proj.Rd | 26 +++++++-- tests/testthat/test-create_proj.R | 109 +++++++++++++++++++++++++++++++++++++- vignettes/SCIproj.Rmd | 15 +++-- 11 files changed, 322 insertions(+), 68 deletions(-)
Title: Native Desktop App Framework for 'R'
Description: Build native Windows desktop applications using 'R' and
'WebView2'. Provides a robust 'R6'-based event loop, asynchronous
background task management via 'mirai' and 'callr', and a native
'Win32' message bridge for seamless 'R'-to-user-interface
communication without listening ports or network overhead. Allows 'R'
developers to create professional, standalone desktop tools with modern
web-based user interfaces while maintaining a pure 'R' backend.
Author: Janakiraman G [aut, cre] ,
Serge Zaitsev [cph] ),
Niels Lohmann [cph] ),
Microsoft Corporation [cph] )
Maintainer: Janakiraman G <janakiraman.bt@gmail.com>
Diff between RDesk versions 1.0.4 dated 2026-03-31 and 1.0.5 dated 2026-04-22
DESCRIPTION | 6 - MD5 | 29 +++-- NEWS.md | 42 +++++++ R/build.R | 189 ++++++++++++++++++++++++++--------- README.md | 10 + build/vignette.rds |binary inst/doc/ai_skill.Rmd |only inst/doc/ai_skill.html |only inst/doc/architecture.html | 2 inst/doc/cookbook.html | 4 inst/doc/getting-started.Rmd | 199 ++++++++++++++++++------------------- inst/doc/getting-started.html | 4 man/build_app.Rd | 18 ++- man/rdesk_copy_r_runtime.Rd |only man/rdesk_detect_r_home.Rd |only man/rdesk_validate_build_inputs.Rd | 3 vignettes/ai_skill.Rmd |only vignettes/getting-started.Rmd | 199 ++++++++++++++++++------------------- 18 files changed, 435 insertions(+), 270 deletions(-)
Title: Geospatial Regression Equation for European Nutrient Losses
(GREEN)
Description: Tools and methods to apply the model Geospatial Regression Equation
for European Nutrient losses (GREEN);
Grizzetti et al. (2005) <doi:10.1016/j.jhydrol.2004.07.036>;
Grizzetti et al. (2008);
Grizzetti et al. (2012) <doi:10.1111/j.1365-2486.2011.02576.x>;
Grizzetti et al. (2021) <doi:10.1016/j.gloenvcha.2021.102281>.
Author: A. Udias [aut],
B. Grizzetti [aut],
O. Vigiak [aut],
J. Gomez [aut],
C. Alfaro [aut, cre],
A. Aloe [aut]
Maintainer: C. Alfaro <c.alfarog@gmail.com>
Diff between GREENeR versions 1.0.1 dated 2026-02-11 and 1.0.2 dated 2026-04-22
DESCRIPTION | 12 +- MD5 | 18 +-- NAMESPACE | 2 NEWS.md | 6 + R/rgreen.R | 53 +++++---- R/rgreen_plots.R | 8 - build/partial.rdb |binary build/vignette.rds |binary inst/doc/GREENeR.R | 280 +++++++++++++++++++++++++------------------------- inst/doc/GREENeR.html | 106 +++++------------- 10 files changed, 229 insertions(+), 256 deletions(-)
Title: Simplified Legend and Guide Alignment for 'ggplot2'
Description: Provides one-liner functions for common legend and guide operations
in 'ggplot2'. Simplifies legend positioning, styling, wrapping, and
collection across multi-panel plots created with 'patchwork' or 'cowplot'.
Author: Gilles Colling [aut, cre]
Maintainer: Gilles Colling <gilles.colling051@gmail.com>
Diff between ggguides versions 1.1.4 dated 2026-01-09 and 1.1.5 dated 2026-04-22
DESCRIPTION | 6 +- MD5 | 43 +++++++-------- NEWS.md | 21 +++++++ R/legend_style.R | 33 +++++++++++ README.md | 115 +++++++++++++++++++++++++++++++++++++---- inst/doc/getting-started.Rmd | 5 + inst/doc/getting-started.html | 32 +++++------ inst/doc/multiple-legends.R | 28 +++++++++ inst/doc/multiple-legends.Rmd | 48 +++++++++++++++++ inst/doc/multiple-legends.html | 105 +++++++++++++++++++++++++++---------- inst/doc/patchwork.Rmd | 3 + inst/doc/patchwork.html | 24 ++++---- inst/doc/positioning.Rmd | 1 inst/doc/positioning.html | 22 +++---- inst/doc/styling.Rmd | 6 ++ inst/doc/styling.html | 48 ++++++++--------- man/legend_style.Rd | 18 ++++++ tests/testthat/Rplots.pdf |only vignettes/getting-started.Rmd | 5 + vignettes/multiple-legends.Rmd | 48 +++++++++++++++++ vignettes/patchwork.Rmd | 3 + vignettes/positioning.Rmd | 1 vignettes/styling.Rmd | 6 ++ 23 files changed, 493 insertions(+), 128 deletions(-)
Title: Additional Univariate and Multivariate Distributions
Description: Density, distribution function, quantile function
and random generation for a number of univariate
and multivariate distributions. This package implements the
following distributions: Bernoulli, beta-binomial, beta-negative
binomial, beta prime, Bhattacharjee, Birnbaum-Saunders,
bivariate normal, bivariate Poisson, categorical, Dirichlet,
Dirichlet-multinomial, discrete gamma, discrete Laplace,
discrete normal, discrete uniform, discrete Weibull, Frechet,
gamma-Poisson, generalized extreme value, Gompertz,
generalized Pareto, Gumbel, half-Cauchy, half-normal, half-t,
Huber density, inverse chi-squared, inverse-gamma, Kumaraswamy,
Laplace, location-scale t, logarithmic, Lomax, multivariate
hypergeometric, multinomial, negative hypergeometric,
non-standard beta, normal mixture, Poisson mixture, Pareto,
power, reparametrized beta, Rayleigh, shifted Gompertz, Skellam,
slash, triangular, truncated binomial, truncated normal,
truncated Poisson, Tukey lambda, Wald, zero-inflated binomial,
zer [...truncated...]
Author: Tymoteusz Wolodzko [aut],
Sigbert Klinke [cre],
Thomas Farrar [ctb]
Maintainer: Sigbert Klinke <sigbert@wiwi.hu-berlin.de>
Diff between extraDistr versions 1.10.0.2 dated 2026-01-18 and 1.10.0.3 dated 2026-04-22
DESCRIPTION | 18 ++++++++++++------ MD5 | 10 +++++----- NEWS.md | 4 ++++ R/dirichlet-distribution.R | 7 +++---- man/Dirichlet.Rd | 7 +++---- man/extraDistr-package.Rd | 5 +++++ 6 files changed, 32 insertions(+), 19 deletions(-)
Title: Disaster Victim Identification
Description: Joint DNA-based disaster victim identification (DVI), as
described in Vigeland and Egeland (2021)
<doi:10.21203/rs.3.rs-296414/v1>. Identification is performed by
optimising the joint likelihood of all victim samples and reference
individuals. Individual identification probabilities, conditional on
all available information, are derived from the joint solution in the
form of posterior pairing probabilities. 'dvir' is part of the
'pedsuite' collection of packages for pedigree analysis.
Author: Magnus Dehli Vigeland [aut, cre] ,
Thore Egeland [aut]
Maintainer: Magnus Dehli Vigeland <m.d.vigeland@medisin.uio.no>
Diff between dvir versions 3.3.0 dated 2024-09-09 and 3.4.0 dated 2026-04-22
dvir-3.3.0/dvir/data/KETPch4.rda |only dvir-3.3.0/dvir/data/KETPex481.rda |only dvir-3.3.0/dvir/data/KETPex497.rda |only dvir-3.3.0/dvir/data/KETPex498.rda |only dvir-3.3.0/dvir/man/KETPch4.Rd |only dvir-3.3.0/dvir/man/KETPex481.Rd |only dvir-3.3.0/dvir/man/KETPex497.Rd |only dvir-3.3.0/dvir/man/KETPex498.Rd |only dvir-3.4.0/dvir/DESCRIPTION | 19 - dvir-3.4.0/dvir/MD5 | 104 +++---- dvir-3.4.0/dvir/NAMESPACE | 2 dvir-3.4.0/dvir/NEWS.md | 27 + dvir-3.4.0/dvir/R/addVictims.R |only dvir-3.4.0/dvir/R/amDrivenDVI.R | 185 +++++++++--- dvir-3.4.0/dvir/R/data.R | 55 +-- dvir-3.4.0/dvir/R/dviCompare.R | 6 dvir-3.4.0/dvir/R/dviData.R | 149 +++++++--- dvir-3.4.0/dvir/R/dviSim.R | 6 dvir-3.4.0/dvir/R/dviSolve.R | 249 ++++++++++++----- dvir-3.4.0/dvir/R/familias2dvir.R | 20 - dvir-3.4.0/dvir/R/findExcluded.R | 16 - dvir-3.4.0/dvir/R/findNonidentifiable.R | 64 ++-- dvir-3.4.0/dvir/R/findUndisputed.R | 35 +- dvir-3.4.0/dvir/R/formatSummary.R | 34 +- dvir-3.4.0/dvir/R/getDatabase.R |only dvir-3.4.0/dvir/R/jointDVI.R | 62 +++- dvir-3.4.0/dvir/R/pairwiseGLR.R | 4 dvir-3.4.0/dvir/R/pairwiseLR.R | 6 dvir-3.4.0/dvir/R/plotDVI.R | 42 +- dvir-3.4.0/dvir/R/sequentialDVI.R | 4 dvir-3.4.0/dvir/R/subsetDVI.R | 56 ++- dvir-3.4.0/dvir/R/utils.R | 29 + dvir-3.4.0/dvir/README.md | 132 ++++----- dvir-3.4.0/dvir/build/partial.rdb |binary dvir-3.4.0/dvir/data/KETPchap481.rda |only dvir-3.4.0/dvir/data/KETPchap484.rda |only dvir-3.4.0/dvir/data/KETPexer497.rda |only dvir-3.4.0/dvir/data/KETPexer498.rda |only dvir-3.4.0/dvir/man/KETPchap481.Rd |only dvir-3.4.0/dvir/man/KETPchap484.Rd |only dvir-3.4.0/dvir/man/KETPexer497.Rd |only dvir-3.4.0/dvir/man/KETPexer498.Rd |only dvir-3.4.0/dvir/man/addVictims.Rd |only dvir-3.4.0/dvir/man/amDrivenDVI.Rd | 2 dvir-3.4.0/dvir/man/dviSolve.Rd | 48 ++- dvir-3.4.0/dvir/man/example1.Rd | 1 dvir-3.4.0/dvir/man/example2.Rd | 3 dvir-3.4.0/dvir/man/familias2dvir.Rd | 2 dvir-3.4.0/dvir/man/figures/README-example-plot1-1.png |binary dvir-3.4.0/dvir/man/figures/README-example-plot2-1.png |binary dvir-3.4.0/dvir/man/figures/README-solution-1.png |binary dvir-3.4.0/dvir/man/findNonidentifiable.Rd | 13 dvir-3.4.0/dvir/man/findUndisputed.Rd | 3 dvir-3.4.0/dvir/man/fire.Rd | 4 dvir-3.4.0/dvir/man/getDatabase.Rd |only dvir-3.4.0/dvir/man/getFamily.Rd | 5 dvir-3.4.0/dvir/man/grave.Rd | 5 dvir-3.4.0/dvir/man/icmp.Rd | 7 dvir-3.4.0/dvir/man/jointDVI.Rd | 23 + dvir-3.4.0/dvir/man/pairwiseLR.Rd | 2 dvir-3.4.0/dvir/man/planecrash.Rd | 7 dvir-3.4.0/dvir/man/plotDVI.Rd | 7 dvir-3.4.0/dvir/man/subsetDVI.Rd | 24 + 63 files changed, 969 insertions(+), 493 deletions(-)
Title: Create Spreadsheet Publications Following Best Practice
Description: Generate spreadsheet publications that follow best practice
guidance from the UK government's Analysis Function, available at
<https://analysisfunction.civilservice.gov.uk/policy-store/releasing-statistics-in-spreadsheets/>,
with a focus on accessibility. See also the 'Python' package 'gptables'.
Author: Matt Dray [aut],
Tim Taylor [ctb],
Matt Kerlogue [ctb],
Crown Copyright [cph],
Olivia Box Power [cre, ctb],
Zachary Gleisner [ctb]
Maintainer: Olivia Box Power <Olivia.BoxPower@dhsc.gov.uk>
Diff between aftables versions 2.0.0 dated 2026-03-20 and 2.0.1 dated 2026-04-22
DESCRIPTION | 6 MD5 | 10 - NAMESPACE | 1 NEWS.md | 414 ++++++++++++++++++++++++------------------------- R/aftables-package.R | 1 inst/doc/aftables.html | 40 ++-- 6 files changed, 239 insertions(+), 233 deletions(-)
Title: Soil Health Assessment Models for Assessing Soil Conditions and
Suitability
Description: Soil health assessment builds information to improve decision in
soil management. It facilitates assessment of soil conditions for crop suitability [such as those given by FAO
<https://www.fao.org/land-water/databases-and-software/crop-information/en/>],
groundwater recharge, fertility, erosion, salinization [<doi:10.1002/ldr.4211>],
carbon sequestration, irrigation potential, and status of soil resources.
Author: Christian Thine Omuto [aut, cre]
Maintainer: Christian Thine Omuto <thineomuto@yahoo.com>
Diff between soilassessment versions 0.3.2 dated 2026-04-13 and 1.3.0 dated 2026-04-22
DESCRIPTION | 6 +- MD5 | 76 ++++++++++++++------------ NAMESPACE | 2 R/CECSuit.R | 121 +++++------------------------------------- R/ECSuit.R | 124 ++++++------------------------------------- R/ECharm_Info.R | 2 R/ESPSuit.R | 126 +++++++------------------------------------- R/PHSuit.R | 122 ++++++------------------------------------- R/PHharm_Info.R | 2 R/SOCSuit.R | 123 ++++++------------------------------------- R/appendTextureclass.R | 101 ++++++++++++----------------------- R/bulkdenSuit.R | 125 +++++--------------------------------------- R/calcSuit.R |only R/carbonateSuit.R | 127 +++++++------------------------------------- R/demSuit.R | 129 +++++++-------------------------------------- R/depthSuit.R | 123 ++++++------------------------------------- R/erosionSuit.R | 116 ++++------------------------------------- R/fertilitySuit.R | 119 ++++-------------------------------------- R/getSuit.R |only R/physicalSuit.R | 130 +++++++--------------------------------------- R/porositySuit.R | 121 ++++-------------------------------------- R/slopeSuit.R | 129 +++++++-------------------------------------- R/stoneSuit.R | 123 ++++++------------------------------------- R/surveyPoints.R | 31 +++------- man/ECSuit.Rd | 12 ---- man/ECharm_Info.Rd | 22 +++++++ man/PHharm_Info.Rd | 22 +++++++ man/SOCSuit.Rd | 8 +- man/appendTextureclass.Rd | 4 - man/calcSuit.Rd |only man/carbonateSuit.Rd | 6 -- man/depthSuit.Rd | 10 --- man/fertilitySuit.Rd | 5 + man/getSuit.Rd |only man/reclassifyMap.Rd | 10 +-- man/slopeSuit.Rd | 12 ++-- man/sloplenFUN.Rd | 2 man/stoneSuit.Rd | 2 man/suitability.Rd | 2 man/surveyPoints.Rd | 8 +- man/tempSuit.Rd | 2 41 files changed, 427 insertions(+), 1778 deletions(-)
More information about soilassessment at CRAN
Permanent link
Title: Execute and Control System Processes
Description: Tools to run system processes in the background. It can
check if a background process is running; wait on a background process
to finish; get the exit status of finished processes; kill background
processes. It can read the standard output and error of the processes,
using non-blocking connections. 'processx' can poll a process for
standard output or error, with a timeout. It can also poll several
processes at once.
Author: Gabor Csardi [aut, cre, cph] ,
Winston Chang [aut],
Posit Software, PBC [cph, fnd] ,
Ascent Digital Services [cph, fnd]
Maintainer: Gabor Csardi <csardi.gabor@gmail.com>
Diff between processx versions 3.8.7 dated 2026-04-01 and 3.9.0 dated 2026-04-22
DESCRIPTION | 10 MD5 | 138 ++++----- NAMESPACE | 5 NEWS.md | 57 +++ R/assertions.R | 13 R/connections.R | 48 +++ R/initialize.R | 58 +++- R/io.R | 49 +++ R/on-load.R | 10 R/pipeline.R |only R/print.R | 12 R/process.R | 189 ++++++++++--- R/run.R | 244 +++++++++++++--- R/standalone-errors.R | 54 ++- R/utils.R | 34 ++ README.md | 11 man/pipeline.Rd |only man/poll.Rd | 2 man/process.Rd | 175 ++++++++++-- man/process_initialize.Rd | 3 man/processx-package.Rd | 2 man/processx_connections.Rd | 30 +- man/run.Rd | 31 +- src/create-time.c | 51 +++ src/init.c | 76 +++++ src/processx-connection.c | 143 ++++++++- src/processx-connection.h | 6 src/processx.h | 7 src/tools/px.c | 56 +++ src/unix/processx-unix.h | 2 src/unix/processx.c | 76 ++++- src/unix/utils.c | 17 + src/win/named_pipe.c | 3 src/win/processx-win.h | 6 src/win/processx.c | 376 +++++++++++++++++++++++++- src/win/stdio.c | 39 ++ src/win/utils.c | 18 + tests/testthat/_snaps/Darwin/process.md | 12 tests/testthat/_snaps/Darwin/run.md | 6 tests/testthat/_snaps/Darwin/unix-sockets.md | 22 - tests/testthat/_snaps/Linux/process.md | 12 tests/testthat/_snaps/Linux/run.md | 6 tests/testthat/_snaps/Linux/unix-sockets.md | 22 - tests/testthat/_snaps/Windows/process.md | 12 tests/testthat/_snaps/Windows/run.md | 6 tests/testthat/_snaps/Windows/unix-sockets.md | 6 tests/testthat/_snaps/err-output.md | 26 - tests/testthat/_snaps/errors.md | 6 tests/testthat/_snaps/fifo.md | 4 tests/testthat/_snaps/io.md | 22 - tests/testthat/_snaps/newcli/err-output.md | 8 tests/testthat/_snaps/process.md | 2 tests/testthat/_snaps/pty.md | 2 tests/testthat/_snaps/run.md |only tests/testthat/_snaps/standalone-errors.md | 8 tests/testthat/_snaps/unix-sockets.md | 24 - tests/testthat/_snaps/utils.md | 6 tests/testthat/helper.R | 29 ++ tests/testthat/test-env.R | 8 tests/testthat/test-fifo.R | 1 tests/testthat/test-io.R | 62 ++++ tests/testthat/test-kill-tree.R | 24 - tests/testthat/test-pipeline.R |only tests/testthat/test-poll-curl.R | 4 tests/testthat/test-print.R | 19 + tests/testthat/test-process.R | 140 +++++++++ tests/testthat/test-pty.R | 72 ++++ tests/testthat/test-run.R | 164 +++++++++++ tests/testthat/test-standalone-errors.R | 4 tests/testthat/test-unix-sockets.R | 34 +- tests/testthat/test-utils.R | 18 + tools/valgrind.supp | 20 - 72 files changed, 2446 insertions(+), 416 deletions(-)
Title: Explore the R Package Dependencies on the Comprehensive R
Archive Network (CRAN) Like Repositories
Description: Explore various dependencies of a packages (on the Comprehensive R Archive Network Like repositories). The functions get_neighborhood() and get_dependencies() provide dependencies of packages and as_graph() can be used to convert into a 'igraph' object for further analysis and plotting.
Author: Komala Sheshachala Srikanth [aut, cre],
Singh Nikhil [aut]
Maintainer: Komala Sheshachala Srikanth <sri.teach@gmail.com>
Diff between pkggraph versions 0.3.0 dated 2026-02-23 and 0.3.1 dated 2026-04-22
DESCRIPTION | 6 ++-- MD5 | 20 +++++++-------- NAMESPACE | 2 - NEWS.md | 4 +++ R/core.R | 5 ++- R/init.R | 41 ++++++++++++++++++------------- R/pkggraph-package.R | 2 - README.md | 14 +++++----- man/figures/README-unnamed-chunk-2-1.png |binary man/init.Rd | 10 +++---- man/pkggraph-package.Rd | 2 - 11 files changed, 57 insertions(+), 49 deletions(-)
Title: An Object Oriented System Meant to Become a Successor to S3 and
S4
Description: A new object oriented programming system designed to be a
successor to S3 and S4. It includes formal class, generic, and method
specification, and a limited form of multiple dispatch. It has been
designed and implemented collaboratively by the R Consortium
Object-Oriented Programming Working Group, which includes
representatives from R-Core, 'Bioconductor', 'Posit'/'tidyverse', and
the wider R community.
Author: Object-Oriented Programming Working Group [cph],
Davis Vaughan [aut],
Jim Hester [aut] ,
Tomasz Kalinowski [aut],
Will Landau [aut],
Michael Lawrence [aut],
Martin Maechler [aut] ,
Luke Tierney [aut],
Hadley Wickham [aut, cre]
Maintainer: Hadley Wickham <hadley@posit.co>
Diff between S7 versions 0.2.1-1 dated 2026-04-15 and 0.2.2 dated 2026-04-22
DESCRIPTION | 6 +- MD5 |only NEWS.md | 4 + build/vignette.rds |binary inst/doc/S7.html | 7 +-- inst/doc/classes-objects.html | 5 +- inst/doc/compatibility.html | 5 +- inst/doc/generics-methods.html | 5 +- inst/doc/motivation.html | 5 +- inst/doc/packages.html | 5 +- inst/doc/performance.html | 95 ++++++++++++++++++++--------------------- src/compat.h |only src/init.c | 6 -- src/method-dispatch.c | 10 +--- src/prop.c | 23 ++++++--- 15 files changed, 93 insertions(+), 83 deletions(-)
Title: Interactive 3D Brain Atlas Visualization
Description: Plot brain atlases as interactive 3D meshes using 'Three.js'
via 'htmlwidgets', or render publication-quality static images through
'rgl' and 'rayshader'. A pipe-friendly API lets you map data onto
brain regions, control camera angles, toggle region edges, overlay
glass brains, and snapshot or ray-trace the result. Additional
atlases are available through the 'ggsegverse' r-universe. Mowinckel
& Vidal-Piñeiro (2020) <doi:10.1177/2515245920928009>.
Author: Athanasia Mo Mowinckel [aut, cre] ,
Didac Vidal-Pineiro [aut] ,
Center for Lifespan Changes in Brain and Cognition , University
of Oslo [cph],
three.js authors [ctb, cph]
Maintainer: Athanasia Mo Mowinckel <a.m.mowinckel@psykologi.uio.no>
Diff between ggseg3d versions 2.1.0 dated 2026-04-09 and 2.1.1 dated 2026-04-22
ggseg3d-2.1.0/ggseg3d/man/position_hemisphere.Rd |only ggseg3d-2.1.1/ggseg3d/DESCRIPTION | 18 +- ggseg3d-2.1.1/ggseg3d/LICENSE.note |only ggseg3d-2.1.1/ggseg3d/MD5 | 61 ++++----- ggseg3d-2.1.1/ggseg3d/NEWS.md | 35 +++++ ggseg3d-2.1.1/ggseg3d/R/additions.R | 98 ++++++++------- ggseg3d-2.1.1/ggseg3d/R/brain-mesh.R | 110 ++++++----------- ggseg3d-2.1.1/ggseg3d/R/ggseg3d.R | 26 ---- ggseg3d-2.1.1/ggseg3d/R/rayshader.R | 3 ggseg3d-2.1.1/ggseg3d/R/widget-output.R | 6 ggseg3d-2.1.1/ggseg3d/inst/WORDLIST | 9 + ggseg3d-2.1.1/ggseg3d/man/add_glassbrain.Rd | 12 + ggseg3d-2.1.1/ggseg3d/man/build_centerline_data.Rd | 4 ggseg3d-2.1.1/ggseg3d/man/ggseg3d-package.Rd | 1 ggseg3d-2.1.1/ggseg3d/man/ggseg3d-shiny.Rd | 2 ggseg3d-2.1.1/ggseg3d/man/ggseg3d.Rd | 2 ggseg3d-2.1.1/ggseg3d/man/ggsegray.Rd | 1 ggseg3d-2.1.1/ggseg3d/man/pan_camera.Rd | 4 ggseg3d-2.1.1/ggseg3d/man/resolve_brain_mesh.Rd | 11 - ggseg3d-2.1.1/ggseg3d/man/set_background.Rd | 4 ggseg3d-2.1.1/ggseg3d/man/set_dimensions.Rd | 2 ggseg3d-2.1.1/ggseg3d/man/set_edges.Rd | 4 ggseg3d-2.1.1/ggseg3d/man/set_flat_shading.Rd | 2 ggseg3d-2.1.1/ggseg3d/man/set_legend.Rd | 3 ggseg3d-2.1.1/ggseg3d/man/set_orthographic.Rd | 2 ggseg3d-2.1.1/ggseg3d/man/set_positioning.Rd | 30 ++-- ggseg3d-2.1.1/ggseg3d/man/updateGgseg3dBackground.Rd | 2 ggseg3d-2.1.1/ggseg3d/man/updateGgseg3dCamera.Rd | 2 ggseg3d-2.1.1/ggseg3d/tests/testthat/_snaps |only ggseg3d-2.1.1/ggseg3d/tests/testthat/helper-visual.R |only ggseg3d-2.1.1/ggseg3d/tests/testthat/test-additions.R | 31 +++- ggseg3d-2.1.1/ggseg3d/tests/testthat/test-brain-mesh.R | 66 +++++----- ggseg3d-2.1.1/ggseg3d/tests/testthat/test-ggseg3d.R | 27 ++++ ggseg3d-2.1.1/ggseg3d/tests/testthat/test-visual.R |only 34 files changed, 328 insertions(+), 250 deletions(-)
Title: Tests for Variance Homogeneity
Description: Performs 18 omnibus tests yielding a total of 28 distinct methodological variations for testing the composite hypothesis of variance homogeneity.
Author: Gozde Cosar [aut],
Muhammed Ali Yilmaz [aut],
Merve Kasikci [aut],
Osman Dag [aut, cre]
Maintainer: Osman Dag <osman.dag@outlook.com>
Diff between vartest versions 1.4 dated 2026-04-07 and 1.5 dated 2026-04-22
vartest-1.4/vartest/R/adjusted.taha.test.R |only vartest-1.4/vartest/R/taha.test.R |only vartest-1.4/vartest/man/adjusted.taha.test.Rd |only vartest-1.4/vartest/man/taha.test.Rd |only vartest-1.5/vartest/DESCRIPTION | 12 +++---- vartest-1.5/vartest/MD5 | 34 +++++++++----------- vartest-1.5/vartest/NAMESPACE | 6 ++- vartest-1.5/vartest/R/select_vartest.R |only vartest-1.5/vartest/man/ansari.test.Rd | 2 - vartest-1.5/vartest/man/capon.test.Rd | 2 - vartest-1.5/vartest/man/david.barton.test.Rd | 6 +-- vartest-1.5/vartest/man/duran.test.Rd | 3 + vartest-1.5/vartest/man/fk.test.Rd | 6 +-- vartest-1.5/vartest/man/klotz.test.Rd | 2 - vartest-1.5/vartest/man/mood.test.Rd | 2 - vartest-1.5/vartest/man/print.summary.vht.Rd | 2 - vartest-1.5/vartest/man/select_vartest.Rd |only vartest-1.5/vartest/man/siegel.tukey.test.Rd | 4 +- vartest-1.5/vartest/man/summary.vht.Rd | 2 - vartest-1.5/vartest/man/talwar.gentle.test.Rd | 2 - vartest-1.5/vartest/tests/testthat/testthat-vht.R | 37 +++++----------------- 21 files changed, 53 insertions(+), 69 deletions(-)
Title: A Wrapper for the 'Highcharts' Library
Description: A wrapper for the 'Highcharts' library including
shortcut functions to plot R objects. 'Highcharts'
<https://www.highcharts.com/> is a charting library offering
numerous chart types with a simple configuration syntax.
Author: Joshua Kunst [aut, cre],
Nuno Agostinho [ctb] ,
Danton Noriega [ctb] ,
Martin John Hadley [ctb] ,
Eduardo Flores [ctb] ,
Dean Kilfoyle [ctb] ,
Adline Dsilva [ctb] ,
Kamil Slowikowski [ctb] ,
Christian Minich [ctb] ,
Jonathan Armond [ctb] ,
David Breu [...truncated...]
Maintainer: Joshua Kunst <jbkunst@gmail.com>
Diff between highcharter versions 0.9.4 dated 2022-01-03 and 0.9.5 dated 2026-04-22
highcharter-0.9.4/highcharter/man/highcharter.Rd |only highcharter-0.9.5/highcharter/DESCRIPTION | 11 highcharter-0.9.5/highcharter/MD5 | 383 - highcharter-0.9.5/highcharter/NAMESPACE | 562 +- highcharter-0.9.5/highcharter/NEWS.md | 576 +- highcharter-0.9.5/highcharter/R/data-helpers.R | 488 +- highcharter-0.9.5/highcharter/R/data.R | 494 +- highcharter-0.9.5/highcharter/R/export_hc.R | 156 highcharter-0.9.5/highcharter/R/globals.R | 26 highcharter-0.9.5/highcharter/R/hchart-shorcuts.R | 952 ++-- highcharter-0.9.5/highcharter/R/hchart.R | 79 highcharter-0.9.5/highcharter/R/helpers.R | 820 +-- highcharter-0.9.5/highcharter/R/highcharter-package.R | 86 highcharter-0.9.5/highcharter/R/highcharter.R | 528 +- highcharter-0.9.5/highcharter/R/highcharts-api-add.R | 1558 +++--- highcharter-0.9.5/highcharter/R/highcharts-api-helpers.R | 1048 ++-- highcharter-0.9.5/highcharter/R/highcharts-api.R | 2260 +++++----- highcharter-0.9.5/highcharter/R/highmaps.R | 448 + highcharter-0.9.5/highcharter/R/icons.R | 78 highcharter-0.9.5/highcharter/R/proxy.R | 646 +- highcharter-0.9.5/highcharter/R/theme-alone.R | 188 highcharter-0.9.5/highcharter/R/theme-bloom.R | 278 - highcharter-0.9.5/highcharter/R/theme-elementary.R | 128 highcharter-0.9.5/highcharter/R/theme-ffx.R | 2 highcharter-0.9.5/highcharter/R/theme-flatdark.R | 130 highcharter-0.9.5/highcharter/R/theme-ggplot2.R | 132 highcharter-0.9.5/highcharter/R/theme-hcrt.R | 224 highcharter-0.9.5/highcharter/R/theme-smpl.R | 2 highcharter-0.9.5/highcharter/R/theme-superheroes.R | 150 highcharter-0.9.5/highcharter/R/theme-tufte.R | 162 highcharter-0.9.5/highcharter/README.md | 104 highcharter-0.9.5/highcharter/inst/WORDLIST | 392 - highcharter-0.9.5/highcharter/inst/htmlwidgets/highchart.yaml | 194 highcharter-0.9.5/highcharter/inst/htmlwidgets/highchartzero.js | 68 highcharter-0.9.5/highcharter/inst/htmlwidgets/highchartzero.yaml | 22 highcharter-0.9.5/highcharter/inst/htmlwidgets/lib/highcharts/css/htmlwdgtgrid.css | 558 +- highcharter-0.9.5/highcharter/inst/htmlwidgets/lib/highcharts/css/motion.css | 96 highcharter-0.9.5/highcharter/inst/htmlwidgets/lib/highcharts/custom/appear.js | 140 highcharter-0.9.5/highcharter/inst/htmlwidgets/lib/highcharts/custom/delay-animation.js | 270 - highcharter-0.9.5/highcharter/inst/htmlwidgets/lib/highcharts/custom/reset.js | 24 highcharter-0.9.5/highcharter/inst/htmlwidgets/lib/highcharts/custom/symbols-extra.js | 92 highcharter-0.9.5/highcharter/inst/htmlwidgets/lib/highcharts/custom/text-symbols.js | 80 highcharter-0.9.5/highcharter/inst/htmlwidgets/lib/highcharts/custom/tooltip-delay.js | 94 highcharter-0.9.5/highcharter/inst/htmlwidgets/lib/highcharts/modules/map.js | 304 - highcharter-0.9.5/highcharter/inst/htmlwidgets/lib/highcharts/plugins/draggable-legend.js | 192 highcharter-0.9.5/highcharter/inst/htmlwidgets/lib/highcharts/plugins/grouped-categories.js | 1252 ++--- highcharter-0.9.5/highcharter/inst/htmlwidgets/lib/highcharts/plugins/highcharts-regression.js | 1334 ++--- highcharter-0.9.5/highcharter/inst/htmlwidgets/lib/highcharts/plugins/motion.js | 512 +- highcharter-0.9.5/highcharter/inst/htmlwidgets/lib/highcharts/plugins/multicolor_series.js | 1314 ++--- highcharter-0.9.5/highcharter/inst/htmlwidgets/lib/jquery/jquery.min.js | 4 highcharter-0.9.5/highcharter/inst/htmlwidgets/lib/proj4js/proj4.js | 4 highcharter-0.9.5/highcharter/man/citytemp.Rd | 60 highcharter-0.9.5/highcharter/man/citytemp_long.Rd | 54 highcharter-0.9.5/highcharter/man/color_classes.Rd | 40 highcharter-0.9.5/highcharter/man/color_stops.Rd | 40 highcharter-0.9.5/highcharter/man/colorize.Rd | 44 highcharter-0.9.5/highcharter/man/data_to_boxplot.Rd | 104 highcharter-0.9.5/highcharter/man/data_to_hierarchical.Rd | 88 highcharter-0.9.5/highcharter/man/data_to_sankey.Rd | 54 highcharter-0.9.5/highcharter/man/datetime_to_timestamp.Rd | 50 highcharter-0.9.5/highcharter/man/df_to_annotations_labels.Rd | 48 highcharter-0.9.5/highcharter/man/download_map_data.Rd | 70 highcharter-0.9.5/highcharter/man/export_hc.Rd | 96 highcharter-0.9.5/highcharter/man/favorite_bars.Rd | 54 highcharter-0.9.5/highcharter/man/favorite_pies.Rd | 54 highcharter-0.9.5/highcharter/man/figures/circle.svg | 478 +- highcharter-0.9.5/highcharter/man/figures/hexicon.svg | 502 +- highcharter-0.9.5/highcharter/man/figures/square.svg | 480 +- highcharter-0.9.5/highcharter/man/get_data_from_map.Rd | 48 highcharter-0.9.5/highcharter/man/get_hc_series_from_df.Rd | 46 highcharter-0.9.5/highcharter/man/globaltemp.Rd | 62 highcharter-0.9.5/highcharter/man/hc_add_annotation.Rd | 50 highcharter-0.9.5/highcharter/man/hc_add_dependency.Rd | 68 highcharter-0.9.5/highcharter/man/hc_add_dependency_fa.Rd | 44 highcharter-0.9.5/highcharter/man/hc_add_event_point.Rd | 62 highcharter-0.9.5/highcharter/man/hc_add_series.Rd | 48 highcharter-0.9.5/highcharter/man/hc_add_series.character.Rd | 42 highcharter-0.9.5/highcharter/man/hc_add_series.data.frame.Rd | 50 highcharter-0.9.5/highcharter/man/hc_add_series.density.Rd | 36 highcharter-0.9.5/highcharter/man/hc_add_series.forecast.Rd | 70 highcharter-0.9.5/highcharter/man/hc_add_series.geo_json.Rd | 46 highcharter-0.9.5/highcharter/man/hc_add_series.lm.Rd | 84 highcharter-0.9.5/highcharter/man/hc_add_series.numeric.Rd | 36 highcharter-0.9.5/highcharter/man/hc_add_series.ts.Rd | 36 highcharter-0.9.5/highcharter/man/hc_add_series.xts.Rd | 46 highcharter-0.9.5/highcharter/man/hc_add_series_list.Rd | 52 highcharter-0.9.5/highcharter/man/hc_add_series_map.Rd | 134 highcharter-0.9.5/highcharter/man/hc_add_theme.Rd | 56 highcharter-0.9.5/highcharter/man/hc_add_yAxis.Rd | 164 highcharter-0.9.5/highcharter/man/hc_annotations.Rd | 140 highcharter-0.9.5/highcharter/man/hc_boost.Rd | 256 - highcharter-0.9.5/highcharter/man/hc_caption.Rd | 80 highcharter-0.9.5/highcharter/man/hc_chart.Rd | 92 highcharter-0.9.5/highcharter/man/hc_colorAxis.Rd | 188 highcharter-0.9.5/highcharter/man/hc_colors.Rd | 60 highcharter-0.9.5/highcharter/man/hc_credits.Rd | 56 highcharter-0.9.5/highcharter/man/hc_drilldown.Rd | 168 highcharter-0.9.5/highcharter/man/hc_elementId.Rd | 42 highcharter-0.9.5/highcharter/man/hc_exporting.Rd | 54 highcharter-0.9.5/highcharter/man/hc_labels.Rd | 68 highcharter-0.9.5/highcharter/man/hc_legend.Rd | 80 highcharter-0.9.5/highcharter/man/hc_loading.Rd | 60 highcharter-0.9.5/highcharter/man/hc_mapNavigation.Rd | 50 highcharter-0.9.5/highcharter/man/hc_motion.Rd | 42 highcharter-0.9.5/highcharter/man/hc_navigator.Rd | 76 highcharter-0.9.5/highcharter/man/hc_pane.Rd | 184 highcharter-0.9.5/highcharter/man/hc_plotOptions.Rd | 80 highcharter-0.9.5/highcharter/man/hc_rangeSelector.Rd | 70 highcharter-0.9.5/highcharter/man/hc_responsive.Rd | 82 highcharter-0.9.5/highcharter/man/hc_rm_series.Rd | 32 highcharter-0.9.5/highcharter/man/hc_scrollbar.Rd | 86 highcharter-0.9.5/highcharter/man/hc_series.Rd | 64 highcharter-0.9.5/highcharter/man/hc_size.Rd | 48 highcharter-0.9.5/highcharter/man/hc_subtitle.Rd | 64 highcharter-0.9.5/highcharter/man/hc_theme.Rd | 110 highcharter-0.9.5/highcharter/man/hc_theme_538.Rd | 74 highcharter-0.9.5/highcharter/man/hc_theme_alone.Rd | 38 highcharter-0.9.5/highcharter/man/hc_theme_bloom.Rd | 38 highcharter-0.9.5/highcharter/man/hc_theme_chalk.Rd | 44 highcharter-0.9.5/highcharter/man/hc_theme_darkunica.Rd | 38 highcharter-0.9.5/highcharter/man/hc_theme_db.Rd | 38 highcharter-0.9.5/highcharter/man/hc_theme_economist.Rd | 38 highcharter-0.9.5/highcharter/man/hc_theme_elementary.Rd | 38 highcharter-0.9.5/highcharter/man/hc_theme_ffx.Rd | 38 highcharter-0.9.5/highcharter/man/hc_theme_flat.Rd | 42 highcharter-0.9.5/highcharter/man/hc_theme_flatdark.Rd | 38 highcharter-0.9.5/highcharter/man/hc_theme_ft.Rd | 38 highcharter-0.9.5/highcharter/man/hc_theme_ggplot2.Rd | 38 highcharter-0.9.5/highcharter/man/hc_theme_google.Rd | 38 highcharter-0.9.5/highcharter/man/hc_theme_gridlight.Rd | 38 highcharter-0.9.5/highcharter/man/hc_theme_handdrawn.Rd | 40 highcharter-0.9.5/highcharter/man/hc_theme_hcrt.Rd | 38 highcharter-0.9.5/highcharter/man/hc_theme_merge.Rd | 64 highcharter-0.9.5/highcharter/man/hc_theme_monokai.Rd | 38 highcharter-0.9.5/highcharter/man/hc_theme_null.Rd | 38 highcharter-0.9.5/highcharter/man/hc_theme_sandsignika.Rd | 38 highcharter-0.9.5/highcharter/man/hc_theme_smpl.Rd | 40 highcharter-0.9.5/highcharter/man/hc_theme_sparkline.Rd | 40 highcharter-0.9.5/highcharter/man/hc_theme_superheroes.Rd | 38 highcharter-0.9.5/highcharter/man/hc_theme_tufte.Rd | 56 highcharter-0.9.5/highcharter/man/hc_title.Rd | 60 highcharter-0.9.5/highcharter/man/hc_tooltip.Rd | 70 highcharter-0.9.5/highcharter/man/hc_xAxis.Rd | 92 highcharter-0.9.5/highcharter/man/hc_yAxis.Rd | 92 highcharter-0.9.5/highcharter/man/hc_zAxis.Rd | 110 highcharter-0.9.5/highcharter/man/hcaes.Rd | 44 highcharter-0.9.5/highcharter/man/hcaes_string.Rd | 52 highcharter-0.9.5/highcharter/man/hcboxplot.Rd | 54 highcharter-0.9.5/highcharter/man/hchart.Rd | 44 highcharter-0.9.5/highcharter/man/hchart.igraph.Rd |only highcharter-0.9.5/highcharter/man/hchart.survfit.Rd | 122 highcharter-0.9.5/highcharter/man/hciconarray.Rd | 48 highcharter-0.9.5/highcharter/man/hcmap.Rd | 122 highcharter-0.9.5/highcharter/man/hcparcords.Rd | 66 highcharter-0.9.5/highcharter/man/hcpxy_add_point.Rd | 78 highcharter-0.9.5/highcharter/man/hcpxy_add_series.Rd | 36 highcharter-0.9.5/highcharter/man/hcpxy_loading.Rd | 34 highcharter-0.9.5/highcharter/man/hcpxy_redraw.Rd | 28 highcharter-0.9.5/highcharter/man/hcpxy_remove_point.Rd | 48 highcharter-0.9.5/highcharter/man/hcpxy_remove_series.Rd | 38 highcharter-0.9.5/highcharter/man/hcpxy_set_data.Rd | 76 highcharter-0.9.5/highcharter/man/hcpxy_update.Rd | 32 highcharter-0.9.5/highcharter/man/hcpxy_update_point.Rd | 44 highcharter-0.9.5/highcharter/man/hcpxy_update_series.Rd | 40 highcharter-0.9.5/highcharter/man/hcspark.Rd | 56 highcharter-0.9.5/highcharter/man/hctreemap.Rd | 84 highcharter-0.9.5/highcharter/man/hctreemap2.Rd | 124 highcharter-0.9.5/highcharter/man/hex_to_rgba.Rd | 40 highcharter-0.9.5/highcharter/man/highchart.Rd | 84 highcharter-0.9.5/highcharter/man/highchart2.Rd | 106 highcharter-0.9.5/highcharter/man/highchartOutput.Rd | 48 highcharter-0.9.5/highcharter/man/highchartProxy.Rd | 36 highcharter-0.9.5/highcharter/man/highcharter-exports.Rd | 26 highcharter-0.9.5/highcharter/man/highcharter-package.Rd |only highcharter-0.9.5/highcharter/man/highcharts_demo.Rd | 30 highcharter-0.9.5/highcharter/man/hw_grid.Rd | 86 highcharter-0.9.5/highcharter/man/is.hexcolor.Rd | 40 highcharter-0.9.5/highcharter/man/is.highchart.Rd | 28 highcharter-0.9.5/highcharter/man/list_parse.Rd | 48 highcharter-0.9.5/highcharter/man/mountains_panorama.Rd | 58 highcharter-0.9.5/highcharter/man/mutate_mapping.Rd | 50 highcharter-0.9.5/highcharter/man/pokemon.Rd | 32 highcharter-0.9.5/highcharter/man/random_id.Rd | 32 highcharter-0.9.5/highcharter/man/renderHighchart.Rd | 48 highcharter-0.9.5/highcharter/man/stars.Rd | 60 highcharter-0.9.5/highcharter/man/str_to_id.Rd | 42 highcharter-0.9.5/highcharter/man/tooltip_chart.Rd | 194 highcharter-0.9.5/highcharter/man/tooltip_table.Rd | 68 highcharter-0.9.5/highcharter/man/unemployment.Rd | 56 highcharter-0.9.5/highcharter/man/uscountygeojson.Rd | 34 highcharter-0.9.5/highcharter/man/usgeojson.Rd | 34 highcharter-0.9.5/highcharter/man/vaccines.Rd | 58 highcharter-0.9.5/highcharter/man/weather.Rd | 56 highcharter-0.9.5/highcharter/man/worldgeojson.Rd | 34 194 files changed, 14895 insertions(+), 14846 deletions(-)
Title: Create Elegant Data Visualisations Using the Grammar of Graphics
Description: A system for 'declaratively' creating graphics, based on "The
Grammar of Graphics". You provide the data, tell 'ggplot2' how to map
variables to aesthetics, what graphical primitives to use, and it
takes care of the details.
Author: Hadley Wickham [aut] ,
Winston Chang [aut] ,
Lionel Henry [aut],
Thomas Lin Pedersen [aut, cre] ,
Kohske Takahashi [aut],
Claus Wilke [aut] ,
Kara Woo [aut] ,
Hiroaki Yutani [aut] ,
Dewey Dunnington [aut] ,
Teun van den Brand [aut] ,
Posit, PBC [cph, [...truncated...]
Maintainer: Thomas Lin Pedersen <thomas.pedersen@posit.co>
Diff between ggplot2 versions 4.0.2 dated 2026-02-03 and 4.0.3 dated 2026-04-22
DESCRIPTION | 6 +- MD5 | 40 +++++++-------- NEWS.md | 96 ++++++++++++++++++++----------------- R/facet-.R | 8 +-- R/geom-path.R | 4 - R/guide-.R | 2 R/guide-axis-theta.R | 6 +- R/guide-bins.R | 2 R/position-dodge.R | 4 - R/stat-boxplot.R | 7 +- R/stat-sum.R | 2 R/stat-ydensity.R | 4 - R/utilities.R | 13 ++++- inst/doc/extending-ggplot2.html | 49 +++++++++--------- inst/doc/ggplot2-in-packages.html | 3 - inst/doc/ggplot2-specs.html | 31 ++++++----- inst/doc/ggplot2.html | 19 +++---- inst/doc/profiling.html | 9 +-- man/geom_boxplot.Rd | 4 + tests/testthat/test-geom-boxplot.R | 29 +++++++++++ tests/testthat/test-plot.R | 2 21 files changed, 203 insertions(+), 137 deletions(-)
Title: A Modern and Flexible Web Client for R
Description: Bindings to 'libcurl' <https://curl.se/libcurl/> for performing fully
configurable HTTP/FTP requests where responses can be processed in memory, on
disk, or streaming via the callback or connection interfaces. Some knowledge
of 'libcurl' is recommended; for a more-user-friendly web client see the
'httr2' package which builds on this package with http specific tools and logic.
Author: Jeroen Ooms [aut, cre] ,
Hadley Wickham [ctb],
Posit Software, PBC [cph]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>
Diff between curl versions 7.0.0 dated 2025-08-19 and 7.1.0 dated 2026-04-22
DESCRIPTION | 6 - MD5 | 36 +++++------ NEWS | 6 + R/nslookup.R | 2 R/onload.R | 40 ++++++++++++ build/vignette.rds |binary inst/doc/intro.R | 2 inst/doc/intro.Rmd | 2 inst/doc/intro.html | 115 +++++++++++++++++++------------------ inst/doc/windows.html | 2 man/handle.Rd | 4 - man/handle_cookies.Rd | 2 man/nslookup.Rd | 2 src/download.c | 2 src/handle.c | 4 - src/ieproxy.c | 6 - tests/testthat/test-certificates.R | 2 tests/testthat/test-multi.R | 8 +- vignettes/intro.Rmd | 2 19 files changed, 147 insertions(+), 96 deletions(-)
Title: Univariate Time Series Forecasting
Description: An engine for univariate time series forecasting using
different regression models in an autoregressive way. The engine
provides an uniform interface for applying the different models.
Furthermore, it is extensible so that users can easily apply their
own regression models to univariate time series forecasting and
benefit from all the features of the engine, such as preprocessings
or estimation of forecast accuracy.
Author: Maria Pilar Frias-Bustamante [aut] ,
Francisco Martinez [aut, cre, cph]
Maintainer: Francisco Martinez <fmartin@ujaen.es>
Diff between utsf versions 1.3.2 dated 2026-04-14 and 1.3.3 dated 2026-04-22
DESCRIPTION | 11 MD5 | 18 - NEWS.md | 8 R/build_models.R | 6 R/main.R | 14 - inst/doc/utsf.R | 45 +--- inst/doc/utsf.Rmd | 84 ++----- inst/doc/utsf.html | 584 +++++++++++++++++++++++----------------------------- man/create_model.Rd | 6 vignettes/utsf.Rmd | 84 ++----- 10 files changed, 373 insertions(+), 487 deletions(-)
Title: Tools for Single Cell Genomics
Description: A toolkit for quality control, analysis, and exploration of single cell RNA sequencing data. 'Seurat' aims to enable users to identify and interpret sources of heterogeneity from single cell transcriptomic measurements, and to integrate diverse types of single cell data. See Satija R, Farrell J, Gennert D, et al (2015) <doi:10.1038/nbt.3192>, Macosko E, Basu A, Satija R, et al (2015) <doi:10.1016/j.cell.2015.05.002>, Stuart T, Butler A, et al (2019) <doi:10.1016/j.cell.2019.05.031>, and Hao, Hao, et al (2020) <doi:10.1101/2020.10.12.335331> for more details.
Author: Andrew Butler [ctb] ,
Saket Choudhary [ctb] ,
David Collins [ctb] ,
Charlotte Darby [ctb] ,
Jeff Farrell [ctb],
Isabella Grabski [ctb] ,
Christoph Hafemeister [ctb] ,
Yuhan Hao [ctb] ,
Austin Hartman [ctb] ,
Paul Hoffman [ctb] ,
Jaison Jain [ctb] ,
L [...truncated...]
Maintainer: Rahul Satija <seurat@nygenome.org>
Diff between Seurat versions 5.4.0 dated 2025-12-14 and 5.5.0 dated 2026-04-22
DESCRIPTION | 8 MD5 | 74 +- NAMESPACE | 6 NEWS.md | 40 + R/clustering.R | 26 R/convenience.R | 4 R/differential_expression.R | 188 +++-- R/dimensional_reduction.R | 8 R/integration.R | 2 R/integration5.R | 2 R/mixscape.R | 8 R/objects.R | 10 R/preprocessing.R | 129 +++ R/sketching.R | 2 R/utilities.R | 54 + R/visualization.R | 701 ++++++++++++-------- R/zzz.R | 3 README.md | 20 build/Seurat.pdf |binary build/stage23.rdb |binary man/DimHeatmap.Rd | 13 man/ElbowPlot.Rd | 25 man/FeaturePlot.Rd | 3 man/GetTissueCoordinates.Rd | 2 man/HarmonyIntegration.Rd | 2 man/Load10X_Spatial.Rd | 2 man/ScaleData.Rd | 3 man/Seurat-package.Rd | 3 man/SingleSpatialPlot.Rd | 9 man/SpatialPlot.Rd | 6 src/RModularityOptimizer.cpp | 8 tests/testthat/test_differential_expression.R | 800 ++++++++++++----------- tests/testthat/test_integratedata.R | 51 - tests/testthat/test_integration.R | 870 ++++++++++++-------------- tests/testthat/test_integration5.R | 346 +++++----- tests/testthat/test_preprocessing.R | 407 ++++++------ tests/testthat/test_transferdata.R | 159 ++-- tests/testthat/test_visualization.R | 30 38 files changed, 2255 insertions(+), 1769 deletions(-)
Title: Reporting Tables
Description: Reporting tables often have structure that goes beyond simple
rectangular data. The 'rtables' package provides a framework for
declaring complex multi-level tabulations and then applying them to
data. This framework models both tabulation and the resulting tables
as hierarchical, tree-like objects which support sibling sub-tables,
arbitrary splitting or grouping of data in row and column dimensions,
cells containing multiple values, and the concept of contextual
summary computations. A convenient pipe-able interface is provided for
declaring table layouts and the corresponding computations, and then
applying them to data.
Author: Gabriel Becker [aut] ,
Adrian Waddell [aut],
Daniel Sabanes Bove [ctb],
Maximilian Mordig [ctb],
Davide Garolini [aut] ,
Emily de la Rua [aut] ,
Abinaya Yogasekaram [ctb] ,
Joe Zhu [aut, cre] ,
F. Hoffmann-La Roche AG [cph, fnd]
Maintainer: Joe Zhu <joe.zhu@roche.com>
Diff between rtables versions 0.6.15 dated 2025-12-14 and 0.6.16 dated 2026-04-22
DESCRIPTION | 22 MD5 | 153 NAMESPACE | 668 +- NEWS.md | 1212 ++-- R/custom_split_funs.R | 1412 ++-- R/default_split_funs.R | 1414 ++-- R/make_split_fun.R | 961 +-- R/make_subset_expr.R | 629 +- R/tt_paginate.R | 2065 +++---- build/vignette.rds |binary inst/WORDLIST | 89 inst/doc/advanced_usage.R | 342 - inst/doc/advanced_usage.html | 1282 ++-- inst/doc/ard_how_to.R | 230 inst/doc/ard_how_to.html | 1792 +++--- inst/doc/baseline.R | 140 inst/doc/baseline.html | 964 +-- inst/doc/clinical_trials.R | 1424 ++-- inst/doc/clinical_trials.html | 4730 ++++++++-------- inst/doc/col_counts.R | 180 inst/doc/col_counts.html | 1174 ++-- inst/doc/custom_appearance.R | 626 +- inst/doc/custom_appearance.html | 2708 ++++----- inst/doc/example_analysis_coxreg.R | 604 +- inst/doc/example_analysis_coxreg.html | 1740 +++--- inst/doc/exploratory_analysis.R | 240 inst/doc/exploratory_analysis.html | 1578 ++--- inst/doc/format_precedence.R | 406 - inst/doc/format_precedence.html | 1636 ++--- inst/doc/guided_intermediate.R | 32 inst/doc/guided_intermediate.html | 3204 +++++------ inst/doc/guided_intermediate_afun_reqs.R | 408 - inst/doc/guided_intermediate_afun_reqs.html | 4502 +++++++-------- inst/doc/guided_intermediate_split_reqs.R | 372 - inst/doc/guided_intermediate_split_reqs.html | 4626 ++++++++-------- inst/doc/guided_intermediate_translating_shells.R | 976 +-- inst/doc/guided_intermediate_translating_shells.html | 5444 +++++++++---------- inst/doc/introspecting_tables.R | 152 inst/doc/introspecting_tables.html | 1348 ++-- inst/doc/manual_table_construction.R | 48 inst/doc/manual_table_construction.html | 932 +-- inst/doc/pathing.R | 362 - inst/doc/pathing.Rmd | 1034 +-- inst/doc/pathing.html | 2608 ++++----- inst/doc/rtables.R | 312 - inst/doc/rtables.html | 1614 ++--- inst/doc/sorting_pruning.R | 364 - inst/doc/sorting_pruning.html | 2662 ++++----- inst/doc/split_functions.R | 386 - inst/doc/split_functions.html | 1856 +++--- inst/doc/subsetting_tables.R | 226 inst/doc/subsetting_tables.html | 1602 ++--- inst/doc/tabulation_concepts.R | 564 - inst/doc/tabulation_concepts.html | 2344 ++++---- inst/doc/tabulation_dplyr.R | 292 - inst/doc/tabulation_dplyr.html | 1394 ++-- inst/doc/title_footer.R | 282 inst/doc/title_footer.html | 1838 +++--- man/add_combo_facet.Rd | 115 man/add_overall_level.Rd | 270 man/drop_facet_levels.Rd | 59 man/make_split_fun.Rd | 267 man/make_split_result.Rd | 164 man/make_subset_expr.Rd |only man/restrict_facets.Rd |only man/rtables-package.Rd | 80 man/trim_levels_in_facets.Rd | 55 tests/testthat/test-accessors.R | 1260 ++-- tests/testthat/test-custom_split_funs.R | 597 +- tests/testthat/test-exporters.R | 546 - tests/testthat/test-formatting.R | 426 - tests/testthat/test-header-footer.R | 334 - tests/testthat/test-indent-mod.R | 472 - tests/testthat/test-make-afun.R | 956 +-- tests/testthat/test-make-subset_expr.R |only tests/testthat/test-pagination.R | 1192 ++-- tests/testthat/test-regressions.R | 1246 ++-- tests/testthat/test-sort-prune.R | 724 +- vignettes/pathing.Rmd | 1034 +-- 79 files changed, 41226 insertions(+), 40776 deletions(-)
Title: Detection of Chromosomal Aneuploidies in Ancient DNA Studies
Description: An R implementation of ChASM (Chromosomal Aneuploidy Screening Methodology): a statistically rigorous Bayesian approach for screening data sets for autosomal and sex chromosomal aneuploidies. This package takes as input the number of (deduplicated) reads mapping to chromosomes 1-22 and the X and Y chromosomes, and models these using a Dirichlet-multinomial distribution. From this, This package returns posterior probabilities of sex chromosomal karyotypes (XX, XY, XXY, XYY, XXX and X) and full autosomal aneuploidies (trisomy 13, trisomy 18 and trisomy 21). This package also returns two diagnostic statistics: (i) a posterior probability addressing whether contamination between XX and XY may explain the observed sex chromosomal aneuploidy, and (ii) a chi-squared statistic measuring whether the observed read counts are too divergent from the underlying distribution (and may represent abnormal sequencing/quality issues).
Author: Adam B. Rohrlach [aut, cph] ,
Jono Tuke [aut, cre] ,
Wolfgang Haak [aut]
Maintainer: Jono Tuke <simon.tuke@adelaide.edu.au>
Diff between RChASM versions 1.0.0 dated 2026-03-03 and 1.0.1 dated 2026-04-22
DESCRIPTION | 10 +++-- MD5 | 13 ++++--- NEWS.md | 4 ++ inst/doc/example_analysis.R | 10 +---- inst/doc/example_analysis.Rmd | 60 +++++++++++++++++++---------------- inst/doc/example_analysis.html | 69 ++++++++++++++++++++--------------------- inst/extdata/CHASM_input.sh |only vignettes/example_analysis.Rmd | 60 +++++++++++++++++++---------------- 8 files changed, 119 insertions(+), 107 deletions(-)
Title: Efficient Serialization of R Objects
Description: Streamlines and accelerates the process of saving and loading R objects, improving speed and compression compared to other methods. The package provides two compression formats: the 'qs2' format, which uses R serialization via the C API while optimizing compression and disk I/O, and the 'qdata' format, featuring custom serialization for slightly faster performance and better compression. Additionally, the 'qs2' format can be directly converted to the standard 'RDS' format, ensuring long-term compatibility with future versions of R.
Author: Travers Ching [aut, cre, cph],
Yann Collet [ctb, cph] ,
Facebook, Inc. [cph] ,
Reichardt Tino [ctb, cph] ,
Skibinski Przemyslaw [ctb, cph] ,
Mori Yuta [ctb, cph] ,
Francesc Alted [ctb, cph]
Maintainer: Travers Ching <traversc@gmail.com>
Diff between qs2 versions 0.1.7 dated 2026-01-20 and 0.2.0 dated 2026-04-22
qs2-0.1.7/qs2/src/io |only qs2-0.1.7/qs2/src/qd_constants.h |only qs2-0.1.7/qs2/src/qs_unwind_protect.h |only qs2-0.1.7/qs2/src/xxhash |only qs2-0.1.7/qs2/tests/correctness_testing.R |only qs2-0.2.0/qs2/ChangeLog | 19 qs2-0.2.0/qs2/DESCRIPTION | 14 qs2-0.2.0/qs2/MD5 | 147 qs2-0.2.0/qs2/NAMESPACE | 6 qs2-0.2.0/qs2/R/RcppExports.R | 20 qs2-0.2.0/qs2/R/generate_test_data.R |only qs2-0.2.0/qs2/R/qopt.R | 9 qs2-0.2.0/qs2/R/qs_cache.R |only qs2-0.2.0/qs2/R/qs_to_rds.R | 68 qs2-0.2.0/qs2/R/qx_functions.R | 17 qs2-0.2.0/qs2/R/zstd_file_functions.R | 19 qs2-0.2.0/qs2/README.md | 131 qs2-0.2.0/qs2/configure | 60 qs2-0.2.0/qs2/configure.ac | 33 qs2-0.2.0/qs2/inst/doc/vignette.R | 4 qs2-0.2.0/qs2/inst/doc/vignette.html | 241 - qs2-0.2.0/qs2/inst/doc/vignette.rmd | 119 qs2-0.2.0/qs2/inst/include/qdata-cpp |only qs2-0.2.0/qs2/inst/include/qdata_cpp_external.h |only qs2-0.2.0/qs2/inst/include/qs2_external.h | 88 qs2-0.2.0/qs2/man/generate_test_data.Rd |only qs2-0.2.0/qs2/man/qd_deserialize.Rd | 4 qs2-0.2.0/qs2/man/qd_read.Rd | 4 qs2-0.2.0/qs2/man/qd_save.Rd | 2 qs2-0.2.0/qs2/man/qd_serialize.Rd | 2 qs2-0.2.0/qs2/man/qopt.Rd | 9 qs2-0.2.0/qs2/man/qs_cache.Rd |only qs2-0.2.0/qs2/man/qs_deserialize.Rd | 2 qs2-0.2.0/qs2/man/qs_read.Rd | 2 qs2-0.2.0/qs2/man/qs_save.Rd | 2 qs2-0.2.0/qs2/man/qs_serialize.Rd | 2 qs2-0.2.0/qs2/man/rds_to_qs.Rd | 10 qs2-0.2.0/qs2/man/zstd_compress_bound.Rd | 11 qs2-0.2.0/qs2/man/zstd_file_functions.Rd | 6 qs2-0.2.0/qs2/man/zstd_in_out.Rd | 15 qs2-0.2.0/qs2/src/Makevars.in | 4 qs2-0.2.0/qs2/src/Makevars.win | 9 qs2-0.2.0/qs2/src/RcppExports.cpp | 57 qs2-0.2.0/qs2/src/ZSTD/zstd.c | 4391 ++++++++++++++--------- qs2-0.2.0/qs2/src/ZSTD/zstd.h | 366 + qs2-0.2.0/qs2/src/ZSTD/zstd_errors.h |only qs2-0.2.0/qs2/src/ascii_encoding/base85.h | 3 qs2-0.2.0/qs2/src/ascii_encoding/base91.h | 25 qs2-0.2.0/qs2/src/qd_deserializer.h | 231 - qs2-0.2.0/qs2/src/qd_serializer.h | 102 qs2-0.2.0/qs2/src/qdata_cpp_external_api.h |only qs2-0.2.0/qs2/src/qs_deserializer.h | 2 qs2-0.2.0/qs2/src/qs_serializer.h | 2 qs2-0.2.0/qs2/src/qx_dump.h | 21 qs2-0.2.0/qs2/src/qx_file_headers.h | 210 - qs2-0.2.0/qs2/src/qx_functions.cpp | 522 +- qs2-0.2.0/qs2/src/qx_unwind_protect.h |only qs2-0.2.0/qs2/src/r_error_policy.h |only qs2-0.2.0/qs2/src/zstd_file_functions.h | 350 + qs2-0.2.0/qs2/tests/00_smoke_testing.R |only qs2-0.2.0/qs2/tests/qdata_cpp_external_testing.R |only qs2-0.2.0/qs2/tests/utility_testing.R | 38 qs2-0.2.0/qs2/tests/zz_correctness_testing.R |only qs2-0.2.0/qs2/vignettes/vignette.rmd | 119 64 files changed, 4610 insertions(+), 2908 deletions(-)
Title: Tools for Building OLS Regression Models
Description: Tools designed to make it easier for users, particularly beginner/intermediate R users
to build ordinary least squares regression models. Includes comprehensive regression output,
heteroskedasticity tests, collinearity diagnostics, residual diagnostics, measures of influence,
model fit assessment and variable selection procedures.
Author: Aravind Hebbali [aut, cre]
Maintainer: Aravind Hebbali <hebbali.aravind@gmail.com>
Diff between olsrr versions 0.6.1 dated 2024-11-06 and 0.7.0 dated 2026-04-22
DESCRIPTION | 8 LICENSE | 2 MD5 | 220 +++++---- NAMESPACE | 29 + NEWS.md | 20 R/ols-anova.R |only R/ols-best-subsets-regression.R | 20 R/ols-model-info.R |only R/ols-model-performance.R |only R/ols-step.R | 23 R/ols-stepaic-backward-regression.R | 38 + R/ols-stepaic-both-regression.R | 36 + R/ols-stepaic-forward-regression.R | 38 + R/ols-stepwise-backward-regression.R | 20 R/ols-stepwise-forward-regression.R | 14 R/ols-stepwise-hierarchical.R | 41 + R/ols-stepwise-regression.R | 15 R/ols-stepwise-utils.R | 9 R/output.R | 100 ++++ R/todo.R |only R/utils.R | 78 --- README.md | 4 build/vignette.rds |binary inst/doc/heteroskedasticity.html | 5 inst/doc/influence_measures.html | 5 inst/doc/intro.html | 5 inst/doc/regression_diagnostics.html | 9 inst/doc/residual_diagnostics.html | 7 inst/doc/variable_selection.html | 5 man/ols_anova.Rd |only man/ols_compare_model_performance.Rd |only man/ols_count_obs.Rd |only man/ols_count_parameters.Rd |only man/ols_get_call.Rd |only man/ols_get_data.Rd |only man/ols_get_deviance.Rd |only man/ols_get_df.Rd |only man/ols_get_formula.Rd |only man/ols_get_interaction_terms.Rd |only man/ols_get_intercept.Rd |only man/ols_get_model_matrix.Rd |only man/ols_get_parameters.Rd |only man/ols_get_predicted.Rd |only man/ols_get_predictors.Rd |only man/ols_get_residuals.Rd |only man/ols_get_response.Rd |only man/ols_get_sigma.Rd |only man/ols_get_variables.Rd |only man/ols_get_vcov.Rd |only man/ols_has_intercept.Rd |only man/ols_model_info.Rd |only man/ols_model_performance.Rd |only man/ols_step_backward_adj_r2.Rd | 6 man/ols_step_backward_aic.Rd | 8 man/ols_step_backward_p.Rd | 7 man/ols_step_backward_r2.Rd | 6 man/ols_step_backward_sbc.Rd | 6 man/ols_step_backward_sbic.Rd | 6 man/ols_step_both_adj_r2.Rd | 6 man/ols_step_both_aic.Rd | 6 man/ols_step_both_p.Rd | 7 man/ols_step_both_r2.Rd | 6 man/ols_step_both_sbc.Rd | 6 man/ols_step_both_sbic.Rd | 6 man/ols_step_forward_adj_r2.Rd | 6 man/ols_step_forward_aic.Rd | 6 man/ols_step_forward_p.Rd | 6 man/ols_step_forward_r2.Rd | 6 man/ols_step_forward_sbc.Rd | 6 man/ols_step_forward_sbic.Rd | 6 tests/testthat/_snaps/anova.md |only tests/testthat/_snaps/model-performance.md |only tests/testthat/_snaps/step-backward-output.md | 230 +++++++++ tests/testthat/_snaps/step-forward-output.md | 241 ++++++++++ tests/testthat/_snaps/stepwise-output.md | 221 +++++++++ tests/testthat/_snaps/visual/allplot-1.svg | 4 tests/testthat/_snaps/visual/allplot-2.svg | 4 tests/testthat/_snaps/visual/allplot-3.svg | 4 tests/testthat/_snaps/visual/allplot-4.svg | 4 tests/testthat/_snaps/visual/allplot-5.svg | 4 tests/testthat/_snaps/visual/allplot-6.svg | 4 tests/testthat/_snaps/visual/bestplot-1.svg | 66 +- tests/testthat/_snaps/visual/bestplot-2.svg | 66 +- tests/testthat/_snaps/visual/bestplot-3.svg | 70 +- tests/testthat/_snaps/visual/bestplot-4.svg | 72 +- tests/testthat/_snaps/visual/bestplot-5.svg | 66 +- tests/testthat/_snaps/visual/bestplot-6.svg | 66 +- tests/testthat/_snaps/visual/cooks-d-bar-chart-threshold.svg | 2 tests/testthat/_snaps/visual/cooks-d-bar-chart.svg | 2 tests/testthat/_snaps/visual/cooks-d-bar-plot-threshold.svg | 2 tests/testthat/_snaps/visual/cooks-d-bar-plot-type-2.svg | 2 tests/testthat/_snaps/visual/cooks-d-bar-plot-type-3.svg | 2 tests/testthat/_snaps/visual/cooks-d-bar-plot-type-4.svg | 2 tests/testthat/_snaps/visual/cooks-d-bar-plot-type-5.svg | 2 tests/testthat/_snaps/visual/cooks-d-bar-plot.svg | 2 tests/testthat/_snaps/visual/dfbetas-1.svg | 2 tests/testthat/_snaps/visual/dfbetas-2.svg | 2 tests/testthat/_snaps/visual/dfbetas-3.svg | 2 tests/testthat/_snaps/visual/dfbetas-4.svg | 2 tests/testthat/_snaps/visual/dfbetas-5.svg | 2 tests/testthat/_snaps/visual/dffits-cutoff-plot.svg | 2 tests/testthat/_snaps/visual/dffits-plot.svg | 2 tests/testthat/_snaps/visual/diag-2.svg | 2 tests/testthat/_snaps/visual/diag-3.svg | 4 tests/testthat/_snaps/visual/diag-5.svg | 2 tests/testthat/_snaps/visual/diag-6.svg | 2 tests/testthat/_snaps/visual/diag-9.svg | 22 tests/testthat/_snaps/visual/dsrvsp-plot.svg | 2 tests/testthat/_snaps/visual/resp-viz-histogram.svg | 16 tests/testthat/_snaps/visual/rslev-1.svg | 4 tests/testthat/_snaps/visual/sbic-both-direction-regression-plot-details.svg |only tests/testthat/_snaps/visual/sbic-both-direction-regression-plot.svg |only tests/testthat/_snaps/visual/stanres-1.svg | 2 tests/testthat/_snaps/visual/studres-1.svg | 2 tests/testthat/test-anova.R |only tests/testthat/test-best-subsets.R | 6 tests/testthat/test-model-info.R |only tests/testthat/test-model-performance.R |only tests/testthat/test-step-backward-output.R | 7 tests/testthat/test-step-backward.R | 14 tests/testthat/test-step-forward-output.R | 7 tests/testthat/test-step-forward.R | 14 tests/testthat/test-stepaic-b.R | 9 tests/testthat/test-stepaic-both.R | 8 tests/testthat/test-stepaic-f.R | 7 tests/testthat/test-stepwise-output.R | 7 tests/testthat/test-stepwise.R | 7 tests/testthat/test-visual.R | 4 128 files changed, 1644 insertions(+), 519 deletions(-)
Title: Access and Analyse 'VALD' Data via Our External 'APIs'
Description: Provides helper functions and wrappers to simplify authentication,
data retrieval, and result processing from the 'VALD' 'APIs'.
Designed to streamline integration for analysts and researchers working
with 'VALD's external 'APIs'.
For further documentation on integrating with 'VALD' 'APIs', see:
<https://support.vald.com/hc/en-au/articles/23415335574553-How-to-integrate-with-VALD-APIs>.
For a step-by-step guide to using this package, see:
<https://support.vald.com/hc/en-au/articles/48730811824281-A-guide-to-using-the-valdr-R-package>.
Author: Kieran Harrison [aut, cre],
VALD Support [ctb],
VALD [cph]
Maintainer: Kieran Harrison <k.harrison@vald.com>
Diff between valdr versions 2.2.0 dated 2026-02-25 and 3.0.0 dated 2026-04-22
DESCRIPTION | 6 MD5 | 30 +++- NAMESPACE | 3 R/config.R | 14 +- R/forcedecks_tests.R | 17 -- R/forcedecks_trials.R | 5 R/forceframe_reps_by_id.R |only R/session.R | 75 ++++++++++ R/smartspeed_tests.R |only R/utils.R | 219 ++++++++++++++++++++++++++++++++ man/dot-build_forcedecks_df.Rd |only man/dot-build_forceframe_reps_df.Rd |only man/dot-build_smartspeed_df.Rd |only man/dot-extract_nested.Rd |only man/dot-extract_nested_json.Rd |only man/get_forceframe_repetitions_by_id.Rd |only man/get_forceframe_reps_by_id.Rd |only man/get_forceframe_tests_only.Rd | 2 man/get_nordbord_tests_only.Rd | 2 man/get_smartspeed_data.Rd |only man/get_smartspeed_tests.Rd |only man/get_smartspeed_tests_only.Rd |only 22 files changed, 335 insertions(+), 38 deletions(-)
Title: Statistical Inference for Unsupervised Learning
Description: Test for association between the observed data and their estimated latent variables. The jackstraw package provides a resampling strategy and testing scheme to estimate statistical significance of association between the observed data and their latent variables. Depending on the data type and the analysis aim, the latent variables may be estimated by principal component analysis (PCA), factor analysis (FA), K-means clustering, and related unsupervised learning algorithms. The jackstraw methods learn over-fitting characteristics inherent in this circular analysis, where the observed data are used to estimate the latent variables and used again to test against that estimated latent variables. When latent variables are estimated by PCA, the jackstraw enables statistical testing for association between observed variables and latent variables, as estimated by low-dimensional principal components (PCs). This essentially leads to identifying variables that are significantly associated with PC [...truncated...]
Author: Neo Christopher Chung [aut, cre] ,
John D. Storey [aut] ,
Wei Hao [aut],
Alejandro Ochoa [aut]
Maintainer: Neo Christopher Chung <nchchung@gmail.com>
This is a re-admission after prior archival of version 1.3.17 dated 2024-09-16
Diff between jackstraw versions 1.3.17 dated 2024-09-16 and 1.3.21 dated 2026-04-22
DESCRIPTION | 20 +++---- MD5 | 36 +++++++------ NAMESPACE | 2 NEWS.md | 24 ++++++++ R/jackstraw_lfa.R | 13 ++++ R/ncp_est.R |only R/pvals_nc_chisq.R |only README.md | 3 - build/partial.rdb |binary man/Jurkat293T.Rd | 2 man/jackstraw_cluster.Rd | 4 - man/jackstraw_irlba.Rd | 2 man/jackstraw_kmeans.Rd | 2 man/jackstraw_kmeanspp.Rd | 2 man/jackstraw_lfa.Rd | 13 ++++ man/jackstraw_pam.Rd | 2 man/jackstraw_pca.Rd | 2 man/jackstraw_rpca.Rd | 2 man/ncp_est.Rd |only man/pvals_nc_chisq.Rd |only tests/testthat/test-jackstraw.R | 108 +++++++++++++++++++++++++++++++++++++--- 21 files changed, 189 insertions(+), 48 deletions(-)
Title: Quality Evaluation of Core Collections
Description: Implements various quality evaluation statistics to assess the
value of plant germplasm core collections using qualitative and
quantitative phenotypic trait data according to Odong et al. (2015)
<doi:10.1007/s00122-012-1971-y>.
Author: J. Aravind [aut, cre] ,
Vikender Kaur [aut] ,
Dhammaprakash Pandhari Wankhede [aut] ,
Joghee Nanjundan [aut] ,
ICAR-NBGPR [cph]
Maintainer: J. Aravind <j.aravind@icar.org.in>
Diff between EvaluateCore versions 0.1.4 dated 2025-12-18 and 0.1.5 dated 2026-04-22
DESCRIPTION | 12 MD5 | 78 ++-- NEWS.md | 8 R/EvaluateCore-deprecated.R | 2 R/bar.evaluate.core.R | 2 R/box.evaluate.core.R | 2 R/cassava_CC.R | 2 R/cassava_EC.R | 2 R/checks.evaluate.core.R | 2 R/chisquare.evalueate.core.R | 2 R/corr.evaluate.core.R | 2 R/coverage.evaluate.core.R | 2 R/cr.evaluate.core.R | 2 R/dist.evaluate.core.R | 2 R/diversity.evaluate.core.R | 154 ++++++--- R/freqdist.evaluate.core.R | 2 R/globals.R | 2 R/iqr.evaluate.core.R | 2 R/levene.evaluate.core.R | 2 R/pca.evaluate.core.R | 2 R/pdfdist.evaluate.core.R | 2 R/percentdiff.evaluate.core.R | 5 R/qq.evaluate.core.R | 2 R/rpr.evaluate.core.R | 2 R/scv.evaluate.core.R | 2 R/shannon.evaluate.core.R | 2 R/signtest.evaluate.core.R | 2 R/snk.evaluate.core.R | 2 R/ttest.evaluate.core.R | 2 R/vpf.evaluate.core.R | 2 R/vr.evaluate.core.R | 2 R/wilcox.evaluate.core.R | 2 R/xtra.R | 2 README.md | 107 ++---- build/partial.rdb |binary build/stage23.rdb |binary inst/CITATION | 4 inst/REFERENCES.bib | 610 +++++++++++++++++++++------------------ man/diversity.evaluate.core.Rd | 100 ++++-- man/percentdiff.evaluate.core.Rd | 3 40 files changed, 633 insertions(+), 504 deletions(-)
Title: Discover and Call 'Bund.dev' APIs
Description: Provides a registry of APIs listed on <https://bund.dev> and a core
'OpenAPI' client layer to explore specs and perform requests. Adapter helpers
return tidy data frames for supported APIs, with optional response caching and
rate limiting guidance.
Author: Michael Buecker [aut, cre]
Maintainer: Michael Buecker <michael.buecker@fh-muenster.de>
This is a re-admission after prior archival of version 0.2.1 dated 2026-02-16
Diff between bunddev versions 0.2.1 dated 2026-02-16 and 0.2.3 dated 2026-04-22
DESCRIPTION | 10 MD5 | 533 ++++++++++---------- NAMESPACE | 8 NEWS.md | 37 + R/adapt_abfallnavi.R | 180 +++++-- R/adapt_ausbildungssuche.R | 88 ++- R/adapt_autobahn.R | 417 +++++++++++++--- R/adapt_bewerberboerse.R | 116 +++- R/adapt_bundeshaushalt.R | 55 +- R/adapt_bundesrat.R | 202 +++++-- R/adapt_bundestag.R | 144 ++++- R/adapt_bundestag_lobbyregister.R | 35 + R/adapt_dashboard_deutschland.R | 103 +++- R/adapt_ddb.R | 97 +++ R/adapt_destatis.R | 94 ++- R/adapt_deutschlandatlas.R | 42 + R/adapt_diga.R | 264 ++++++++-- R/adapt_dip_bundestag.R | 638 +++++++++++++++++++++---- R/adapt_dwd.R | 231 ++++++--- R/adapt_eco_visio.R | 35 + R/adapt_feiertage.R | 21 R/adapt_handelsregister.R | 38 + R/adapt_hilfsmittel.R | 285 +++++++++-- R/adapt_hochwasserzentralen.R | 96 ++- R/adapt_jobsuche.R | 131 ++++- R/adapt_klinikatlas.R |only R/adapt_ladestationen.R | 47 + R/adapt_lebensmittelwarnung.R | 44 + R/adapt_luftqualitaet.R | 278 +++++++--- R/adapt_marktstammdaten.R | 303 +++++++++-- R/adapt_mudab.R | 251 +++++++-- R/adapt_nina.R | 347 +++++++++---- R/adapt_pegel_online.R | 178 +++++- R/adapt_pflanzenschutzmittelzulassung.R | 141 ++++- R/adapt_regionalatlas.R | 31 + R/adapt_smard.R | 54 +- R/adapt_tagesschau.R | 123 +++- R/adapt_travelwarning.R | 208 ++++++-- R/bunddev_endpoints.R | 1 R/core_auth.R | 17 R/core_cache.R | 38 + R/core_call.R | 18 R/core_openapi.R | 30 + R/core_registry.R | 24 R/core_throttle.R | 14 R/core_tidy.R | 7 R/core_time.R | 2 README.md | 8 build/vignette.rds |binary inst/doc/getting-started.html | 4 inst/registry/endpoints.yml | 32 + inst/registry/registry.yml | 9 man/abfallnavi_fraktionen.Rd | 27 - man/abfallnavi_fraktionen_hausnummern.Rd | 27 - man/abfallnavi_fraktionen_strassen.Rd | 27 - man/abfallnavi_hausnummern.Rd | 27 - man/abfallnavi_kalender_download.Rd | 27 - man/abfallnavi_ort.Rd | 25 man/abfallnavi_orte.Rd | 27 - man/abfallnavi_strassen.Rd | 30 + man/abfallnavi_termine_hausnummern.Rd | 29 - man/abfallnavi_termine_strassen.Rd | 29 - man/adapt_klinikatlas.Rd |only man/ausbildungssuche_details.Rd | 16 man/ausbildungssuche_search.Rd | 86 ++- man/autobahn_charging_station_details.Rd | 36 + man/autobahn_charging_stations.Rd | 56 +- man/autobahn_closure_details.Rd | 35 + man/autobahn_closures.Rd | 56 +- man/autobahn_parking_lorries.Rd | 56 +- man/autobahn_parking_lorry_details.Rd | 36 + man/autobahn_roads.Rd | 22 man/autobahn_roadwork_details.Rd | 35 + man/autobahn_roadworks.Rd | 56 +- man/autobahn_warning_details.Rd | 35 + man/autobahn_warnings.Rd | 56 +- man/autobahn_webcam_details.Rd | 35 + man/autobahn_webcams.Rd | 56 +- man/bewerberboerse_details.Rd | 51 + man/bewerberboerse_search.Rd | 66 ++ man/bunddev_auth_get.Rd | 7 man/bunddev_auth_set.Rd | 16 man/bunddev_cache_dir.Rd | 19 man/bunddev_call.Rd | 30 + man/bunddev_call_tidy.Rd | 19 man/bunddev_endpoints.Rd | 33 + man/bunddev_info.Rd | 8 man/bunddev_list.Rd | 9 man/bunddev_ms_to_posix.Rd | 14 man/bunddev_parameter_values.Rd | 16 man/bunddev_parameters.Rd | 25 man/bunddev_parameters_for.Rd | 16 man/bunddev_rate_limit_get.Rd | 10 man/bunddev_rate_limit_set.Rd | 10 man/bunddev_registry.Rd | 18 man/bunddev_search.Rd | 9 man/bunddev_spec.Rd | 18 man/bunddev_spec_path.Rd | 15 man/bunddev_timestamp_to_ms.Rd | 14 man/bundeshaushalt_budget_data.Rd | 65 +- man/bundesrat_aktuelles.Rd | 32 + man/bundesrat_mitglieder.Rd | 32 + man/bundesrat_plenum_aktuelle_sitzung.Rd | 32 + man/bundesrat_plenum_chronologisch.Rd | 32 + man/bundesrat_plenum_kompakt.Rd | 32 + man/bundesrat_plenum_naechste_sitzungen.Rd | 32 + man/bundesrat_praesidium.Rd | 32 + man/bundesrat_startlist.Rd | 34 + man/bundesrat_stimmverteilung.Rd | 32 + man/bundesrat_termine.Rd | 32 + man/bundestag_article.Rd | 28 - man/bundestag_ausschuesse.Rd | 28 - man/bundestag_ausschuss.Rd | 28 - man/bundestag_conferences.Rd | 28 - man/bundestag_lobbyregister_search.Rd | 35 + man/bundestag_mdb_bio.Rd | 28 - man/bundestag_mdb_index.Rd | 28 - man/bundestag_speaker.Rd | 28 - man/bundestag_video_feed.Rd | 28 - man/dashboard_deutschland_geo.Rd | 41 + man/dashboard_deutschland_get.Rd | 51 + man/dashboard_deutschland_indicators.Rd | 26 - man/ddb_institution_sectors.Rd | 20 man/ddb_institutions.Rd | 50 + man/ddb_search.Rd | 49 + man/destatis_catalogue_cubes.Rd | 41 + man/destatis_catalogue_tables.Rd | 41 + man/destatis_data_cube.Rd | 39 + man/destatis_data_table.Rd | 39 + man/deutschlandatlas_query.Rd | 50 + man/diga_catalog_entries.Rd | 52 +- man/diga_charge_item_definitions.Rd | 54 +- man/diga_device_definitions.Rd | 53 +- man/diga_organizations.Rd | 52 +- man/diga_questionnaire_responses.Rd | 51 + man/diga_questionnaires.Rd | 52 +- man/dip_bundestag_aktivitaet.Rd | 54 +- man/dip_bundestag_aktivitaet_list.Rd | 72 ++ man/dip_bundestag_drucksache.Rd | 60 ++ man/dip_bundestag_drucksache_list.Rd | 78 ++- man/dip_bundestag_drucksache_text.Rd | 43 + man/dip_bundestag_drucksache_text_list.Rd | 79 ++- man/dip_bundestag_person.Rd | 52 +- man/dip_bundestag_person_list.Rd | 70 ++ man/dip_bundestag_plenarprotokoll.Rd | 55 +- man/dip_bundestag_plenarprotokoll_list.Rd | 73 ++ man/dip_bundestag_plenarprotokoll_text.Rd | 43 + man/dip_bundestag_plenarprotokoll_text_list.Rd | 74 ++ man/dip_bundestag_vorgang.Rd | 63 ++ man/dip_bundestag_vorgang_list.Rd | 87 ++- man/dip_bundestag_vorgangsposition.Rd | 66 ++ man/dip_bundestag_vorgangsposition_list.Rd | 84 +++ man/dwd_alpine_forecast_text.Rd | 23 man/dwd_avalanche_warnings.Rd | 23 man/dwd_coast_warnings.Rd | 44 + man/dwd_crowd_reports.Rd | 48 + man/dwd_municipality_warnings.Rd | 37 + man/dwd_sea_warning_text.Rd | 23 man/dwd_station_overview.Rd | 51 + man/dwd_warnings_nowcast.Rd | 54 +- man/eco_visio_counters.Rd | 22 man/eco_visio_data.Rd | 19 man/feiertage_list.Rd | 21 man/handelsregister_search.Rd | 38 + man/hilfsmittel_nachweisschema.Rd | 43 + man/hilfsmittel_produkt.Rd | 60 ++ man/hilfsmittel_produktart.Rd | 53 +- man/hilfsmittel_produkte.Rd | 54 +- man/hilfsmittel_produktgruppe.Rd | 57 +- man/hilfsmittel_tree.Rd | 28 - man/hilfsmittel_untergruppe.Rd | 53 +- man/hochwasserzentralen_bundeslaender.Rd | 23 man/hochwasserzentralen_bundesland_geojson.Rd | 39 + man/hochwasserzentralen_bundesland_info.Rd | 23 man/hochwasserzentralen_lagepegel.Rd | 23 man/hochwasserzentralen_pegel_info.Rd | 23 man/jobsuche_logo.Rd | 17 man/jobsuche_search.Rd | 79 ++- man/jobsuche_search_app.Rd | 79 ++- man/klinikatlas_german_places.Rd |only man/klinikatlas_german_states.Rd |only man/klinikatlas_hospital_detail.Rd |only man/klinikatlas_icd_codes.Rd |only man/klinikatlas_locations.Rd |only man/klinikatlas_ops_codes.Rd |only man/klinikatlas_search.Rd |only man/klinikatlas_states.Rd |only man/ladestationen_query.Rd | 47 + man/lebensmittelwarnung_warnings.Rd | 44 + man/luftqualitaet_airquality.Rd | 43 + man/luftqualitaet_airquality_limits.Rd | 31 + man/luftqualitaet_annualbalances.Rd | 44 + man/luftqualitaet_components.Rd | 45 + man/luftqualitaet_measures.Rd | 43 + man/luftqualitaet_measures_limits.Rd | 33 + man/luftqualitaet_meta.Rd | 45 + man/luftqualitaet_networks.Rd | 44 + man/luftqualitaet_scopes.Rd | 45 + man/luftqualitaet_stationsettings.Rd | 44 + man/luftqualitaet_stationtypes.Rd | 43 + man/luftqualitaet_thresholds.Rd | 45 + man/luftqualitaet_transgressions.Rd | 45 + man/luftqualitaet_transgressiontypes.Rd | 44 + man/marktstammdaten_filters_gaserzeugung.Rd | 43 + man/marktstammdaten_filters_gasverbrauch.Rd | 43 + man/marktstammdaten_filters_stromerzeugung.Rd | 43 + man/marktstammdaten_filters_stromverbrauch.Rd | 43 + man/marktstammdaten_gaserzeugung.Rd | 57 +- man/marktstammdaten_gasverbrauch.Rd | 57 +- man/marktstammdaten_stromerzeugung.Rd | 58 +- man/marktstammdaten_stromverbrauch.Rd | 57 +- man/mudab_parameter_values.Rd | 38 + man/mudab_parameters.Rd | 33 + man/mudab_parameters_biologie.Rd | 33 + man/mudab_parameters_biota.Rd | 33 + man/mudab_parameters_sediment.Rd | 33 + man/mudab_parameters_wasser.Rd | 33 + man/mudab_plc_measurements.Rd | 44 + man/mudab_plc_parameters.Rd | 36 + man/mudab_plc_stations.Rd | 34 + man/mudab_project_stations.Rd | 46 + man/mudab_stations.Rd | 31 + man/nina_archive_mowas.Rd | 36 + man/nina_archive_mowas_mapping.Rd | 36 + man/nina_covid_infos.Rd | 35 + man/nina_covid_map.Rd | 35 + man/nina_covid_rules.Rd | 36 + man/nina_covid_ticker.Rd | 35 + man/nina_covid_ticker_message.Rd | 36 + man/nina_dashboard.Rd | 39 + man/nina_event_code.Rd | 36 + man/nina_event_codes.Rd | 39 + man/nina_faqs.Rd | 40 + man/nina_logo.Rd | 36 + man/nina_logos.Rd | 39 + man/nina_mapdata.Rd | 46 + man/nina_mowas_rss.Rd | 36 + man/nina_notfalltipps.Rd | 40 + man/nina_version.Rd | 37 + man/nina_warning.Rd | 36 + man/nina_warning_geojson.Rd | 36 + man/nina_warning_json.Rd | 44 + man/nina_warnings.Rd | 44 + man/pegel_online_measurements.Rd | 25 man/pegel_online_measurements_plot.Rd | 24 man/pegel_online_station.Rd | 57 +- man/pegel_online_stations.Rd | 61 ++ man/pegel_online_timeseries.Rd | 42 + man/pegel_online_waters.Rd | 55 +- man/psm_anwendungen.Rd | 58 ++ man/psm_kultur_gruppen.Rd | 36 + man/psm_mittel.Rd | 39 + man/psm_schadorg_gruppen.Rd | 36 + man/psm_stand.Rd | 20 man/psm_wirkstoffe.Rd | 37 + man/regionalatlas_query.Rd | 31 + man/smard_indices.Rd | 18 man/smard_table.Rd | 24 man/smard_timeseries.Rd | 23 man/tagesschau_channels.Rd | 29 - man/tagesschau_homepage.Rd | 57 +- man/tagesschau_news.Rd | 28 - man/tagesschau_search.Rd | 29 - man/travelwarning_healthcare.Rd | 33 + man/travelwarning_representatives_country.Rd | 51 + man/travelwarning_representatives_germany.Rd | 51 + man/travelwarning_state_names.Rd | 34 + man/travelwarning_warning.Rd | 44 + man/travelwarning_warnings.Rd | 41 + tests/testthat/test-dashboard-deutschland.R | 17 tests/testthat/test-endpoints.R | 18 tests/testthat/test-klinikatlas.R |only tests/testthat/test-registry.R | 9 273 files changed, 11769 insertions(+), 2531 deletions(-)
Title: Spatial Analysis in Archaeology from Refitting Fragments
Description: Methods to analyse spatial units in archaeology from the refitting relationships between fragments of objects scattered in these units (e.g. stratigraphic layers). Graphs are used to model archaeological observations. The package is mainly based on the 'igraph' package for graph analysis. Functions can: 1) create, manipulate, visualise, and simulate fragmentation graphs, 2) measure the cohesion and admixture of archaeological spatial units, and 3) characterise the topology of a specific set of refitting relationships. A series of published empirical datasets is included. Documentation about 'archeofrag' is provided by a vignette and by the accompanying scientific papers: Plutniak (2021, Journal of Archaeological Science, <doi:10.1016/j.jas.2021.105501>) and Plutniak (2022, Journal of Open Source Software, <doi:10.21105/joss.04335>). This package is complemented by the 'archeofrag.gui' R package, a companion GUI application available at <https://analytics.huma-num.fr/Seba [...truncated...]
Author: Sebastien Plutniak [aut, cre]
Maintainer: Sebastien Plutniak <sebastien.plutniak@posteo.net>
Diff between archeofrag versions 1.2.3 dated 2025-09-26 and 1.2.4 dated 2026-04-22
DESCRIPTION | 10 +-- MD5 | 17 +++--- NAMESPACE | 1 NEWS.md | 6 ++ R/frag.cohesion.ranking.R |only R/make_frag_object.R | 4 - TODO | 19 +++++-- inst/doc/archeofrag-vignette.html | 72 ++++++++++++++-------------- man/frag.cohesion.ranking.Rd |only man/frag.layers.cohesion.Rd | 2 tests/testthat/test.frag.cohesion.ranking.R |only 11 files changed, 76 insertions(+), 55 deletions(-)
Title: Weighting for Covariate Balance in Observational Studies
Description: Generates balancing weights for causal effect estimation in observational studies with
binary, multi-category, or continuous point or longitudinal treatments by easing and
extending the functionality of several R packages and providing in-house estimation methods.
Available methods include those that rely on parametric modeling, optimization, and machine learning. Also
allows for assessment of weights and checking of covariate balance by interfacing directly
with the 'cobalt' package. Methods for estimating weighted regression models that take into account
uncertainty in the estimation of the weights via M-estimation or bootstrapping are available. See the vignette "Installing Supporting Packages" for instructions on how
to install any optional package 'WeightIt' uses, including those that may not be on CRAN.
Author: Noah Greifer [aut, cre]
Maintainer: Noah Greifer <noah.greifer@gmail.com>
Diff between WeightIt versions 1.6.0 dated 2026-03-19 and 1.7.0 dated 2026-04-22
WeightIt-1.6.0/WeightIt/R/arg_functions.R |only WeightIt-1.7.0/WeightIt/DESCRIPTION | 18 WeightIt-1.7.0/WeightIt/MD5 | 137 - WeightIt-1.7.0/WeightIt/NAMESPACE | 2 WeightIt-1.7.0/WeightIt/NEWS.md | 20 WeightIt-1.7.0/WeightIt/R/ESS.R | 4 WeightIt-1.7.0/WeightIt/R/anova.glm_weightit.R | 68 WeightIt-1.7.0/WeightIt/R/as.weightit.R | 68 WeightIt-1.7.0/WeightIt/R/calibrate.R | 15 WeightIt-1.7.0/WeightIt/R/coxph_weightit.R |only WeightIt-1.7.0/WeightIt/R/dist_functions.R | 28 WeightIt-1.7.0/WeightIt/R/functions_for_processing.R | 291 +- WeightIt-1.7.0/WeightIt/R/get_w_from_ps.R | 29 WeightIt-1.7.0/WeightIt/R/glm_weightit-methods.R | 153 - WeightIt-1.7.0/WeightIt/R/glm_weightit.R | 222 -- WeightIt-1.7.0/WeightIt/R/glm_weightit_helpers.R | 1097 ++++------ WeightIt-1.7.0/WeightIt/R/make_full_rank.R | 8 WeightIt-1.7.0/WeightIt/R/multinom_weightit.R | 184 + WeightIt-1.7.0/WeightIt/R/ordinal_weightit.R | 189 + WeightIt-1.7.0/WeightIt/R/plot.weightit.R | 4 WeightIt-1.7.0/WeightIt/R/predict.glm_weightit.R | 42 WeightIt-1.7.0/WeightIt/R/sbps.R | 210 - WeightIt-1.7.0/WeightIt/R/summary.weightit.R | 53 WeightIt-1.7.0/WeightIt/R/treat.R | 2 WeightIt-1.7.0/WeightIt/R/trim.R | 42 WeightIt-1.7.0/WeightIt/R/utils.R | 202 - WeightIt-1.7.0/WeightIt/R/weightit.R | 115 - WeightIt-1.7.0/WeightIt/R/weightit.fit.R | 132 - WeightIt-1.7.0/WeightIt/R/weightit2bart.R | 6 WeightIt-1.7.0/WeightIt/R/weightit2cbps.R | 238 +- WeightIt-1.7.0/WeightIt/R/weightit2cfd.R | 136 - WeightIt-1.7.0/WeightIt/R/weightit2ebal.R | 801 +++---- WeightIt-1.7.0/WeightIt/R/weightit2energy.R | 136 - WeightIt-1.7.0/WeightIt/R/weightit2gbm.R | 76 WeightIt-1.7.0/WeightIt/R/weightit2glm.R | 91 WeightIt-1.7.0/WeightIt/R/weightit2ipt.R | 22 WeightIt-1.7.0/WeightIt/R/weightit2npcbps.R | 6 WeightIt-1.7.0/WeightIt/R/weightit2optweight.R | 51 WeightIt-1.7.0/WeightIt/R/weightit2ps.R | 4 WeightIt-1.7.0/WeightIt/R/weightit2super.R | 32 WeightIt-1.7.0/WeightIt/R/weightit2user.R | 20 WeightIt-1.7.0/WeightIt/R/weightitMSM.R | 34 WeightIt-1.7.0/WeightIt/README.md | 14 WeightIt-1.7.0/WeightIt/build/stage23.rdb |binary WeightIt-1.7.0/WeightIt/inst/doc/WeightIt.html | 62 WeightIt-1.7.0/WeightIt/inst/doc/estimating-effects.Rmd | 151 - WeightIt-1.7.0/WeightIt/inst/doc/estimating-effects.html | 711 +++--- WeightIt-1.7.0/WeightIt/inst/doc/installing-packages.html | 4 WeightIt-1.7.0/WeightIt/man/WeightIt-package.Rd | 2 WeightIt-1.7.0/WeightIt/man/coxph_weightit.Rd |only WeightIt-1.7.0/WeightIt/man/glm_weightit.Rd | 138 - WeightIt-1.7.0/WeightIt/man/macros/macros.Rd | 3 WeightIt-1.7.0/WeightIt/man/method_ebal.Rd | 24 WeightIt-1.7.0/WeightIt/man/method_ipt.Rd | 3 WeightIt-1.7.0/WeightIt/man/multinom_weightit.Rd |only WeightIt-1.7.0/WeightIt/man/ordinal_weightit.Rd |only WeightIt-1.7.0/WeightIt/man/predict.glm_weightit.Rd | 6 WeightIt-1.7.0/WeightIt/man/sbps.Rd | 29 WeightIt-1.7.0/WeightIt/man/weightit.Rd | 2 WeightIt-1.7.0/WeightIt/tests/testthat/helpers.R | 12 WeightIt-1.7.0/WeightIt/tests/testthat/test-glm_weightit.R | 6 WeightIt-1.7.0/WeightIt/tests/testthat/test-method_cbps.R | 32 WeightIt-1.7.0/WeightIt/tests/testthat/test-method_ebal.R | 98 WeightIt-1.7.0/WeightIt/tests/testthat/test-method_glm.R | 22 WeightIt-1.7.0/WeightIt/tests/testthat/test-method_ipt.R | 24 WeightIt-1.7.0/WeightIt/tests/testthat/test-moments.R | 9 WeightIt-1.7.0/WeightIt/tests/testthat/test-multinom_weightit.R | 6 WeightIt-1.7.0/WeightIt/tests/testthat/test-ordinal_weightit.R | 6 WeightIt-1.7.0/WeightIt/tests/testthat/test-update.R | 57 WeightIt-1.7.0/WeightIt/tests/testthat/test-vcov_arg.R | 21 WeightIt-1.7.0/WeightIt/vignettes/estimating-effects.Rmd | 151 - WeightIt-1.7.0/WeightIt/vignettes/references.bib | 15 72 files changed, 3312 insertions(+), 3284 deletions(-)
Title: Evaluation of Tweedie Exponential Family Models
Description: Maximum likelihood computations for Tweedie families, including the series expansion (Dunn and Smyth, 2005; <doi:10.1007/s11222-005-4070-y>) and the Fourier inversion (Dunn and Smyth, 2008; <doi:10.1007/s11222-007-9039-6>), and related methods.
Author: Peter K. Dunn [cre, aut]
Maintainer: Peter K. Dunn <pdunn2@usc.edu.au>
Diff between tweedie versions 3.0.17 dated 2026-02-27 and 3.0.19 dated 2026-04-22
tweedie-3.0.17/tweedie/src/Doxyfile |only tweedie-3.0.17/tweedie/src/deps.out |only tweedie-3.0.17/tweedie/src/docs |only tweedie-3.0.19/tweedie/DESCRIPTION | 8 tweedie-3.0.19/tweedie/MD5 | 427 ------------ tweedie-3.0.19/tweedie/NEWS.md | 10 tweedie-3.0.19/tweedie/R/tweedie_plot.R | 215 ++++-- tweedie-3.0.19/tweedie/build/partial.rdb |binary tweedie-3.0.19/tweedie/build/vignette.rds |binary tweedie-3.0.19/tweedie/inst/CITATION | 2 tweedie-3.0.19/tweedie/inst/doc/tweedie.html | 46 - tweedie-3.0.19/tweedie/man/tweedie_plot.Rd | 2 tweedie-3.0.19/tweedie/src/Calcs_K.f90 | 11 tweedie-3.0.19/tweedie/src/Makevars.HIDE |only tweedie-3.0.19/tweedie/src/Makevars.in | 7 tweedie-3.0.19/tweedie/src/accelerate.f90 | 78 +- tweedie-3.0.19/tweedie/tests/testthat/Rplots.pdf |binary tweedie-3.0.19/tweedie/tests/testthat/test-other-ptweedie.R | 3 tweedie-3.0.19/tweedie/tests/testthat/tests-valgrind.RHIDE |only 19 files changed, 251 insertions(+), 558 deletions(-)
Title: Mobility Oriented-Parity Metric
Description: A set of tools to perform multiple versions of the Mobility
Oriented-Parity metric. This multivariate analysis helps to characterize
levels of dissimilarity between a set of conditions of reference and another
set of conditions of interest. If predictive models are transferred to
conditions different from those over which models were calibrated (trained),
this metric helps to identify transfer conditions that differ
substantially from those of calibration. These tools are implemented
following principles proposed in Owens et al. (2013)
<doi:10.1016/j.ecolmodel.2013.04.011>, and expanded to obtain more detailed
results that aid in interpretation as in Cobos et al. (2024)
<doi:10.21425/fob.17.132916>.
Author: Marlon E. Cobos [aut, cre] ,
Hannah L. Owens [aut] ,
Jorge Soberon [aut] ,
A. Townsend Peterson [aut]
Maintainer: Marlon E. Cobos <manubio13@gmail.com>
Diff between mop versions 0.1.3 dated 2025-04-24 and 0.1.4 dated 2026-04-22
DESCRIPTION | 21 +++++++++------ MD5 | 26 +++++++++---------- NEWS.md | 6 ++++ R/out_range.R | 14 +++++----- README.md | 54 +++++++++++++++++++++-------------------- man/figures/README-load-1.png |binary man/figures/README-load-2.png |binary man/figures/README-plots-1.png |binary man/figures/README-plots-2.png |binary man/figures/README-plots-3.png |binary man/figures/README-plots-4.png |binary man/figures/README-plots-5.png |binary src/Makevars.ucrt | 1 src/Makevars.win | 2 - 14 files changed, 66 insertions(+), 58 deletions(-)
Title: A Centralized Metadata Object Focus on Clinical Trial Data
Programming Workflows
Description: Create an immutable container holding metadata for the
purpose of better enabling programming activities and functionality of
other packages within the clinical programming workflow.
Author: Liam Hobby [aut, cre],
Christina Fillmore [aut] ,
Bill Denney [aut],
Maya Gans [aut] ,
Ashley Tarasiewicz [aut],
Mike Stackhouse [aut] ,
Tamara Senior [aut],
GSK/Atorus JPT [cph, fnd]
Maintainer: Liam Hobby <liam.f.hobby@gsk.com>
Diff between metacore versions 0.2.1 dated 2025-07-21 and 0.3.0 dated 2026-04-22
metacore-0.2.1/metacore/man/check_columns.Rd |only metacore-0.3.0/metacore/DESCRIPTION | 12 metacore-0.3.0/metacore/MD5 | 83 metacore-0.3.0/metacore/NAMESPACE | 2 metacore-0.3.0/metacore/NEWS.md | 141 - metacore-0.3.0/metacore/R/DatasetMeta.R | 111 metacore-0.3.0/metacore/R/checks.R | 64 metacore-0.3.0/metacore/R/metacore-package.R |only metacore-0.3.0/metacore/R/metacore.R | 881 +++--- metacore-0.3.0/metacore/R/spec_builder.R | 1213 +++++---- metacore-0.3.0/metacore/R/utils.R | 271 +- metacore-0.3.0/metacore/R/validators.R | 609 ++-- metacore-0.3.0/metacore/R/xml_builders.R | 679 ++--- metacore-0.3.0/metacore/R/xml_helpers.R | 18 metacore-0.3.0/metacore/R/zzz.R | 70 metacore-0.3.0/metacore/README.md | 39 metacore-0.3.0/metacore/build/vignette.rds |binary metacore-0.3.0/metacore/inst/WORDLIST |only metacore-0.3.0/metacore/inst/doc/Building_Specification_Readers.R | 129 - metacore-0.3.0/metacore/inst/doc/Building_Specification_Readers.Rmd | 146 - metacore-0.3.0/metacore/inst/doc/Building_Specification_Readers.html | 676 ++--- metacore-0.3.0/metacore/inst/doc/Example.R | 2 metacore-0.3.0/metacore/inst/doc/Example.Rmd | 2 metacore-0.3.0/metacore/inst/doc/Example.html | 131 - metacore-0.3.0/metacore/man/create_tbl.Rd | 4 metacore-0.3.0/metacore/man/define_to_metacore.Rd | 21 metacore-0.3.0/metacore/man/figures/labeled-ds_vars.png |binary metacore-0.3.0/metacore/man/figures/labeled_schema.png |binary metacore-0.3.0/metacore/man/figures/lifecycle-deprecated.svg |only metacore-0.3.0/metacore/man/figures/lifecycle-experimental.svg |only metacore-0.3.0/metacore/man/figures/lifecycle-stable.svg |only metacore-0.3.0/metacore/man/figures/lifecycle-superseded.svg |only metacore-0.3.0/metacore/man/is_DatasetMeta.Rd | 6 metacore-0.3.0/metacore/man/metacore-package.Rd |only metacore-0.3.0/metacore/man/metacore.Rd | 24 metacore-0.3.0/metacore/man/select_dataset.Rd | 24 metacore-0.3.0/metacore/man/spec_to_metacore.Rd | 40 metacore-0.3.0/metacore/man/spec_type_to_ds_vars.Rd | 2 metacore-0.3.0/metacore/man/verify_DatasetMeta.Rd | 6 metacore-0.3.0/metacore/tests/testthat/spec_failed_regex.xlsx |only metacore-0.3.0/metacore/tests/testthat/test-checks.R | 77 metacore-0.3.0/metacore/tests/testthat/test-metacore.R | 487 +++ metacore-0.3.0/metacore/tests/testthat/test-reader.R | 1272 +++++----- metacore-0.3.0/metacore/tests/testthat/test-utils.R | 331 ++ metacore-0.3.0/metacore/tests/testthat/test-validators.R | 243 + metacore-0.3.0/metacore/vignettes/Building_Specification_Readers.Rmd | 146 - metacore-0.3.0/metacore/vignettes/Example.Rmd | 2 47 files changed, 4767 insertions(+), 3197 deletions(-)
Title: JavaScript Object Signing and Encryption
Description: Read and write JSON Web Keys (JWK, rfc7517), generate and verify JSON
Web Signatures (JWS, rfc7515) and encode/decode JSON Web Tokens (JWT, rfc7519)
<https://datatracker.ietf.org/wg/jose/documents/>. These standards provide
modern signing and encryption formats that are natively supported by browsers
via the JavaScript WebCryptoAPI <https://www.w3.org/TR/webcrypto/#jose>,
and used by services like OAuth 2.0, LetsEncrypt, and Github Apps.
Author: Jeroen Ooms [aut, cre]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>
Diff between jose versions 1.2.1 dated 2024-10-04 and 2.0.0 dated 2026-04-22
DESCRIPTION | 12 ++++----- MD5 | 41 +++++++++++++++++--------------- NAMESPACE | 5 ++++ NEWS | 4 +++ R/claim.R | 2 - R/jwt.R | 51 ++++++++++++++++++++++++++++++----------- R/read.R | 12 +++++++++ R/write.R | 20 ++++++++++++++++ build/vignette.rds |binary inst/doc/jwk.Rmd | 2 - inst/doc/jwk.html | 30 ++++++++++++------------ inst/doc/jwt.R | 4 +++ inst/doc/jwt.html | 32 +++++++++++++------------ man/jwt_claim.Rd | 2 - man/jwt_encode.Rd | 2 - tests/keys/ed25519.json |only tests/keys/ed25519.pub.json |only tests/testthat/test_ec.R | 5 ++++ tests/testthat/test_ed25519.R |only tests/testthat/test_examples.R | 11 ++++++++ tests/testthat/test_rsa.R | 4 +++ tests/testthat/test_sizes.R | 7 +++++ vignettes/jwk.Rmd | 2 - 23 files changed, 175 insertions(+), 73 deletions(-)
Title: Data Science for Psychologists
Description: All datasets and functions required for the examples and exercises of the book "Data Science for Psychologists" (by Hansjoerg Neth, Konstanz University, 2026, <doi:10.5281/zenodo.7229812>), freely available at <https://hneth-ds4psy.share.connect.posit.cloud/>. The book and corresponding courses introduce principles and methods of data science to students of psychology and other biological or social sciences. The 'ds4psy' package primarily provides datasets, but also functions for data generation and manipulation (e.g., of text and time data) and graphics that are used in the book and its exercises. All functions included in 'ds4psy' are designed to be explicit and instructive, rather than efficient or elegant.
Author: Hansjoerg Neth [aut, cre]
Maintainer: Hansjoerg Neth <h.neth@uni.kn>
Diff between ds4psy versions 1.2.0 dated 2025-11-05 and 1.3.0 dated 2026-04-22
DESCRIPTION | 12 ++-- MD5 | 28 +++++------ NEWS.md | 101 +++++++++++++++++++++++++++++----------- R/data.R | 12 +++- README.md | 126 +++++++++++++++++++++++++++++++++------------------ build/partial.rdb |binary build/vignette.rds |binary data/i2ds_survey.rda |binary inst/CITATION | 8 +-- inst/WORDLIST | 2 inst/doc/ds4psy.R | 21 +++++++- inst/doc/ds4psy.Rmd | 63 ++++++++++++++++++++----- inst/doc/ds4psy.html | 57 +++++++++++++++++------ man/i2ds_survey.Rd | 8 ++- vignettes/ds4psy.Rmd | 63 ++++++++++++++++++++----- 15 files changed, 359 insertions(+), 142 deletions(-)
Title: Compare Detrital Zircon Suites
Description: Compare detrital zircon suites by uploading univariate,
U-Pb age, or bivariate, U-Pb age and Lu-Hf data, in a 'shiny'-based
user-interface. Outputs publication quality figures using 'ggplot2', and
tables of statistics currently in use in the detrital zircon geochronology
community.
Author: Magnus Kristoffersen [aut, cre]
Maintainer: Magnus Kristoffersen <magnus.kristoffersen@geo.uio.no>
Diff between detzrcr versions 0.3.1 dated 2020-07-23 and 0.3.2 dated 2026-04-22
DESCRIPTION | 11 - MD5 | 22 +- NEWS.md | 4 R/calculations.R | 2 R/plotting.R | 155 ++++++++++--------- README.md | 4 build/vignette.rds |binary inst/CITATION | 25 +-- inst/doc/detzrcr-vignette.R | 18 +- inst/doc/detzrcr-vignette.Rmd | 8 - inst/doc/detzrcr-vignette.html | 321 +++++++++++++++++++++++------------------ vignettes/detzrcr-vignette.Rmd | 8 - 12 files changed, 317 insertions(+), 261 deletions(-)
Title: Simulate Package Installation and Attach
Description: Simulates the process of installing a package and then
attaching it. This is a key part of the 'devtools' package as it
allows you to rapidly iterate while developing a package.
Author: Hadley Wickham [aut],
Winston Chang [aut],
Jim Hester [aut],
Lionel Henry [aut, cre],
Posit Software, PBC [cph, fnd],
R Core team [ctb]
Maintainer: Lionel Henry <lionel@posit.co>
Diff between pkgload versions 1.5.1 dated 2026-04-01 and 1.5.2 dated 2026-04-22
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 5 +++++ R/dev-topic.R | 21 ++++++++++----------- tests/testthat/test-help.R | 17 +++++++++++++++++ 5 files changed, 39 insertions(+), 18 deletions(-)
Title: 'NetCDF' Geometry and Time Series
Description: Tools to create time series and geometry 'NetCDF' files.
Author: David Blodgett [aut, cre],
Luke Winslow [ctb]
Maintainer: David Blodgett <dblodgett@usgs.gov>
Diff between ncdfgeom versions 1.1.6 dated 2024-01-25 and 1.2.2 dated 2026-04-22
ncdfgeom-1.1.6/ncdfgeom/inst/extdata/Yahara_alb.zip |only ncdfgeom-1.1.6/ncdfgeom/inst/extdata/hucDemo/hucPolygons.dbf |only ncdfgeom-1.1.6/ncdfgeom/inst/extdata/hucDemo/hucPolygons.prj |only ncdfgeom-1.1.6/ncdfgeom/inst/extdata/hucDemo/hucPolygons.shp |only ncdfgeom-1.1.6/ncdfgeom/inst/extdata/hucDemo/hucPolygons.shx |only ncdfgeom-1.1.6/ncdfgeom/tests/testthat/data/NHDLine/NHDLine.dbf |only ncdfgeom-1.1.6/ncdfgeom/tests/testthat/data/NHDLine/NHDLine.prj |only ncdfgeom-1.1.6/ncdfgeom/tests/testthat/data/NHDLine/NHDLine.shp |only ncdfgeom-1.1.6/ncdfgeom/tests/testthat/data/NHDLine/NHDLine.shx |only ncdfgeom-1.1.6/ncdfgeom/tests/testthat/data/Yahara_alb/Yahara_River_HRUs_alb_eq.dbf |only ncdfgeom-1.1.6/ncdfgeom/tests/testthat/data/Yahara_alb/Yahara_River_HRUs_alb_eq.prj |only ncdfgeom-1.1.6/ncdfgeom/tests/testthat/data/Yahara_alb/Yahara_River_HRUs_alb_eq.shp |only ncdfgeom-1.1.6/ncdfgeom/tests/testthat/data/Yahara_alb/Yahara_River_HRUs_alb_eq.shx |only ncdfgeom-1.1.6/ncdfgeom/tests/testthat/data/se_sites/se_sitest.dbf |only ncdfgeom-1.1.6/ncdfgeom/tests/testthat/data/se_sites/se_sitest.prj |only ncdfgeom-1.1.6/ncdfgeom/tests/testthat/data/se_sites/se_sitest.shp |only ncdfgeom-1.1.6/ncdfgeom/tests/testthat/data/se_sites/se_sitest.shx |only ncdfgeom-1.2.2/ncdfgeom/DESCRIPTION | 12 ncdfgeom-1.2.2/ncdfgeom/MD5 | 96 ++--- ncdfgeom-1.2.2/ncdfgeom/NAMESPACE | 2 ncdfgeom-1.2.2/ncdfgeom/NEWS.md | 14 ncdfgeom-1.2.2/ncdfgeom/R/calculate_area_intersection_weights.R | 170 +++++++--- ncdfgeom-1.2.2/ncdfgeom/R/create_cell_geometry.R | 12 ncdfgeom-1.2.2/ncdfgeom/R/read_attribute_data.R | 4 ncdfgeom-1.2.2/ncdfgeom/R/read_geometry.R | 8 ncdfgeom-1.2.2/ncdfgeom/R/read_timeseries_dsg.R | 4 ncdfgeom-1.2.2/ncdfgeom/R/write_attribute_data.R | 17 - ncdfgeom-1.2.2/ncdfgeom/R/write_geometry.R | 28 + ncdfgeom-1.2.2/ncdfgeom/R/write_point_dsg.R | 4 ncdfgeom-1.2.2/ncdfgeom/R/write_timeseries_dsg.R | 11 ncdfgeom-1.2.2/ncdfgeom/README.md | 7 ncdfgeom-1.2.2/ncdfgeom/build/vignette.rds |binary ncdfgeom-1.2.2/ncdfgeom/inst/WORDLIST |only ncdfgeom-1.2.2/ncdfgeom/inst/doc/geometry.R | 4 ncdfgeom-1.2.2/ncdfgeom/inst/doc/geometry.html | 7 ncdfgeom-1.2.2/ncdfgeom/inst/doc/ncdfgeom.R | 150 ++++---- ncdfgeom-1.2.2/ncdfgeom/inst/doc/ncdfgeom.Rmd | 4 ncdfgeom-1.2.2/ncdfgeom/inst/doc/ncdfgeom.html | 11 ncdfgeom-1.2.2/ncdfgeom/inst/doc/polygon_intersection.R |only ncdfgeom-1.2.2/ncdfgeom/inst/doc/polygon_intersection.Rmd |only ncdfgeom-1.2.2/ncdfgeom/inst/doc/polygon_intersection.html |only ncdfgeom-1.2.2/ncdfgeom/inst/doc/timeseries.html | 1 ncdfgeom-1.2.2/ncdfgeom/inst/extdata/gdptools_prl_out.csv |only ncdfgeom-1.2.2/ncdfgeom/man/calculate_area_intersection_weights.Rd | 109 ++++-- ncdfgeom-1.2.2/ncdfgeom/man/read_attribute_data.Rd | 2 ncdfgeom-1.2.2/ncdfgeom/man/read_geometry.Rd | 4 ncdfgeom-1.2.2/ncdfgeom/man/read_timeseries_dsg.Rd | 2 ncdfgeom-1.2.2/ncdfgeom/man/write_geometry.Rd | 2 ncdfgeom-1.2.2/ncdfgeom/man/write_timeseries_dsg.Rd | 6 ncdfgeom-1.2.2/ncdfgeom/tests/testthat/data/NHDLine/NHDLine.gpkg |only ncdfgeom-1.2.2/ncdfgeom/tests/testthat/data/Yahara_alb/Yahara_River_HRUs_alb_eq.gpkg |only ncdfgeom-1.2.2/ncdfgeom/tests/testthat/data/se_sites/se_sitest.gpkg |only ncdfgeom-1.2.2/ncdfgeom/tests/testthat/helper-functions.R | 3 ncdfgeom-1.2.2/ncdfgeom/tests/testthat/test_area_weighted.R | 167 +++++++++ ncdfgeom-1.2.2/ncdfgeom/tests/testthat/test_check_ncdf.R | 2 ncdfgeom-1.2.2/ncdfgeom/tests/testthat/test_create_cell_geometry.R | 4 ncdfgeom-1.2.2/ncdfgeom/tests/testthat/test_line.R | 2 ncdfgeom-1.2.2/ncdfgeom/tests/testthat/test_point.R | 2 ncdfgeom-1.2.2/ncdfgeom/tests/testthat/test_poly.R | 2 ncdfgeom-1.2.2/ncdfgeom/tests/testthat/test_read-write_attribute_data.R | 2 ncdfgeom-1.2.2/ncdfgeom/vignettes/ncdfgeom.Rmd | 4 ncdfgeom-1.2.2/ncdfgeom/vignettes/polygon_intersection.Rmd |only 62 files changed, 601 insertions(+), 278 deletions(-)
Title: Advanced Tables for Markdown/HTML
Description: Tables with state-of-the-art layout elements such as row spanners,
column spanners, table spanners, zebra striping, and more. While allowing
advanced layout, the underlying css-structure is simple in order to maximize
compatibility with common word processors. The package also contains a few
text formatting functions that help outputting text compatible with HTML/LaTeX.
Author: Max Gordon [aut, cre],
Stephen Gragg [aut],
Peter Konings [aut]
Maintainer: Max Gordon <max@gforge.se>
Diff between htmlTable versions 2.4.3 dated 2024-07-20 and 2.5.0 dated 2026-04-22
htmlTable-2.4.3/htmlTable/tests/testthat/structure.tex |only htmlTable-2.4.3/htmlTable/tests/visual_tests/word_test.html |only htmlTable-2.5.0/htmlTable/DESCRIPTION | 8 htmlTable-2.5.0/htmlTable/MD5 | 91 +-- htmlTable-2.5.0/htmlTable/NAMESPACE | 1 htmlTable-2.5.0/htmlTable/NEWS.md | 4 htmlTable-2.5.0/htmlTable/R/htmlTable.R | 22 htmlTable-2.5.0/htmlTable/R/htmlTable_helpers_getStyle.R | 3 htmlTable-2.5.0/htmlTable/R/htmlTable_helpers_prepareColors.R | 27 - htmlTable-2.5.0/htmlTable/R/htmlTable_render_addCells.R | 16 htmlTable-2.5.0/htmlTable/R/htmlTable_render_prAddEmptySpacerCell.R | 4 htmlTable-2.5.0/htmlTable/R/htmlTable_style_handlers.R | 192 +++++++ htmlTable-2.5.0/htmlTable/R/interactiveTable.R | 23 htmlTable-2.5.0/htmlTable/R/tidyHtmlTable.R | 55 +- htmlTable-2.5.0/htmlTable/R/tidyHtmlTable_helpers_bindDataListIntoColumns.r | 6 htmlTable-2.5.0/htmlTable/R/tidyHtmlTable_helpers_checkUniqueness.r | 2 htmlTable-2.5.0/htmlTable/R/tidyHtmlTable_helpers_extractElementsAndConvertToTbl.R | 4 htmlTable-2.5.0/htmlTable/R/tidyHtmlTable_helpers_getColTbl.R | 4 htmlTable-2.5.0/htmlTable/R/tidyHtmlTable_helpers_getRowTbl.r | 7 htmlTable-2.5.0/htmlTable/R/tidyHtmlTable_helpers_removeRowsWithNA.r | 11 htmlTable-2.5.0/htmlTable/R/txtFrmt_round.R | 7 htmlTable-2.5.0/htmlTable/R/txtFrmt_round_data.frame.R | 7 htmlTable-2.5.0/htmlTable/README.md | 125 +---- htmlTable-2.5.0/htmlTable/build/vignette.rds |binary htmlTable-2.5.0/htmlTable/inst/doc/complex_tables.Rmd | 2 htmlTable-2.5.0/htmlTable/inst/doc/complex_tables.html | 11 htmlTable-2.5.0/htmlTable/inst/doc/general.R | 72 +- htmlTable-2.5.0/htmlTable/inst/doc/general.Rmd | 79 +-- htmlTable-2.5.0/htmlTable/inst/doc/general.html | 246 ++++++---- htmlTable-2.5.0/htmlTable/inst/doc/text_formatters.html | 7 htmlTable-2.5.0/htmlTable/inst/doc/tidyHtmlTable.html | 7 htmlTable-2.5.0/htmlTable/inst/examples/concatHtmlTables_example.R | 45 - htmlTable-2.5.0/htmlTable/inst/examples/htmlTable_example.R | 92 +-- htmlTable-2.5.0/htmlTable/inst/examples/interactiveTable_example.R | 15 htmlTable-2.5.0/htmlTable/inst/examples/tidyHtmlTable_example.R | 31 - htmlTable-2.5.0/htmlTable/man/addStyles.Rd | 8 htmlTable-2.5.0/htmlTable/man/concatHtmlTables.Rd | 45 - htmlTable-2.5.0/htmlTable/man/getHtmlTableStyle.Rd | 6 htmlTable-2.5.0/htmlTable/man/hasHtmlTableStyle.Rd | 9 htmlTable-2.5.0/htmlTable/man/highlightRow.Rd |only htmlTable-2.5.0/htmlTable/man/htmlTable.Rd | 94 +-- htmlTable-2.5.0/htmlTable/man/interactiveTable.Rd | 19 htmlTable-2.5.0/htmlTable/man/prGetScriptString.Rd | 2 htmlTable-2.5.0/htmlTable/man/tidyHtmlTable.Rd | 33 - htmlTable-2.5.0/htmlTable/man/txtRound.Rd | 5 htmlTable-2.5.0/htmlTable/tests/testthat/test-api-compatibility.R |only htmlTable-2.5.0/htmlTable/tests/testthat/test-row_highlight.R |only htmlTable-2.5.0/htmlTable/vignettes/complex_tables.Rmd | 2 htmlTable-2.5.0/htmlTable/vignettes/general.Rmd | 79 +-- 49 files changed, 875 insertions(+), 653 deletions(-)
Title: Evaluation of 3D Meteorological and Air Quality Models
Description: Provides tools for post-process, evaluate and visualize results from 3d Meteorological and Air Quality models against point observations (i.e. surface stations) and grid (i.e. satellite) observations.
Author: Daniel Schuch [aut, cre]
Maintainer: Daniel Schuch <underschuch@gmail.com>
Diff between eva3dm versions 1.11 dated 2025-06-02 and 1.20 dated 2026-04-21
eva3dm-1.11/eva3dm/inst/doc/workflow.R |only eva3dm-1.11/eva3dm/inst/doc/workflow.Rmd |only eva3dm-1.11/eva3dm/inst/doc/workflow.html |only eva3dm-1.11/eva3dm/vignettes/workflow.Rmd |only eva3dm-1.20/eva3dm/DESCRIPTION | 8 eva3dm-1.20/eva3dm/LICENSE | 4 eva3dm-1.20/eva3dm/MD5 | 199 eva3dm-1.20/eva3dm/NAMESPACE | 91 eva3dm-1.20/eva3dm/NEWS.md | 99 eva3dm-1.20/eva3dm/R/atr.R | 204 eva3dm-1.20/eva3dm/R/calculate_column.R |only eva3dm-1.20/eva3dm/R/cate.R | 253 eva3dm-1.20/eva3dm/R/daily.R | 131 eva3dm-1.20/eva3dm/R/eva.R | 598 + eva3dm-1.20/eva3dm/R/eva3dm-package.R | 2 eva3dm-1.20/eva3dm/R/extract_8h_max.R | 794 +- eva3dm-1.20/eva3dm/R/extract_mean.R | 750 +- eva3dm-1.20/eva3dm/R/extract_serie.R | 734 +- eva3dm-1.20/eva3dm/R/extract_surgical.R |only eva3dm-1.20/eva3dm/R/get_distances.R | 50 eva3dm-1.20/eva3dm/R/hourly.R | 131 eva3dm-1.20/eva3dm/R/interp.R | 94 eva3dm-1.20/eva3dm/R/io_stats.R | 154 eva3dm-1.20/eva3dm/R/ma8h.R | 129 eva3dm-1.20/eva3dm/R/mda8.R | 84 eva3dm-1.20/eva3dm/R/monthly.R |only eva3dm-1.20/eva3dm/R/ncdump.R | 46 eva3dm-1.20/eva3dm/R/plot_diff.R | 155 eva3dm-1.20/eva3dm/R/plot_legend.R | 184 eva3dm-1.20/eva3dm/R/plot_overlay.R | 352 - eva3dm-1.20/eva3dm/R/plot_rast.R | 950 +-- eva3dm-1.20/eva3dm/R/q2rh.R | 160 eva3dm-1.20/eva3dm/R/rain.R | 120 eva3dm-1.20/eva3dm/R/rast_to_netcdf.R | 152 eva3dm-1.20/eva3dm/R/rh2q.R | 110 eva3dm-1.20/eva3dm/R/sat.R | 290 eva3dm-1.20/eva3dm/R/select.R | 253 eva3dm-1.20/eva3dm/R/stat.R | 434 - eva3dm-1.20/eva3dm/R/templates.R | 5053 ++++++++-------- eva3dm-1.20/eva3dm/R/vars.R | 72 eva3dm-1.20/eva3dm/R/wind_conv.R | 224 eva3dm-1.20/eva3dm/R/wrf_rast.R | 538 - eva3dm-1.20/eva3dm/R/wrf_sds.R |only eva3dm-1.20/eva3dm/R/yearly.R |only eva3dm-1.20/eva3dm/build/vignette.rds |binary eva3dm-1.20/eva3dm/inst/CITATION | 28 eva3dm-1.20/eva3dm/inst/doc/intro.R |only eva3dm-1.20/eva3dm/inst/doc/intro.Rmd |only eva3dm-1.20/eva3dm/inst/doc/intro.html |only eva3dm-1.20/eva3dm/inst/doc/satellite.R |only eva3dm-1.20/eva3dm/inst/doc/satellite.Rmd |only eva3dm-1.20/eva3dm/inst/doc/satellite.html |only eva3dm-1.20/eva3dm/inst/extdata/TEMPO_crop_Boston.nc |only eva3dm-1.20/eva3dm/inst/extdata/sample.csv | 8 eva3dm-1.20/eva3dm/inst/extdata/sample.txt | 8 eva3dm-1.20/eva3dm/inst/extdata/sat_cat.csv | 4 eva3dm-1.20/eva3dm/inst/extdata/sat_cat.txt | 4 eva3dm-1.20/eva3dm/inst/extdata/sites_AQS.Rds |only eva3dm-1.20/eva3dm/inst/extdata/sites_CASTNET.Rds |only eva3dm-1.20/eva3dm/inst/extdata/sites_EMEP.Rds |only eva3dm-1.20/eva3dm/inst/extdata/sites_FLUXNET.Rds |only eva3dm-1.20/eva3dm/inst/extdata/sites_IMPROVE.Rds |only eva3dm-1.20/eva3dm/inst/extdata/sites_TOAR.Rds |only eva3dm-1.20/eva3dm/inst/extdata/wrf_4d_o3_Boston.nc |only eva3dm-1.20/eva3dm/inst/extdata/wrf_column_o3_Boston.nc |only eva3dm-1.20/eva3dm/man/atr.Rd | 82 eva3dm-1.20/eva3dm/man/calculate_column.Rd |only eva3dm-1.20/eva3dm/man/cate.Rd | 147 eva3dm-1.20/eva3dm/man/daily.Rd | 121 eva3dm-1.20/eva3dm/man/eva.Rd | 257 eva3dm-1.20/eva3dm/man/eva3dm-package.Rd | 50 eva3dm-1.20/eva3dm/man/extract_max_8h.Rd | 104 eva3dm-1.20/eva3dm/man/extract_mean.Rd | 100 eva3dm-1.20/eva3dm/man/extract_serie.Rd | 223 eva3dm-1.20/eva3dm/man/extract_surgical.Rd |only eva3dm-1.20/eva3dm/man/get_distances.Rd | 54 eva3dm-1.20/eva3dm/man/grapes-IN-grapes.Rd | 124 eva3dm-1.20/eva3dm/man/grapes-at-grapes.Rd | 84 eva3dm-1.20/eva3dm/man/hourly.Rd | 119 eva3dm-1.20/eva3dm/man/interp.Rd | 76 eva3dm-1.20/eva3dm/man/legend_range.Rd | 132 eva3dm-1.20/eva3dm/man/ma8h.Rd | 84 eva3dm-1.20/eva3dm/man/mda8.Rd | 84 eva3dm-1.20/eva3dm/man/monthly.Rd |only eva3dm-1.20/eva3dm/man/ncdump.Rd | 44 eva3dm-1.20/eva3dm/man/overlay.Rd | 169 eva3dm-1.20/eva3dm/man/plot_diff.Rd | 113 eva3dm-1.20/eva3dm/man/plot_rast.Rd | 194 eva3dm-1.20/eva3dm/man/q2rh.Rd | 98 eva3dm-1.20/eva3dm/man/rain.Rd | 58 eva3dm-1.20/eva3dm/man/rast_to_netcdf.Rd | 76 eva3dm-1.20/eva3dm/man/read_stat.Rd | 66 eva3dm-1.20/eva3dm/man/rh2q.Rd | 88 eva3dm-1.20/eva3dm/man/sat.Rd | 176 eva3dm-1.20/eva3dm/man/select.Rd | 3 eva3dm-1.20/eva3dm/man/stat.Rd | 144 eva3dm-1.20/eva3dm/man/template.Rd | 127 eva3dm-1.20/eva3dm/man/uv2wd.Rd | 102 eva3dm-1.20/eva3dm/man/uv2ws.Rd | 104 eva3dm-1.20/eva3dm/man/vars.Rd | 50 eva3dm-1.20/eva3dm/man/wrf_rast.Rd | 126 eva3dm-1.20/eva3dm/man/wrf_sds.Rd |only eva3dm-1.20/eva3dm/man/write_stat.Rd | 86 eva3dm-1.20/eva3dm/man/yearly.Rd |only eva3dm-1.20/eva3dm/tests/testthat.R | 24 eva3dm-1.20/eva3dm/tests/testthat/test-conversion.R | 118 eva3dm-1.20/eva3dm/tests/testthat/test-eva-stat-in.R | 188 eva3dm-1.20/eva3dm/tests/testthat/test-extraction.R | 114 eva3dm-1.20/eva3dm/tests/testthat/test-rast.R | 80 eva3dm-1.20/eva3dm/tests/testthat/test-sat-cate-io.R | 78 eva3dm-1.20/eva3dm/tests/testthat/test-select.R | 26 eva3dm-1.20/eva3dm/tests/testthat/test-templates.R | 45 eva3dm-1.20/eva3dm/tests/testthat/test-time-series.R | 33 eva3dm-1.20/eva3dm/tests/testthat/test-utils.R | 48 eva3dm-1.20/eva3dm/vignettes/intro.Rmd |only eva3dm-1.20/eva3dm/vignettes/satellite.Rmd |only 116 files changed, 9275 insertions(+), 8798 deletions(-)
Title: Diagnostic Tool by Multiple Imputation for Regression
Discontinuity Designs
Description: Estimates average treatment effects at the cutoff based on sharp
regression discontinuity designs (RDD) and multiple imputation regression
discontinuity designs (MIRDD). It provides diagnostic tools for RDD by
comparing results with those from MIRDD, as proposed in Takahashi (2023)
<doi:10.1080/03610918.2021.1960374>. The package includes datasets from
Takahashi (2023).
Author: Masayoshi Takahashi [aut, cre]
Maintainer: Masayoshi Takahashi <mtakahashi615@g.chuo-u.ac.jp>
Diff between MIRDD versions 0.1.0 dated 2026-03-19 and 0.2.2 dated 2026-04-21
DESCRIPTION | 34 +-- MD5 | 14 + R/MIRDD-package.R |only R/MIRDD.R | 434 ++++++++++++++++++++++------------------ R/data.R |only build |only data |only man/LudwigMiller2007Modified.Rd |only man/MIRDD-package.Rd |only man/MIdiagRDD.Rd | 67 ++++-- man/lee2008.Rd |only 11 files changed, 329 insertions(+), 220 deletions(-)
Title: Motif Discovery in Functional Data
Description: Efficiently implementing two complementary methodologies for discovering motifs in functional data: ProbKMA and FunBIalign.
Cremona and Chiaromonte (2023) "Probabilistic K-means with Local Alignment for Clustering and Motif Discovery in Functional Data" <doi:10.1080/10618600.2022.2156522> is a probabilistic K-means algorithm that leverages local alignment and fuzzy clustering to identify recurring patterns (candidate functional motifs) across and within curves, allowing different portions of the same curve to belong to different clusters. It includes a family of distances and a normalization to discover various motif types and learns motif lengths in a data-driven manner. It can also be used for local clustering of misaligned data.
Di Iorio, Cremona, and Chiaromonte (2023) "funBIalign: A Hierarchical Algorithm for Functional Motif Discovery Based on Mean Squared Residue Scores" <doi:10.48550/arXiv.2306.04254> applies hierarchical agglomerative clustering with a functional g [...truncated...]
Author: Marzia Angela Cremona [aut],
Francesca Chiaromonte [aut],
Jacopo Di Iorio [aut, cre],
Niccolo Feresini [aut],
Riccardo Lazzarini [aut]
Maintainer: Jacopo Di Iorio <jacopo.di.iorio@emory.edu>
Diff between funMoDisco versions 1.1.0 dated 2025-11-07 and 1.1.5 dated 2026-04-21
DESCRIPTION | 12 MD5 | 26 - NAMESPACE | 1 R/S4_constructor.R | 27 - R/S4_methods.R | 42 - R/discoverMotifs.R | 109 ++-- R/find_recommended_path.R | 2 R/funMoDisco-pkg.R | 1 R/motifs_search_plot.R | 909 +++++++++++++++++++++++++++----------- R/probKMA_silhouette_plot.R | 1 inst/doc/funMoDisco_vignette.pdf |binary man/discoverMotifs.Rd | 93 +-- man/motifs_search_plot.Rd | 8 vignettes/funMoDisco_vignette.Rmd | 29 - 14 files changed, 840 insertions(+), 420 deletions(-)
Title: Simulating Nonhomogeneous Poisson Point Processes
Description: Simulates events from one dimensional nonhomogeneous Poisson point processes (NHPPPs) as per Trikalinos and Sereda (2024, <doi:10.48550/arXiv.2402.00358> and 2024, <doi:10.1371/journal.pone.0311311>). Functions are based on three algorithms that provably sample from a target NHPPP: the time-transformation of a homogeneous Poisson process (of intensity one) via the inverse of the integrated intensity function (Cinlar E, "Theory of stochastic processes" (1975, ISBN:0486497996)); the generation of a Poisson number of order statistics from a fixed density function; and the thinning of a majorizing NHPPP via an acceptance-rejection scheme (Lewis PAW, Shedler, GS (1979) <doi:10.1002/nav.3800260304>).
Author: Thomas Trikalinos [aut, cre, cph] ,
Yuliia Sereda [aut]
Maintainer: Thomas Trikalinos <thomas_trikalinos@brown.edu>
Diff between nhppp versions 1.0.2 dated 2025-01-09 and 1.0.5 dated 2026-04-21
DESCRIPTION | 18 +++--- MD5 | 42 +++++++++------ NEWS.md | 8 ++ R/vdraw.R | 12 +++- R/vdraw_cumulative_intensity.R | 8 ++ R/vdraw_intensity.R | 4 + R/vdraw_intensity_step_regular_cpp.R | 10 +++ R/vdraw_intensity_step_regular_forcezt.R | 13 ++++ R/vdraw_sc_step_regular_cpp.R | 6 ++ R/vztdraw_intensity.R | 4 + R/vztdraw_intensity_step_regular.R | 16 +++++ R/vztdraw_sc_step_regular_cpp.R | 5 + build/vignette.rds |binary inst/doc/Gompertz_processes.R |only inst/doc/Gompertz_processes.Rmd |only inst/doc/Gompertz_processes.html |only inst/doc/Log_linear_times.html | 30 +++++------ inst/doc/Simple_des_model_cancer_natural_Hx.html | 7 +- inst/doc/Weibull_processes.R |only inst/doc/Weibull_processes.Rmd |only inst/doc/Weibull_processes.html |only tests/testthat/test-vdraw_sc_step_regular.R | 24 ++++++++ tests/testthat/test-vdraw_sc_step_regular_cpp.R | 27 ++++++++++ tests/testthat/test-vztdraw_intensity_step_regular.R | 51 ++++++++++++++++++- vignettes/Gompertz_processes.Rmd |only vignettes/Weibull_processes.Rmd |only 26 files changed, 230 insertions(+), 55 deletions(-)
Title: Extra Functionality for the 'xpose' Package
Description: Adding some at-present missing functionality, or functions
unlikely to be added to the base 'xpose' package. This includes some
diagnostic plots that have been missing in translation from 'xpose4',
but also some useful features that truly extend the capabilities of what
can be done with 'xpose'. These extensions include the concept of a set of
'xpose' objects, and diagnostics for likelihood-based models.
Author: John Prybylski [aut, cre, cph]
Maintainer: John Prybylski <jprybylski@gmail.com>
Diff between xpose.xtras versions 0.1.3 dated 2026-04-18 and 0.1.4 dated 2026-04-21
xpose.xtras-0.1.3/xpose.xtras/data/nlmixr2_m3.rda |only xpose.xtras-0.1.3/xpose.xtras/data/nlmixr2_warfarin.rda |only xpose.xtras-0.1.3/xpose.xtras/data/xpdb_nlmixr2.rda |only xpose.xtras-0.1.3/xpose.xtras/data/xpdb_nlmixr2_old.rda |only xpose.xtras-0.1.3/xpose.xtras/data/xpdb_nlmixr2_saem.rda |only xpose.xtras-0.1.3/xpose.xtras/man/nlmixr2_m3.Rd |only xpose.xtras-0.1.3/xpose.xtras/man/nlmixr2_warfarin.Rd |only xpose.xtras-0.1.3/xpose.xtras/man/xpdb_nlmixr2.Rd |only xpose.xtras-0.1.3/xpose.xtras/man/xpdb_nlmixr2_old.Rd |only xpose.xtras-0.1.4/xpose.xtras/DESCRIPTION | 6 xpose.xtras-0.1.4/xpose.xtras/MD5 | 79 +++--- xpose.xtras-0.1.4/xpose.xtras/NAMESPACE | 2 xpose.xtras-0.1.4/xpose.xtras/NEWS.md | 4 xpose.xtras-0.1.4/xpose.xtras/R/data.R | 120 ---------- xpose.xtras-0.1.4/xpose.xtras/R/diag_constants.R | 11 xpose.xtras-0.1.4/xpose.xtras/R/nlmixr2.R | 63 ++--- xpose.xtras-0.1.4/xpose.xtras/R/nlmixr_examples.R |only xpose.xtras-0.1.4/xpose.xtras/R/xset_diagram.R | 3 xpose.xtras-0.1.4/xpose.xtras/R/zzz.R | 7 xpose.xtras-0.1.4/xpose.xtras/data/pheno_base.rda |binary xpose.xtras-0.1.4/xpose.xtras/data/pheno_final.rda |binary xpose.xtras-0.1.4/xpose.xtras/data/pheno_saem.rda |binary xpose.xtras-0.1.4/xpose.xtras/data/pheno_set.rda |binary xpose.xtras-0.1.4/xpose.xtras/data/pkpd_m3.rda |binary xpose.xtras-0.1.4/xpose.xtras/data/vismo_dtmm.rda |binary xpose.xtras-0.1.4/xpose.xtras/data/vismo_pomod.rda |binary xpose.xtras-0.1.4/xpose.xtras/data/xpdb_set.rda |binary xpose.xtras-0.1.4/xpose.xtras/data/xpdb_x.rda |binary xpose.xtras-0.1.4/xpose.xtras/inst/doc/a02-xpose-sets.R | 16 - xpose.xtras-0.1.4/xpose.xtras/inst/doc/a02-xpose-sets.Rmd | 16 - xpose.xtras-0.1.4/xpose.xtras/inst/doc/a02-xpose-sets.html | 30 +- xpose.xtras-0.1.4/xpose.xtras/inst/doc/a03-useful_plots.html | 2 xpose.xtras-0.1.4/xpose.xtras/man/attach_nlmixr2.Rd | 49 ++-- xpose.xtras-0.1.4/xpose.xtras/man/backfill_nlmixr2_props.Rd | 5 xpose.xtras-0.1.4/xpose.xtras/man/derive_prm.Rd | 5 xpose.xtras-0.1.4/xpose.xtras/man/diagnose_constants.Rd | 6 xpose.xtras-0.1.4/xpose.xtras/man/diagram_lineage.Rd | 3 xpose.xtras-0.1.4/xpose.xtras/man/figures/README-m3_roc-1.png |binary xpose.xtras-0.1.4/xpose.xtras/man/nlmixr2_prm_associations.Rd | 5 xpose.xtras-0.1.4/xpose.xtras/man/nlmixr_example.Rd |only xpose.xtras-0.1.4/xpose.xtras/tests/testthat/helper-nlmixr2_examples.R |only xpose.xtras-0.1.4/xpose.xtras/tests/testthat/test-diag_constants.R | 8 xpose.xtras-0.1.4/xpose.xtras/tests/testthat/test-nlmixr2.R | 13 - xpose.xtras-0.1.4/xpose.xtras/tests/testthat/test-utils.R | 8 xpose.xtras-0.1.4/xpose.xtras/tests/testthat/test-xset_diagram.R | 1 xpose.xtras-0.1.4/xpose.xtras/tests/testthat/testdata |only xpose.xtras-0.1.4/xpose.xtras/vignettes/a02-xpose-sets.Rmd | 16 - 47 files changed, 187 insertions(+), 291 deletions(-)
Title: Taxonomic Distance and Phylogenetic Lineage Computation
Description: Computes phylogenetic distances between any two taxa using
hierarchical lineage data retrieved from The Taxonomicon
<http://taxonomicon.taxonomy.nl>, a comprehensive curated classification
of all life based on Systema Naturae 2000 (Brands, 1989
<http://taxonomicon.taxonomy.nl>). Given any two taxon names, retrieves their
full lineages, identifies the most recent common ancestor (MRCA),
and computes a dissimilarity index based on lineage depth. Outputs
native dist objects, enabling direct integration with the R statistical
ecosystem for hierarchical clustering, principal coordinate analysis (PCoA),
and multivariate ecological analyses. Supports individual distance queries,
pairwise distance matrices, clade filtering, and lineage utilities.
Author: Rodrigo Fonseca Villa [aut, cre]
Maintainer: Rodrigo Fonseca Villa <rodrigo03.villa@gmail.com>
Diff between taxodist versions 0.1.0 dated 2026-03-23 and 0.2.0 dated 2026-04-21
DESCRIPTION | 25 +-- MD5 | 42 +++-- NAMESPACE | 10 + NEWS.md | 35 ++++ R/distance.R | 69 ++++++++ R/fetch.R | 58 ++++++- R/utils.R | 221 +++++++++++++++++++++++++++ README.md | 17 +- build/vignette.rds |binary inst/WORDLIST | 39 +++- inst/doc/introduction.R | 57 +++++-- inst/doc/introduction.Rmd | 83 ++++++++-- inst/doc/introduction.html | 208 +++++++++++++++---------- inst/doc/statistical-applications.R |only inst/doc/statistical-applications.Rmd |only inst/doc/statistical-applications.html |only man/load_cache.Rd |only man/plot.taxodist_cluster.Rd |only man/plot.taxodist_ord.Rd |only man/print.taxodist_path.Rd |only man/save_cache.Rd |only man/summary.taxodist_ord.Rd |only man/taxo_cluster.Rd |only man/taxo_heatmap.Rd |only man/taxo_ordinate.Rd |only man/taxo_path.Rd |only tests/testthat/test-distance.R | 266 +++++++++++++++++++++++++++++++++ vignettes/introduction.Rmd | 83 ++++++++-- vignettes/statistical-applications.Rmd |only 29 files changed, 1048 insertions(+), 165 deletions(-)
Title: Discover Probable Duplicates in Plant Genetic Resources
Collections
Description: Provides functions to aid the identification of probable/possible
duplicates in Plant Genetic Resources (PGR) collections using
'passport databases' comprising of information records of each constituent
sample. These include methods for cleaning the data, creation of a
searchable Key Word in Context (KWIC) index of keywords associated with
sample records and the identification of nearly identical records with
similar information by fuzzy, phonetic and semantic matching of keywords.
Author: J. Aravind [aut, cre] ,
J. Radhamani [aut],
Kalyani Srinivasan [aut],
B. Ananda Subhash [aut],
Rishi Kumar Tyagi [aut],
ICAR-NBGPR [cph] ,
Maurice Aubrey [ctb] ,
Kevin Atkinson [ctb] ,
Lawrence Philips [ctb]
Maintainer: J. Aravind <j.aravind@icar.org.in>
Diff between PGRdup versions 0.2.4.0 dated 2025-12-14 and 0.3.0 dated 2026-04-21
DESCRIPTION | 16 - MD5 | 56 ++--- NEWS.md | 10 + R/AddProbDup.R | 2 R/DataClean.R | 2 R/DisProbDup.R | 2 R/DoubleMetaphone.R | 2 R/GN1000.R | 2 R/KWCounts.R | 2 R/KWIC.R | 2 R/MergeKW.R | 2 R/MergeProbDup.R | 2 R/PGRdup-package.R | 2 R/ParseProbDup.R | 2 R/ProbDup.R | 448 +++++++++++++++++++++++++++++----------------- R/ReconstructProbDup.R | 2 R/ReviewProbDup.R | 2 R/SplitProbDup.R | 2 R/ValidatePrimKey.R | 2 R/ViewProbDup.R | 2 R/globals.R | 5 R/print.KWIC.R | 2 R/print.ProbDup.R | 2 R/read.genesys.R | 2 R/xtra.R | 2 README.md | 22 +- build/partial.rdb |binary build/vignette.rds |binary inst/doc/Introduction.pdf |binary 29 files changed, 365 insertions(+), 232 deletions(-)
Title: Marginalized Count Regression Models
Description: Implementation of marginalized models for zero-inflated count data. The package provides tools to estimate marginalized count regression models for direct inference on the effect of covariates on the marginal mean of the outcome. The methods include the marginalized zero-inflated Poisson (MZIP) model described in Long et al. (2014) <doi:10.1002/sim.6293> and the marginalized zero- and N-inflated binomial (MZNIB) model, which extends marginalized modeling to fractional count outcomes with boundary inflation at zero and the upper limit.
Author: Zhengyang Zhou [aut, cre],
Dateng Li [aut],
David Huh [aut],
Minge Xie [aut],
Eun-Young Mun [aut]
Maintainer: Zhengyang Zhou <zhengyang.zhou@unthsc.edu>
Diff between mcount versions 1.0.0 dated 2022-03-11 and 1.0.1 dated 2026-04-21
mcount-1.0.0/mcount/R/data_example_documentation.R |only mcount-1.0.0/mcount/data/dat.pfi.RData |only mcount-1.0.1/mcount/DESCRIPTION | 37 mcount-1.0.1/mcount/MD5 | 26 mcount-1.0.1/mcount/NAMESPACE | 5 mcount-1.0.1/mcount/R/data-dat.pal.R |only mcount-1.0.1/mcount/R/data-dat.pfi.R |only mcount-1.0.1/mcount/R/main.R | 539 +++++++++++++- mcount-1.0.1/mcount/build |only mcount-1.0.1/mcount/data/dat.pal.rda |only mcount-1.0.1/mcount/data/dat.pfi.rda |only mcount-1.0.1/mcount/man/dat.pal.Rd |only mcount-1.0.1/mcount/man/dat.pfi.Rd | 51 - mcount-1.0.1/mcount/man/mzip.Rd | 13 mcount-1.0.1/mcount/man/mznib.Rd |only mcount-1.0.1/mcount/man/mznib_work_generic.Rd |only mcount-1.0.1/mcount/man/obtain_score_functions_generic.Rd |only mcount-1.0.1/mcount/man/print.mzip.Rd |only mcount-1.0.1/mcount/man/print.summary.mznib.Rd |only mcount-1.0.1/mcount/man/summary.mzip.Rd |only mcount-1.0.1/mcount/man/summary.mznib.Rd |only mcount-1.0.1/mcount/man/znib_generic.Rd |only 22 files changed, 630 insertions(+), 41 deletions(-)
Title: Package for Sequence Analysis by Local Score
Description: Functionalities for calculating the local score and calculating statistical relevance (p-value) to find a local Score in a sequence of given distribution (D. Robelin, S. Déjean, S. Mercier (2025) <doi:10.24072/pcjournal.650> ; S. Mercier and J.-J. Daudin (2001) <https://hal.science/hal-00714174/>) ; S. Karlin and S. Altschul (1990) <https://pmc.ncbi.nlm.nih.gov/articles/PMC53667/> ; S. Mercier, D. Cellier and F. Charlot (2003) <https://hal.science/hal-00937529v1/> ; A. Lagnoux, S. Mercier and P. Valois (2017) <doi:10.1093/bioinformatics/btw699> ).
Author: Sebastian Simon [aut],
Chris Verschelden [aut],
Charly Marty [aut],
David Robelin [aut, cre],
Sabine Mercier [aut],
Sebastien Dejean [aut],
The authors of Eigen the library for the included version of Eigen
[cph]
Maintainer: David Robelin <david.robelin@inrae.fr>
Diff between localScore versions 2.0.3 dated 2025-04-24 and 2.0.5 dated 2026-04-21
DESCRIPTION | 12 +- MD5 | 35 +++---- R/RcppExports.R | 3 R/data.R | 3 build/vignette.rds |binary inst/CITATION |only inst/doc/ExcursionsheightDocumentation.R | 74 ++++++++++++--- inst/doc/ExcursionsheightDocumentation.Rmd | 87 +++++++++++++++--- inst/doc/ExcursionsheightDocumentation.pdf |binary inst/doc/localScorePackageDocumentation.R | 110 ++++++++++++++--------- inst/doc/localScorePackageDocumentation.Rmd | 127 +++++++++++++++++---------- inst/doc/localScorePackageDocumentation.pdf |binary man/SJSyndrome.Rd | 3 man/daudin.Rd | 3 src/function_wrapper.cpp | 71 ++++++++------- src/localScoreC.cpp | 2 src/pValueMethods.cpp | 5 - vignettes/ExcursionsheightDocumentation.Rmd | 87 +++++++++++++++--- vignettes/localScorePackageDocumentation.Rmd | 127 +++++++++++++++++---------- 19 files changed, 515 insertions(+), 234 deletions(-)
Title: Introduction to Sports Analytics using R (ISAR) Data
Description: We provide data sets used in the textbook "Introduction to Sports Analytics using R" by Elmore and Urbaczweski (2025).
Author: Ryan Elmore [cre, aut]
Maintainer: Ryan Elmore <Ryan.Elmore@du.edu>
Diff between ISAR versions 1.0.3 dated 2026-03-26 and 1.0.5 dated 2026-04-21
DESCRIPTION | 6 +++--- MD5 | 12 +++++++++--- R/draftkings-bos-buf.R |only R/draftkings-edm-col.R | 2 +- R/masters_2025.R |only data/dk_bos_buf.rda |only data/masters_2025.rda |only man/dk_bos_buf.Rd |only man/dk_edm_col.Rd | 2 +- man/masters_2025.Rd |only 10 files changed, 14 insertions(+), 8 deletions(-)
Title: Seed Germination Indices and Curve Fitting
Description: Provides functions to compute various germination indices
such as germinability, median germination time, mean germination time,
mean germination rate, speed of germination, Timson's index,
germination value, coefficient of uniformity of germination,
uncertainty of germination process, synchrony of germination etc. from
germination count data. Includes functions for fitting cumulative seed
germination curves using four-parameter hill function and computation
of associated parameters. See the vignette for more, including full
list of citations for the methods implemented.
Author: J. Aravind [aut, cre] ,
S. Vimala Devi [aut],
J. Radhamani [aut],
Sherry Rachel Jacob [aut],
Kalyani Srinivasan [aut],
ICAR-NBGPR [cph]
Maintainer: J. Aravind <j.aravind@icar.org.in>
Diff between germinationmetrics versions 0.1.9 dated 2025-12-14 and 0.1.10 dated 2026-04-21
DESCRIPTION | 10 +++--- MD5 | 72 ++++++++++++++++++++++----------------------- NEWS.md | 9 +++++ R/CUGerm.R | 2 - R/EmergenceRateIndex.R | 2 - R/FirstGermTime.R | 2 - R/FourPHFfit.R | 8 ++--- R/FourPHFfit.bulk.R | 2 - R/GermIndex.R | 2 - R/GermPercent.R | 2 - R/GermSpeed.R | 2 - R/GermSynchrony.R | 2 - R/GermValue.R | 2 - R/MeanGermPercent.R | 2 - R/MeanGermRate.R | 2 - R/MeanGermTime.R | 2 - R/TimsonsIndex.R | 2 - R/WeightGermPercent.R | 2 - R/gcdata.R | 2 - R/geom_line2.R | 2 - R/germination.indices.R | 2 - R/globals.R | 2 - R/plot.FourPHFfit.R | 2 - R/plot.FourPHFfit.bulk.R | 2 - R/t50.R | 11 +++--- R/xtra.R | 2 - README.md | 19 ++++++----- build/partial.rdb |binary build/stage23.rdb |binary build/vignette.rds |binary inst/doc/Introduction.Rmd | 66 ++++++++++++++++++++++++++--------------- inst/doc/Introduction.pdf |binary man/FourPHFfit.Rd | 6 +-- man/FourPHFfit.bulk.Rd | 6 +-- man/t50.Rd | 9 +++-- vignettes/Indices.rda |binary vignettes/Introduction.Rmd | 66 ++++++++++++++++++++++++++--------------- 37 files changed, 188 insertions(+), 136 deletions(-)
More information about germinationmetrics at CRAN
Permanent link
Title: An Interface to 'SUNDIALS' Ordinary Differential Equation (ODE)
Solvers
Description: Provides a way to call the functions in 'SUNDIALS' C ODE solving library (<https://computing.llnl.gov/projects/sundials>). Currently the serial version of ODE solver, 'CVODE', sensitivity calculator 'CVODES' and differential algebraic solver 'IDA' from the 'SUNDIALS' library are implemented. The package requires ODE to be written as an 'R' or 'Rcpp' function and does not require the 'SUNDIALS' library to be installed on the local machine.
Author: Satyaprakash Nayak [aut, cre, cph] ,
Lawrence Livermore National Security [cph],
Southern Methodist University [cph]
Maintainer: Satyaprakash Nayak <satyaprakash.nayak@gmail.com>
This is a re-admission after prior archival of version 0.1.6.2 dated 2025-01-13
Diff between sundialr versions 0.1.6.2 dated 2025-01-13 and 0.1.7 dated 2026-04-21
sundialr-0.1.6.2/sundialr/NEWS |only sundialr-0.1.6.2/sundialr/src/sundials-mod-7.2.1.tar.gz |only sundialr-0.1.7/sundialr/DESCRIPTION | 14 sundialr-0.1.7/sundialr/MD5 | 244 +++--- sundialr-0.1.7/sundialr/NEWS.md |only sundialr-0.1.7/sundialr/README.md | 4 sundialr-0.1.7/sundialr/build/vignette.rds |binary sundialr-0.1.7/sundialr/cleanup | 3 sundialr-0.1.7/sundialr/configure.ac | 10 sundialr-0.1.7/sundialr/inst/doc/my-vignette.html | 11 sundialr-0.1.7/sundialr/inst/include/arkode/arkode.h | 79 +- sundialr-0.1.7/sundialr/inst/include/arkode/arkode.hpp |only sundialr-0.1.7/sundialr/inst/include/arkode/arkode_arkstep.h | 389 ---------- sundialr-0.1.7/sundialr/inst/include/arkode/arkode_arkstep.hpp |only sundialr-0.1.7/sundialr/inst/include/arkode/arkode_arkstep_deprecated.h |only sundialr-0.1.7/sundialr/inst/include/arkode/arkode_bandpre.h | 14 sundialr-0.1.7/sundialr/inst/include/arkode/arkode_bbdpre.h | 13 sundialr-0.1.7/sundialr/inst/include/arkode/arkode_butcher.h | 25 sundialr-0.1.7/sundialr/inst/include/arkode/arkode_butcher_dirk.h | 24 sundialr-0.1.7/sundialr/inst/include/arkode/arkode_butcher_erk.h | 28 sundialr-0.1.7/sundialr/inst/include/arkode/arkode_erkstep.h | 208 ----- sundialr-0.1.7/sundialr/inst/include/arkode/arkode_erkstep.hpp |only sundialr-0.1.7/sundialr/inst/include/arkode/arkode_erkstep_deprecated.h |only sundialr-0.1.7/sundialr/inst/include/arkode/arkode_forcingstep.h | 5 sundialr-0.1.7/sundialr/inst/include/arkode/arkode_forcingstep.hpp |only sundialr-0.1.7/sundialr/inst/include/arkode/arkode_ls.h | 7 sundialr-0.1.7/sundialr/inst/include/arkode/arkode_lsrkstep.h | 30 sundialr-0.1.7/sundialr/inst/include/arkode/arkode_lsrkstep.hpp |only sundialr-0.1.7/sundialr/inst/include/arkode/arkode_mristep.h | 242 ------ sundialr-0.1.7/sundialr/inst/include/arkode/arkode_mristep.hpp |only sundialr-0.1.7/sundialr/inst/include/arkode/arkode_mristep_deprecated.h |only sundialr-0.1.7/sundialr/inst/include/arkode/arkode_splittingstep.h | 26 sundialr-0.1.7/sundialr/inst/include/arkode/arkode_splittingstep.hpp |only sundialr-0.1.7/sundialr/inst/include/arkode/arkode_sprk.h | 29 sundialr-0.1.7/sundialr/inst/include/arkode/arkode_sprkstep.h | 83 -- sundialr-0.1.7/sundialr/inst/include/arkode/arkode_sprkstep.hpp |only sundialr-0.1.7/sundialr/inst/include/arkode/arkode_sprkstep_deprecated.h |only sundialr-0.1.7/sundialr/inst/include/cvode/cvode.h | 46 - sundialr-0.1.7/sundialr/inst/include/cvode/cvode.hpp |only sundialr-0.1.7/sundialr/inst/include/cvode/cvode_bandpre.h | 12 sundialr-0.1.7/sundialr/inst/include/cvode/cvode_bbdpre.h | 13 sundialr-0.1.7/sundialr/inst/include/cvode/cvode_diag.h | 10 sundialr-0.1.7/sundialr/inst/include/cvode/cvode_ls.h | 15 sundialr-0.1.7/sundialr/inst/include/cvode/cvode_proj.h | 5 sundialr-0.1.7/sundialr/inst/include/cvodes/cvodes.h | 130 ++- sundialr-0.1.7/sundialr/inst/include/cvodes/cvodes.hpp |only sundialr-0.1.7/sundialr/inst/include/cvodes/cvodes_bandpre.h | 12 sundialr-0.1.7/sundialr/inst/include/cvodes/cvodes_bbdpre.h | 13 sundialr-0.1.7/sundialr/inst/include/cvodes/cvodes_diag.h | 10 sundialr-0.1.7/sundialr/inst/include/cvodes/cvodes_ls.h | 40 - sundialr-0.1.7/sundialr/inst/include/cvodes/cvodes_proj.h | 5 sundialr-0.1.7/sundialr/inst/include/ida/ida.h | 52 + sundialr-0.1.7/sundialr/inst/include/ida/ida.hpp |only sundialr-0.1.7/sundialr/inst/include/ida/ida_bbdpre.h | 13 sundialr-0.1.7/sundialr/inst/include/ida/ida_ls.h | 15 sundialr-0.1.7/sundialr/inst/include/idas/idas.h | 148 ++- sundialr-0.1.7/sundialr/inst/include/idas/idas.hpp |only sundialr-0.1.7/sundialr/inst/include/idas/idas_bbdpre.h | 13 sundialr-0.1.7/sundialr/inst/include/idas/idas_ls.h | 40 - sundialr-0.1.7/sundialr/inst/include/kinsol/kinsol.h | 40 - sundialr-0.1.7/sundialr/inst/include/kinsol/kinsol.hpp |only sundialr-0.1.7/sundialr/inst/include/kinsol/kinsol_bbdpre.h | 13 sundialr-0.1.7/sundialr/inst/include/kinsol/kinsol_ls.h | 17 sundialr-0.1.7/sundialr/inst/include/nvector/nvector_manyvector.h | 18 sundialr-0.1.7/sundialr/inst/include/nvector/nvector_serial.h | 10 sundialr-0.1.7/sundialr/inst/include/sunadaptcontroller/sunadaptcontroller_imexgus.h | 20 sundialr-0.1.7/sundialr/inst/include/sunadaptcontroller/sunadaptcontroller_mrihtol.h | 31 sundialr-0.1.7/sundialr/inst/include/sunadaptcontroller/sunadaptcontroller_soderlind.h | 27 sundialr-0.1.7/sundialr/inst/include/sunadjointcheckpointscheme |only sundialr-0.1.7/sundialr/inst/include/sundials/LICENSE | 4 sundialr-0.1.7/sundialr/inst/include/sundials/priv/sundials_context_impl.h | 6 sundialr-0.1.7/sundialr/inst/include/sundials/priv/sundials_errors_impl.h | 18 sundialr-0.1.7/sundialr/inst/include/sundials/priv/sundials_logger_macros.h |only sundialr-0.1.7/sundialr/inst/include/sundials/sundials_adaptcontroller.h | 26 sundialr-0.1.7/sundialr/inst/include/sundials/sundials_adaptcontroller.hpp |only sundialr-0.1.7/sundialr/inst/include/sundials/sundials_adjointcheckpointscheme.h |only sundialr-0.1.7/sundialr/inst/include/sundials/sundials_adjointcheckpointscheme.hpp |only sundialr-0.1.7/sundialr/inst/include/sundials/sundials_adjointstepper.h |only sundialr-0.1.7/sundialr/inst/include/sundials/sundials_adjointstepper.hpp |only sundialr-0.1.7/sundialr/inst/include/sundials/sundials_band.h | 5 sundialr-0.1.7/sundialr/inst/include/sundials/sundials_base.hpp | 45 - sundialr-0.1.7/sundialr/inst/include/sundials/sundials_classview.hpp |only sundialr-0.1.7/sundialr/inst/include/sundials/sundials_config.h | 27 sundialr-0.1.7/sundialr/inst/include/sundials/sundials_context.h | 11 sundialr-0.1.7/sundialr/inst/include/sundials/sundials_context.hpp | 54 - sundialr-0.1.7/sundialr/inst/include/sundials/sundials_convertibleto.hpp | 23 sundialr-0.1.7/sundialr/inst/include/sundials/sundials_core.h | 9 sundialr-0.1.7/sundialr/inst/include/sundials/sundials_core.hpp | 5 sundialr-0.1.7/sundialr/inst/include/sundials/sundials_dense.h | 5 sundialr-0.1.7/sundialr/inst/include/sundials/sundials_direct.h | 5 sundialr-0.1.7/sundialr/inst/include/sundials/sundials_domeigestimator.h |only sundialr-0.1.7/sundialr/inst/include/sundials/sundials_domeigestimator.hpp |only sundialr-0.1.7/sundialr/inst/include/sundials/sundials_errors.h | 21 sundialr-0.1.7/sundialr/inst/include/sundials/sundials_futils.h | 24 sundialr-0.1.7/sundialr/inst/include/sundials/sundials_iterative.h | 47 - sundialr-0.1.7/sundialr/inst/include/sundials/sundials_linearsolver.h | 48 - sundialr-0.1.7/sundialr/inst/include/sundials/sundials_linearsolver.hpp | 15 sundialr-0.1.7/sundialr/inst/include/sundials/sundials_logger.h | 14 sundialr-0.1.7/sundialr/inst/include/sundials/sundials_logger.hpp |only sundialr-0.1.7/sundialr/inst/include/sundials/sundials_math.h | 100 ++ sundialr-0.1.7/sundialr/inst/include/sundials/sundials_matrix.h | 21 sundialr-0.1.7/sundialr/inst/include/sundials/sundials_matrix.hpp | 14 sundialr-0.1.7/sundialr/inst/include/sundials/sundials_memory.h | 31 sundialr-0.1.7/sundialr/inst/include/sundials/sundials_memory.hpp | 14 sundialr-0.1.7/sundialr/inst/include/sundials/sundials_mpi_types.h | 5 sundialr-0.1.7/sundialr/inst/include/sundials/sundials_nonlinearsolver.h | 32 sundialr-0.1.7/sundialr/inst/include/sundials/sundials_nonlinearsolver.hpp | 9 sundialr-0.1.7/sundialr/inst/include/sundials/sundials_nvector.h | 70 + sundialr-0.1.7/sundialr/inst/include/sundials/sundials_nvector.hpp | 19 sundialr-0.1.7/sundialr/inst/include/sundials/sundials_profiler.h | 6 sundialr-0.1.7/sundialr/inst/include/sundials/sundials_profiler.hpp | 17 sundialr-0.1.7/sundialr/inst/include/sundials/sundials_stepper.h | 51 + sundialr-0.1.7/sundialr/inst/include/sundials/sundials_stepper.hpp |only sundialr-0.1.7/sundialr/inst/include/sundials/sundials_types.h | 63 + sundialr-0.1.7/sundialr/inst/include/sundials/sundials_types_deprecated.h | 5 sundialr-0.1.7/sundialr/inst/include/sundials/sundials_version.h | 5 sundialr-0.1.7/sundialr/inst/include/sundials_err_handler.h |only sundialr-0.1.7/sundialr/inst/include/sundomeigest |only sundialr-0.1.7/sundialr/inst/include/sunlinsol/sunlinsol_band.h | 10 sundialr-0.1.7/sundialr/inst/include/sunlinsol/sunlinsol_dense.h | 10 sundialr-0.1.7/sundialr/inst/include/sunlinsol/sunlinsol_pcg.h | 10 sundialr-0.1.7/sundialr/inst/include/sunlinsol/sunlinsol_spbcgs.h | 14 sundialr-0.1.7/sundialr/inst/include/sunlinsol/sunlinsol_spfgmr.h | 16 sundialr-0.1.7/sundialr/inst/include/sunlinsol/sunlinsol_spgmr.h | 14 sundialr-0.1.7/sundialr/inst/include/sunlinsol/sunlinsol_sptfqmr.h | 14 sundialr-0.1.7/sundialr/inst/include/sunmatrix/sunmatrix_band.h | 15 sundialr-0.1.7/sundialr/inst/include/sunmatrix/sunmatrix_dense.h | 15 sundialr-0.1.7/sundialr/inst/include/sunmatrix/sunmatrix_sparse.h | 19 sundialr-0.1.7/sundialr/inst/include/sunmemory/sunmemory_system.h | 11 sundialr-0.1.7/sundialr/inst/include/sunnonlinsol/sunnonlinsol_fixedpoint.h | 7 sundialr-0.1.7/sundialr/inst/include/sunnonlinsol/sunnonlinsol_newton.h | 5 sundialr-0.1.7/sundialr/src/Makevars.in | 2 sundialr-0.1.7/sundialr/src/cvode.cpp | 4 sundialr-0.1.7/sundialr/src/cvodes.cpp | 4 sundialr-0.1.7/sundialr/src/cvsolve.cpp | 4 sundialr-0.1.7/sundialr/src/ida.cpp | 5 sundialr-0.1.7/sundialr/src/scripts/sundials_download.sh | 4 sundialr-0.1.7/sundialr/src/sundials-mod-7.6.0.tar.gz |only sundialr-0.1.7/sundialr/tools/cmake_call.sh | 116 ++ sundialr-0.1.7/sundialr/tools/remove_static_libs.sh |only 140 files changed, 1850 insertions(+), 1579 deletions(-)
Title: Ordinal Data Clustering, Co-Clustering and Classification
Description: Ordinal data classification, clustering and co-clustering using model-based approach with the BOS (Binary Ordinal Search) distribution for ordinal data (Christophe Biernacki and Julien Jacques (2016) <doi:10.1007/s11222-015-9585-2>).
Author: Margot Selosse [aut],
Julien Jacques [aut, cre],
Christophe Biernacki [aut]
Maintainer: Julien Jacques <julien.jacques@univ-lyon2.fr>
This is a re-admission after prior archival of version 1.3.5 dated 2020-11-19
Diff between ordinalClust versions 1.3.5 dated 2020-11-19 and 1.3.5.1 dated 2026-04-21
DESCRIPTION | 27 MD5 | 30 - R/bosplot.R | 7 build/vignette.rds |binary inst/doc/ordinalClust.R | 480 ++++++++-------- inst/doc/ordinalClust.html | 1198 ++++++++++++++++++++++++----------------- man/bosclassif.Rd | 58 - man/bosclust.Rd | 43 - man/boscoclust.Rd | 52 - man/pejSim.Rd | 28 src/Bos.cpp | 97 ++- src/ClassificationMContext.cpp | 14 src/ClusteringContext.cpp | 24 src/Makevars | 9 src/ordinalClust.cpp | 83 ++ vignettes/bibliography.bib | 12 16 files changed, 1189 insertions(+), 973 deletions(-)
Title: Dose Response Curve Fitting and Mixture Toxicity Assessment
Description: Curve Fitting of monotonic(sigmoidal) & non-monotonic(J-shaped)
dose-response data. Predicting mixture toxicity based on reference
models such as 'concentration addition', 'independent action', and 'generalized
concentration addition'.
Author: Xiangwei Zhu [aut, cre]
Maintainer: Xiangwei Zhu <xwzhunc@gmail.com>
Diff between mixtox versions 1.4.0 dated 2022-06-20 and 1.5.0 dated 2026-04-21
DESCRIPTION | 18 - MD5 | 103 +++---- NAMESPACE | 16 - R/BMD.R | 296 ++++++++++----------- R/CEx.R | 140 +++++----- R/ECx.R | 187 ++++++------- R/NOEC.R | 258 +++++++++--------- R/caPred.R | 174 ++++++------ R/curveFit.R | 444 +++++++++++++++++-------------- R/ecaPred.R | 202 +++++++------- R/eiaPred.R | 126 ++++----- R/figPlot.R | 92 +++--- R/gcaHill.R | 200 +++++++------- R/gcaPred.R | 361 +++++++++++++------------ R/getCI.R | 330 +++++++++++------------ R/iaPred.R | 248 ++++++++--------- R/jacobian.R | 168 ++++++------ R/nmECx.R | 156 +++++------ R/qq4res.R | 22 - R/readModel.R | 36 +- R/readTox.R | 4 R/showEq.R | 85 +++--- R/tuneFit.R | 528 +++++++++++++++++++------------------ R/unidTab.R | 752 +++++++++++++++++++++++++++--------------------------- README.md |only data/staval.rda |binary man/BMD.Rd | 114 ++++---- man/CEx.Rd | 118 ++++---- man/DTcv.Rd | 66 ++-- man/ECx.Rd | 134 ++++----- man/NOEC.Rd | 148 +++++----- man/antibiotox.Rd | 134 ++++----- man/caPred.Rd | 220 +++++++-------- man/curveFit.Rd | 438 ++++++++++++++++--------------- man/cytotox.Rd | 128 ++++----- man/ecaPred.Rd | 124 ++++---- man/eiaPred.Rd | 166 +++++------ man/figPlot.Rd | 76 ++--- man/gcaHill.Rd | 200 +++++++------- man/gcaPred.Rd | 202 +++++++------- man/getCI.Rd | 88 +++--- man/hormesis.Rd | 110 +++---- man/iaPred.Rd | 230 ++++++++-------- man/jacobian.Rd | 70 ++--- man/mixtox.Rd | 132 ++++----- man/nmECx.Rd | 112 ++++---- man/qq4res.Rd | 66 ++-- man/readModel.Rd | 62 ++-- man/readTox.Rd | 116 ++++---- man/showEq.Rd | 114 ++++---- man/staval.Rd | 69 ++-- man/tuneFit.Rd | 198 +++++++------- man/unidTab.Rd | 172 ++++++------ 53 files changed, 4410 insertions(+), 4343 deletions(-)
Title: Bayesian Tree Ensembles for Survival Analysis and Causal
Inference
Description: Bayesian regression tree ensembles for survival analysis
and causal inference. Implements BART, DART, Bayesian Causal
Forests (BCF), and Horseshoe Forest models. Supports
right-censored and interval-censored survival outcomes via
accelerated failure time (AFT) formulations. Designed for
high-dimensional prediction and heterogeneous treatment effect
estimation.
Author: Tijn Jacobs [aut, cre]
Maintainer: Tijn Jacobs <t.jacobs@vu.nl>
Diff between ShrinkageTrees versions 1.2.0 dated 2026-02-26 and 2.0.2 dated 2026-04-21
ShrinkageTrees-1.2.0/ShrinkageTrees/R/censored_info.R |only ShrinkageTrees-1.2.0/ShrinkageTrees/man/censored_info.Rd |only ShrinkageTrees-1.2.0/ShrinkageTrees/src/Makevars |only ShrinkageTrees-1.2.0/ShrinkageTrees/src/bd.cpp |only ShrinkageTrees-1.2.0/ShrinkageTrees/src/bd.h |only ShrinkageTrees-2.0.2/ShrinkageTrees/DESCRIPTION | 40 ShrinkageTrees-2.0.2/ShrinkageTrees/LICENSE | 3 ShrinkageTrees-2.0.2/ShrinkageTrees/MD5 | 173 +- ShrinkageTrees-2.0.2/ShrinkageTrees/NAMESPACE | 26 ShrinkageTrees-2.0.2/ShrinkageTrees/NEWS.md |only ShrinkageTrees-2.0.2/ShrinkageTrees/R/CausalHorseForest.R | 518 +++++- ShrinkageTrees-2.0.2/ShrinkageTrees/R/CausalShrinkageForest.R | 592 ++++++- ShrinkageTrees-2.0.2/ShrinkageTrees/R/HorseTrees.R | 385 ++++ ShrinkageTrees-2.0.2/ShrinkageTrees/R/RcppExports.R | 8 ShrinkageTrees-2.0.2/ShrinkageTrees/R/ShrinkageTrees-package.R |only ShrinkageTrees-2.0.2/ShrinkageTrees/R/ShrinkageTrees.R | 411 ++++ ShrinkageTrees-2.0.2/ShrinkageTrees/R/SurvivalWrappers.R | 845 ++++++++-- ShrinkageTrees-2.0.2/ShrinkageTrees/R/bayesian_bootstrap.R |only ShrinkageTrees-2.0.2/ShrinkageTrees/R/constructors.R |only ShrinkageTrees-2.0.2/ShrinkageTrees/R/data-documentation.R | 119 + ShrinkageTrees-2.0.2/ShrinkageTrees/R/helpers.R |only ShrinkageTrees-2.0.2/ShrinkageTrees/R/methods.R |only ShrinkageTrees-2.0.2/ShrinkageTrees/R/plots.R |only ShrinkageTrees-2.0.2/ShrinkageTrees/README.md | 101 - ShrinkageTrees-2.0.2/ShrinkageTrees/build/partial.rdb |binary ShrinkageTrees-2.0.2/ShrinkageTrees/build/vignette.rds |only ShrinkageTrees-2.0.2/ShrinkageTrees/data/ovarian.rda |only ShrinkageTrees-2.0.2/ShrinkageTrees/data/ovarian_truth.rda |only ShrinkageTrees-2.0.2/ShrinkageTrees/demo/00Index | 1 ShrinkageTrees-2.0.2/ShrinkageTrees/demo/pdac_analysis.R | 1 ShrinkageTrees-2.0.2/ShrinkageTrees/inst/CITATION | 6 ShrinkageTrees-2.0.2/ShrinkageTrees/inst/doc |only ShrinkageTrees-2.0.2/ShrinkageTrees/man/CausalHorseForest.Rd | 86 - ShrinkageTrees-2.0.2/ShrinkageTrees/man/CausalShrinkageForest.Rd | 109 + ShrinkageTrees-2.0.2/ShrinkageTrees/man/HorseTrees.Rd | 75 ShrinkageTrees-2.0.2/ShrinkageTrees/man/ShrinkageTrees-package.Rd |only ShrinkageTrees-2.0.2/ShrinkageTrees/man/ShrinkageTrees.Rd | 93 - ShrinkageTrees-2.0.2/ShrinkageTrees/man/SurvivalBART.Rd | 102 + ShrinkageTrees-2.0.2/ShrinkageTrees/man/SurvivalBCF.Rd | 121 + ShrinkageTrees-2.0.2/ShrinkageTrees/man/SurvivalDART.Rd | 102 + ShrinkageTrees-2.0.2/ShrinkageTrees/man/SurvivalShrinkageBCF.Rd | 118 + ShrinkageTrees-2.0.2/ShrinkageTrees/man/as.mcmc.list.ShrinkageTrees.Rd |only ShrinkageTrees-2.0.2/ShrinkageTrees/man/bayesian_bootstrap_ate.Rd |only ShrinkageTrees-2.0.2/ShrinkageTrees/man/ovarian.Rd |only ShrinkageTrees-2.0.2/ShrinkageTrees/man/ovarian_truth.Rd |only ShrinkageTrees-2.0.2/ShrinkageTrees/man/plot.CausalShrinkageForest.Rd |only ShrinkageTrees-2.0.2/ShrinkageTrees/man/plot.ShrinkageTrees.Rd |only ShrinkageTrees-2.0.2/ShrinkageTrees/man/plot.ShrinkageTreesPrediction.Rd |only ShrinkageTrees-2.0.2/ShrinkageTrees/man/predict.CausalShrinkageForest.Rd |only ShrinkageTrees-2.0.2/ShrinkageTrees/man/predict.ShrinkageTrees.Rd |only ShrinkageTrees-2.0.2/ShrinkageTrees/man/print.CausalShrinkageForest.Rd |only ShrinkageTrees-2.0.2/ShrinkageTrees/man/print.CausalShrinkageForestPrediction.Rd |only ShrinkageTrees-2.0.2/ShrinkageTrees/man/print.ShrinkageTrees.Rd |only ShrinkageTrees-2.0.2/ShrinkageTrees/man/print.ShrinkageTreesPrediction.Rd |only ShrinkageTrees-2.0.2/ShrinkageTrees/man/print.summary.CausalShrinkageForest.Rd |only ShrinkageTrees-2.0.2/ShrinkageTrees/man/print.summary.CausalShrinkageForestPrediction.Rd |only ShrinkageTrees-2.0.2/ShrinkageTrees/man/print.summary.ShrinkageTrees.Rd |only ShrinkageTrees-2.0.2/ShrinkageTrees/man/print.summary.ShrinkageTreesPrediction.Rd |only ShrinkageTrees-2.0.2/ShrinkageTrees/man/summary.CausalShrinkageForest.Rd |only ShrinkageTrees-2.0.2/ShrinkageTrees/man/summary.CausalShrinkageForestPrediction.Rd |only ShrinkageTrees-2.0.2/ShrinkageTrees/man/summary.ShrinkageTrees.Rd |only ShrinkageTrees-2.0.2/ShrinkageTrees/man/summary.ShrinkageTreesPrediction.Rd |only ShrinkageTrees-2.0.2/ShrinkageTrees/src/CausalHorseForest.cpp | 168 + ShrinkageTrees-2.0.2/ShrinkageTrees/src/Forest.cpp | 13 ShrinkageTrees-2.0.2/ShrinkageTrees/src/Forest.h | 7 ShrinkageTrees-2.0.2/ShrinkageTrees/src/ForestEngine.h | 27 ShrinkageTrees-2.0.2/ShrinkageTrees/src/Functions.cpp | 112 - ShrinkageTrees-2.0.2/ShrinkageTrees/src/Functions.h | 50 ShrinkageTrees-2.0.2/ShrinkageTrees/src/HorseTrees.cpp | 41 ShrinkageTrees-2.0.2/ShrinkageTrees/src/HorseTrees.h | 1 ShrinkageTrees-2.0.2/ShrinkageTrees/src/Info.h | 41 ShrinkageTrees-2.0.2/ShrinkageTrees/src/Information.cpp | 49 ShrinkageTrees-2.0.2/ShrinkageTrees/src/Information.h | 11 ShrinkageTrees-2.0.2/ShrinkageTrees/src/OuterGibbsFunctions.cpp | 74 ShrinkageTrees-2.0.2/ShrinkageTrees/src/OuterGibbsFunctions.h | 24 ShrinkageTrees-2.0.2/ShrinkageTrees/src/Prerequisites.h | 19 ShrinkageTrees-2.0.2/ShrinkageTrees/src/Random.h | 3 ShrinkageTrees-2.0.2/ShrinkageTrees/src/RcppExports.cpp | 25 ShrinkageTrees-2.0.2/ShrinkageTrees/src/ScaleMixture.cpp | 25 ShrinkageTrees-2.0.2/ShrinkageTrees/src/ScaleMixture.h | 26 ShrinkageTrees-2.0.2/ShrinkageTrees/src/StanBirthDeath.cpp |only ShrinkageTrees-2.0.2/ShrinkageTrees/src/StanBirthDeath.h |only ShrinkageTrees-2.0.2/ShrinkageTrees/src/StanForest.cpp | 317 +-- ShrinkageTrees-2.0.2/ShrinkageTrees/src/StanForest.h | 196 +- ShrinkageTrees-2.0.2/ShrinkageTrees/src/StanForestFunctions.cpp | 769 ++++----- ShrinkageTrees-2.0.2/ShrinkageTrees/src/StanForestFunctions.h | 127 + ShrinkageTrees-2.0.2/ShrinkageTrees/src/StanTree.cpp | 722 +++----- ShrinkageTrees-2.0.2/ShrinkageTrees/src/StanTree.h | 186 +- ShrinkageTrees-2.0.2/ShrinkageTrees/src/StanTreeFunctions.cpp | 60 ShrinkageTrees-2.0.2/ShrinkageTrees/src/StanTreeFunctions.h | 21 ShrinkageTrees-2.0.2/ShrinkageTrees/src/Tree.cpp | 25 ShrinkageTrees-2.0.2/ShrinkageTrees/src/Tree.h | 1 ShrinkageTrees-2.0.2/ShrinkageTrees/src/TreeModifications.cpp | 93 - ShrinkageTrees-2.0.2/ShrinkageTrees/src/probit-HorseTrees.cpp | 2 ShrinkageTrees-2.0.2/ShrinkageTrees/src/probit-HorseTrees.h | 1 ShrinkageTrees-2.0.2/ShrinkageTrees/tests/testthat.R | 2 ShrinkageTrees-2.0.2/ShrinkageTrees/tests/testthat/test-CausalHorseForest.R | 196 ++ ShrinkageTrees-2.0.2/ShrinkageTrees/tests/testthat/test-CausalShrinkageTrees.R | 353 ++++ ShrinkageTrees-2.0.2/ShrinkageTrees/tests/testthat/test-HorseTrees.R | 248 ++ ShrinkageTrees-2.0.2/ShrinkageTrees/tests/testthat/test-ShrinkageTrees.R | 139 - ShrinkageTrees-2.0.2/ShrinkageTrees/tests/testthat/test-SurvivalBART.R | 2 ShrinkageTrees-2.0.2/ShrinkageTrees/tests/testthat/test-SurvivalBCF.R | 7 ShrinkageTrees-2.0.2/ShrinkageTrees/tests/testthat/test-SurvivalDART.R | 2 ShrinkageTrees-2.0.2/ShrinkageTrees/tests/testthat/test-SurvivalShrinkageBCF.R | 7 ShrinkageTrees-2.0.2/ShrinkageTrees/tests/testthat/test-high-dimensional.R |only ShrinkageTrees-2.0.2/ShrinkageTrees/tests/testthat/test-interval-censored.R |only ShrinkageTrees-2.0.2/ShrinkageTrees/tests/testthat/test-plots.R |only ShrinkageTrees-2.0.2/ShrinkageTrees/tests/testthat/test-predict.R |only ShrinkageTrees-2.0.2/ShrinkageTrees/vignettes |only 109 files changed, 5985 insertions(+), 2242 deletions(-)
More information about ShrinkageTrees at CRAN
Permanent link
Title: Learned Pattern Similarity and Representation for Time Series
Description: Learned Pattern Similarity (LPS) for time series, as described
in Baydogan and Runger (2016) <doi:10.1007/s10618-015-0425-y>.
Implements an approach to model the dependency structure in time
series that generalizes the concept of autoregression to local
auto-patterns. Generates a pattern-based representation of time
series along with a similarity measure called Learned Pattern
Similarity (LPS). Introduces a generalized autoregressive kernel.
This package adapts C code from the 'randomForest' package by
Andy Liaw and Matthew Wiener, itself based on original Fortran
code by Leo Breiman and Adele Cutler.
Author: Mustafa Gokce Baydogan [aut, cre],
Leo Breiman [ctb] ,
Adele Cutler [ctb] ,
Andy Liaw [ctb] ,
Matthew Wiener [ctb] ,
Merck & Co., Inc. [cph]
Maintainer: Mustafa Gokce Baydogan <baydoganmustafa@gmail.com>
This is a re-admission after prior archival of version 1.0-5 dated 2015-03-27
Diff between LPStimeSeries versions 1.0-5 dated 2015-03-27 and 1.1-0 dated 2026-04-21
DESCRIPTION | 54 ++- MD5 | 37 +- NAMESPACE | 10 R/computeSimilarity.R | 41 ++ R/discriminativePatterns.R |only R/learnPattern.default.R | 33 + R/predict.learnPattern.R | 51 +- R/tunelearnPattern.R | 11 R/visualizePattern.R | 103 ++++- build |only inst/CITATION | 29 - man/computeSimilarity.Rd | 15 man/discriminativePatterns.Rd |only man/learnPattern.Rd | 19 - man/predict.learnPattern.Rd | 10 man/tunelearnPattern.Rd | 16 src/Makevars |only src/Makevars.win |only src/init.c |only src/regTree.c | 338 +++++++------------ src/regrf.c | 729 ++++++++++++++++++++---------------------- src/rf.h | 78 +--- src/rng.h |only 23 files changed, 818 insertions(+), 756 deletions(-)
Title: Analysis of Simulation Studies Including Monte Carlo Error
Description: Summarise results from simulation studies and compute Monte
Carlo standard errors of commonly used summary statistics. This
package is modelled on the 'simsum' user-written command in 'Stata'
(White I.R., 2010
<https://www.stata-journal.com/article.html?article=st0200>), further
extending it with additional performance measures and functionality.
Author: Alessandro Gasparini [cre, aut] ,
Ian R. White [aut]
Maintainer: Alessandro Gasparini <alessandro@ellessenne.xyz>
Diff between rsimsum versions 0.13.0 dated 2024-03-03 and 0.13.1 dated 2026-04-21
DESCRIPTION | 54 MD5 | 141 +- NAMESPACE | 15 NEWS.md | 10 R/autoplot.multisimsum.R | 50 R/autoplot.simsum.R | 306 ++++- R/autoplot.summary.multisimsum.R | 29 R/autoplot.summary.simsum.R | 27 R/compact-method-column.R | 5 R/data.R | 2 R/deprecated-get_data.R | 41 R/dropbig.R | 39 R/kable.R | 28 R/multisimsum.R | 118 +- R/nsim.R | 4 R/performance.R | 234 +++ R/plot-types.R | 317 ++++- R/print.multisimsum.R | 21 R/print.simsum.R | 21 R/print.summary.multisimsum.R | 49 R/print.summary.simsum.R | 24 R/rsimsum-package.R | 30 R/simsum.R | 281 +++- R/summary.multisimsum.R | 38 R/summary.simsum.R | 38 R/tidy.R | 38 R/utils.R | 199 ++- README.md | 16 build/partial.rdb |binary build/vignette.rds |binary inst/doc/A-introduction.Rmd | 78 - inst/doc/A-introduction.html | 187 +-- inst/doc/B-relhaz.R | 4 inst/doc/B-relhaz.html | 19 inst/doc/C-plotting.html | 55 inst/doc/D-nlp.html | 9 inst/doc/E-custom-inputs.html | 7 inst/doc/F-rsimsumtidyverse.html | 15 man/MIsim.Rd | 2 man/figures/README-ba-1.png |binary man/figures/README-density-1.png |binary man/figures/README-hex-1.png |binary man/figures/README-lolly-1.png |binary man/figures/README-nlp-1.png |binary man/figures/README-ridgeline-1.png |binary man/figures/README-zipper-1.png |binary tests/testthat/test-#15.R | 160 ++ tests/testthat/test-#23.R | 69 - tests/testthat/test-#26.R | 87 + tests/testthat/test-#28.R | 55 tests/testthat/test-#31.R | 48 tests/testthat/test-#33.R | 59 - tests/testthat/test-#41.R | 40 tests/testthat/test-#45.R | 9 tests/testthat/test-#47.R | 10 tests/testthat/test-#55.R | 36 tests/testthat/test-#60.R |only tests/testthat/test-autoplot.R | 1765 ++++++++++++++++++++++++------ tests/testthat/test-ci.limits.R | 65 + tests/testthat/test-dropbig.R | 147 ++ tests/testthat/test-get_data.R | 34 tests/testthat/test-invisible-returns.R | 33 tests/testthat/test-is.R | 36 tests/testthat/test-kable.R | 446 ++++++- tests/testthat/test-multisimsum.R | 322 ++++- tests/testthat/test-performance-math.R | 73 + tests/testthat/test-simsum.R | 310 ++++- tests/testthat/test-summary.multisimsum.R | 150 ++ tests/testthat/test-summary.simsum.R | 125 +- tests/testthat/test-tidy.R | 34 tests/testthat/test-utils.R | 76 + vignettes/A-introduction.Rmd | 78 - 72 files changed, 5586 insertions(+), 1232 deletions(-)
Title: Parser for the ITCH Protocol
Description: Efficiently parses, filters, and writes binary ITCH files (Version 5.0) containing detailed financial transactions as distributed by NASDAQ to a data.table. Includes functions to interact with NASDAQ data services at <https://emi.nasdaq.com/ITCH/> and <https://emi.nasdaq.com/ITCH/Stock_Locate_Codes/>.
Author: David Zimmermann-Kollenda [aut, cre]
Maintainer: David Zimmermann-Kollenda <david_j_zimmermann@hotmail.com>
This is a re-admission after prior archival of version 0.1.26 dated 2024-01-15
Diff between RITCH versions 0.1.26 dated 2024-01-15 and 0.1.30 dated 2026-04-21
DESCRIPTION | 12 LICENSE | 4 MD5 | 66 - NEWS.md | 118 +- R/RcppExports.R | 54 - R/count_functions.R | 630 +++++++------- R/data_samples.R | 312 +++---- R/download_stock_directory.R | 168 +-- R/filter_itch.R | 376 ++++---- R/globals.R | 10 R/gz_functions.R | 233 ++--- R/helpers.R | 596 +++++++------ R/read_functions.R | 1549 +++++++++++++++++------------------- R/write_itch.R | 9 R/zzz.R | 72 - README.md | 1034 ++++++++++++------------ inst/tinytest/test_filter_itch.R | 806 +++++++++--------- inst/tinytest/test_gz_functions.R | 66 - inst/tinytest/test_read_functions.R | 959 +++++++++++----------- inst/tinytest/test_write_itch.R | 240 ++--- man/count_functions.Rd | 11 man/download_sample_file.Rd | 114 +- man/download_stock_directory.Rd | 81 - man/filter_itch.Rd | 5 man/get_msg_classes.Rd | 2 man/gz_functions.Rd | 12 man/list_sample_files.Rd | 40 man/open_itch_sample_server.Rd | 40 man/open_itch_specification.Rd | 41 man/read_functions.Rd | 22 src/count_messages.cpp | 20 src/filter_itch.cpp | 20 src/read_functions.cpp | 20 tests/tinytests.R | 27 34 files changed, 3934 insertions(+), 3835 deletions(-)
Title: Branding, Theme Application and Navigation Utilities for
'bs4Dash' Dashboards
Description: Provides branding, theme application, and navigation utilities for
applications built with 'bs4Dash' and 'shiny'. Supports configurable
sidebar brand display modes, hover-expand behavior, and theme
customization using CSS variables. Includes standardized navigation
components such as refresh and help controls, along with helpers for
common navigation bar and footer layouts.
Author: George Arthur [aut, cre]
Maintainer: George Arthur <prigasgenthian48@gmail.com>
Diff between bs4Dashkit versions 0.1.0 dated 2026-03-10 and 0.2.0 dated 2026-04-21
DESCRIPTION | 6 MD5 | 101 +-- NAMESPACE | 3 NEWS.md | 117 +++ R/navbar_title.R | 17 R/sidebar_mode.R | 914 ++++++++++++++++--------------- R/theme.R | 87 ++ R/theme_presets.R | 162 ++++- R/titles.R | 278 +++++---- R/use_core.R | 474 +++++++++++++++- R/utils.R | 66 ++ R/validate.R | 110 +++ README.md | 99 ++- inst/app-assets/dash-nav-center.js | 151 +++-- inst/app-assets/dash-sidebar.css | 565 +++++++++---------- inst/app-assets/dash-theme.css | 143 ++++ inst/doc/branding-and-sidebar-modes.R | 34 - inst/doc/branding-and-sidebar-modes.Rmd | 77 +- inst/doc/branding-and-sidebar-modes.html | 77 +- inst/doc/complete-example-app.R | 6 inst/doc/complete-example-app.Rmd | 30 - inst/doc/complete-example-app.html | 9 inst/doc/getting-started.R | 44 + inst/doc/getting-started.Rmd | 122 +++- inst/doc/getting-started.html | 163 +++-- inst/doc/global-options.R | 8 inst/doc/global-options.Rmd | 20 inst/doc/global-options.html | 14 inst/doc/navigation-utilities.R | 59 -- inst/doc/navigation-utilities.Rmd | 105 +-- inst/doc/navigation-utilities.html | 212 +++---- inst/doc/theming-and-presets.R | 9 inst/doc/theming-and-presets.Rmd | 44 - inst/doc/theming-and-presets.html | 30 - inst/examples |only man/bs4dashkit_demo_app.Rd |only man/bs4dashkit_example_app.Rd |only man/bs4dashkit_theme_presets.Rd |only man/dash_brand_ui.Rd | 6 man/dash_nav_title.Rd | 2 man/dash_titles.Rd | 28 man/use_bs4Dashkit_core.Rd | 1 man/use_dash_sidebar_brand_mode.Rd | 28 man/use_dash_theme.Rd | 34 + tests/testthat/test-dash-titles.R | 265 ++++++-- tests/testthat/test-nav-buttons.R | 17 tests/testthat/test-theme-presets.R |only vignettes/branding-and-sidebar-modes.Rmd | 77 +- vignettes/complete-example-app.Rmd | 30 - vignettes/getting-started.Rmd | 122 +++- vignettes/global-options.Rmd | 20 vignettes/navigation-utilities.Rmd | 105 +-- vignettes/theming-and-presets.Rmd | 44 - 53 files changed, 3354 insertions(+), 1781 deletions(-)
Title: Pubmed Unified REtrieval for Multi-Output Exploration
Description: Access a variety of 'PubMed' data through a single, user-friendly interface, including abstracts, bibliometrics from 'iCite', pubtations from 'PubTator3', and full-text records from 'PMC'.
Author: Jason Timm [aut, cre]
Maintainer: Jason Timm <JaTimm@salud.unm.edu>
Diff between puremoe versions 1.0.3 dated 2026-01-26 and 1.0.4 dated 2026-04-21
puremoe-1.0.3/puremoe/R/source_references.R |only puremoe-1.0.4/puremoe/DESCRIPTION | 11 - puremoe-1.0.4/puremoe/MD5 | 30 ++- puremoe-1.0.4/puremoe/NAMESPACE | 3 puremoe-1.0.4/puremoe/NEWS.md | 30 +++ puremoe-1.0.4/puremoe/R/data_mesh_frequencies.R |only puremoe-1.0.4/puremoe/R/get_records.R | 31 +-- puremoe-1.0.4/puremoe/R/pmid_to_ftp.R | 61 +++---- puremoe-1.0.4/puremoe/R/source_pmc.R | 129 ++++++---------- puremoe-1.0.4/puremoe/README.md | 167 +++++++-------------- puremoe-1.0.4/puremoe/build |only puremoe-1.0.4/puremoe/data |only puremoe-1.0.4/puremoe/inst |only puremoe-1.0.4/puremoe/man/data_mesh_frequencies.Rd |only puremoe-1.0.4/puremoe/man/get_records.Rd | 8 - puremoe-1.0.4/puremoe/tests |only puremoe-1.0.4/puremoe/vignettes |only 17 files changed, 209 insertions(+), 261 deletions(-)
Title: Estimation and Exogenous Covariate Selection for ARCH-m(X),
Additive ARCH-m(x), and GARCH-X Models
Description: Estimates the parameters and nonparametric functions of an ARCH-m(X) model with exogenous covariates, estimates the parameters and nonparametric functions of an Additive ARCH-m(X) model with exogenous covariates, estimates the parameters of a GARCH-X model with exogenous covariates, performs hypothesis tests for the covariates returning the p-values, and performs stepwise variable selection on the exogenous covariates, and uses False Discovery Rate p-value corrections to select the exogenous variables.
Author: Adriano Zambom [aut, cre],
Vincent Alegrete [aut],
Elijah Sagaran [aut],
Avni Israni [aut]
Maintainer: Adriano Zambom <adriano.zambom@csun.edu>
Diff between GARCH.X versions 1.0 dated 2025-06-17 and 2.0 dated 2026-04-21
GARCH.X-1.0/GARCH.X/R/AIC.R |only GARCH.X-1.0/GARCH.X/R/BIC.R |only GARCH.X-1.0/GARCH.X/R/GARCHX.default.R |only GARCH.X-1.0/GARCH.X/R/GARCHX_select.R |only GARCH.X-1.0/GARCH.X/R/GARCHX_select.default.R |only GARCH.X-1.0/GARCH.X/R/Inv.R |only GARCH.X-1.0/GARCH.X/R/Likelihood.GARCHX.R |only GARCH.X-1.0/GARCH.X/R/Likelihood.R |only GARCH.X-1.0/GARCH.X/R/anova_test_univariate.R |only GARCH.X-1.0/GARCH.X/R/check_order.R |only GARCH.X-1.0/GARCH.X/R/check_pi.R |only GARCH.X-1.0/GARCH.X/R/choosek.R |only GARCH.X-1.0/GARCH.X/R/create_ARCHMX.R |only GARCH.X-1.0/GARCH.X/R/create_ARCHMXobj.R |only GARCH.X-1.0/GARCH.X/R/create_GARCHXobj.R |only GARCH.X-1.0/GARCH.X/R/estimate.GARCHX.R |only GARCH.X-1.0/GARCH.X/R/estimate.R |only GARCH.X-1.0/GARCH.X/R/get_kernel_weights.R |only GARCH.X-1.0/GARCH.X/R/nadaray_watson.R |only GARCH.X-1.0/GARCH.X/R/nadaray_watson_cv.R |only GARCH.X-1.0/GARCH.X/R/objf.R |only GARCH.X-1.0/GARCH.X/R/predict.R |only GARCH.X-1.0/GARCH.X/R/simulate.GARCHX.R |only GARCH.X-1.0/GARCH.X/R/simulate.R |only GARCH.X-1.0/GARCH.X/R/variance.GARCHX.R |only GARCH.X-1.0/GARCH.X/R/variance.R |only GARCH.X-1.0/GARCH.X/man/AIC.Rd |only GARCH.X-1.0/GARCH.X/man/BIC.Rd |only GARCH.X-1.0/GARCH.X/man/GARCHX_select.Rd |only GARCH.X-1.0/GARCH.X/man/predict.Rd |only GARCH.X-1.0/GARCH.X/man/simulate.Rd |only GARCH.X-2.0/GARCH.X/DESCRIPTION | 25 +- GARCH.X-2.0/GARCH.X/MD5 | 91 ++++--- GARCH.X-2.0/GARCH.X/NAMESPACE | 43 ++- GARCH.X-2.0/GARCH.X/R/AIC.ARCHmX.R |only GARCH.X-2.0/GARCH.X/R/AIC.ARCHmXAdditive.R |only GARCH.X-2.0/GARCH.X/R/AIC.GARCHX.R | 22 - GARCH.X-2.0/GARCH.X/R/ARCHMX_choosek.R |only GARCH.X-2.0/GARCH.X/R/ARCHmX.R |only GARCH.X-2.0/GARCH.X/R/ARCHmXAdditive.R |only GARCH.X-2.0/GARCH.X/R/ARCHmXAdditive_backfitting.R |only GARCH.X-2.0/GARCH.X/R/ARCHmXAdditive_backfitting_lowes.R |only GARCH.X-2.0/GARCH.X/R/ARCHmXAdditive_backfitting_variance_smooth.R |only GARCH.X-2.0/GARCH.X/R/ARCHmXAdditive_estimate.R |only GARCH.X-2.0/GARCH.X/R/ARCHmX_anova_test_univariate.R |only GARCH.X-2.0/GARCH.X/R/ARCHmX_kernel_between_iso.R |only GARCH.X-2.0/GARCH.X/R/ARCHmX_kernel_matrix_iso.R |only GARCH.X-2.0/GARCH.X/R/ARCHmX_nw_cv_bandwidth.R |only GARCH.X-2.0/GARCH.X/R/ARCHmX_predict_nw_iso.R |only GARCH.X-2.0/GARCH.X/R/ARCHmX_simulate_white_noise.R |only GARCH.X-2.0/GARCH.X/R/BIC.ARCHmX.R |only GARCH.X-2.0/GARCH.X/R/BIC.ARCHmXAdditive.R |only GARCH.X-2.0/GARCH.X/R/BIC.GARCHX.R | 26 +- GARCH.X-2.0/GARCH.X/R/GARCHX.R | 29 -- GARCH.X-2.0/GARCH.X/R/GARCHX_Inv.R |only GARCH.X-2.0/GARCH.X/R/GARCHX_Likelihood.R |only GARCH.X-2.0/GARCH.X/R/GARCHX_check_order.R |only GARCH.X-2.0/GARCH.X/R/GARCHX_check_pi.R |only GARCH.X-2.0/GARCH.X/R/GARCHX_estimate.R |only GARCH.X-2.0/GARCH.X/R/GARCHX_objf.R |only GARCH.X-2.0/GARCH.X/R/GARCHX_variance.R |only GARCH.X-2.0/GARCH.X/R/new_ARCHmX.R |only GARCH.X-2.0/GARCH.X/R/new_ARCHmXAdditive.R |only GARCH.X-2.0/GARCH.X/R/new_GARCHX.R |only GARCH.X-2.0/GARCH.X/R/predict.ARCHmX.R |only GARCH.X-2.0/GARCH.X/R/predict.ARCHmXAdditive.R |only GARCH.X-2.0/GARCH.X/R/predict.GARCHX.R | 115 +++++----- GARCH.X-2.0/GARCH.X/R/set_seed.R |only GARCH.X-2.0/GARCH.X/R/sim.ARCHmX.R |only GARCH.X-2.0/GARCH.X/R/sim.ARCHmXAdditive.R |only GARCH.X-2.0/GARCH.X/R/sim.GARCHX.R |only GARCH.X-2.0/GARCH.X/R/stepwise.R |only GARCH.X-2.0/GARCH.X/R/summary.ARCHmX.R |only GARCH.X-2.0/GARCH.X/R/summary.ARCHmXAdditive.R |only GARCH.X-2.0/GARCH.X/R/summary.GARCHX.R |only GARCH.X-2.0/GARCH.X/R/validate_ARCHmX.R |only GARCH.X-2.0/GARCH.X/R/validate_ARCHmXAdditive.R |only GARCH.X-2.0/GARCH.X/R/validate_GARCHX.R |only GARCH.X-2.0/GARCH.X/man/ARCHmX.Rd |only GARCH.X-2.0/GARCH.X/man/ARCHmXAdditive.Rd |only GARCH.X-2.0/GARCH.X/man/GARCHX.Rd | 52 +++- GARCH.X-2.0/GARCH.X/man/sim.ARCHmX.Rd |only GARCH.X-2.0/GARCH.X/man/sim.ARCHmXAdditive.Rd |only GARCH.X-2.0/GARCH.X/man/sim.GARCHX.Rd |only GARCH.X-2.0/GARCH.X/man/stepwise.Rd |only 85 files changed, 222 insertions(+), 181 deletions(-)
Title: Mixture-of-Experts Wishart Models for Covariance Data
Description: Methods for maximum likelihood and Bayesian estimation for the Wishart mixture model and the mixture-of-experts Wishart (MoE-Wishart) model. The package provides four inference algorithms for these models, each implemented using the expectation–maximization (EM) algorithm for maximum likelihood estimation and a fully Bayesian approach via Gibbs-within-Metropolis–Hastings sampling.
Author: The Tien Mai [aut],
Zhi Zhao [aut, cre]
Maintainer: Zhi Zhao <zhi.zhao@medisin.uio.no>
Diff between moewishart versions 1.0 dated 2026-02-19 and 1.1 dated 2026-04-21
DESCRIPTION | 9 - MD5 | 31 ++-- NAMESPACE | 3 NEWS.md | 21 --- R/CTRP.R |only R/moewishart.R | 8 - R/plotMCMC.R |only README.md | 298 ++++++++++++++++++++++++++++++++++++++++++---- build/vignette.rds |binary data |only inst/CITATION |only inst/doc/Intro.R | 3 inst/doc/Intro.Rmd | 14 +- inst/doc/Intro.html | 142 ++++++++++----------- man/CTRP.Rd |only man/moewishart.Rd | 4 man/plotMCMC.Rd |only vignettes/Intro.Rmd | 14 +- vignettes/Intro.knit.html | 142 ++++++++++----------- 19 files changed, 476 insertions(+), 213 deletions(-)
Title: Applying Partitioning Around Medoids to Single Cell Data with
High Number of Cells
Description: PAM (Partitioning Around Medoids) algorithm application to samples of single cell sequencing techniques
with a high number of cells (as many as the computer memory allows). The package uses a binary format to
store matrices (either full, sparse or symmetric) in files written in the disk that can contain any data type
(not just double) which allows its manipulation when memory is sufficient to load them as int or float, but not
as double. The PAM implementation is done in parallel, using several/all the cores of the machine, if it has them.
This package shares a great part of its code with packages 'jmatrix' and 'parallelpam' but their functionality is
included here so there is no need to install them.
Author: Juan Domingo [aut, cre] ,
Guillermo Ayala [ctb] ,
Spanish Ministry of Science and Innovation, MCIN/AEI
<doi:10.13039/501100011033> [fnd]
Maintainer: Juan Domingo <Juan.Domingo@uv.es>
Diff between scellpam versions 1.4.6.2 dated 2024-07-18 and 1.4.7 dated 2026-04-21
DESCRIPTION | 15 MD5 | 42 + NAMESPACE | 4 NEWS | 6 R/RcppExports.R | 90 ++++ build/vignette.rds |binary inst/doc/jmatrixsc.html | 618 +++++++++++++-------------- inst/doc/parallelpamsc.R | 46 +- inst/doc/parallelpamsc.html | 441 +++++++++---------- inst/doc/scellpam.R | 70 +-- inst/doc/scellpam.html | 667 ++++++++++++++---------------- inst/include/closecases.h |only inst/include/filtermat.h |only man/ClosestCases.Rd |only man/ExtractAndWriteDissimilarityMatrix.Rd |only man/JMatInfoList.Rd |only man/ScellpamGetDebug.Rd |only src/RcppExports.cpp | 53 ++ src/biodatatojmat.cpp | 8 src/closecases.cpp |only src/debugpar.cpp | 23 + src/dissimmat.cpp | 56 ++ src/filtermat.cpp |only src/filtersil.cpp | 162 ------- src/matinfo.cpp | 78 +++ src/memhelper.cpp | 16 26 files changed, 1260 insertions(+), 1135 deletions(-)
Title: Biplot of Multivariate Data Based on Principal Components
Analysis
Description: Implements biplot (2d and 3d) of multivariate data based
on principal components analysis and diagnostic tools of the quality of the reduction.
Author: Jose C. Faria [aut, cre],
Ivan B. Allaman [aut],
Clarice G. B. Demetrio [aut]
Maintainer: Jose C. Faria <joseclaudio.faria@gmail.com>
Diff between bpca versions 1.3-8 dated 2025-09-10 and 1.3-9 dated 2026-04-21
DESCRIPTION | 8 - MD5 | 62 +++---- NEWS | 12 + R/bpca.R | 1 R/bpca.default.R | 1 R/bpca.prcomp.R | 1 R/dt.tools.R | 1 R/plot.bpca.2d.R | 104 +++++++------ R/plot.bpca.3d.R | 374 ++++++++++++++++++++++-------------------------- R/plot.qbpca.R | 1 R/print.xtable.bpca.R | 1 R/qbpca.R | 1 R/summary.bpca.R | 1 R/var.rbf.R | 1 R/var.rdf.R | 1 R/xtable.bpca.R | 1 demo/bpca-dinamic-3d.R | 5 demo/bpca-static-2d.R | 42 ----- demo/bpca-static-3d.R | 36 +++- demo/bpca.R | 223 +++++++++++++--------------- demo/iris-var-rd.R | 21 +- demo/iris.R | 15 + demo/rock-var-rd.R | 12 - demo/var-rb-2d.R | 56 +++---- demo/var-rb-3d.R | 64 ++++---- demo/var-rd-2d.R | 50 +++++- inst/doc/latex-bpca.pdf |binary man/bpca-package.Rd | 19 -- man/bpca.Rd | 27 +-- man/gabriel1971.Rd | 3 man/plot.Rd | 42 ++--- man/var.rdf.Rd | 23 -- 32 files changed, 591 insertions(+), 618 deletions(-)
Title: Create TLGs using the 'tidyverse'
Description: Generate tables, listings, and graphs (TLG) using 'tidyverse'.
Tables can be created functionally, using a standard TLG process, or by
specifying table and column metadata to create generic analysis summaries.
The 'envsetup' package can also be leveraged to create environments for table
creation.
Author: Nicholas Masel [aut],
Steven Haesendonckx [aut],
Pelagia Alexandra Papadopoulou [aut],
Sheng-Wei Wang [aut],
Eli Miller [aut] ,
Nathan Kosiba [aut] ,
Aidan Ceney [aut] ,
Janssen R&D [cph, fnd],
David Hugh-Jones [cph] ,
Konrad Pagacz [aut, cre]
Maintainer: Konrad Pagacz <kpagacz@its.jnj.com>
Diff between tidytlg versions 0.11.0 dated 2025-12-19 and 0.12.0 dated 2026-04-21
DESCRIPTION | 6 MD5 | 41 +++--- NAMESPACE | 2 NEWS.md | 7 + R/gentlg.R | 89 ++++++++++--- R/gentlg_single.R | 94 ++++++++------ R/getFileName.R | 10 - R/insert_empty_rows.R | 18 ++ R/replace_lead_whitespaces_ind.R |only inst/WORDLIST | 49 ++----- inst/doc/tbl_manipulation.html | 20 +-- inst/doc/tidytlg.html | 16 +- man/gentlg.Rd | 37 +++++ man/get_file_name.Rd |only man/insert_empty_rows.Rd | 16 +- man/replace_lead_whitespaces_ind.Rd |only tests/testthat/_snaps/borders/stubborntest.rtf | 2 tests/testthat/test-gentlg.R | 125 ++++++++++++++++++- tests/testthat/test_outputs/borders/stubborntest.rtf | 2 tests/testthat/test_outputs/png1.png |binary tests/testthat/test_outputs/png1.rtf | 2 tests/testthat/test_outputs/png2.png |binary tests/testthat/test_outputs/png2.rtf | 2 23 files changed, 384 insertions(+), 154 deletions(-)
Title: Person Parameter Estimation
Description: The PP package includes estimation of (MLE, WLE, MAP, EAP, ROBUST)
person parameters for the 1,2,3,4-PL model and the GPCM (generalized
partial credit model). The parameters are estimated under the assumption
that the item parameters are known and fixed. The package is useful e.g. in
the case that items from an item pool / item bank with known item parameters
are administered to a new population of test-takers and an ability
estimation for every test-taker is needed.
Author: Jan Steinfeld [cre, aut] ,
Manuel Reif [aut]
Maintainer: Jan Steinfeld <jan.d.steinfeld@gmail.com>
Diff between PP versions 0.6.3-11 dated 2021-05-27 and 0.6.4-1 dated 2026-04-21
PP-0.6.3-11/PP/man/PP.Rd |only PP-0.6.4-1/PP/DESCRIPTION | 13 PP-0.6.4-1/PP/MD5 | 130 +-- PP-0.6.4-1/PP/NAMESPACE | 73 +- PP-0.6.4-1/PP/R/Infit.R | 144 ++-- PP-0.6.4-1/PP/R/Infitpoly.R | 214 +++--- PP-0.6.4-1/PP/R/JKpp.R | 916 +++++++++++++------------- PP-0.6.4-1/PP/R/Outfit.R | 142 ++-- PP-0.6.4-1/PP/R/Outfitpoly.R | 206 ++--- PP-0.6.4-1/PP/R/PP.R | 155 ++-- PP-0.6.4-1/PP/R/PP_4pl.R | 690 +++++++++---------- PP-0.6.4-1/PP/R/PP_gpcm.R | 474 ++++++------- PP-0.6.4-1/PP/R/PPall.R | 550 +++++++-------- PP-0.6.4-1/PP/R/PPass.R | 460 ++++++------- PP-0.6.4-1/PP/R/PV.R | 772 ++++++++++----------- PP-0.6.4-1/PP/R/Pfit.R | 318 ++++----- PP-0.6.4-1/PP/R/RcppExports.R | 212 +++--- PP-0.6.4-1/PP/R/checkINP.R | 76 +- PP-0.6.4-1/PP/R/dataRd.R | 90 +- PP-0.6.4-1/PP/R/eap.R | 306 ++++---- PP-0.6.4-1/PP/R/findmodel.R | 58 - PP-0.6.4-1/PP/R/jackknife.R | 40 - PP-0.6.4-1/PP/R/lz.R | 74 +- PP-0.6.4-1/PP/R/lzstar.R | 134 +-- PP-0.6.4-1/PP/R/lzstar_mixed.R |only PP-0.6.4-1/PP/R/make_dup.R | 38 - PP-0.6.4-1/PP/R/pkg_start.R | 10 PP-0.6.4-1/PP/R/prints.R | 316 ++++---- PP-0.6.4-1/PP/R/quadIT.R | 150 ++-- PP-0.6.4-1/PP/R/sim_gpcm.R | 100 +- PP-0.6.4-1/PP/R/stdrdize_hist.R | 88 +- PP-0.6.4-1/PP/build/vignette.rds |binary PP-0.6.4-1/PP/inst/CITATION | 38 - PP-0.6.4-1/PP/inst/doc/intro_pfit.R | 336 ++++----- PP-0.6.4-1/PP/inst/doc/intro_pfit.Rmd | 458 ++++++------- PP-0.6.4-1/PP/inst/doc/intro_pfit.html | 752 +++++++++++---------- PP-0.6.4-1/PP/inst/doc/intro_pp.R | 140 +-- PP-0.6.4-1/PP/inst/doc/intro_pp.Rmd | 374 +++++----- PP-0.6.4-1/PP/inst/doc/intro_pp.html | 829 ++++++++++++----------- PP-0.6.4-1/PP/inst/doc/ppass_par_and_fit.R | 152 ++-- PP-0.6.4-1/PP/inst/doc/ppass_par_and_fit.Rmd | 238 +++--- PP-0.6.4-1/PP/inst/doc/ppass_par_and_fit.html | 659 +++++++++--------- PP-0.6.4-1/PP/man/Jkpp.Rd | 472 ++++++------- PP-0.6.4-1/PP/man/PP-package.Rd |only PP-0.6.4-1/PP/man/PP_4pl.Rd | 464 ++++++------- PP-0.6.4-1/PP/man/PP_gpcm.Rd | 296 ++++---- PP-0.6.4-1/PP/man/PPall.Rd | 346 ++++----- PP-0.6.4-1/PP/man/PPass.Rd | 242 +++--- PP-0.6.4-1/PP/man/PV.Rd | 372 +++++----- PP-0.6.4-1/PP/man/Pfit_lzstarmix.Rd |only PP-0.6.4-1/PP/man/findmodel.Rd | 170 ++-- PP-0.6.4-1/PP/man/fourpl_df.Rd | 34 PP-0.6.4-1/PP/man/lzstar_mixed.Rd |only PP-0.6.4-1/PP/man/pfit.Rd | 360 +++++----- PP-0.6.4-1/PP/man/pp_amt.Rd | 86 +- PP-0.6.4-1/PP/man/print_personfit_summary.Rd |only PP-0.6.4-1/PP/man/sim_4pl.Rd | 148 ++-- PP-0.6.4-1/PP/man/sim_gpcm.Rd | 110 +-- PP-0.6.4-1/PP/src/GPCM4PL_stuff.cpp | 91 -- PP-0.6.4-1/PP/src/RcppExports.cpp | 5 PP-0.6.4-1/PP/tests/testthat.R | 2 PP-0.6.4-1/PP/tests/testthat/tests4pl.R | 248 +++---- PP-0.6.4-1/PP/tests/testthat/testsgpcm.R | 58 - PP-0.6.4-1/PP/tests/testthat/testsgpcm4pl.R | 110 +-- PP-0.6.4-1/PP/tests/testthat/testsjk.R | 102 +- PP-0.6.4-1/PP/vignettes/intro_pfit.Rmd | 458 ++++++------- PP-0.6.4-1/PP/vignettes/intro_pp.Rmd | 374 +++++----- PP-0.6.4-1/PP/vignettes/literatur.bib | 246 +++--- PP-0.6.4-1/PP/vignettes/ppass_par_and_fit.Rmd | 238 +++--- 69 files changed, 8054 insertions(+), 7903 deletions(-)
Title: Network Analysis and Visualization
Description: Routines for simple graphs and network analysis. It can
handle large graphs very well and provides functions for generating
random and regular graphs, graph visualization, centrality methods and
much more.
Author: Gabor Csardi [aut] ,
Tamas Nepusz [aut] ,
Vincent Traag [aut] ,
Szabolcs Horvat [aut] ,
Fabio Zanini [aut] ,
Daniel Noom [aut],
Kirill Mueller [aut, cre] ,
Michael Antonov [ctb],
Chan Zuckerberg Initiative [fnd] ,
David Schoch [aut] ,
Maelle Salmon [a [...truncated...]
Maintainer: Kirill Mueller <kirill@cynkra.com>
Diff between igraph versions 2.2.3 dated 2026-04-07 and 2.3.0 dated 2026-04-21
DESCRIPTION | 18 MD5 | 1295 +- NAMESPACE | 14 NEWS.md | 73 R/aaa-auto.R |12356 +++++++++++++++++++++++---- R/adjacency.R | 48 R/assortativity.R | 47 R/attributes.R | 86 R/bipartite.R | 21 R/centrality.R | 186 R/centralization.R | 86 R/cliques.R | 238 R/cocitation.R | 20 R/cohesive.blocks.R | 6 R/coloring.R | 11 R/community.R | 226 R/components.R | 51 R/console.R | 10 R/conversion.R | 164 R/cycles.R | 67 R/decomposition.R | 4 R/degseq.R | 13 R/efficiency.R | 41 R/embedding.R | 54 R/epi.R | 4 R/eulerian.R | 26 R/fit.R | 6 R/flow.R | 180 R/foreign.R | 119 R/games.R | 845 + R/glet.R | 41 R/hrg.R | 77 R/incidence.R | 13 R/indexing.R | 4 R/interface.R | 169 R/iterators.R | 54 R/layout.R | 373 R/make.R | 709 + R/minimum.spanning.tree.R | 11 R/motifs.R | 106 R/operators.R | 55 R/other.R | 21 R/par.R | 4 R/paths.R | 60 R/plot.R | 6 R/plot.common.R | 2 R/plot.shapes.R | 2 R/pp.R | 2 R/print.R | 6 R/random_walk.R | 22 R/rewire.R | 51 R/scan.R | 103 R/sgm.R | 7 R/similarity.R | 23 R/simple.R | 27 R/sir.R | 10 R/stochastic_matrix.R | 13 R/structural-properties.R | 568 - R/structure.info.R | 9 R/topology.R | 537 - R/trees.R | 36 R/triangles.R | 15 R/utils-assert-args.R | 35 R/utils.R | 22 R/uuid.R | 2 R/versions.R | 20 R/weakref.R | 8 inst/doc/igraph.R | 10 inst/doc/igraph.Rmd | 10 inst/doc/igraph.html | 57 inst/doc/igraph_ES.R | 32 inst/doc/igraph_ES.html | 83 inst/doc/igraph_ES.rmd | 36 man/E.Rd | 4 man/V.Rd | 4 man/aaa-igraph-package.Rd | 1 man/add.edges.Rd | 4 man/add.vertices.Rd | 4 man/add_edges.Rd | 5 man/add_vertices.Rd | 5 man/adjacent.triangles.Rd | 4 man/adjacent_vertices.Rd | 4 man/aging.ba.game.Rd | 4 man/aging.barabasi.game.Rd | 4 man/aging.prefatt.game.Rd | 4 man/align_layout.Rd | 4 man/all_simple_paths.Rd | 4 man/alpha.centrality.Rd | 4 man/alpha_centrality.Rd | 4 man/are.connected.Rd | 4 man/are_adjacent.Rd | 6 man/articulation.points.Rd | 4 man/articulation_points.Rd | 7 man/as.directed.Rd | 4 man/as.igraph.Rd | 4 man/as.matrix.igraph.Rd | 4 man/as.undirected.Rd | 4 man/as_adj.Rd | 4 man/as_adj_list.Rd | 4 man/as_adjacency_matrix.Rd | 4 man/as_biadjacency_matrix.Rd | 4 man/as_directed.Rd | 6 man/as_edgelist.Rd | 4 man/as_graphnel.Rd | 4 man/as_incidence_matrix.Rd | 4 man/as_long_data_frame.Rd | 4 man/assortativity.Rd | 9 man/assortativity.degree.Rd | 4 man/assortativity.nominal.Rd | 7 man/asymmetric.preference.game.Rd | 6 man/authority.score.Rd | 4 man/autocurve.edges.Rd | 4 man/automorphism_group.Rd | 6 man/automorphisms.Rd | 4 man/average.path.length.Rd | 4 man/ba.game.Rd | 9 man/barabasi.game.Rd | 9 man/betweenness.Rd | 4 man/bfs.Rd | 7 man/biconnected.components.Rd | 4 man/biconnected_components.Rd | 7 man/bipartite.mapping.Rd | 4 man/bipartite.projection.Rd | 4 man/bipartite.projection.size.Rd | 4 man/bipartite.random.game.Rd | 4 man/bipartite_mapping.Rd | 6 man/bipartite_projection.Rd | 6 man/bonpow.Rd | 4 man/callaway.traits.game.Rd | 4 man/canonical.permutation.Rd | 4 man/canonical_permutation.Rd | 6 man/centr_betw.Rd | 4 man/centr_betw_tmax.Rd | 6 man/centr_clo.Rd | 6 man/centr_clo_tmax.Rd | 6 man/centr_degree.Rd | 6 man/centr_degree_tmax.Rd | 4 man/centr_eigen.Rd | 6 man/centr_eigen_tmax.Rd | 6 man/centralization.betweenness.Rd | 4 man/centralization.betweenness.tmax.Rd | 4 man/centralization.closeness.Rd | 4 man/centralization.closeness.tmax.Rd | 4 man/centralization.degree.Rd | 4 man/centralization.degree.tmax.Rd | 4 man/centralization.evcent.Rd | 4 man/centralization.evcent.tmax.Rd | 4 man/centralize.Rd | 6 man/centralize.scores.Rd | 4 man/cited.type.game.Rd | 4 man/citing.cited.type.game.Rd | 4 man/clique.number.Rd | 4 man/cliques.Rd | 42 man/closeness.Rd | 4 man/cluster.distribution.Rd | 4 man/cluster_edge_betweenness.Rd | 4 man/cluster_fast_greedy.Rd | 4 man/cluster_fluid_communities.Rd | 4 man/cluster_infomap.Rd | 4 man/cluster_label_prop.Rd | 4 man/cluster_leading_eigen.Rd | 4 man/cluster_leiden.Rd | 4 man/cluster_louvain.Rd | 4 man/cluster_optimal.Rd | 4 man/cluster_spinglass.Rd | 4 man/cluster_walktrap.Rd | 4 man/clusters.Rd | 4 man/cocitation.Rd | 4 man/cohesive.blocks.Rd | 4 man/cohesive_blocks.Rd | 4 man/communities.Rd | 4 man/compare.Rd | 4 man/complementer.Rd | 5 man/component_wise.Rd | 5 man/components.Rd | 7 man/compose.Rd | 5 man/connect.neighborhood.Rd | 4 man/consensus_tree.Rd | 6 man/constraint.Rd | 4 man/contract.Rd | 7 man/contract.vertices.Rd | 4 man/convex.hull.Rd | 4 man/convex_hull.Rd | 6 man/coreness.Rd | 4 man/count.multiple.Rd | 4 man/count_automorphisms.Rd | 6 man/count_isomorphisms.Rd | 4 man/count_motifs.Rd | 4 man/count_reachable.Rd |only man/count_subgraph_isomorphisms.Rd | 4 man/count_triangles.Rd | 6 man/curve_multiple.Rd | 4 man/decompose.Rd | 5 man/decompose.graph.Rd | 4 man/degree.Rd | 14 man/degree.distribution.Rd | 4 man/degree.sequence.game.Rd | 4 man/delete.edges.Rd | 4 man/delete.vertices.Rd | 4 man/delete_edges.Rd | 5 man/delete_vertices.Rd | 5 man/dfs.Rd | 4 man/diameter.Rd | 4 man/difference.Rd | 1 man/difference.igraph.Rd | 5 man/dim_select.Rd | 6 man/disjoint_union.Rd | 5 man/distances.Rd | 6 man/diversity.Rd | 6 man/dominator.tree.Rd | 4 man/dominator_tree.Rd | 4 man/dyad.census.Rd | 4 man/dyad_census.Rd | 6 man/eccentricity.Rd | 6 man/edge.Rd | 1 man/edge.betweenness.Rd | 4 man/edge.betweenness.community.Rd | 4 man/edge.connectivity.Rd | 4 man/edge.disjoint.paths.Rd | 4 man/edge_attr.Rd | 4 man/edge_connectivity.Rd | 4 man/edge_density.Rd | 6 man/ego.Rd | 5 man/eigen_centrality.Rd | 6 man/embed_adjacency_matrix.Rd | 6 man/embed_laplacian_matrix.Rd | 6 man/ends.Rd | 4 man/erdos.renyi.game.Rd | 4 man/establishment.game.Rd | 4 man/estimate_betweenness.Rd | 4 man/estimate_closeness.Rd | 4 man/estimate_edge_betweenness.Rd | 4 man/evcent.Rd | 4 man/exportPajek.Rd | 4 man/farthest.nodes.Rd | 4 man/fastgreedy.community.Rd | 4 man/feedback_arc_set.Rd | 6 man/feedback_vertex_set.Rd | 6 man/find_cycle.Rd | 6 man/fit_hrg.Rd | 4 man/forest.fire.game.Rd | 4 man/from_incidence_matrix.Rd | 4 man/get.adjacency.Rd | 4 man/get.adjedgelist.Rd | 4 man/get.adjlist.Rd | 4 man/get.all.shortest.paths.Rd | 4 man/get.data.frame.Rd | 4 man/get.diameter.Rd | 4 man/get.edge.attribute.Rd | 4 man/get.edge.ids.Rd | 4 man/get.edgelist.Rd | 4 man/get.incidence.Rd | 4 man/get.shortest.paths.Rd | 4 man/get.stochastic.Rd | 4 man/get.vertex.attribute.Rd | 4 man/get_edge_ids.Rd | 4 man/girth.Rd | 4 man/global_efficiency.Rd | 6 man/gorder.Rd | 6 man/graph.Rd | 4 man/graph.adhesion.Rd | 4 man/graph.adjacency.Rd | 4 man/graph.adjlist.Rd | 4 man/graph.atlas.Rd | 4 man/graph.automorphisms.Rd | 4 man/graph.bfs.Rd | 7 man/graph.bipartite.Rd | 4 man/graph.complementer.Rd | 4 man/graph.compose.Rd | 4 man/graph.coreness.Rd | 4 man/graph.data.frame.Rd | 4 man/graph.de.bruijn.Rd | 4 man/graph.density.Rd | 4 man/graph.dfs.Rd | 4 man/graph.disjoint.union.Rd | 4 man/graph.diversity.Rd | 4 man/graph.edgelist.Rd | 4 man/graph.empty.Rd | 4 man/graph.extended.chordal.ring.Rd | 4 man/graph.famous.Rd | 4 man/graph.formula.Rd | 4 man/graph.full.Rd | 4 man/graph.full.bipartite.Rd | 4 man/graph.full.citation.Rd | 4 man/graph.graphdb.Rd | 4 man/graph.incidence.Rd | 4 man/graph.isocreate.Rd | 4 man/graph.kautz.Rd | 4 man/graph.knn.Rd | 4 man/graph.laplacian.Rd | 4 man/graph.lattice.Rd | 6 man/graph.lcf.Rd | 4 man/graph.maxflow.Rd | 4 man/graph.mincut.Rd | 4 man/graph.motifs.Rd | 6 man/graph.motifs.est.Rd | 4 man/graph.motifs.no.Rd | 4 man/graph.neighborhood.Rd | 4 man/graph.ring.Rd | 4 man/graph.star.Rd | 4 man/graph.strength.Rd | 4 man/graph.tree.Rd | 4 man/graph.union.Rd | 4 man/graph_.Rd | 4 man/graph_center.Rd | 6 man/graph_from_adj_list.Rd | 6 man/graph_from_adjacency_matrix.Rd | 15 man/graph_from_atlas.Rd | 14 man/graph_from_biadjacency_matrix.Rd | 4 man/graph_from_data_frame.Rd | 4 man/graph_from_edgelist.Rd | 10 man/graph_from_graphdb.Rd | 4 man/graph_from_graphnel.Rd | 4 man/graph_from_incidence_matrix.Rd | 4 man/graph_from_isomorphism_class.Rd | 6 man/graph_from_lcf.Rd | 6 man/graph_from_literal.Rd | 10 man/graphlet_basis.Rd | 6 man/graphlets.candidate.basis.Rd | 4 man/graphlets.project.Rd | 4 man/greedy_vertex_coloring.Rd | 6 man/grg.game.Rd | 4 man/growing.random.game.Rd | 4 man/gsize.Rd | 4 man/harmonic_centrality.Rd | 6 man/has.multiple.Rd | 4 man/has_eulerian_path.Rd | 6 man/head_of.Rd | 4 man/hits_scores.Rd | 6 man/hrg.Rd | 6 man/hrg.consensus.Rd | 4 man/hrg.create.Rd | 4 man/hrg.dendrogram.Rd | 4 man/hrg.fit.Rd | 4 man/hrg.game.Rd | 4 man/hrg.predict.Rd | 4 man/hrg_tree.Rd | 6 man/hub.score.Rd | 4 man/hub_score.Rd | 4 man/igraph-minus.Rd | 1 man/igraph.from.graphNEL.Rd | 4 man/igraph.sample.Rd | 4 man/igraph.to.graphNEL.Rd | 4 man/igraph.version.Rd | 4 man/igraph_version.Rd | 4 man/incident.Rd | 4 man/incident_edges.Rd | 4 man/independence.number.Rd | 4 man/independent.vertex.sets.Rd | 4 man/induced.subgraph.Rd | 4 man/infomap.community.Rd | 4 man/inside-square-error.Rd | 4 man/interconnected.islands.game.Rd | 4 man/intersection.Rd | 1 man/intersection.igraph.Rd | 5 man/invalidate_cache.Rd |only man/is.connected.Rd | 4 man/is.dag.Rd | 4 man/is.degree.sequence.Rd | 4 man/is.directed.Rd | 4 man/is.graphical.degree.sequence.Rd | 4 man/is.loop.Rd | 4 man/is.matching.Rd | 4 man/is.maximal.matching.Rd | 4 man/is.minimal.separator.Rd | 4 man/is.multiple.Rd | 4 man/is.mutual.Rd | 4 man/is.separator.Rd | 4 man/is.simple.Rd | 4 man/is_acyclic.Rd | 6 man/is_biconnected.Rd | 7 man/is_complete.Rd | 6 man/is_dag.Rd | 6 man/is_degseq.Rd | 4 man/is_directed.Rd | 4 man/is_forest.Rd | 6 man/is_graphical.Rd | 6 man/is_min_separator.Rd | 6 man/is_separator.Rd | 6 man/is_tree.Rd | 6 man/isomorphic.Rd | 4 man/isomorphism_class.Rd | 4 man/isomorphisms.Rd | 25 man/ivs.Rd | 6 man/k.regular.game.Rd | 4 man/k_shortest_paths.Rd | 12 man/knn.Rd | 6 man/label.propagation.community.Rd | 4 man/laplacian_matrix.Rd | 6 man/largest.cliques.Rd | 4 man/largest.independent.vertex.sets.Rd | 4 man/lastcit.game.Rd | 4 man/layout.auto.Rd | 4 man/layout.bipartite.Rd | 4 man/layout.davidson.harel.Rd | 4 man/layout.drl.Rd | 4 man/layout.fruchterman.reingold.grid.Rd | 4 man/layout.gem.Rd | 4 man/layout.grid.Rd | 4 man/layout.mds.Rd | 4 man/layout.spring.Rd | 4 man/layout.star.Rd | 4 man/layout.sugiyama.Rd | 4 man/layout.svd.Rd | 4 man/layout_.Rd | 52 man/layout_as_bipartite.Rd | 4 man/layout_as_star.Rd | 4 man/layout_as_tree.Rd | 4 man/layout_in_circle.Rd | 4 man/layout_modifier.Rd |only man/layout_nicely.Rd | 4 man/layout_on_grid.Rd | 4 man/layout_on_sphere.Rd | 4 man/layout_randomly.Rd | 4 man/layout_with_dh.Rd | 4 man/layout_with_drl.Rd | 4 man/layout_with_fr.Rd | 4 man/layout_with_gem.Rd | 4 man/layout_with_kk.Rd | 4 man/layout_with_lgl.Rd | 4 man/layout_with_mds.Rd | 4 man/layout_with_sugiyama.Rd | 4 man/leading.eigenvector.community.Rd | 4 man/line.graph.Rd | 4 man/local_scan.Rd | 4 man/make_.Rd | 10 man/make_bipartite_graph.Rd | 8 man/make_chordal_ring.Rd | 14 man/make_circulant.Rd |only man/make_de_bruijn_graph.Rd | 8 man/make_empty_graph.Rd | 16 man/make_from_prufer.Rd | 10 man/make_full_bipartite_graph.Rd | 8 man/make_full_citation_graph.Rd | 14 man/make_full_graph.Rd | 14 man/make_full_multipartite.Rd |only man/make_graph.Rd | 10 man/make_kautz_graph.Rd | 8 man/make_lattice.Rd | 25 man/make_line_graph.Rd | 8 man/make_ring.Rd | 14 man/make_star.Rd | 14 man/make_tree.Rd | 10 man/make_turan.Rd |only man/make_wheel.Rd |only man/matching.Rd | 4 man/max_cardinality.Rd | 6 man/max_flow.Rd | 6 man/maximal.cliques.Rd | 4 man/maximal.cliques.count.Rd | 4 man/maximal.independent.vertex.sets.Rd | 4 man/maximal_ivs.Rd | 4 man/maximum.bipartite.matching.Rd | 4 man/maximum.cardinality.search.Rd | 4 man/merge_coords.Rd | 4 man/min_cut.Rd | 4 man/min_separators.Rd | 6 man/min_st_separators.Rd | 6 man/minimal.st.separators.Rd | 4 man/minimum.size.separators.Rd | 4 man/minimum.spanning.tree.Rd | 4 man/mod.matrix.Rd | 4 man/modularity.igraph.Rd | 4 man/motifs.Rd | 38 man/mst.Rd | 4 man/multilevel.community.Rd | 4 man/neighborhood.size.Rd | 4 man/neighbors.Rd | 4 man/normalize.Rd | 3 man/optimal.community.Rd | 4 man/page.rank.Rd | 4 man/page_rank.Rd | 6 man/path.Rd | 1 man/path.length.hist.Rd | 4 man/permute.Rd | 7 man/permute.vertices.Rd | 4 man/piecewise.layout.Rd | 4 man/plot.igraph.Rd | 4 man/plotHierarchy.Rd | 4 man/plus-.igraph.Rd | 1 man/power_centrality.Rd | 4 man/predict_edges.Rd | 4 man/preference.game.Rd | 8 man/print.igraph.Rd | 4 man/print.igraph.es.Rd | 4 man/print.igraph.vs.Rd | 4 man/radius.Rd | 6 man/random_walk.Rd | 6 man/read.graph.Rd | 4 man/read_graph.Rd | 6 man/realize_bipartite_degseq.Rd | 6 man/realize_degseq.Rd | 6 man/reciprocity.Rd | 6 man/rep.igraph.Rd | 5 man/reverse_edges.Rd | 7 man/rglplot.Rd | 4 man/running.mean.Rd | 4 man/running_mean.Rd | 4 man/sample_.Rd | 8 man/sample_bipartite.Rd | 4 man/sample_bipartite_gnm.Rd | 12 man/sample_chung_lu.Rd | 6 man/sample_correlated_gnp.Rd | 6 man/sample_correlated_gnp_pair.Rd | 6 man/sample_degseq.Rd | 4 man/sample_dirichlet.Rd | 4 man/sample_dot_product.Rd | 10 man/sample_fitness.Rd | 6 man/sample_fitness_pl.Rd | 11 man/sample_forestfire.Rd | 6 man/sample_gnm.Rd | 8 man/sample_gnp.Rd | 8 man/sample_grg.Rd | 8 man/sample_growing.Rd | 10 man/sample_hierarchical_sbm.Rd | 10 man/sample_hrg.Rd | 6 man/sample_islands.Rd | 6 man/sample_k_regular.Rd | 6 man/sample_last_cit.Rd | 32 man/sample_motifs.Rd | 4 man/sample_pa.Rd | 24 man/sample_pa_age.Rd | 23 man/sample_pref.Rd | 29 man/sample_sbm.Rd | 12 man/sample_seq.Rd | 4 man/sample_smallworld.Rd | 8 man/sample_spanning_tree.Rd | 6 man/sample_sphere_surface.Rd | 4 man/sample_sphere_volume.Rd | 4 man/sample_traits_callaway.Rd | 25 man/sample_tree.Rd | 6 man/sbm.game.Rd | 6 man/scan_stat.Rd | 4 man/set.edge.attribute.Rd | 4 man/set.vertex.attribute.Rd | 4 man/set_edge_attr.Rd | 4 man/set_vertex_attr.Rd | 4 man/set_vertex_attrs.Rd | 4 man/shortest.paths.Rd | 4 man/similarity.Rd | 6 man/similarity.dice.Rd | 4 man/similarity.invlogweighted.Rd | 4 man/similarity.jaccard.Rd | 4 man/simple_cycles.Rd | 35 man/simplify.Rd | 7 man/sir.Rd | 6 man/spinglass.community.Rd | 4 man/split_join_distance.Rd | 4 man/stCuts.Rd | 4 man/stMincuts.Rd | 4 man/st_cuts.Rd | 6 man/st_min_cuts.Rd | 6 man/static.fitness.game.Rd | 4 man/static.power.law.game.Rd | 9 man/stochastic_matrix.Rd | 4 man/strength.Rd | 6 man/sub-.igraph.Rd | 2 man/subcomponent.Rd | 4 man/subgraph.Rd | 4 man/subgraph.centrality.Rd | 4 man/subgraph.edges.Rd | 4 man/subgraph_centrality.Rd | 4 man/subgraph_isomorphic.Rd | 4 man/subgraph_isomorphisms.Rd | 31 man/tail_of.Rd | 4 man/tkplot.Rd | 4 man/tkplot.center.Rd | 4 man/tkplot.fit.to.screen.Rd | 4 man/tkplot.reshape.Rd | 4 man/tkplot.rotate.Rd | 4 man/tkplot.setcoords.Rd | 4 man/to_prufer.Rd | 6 man/topo_sort.Rd | 4 man/topological.sort.Rd | 4 man/transitive_closure.Rd |only man/transitivity.Rd | 4 man/triad.census.Rd | 4 man/triad_census.Rd | 6 man/unfold.tree.Rd | 4 man/unfold_tree.Rd | 4 man/union.Rd | 1 man/union.igraph.Rd | 5 man/upgrade_graph.Rd | 4 man/vertex.Rd | 1 man/vertex.connectivity.Rd | 4 man/vertex.disjoint.paths.Rd | 4 man/vertex_attr.Rd | 4 man/vertex_connectivity.Rd | 4 man/voronoi_cells.Rd | 6 man/walktrap.community.Rd | 4 man/watts.strogatz.game.Rd | 4 man/weighted_cliques.Rd | 6 man/which_multiple.Rd | 13 man/which_mutual.Rd | 6 man/write.graph.Rd | 4 man/write_graph.Rd | 6 src/Makevars.in | 2 src/Makevars.ucrt | 2 src/Makevars.win | 2 src/README.md | 61 src/cpp11.cpp | 1314 +- src/init.cpp | 8 src/rcallback.c |only src/rcallback.dd |only src/rinterface.c | 9127 +++++++++++++++++-- src/rinterface.h | 312 src/rinterface_extra.c | 2997 ++---- src/sources-glue-c.mk | 2 src/test_error_with_source.c |only src/test_error_with_source.dd |only src/vendor/cigraph/interfaces/functions.yaml | 18 src/vendor/cigraph/interfaces/types.yaml | 5 tests/testthat/_snaps/aaa-auto.md | 3689 +++++--- tests/testthat/_snaps/attributes.md | 20 tests/testthat/_snaps/centrality.md | 3 tests/testthat/_snaps/conversion.md | 315 tests/testthat/_snaps/error-formatting.md |only tests/testthat/_snaps/flow.md | 8 tests/testthat/_snaps/games.md | 10 tests/testthat/_snaps/motifs.md |only tests/testthat/_snaps/operators.md | 16 tests/testthat/_snaps/utils-assert-args.md | 2 tests/testthat/helper.R | 27 tests/testthat/test-aaa-auto.R | 9010 +++++++++++++++++-- tests/testthat/test-adjacency.R | 26 tests/testthat/test-assortativity.R | 29 tests/testthat/test-attributes.R | 28 tests/testthat/test-centrality.R | 20 tests/testthat/test-cliques.R | 116 tests/testthat/test-community.R | 30 tests/testthat/test-components.R | 3 tests/testthat/test-conversion.R | 179 tests/testthat/test-cycles.R | 65 tests/testthat/test-error-formatting.R |only tests/testthat/test-fit.R | 2 tests/testthat/test-flow.R | 40 tests/testthat/test-foreign.R | 24 tests/testthat/test-games.R | 20 tests/testthat/test-glet.R | 15 tests/testthat/test-hrg.R | 4 tests/testthat/test-incidence.R | 8 tests/testthat/test-interface.R | 50 tests/testthat/test-iterators.R | 4 tests/testthat/test-layout.R | 108 tests/testthat/test-make.R | 120 tests/testthat/test-minimum.spanning.tree.R | 5 tests/testthat/test-motifs.R | 92 tests/testthat/test-operators.R | 22 tests/testthat/test-other.R | 7 tests/testthat/test-plot.R | 2 tests/testthat/test-structural-properties.R | 101 tests/testthat/test-topology.R | 238 tests/testthat/test-utils-assert-args.R | 7 tests/testthat/test-versions.R | 18 vignettes/igraph.Rmd | 10 vignettes/igraph_ES.rmd | 36 656 files changed, 40340 insertions(+), 10644 deletions(-)
Title: Airborne LiDAR Data Manipulation and Visualization for Forestry
Applications
Description: Airborne LiDAR (Light Detection and Ranging) interface for data
manipulation and visualization. Read/write 'las' and 'laz' files, computation
of metrics in area based approach, point filtering, artificial point reduction,
classification from geographic data, normalization, individual tree segmentation
and other manipulations.
Author: Jean-Romain Roussel [aut, cre, cph],
David Auty [aut, ctb] ,
Florian De Boissieu [ctb] ,
Andrew Sanchez Meador [ctb] for
segment_snags),
Bourdon Jean-Francois [ctb] for
track_sensor),
Gatziolis Demetrios [ctb] for
track_sensor),
Leon Steinmeier [c [...truncated...]
Maintainer: Jean-Romain Roussel <info@r-lidar.com>
Diff between lidR versions 4.3.1 dated 2026-04-07 and 4.3.2 dated 2026-04-21
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ NEWS.md | 4 ++++ R/metrics_point.R | 14 +++++++------- src/LAS_point_metrics.cpp | 6 +++--- tests/testthat/test-classify_ground.R | 33 ++++++++++++++++++--------------- tests/testthat/test-metrics_points.R | 2 +- 7 files changed, 42 insertions(+), 35 deletions(-)
Title: Alt String Implementation
Description: Provides an extendable, performant and multithreaded 'alt-string' implementation backed by 'C++' vectors and strings.
Author: Travers Ching [aut, cre, cph],
Phillip Hazel [ctb] ,
Zoltan Herczeg [ctb, cph] ,
University of Cambridge [cph] ,
Tilera Corporation [cph] ,
Yann Collet [ctb, cph]
Maintainer: Travers Ching <traversc@gmail.com>
Diff between stringfish versions 0.18.0 dated 2026-01-18 and 0.19.0 dated 2026-04-21
stringfish-0.18.0/stringfish/inst/extra_tests |only stringfish-0.18.0/stringfish/man/convert_to_sf.Rd |only stringfish-0.18.0/stringfish/src/sf_disabled.h |only stringfish-0.18.0/stringfish/tests/tests.cpp |only stringfish-0.18.0/stringfish/vignettes/bench_v2.png |only stringfish-0.19.0/stringfish/ChangeLog | 8 stringfish-0.19.0/stringfish/DESCRIPTION | 14 stringfish-0.19.0/stringfish/MD5 | 135 stringfish-0.19.0/stringfish/NAMESPACE | 14 stringfish-0.19.0/stringfish/R/RcppExports.R | 20 stringfish-0.19.0/stringfish/R/sf_functions.R | 89 stringfish-0.19.0/stringfish/R/zz_help_files.R | 188 - stringfish-0.19.0/stringfish/R/zzz.R | 2 stringfish-0.19.0/stringfish/README.md | 95 stringfish-0.19.0/stringfish/configure | 995 ++++++ stringfish-0.19.0/stringfish/configure.ac | 22 stringfish-0.19.0/stringfish/inst/doc/vignette.R | 4 stringfish-0.19.0/stringfish/inst/doc/vignette.html | 197 - stringfish-0.19.0/stringfish/inst/doc/vignette.rmd | 54 stringfish-0.19.0/stringfish/inst/include/rstring_indexer.h |only stringfish-0.19.0/stringfish/inst/include/sf_external.h | 188 - stringfish-0.19.0/stringfish/inst/include/sf_internal |only stringfish-0.19.0/stringfish/inst/include/sf_internal.h | 422 -- stringfish-0.19.0/stringfish/man/convert_to_sf_vector.Rd |only stringfish-0.19.0/stringfish/man/convert_to_slice_store.Rd |only stringfish-0.19.0/stringfish/man/get_string_type.Rd | 6 stringfish-0.19.0/stringfish/man/materialize.Rd | 2 stringfish-0.19.0/stringfish/man/random_strings.Rd | 17 stringfish-0.19.0/stringfish/man/sf_assign.Rd | 2 stringfish-0.19.0/stringfish/man/sf_collapse.Rd | 2 stringfish-0.19.0/stringfish/man/sf_compare.Rd | 4 stringfish-0.19.0/stringfish/man/sf_concat.Rd | 2 stringfish-0.19.0/stringfish/man/sf_ends.Rd | 2 stringfish-0.19.0/stringfish/man/sf_grepl.Rd | 5 stringfish-0.19.0/stringfish/man/sf_gsub.Rd | 5 stringfish-0.19.0/stringfish/man/sf_iconv.Rd | 2 stringfish-0.19.0/stringfish/man/sf_match.Rd | 2 stringfish-0.19.0/stringfish/man/sf_nchar.Rd | 2 stringfish-0.19.0/stringfish/man/sf_paste.Rd | 2 stringfish-0.19.0/stringfish/man/sf_readLines.Rd | 2 stringfish-0.19.0/stringfish/man/sf_split.Rd | 2 stringfish-0.19.0/stringfish/man/sf_starts.Rd | 2 stringfish-0.19.0/stringfish/man/sf_substr.Rd | 2 stringfish-0.19.0/stringfish/man/sf_tolower.Rd | 2 stringfish-0.19.0/stringfish/man/sf_toupper.Rd | 2 stringfish-0.19.0/stringfish/man/sf_trim.Rd | 2 stringfish-0.19.0/stringfish/man/sf_vector.Rd | 9 stringfish-0.19.0/stringfish/man/sf_vector_create.Rd |only stringfish-0.19.0/stringfish/man/sf_writeLines.Rd | 6 stringfish-0.19.0/stringfish/man/slice_store_create.Rd |only stringfish-0.19.0/stringfish/man/slice_store_create_with_size.Rd |only stringfish-0.19.0/stringfish/man/string_identical.Rd | 15 stringfish-0.19.0/stringfish/src/Makevars.in | 2 stringfish-0.19.0/stringfish/src/Makevars.win | 6 stringfish-0.19.0/stringfish/src/PCRE2_wrapper/pcre2_wrapper.cpp | 111 stringfish-0.19.0/stringfish/src/PCRE2_wrapper/pcre2_wrapper.h | 17 stringfish-0.19.0/stringfish/src/RcppExports.cpp | 66 stringfish-0.19.0/stringfish/src/exported_functions |only stringfish-0.19.0/stringfish/src/sf_altrep |only stringfish-0.19.0/stringfish/src/sf_altrep.h | 388 -- stringfish-0.19.0/stringfish/src/sf_encoding_helpers.h |only stringfish-0.19.0/stringfish/src/sf_functions.cpp | 1621 ---------- stringfish-0.19.0/stringfish/src/sf_utility.h |only stringfish-0.19.0/stringfish/tests/regressions.R |only stringfish-0.19.0/stringfish/tests/tests.R | 286 - stringfish-0.19.0/stringfish/vignettes/bench_v3.png |only stringfish-0.19.0/stringfish/vignettes/vignette.rmd | 54 67 files changed, 2221 insertions(+), 2876 deletions(-)
Title: Enhances Interaction with 'ODBC' Databases
Description: Provides simple and powerful interfaces that facilitate interaction
with 'ODBC' data sources. Each data source gets its own unique and dedicated
interface, wrapped around 'RODBC'. Communication settings are remembered
between queries, and are managed silently in the background. The interfaces
support multi-statement 'SQL' scripts, which can be parameterised via
metaprogramming structures and embedded 'R' expressions.
Author: Mike Lee [aut, cre]
Maintainer: Mike Lee <random.deviate@gmail.com>
Diff between SQRL versions 1.0.2 dated 2023-12-02 and 1.0.3 dated 2026-04-21
ChangeLog | 11 DESCRIPTION | 12 MD5 | 20 R/SQRL.R | 2713 +++++++++++++++++++++++++++------------------- build/vignette.rds |binary inst/doc/SQRL_primer.Rnw | 4 inst/doc/SQRL_primer.pdf |binary man/sqrlParams.Rd | 12 man/sqrlScript.Rd | 56 man/sqrlUsage.Rd | 6 vignettes/SQRL_primer.Rnw | 4 11 files changed, 1693 insertions(+), 1145 deletions(-)
Title: Location Identify Tool
Description: Determine the sea area where the fishing boat operates.
The latitude and longitude of geographic coordinates are used to match oceanic areas and economic sea areas.
You can plot the distribution map with dotplot() function.
Please refer to Flanders Marine Institute (2020) <doi:10.14284/403>.
Author: shiao chih hao [aut, cre, ctb],
chang shu ting [aut, ctb],
wang shyh jiun [aut, ctb]
Maintainer: shiao chih hao <chihhao@ofdc.org.tw>
Diff between oceanic versions 0.1.8 dated 2025-01-09 and 0.1.9 dated 2026-04-21
oceanic-0.1.8/oceanic/R/idfcode.R |only oceanic-0.1.8/oceanic/R/idfland.R |only oceanic-0.1.8/oceanic/R/idfport.R |only oceanic-0.1.8/oceanic/R/sixtytoten.R |only oceanic-0.1.8/oceanic/data/port_sf.rda |only oceanic-0.1.8/oceanic/man/idfcode.Rd |only oceanic-0.1.8/oceanic/man/idfland.Rd |only oceanic-0.1.8/oceanic/man/idfport.Rd |only oceanic-0.1.8/oceanic/man/port_sf.Rd |only oceanic-0.1.8/oceanic/man/sixtytoten.Rd |only oceanic-0.1.9/oceanic/DESCRIPTION | 15 +++---- oceanic-0.1.9/oceanic/MD5 | 29 ++++--------- oceanic-0.1.9/oceanic/NAMESPACE | 25 ++++------- oceanic-0.1.9/oceanic/R/data.R | 35 ++++++++++------ oceanic-0.1.9/oceanic/R/idfeez.R | 67 +++++++++++++++----------------- oceanic-0.1.9/oceanic/R/idfocean.R | 60 +++++++++++++--------------- oceanic-0.1.9/oceanic/R/sysdata.rda |only oceanic-0.1.9/oceanic/data/eez_rg.rda |binary oceanic-0.1.9/oceanic/man/eez_rg.Rd | 27 +++++++++++- oceanic-0.1.9/oceanic/man/idfeez.Rd | 4 - oceanic-0.1.9/oceanic/man/idfocean.Rd | 7 +-- 21 files changed, 141 insertions(+), 128 deletions(-)
Title: L-Moments, Censored L-Moments, Trimmed L-Moments, L-Comoments,
and Many Distributions
Description: Extensive functions for Lmoments (LMs) and probability-weighted moments (PWMs),
distribution parameter estimation, LMs for distributions, LM ratio diagrams, multivariate
Lcomoments, and asymmetric (asy) trimmed LMs (TLMs). Maximum likelihood and
maximum product spacings estimation are available. Right-tail and left-tail LM censoring
by threshold or indicator variable are available. LMs of residual (resid) and reversed
(rev) residual life are implemented along with 13 quantile operators for reliability analyses.
Exact analytical bootstrap estimates of order statistics, LMs, and LM var-covars are available.
Harri-Coble Tau34-squared Normality Test is available. Distributions with L, TL, and added
(+) support for right-tail censoring (RC) encompass: Asy Exponential (Exp) Power [L],
Asy Triangular [L], Cauchy [TL], Eta-Mu [L], Exp. [L], Gamma [L], Generalized (Gen) Exp
Poisson [L], Gen Extreme Value [L], Gen Lambda [L, TL], Gen Logistic [L], Gen Normal [L],
Gen Pareto [L+RC, TL], Govindara [...truncated...]
Author: William Asquith [aut, cre]
Maintainer: William Asquith <william.asquith@ttu.edu>
Diff between lmomco versions 2.5.3 dated 2025-09-24 and 2.5.5 dated 2026-04-21
lmomco-2.5.3/lmomco/R/pp.stable.R |only lmomco-2.5.3/lmomco/inst/doc/benford |only lmomco-2.5.5/lmomco/DESCRIPTION | 10 +- lmomco-2.5.5/lmomco/MD5 | 54 +++++------ lmomco-2.5.5/lmomco/NAMESPACE | 7 + lmomco-2.5.5/lmomco/NEWS | 45 ++++++++- lmomco-2.5.5/lmomco/R/lmrdia.R | 89 +++++++++++------- lmomco-2.5.5/lmomco/R/lmrdia46.R | 44 ++++++++- lmomco-2.5.5/lmomco/R/pargev.R | 128 +++++++++++++++++---------- lmomco-2.5.5/lmomco/R/pargno.R | 76 ++++++++++------ lmomco-2.5.5/lmomco/R/parpe3.R | 85 +++++++++++------ lmomco-2.5.5/lmomco/R/plotlmrdia.R | 22 +++- lmomco-2.5.5/lmomco/R/plotlmrdia46.R | 28 ++++- lmomco-2.5.5/lmomco/R/theoTLmoms.R | 10 +- lmomco-2.5.5/lmomco/build/partial.rdb |binary lmomco-2.5.5/lmomco/inst/ACKNOWLEDGEMENTS | 5 - lmomco-2.5.5/lmomco/inst/doc/references.txt | 74 +++++++-------- lmomco-2.5.5/lmomco/inst/doc/t4t6/tau4tau6.R | 1 lmomco-2.5.5/lmomco/inst/newcoes |only lmomco-2.5.5/lmomco/man/lmomco-package.Rd | 9 - lmomco-2.5.5/lmomco/man/lmomgdd.Rd | 8 - lmomco-2.5.5/lmomco/man/lmrdia.Rd | 29 +++++- lmomco-2.5.5/lmomco/man/lmrdia46.Rd | 15 ++- lmomco-2.5.5/lmomco/man/pargev.Rd | 17 +++ lmomco-2.5.5/lmomco/man/pargno.Rd | 31 +++++- lmomco-2.5.5/lmomco/man/parpe3.Rd | 20 ++++ lmomco-2.5.5/lmomco/man/plotlmrdia.Rd | 6 - lmomco-2.5.5/lmomco/man/plotlmrdia46.Rd | 3 28 files changed, 557 insertions(+), 259 deletions(-)
Title: Kinship Analysis with Linked Markers
Description: A 'shiny' application for forensic kinship testing, based on
the 'pedsuite' R packages. 'KLINK' is closely aligned with the (non-R)
software 'Familias' and 'FamLink', but offers several unique features,
including visualisations and automated report generation. The
calculation of likelihood ratios supports pairs of linked markers, and
all common mutation models.
Author: Magnus Dehli Vigeland [aut, cre]
Maintainer: Magnus Dehli Vigeland <m.d.vigeland@medisin.uio.no>
Diff between KLINK versions 1.1.0 dated 2025-05-12 and 1.2.0 dated 2026-04-21
KLINK-1.1.0/KLINK/data/LINKAGEMAP.rda |only KLINK-1.1.0/KLINK/inst/shiny/R/tooltips.R |only KLINK-1.1.0/KLINK/man/LINKAGEMAP.Rd |only KLINK-1.2.0/KLINK/DESCRIPTION | 15 +- KLINK-1.2.0/KLINK/MD5 | 38 +++---- KLINK-1.2.0/KLINK/NAMESPACE | 3 KLINK-1.2.0/KLINK/NEWS.md | 20 +++ KLINK-1.2.0/KLINK/R/KLINK-package.R | 1 KLINK-1.2.0/KLINK/R/data.R | 10 - KLINK-1.2.0/KLINK/R/karyo.R | 69 +++++++++--- KLINK-1.2.0/KLINK/R/linkedLR.R | 2 KLINK-1.2.0/KLINK/R/loadMap.R | 39 +++++-- KLINK-1.2.0/KLINK/R/markerSummary.R | 8 - KLINK-1.2.0/KLINK/R/utils.R | 2 KLINK-1.2.0/KLINK/R/writeResult.R | 86 +-------------- KLINK-1.2.0/KLINK/README.md | 2 KLINK-1.2.0/KLINK/inst/shiny/R/utils.R | 43 +++++++ KLINK-1.2.0/KLINK/inst/shiny/app.R | 130 +++++++++++++++++------- KLINK-1.2.0/KLINK/inst/shiny/help |only KLINK-1.2.0/KLINK/inst/shiny/www/custom.css | 4 KLINK-1.2.0/KLINK/man/figures/screenshot120.png |only KLINK-1.2.0/KLINK/man/loadMap.Rd | 4 22 files changed, 290 insertions(+), 186 deletions(-)
Title: Parallel GLM
Description: Provides a parallel estimation method for generalized linear
models without compiling with a multithreaded LAPACK or BLAS.
Author: Benjamin Christoffersen [aut] ,
Anthony Williams [cph],
Boost developers [cph],
Tom Palmer [aut, cre]
Maintainer: Tom Palmer <remlapmot@hotmail.com>
This is a re-admission after prior archival of version 0.1.7 dated 2021-10-14
Diff between parglm versions 0.1.7 dated 2021-10-14 and 0.1.8 dated 2026-04-21
.aspell |only DESCRIPTION | 51 ++++++++++++++++++++++++-------------------------- MD5 | 22 +++++++++++---------- NEWS.md | 9 +++++++- R/parglm.R | 21 +++++--------------- README.md | 15 ++++++-------- build/vignette.rds |binary inst/WORDLIST |only man/parglm.Rd | 48 ++++++++++++++++++++++++++++++++--------------- man/parglm.control.Rd | 20 ++++++++++--------- src/LAPACK_wrappers.h | 2 - src/Makevars | 1 src/Makevars.win |only src/thread_pool.h | 4 +-- 14 files changed, 106 insertions(+), 87 deletions(-)
Title: Raw Accelerometer Data Analysis
Description: A tool to process and analyse data collected with wearable raw acceleration sensors as described in Migueles and colleagues (JMPB 2019), and van Hees and colleagues (JApplPhysiol 2014; PLoSONE 2015). The package has been developed and tested for binary data from 'GENEActiv' <https://activinsights.com/>, binary (.gt3x) and .csv-export data from 'Actigraph' <https://ametris.com/> devices, and binary (.cwa) and .csv-export data from 'Axivity' <https://axivity.com>. These devices are currently widely used in research on human daily physical activity. Further, the package can handle accelerometer data file from any other sensor brand providing that the data is stored in csv format. Also the package allows for external function embedding.
Author: Vincent T van Hees [aut, cre],
Jairo H Migueles [aut] ,
Severine Sabia [ctb],
Matthew R Patterson [ctb],
Zhou Fang [ctb],
Joe Heywood [ctb],
Joan Capdevila Pujol [ctb],
Lena Kushleyeva [ctb],
Mathilde Chen [ctb],
Manasa Yerramalla [ctb],
Patrick Bos [...truncated...]
Maintainer: Vincent T van Hees <v.vanhees@accelting.com>
Diff between GGIR versions 3.3-4 dated 2026-01-27 and 3.3-6 dated 2026-04-21
GGIR-3.3-4/GGIR/tests/testthat/test_chainof5parts.R |only GGIR-3.3-6/GGIR/DESCRIPTION | 12 GGIR-3.3-6/GGIR/MD5 | 68 +-- GGIR-3.3-6/GGIR/NEWS.md | 24 + GGIR-3.3-6/GGIR/R/check_params.R | 5 GGIR-3.3-6/GGIR/R/detectEventBouts.R | 103 ++-- GGIR-3.3-6/GGIR/R/g.analyse.avday.R | 2 GGIR-3.3-6/GGIR/R/g.impute.R | 354 ++++++++-------- GGIR-3.3-6/GGIR/R/g.part6.R | 4 GGIR-3.3-6/GGIR/R/g.report.part4.R | 12 GGIR-3.3-6/GGIR/R/g.report.part5.R | 7 GGIR-3.3-6/GGIR/R/g.report.part5_dictionary.R | 9 GGIR-3.3-6/GGIR/R/load_params.R | 2 GGIR-3.3-6/GGIR/build/vignette.rds |binary GGIR-3.3-6/GGIR/inst/doc/ExternalFunction.Rmd | 2 GGIR-3.3-6/GGIR/inst/doc/ExternalFunction.html | 2 GGIR-3.3-6/GGIR/inst/doc/GGIRParameters.Rmd | 3 GGIR-3.3-6/GGIR/inst/doc/GGIRParameters.html | 201 ++++----- GGIR-3.3-6/GGIR/inst/doc/GGIRoutput.Rmd | 6 GGIR-3.3-6/GGIR/inst/doc/GGIRoutput.html | 15 GGIR-3.3-6/GGIR/inst/doc/StepCadenceAnalysis.Rmd | 6 GGIR-3.3-6/GGIR/inst/doc/StepCadenceAnalysis.html | 11 GGIR-3.3-6/GGIR/inst/doc/readmyacccsv.Rmd | 2 GGIR-3.3-6/GGIR/inst/doc/readmyacccsv.html | 8 GGIR-3.3-6/GGIR/man/GGIR-package.Rd | 4 GGIR-3.3-6/GGIR/man/GGIR.Rd | 15 GGIR-3.3-6/GGIR/tests/testthat/test_StudyDatesFile.R | 65 ++ GGIR-3.3-6/GGIR/tests/testthat/test_detectEventBouts.R | 19 GGIR-3.3-6/GGIR/tests/testthat/test_integration.R |only GGIR-3.3-6/GGIR/tests/testthat/test_load_check_params.R | 2 GGIR-3.3-6/GGIR/tests/testthat/test_part6.R | 2 GGIR-3.3-6/GGIR/vignettes/ExternalFunction.Rmd | 2 GGIR-3.3-6/GGIR/vignettes/GGIRParameters.Rmd | 3 GGIR-3.3-6/GGIR/vignettes/GGIRoutput.Rmd | 6 GGIR-3.3-6/GGIR/vignettes/StepCadenceAnalysis.Rmd | 6 GGIR-3.3-6/GGIR/vignettes/readmyacccsv.Rmd | 2 36 files changed, 557 insertions(+), 427 deletions(-)
Title: Statistical Tools for the Analysis of Multi Environment
Agronomic Trials
Description: Provides tools for the analysis of multi-environment agronomic
trials, with a specific focus on plant breeding experiments.
Implements the Additive Main effects and Multiplicative Interaction
(AMMI) model (Gauch, 1992, ISBN:9780444892409) and the Site Regression
(SREG) model (Cornelius, 1996, <doi:10.1201/9780367802226>). To ensure
reliable results even with outliers or missing data, it includes robust
versions of AMMI (Rodrigues et al., 2016,
<doi:10.1093/bioinformatics/btv533>) and SREG (Angelini et al., 2022,
<doi:10.1080/15427528.2022.2051217>). Furthermore, the package offers
advanced imputation techniques for multi-environment data, covering
classical methodologies (Arciniegas-Alarcón et al., 2014,
<doi:10.2478/bile-2014-0006>) and recently published imputation methods
for MET data (Angelini et al., 2024, <doi:10.1007/s10681-024-03344-z>).
Author: Julia Angelini [aut, cre] ,
Marcos Prunello [aut] ,
Gerardo Cervigni [aut]
Maintainer: Julia Angelini <jangelini_93@hotmail.com>
Diff between geneticae versions 1.0.0 dated 2026-04-16 and 1.0.1 dated 2026-04-21
DESCRIPTION | 30 +++++------ MD5 | 52 +++++++++---------- NEWS.md | 10 ++- R/EM_AMMI.R | 2 R/EM_GGE.R | 10 --- R/Eigenvector.R | 47 +++++------------ R/W_GabrielEigen.R | 65 +++++++---------------- R/impute.R | 15 +++-- R/rAMMIModel.R | 74 +++++++++++++++++++++++---- R/rAMMIPlot.R | 61 ++++++++++++++++------ R/rSREGModel.R | 3 - R/rSREGPlot.R | 6 +- README.md | 55 ++++++++++++-------- inst/WORDLIST | 84 ++----------------------------- inst/doc/a-tutorial.Rmd | 69 +++++++++++-------------- inst/doc/a-tutorial.html | 48 ++++++++--------- inst/doc/b-shiny.html | 4 - man/EM.AMMI.Rd | 2 man/WGabriel.Rd | 4 - man/figures/README-unnamed-chunk-4-1.png |binary man/imputation.Rd | 15 +++-- man/rAMMIModel.Rd | 73 +++++++++++++++++++++++--- man/rAMMIPlot.Rd | 62 ++++++++++++++++------ man/rSREGModel.Rd | 2 man/rSREGPlot.Rd | 6 +- tests/spelling.R | 2 vignettes/a-tutorial.Rmd | 69 +++++++++++-------------- 27 files changed, 463 insertions(+), 407 deletions(-)
Title: Data and Code for Empirical Research in Accounting
Description: Handy functions and data to support the course book 'Empirical Research in Accounting: Tools and Methods' (1st ed.). Chapman and Hall/CRC. <doi:10.1201/9781003456230> and <https://iangow.github.io/far_book/>.
Author: Ian Gow [aut, cre]
Maintainer: Ian Gow <iandgow@gmail.com>
This is a re-admission after prior archival of version 1.0.0 dated 2025-11-17
Diff between farr versions 1.0.0 dated 2025-11-17 and 1.0.1 dated 2026-04-21
DESCRIPTION | 6 ++--- MD5 | 26 ++++++++++++----------- NAMESPACE | 1 NEWS.md | 4 ++- R/duckdb_to_parquet.R |only R/get_ff_ind.R | 4 +-- R/get_me_breakpoints.R | 2 + R/get_size_rets_monthly.R | 8 +++---- build/partial.rdb |binary inst/WORDLIST | 35 +++++++++++++++++++++++++++---- man/duckdb_to_parquet.Rd |only man/get_ff_ind.Rd | 4 +-- man/get_me_breakpoints.Rd | 2 + tests/testthat/test-get_ff_ind.R | 2 + tests/testthat/test-get_me_breakpoints.R | 6 +++-- 15 files changed, 70 insertions(+), 30 deletions(-)
Title: Prompt Large Language Models and Enhance Their Functionality
Description: Easily construct prompts and associated logic for interacting with
large language models (LLMs).
'tidyprompt' introduces the concept of prompt wraps, which are building
blocks that you can use to quickly turn a simple prompt into a complex
one. Prompt wraps do not just modify the prompt text, but also add
extraction and validation functions that will be applied to the response
of the LLM. This ensures that the user gets the desired output.
'tidyprompt' can add various features to prompts and their evaluation
by LLMs, such as structured output, automatic feedback, retries, reasoning
modes, autonomous R function calling, and R code generation and evaluation.
It is designed to be compatible with any LLM provider that offers
chat completion.
Author: Luka Koning [aut, cre, cph],
Tjark Van de Merwe [aut, cph],
Kennispunt Twente [fnd]
Maintainer: Luka Koning <koningluka@gmail.com>
Diff between tidyprompt versions 0.3.0 dated 2025-11-30 and 0.4.0 dated 2026-04-21
DESCRIPTION | 18 MD5 | 151 ++- NAMESPACE | 2 NEWS.md | 248 +++-- R/answer_as_dataframe.R |only R/answer_as_json.R | 14 R/answer_as_numeric.R |only R/answer_using_r.R | 19 R/answer_using_sql.R | 5 R/answer_using_tools.R | 247 ++++- R/chat_history.R | 10 R/helper_ellmer_json_compatibility.R | 193 +++- R/helper_ellmer_tool_compatibility.R | 254 ++++-- R/internal_extraction.R | 2 R/internal_request_llm_provider.R | 58 + R/internal_test_helpers.R | 2 R/llm_break.R | 2 R/llm_provider.R | 68 + R/llm_providers.R | 761 ++++++++++++++++-- R/misc_add_image.R | 76 - R/misc_llm_verify.R | 2 R/misc_quit_if.R | 2 R/persistent_chat.R | 6 R/send_prompt.R | 128 ++- R/tidyprompt.R | 12 README.md | 21 inst/doc/getting_started.Rmd | 799 +++++++++---------- inst/doc/getting_started.html | 16 inst/examples/answer_as_dataframe.R |only inst/examples/answer_as_numeric.R |only inst/examples/send_prompt.R | 4 inst/examples/skim_with_labels_and_levels.R | 16 man/add_image.Rd | 9 man/add_text.Rd | 2 man/answer_as_boolean.Rd | 4 man/answer_as_category.Rd | 4 man/answer_as_dataframe.Rd |only man/answer_as_integer.Rd | 4 man/answer_as_json.Rd | 4 man/answer_as_list.Rd | 4 man/answer_as_multi_category.Rd | 4 man/answer_as_named_list.Rd | 4 man/answer_as_numeric.Rd |only man/answer_as_regex_match.Rd | 4 man/answer_as_text.Rd | 4 man/answer_by_chain_of_thought.Rd | 2 man/answer_by_react.Rd | 2 man/answer_using_r.Rd | 2 man/answer_using_sql.Rd | 2 man/answer_using_tools.Rd | 16 man/chat_history.Rd | 2 man/llm_provider_ellmer.Rd | 11 man/prompt_wrap.Rd | 2 man/quit_if.Rd | 2 man/send_prompt.Rd | 28 man/set_system_prompt.Rd | 2 man/skim_with_labels_and_levels.Rd | 16 man/tidyprompt-package.Rd | 2 man/tools_add_docs.Rd | 4 man/tools_get_docs.Rd | 422 +++++----- tests/testthat/helper-ellmer.R | 69 + tests/testthat/test-answer-as-json.R | 66 + tests/testthat/test-answer_as_dataframe.R |only tests/testthat/test-answer_as_numeric.R |only tests/testthat/test-answer_using_tools.R | 385 +++++++++ tests/testthat/test-chat_history.R | 13 tests/testthat/test-ellmer_add_image.R | 112 ++ tests/testthat/test-ellmer_builtin_tool.R |only tests/testthat/test-ellmer_clone_semantics.R |only tests/testthat/test-ellmer_json_compatibility.R | 46 + tests/testthat/test-ellmer_param_warning.R |only tests/testthat/test-ellmer_streaming.R | 1 tests/testthat/test-ellmer_streaming_harden.R |only tests/testthat/test-ellmer_structured_native.R |only tests/testthat/test-ellmer_tool_compatibility.R | 151 +++ tests/testthat/test-ellmer_tool_optional_args.R |only tests/testthat/test-ellmer_tool_scope.R |only tests/testthat/test-ellmer_turn_construction.R |only tests/testthat/test-ellmer_type_from_schema.R |only tests/testthat/test-general.R | 3 tests/testthat/test-llm_provider.R | 140 +++ tests/testthat/test-llm_provider_ellmer_multimodal.R | 103 ++ tests/testthat/test-persistent_chat_ellmer.R |only tests/testthat/test-request_llm_provider.R |only tests/testthat/test-send_prompt.R | 545 ++++++++++++ vignettes/getting_started.Rmd | 799 +++++++++---------- 86 files changed, 4512 insertions(+), 1619 deletions(-)
Title: Hierarchical and Variation Partitioning for Canonical Analysis
Description: This function conducts variation partitioning and hierarchical partitioning to calculate the unique, shared (referred as to "common") and individual contributions of each predictor (or matrix) towards explained variation (R-square and adjusted R-square) on canonical analysis (RDA,CCA and db-RDA), applying the algorithm of Lai J.,Zou Y., Zhang J.,Peres-Neto P.(2022) Generalizing hierarchical and variation partitioning in multiple regression and canonical analyses using the rdacca.hp R package.Methods in Ecology and Evolution,13: 782-788 <DOI:10.1111/2041-210X.13800>.
Author: Jiangshan Lai [aut, cre] ,
Kim Nimon [aut],
Yao Liu [aut],
Pedro Peres-Neto [aut]
Maintainer: Jiangshan Lai <lai@njfu.edu.cn>
Diff between rdacca.hp versions 1.1-2 dated 2026-04-05 and 1.1-3 dated 2026-04-21
DESCRIPTION | 9 +++++---- MD5 | 6 +++--- R/rdacca.hp.r | 21 +++++++++++++++++---- man/rdacca.hp.Rd | 3 +++ 4 files changed, 28 insertions(+), 11 deletions(-)
Title: Theory-Driven Item Response Theory (IRT) Models
Description: IRT-M is a semi-supervised approach based on Bayesian Item Response Theory
that produces theoretically identified underlying dimensions from input data
and a constraints matrix. The methodology is fully described in 'Morucci et al. (2024),
"Measurement That Matches Theory: Theory-Driven Identification in Item Response Theory Models"'.
Details are available at <https://www.cambridge.org/core/journals/american-political-science-review/article/measurement-that-matches-theory-theorydriven-identification-in-item-response-theory-models/395DA1DFE3DCD7B866DC053D7554A30B>.
Author: Marco Morucci [aut],
Margaret Foster [aut] ,
David Siegel [aut, cre]
Maintainer: David Siegel <david.siegel@duke.edu>
Diff between IRTM versions 0.0.1.1 dated 2025-04-19 and 0.0.1.2 dated 2026-04-21
DESCRIPTION | 17 - MD5 | 20 - NEWS.md |only R/constrained_IRT.R | 51 ++- R/pair_gen_anchors.R | 16 - inst/doc/introduction_synth.R | 32 +- inst/doc/introduction_synth.Rmd | 45 +-- inst/doc/introduction_synth.html | 549 +++++++++++++++++++-------------------- tests/testthat.R | 80 ----- tests/testthat/test-irm.R | 27 + vignettes/Basic_continuous_use.R |only vignettes/introduction_synth.Rmd | 45 +-- 12 files changed, 417 insertions(+), 465 deletions(-)
Title: A S3 Class for Vectors of 64bit Integers
Description: Package 'bit64' provides serializable S3 atomic 64bit (signed) integers.
These are useful for handling database keys and exact counting in +-2^63.
WARNING: do not use them as replacement for 32bit integers, integer64 are not
supported for subscripting by R-core and they have different semantics when
combined with double, e.g. integer64 + double => integer64.
Class integer64 can be used in vectors, matrices, arrays and data.frames.
Methods are available for coercion from and to logicals, integers, doubles,
characters and factors as well as many elementwise and summary functions.
Many fast algorithmic operations such as 'match' and 'order' support inter-
active data exploration and manipulation and optionally leverage caching.
Author: Michael Chirico [aut, cre],
Jens Oehlschlaegel [aut],
Leonardo Silvestri [ctb],
Ofek Shilon [ctb],
Christian Ullerich [ctb]
Maintainer: Michael Chirico <michaelchirico4@gmail.com>
Diff between bit64 versions 4.6.0-1 dated 2025-01-16 and 4.8.0 dated 2026-04-21
bit64-4.6.0-1/bit64/NEWS |only bit64-4.6.0-1/bit64/inst |only bit64-4.6.0-1/bit64/man/table.integer64.Rd |only bit64-4.6.0-1/bit64/man/xor.integer64.Rd |only bit64-4.8.0/bit64/DESCRIPTION | 31 bit64-4.8.0/bit64/MD5 | 128 bit64-4.8.0/bit64/NAMESPACE | 173 bit64-4.8.0/bit64/NEWS.md |only bit64-4.8.0/bit64/R/bit64-package.R | 135 bit64-4.8.0/bit64/R/cache.R | 379 - bit64-4.8.0/bit64/R/data.R | 4 bit64-4.8.0/bit64/R/hash64.R | 214 bit64-4.8.0/bit64/R/highlevel64.R | 3963 +++++++++--------- bit64-4.8.0/bit64/R/integer64.R | 2152 ++++----- bit64-4.8.0/bit64/R/matrix64.R | 144 bit64-4.8.0/bit64/R/ops64.R |only bit64-4.8.0/bit64/R/patch64.R | 73 bit64-4.8.0/bit64/R/setops64.R |only bit64-4.8.0/bit64/R/sort64.R | 536 +- bit64-4.8.0/bit64/R/sortuse64.R | 569 +- bit64-4.8.0/bit64/R/zzz.R | 158 bit64-4.8.0/bit64/man/as.character.integer64.Rd | 35 bit64-4.8.0/bit64/man/as.data.frame.integer64.Rd | 6 bit64-4.8.0/bit64/man/as.integer64.character.Rd | 26 bit64-4.8.0/bit64/man/benchmark64.Rd | 27 bit64-4.8.0/bit64/man/bit64-package.Rd | 76 bit64-4.8.0/bit64/man/bit64S3.Rd | 18 bit64-4.8.0/bit64/man/c.integer64.Rd | 14 bit64-4.8.0/bit64/man/cache.Rd | 18 bit64-4.8.0/bit64/man/cumsum.integer64.Rd | 4 bit64-4.8.0/bit64/man/extract.replace.integer64.Rd | 13 bit64-4.8.0/bit64/man/factor.Rd |only bit64-4.8.0/bit64/man/format.integer64.Rd | 5 bit64-4.8.0/bit64/man/hashcache.Rd | 10 bit64-4.8.0/bit64/man/hashmap.Rd | 41 bit64-4.8.0/bit64/man/is.sorted.integer64.Rd | 12 bit64-4.8.0/bit64/man/keypos.Rd | 1 bit64-4.8.0/bit64/man/match.integer64.Rd | 31 bit64-4.8.0/bit64/man/matrix64.Rd | 41 bit64-4.8.0/bit64/man/ops64.Rd |only bit64-4.8.0/bit64/man/optimizer64.data.Rd | 4 bit64-4.8.0/bit64/man/plusclass.Rd | 4 bit64-4.8.0/bit64/man/qtile.Rd | 4 bit64-4.8.0/bit64/man/ramsort.integer64.Rd | 10 bit64-4.8.0/bit64/man/rep.integer64.Rd | 2 bit64-4.8.0/bit64/man/seq.integer64.Rd | 38 bit64-4.8.0/bit64/man/sets.Rd |only bit64-4.8.0/bit64/man/sort.integer64.Rd | 10 bit64-4.8.0/bit64/man/sortnut.Rd | 6 bit64-4.8.0/bit64/man/sum.integer64.Rd | 7 bit64-4.8.0/bit64/man/table.Rd |only bit64-4.8.0/bit64/man/unipos.Rd | 6 bit64-4.8.0/bit64/man/unique.integer64.Rd | 2 bit64-4.8.0/bit64/src/hash64.c | 9 bit64-4.8.0/bit64/src/init.c | 10 bit64-4.8.0/bit64/src/integer64.c | 325 - bit64-4.8.0/bit64/src/integer64.h | 10 bit64-4.8.0/bit64/src/sort64.c | 195 bit64-4.8.0/bit64/src/sortuse64.c | 105 bit64-4.8.0/bit64/tests/testthat.R | 1 bit64-4.8.0/bit64/tests/testthat/helper.R | 34 bit64-4.8.0/bit64/tests/testthat/test-bit64-package.R | 246 - bit64-4.8.0/bit64/tests/testthat/test-cache.R |only bit64-4.8.0/bit64/tests/testthat/test-hash64.R | 107 bit64-4.8.0/bit64/tests/testthat/test-highlevel64.R | 480 ++ bit64-4.8.0/bit64/tests/testthat/test-integer64.R | 1578 ++++++- bit64-4.8.0/bit64/tests/testthat/test-matrix64.R | 213 bit64-4.8.0/bit64/tests/testthat/test-ops64.R |only bit64-4.8.0/bit64/tests/testthat/test-setops64.R |only bit64-4.8.0/bit64/tests/testthat/test-sort64.R | 427 + bit64-4.8.0/bit64/tests/testthat/test-sortuse64.R |only bit64-4.8.0/bit64/tests/testthat/test-zzz.R |only 72 files changed, 7673 insertions(+), 5197 deletions(-)
Title: Fit Varying Coefficient Models with Bayesian Additive Regression
Trees
Description: Fits linear varying coefficient (VC) models, which assert a linear relationship between an outcome and several covariates but allow that relationship (i.e., the coefficients or slopes in the linear regression) to change as functions of additional variables known as effect modifiers, by approximating the coefficient functions with Bayesian Additive Regression Trees. Implements a Metropolis-within-Gibbs sampler to simulate draws from the posterior over coefficient function evaluations. VC models with independent observations or repeated observations can be fit. For more details see Deshpande et al. (2026) <doi:10.1214/24-BA1470>.
Author: Sameer K. Deshpande [aut, cre] ,
Ray Bai [aut] ,
Cecilia Balocchi [aut] ,
Jennifer Starling [aut],
Jordan Weiss [aut]
Maintainer: Sameer K. Deshpande <sameer.deshpande@wisc.edu>
Diff between VCBART versions 1.2.4 dated 2025-12-09 and 1.2.5 dated 2026-04-21
DESCRIPTION | 10 +++++----- MD5 | 10 +++++----- inst/CITATION | 6 +++--- man/VCBART_ind.Rd | 4 ++-- src/Makevars | 5 ++++- src/Makevars.win | 4 +++- 6 files changed, 22 insertions(+), 17 deletions(-)
Title: Embedded JavaScript and WebAssembly Engine for R
Description: An R interface to V8 <https://v8.dev>: Google's open source JavaScript
and WebAssembly engine. This package can be compiled either with V8 or NodeJS
when built as a shared library.
Author: Jeroen Ooms [aut, cre] ,
George Stagg [ctb] ,
Jan Marvin Garbuszus [ctb]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>
Diff between V8 versions 8.1.0 dated 2026-04-12 and 8.2.0 dated 2026-04-21
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ NEWS | 3 +++ build/partial.rdb |binary inst/doc/npm.html | 4 ++-- inst/doc/v8_intro.html | 6 +++--- tools/winlibs.R | 6 +++--- 7 files changed, 20 insertions(+), 17 deletions(-)
Title: A Simple Package for Testing R Packages
Description: Provides two convenience functions assert() and test_pkg() to
facilitate testing R packages.
Author: Yihui Xie [aut, cre] ,
Tomas Kalibera [ctb],
Steven Mortimer [ctb]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between testit versions 0.17 dated 2026-03-06 and 0.18 dated 2026-04-21
testit-0.17/testit/tests/testit/test-assert.R |only testit-0.18/testit/DESCRIPTION | 6 +- testit-0.18/testit/MD5 | 13 +++-- testit-0.18/testit/R/utils.R | 12 ++--- testit-0.18/testit/tests/testit/test-snapshots-advanced.md | 12 +++-- testit-0.18/testit/tests/testit/test-snapshots-basic.md | 13 ++++- testit-0.18/testit/tests/testit/test-testit.R |only testit-0.18/testit/tests/testit/test-utils.R | 29 +++++++++++++ testit-0.18/testit/tests/testit/test-utils.md |only 9 files changed, 62 insertions(+), 23 deletions(-)
Title: Exact Sequential Analysis for Poisson and Binomial Data
Description: Functions to calculate exact critical values, statistical power, expected time to signal, and required sample sizes for performing exact sequential analysis. All these calculations can be done for either Poisson or binomial data, for continuous or group sequential analyses, and for different types of rejection boundaries. In case of group sequential analyses, the group sizes do not have to be specified in advance and the alpha spending can be arbitrarily settled. For regression versions of the methods, Monte Carlo and asymptotic methods are used.
Author: Ivair Ramos Silva [aut, cre],
Martin Kulldorff [aut]
Maintainer: Ivair Ramos Silva <ivair@ufop.edu.br>
Diff between Sequential versions 4.5.2 dated 2025-12-01 and 4.6.0 dated 2026-04-21
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- R/Analyze.Multinomial.R | 12 +++++++----- R/AnalyzeSetUp.Multinomial.R | 8 +++----- man/AnalyzeSetUp.Multinomial.Rd | 4 +--- man/Sequential-package.Rd | 7 +++++-- 6 files changed, 25 insertions(+), 24 deletions(-)
Title: Query 'SWI'-'Prolog' from R
Description: This R package connects to SWI-Prolog, <https://www.swi-prolog.org/>, so that R can send deterministic and non-deterministic queries to prolog (consult, query/submit, once, findall).
Author: Matthias Gondan [aut, com, cre] ,
European Commission [fnd]
Maintainer: Matthias Gondan <Matthias.Gondan-Rochon@uibk.ac.at>
Diff between rolog versions 0.9.25 dated 2026-02-24 and 0.9.26 dated 2026-04-21
DESCRIPTION | 12 ++--- MD5 | 8 +-- NEWS.md | 4 + inst/doc/rolog.html | 10 ++-- src/rolog.cpp | 106 +++++++++++++++++++++++++++++++++++++++------------- 5 files changed, 99 insertions(+), 41 deletions(-)
Title: 'Rcpp' Integration for the 'Armadillo' Templated Linear Algebra
Library
Description: 'Armadillo' is a templated C++ linear algebra library aiming towards
a good balance between speed and ease of use. It provides high-level syntax and
functionality deliberately similar to Matlab. It is useful for algorithm development
directly in C++, or quick conversion of research code into production environments.
It provides efficient classes for vectors, matrices and cubes where dense and sparse
matrices are supported. Integer, floating point and complex numbers are supported.
A sophisticated expression evaluator (based on template meta-programming) automatically
combines several operations to increase speed and efficiency. Dynamic evaluation
automatically chooses optimal code paths based on detected matrix structures.
Matrix decompositions are provided through integration with LAPACK, or one of its
high performance drop-in replacements (such as 'MKL' or 'OpenBLAS'). It can
automatically use 'OpenMP' multi-threading (parallelisation) to speed up
computationally expensive operations [...truncated...]
Author: Dirk Eddelbuettel [aut, cre] ,
Romain Francois [aut] ,
Doug Bates [aut] ,
Binxiang Ni [aut],
Conrad Sanderson [aut]
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppArmadillo versions 15.2.4-1 dated 2026-03-17 and 15.2.6-1 dated 2026-04-21
RcppArmadillo-15.2.4-1/RcppArmadillo/inst/doc/RcppArmadillo-intro.Rnw |only RcppArmadillo-15.2.4-1/RcppArmadillo/inst/doc/RcppArmadillo-sparseMatrix.Rnw |only RcppArmadillo-15.2.4-1/RcppArmadillo/inst/include/current |only RcppArmadillo-15.2.4-1/RcppArmadillo/inst/include/legacy |only RcppArmadillo-15.2.4-1/RcppArmadillo/vignettes/RcppArmadillo-intro.Rnw |only RcppArmadillo-15.2.4-1/RcppArmadillo/vignettes/RcppArmadillo-sparseMatrix.Rnw |only RcppArmadillo-15.2.4-1/RcppArmadillo/vignettes/pdf |only RcppArmadillo-15.2.6-1/RcppArmadillo/ChangeLog | 67 RcppArmadillo-15.2.6-1/RcppArmadillo/DESCRIPTION | 18 RcppArmadillo-15.2.6-1/RcppArmadillo/MD5 | 1976 +++------- RcppArmadillo-15.2.6-1/RcppArmadillo/README.md | 11 RcppArmadillo-15.2.6-1/RcppArmadillo/build/partial.rdb |binary RcppArmadillo-15.2.6-1/RcppArmadillo/build/vignette.rds |binary RcppArmadillo-15.2.6-1/RcppArmadillo/cleanup | 1 RcppArmadillo-15.2.6-1/RcppArmadillo/configure | 18 RcppArmadillo-15.2.6-1/RcppArmadillo/configure.ac | 2 RcppArmadillo-15.2.6-1/RcppArmadillo/inst/NEWS.Rd | 27 RcppArmadillo-15.2.6-1/RcppArmadillo/inst/doc/RcppArmadillo-intro.pdf |binary RcppArmadillo-15.2.6-1/RcppArmadillo/inst/doc/RcppArmadillo-intro.pdf.asis |only RcppArmadillo-15.2.6-1/RcppArmadillo/inst/doc/RcppArmadillo-sparseMatrix.pdf |binary RcppArmadillo-15.2.6-1/RcppArmadillo/inst/doc/RcppArmadillo-sparseMatrix.pdf.asis |only RcppArmadillo-15.2.6-1/RcppArmadillo/inst/include/RcppArmadillo.h | 5 RcppArmadillo-15.2.6-1/RcppArmadillo/inst/include/RcppArmadillo/interface/RcppArmadilloForward.h | 39 RcppArmadillo-15.2.6-1/RcppArmadillo/inst/include/RcppArmadillo/version/arma.h | 62 RcppArmadillo-15.2.6-1/RcppArmadillo/inst/include/RcppArmadilloExtensions/rmultinom.h | 79 RcppArmadillo-15.2.6-1/RcppArmadillo/inst/include/armadillo | 944 ++++ RcppArmadillo-15.2.6-1/RcppArmadillo/inst/include/armadillo_bits |only RcppArmadillo-15.2.6-1/RcppArmadillo/inst/tinytest/test_rmultinom.R | 27 RcppArmadillo-15.2.6-1/RcppArmadillo/vignettes/RcppArmadillo-intro.pdf.asis |only RcppArmadillo-15.2.6-1/RcppArmadillo/vignettes/RcppArmadillo-sparseMatrix.pdf.asis |only 30 files changed, 1748 insertions(+), 1528 deletions(-)
Title: Named Capture to Data Tables
Description: User-friendly functions for extracting a data
table (row for each match, column for each group)
from non-tabular text data using regular expressions,
and for melting columns that match a regular expression.
Patterns are defined using a readable syntax
that makes it easy to build complex patterns
in terms of simpler, re-usable sub-patterns.
Named R arguments are translated to column names
in the output; capture groups without names are used
internally in order to provide a standard interface
to three regular expression 'C' libraries
('PCRE', 'RE2', 'ICU').
Output can also include numeric columns via
user-specified type conversion functions.
Author: Toby Hocking [aut, cre]
Maintainer: Toby Hocking <toby.hocking@r-project.org>
Diff between nc versions 2026.2.20 dated 2026-02-26 and 2026.4.20 dated 2026-04-21
nc-2026.2.20/nc/inst/extdata/invalid.R |only nc-2026.2.20/nc/inst/extdata/valid.R |only nc-2026.4.20/nc/DESCRIPTION | 6 - nc-2026.4.20/nc/MD5 | 31 +++---- nc-2026.4.20/nc/NEWS | 6 + nc-2026.4.20/nc/R/before_match.R | 18 ++-- nc-2026.4.20/nc/build/vignette.rds |binary nc-2026.4.20/nc/inst/doc/v0-overview.html | 4 nc-2026.4.20/nc/inst/doc/v1-capture-first.html | 18 ++-- nc-2026.4.20/nc/inst/doc/v2-capture-all.html | 4 nc-2026.4.20/nc/inst/doc/v3-capture-melt.html | 4 nc-2026.4.20/nc/inst/doc/v4-comparisons.html | 4 nc-2026.4.20/nc/inst/doc/v5-helpers.html | 4 nc-2026.4.20/nc/inst/doc/v6-engines.html | 12 +- nc-2026.4.20/nc/inst/doc/v7-capture-glob.html | 84 +++++++++---------- nc-2026.4.20/nc/inst/extdata/data.table.Archive.html |only nc-2026.4.20/nc/man/before_match.Rd | 7 + nc-2026.4.20/nc/tests/testthat/test-CRAN-all.R | 55 +++++++++++- 18 files changed, 158 insertions(+), 99 deletions(-)
Title: Iota Inter Coder Reliability for Content Analysis
Description: Routines and tools for assessing the quality of content
analysis on the basis of the Iota Reliability Concept. The concept is
inspired by item response theory and can be applied to any kind of
content analysis which uses a standardized coding scheme and discrete
categories. It is also applicable for content analysis conducted by
artificial intelligence. The package provides reliability measures
for a complete scale as well as for every single category. Analysis of
subgroup-invariance and error corrections are implemented. This
information can support the development process of a coding scheme and
allows a detailed inspection of the quality of the generated data.
Equations and formulas working in this package are part of Berding et
al. (2022)<doi:10.3389/feduc.2022.818365> and Berding and Pargmann
(2022) <doi:10.30819/5581>.
Author: Berding Florian [aut, cre] ,
Pargmann Julia [ctb]
Maintainer: Berding Florian <florian.berding@uni-hamburg.de>
Diff between iotarelr versions 0.1.7 dated 2026-01-12 and 0.1.8 dated 2026-04-21
DESCRIPTION | 6 MD5 | 29 NEWS.md | 8 R/additional_functions.R | 9 R/plots.R | 4 README.md | 8 inst/doc/Old_01_How_to_use_Iota1.html | 4 inst/doc/V_02_Estimating_Consequences_for_Subsequent_Analyses.html | 4 inst/doc/V_03_Different_Guidance_Functioning.html | 42 - inst/doc/V_04_Error_Correction.html | 18 inst/doc/V_05_Test_New_Raters.html | 4 inst/doc/iotarelr.html | 10 man/figures/logo.png |only tests/testthat/test_basic_funct.R | 333 ---------- tests/testthat/test_consequences.R |only tests/testthat/test_fast_and_slow_computation.R |only tests/testthat/test_input.R |only tests/testthat/test_plots.R |only 18 files changed, 85 insertions(+), 394 deletions(-)
Title: Area-Proportional Euler and Venn Diagrams with Ellipses
Description: Generate area-proportional Euler diagrams
using numerical optimization. An Euler diagram is a generalization of a Venn
diagram, relaxing the criterion that all interactions need to be
represented. Diagrams may be fit with ellipses and circles via
a wide range of inputs and can be visualized in numerous ways.
Author: Johan Larsson [aut, cre] ,
A. Jonathan R. Godfrey [ctb],
Peter Gustafsson [ctb],
David H. Eberly [ctb] ,
Emanuel Huber [ctb] ,
Florian Prive [ctb]
Maintainer: Johan Larsson <johanlarsson@outlook.com>
Diff between eulerr versions 7.0.4 dated 2025-09-24 and 7.1.0 dated 2026-04-21
eulerr-7.0.4/eulerr/man/print.venn.Rd |only eulerr-7.1.0/eulerr/DESCRIPTION | 8 eulerr-7.1.0/eulerr/MD5 | 70 - eulerr-7.1.0/eulerr/NAMESPACE | 2 eulerr-7.1.0/eulerr/NEWS.md | 18 eulerr-7.1.0/eulerr/R/data.R | 2 eulerr-7.1.0/eulerr/R/eulerr_options.R | 19 eulerr-7.1.0/eulerr/R/fit_diagram.R | 2 eulerr-7.1.0/eulerr/R/plot.euler.R | 565 ++++++++++++++- eulerr-7.1.0/eulerr/R/print.euler.R | 14 eulerr-7.1.0/eulerr/R/setup_geometry.R | 91 +- eulerr-7.1.0/eulerr/R/setup_grobs.R | 314 +++++++- eulerr-7.1.0/eulerr/R/tag-grobs.R | 6 eulerr-7.1.0/eulerr/R/venn.R | 6 eulerr-7.1.0/eulerr/README.md | 31 eulerr-7.1.0/eulerr/build/partial.rdb |binary eulerr-7.1.0/eulerr/build/vignette.rds |binary eulerr-7.1.0/eulerr/inst/doc/gallery.R | 248 ++++-- eulerr-7.1.0/eulerr/inst/doc/gallery.Rmd | 240 ++++-- eulerr-7.1.0/eulerr/inst/doc/gallery.html | 252 ++++-- eulerr-7.1.0/eulerr/inst/doc/introduction.html | 11 eulerr-7.1.0/eulerr/inst/doc/loss-functions.html | 3 eulerr-7.1.0/eulerr/inst/doc/under-the-hood.html | 39 - eulerr-7.1.0/eulerr/inst/doc/venn-diagrams.html | 6 eulerr-7.1.0/eulerr/inst/doc/visualization.html | 24 eulerr-7.1.0/eulerr/man/eulerr_options.Rd | 3 eulerr-7.1.0/eulerr/man/figures/README-plot_method-1.png |binary eulerr-7.1.0/eulerr/man/plants.Rd | 2 eulerr-7.1.0/eulerr/man/plot.euler.Rd | 37 eulerr-7.1.0/eulerr/man/print.eulerr_venn.Rd |only eulerr-7.1.0/eulerr/man/setup_grobs.Rd | 4 eulerr-7.1.0/eulerr/man/venn.Rd | 4 eulerr-7.1.0/eulerr/tests/testthat/test-inputs.R | 1 eulerr-7.1.0/eulerr/tests/testthat/test-plotting.R | 274 +++++++ eulerr-7.1.0/eulerr/tests/testthat/test-printing.R | 1 eulerr-7.1.0/eulerr/vignettes/eulerr.bib | 352 ++++----- eulerr-7.1.0/eulerr/vignettes/gallery.Rmd | 240 ++++-- 37 files changed, 2231 insertions(+), 658 deletions(-)
Title: Mutational Signatures from COSMIC (Catalogue of Somatic
Mutations in Cancer)
Description: A data package with 2 main package variables: 'signature' and 'etiology'.
The 'signature' variable contains the latest mutational signature profiles
released on COSMIC <https://cancer.sanger.ac.uk/signatures/> for 3 mutation
types:
* Single base substitutions in the context of preceding and following bases,
* Doublet base substitutions, and
* Small insertions and deletions.
'cosmicsig' stands for COSMIC signatures. Please run ?'cosmicsig' for more
information.
Author: Steven Rozen [aut, cre] ,
Nanhai Jiang [aut]
Maintainer: Steven Rozen <steverozen@pm.me>
Diff between cosmicsig versions 1.1.1 dated 2023-08-30 and 1.3.1 dated 2026-04-21
DESCRIPTION | 16 +- MD5 | 72 +++++++------ NAMESPACE | 12 +- NEWS.md | 150 +++++++++++++++------------- R/COSMIC_v3.0.R | 34 +++--- R/COSMIC_v3.1.R | 32 ++--- R/COSMIC_v3.2.R | 56 +++++----- R/COSMIC_v3.4.R |only R/COSMIC_v3.5.R |only R/cosmicsig.R | 7 - R/etiology.R | 11 +- R/get_etiology.R | 6 - R/possible_artifacts.R | 35 +++--- R/rare_signatures.R | 22 ++-- R/signature.R | 6 - README.md | 85 +++++++-------- build/partial.rdb |binary data/COSMIC_v3.4.rda |only data/COSMIC_v3.5.rda |only data/etiology.rda |binary data/signature.rda |binary inst/CITATION | 18 +-- inst/WORDLIST | 58 +++++----- inst/scripts |only man/COSMIC_v3.0.Rd | 66 ++++++------ man/COSMIC_v3.1.Rd | 64 +++++------ man/COSMIC_v3.2.Rd | 88 ++++++++-------- man/COSMIC_v3.3.Rd | 4 man/COSMIC_v3.4.Rd |only man/COSMIC_v3.5.Rd |only man/SBS96_ID_to_SBS192_ID.Rd | 50 ++++----- man/cosmicsig.Rd | 131 ++++++++++++------------ man/etiology.Rd | 81 ++++++++------- man/get_etiology.Rd | 78 +++++++------- man/possible_artifacts.Rd | 36 +++--- man/rare_signatures.Rd | 34 +++--- man/signature.Rd | 98 +++++++++--------- tests/testthat.R | 8 - tests/testthat/test_SBS96_ID_to_SBS192_ID.R | 10 - tests/testthat/test_get_etiology.R | 22 ++-- 40 files changed, 723 insertions(+), 667 deletions(-)
Title: Cohort Data Analyses
Description: Functions to make lifetables and to calculate hazard function estimate using Poisson regression model with splines. Includes function to draw simple flowchart of cohort study. Function boxesLx() makes boxes of transition rates between states. It utilizes 'Epi' package 'Lexis' data.
Author: Jari Haukka [aut, cre]
Maintainer: Jari Haukka <jari.haukka@helsinki.fi>
Diff between cohorttools versions 0.1.7 dated 2025-10-18 and 0.1.8 dated 2026-04-21
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- NEWS.md | 4 ++-- R/cohorttools.R | 12 ++++++++---- 4 files changed, 17 insertions(+), 13 deletions(-)
Title: Multiple Bias Analysis in Causal Inference
Description: Quantify exposure-outcome causal effects
with adjustment for multiple biases. The functions can
simultaneously adjust for any combination of uncontrolled confounding,
exposure/outcome misclassification, and selection bias.
The underlying method generalizes the combination of inverse
probability of selection weighting with predictive value weighting.
Simultaneous multi-bias analysis can be used to enhance the validity
and transparency of real-world evidence obtained from observational,
longitudinal studies. Based on the work from Paul Brendel, Aracelis Torres, and Onyebuchi Arah (2023) <doi:10.1093/ije/dyad001>.
Author: Paul Brendel [aut, cre, cph]
Maintainer: Paul Brendel <pcbrendel@gmail.com>
Diff between multibias versions 1.7.2 dated 2025-06-15 and 1.7.3 dated 2026-04-20
DESCRIPTION | 17 +++---- MD5 | 49 ++++++++++----------- NEWS.md | 3 + R/adjust_em.R | 17 +++---- R/adjust_em_om.R | 66 +++++++++++++--------------- R/adjust_em_sel.R | 38 +++++++--------- R/adjust_om.R | 17 +++---- R/adjust_om_sel.R | 38 +++++++--------- R/adjust_uc.R | 17 +++---- R/adjust_uc_em.R | 54 ++++++++++------------- R/adjust_uc_em_sel.R | 88 +++++++++++++++++--------------------- R/adjust_uc_om.R | 54 ++++++++++------------- R/adjust_uc_om_sel.R | 88 ++++++++++++++++++-------------------- R/adjust_uc_sel.R | 17 +++---- R/causal_data.R | 6 +- R/multibias_plot.R | 14 ++++-- README.md | 26 ++--------- inst/doc/faq.html | 8 +-- inst/doc/multibias.html | 2 inst/doc/nhanes_example.Rmd | 2 inst/doc/nhanes_example.html | 4 - man/data_observed.Rd | 6 +- man/figures/bias_combos_table.png |only man/multibias-package.Rd | 2 tests/testthat/test-adjust_uc.R | 16 +++--- vignettes/nhanes_example.Rmd | 2 26 files changed, 307 insertions(+), 344 deletions(-)
Title: Multivariate Functional Spatial Data
Description: Analysis of multivariate functional spatial data,
including spectral multivariate functional principal
component analysis and related statistical procedures
(Si-Ahmed, Idris, et al. "Principal component analysis of multivariate spatial functional data." Big Data Research 39 (2025) 100504).
(Kuenzer, T., Hörmann, S., & Kokoszka, P. (2021). "Principal component analysis of spatially indexed functions." Journal of the American Statistical Association, 116(535), 1444-1456.)
(Happ, C., & Greven, S. (2018). "Multivariate functional principal component analysis for data observed on different (dimensional) domains." Journal of the American Statistical Association, 113(522), 649-659.)
Author: SI-AHMED IDRIS [aut, cre],
Thomas Kuenzer [ctb] ,
Judith AGONKOUI Christelle [ctb],
HAMDAD Leila [ctb],
DABO-NIANG Sophie [ctb]
Maintainer: SI-AHMED IDRIS <i_siahmed@esi.dz>
Diff between MFSD versions 0.1.0 dated 2026-03-31 and 0.1.1 dated 2026-04-20
DESCRIPTION | 24 ++++++++++++++++++------ MD5 | 2 +- 2 files changed, 19 insertions(+), 7 deletions(-)
Title: Automatic Processing of Terrestrial-Based Technologies Point
Cloud Data for Forestry Purposes
Description: Process automation of point cloud data derived from terrestrial-based technologies such as Terrestrial Laser Scanner (TLS) or Mobile Laser Scanner. 'FORTLS' enables (i) detection of trees and estimation of tree-level attributes (e.g. diameters and heights), (ii) estimation of stand-level variables (e.g. density, basal area, mean and dominant height), (iii) computation of metrics related to important forest attributes estimated in Forest Inventories at stand-level, and (iv) optimization of plot design for combining TLS data and field measured data. Documentation about 'FORTLS' is described in Molina-Valero et al. (2022, <doi:10.1016/j.envsoft.2022.105337>).
Author: Juan Alberto Molina-Valero [aut, cph, cre],
Adela Martinez-Calvo [aut, com],
Juan Gabriel Alvarez-Gonzalez [aut, ths],
Fernando Montes [aut],
Cesar Perez-Cruzado [aut, ths]
Maintainer: Juan Alberto Molina-Valero <jamolinavalero@gmail.com>
Diff between FORTLS versions 2.0.0 dated 2026-04-10 and 2.0.1 dated 2026-04-20
DESCRIPTION | 10 +-- MD5 | 24 ++++----- R/auxiliary.functions.R | 9 +-- R/metrics.variables.R | 2 R/section.functions.R | 6 +- R/tree.detection.multi.scan.R | 85 +++++++++++++-------------------- R/tree.detection.single.scan.R | 81 +++++++++---------------------- README.md | 57 +++++++++++----------- build/partial.rdb |binary build/vignette.rds |binary inst/doc/plot_design_optimization.html | 6 +- inst/doc/tree_level.html | 4 - man/metrics.variables.Rd | 2 13 files changed, 119 insertions(+), 167 deletions(-)
Title: Detailed Development of Ecological Niche Models
Description: A new set of tools to help with the development of detailed ecological
niche models using multiple algorithms. Pre-modeling analyses and
explorations can be done to prepare data. Model calibration (model selection)
can be done by creating and testing models with several parameter combinations.
Handy options for producing final models with transfers are included. Other tools to
assess extrapolation risks and variability in model transfers are also
available. Methodological and theoretical basis for the methods implemented
here can be found in:
Peterson et al. (2011) <https://www.degruyter.com/princetonup/view/title/506966>,
Radosavljevic and Anderson (2014) <doi:10.1111/jbi.12227>,
Peterson et al. (2018) <doi:10.1111/nyas.13873>,
Cobos et al. (2019) <doi:10.7717/peerj.6281>,
Alkishe et al. (2020) <doi:10.1016/j.pecon.2020.03.002>,
Machado-Stredel et al. (2021) <doi:10.21425/F5FBG48814>,
Arias-Giraldo and Cobos (2024) <doi:10.17161/bi.v18i.21742> [...truncated...]
Author: Weverton C. F. Trindade [aut, cre] ,
Luis F. Arias-Giraldo [aut] ,
Luis Osorio-Olvera [aut] ,
A. Townsend Peterson [aut] ,
Marlon E. Cobos [aut]
Maintainer: Weverton C. F. Trindade <wevertonf1993@gmail.com>
Diff between kuenm2 versions 0.1.2 dated 2026-03-29 and 0.1.3 dated 2026-04-20
DESCRIPTION | 8 MD5 | 60 +-- NEWS.md | 6 R/bivariate_response.R | 8 R/projection_changes.R | 22 - R/response_curves.R | 12 README.md | 5 inst/doc/basic_data_cleaning.Rmd | 2 inst/doc/basic_data_cleaning.html | 4 inst/doc/model_calibration.Rmd | 2 inst/doc/model_calibration.html | 18 - inst/doc/model_exploration.Rmd | 2 inst/doc/model_exploration.html | 455 ++++++++++++++---------------- inst/doc/model_predictions.Rmd | 2 inst/doc/model_predictions.html | 6 inst/doc/model_projections.Rmd | 2 inst/doc/model_projections.html | 12 inst/doc/prepare_data.Rmd | 2 inst/doc/prepare_data.html | 6 inst/doc/projections_chelsa.Rmd | 2 inst/doc/projections_chelsa.html | 8 inst/doc/variability_and_uncertainty.Rmd | 2 inst/doc/variability_and_uncertainty.html | 52 +-- vignettes/basic_data_cleaning.Rmd | 2 vignettes/model_calibration.Rmd | 2 vignettes/model_exploration.Rmd | 2 vignettes/model_predictions.Rmd | 2 vignettes/model_projections.Rmd | 2 vignettes/prepare_data.Rmd | 2 vignettes/projections_chelsa.Rmd | 2 vignettes/variability_and_uncertainty.Rmd | 2 31 files changed, 355 insertions(+), 359 deletions(-)
Title: Generalised Linear Step-Up Procedure for Multiple Hypothesis
Testing
Description: Performs the Generalised Linear Step-up Procedure (GLSUP) with a flexible user-defined sizing function. Functions are also available for creating common sizing functions.
Author: Toby Kenney [aut, cre]
Maintainer: Toby Kenney <tkenney@mathstat.dal.ca>
Diff between GLSUP versions 1.0.0 dated 2026-04-15 and 1.0.1 dated 2026-04-20
DESCRIPTION | 6 +++--- MD5 | 6 +++--- man/GLSUP.Rd | 11 ++++++++++- man/Sizing_functions.Rd | 45 +++++++++++++++++++++++++++------------------ 4 files changed, 43 insertions(+), 25 deletions(-)
Title: Assessment Tools for Regression Models with Discrete and
Semicontinuous Outcomes
Description: Provides assessment tools for regression models with discrete and semicontinuous outcomes proposed in Yang (2021) <doi:10.1080/10618600.2021.1910042>, Yang (2024) <doi:10.1080/10618600.2024.2303336>, Yang (2024) <doi:10.1093/biomtc/ujae007>, and Yang (2026) <doi:10.1002/cjs.70046>. It calculates the double probability integral transform (DPIT) residuals. It also constructs QQ plots of residuals the ordered curve for assessing mean structures, quasi-empirical distribution function for overall assessment, and a formal goodness-of-fit test.
Author: Lu Yang [aut],
Jeonghwan Lee [cre, aut]
Maintainer: Jeonghwan Lee <lee03938@umn.edu>
Diff between assessor versions 1.3.0 dated 2026-03-22 and 1.3.1 dated 2026-04-20
DESCRIPTION | 11 ++--- MD5 | 8 ++-- R/dpit_glm.R | 104 ++++++++++++++++++++++++++++++++++++++++++++----------- R/dpit_ordinal.R | 2 - R/dpit_tobit.R | 30 +++++++++------ 5 files changed, 113 insertions(+), 42 deletions(-)
Title: Canadian Hydrological Analyses
Description: A collection of user-submitted functions to aid in the analysis of hydrological data, particularly for users in Canada. The functions focus on the use of Canadian data sets, and are suited to Canadian hydrology, such as the important cold region hydrological processes and will work with Canadian hydrological models. The functions are grouped into several themes, currently including Statistical hydrology, Basic data manipulations, Visualization, and Spatial hydrology. Functions developed by the Floodnet project are also included. CSHShydRology has been developed with the assistance of the Canadian Society for Hydrological Sciences (CSHS) which is an affiliated society of the Canadian Water Resources Association (CWRA). As of version 1.2.6, functions now fail gracefully when attempting to download data from a url which is unavailable.
Author: Kevin Shook [cre, aut],
Paul Whitfield [aut],
Robert Chlumsky [aut],
Daniel Moore [aut],
Martin Durocher [aut],
Matthew Lemieux [ctb],
Jason Chiang [ctb],
Joel Trubilowicz [ctb],
SJ Kim [ctb],
Billy Browning [aut]
Maintainer: Kevin Shook <kshook@kshook.ca>
Diff between CSHShydRology versions 1.4.6 dated 2026-02-04 and 1.5.0 dated 2026-04-20
DESCRIPTION | 21 ++++++------ MD5 | 66 +++++++++++++++++++------------------- NAMESPACE | 29 +++++----------- NEWS.md | 5 ++ R/ch_catchment_hyps.R | 40 ++++++++++------------- R/ch_checkcatchment.R | 58 ++++++++++++++++----------------- R/ch_checkchannels.R | 40 ++++++++++------------- R/ch_contours.R | 25 ++++++-------- R/ch_get_url_data.R | 48 ++++++++++++++------------- R/ch_volcano_pourpoints.R | 23 +++++-------- R/ch_volcano_raster.R | 17 ++++----- R/ch_wbt_catchment.R | 40 ++++++++++++++--------- R/ch_wbt_catchment_onestep.R | 55 ++++++++++++++++++++----------- R/ch_wbt_channels.R | 30 ++++++++++------- R/ch_wbt_flow_accumulation.R | 12 +++--- R/ch_wbt_flow_direction.R | 10 ++--- R/ch_wbt_pourpoints.R | 37 +++++++++++++-------- R/ch_wbt_removesinks.R | 60 ++++++++++++++++++++++------------ inst/doc/ch_model_hydrograph.html | 14 ++++---- man/CSHShydRology-package.Rd | 1 man/ch_catchment_hyps.Rd | 20 +++++------ man/ch_checkcatchment.Rd | 19 +++++----- man/ch_checkchannels.Rd | 16 ++++----- man/ch_contours.Rd | 10 ++--- man/ch_get_url_data.Rd | 30 +++++++++-------- man/ch_volcano_pourpoints.Rd | 6 +-- man/ch_volcano_raster.Rd | 8 ++-- man/ch_wbt_catchment.Rd | 10 ++--- man/ch_wbt_catchment_onestep.Rd | 13 ++++--- man/ch_wbt_channels.Rd | 8 ++-- man/ch_wbt_flow_accumulation.Rd | 8 ++-- man/ch_wbt_flow_direction.Rd | 6 +-- man/ch_wbt_pourpoints.Rd | 12 +++--- man/ch_wbt_removesinks.Rd | 10 +++-- 34 files changed, 434 insertions(+), 373 deletions(-)
Title: Laboratory Blind Spike Sample Analyses
Description: A blind spike program provides samples to a laboratory in order to perform quality control (QC) checks. The samples provided are of a known quantity to the tester. The laboratory is typically uninformed of that the sample provided is a QC sample.
Author: Mark Hogue [aut, cre]
Maintainer: Mark Hogue <mark.hogue.chp@gmail.com>
Diff between blindspiker versions 0.2.0 dated 2026-02-02 and 0.2.1 dated 2026-04-20
blindspiker-0.2.0/blindspiker/inst/extdata |only blindspiker-0.2.1/blindspiker/DESCRIPTION | 7 blindspiker-0.2.1/blindspiker/MD5 | 40 +- blindspiker-0.2.1/blindspiker/NEWS.md | 1 blindspiker-0.2.1/blindspiker/R/bs_prep_and_analysis.R | 224 ++++++-------- blindspiker-0.2.1/blindspiker/R/labvals.R |only blindspiker-0.2.1/blindspiker/R/plot_qq.R | 4 blindspiker-0.2.1/blindspiker/R/plot_run.R | 4 blindspiker-0.2.1/blindspiker/R/plot_tat.R | 4 blindspiker-0.2.1/blindspiker/R/spike_combos.R | 4 blindspiker-0.2.1/blindspiker/R/spikevals.R |only blindspiker-0.2.1/blindspiker/R/table_false.R | 4 blindspiker-0.2.1/blindspiker/R/table_spike.R | 4 blindspiker-0.2.1/blindspiker/data |only blindspiker-0.2.1/blindspiker/man/bs_prep_and_analysis.Rd | 4 blindspiker-0.2.1/blindspiker/man/labvals.Rd |only blindspiker-0.2.1/blindspiker/man/plot_qq.Rd | 4 blindspiker-0.2.1/blindspiker/man/plot_run.Rd | 4 blindspiker-0.2.1/blindspiker/man/plot_tat.Rd | 4 blindspiker-0.2.1/blindspiker/man/spike_combos.Rd | 4 blindspiker-0.2.1/blindspiker/man/spikevals.Rd |only blindspiker-0.2.1/blindspiker/man/table_false.Rd | 4 blindspiker-0.2.1/blindspiker/man/table_spike.Rd | 4 23 files changed, 144 insertions(+), 180 deletions(-)
Title: Interface to the World Inequality Database (WID)
Description: Interface to the World Inequality Database (WID) API <https://wid.world>. Downloads distributional national accounts data with filters for country, year, percentile, age group, and population type. Includes code validation and reference tables. Independent implementation unaffiliated with the World Inequality Lab (WIL) or the Paris School of Economics.
Author: Cheryl Isabella Lim [aut, cre]
Maintainer: Cheryl Isabella Lim <cheryl.academic@gmail.com>
Diff between widr versions 0.1.0 dated 2026-03-16 and 0.1.1 dated 2026-04-20
DESCRIPTION | 6 MD5 | 14 NEWS.md | 3 build/vignette.rds |binary inst/doc/code-dictionary.R | 214 inst/doc/code-dictionary.Rmd | 2085 ++++++++- inst/doc/code-dictionary.html | 9176 +++++++++++++++++++++++++++++++++++++----- vignettes/code-dictionary.Rmd | 2085 ++++++++- 8 files changed, 12167 insertions(+), 1416 deletions(-)
Title: Robust Linear Mixed Effects Models
Description: Implements the Robust Scoring Equations estimator to fit linear
mixed effects models robustly.
Robustness is achieved by modification of the scoring equations
combined with the Design Adaptive Scale approach.
Author: Manuel Koller [aut, cre]
Maintainer: Manuel Koller <kollerma@proton.me>
Diff between robustlmm versions 3.4-2 dated 2026-01-28 and 3.4-3 dated 2026-04-20
DESCRIPTION | 10 +++++----- MD5 | 16 ++++++++-------- R/lmer.R | 38 ++++++++++++++++---------------------- R/rlmer.R | 6 +----- README.md | 2 +- inst/doc/rlmer.pdf |binary inst/doc/simulationStudies.pdf |binary src/PsiFunction.cpp | 6 ++++-- src/misc.h | 2 +- 9 files changed, 36 insertions(+), 44 deletions(-)
Title: Similarity Retrieval and Local Learning for Spectral
Chemometrics
Description: Functions for dissimilarity analysis and machine learning in complex
spectral data sets, including memory-based learning (MBL), optimal subset
search and selection, and retrieval-based modelling with model libraries.
Supports local learning, optimisation of spectral libraries, and
ensemble prediction from precomputed models.
Most of these functions are based on the methods presented in
Ramirez-Lopez et al. (2013) <doi:10.1016/j.geoderma.2012.12.014>.
Author: Leonardo Ramirez-Lopez [aut, cre] ,
Antoine Stevens [aut, ctb] ,
Claudio Orellano [ctb]
Maintainer: Leonardo Ramirez-Lopez <ramirez.lopez.leo@gmail.com>
Diff between resemble versions 2.2.5 dated 2025-10-17 and 3.0.0 dated 2026-04-20
resemble-2.2.5/resemble/R/get_predictions.R |only resemble-2.2.5/resemble/R/local_fit.R |only resemble-2.2.5/resemble/R/plot.mbl.R |only resemble-2.2.5/resemble/R/plot.ortho_projection.R |only resemble-2.2.5/resemble/R/print.local_fit.R |only resemble-2.2.5/resemble/R/print.mbl.R |only resemble-2.2.5/resemble/R/sim_eval.R |only resemble-2.2.5/resemble/inst/doc/resemble.R |only resemble-2.2.5/resemble/inst/doc/resemble.Rmd |only resemble-2.2.5/resemble/inst/doc/resemble.html |only resemble-2.2.5/resemble/man/check_pc_arguments.Rd |only resemble-2.2.5/resemble/man/cor_diss.Rd |only resemble-2.2.5/resemble/man/diss_to_neighbors.Rd |only resemble-2.2.5/resemble/man/euclid_to_mahal.Rd |only resemble-2.2.5/resemble/man/eval_multi_pc_diss.Rd |only resemble-2.2.5/resemble/man/f_diss.Rd |only resemble-2.2.5/resemble/man/fast_diss.Rd |only resemble-2.2.5/resemble/man/fast_diss_vector.Rd |only resemble-2.2.5/resemble/man/fit_and_predict.Rd |only resemble-2.2.5/resemble/man/format_xr_xu_indices.Rd |only resemble-2.2.5/resemble/man/gaussian_pr_cv.Rd |only resemble-2.2.5/resemble/man/gaussian_process.Rd |only resemble-2.2.5/resemble/man/gaussian_process_cv.Rd |only resemble-2.2.5/resemble/man/get_col_largest_sd.Rd |only resemble-2.2.5/resemble/man/get_col_sds.Rd |only resemble-2.2.5/resemble/man/get_column_means.Rd |only resemble-2.2.5/resemble/man/get_column_sds.Rd |only resemble-2.2.5/resemble/man/get_column_sums.Rd |only resemble-2.2.5/resemble/man/get_eval_categorical.Rd |only resemble-2.2.5/resemble/man/get_eval_continuous.Rd |only resemble-2.2.5/resemble/man/get_ith_local_neighbors.Rd |only resemble-2.2.5/resemble/man/get_local_pls_weights.Rd |only resemble-2.2.5/resemble/man/get_neighbor_info.Rd |only resemble-2.2.5/resemble/man/get_predictions.Rd |only resemble-2.2.5/resemble/man/get_sample_strata.Rd |only resemble-2.2.5/resemble/man/get_samples_from_strata.Rd |only resemble-2.2.5/resemble/man/get_wapls_weights.Rd |only resemble-2.2.5/resemble/man/get_weights.Rd |only resemble-2.2.5/resemble/man/ith_mbl_neighbor.Rd |only resemble-2.2.5/resemble/man/ith_subsets_ortho_diss.Rd |only resemble-2.2.5/resemble/man/local_fit.Rd |only resemble-2.2.5/resemble/man/local_ortho_diss.Rd |only resemble-2.2.5/resemble/man/moving_cor_diss.Rd |only resemble-2.2.5/resemble/man/opls.Rd |only resemble-2.2.5/resemble/man/opls_cv_cpp.Rd |only resemble-2.2.5/resemble/man/opls_for_projection.Rd |only resemble-2.2.5/resemble/man/opls_get_all.Rd |only resemble-2.2.5/resemble/man/opls_get_basics.Rd |only resemble-2.2.5/resemble/man/opls_gs.Rd |only resemble-2.2.5/resemble/man/optim_sample_strata.Rd |only resemble-2.2.5/resemble/man/ortho_diss.Rd |only resemble-2.2.5/resemble/man/overall_var.Rd |only resemble-2.2.5/resemble/man/pca_nipals.Rd |only resemble-2.2.5/resemble/man/plot.mbl.Rd |only resemble-2.2.5/resemble/man/plot.ortho_projection.Rd |only resemble-2.2.5/resemble/man/pls_cv.Rd |only resemble-2.2.5/resemble/man/predict_gaussian_process.Rd |only resemble-2.2.5/resemble/man/predict_opls.Rd |only resemble-2.2.5/resemble/man/print.local_fit.Rd |only resemble-2.2.5/resemble/man/print.local_ortho_diss.Rd |only resemble-2.2.5/resemble/man/print.mbl.Rd |only resemble-2.2.5/resemble/man/project_opls.Rd |only resemble-2.2.5/resemble/man/reconstruction_error.Rd |only resemble-2.2.5/resemble/man/sample_stratified.Rd |only resemble-2.2.5/resemble/man/sim_eval.Rd |only resemble-2.2.5/resemble/man/sqrt_sm.Rd |only resemble-2.2.5/resemble/man/sub-.local_ortho_diss.Rd |only resemble-2.2.5/resemble/man/which_min.Rd |only resemble-2.2.5/resemble/man/which_min_vector.Rd |only resemble-2.2.5/resemble/vignettes/logo.jpg |only resemble-2.2.5/resemble/vignettes/resemble.Rmd |only resemble-3.0.0/resemble/DESCRIPTION | 54 resemble-3.0.0/resemble/LICENSE | 4 resemble-3.0.0/resemble/MD5 | 248 resemble-3.0.0/resemble/NAMESPACE | 82 resemble-3.0.0/resemble/NEWS.md | 54 resemble-3.0.0/resemble/R/AAA.R | 28 resemble-3.0.0/resemble/R/RcppExports.R | 706 ++ resemble-3.0.0/resemble/R/cor_diss.R | 95 resemble-3.0.0/resemble/R/diss_correlation.R |only resemble-3.0.0/resemble/R/diss_evaluate.R |only resemble-3.0.0/resemble/R/diss_helpers.R |only resemble-3.0.0/resemble/R/diss_methods.R |only resemble-3.0.0/resemble/R/diss_projection.R |only resemble-3.0.0/resemble/R/dissimilarity.R | 752 +- resemble-3.0.0/resemble/R/f_diss.R | 10 resemble-3.0.0/resemble/R/fit_methods.R |only resemble-3.0.0/resemble/R/gesearch.R |only resemble-3.0.0/resemble/R/gesearch_control.R |only resemble-3.0.0/resemble/R/gesearch_helpers.R |only resemble-3.0.0/resemble/R/liblex.R |only resemble-3.0.0/resemble/R/liblex_control.R |only resemble-3.0.0/resemble/R/liblex_helpers.R |only resemble-3.0.0/resemble/R/local_helpers.R | 1064 ++-- resemble-3.0.0/resemble/R/mbl.R | 2510 +++++----- resemble-3.0.0/resemble/R/mbl_control.R | 310 - resemble-3.0.0/resemble/R/model.R |only resemble-3.0.0/resemble/R/model_control.R |only resemble-3.0.0/resemble/R/ncomp_by_methods.R |only resemble-3.0.0/resemble/R/neighbors_methods.R |only resemble-3.0.0/resemble/R/ortho_diss.R | 998 +-- resemble-3.0.0/resemble/R/ortho_diss_helpers.R | 269 - resemble-3.0.0/resemble/R/ortho_projection.R | 1398 ++--- resemble-3.0.0/resemble/R/ortho_projection_helpers.R | 105 resemble-3.0.0/resemble/R/print.local_ortho_diss.R | 104 resemble-3.0.0/resemble/R/print.ortho_projection.R | 3 resemble-3.0.0/resemble/R/prints.R |only resemble-3.0.0/resemble/R/resemble.R | 92 resemble-3.0.0/resemble/R/sample_stratified.R | 38 resemble-3.0.0/resemble/R/search_neighbors.R | 746 +- resemble-3.0.0/resemble/R/search_neighbors_helpers.R | 46 resemble-3.0.0/resemble/R/zzz.R |only resemble-3.0.0/resemble/README.md | 716 +- resemble-3.0.0/resemble/build/stage23.rdb |binary resemble-3.0.0/resemble/build/vignette.rds |binary resemble-3.0.0/resemble/cleanup |only resemble-3.0.0/resemble/cleanup.win |only resemble-3.0.0/resemble/configure |only resemble-3.0.0/resemble/configure.win |only resemble-3.0.0/resemble/inst/CITATION | 13 resemble-3.0.0/resemble/inst/changes.md | 18 resemble-3.0.0/resemble/inst/doc/building-a-library-of-models-with-liblex.R |only resemble-3.0.0/resemble/inst/doc/building-a-library-of-models-with-liblex.html |only resemble-3.0.0/resemble/inst/doc/building-a-library-of-models-with-liblex.qmd |only resemble-3.0.0/resemble/inst/doc/classical-mbl.R |only resemble-3.0.0/resemble/inst/doc/classical-mbl.html |only resemble-3.0.0/resemble/inst/doc/classical-mbl.qmd |only resemble-3.0.0/resemble/inst/doc/dimensionality-reduction.R |only resemble-3.0.0/resemble/inst/doc/dimensionality-reduction.html |only resemble-3.0.0/resemble/inst/doc/dimensionality-reduction.qmd |only resemble-3.0.0/resemble/inst/doc/estimating-dissimilarity-between-spectra.R |only resemble-3.0.0/resemble/inst/doc/estimating-dissimilarity-between-spectra.html |only resemble-3.0.0/resemble/inst/doc/estimating-dissimilarity-between-spectra.qmd |only resemble-3.0.0/resemble/inst/doc/evolutionary-subset-search.R |only resemble-3.0.0/resemble/inst/doc/evolutionary-subset-search.html |only resemble-3.0.0/resemble/inst/doc/evolutionary-subset-search.qmd |only resemble-3.0.0/resemble/inst/doc/intro.R |only resemble-3.0.0/resemble/inst/doc/intro.html |only resemble-3.0.0/resemble/inst/doc/intro.qmd |only resemble-3.0.0/resemble/inst/doc/nearest-neighbor-search.R |only resemble-3.0.0/resemble/inst/doc/nearest-neighbor-search.html |only resemble-3.0.0/resemble/inst/doc/nearest-neighbor-search.qmd |only resemble-3.0.0/resemble/inst/doc/simple-global-models.R |only resemble-3.0.0/resemble/inst/doc/simple-global-models.html |only resemble-3.0.0/resemble/inst/doc/simple-global-models.qmd |only resemble-3.0.0/resemble/inst/logo.R |only resemble-3.0.0/resemble/man/diss_correlation.Rd |only resemble-3.0.0/resemble/man/diss_cosine.Rd |only resemble-3.0.0/resemble/man/diss_euclidean.Rd |only resemble-3.0.0/resemble/man/diss_evaluate.Rd |only resemble-3.0.0/resemble/man/diss_mahalanobis.Rd |only resemble-3.0.0/resemble/man/diss_pca.Rd |only resemble-3.0.0/resemble/man/diss_pls.Rd |only resemble-3.0.0/resemble/man/dissimilarity.Rd | 289 - resemble-3.0.0/resemble/man/figures/logo.png |binary resemble-3.0.0/resemble/man/fit_methods.Rd |only resemble-3.0.0/resemble/man/gesearch.Rd |only resemble-3.0.0/resemble/man/gesearch_control.Rd |only resemble-3.0.0/resemble/man/liblex.Rd |only resemble-3.0.0/resemble/man/liblex_control.Rd |only resemble-3.0.0/resemble/man/mbl.Rd | 738 +- resemble-3.0.0/resemble/man/mbl_control.Rd | 176 resemble-3.0.0/resemble/man/model.Rd |only resemble-3.0.0/resemble/man/model_control.Rd |only resemble-3.0.0/resemble/man/ncomp_selection.Rd |only resemble-3.0.0/resemble/man/neighbors.Rd |only resemble-3.0.0/resemble/man/ortho_projection.Rd | 411 - resemble-3.0.0/resemble/man/resemble-package.Rd | 74 resemble-3.0.0/resemble/man/search_neighbors.Rd | 349 - resemble-3.0.0/resemble/src/Makevars | 21 resemble-3.0.0/resemble/src/Makevars.ucrt |only resemble-3.0.0/resemble/src/Makevars.win | 11 resemble-3.0.0/resemble/src/RcppExports.cpp | 219 resemble-3.0.0/resemble/src/diss_helpers.cpp | 1071 ++++ resemble-3.0.0/resemble/src/regression_methods.cpp | 2405 +++++++-- resemble-3.0.0/resemble/tests/testthat.R | 1 resemble-3.0.0/resemble/tests/testthat/fit-and-k-constructors.R |only resemble-3.0.0/resemble/tests/testthat/test-dissimilarity.R | 1578 +++++- resemble-3.0.0/resemble/tests/testthat/test-euclidean.R |only resemble-3.0.0/resemble/tests/testthat/test-fit-constructors.R |only resemble-3.0.0/resemble/tests/testthat/test-gesearch.R |only resemble-3.0.0/resemble/tests/testthat/test-liblex.R |only resemble-3.0.0/resemble/tests/testthat/test-mbl.R | 1969 ++++++- resemble-3.0.0/resemble/tests/testthat/test-model.R |only resemble-3.0.0/resemble/tests/testthat/test-ncomp_by-constructors.R |only resemble-3.0.0/resemble/tests/testthat/test-neighbor-constructors.R |only resemble-3.0.0/resemble/tests/testthat/test-pc_projection.R | 625 +- resemble-3.0.0/resemble/tests/testthat/test-pls-cpp-consistency.R |only resemble-3.0.0/resemble/tests/testthat/test-pls_projection.R | 629 +- resemble-3.0.0/resemble/tests/testthat/test-print.ortho_projection.R |only resemble-3.0.0/resemble/tests/testthat/test-prints.R |only resemble-3.0.0/resemble/tests/testthat/test-search_neighbors.R | 530 +- resemble-3.0.0/resemble/vignettes/building-a-library-of-models-with-liblex.qmd |only resemble-3.0.0/resemble/vignettes/classical-mbl.qmd |only resemble-3.0.0/resemble/vignettes/dimensionality-reduction.qmd |only resemble-3.0.0/resemble/vignettes/elsevier-harvard.csl |only resemble-3.0.0/resemble/vignettes/estimating-dissimilarity-between-spectra.qmd |only resemble-3.0.0/resemble/vignettes/evolutionary-subset-search.qmd |only resemble-3.0.0/resemble/vignettes/intro.qmd |only resemble-3.0.0/resemble/vignettes/logo.png |only resemble-3.0.0/resemble/vignettes/nearest-neighbor-search.qmd |only resemble-3.0.0/resemble/vignettes/resemble.bib | 120 resemble-3.0.0/resemble/vignettes/simple-global-models.qmd |only 203 files changed, 14043 insertions(+), 7636 deletions(-)
Title: Provides a 'PySpark' Back-End for the 'sparklyr' Package
Description: It enables 'sparklyr' to integrate with 'Spark Connect', and
'Databricks Connect' by providing a wrapper over the 'PySpark'
'python' library.
Author: Edgar Ruiz [aut, cre],
Posit Software, PBC [cph, fnd]
Maintainer: Edgar Ruiz <edgar@posit.co>
Diff between pysparklyr versions 0.2.0 dated 2026-01-26 and 0.2.1 dated 2026-04-20
DESCRIPTION | 13 +- MD5 | 41 ++++--- NAMESPACE | 3 NEWS.md | 23 ++++ R/connect-databricks.R | 31 +++++ R/connect-utils.R | 7 - R/pysparklyr-package.R | 2 R/python-install.R | 3 R/python-to-pandas-cleaned.R | 63 ++++++++++- R/python-use-envname.R | 24 +++- R/spark-session.R |only R/sparklyr-spark-apply.R | 18 ++- R/start-stop-service.R | 87 ++++++++++++++-- R/tune-grid.R |only R/utils.R | 20 +++ man/spark_connect_service_start.Rd | 11 ++ tests/testthat.R | 2 tests/testthat/_snaps/aaa-python-install.md | 7 - tests/testthat/helper-init.R | 2 tests/testthat/helper-ml.R | 99 ++++++++++++++++++ tests/testthat/setup.R | 27 +++-- tests/testthat/test-python-use-envname.R | 150 +++++++++++++++++++++++++++- tests/testthat/test-tune-grid.R |only 23 files changed, 559 insertions(+), 74 deletions(-)
Title: Fit the Meta-D' Model of Confidence Ratings Using 'brms'
Description: Implementation of Bayesian regressions over the meta-d' model of
psychological data from two alternative forced choice tasks with
ordinal confidence ratings. For more information, see
Maniscalco & Lau (2012) <doi:10.1016/j.concog.2011.09.021>.
The package is a front-end to the 'brms' package, which facilitates a wide
range of regression designs, as well as tools for efficiently extracting
posterior estimates, plotting, and significance testing.
Author: Kevin O'Neill [aut, cre, cph] ,
Stephen Fleming [aut, cph]
Maintainer: Kevin O'Neill <kevin.o'neill@ucl.ac.uk>
Diff between hmetad versions 0.1.0 dated 2026-03-16 and 0.1.1 dated 2026-04-20
hmetad-0.1.0/hmetad/vignettes/_categorical.Rmd.src |only hmetad-0.1.1/hmetad/DESCRIPTION | 12 hmetad-0.1.1/hmetad/MD5 | 83 +- hmetad-0.1.1/hmetad/NEWS.md | 17 hmetad-0.1.1/hmetad/R/epred_draws_metad.R | 6 hmetad-0.1.1/hmetad/R/hmetad.R | 313 +++++-- hmetad-0.1.1/hmetad/R/linpred_draws_metad.R | 35 hmetad-0.1.1/hmetad/R/mean_confidence_draws.R | 4 hmetad-0.1.1/hmetad/R/metacognitive_bias_draws.R | 2 hmetad-0.1.1/hmetad/R/metad_family.R | 56 - hmetad-0.1.1/hmetad/R/predicted_draws_metad.R | 6 hmetad-0.1.1/hmetad/R/simulate.R | 5 hmetad-0.1.1/hmetad/README.md | 367 ++++---- hmetad-0.1.1/hmetad/build/partial.rdb |binary hmetad-0.1.1/hmetad/build/vignette.rds |binary hmetad-0.1.1/hmetad/inst/doc/alternative_distributions.R | 2 hmetad-0.1.1/hmetad/inst/doc/alternative_distributions.Rmd | 2 hmetad-0.1.1/hmetad/inst/doc/alternative_distributions.html | 24 hmetad-0.1.1/hmetad/inst/doc/categorical.Rmd | 380 ++++----- hmetad-0.1.1/hmetad/inst/doc/categorical.html | 414 ++++------ hmetad-0.1.1/hmetad/inst/doc/history.Rmd | 2 hmetad-0.1.1/hmetad/inst/doc/history.html | 8 hmetad-0.1.1/hmetad/inst/doc/hmetad.R | 4 hmetad-0.1.1/hmetad/inst/doc/hmetad.Rmd | 12 hmetad-0.1.1/hmetad/inst/doc/hmetad.html | 492 ++++++------ hmetad-0.1.1/hmetad/inst/doc/parameterization.Rmd | 2 hmetad-0.1.1/hmetad/inst/doc/parameterization.html | 2 hmetad-0.1.1/hmetad/man/aggregate_metad.Rd | 25 hmetad-0.1.1/hmetad/man/figures |only hmetad-0.1.1/hmetad/man/fit_metad.Rd | 20 hmetad-0.1.1/hmetad/man/hmetad-package.Rd | 2 hmetad-0.1.1/hmetad/man/metad_pmf.Rd | 2 hmetad-0.1.1/hmetad/man/signed.Rd | 2 hmetad-0.1.1/hmetad/man/stanvars_metad.Rd | 10 hmetad-0.1.1/hmetad/tests/testthat/test-draws.R | 24 hmetad-0.1.1/hmetad/tests/testthat/test-hmetad.R | 47 + hmetad-0.1.1/hmetad/vignettes/alternative_distributions.Rmd | 2 hmetad-0.1.1/hmetad/vignettes/categorical.Rmd | 380 ++++----- hmetad-0.1.1/hmetad/vignettes/citations.bib | 11 hmetad-0.1.1/hmetad/vignettes/history.Rmd | 2 hmetad-0.1.1/hmetad/vignettes/hmetad.Rmd | 12 hmetad-0.1.1/hmetad/vignettes/parameterization.Rmd | 2 hmetad-0.1.1/hmetad/vignettes/precompile.R | 7 hmetad-0.1.1/hmetad/vignettes/src |only 44 files changed, 1468 insertions(+), 1330 deletions(-)
Title: Project GENIE BioPharma Collaborative Data Processing Pipeline
Description: The American Association Research (AACR) Project
Genomics Evidence Neoplasia Information Exchange (GENIE) BioPharma
Collaborative represents a multi-year, multi-institution effort
to build a pan-cancer repository of linked clinico-genomic data.
The genomic and clinical data are provided in multiple releases (separate
releases for each cancer cohort with updates following data corrections),
which are stored on the data sharing platform
'Synapse' <https://www.synapse.org/>.
The 'genieBPC' package provides a seamless way to obtain the
data corresponding to each release from 'Synapse' and to prepare
datasets for analysis.
Author: Jessica A. Lavery [aut, cre] ,
Michael A. Curry [aut] ,
Samantha Brown [aut] ,
Karissa Whiting [aut] ,
Yufei Deng [aut] ,
Hannah Fuchs [ctb] ,
Axel Martin [ctb],
Daniel D. Sjoberg [ctb]
Maintainer: Jessica A. Lavery <laveryj@mskcc.org>
Diff between genieBPC versions 2.0.1 dated 2024-07-11 and 2.2.0 dated 2026-04-20
genieBPC-2.0.1/genieBPC/man/dot-get_token_by_pat.Rd |only genieBPC-2.0.1/genieBPC/man/dot-get_token_by_username.Rd |only genieBPC-2.0.1/genieBPC/tests/testthat/test-create_analytic_cohort.R |only genieBPC-2.2.0/genieBPC/DESCRIPTION | 55 genieBPC-2.2.0/genieBPC/MD5 | 114 genieBPC-2.2.0/genieBPC/NAMESPACE | 3 genieBPC-2.2.0/genieBPC/NEWS.md | 25 genieBPC-2.2.0/genieBPC/R/create_analytic_cohort.R | 488 genieBPC-2.2.0/genieBPC/R/data.R | 18 genieBPC-2.2.0/genieBPC/R/drug_regimen_sunburst.R | 4 genieBPC-2.2.0/genieBPC/R/pull_data_synapse.R | 35 genieBPC-2.2.0/genieBPC/R/synapse_authentication.R | 323 genieBPC-2.2.0/genieBPC/R/synapse_version.R | 10 genieBPC-2.2.0/genieBPC/R/sysdata.rda |only genieBPC-2.2.0/genieBPC/README.md | 82 genieBPC-2.2.0/genieBPC/build/vignette.rds |binary genieBPC-2.2.0/genieBPC/data/cohort_institution.rda |only genieBPC-2.2.0/genieBPC/data/drug_regimen_list.rda |binary genieBPC-2.2.0/genieBPC/data/synapse_tables.rda |binary genieBPC-2.2.0/genieBPC/inst/WORDLIST | 10 genieBPC-2.2.0/genieBPC/inst/doc/clinical_data_structure_vignette.Rmd | 7 genieBPC-2.2.0/genieBPC/inst/doc/clinical_data_structure_vignette.html | 13 genieBPC-2.2.0/genieBPC/inst/doc/create_analytic_cohort_vignette.R | 97 genieBPC-2.2.0/genieBPC/inst/doc/create_analytic_cohort_vignette.Rmd | 21 genieBPC-2.2.0/genieBPC/inst/doc/create_analytic_cohort_vignette.html | 2409 + genieBPC-2.2.0/genieBPC/inst/doc/drug_regimen_sunburst_vignette.R | 66 genieBPC-2.2.0/genieBPC/inst/doc/drug_regimen_sunburst_vignette.Rmd | 8 genieBPC-2.2.0/genieBPC/inst/doc/drug_regimen_sunburst_vignette.html |12181 +++++++++- genieBPC-2.2.0/genieBPC/inst/doc/pull_data_synapse_vignette.R | 52 genieBPC-2.2.0/genieBPC/inst/doc/pull_data_synapse_vignette.Rmd | 67 genieBPC-2.2.0/genieBPC/inst/doc/pull_data_synapse_vignette.html | 693 genieBPC-2.2.0/genieBPC/inst/doc/select_unique_ngs_vignette.R | 79 genieBPC-2.2.0/genieBPC/inst/doc/select_unique_ngs_vignette.Rmd | 6 genieBPC-2.2.0/genieBPC/inst/doc/select_unique_ngs_vignette.html | 625 genieBPC-2.2.0/genieBPC/man/check_genie_access.Rd | 13 genieBPC-2.2.0/genieBPC/man/cohort_institution.Rd |only genieBPC-2.2.0/genieBPC/man/create_analytic_cohort.Rd | 11 genieBPC-2.2.0/genieBPC/man/dot-get_and_query_file_url.Rd | 2 genieBPC-2.2.0/genieBPC/man/dot-get_env.Rd | 2 genieBPC-2.2.0/genieBPC/man/dot-get_synapse_token.Rd | 17 genieBPC-2.2.0/genieBPC/man/dot-is_connected_to_genie.Rd | 7 genieBPC-2.2.0/genieBPC/man/dot-pull_data_by_cohort.Rd | 2 genieBPC-2.2.0/genieBPC/man/dot-resolve_duplicates.Rd | 2 genieBPC-2.2.0/genieBPC/man/dot-verify_pat_works.Rd |only genieBPC-2.2.0/genieBPC/man/drug_regimen_list.Rd | 3 genieBPC-2.2.0/genieBPC/man/drug_regimen_sunburst.Rd | 2 genieBPC-2.2.0/genieBPC/man/genieBPC-package.Rd | 5 genieBPC-2.2.0/genieBPC/man/pull_data_synapse.Rd | 30 genieBPC-2.2.0/genieBPC/man/select_unique_ngs.Rd | 2 genieBPC-2.2.0/genieBPC/man/set_synapse_credentials.Rd | 26 genieBPC-2.2.0/genieBPC/man/synapse_version.Rd | 2 genieBPC-2.2.0/genieBPC/tests/testthat/setup.R |only genieBPC-2.2.0/genieBPC/tests/testthat/test-drug_regimen_sunburst.R | 33 genieBPC-2.2.0/genieBPC/tests/testthat/test-no-access-create_analytic_cohort.R |only genieBPC-2.2.0/genieBPC/tests/testthat/test-pull_data_synapse.R | 336 genieBPC-2.2.0/genieBPC/tests/testthat/test-set_synapse_credentials.R | 14 genieBPC-2.2.0/genieBPC/tests/testthat/test-synapse_tables.R | 11 genieBPC-2.2.0/genieBPC/tests/testthat/test-with-access-create_analytic_cohort.R |only genieBPC-2.2.0/genieBPC/vignettes/clinical_data_structure_vignette.Rmd | 7 genieBPC-2.2.0/genieBPC/vignettes/create_analytic_cohort_vignette.Rmd | 21 genieBPC-2.2.0/genieBPC/vignettes/drug_regimen_sunburst_vignette.Rmd | 8 genieBPC-2.2.0/genieBPC/vignettes/pull_data_synapse_vignette.Rmd | 67 genieBPC-2.2.0/genieBPC/vignettes/select_unique_ngs_vignette.Rmd | 6 63 files changed, 17013 insertions(+), 1107 deletions(-)
Title: ARAchnid KNowledge Online
Description: Allows the user to connect with the World Spider Catalogue (WSC; <https://wsc.nmbe.ch/>) and the World Spider Trait (WST; <https://spidertraits.sci.muni.cz/>) databases. Also performs several basic functions such as checking names validity, retrieving coordinate data from the Global Biodiversity Information Facility (GBIF; <https://www.gbif.org/>), and mapping.
Author: Pedro Cardoso [aut, cre]
Maintainer: Pedro Cardoso <pmcardoso@ciencias.ulisboa.pt>
Diff between arakno versions 1.3.1 dated 2025-07-30 and 1.3.2 dated 2026-04-20
DESCRIPTION | 10 ++-- MD5 | 13 +++-- R/arakno.R | 122 +++++++++++++++++++++++++++++------------------------- data/wscmap.csv |only man/checknames.Rd | 4 - man/taxonomy.Rd | 8 +-- man/traits.Rd | 5 -- man/wsc.Rd | 4 - 8 files changed, 87 insertions(+), 79 deletions(-)
Title: AI Screening Tools in R for Systematic Reviewing
Description: Provides functions to conduct title and abstract screening in systematic reviews using large language models, such as the Generative Pre-trained Transformer (GPT) models from 'OpenAI' <https://developers.openai.com/>. These functions can enhance the quality of title and abstract screenings while reducing the total screening time significantly. In addition, the package includes tools for quality assessment of title and abstract screenings, as described in Vembye, Christensen, Mølgaard, and Schytt (2025) <DOI:10.1037/met0000769>.
Author: Mikkel H. Vembye [aut, cre] ,
Thomas Olsen [aut]
Maintainer: Mikkel H. Vembye <mikkel.vembye@gmail.com>
Diff between AIscreenR versions 0.3.0 dated 2026-04-13 and 0.3.2 dated 2026-04-20
AIscreenR-0.3.0/AIscreenR/inst/figures |only AIscreenR-0.3.2/AIscreenR/DESCRIPTION | 6 AIscreenR-0.3.2/AIscreenR/MD5 | 31 - AIscreenR-0.3.2/AIscreenR/NEWS.md | 93 +++-- AIscreenR-0.3.2/AIscreenR/R/rate_limits.R | 1 AIscreenR-0.3.2/AIscreenR/R/report_errors.r | 170 ++++++++-- AIscreenR-0.3.2/AIscreenR/R/screen_analyzer.R | 11 AIscreenR-0.3.2/AIscreenR/R/tabscreen_gpt.R | 88 ++--- AIscreenR-0.3.2/AIscreenR/build/partial.rdb |binary AIscreenR-0.3.2/AIscreenR/build/vignette.rds |binary AIscreenR-0.3.2/AIscreenR/inst/doc/Using-GPT-API-Models-For-Screening.R | 5 AIscreenR-0.3.2/AIscreenR/inst/doc/Using-GPT-API-Models-For-Screening.html | 106 +++--- AIscreenR-0.3.2/AIscreenR/inst/doc/Using-GPT-API-Models-For-Screening.qmd | 9 AIscreenR-0.3.2/AIscreenR/man/report.Rd | 9 AIscreenR-0.3.2/AIscreenR/man/tabscreen_gpt.tools.Rd | 25 - AIscreenR-0.3.2/AIscreenR/vignettes/Using-GPT-API-Models-For-Screening.qmd | 9 AIscreenR-0.3.2/AIscreenR/vignettes/helper_stuff/Renviron.png |binary 17 files changed, 359 insertions(+), 204 deletions(-)
Title: Orchestration of Data Pipelines
Description: Framework for creating and orchestrating data pipelines. Organize, orchestrate, and monitor multiple pipelines in a single project. Use tags to decorate functions with scheduling parameters and configuration.
Author: Will Hipson [cre, aut, cph] ,
Ryan Garnett [aut, ctb, cph]
Maintainer: Will Hipson <will.e.hipson@gmail.com>
Diff between maestro versions 1.0.1 dated 2026-02-18 and 1.1.0 dated 2026-04-20
maestro-1.0.1/maestro/data |only maestro-1.0.1/maestro/inst/roxygen2-tags.yml |only maestro-1.0.1/maestro/tests/testthat/test-suggest_orch_frequency.R |only maestro-1.1.0/maestro/DESCRIPTION | 7 maestro-1.1.0/maestro/MD5 | 144 - maestro-1.1.0/maestro/NAMESPACE | 1 maestro-1.1.0/maestro/NEWS.md | 39 maestro-1.1.0/maestro/R/MaestroPipeline.R | 296 +- maestro-1.1.0/maestro/R/MaestroSchedule.R | 62 maestro-1.1.0/maestro/R/build_schedule.R | 19 maestro-1.1.0/maestro/R/build_schedule_entry.R | 154 - maestro-1.1.0/maestro/R/get_network.R |only maestro-1.1.0/maestro/R/get_run_sequence.R | 17 maestro-1.1.0/maestro/R/maestro_tags.R | 17 maestro-1.1.0/maestro/R/roxy_maestro.R | 32 maestro-1.1.0/maestro/R/run_schedule.R | 45 maestro-1.1.0/maestro/R/show_network.R | 10 maestro-1.1.0/maestro/R/suggest_orch_frequency.R | 7 maestro-1.1.0/maestro/R/utils.R | 227 + maestro-1.1.0/maestro/README.md | 97 maestro-1.1.0/maestro/build/vignette.rds |binary maestro-1.1.0/maestro/inst/doc/maestro-1-quick-start.R | 8 maestro-1.1.0/maestro/inst/doc/maestro-1-quick-start.Rmd | 10 maestro-1.1.0/maestro/inst/doc/maestro-1-quick-start.html | 26 maestro-1.1.0/maestro/inst/doc/maestro-2-motivation-concepts.R | 4 maestro-1.1.0/maestro/inst/doc/maestro-2-motivation-concepts.html | 235 + maestro-1.1.0/maestro/inst/doc/maestro-2-motivation-concepts.qmd | 237 + maestro-1.1.0/maestro/inst/doc/maestro-3-advanced-scheduling.R | 4 maestro-1.1.0/maestro/inst/doc/maestro-3-advanced-scheduling.html | 20 maestro-1.1.0/maestro/inst/doc/maestro-3-advanced-scheduling.qmd | 6 maestro-1.1.0/maestro/inst/doc/maestro-4-directed-acyclic-graphs.R | 7 maestro-1.1.0/maestro/inst/doc/maestro-4-directed-acyclic-graphs.Rmd | 10 maestro-1.1.0/maestro/inst/doc/maestro-4-directed-acyclic-graphs.html | 1263 ---------- maestro-1.1.0/maestro/inst/doc/maestro-5-logging.html | 59 maestro-1.1.0/maestro/inst/doc/maestro-6-deployment.html | 5 maestro-1.1.0/maestro/inst/doc/maestro-6-deployment.qmd | 2 maestro-1.1.0/maestro/inst/doc/maestro-7-tag-reference.html | 22 maestro-1.1.0/maestro/inst/doc/maestro-7-tag-reference.qmd | 16 maestro-1.1.0/maestro/inst/doc/maestro-8-conditionals.html | 42 maestro-1.1.0/maestro/man/MaestroPipeline.Rd | 21 maestro-1.1.0/maestro/man/MaestroSchedule.Rd | 6 maestro-1.1.0/maestro/man/build_schedule.Rd | 17 maestro-1.1.0/maestro/man/dot-prev_on_cycle.Rd |only maestro-1.1.0/maestro/man/dot-run_sequence_days_out.Rd |only maestro-1.1.0/maestro/man/dot-run_sequence_min_days_out.Rd |only maestro-1.1.0/maestro/man/figures/README-/unnamed-chunk-2.svg |only maestro-1.1.0/maestro/man/figures/README-/unnamed-chunk-3.svg | 2 maestro-1.1.0/maestro/man/figures/orchestrator.svg |only maestro-1.1.0/maestro/man/get_network.Rd |only maestro-1.1.0/maestro/man/get_run_sequence.Rd | 9 maestro-1.1.0/maestro/man/maestro_tags.Rd | 18 maestro-1.1.0/maestro/man/parse_maestro_start_time.Rd |only maestro-1.1.0/maestro/man/show_network.Rd | 6 maestro-1.1.0/maestro/man/suggest_orch_frequency.Rd | 4 maestro-1.1.0/maestro/tests/testthat/_snaps/get_slot_usage.md | 6 maestro-1.1.0/maestro/tests/testthat/_snaps/run_schedule.md | 102 maestro-1.1.0/maestro/tests/testthat/test-dags.R | 10 maestro-1.1.0/maestro/tests/testthat/test-get_run_sequence.R | 82 maestro-1.1.0/maestro/tests/testthat/test-multicore.R | 33 maestro-1.1.0/maestro/tests/testthat/test-prev_on_cycle.R |only maestro-1.1.0/maestro/tests/testthat/test-roclets.R | 75 maestro-1.1.0/maestro/tests/testthat/test-run_schedule.R | 417 ++- maestro-1.1.0/maestro/tests/testthat/test-show_network.R | 12 maestro-1.1.0/maestro/tests/testthat/test-utils.R | 59 maestro-1.1.0/maestro/tests/testthat/test_pipelines/test_multi_fun_pipeline.R | 1 maestro-1.1.0/maestro/tests/testthat/test_pipelines/test_multi_fun_pipeline_one_bad.R | 1 maestro-1.1.0/maestro/tests/testthat/test_pipelines/test_pipeline_daily_good.R | 1 maestro-1.1.0/maestro/tests/testthat/test_pipelines/test_pipeline_daily_single_bad.R | 2 maestro-1.1.0/maestro/tests/testthat/test_pipelines/test_pipeline_daily_single_good.R | 7 maestro-1.1.0/maestro/tests/testthat/test_pipelines/test_pipeline_monthday_wrong_freq.R |only maestro-1.1.0/maestro/tests/testthat/test_pipelines/test_pipeline_monthly_monthday.R |only maestro-1.1.0/maestro/tests/testthat/test_pipelines/test_pipeline_weekday_wrong_freq.R |only maestro-1.1.0/maestro/tests/testthat/test_pipelines/test_pipeline_weekly_weekday.R |only maestro-1.1.0/maestro/tests/testthat/test_pipelines_run_all_good/chatty.R | 1 maestro-1.1.0/maestro/tests/testthat/test_pipelines_run_all_good/pipe1.R | 10 maestro-1.1.0/maestro/vignettes/maestro-1-quick-start.Rmd | 10 maestro-1.1.0/maestro/vignettes/maestro-2-motivation-concepts.qmd | 237 + maestro-1.1.0/maestro/vignettes/maestro-3-advanced-scheduling.qmd | 6 maestro-1.1.0/maestro/vignettes/maestro-4-directed-acyclic-graphs.Rmd | 10 maestro-1.1.0/maestro/vignettes/maestro-6-deployment.qmd | 2 maestro-1.1.0/maestro/vignettes/maestro-7-tag-reference.qmd | 16 81 files changed, 2190 insertions(+), 2143 deletions(-)
Title: Early Detection of Public Health Threats from Social Media Data
Description: It allows you to automatically monitor trends of social media messages by time, place and topic aiming at detecting public health threats early through the detection of signals (i.e., an unusual increase in the number of messages per time, topic and location). It was designed to focus on infectious diseases, and it can be extended to all hazards or other fields of study by modifying the topics and keywords. More information on the original package 'epitweetr' is available in the peer-review publication Espinosa et al. (2022) <doi:10.2807/1560-7917.ES.2022.27.39.2200177>.
Author: Laura Espinosa [aut, fnd, cre] ,
Francisco Orchard [aut, ctr] ,
Gianfranco Spiteri [ctb, fnd],
Ariana Wijermans [ctb] ,
Thomas Mollet [ctb] ,
Adrian Prodan [ctb],
Martin Norling [ctb],
Enrique Delgado [ctb],
Thomas Czernichow [ctb],
Maria Prieto Gonz [...truncated...]
Maintainer: Laura Espinosa <laura.espinosa@ecdc.europa.eu>
Diff between episomer versions 3.0.32 dated 2026-03-18 and 3.0.34 dated 2026-04-20
DESCRIPTION | 10 +++++----- MD5 | 8 ++++---- R/fs.R | 2 +- java/ecdc-episomer-bundle_2.13-1.0-source.zip |binary man/fs_loop.Rd | 2 +- 5 files changed, 11 insertions(+), 11 deletions(-)
Title: Dynamic Shrinkage Process and Change Point Detection
Description: Provides efficient Markov chain Monte Carlo (MCMC) algorithms for
dynamic shrinkage processes, which extend global-local shrinkage priors to
the time series setting by allowing shrinkage to depend on its own past.
These priors yield locally adaptive estimates, useful for time series and
regression functions with irregular features. The package includes full MCMC
implementations for trend filtering using dynamic shrinkage on signal differences,
producing locally constant or linear fits with adaptive credible bands.
Also included are models with static shrinkage and normal-inverse-Gamma priors for comparison.
Additional tools cover dynamic regression with time-varying coefficients and
B-spline models with shrinkage on basis differences, allowing for flexible
curve-fitting with unequally spaced data. Some support for heteroscedastic errors,
outlier detection, and change point estimation.
Methods in this package are described in Kowal et al. (2019) <doi:10.1111/rssb.12325>,
Wu et al. [...truncated...]
Author: Daniel R. Kowal [aut, cph],
Haoxuan Wu [aut],
Toryn Schafer [aut, cre] ,
Jason B. Cho [aut],
David S. Matteson [aut]
Maintainer: Toryn Schafer <toryn27@gmail.com>
Diff between dsp versions 1.2.0 dated 2025-08-19 and 1.3.0 dated 2026-04-20
DESCRIPTION | 8 MD5 | 21 +- NEWS.md | 5 R/dsp_model.R | 89 +++++++-- R/plotmethods.R | 506 ++++++++++++++++++++++++++++++++++-------------------- R/print.R | 14 - build/partial.rdb |binary inst/dev |only man/dsp_fit.Rd | 36 +++ man/dsp_spec.Rd | 4 man/plot.dsp.Rd | 89 ++++++++- src/Makevars | 1 12 files changed, 536 insertions(+), 237 deletions(-)
Title: Slice into 'Zarr' Arrays
Description: An implementation of chunked, compressed,
N-dimensional arrays for R. 'Zarr' spec V2 (2024)
<doi:10.5281/zenodo.11320255>.
Author: David Blodgett [cre, aut] ,
Mark Keller [aut] ,
Artuer Manukyan [aut] ,
zarr-developers [cph]
Maintainer: David Blodgett <dblodgett@usgs.gov>
Diff between pizzarr versions 0.1.2 dated 2026-04-06 and 0.2.0 dated 2026-04-20
pizzarr-0.1.2/pizzarr/man/get_parallel_settings.Rd |only pizzarr-0.1.2/pizzarr/tests/testthat/test-01-parallel.R |only pizzarr-0.2.0/pizzarr/DESCRIPTION | 15 pizzarr-0.2.0/pizzarr/MD5 | 135 +++- pizzarr-0.2.0/pizzarr/NAMESPACE | 106 +-- pizzarr-0.2.0/pizzarr/NEWS.md | 76 ++ pizzarr-0.2.0/pizzarr/R/array-nested.R | 30 - pizzarr-0.2.0/pizzarr/R/config.R |only pizzarr-0.2.0/pizzarr/R/creation.R | 55 + pizzarr-0.2.0/pizzarr/R/extendr-wrappers.R |only pizzarr-0.2.0/pizzarr/R/indexing.R | 30 - pizzarr-0.2.0/pizzarr/R/meta.R | 26 pizzarr-0.2.0/pizzarr/R/normalize.R | 23 pizzarr-0.2.0/pizzarr/R/numcodecs.R | 44 - pizzarr-0.2.0/pizzarr/R/onload.R | 25 pizzarr-0.2.0/pizzarr/R/options.R | 133 ++-- pizzarr-0.2.0/pizzarr/R/slicing.R | 2 pizzarr-0.2.0/pizzarr/R/storage-utils.R | 39 - pizzarr-0.2.0/pizzarr/R/stores.R | 232 +++++--- pizzarr-0.2.0/pizzarr/R/utils.R | 20 pizzarr-0.2.0/pizzarr/R/zarr-array.R | 283 +++------- pizzarr-0.2.0/pizzarr/R/zarrs-bridge.R |only pizzarr-0.2.0/pizzarr/R/zarrs-dispatch.R |only pizzarr-0.2.0/pizzarr/README.md | 121 ++++ pizzarr-0.2.0/pizzarr/build |only pizzarr-0.2.0/pizzarr/inst/doc |only pizzarr-0.2.0/pizzarr/inst/extdata/benchmark-xarray.py |only pizzarr-0.2.0/pizzarr/inst/extdata/benchmark-zarrs-vs-xarray.R |only pizzarr-0.2.0/pizzarr/man/DirectoryStore.Rd | 24 pizzarr-0.2.0/pizzarr/man/GcsStore.Rd |only pizzarr-0.2.0/pizzarr/man/HttpStore.Rd | 33 - pizzarr-0.2.0/pizzarr/man/MemoryStore.Rd | 7 pizzarr-0.2.0/pizzarr/man/S3Store.Rd |only pizzarr-0.2.0/pizzarr/man/Store.Rd | 21 pizzarr-0.2.0/pizzarr/man/ZarrArray.Rd | 22 pizzarr-0.2.0/pizzarr/man/can_use_zarrs.Rd |only pizzarr-0.2.0/pizzarr/man/can_use_zarrs_create.Rd |only pizzarr-0.2.0/pizzarr/man/can_use_zarrs_write.Rd |only pizzarr-0.2.0/pizzarr/man/compressor_to_preset.Rd |only pizzarr-0.2.0/pizzarr/man/get_codec.Rd | 1 pizzarr-0.2.0/pizzarr/man/init_array.Rd | 3 pizzarr-0.2.0/pizzarr/man/is_zarrs_available.Rd |only pizzarr-0.2.0/pizzarr/man/pizzarr_compiled_features.Rd |only pizzarr-0.2.0/pizzarr/man/pizzarr_config.Rd |only pizzarr-0.2.0/pizzarr/man/pizzarr_option_defaults.Rd | 48 - pizzarr-0.2.0/pizzarr/man/pizzarr_upgrade.Rd |only pizzarr-0.2.0/pizzarr/man/selection_to_ranges.Rd |only pizzarr-0.2.0/pizzarr/man/zarr_create.Rd | 8 pizzarr-0.2.0/pizzarr/man/zarrs_compiled_features.Rd |only pizzarr-0.2.0/pizzarr/tests/testthat/setup-utils.R | 3 pizzarr-0.2.0/pizzarr/tests/testthat/test-array.R | 31 - pizzarr-0.2.0/pizzarr/tests/testthat/test-config.R |only pizzarr-0.2.0/pizzarr/tests/testthat/test-http-store.R | 18 pizzarr-0.2.0/pizzarr/tests/testthat/test-onload.R |only pizzarr-0.2.0/pizzarr/tests/testthat/test-options.R | 86 +-- pizzarr-0.2.0/pizzarr/tests/testthat/test-v3.R | 63 ++ pizzarr-0.2.0/pizzarr/tests/testthat/test-zarrs-bridge.R |only pizzarr-0.2.0/pizzarr/tests/testthat/test-zarrs-create.R |only pizzarr-0.2.0/pizzarr/tests/testthat/test-zarrs-dispatch.R |only pizzarr-0.2.0/pizzarr/tests/testthat/test-zarrs-gcs.R |only pizzarr-0.2.0/pizzarr/tests/testthat/test-zarrs-http.R |only pizzarr-0.2.0/pizzarr/tests/testthat/test-zarrs-metadata.R |only pizzarr-0.2.0/pizzarr/tests/testthat/test-zarrs-retrieve.R |only pizzarr-0.2.0/pizzarr/tests/testthat/test-zarrs-s3.R |only pizzarr-0.2.0/pizzarr/tests/testthat/test-zarrs-store-cache.R |only pizzarr-0.2.0/pizzarr/tests/testthat/test-zarrs-write.R |only pizzarr-0.2.0/pizzarr/tools |only pizzarr-0.2.0/pizzarr/vignettes |only 68 files changed, 1036 insertions(+), 727 deletions(-)
Title: Compute Decision Interval and Average Run Length for CUSUM
Charts
Description: Computation of decision intervals (H) and average run lengths (ARL) for CUSUM charts. Details of the method are seen in Hawkins and Olwell (2012): Cumulative sum charts and charting for quality improvement, Springer Science & Business Media.
Author: Douglas M. Hawkins [aut],
David H. Olwell [aut],
Boxiang Wang [aut, cre]
Maintainer: Boxiang Wang <boxiang-wang@uiowa.edu>
Diff between CUSUMdesign versions 1.1.5 dated 2020-02-24 and 1.1.6 dated 2026-04-20
DESCRIPTION | 22 +++++++++++++++++----- MD5 | 4 ++-- R/getH.R | 1 + 3 files changed, 20 insertions(+), 7 deletions(-)
Title: Continuous Time Autoregressive Models
Description: Provides tools for fitting continuous-time autoregressive (CAR) and
complex CAR (CZAR) models for irregularly sampled time series using an exact
Gaussian state-space formulation and Kalman filtering/smoothing. Implements
maximum-likelihood estimation with stable parameterizations of characteristic
roots, model selection via AIC, residual and spectral diagnostics, forecasting
and simulation, and extraction of fitted state estimates. Methods are
described in Wang (2013) <doi:10.18637/jss.v053.i05>.
Author: Granville Tunnicliffe-Wilson [aut] ,
Zhu Wang [cre, aut] ,
Cleve Moler [ctb, cph] ,
Jack Dongarra [ctb, cph] ,
Jim Bunch [ctb, cph] ,
G. W. Stewart [ctb, cph] ,
John Nash [ctb]
Maintainer: Zhu Wang <zwang145@uthsc.edu>
Diff between cts versions 1.0-24 dated 2026-03-17 and 1.0-25 dated 2026-04-20
DESCRIPTION | 8 +-- MD5 | 71 ++++++++++++++++--------------- NEWS | 21 +++++++++ NEWS.md |only build/vignette.rds |binary inst/doc/cts_Fortran_source_diagram.pdf |only inst/doc/cts_Fortran_source_diagram.pptx |only inst/doc/kf.html | 44 ++++++++++++------- src/Makevars | 9 +++ src/a9rntc.f | 12 ++--- src/a9rntd.f | 14 ++---- src/a9rnti.f | 15 +++--- src/a9rntl.f | 14 +++--- src/a9rntr.f | 14 ++---- src/balinv.f | 2 src/complete.f | 31 ++++++++----- src/cspec.f | 4 + src/cts_init.c | 47 +++++++++++++------- src/d1rply.f | 2 src/d3rply.f | 2 src/d5rply.f | 13 ++--- src/d7rply.f | 7 ++- src/d9rply.f | 2 src/dblepr.f |only src/drpoly.f | 10 ++-- src/envirn.f | 8 --- src/hqrort.f | 1 src/i0tk00.f | 4 - src/i1mach.f | 7 --- src/intpr.f |only src/istkgt.f | 4 - src/istkqu.f | 4 - src/istkrl.f | 4 - src/loop.f | 18 +++++-- src/mutil.f | 10 ++-- src/resg0new.f | 3 - src/revg1.f | 2 src/stkdmp.f | 16 +++--- src/u9dmp.f | 16 +++--- 39 files changed, 257 insertions(+), 182 deletions(-)
Title: Generate UpSet Plots of VP and HP Based on the ASV Concept
Description: Using matrix layout to visualize the unique, common, or individual contribution of each predictor (or matrix of predictors) towards explained variation on different models. These contributions were derived from variation partitioning (VP) and hierarchical partitioning (HP), applying the algorithm of "Lai et al. (2022) Generalizing hierarchical and variation partitioning in multiple regression and canonical analyses using the rdacca.hp R package.Methods in Ecology and Evolution, 13: 782-788 <doi:10.1111/2041-210X.13800>".
Author: Jiangshan Lai [aut, cre] ,
Yao Liu [aut],
Bangken Ying [aut]
Maintainer: Jiangshan Lai <lai@njfu.edu.cn>
Diff between upset.hp versions 0.0.5 dated 2025-10-29 and 0.0.6 dated 2026-04-20
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- inst/CITATION | 8 ++++---- 3 files changed, 10 insertions(+), 10 deletions(-)
Title: Network Estimation, Bootstrap, and Higher-Order Analysis
Description: Estimate, compare, and analyze dynamic and psychological networks
using a unified interface. Provides transition network analysis
estimation (transition, frequency, co-occurrence, attention-weighted)
Saqr et al. (2025) <doi:10.1145/3706468.3706513>, psychological
network methods (correlation, partial correlation, 'graphical lasso',
'Ising') Saqr, Beck, and Lopez-Pernas (2024)
<doi:10.1007/978-3-031-54464-4_19>,
and higher-order network methods including higher-order networks,
higher-order network embedding, hyper-path anomaly, and multi-order
generative model. Supports bootstrap inference, permutation testing,
split-half reliability, centrality stability analysis, mixed Markov
models, multi-cluster multi-layer networks and clustering.
Author: Mohammed Saqr [aut, cre, cph],
Sonsoles Lopez-Pernas [aut]
Maintainer: Mohammed Saqr <saqr@saqr.me>
Diff between Nestimate versions 0.3.0 dated 2026-04-08 and 0.4.3 dated 2026-04-20
Nestimate-0.3.0/Nestimate/data/ai_cat.rda |only Nestimate-0.3.0/Nestimate/data/ai_detailed.rda |only Nestimate-0.3.0/Nestimate/data/ai_super.rda |only Nestimate-0.3.0/Nestimate/data/ai_wide.rda |only Nestimate-0.3.0/Nestimate/data/human_ai.rda |only Nestimate-0.3.0/Nestimate/data/human_ai_cat.rda |only Nestimate-0.3.0/Nestimate/data/human_ai_edges.rda |only Nestimate-0.3.0/Nestimate/data/human_ai_super.rda |only Nestimate-0.3.0/Nestimate/data/human_cat.rda |only Nestimate-0.3.0/Nestimate/data/human_detailed.rda |only Nestimate-0.3.0/Nestimate/data/human_super.rda |only Nestimate-0.3.0/Nestimate/data/human_wide.rda |only Nestimate-0.3.0/Nestimate/inst/doc/co-occurrence-networks.R |only Nestimate-0.3.0/Nestimate/inst/doc/co-occurrence-networks.Rmd |only Nestimate-0.3.0/Nestimate/inst/doc/co-occurrence-networks.html |only Nestimate-0.3.0/Nestimate/inst/doc/link-prediction-association-rules.R |only Nestimate-0.3.0/Nestimate/inst/doc/link-prediction-association-rules.Rmd |only Nestimate-0.3.0/Nestimate/inst/doc/link-prediction-association-rules.html |only Nestimate-0.3.0/Nestimate/inst/doc/psychological-networks.R |only Nestimate-0.3.0/Nestimate/inst/doc/psychological-networks.Rmd |only Nestimate-0.3.0/Nestimate/inst/doc/psychological-networks.html |only Nestimate-0.3.0/Nestimate/man/aggregate_weights.Rd |only Nestimate-0.3.0/Nestimate/man/centrality.Rd |only Nestimate-0.3.0/Nestimate/man/cluster_data.Rd |only Nestimate-0.3.0/Nestimate/man/human_ai_edges.Rd |only Nestimate-0.3.0/Nestimate/man/permutation_test.Rd |only Nestimate-0.3.0/Nestimate/man/prepare_data.Rd |only Nestimate-0.3.0/Nestimate/man/reliability.Rd |only Nestimate-0.3.0/Nestimate/man/vibcoding-data.Rd |only Nestimate-0.3.0/Nestimate/tests/testthat/test-cluster_data.R |only Nestimate-0.3.0/Nestimate/tests/testthat/test-permutation_test.R |only Nestimate-0.3.0/Nestimate/tests/testthat/test-prepare_data.R |only Nestimate-0.3.0/Nestimate/tests/testthat/test-reliability.R |only Nestimate-0.3.0/Nestimate/tests/testthat/testthat-problems.rds |only Nestimate-0.3.0/Nestimate/vignettes/co-occurrence-networks.Rmd |only Nestimate-0.3.0/Nestimate/vignettes/link-prediction-association-rules.Rmd |only Nestimate-0.3.0/Nestimate/vignettes/psychological-networks.Rmd |only Nestimate-0.4.3/Nestimate/DESCRIPTION | 18 Nestimate-0.4.3/Nestimate/MD5 | 265 +- Nestimate-0.4.3/Nestimate/NAMESPACE | 54 Nestimate-0.4.3/Nestimate/NEWS.md | 69 Nestimate-0.4.3/Nestimate/R/Nestimate-package.R | 3 Nestimate-0.4.3/Nestimate/R/association_rules.R | 110 - Nestimate-0.4.3/Nestimate/R/boot_glasso.R | 30 Nestimate-0.4.3/Nestimate/R/build_network.R | 72 Nestimate-0.4.3/Nestimate/R/centrality_measures.R | 41 Nestimate-0.4.3/Nestimate/R/centrality_stability.R | 2 Nestimate-0.4.3/Nestimate/R/cluster_data.R | 41 Nestimate-0.4.3/Nestimate/R/co_occurrence.R |only Nestimate-0.4.3/Nestimate/R/data.R | 182 - Nestimate-0.4.3/Nestimate/R/distribution_plot.R |only Nestimate-0.4.3/Nestimate/R/estimate_network.R | 146 + Nestimate-0.4.3/Nestimate/R/estimator_registry.R | 3 Nestimate-0.4.3/Nestimate/R/estimators.R | 58 Nestimate-0.4.3/Nestimate/R/gimme.R | 6 Nestimate-0.4.3/Nestimate/R/hon.R | 17 Nestimate-0.4.3/Nestimate/R/hypa.R | 135 + Nestimate-0.4.3/Nestimate/R/markov.R |only Nestimate-0.4.3/Nestimate/R/mcml.R | 33 Nestimate-0.4.3/Nestimate/R/mgm.R |only Nestimate-0.4.3/Nestimate/R/mlvar.R |only Nestimate-0.4.3/Nestimate/R/mmm.R | 20 Nestimate-0.4.3/Nestimate/R/mogen.R | 23 Nestimate-0.4.3/Nestimate/R/nct.R |only Nestimate-0.4.3/Nestimate/R/pathways.R | 47 Nestimate-0.4.3/Nestimate/R/permutation_test.R | 35 Nestimate-0.4.3/Nestimate/R/plot-utils.R |only Nestimate-0.4.3/Nestimate/R/prepare_data.R | 14 Nestimate-0.4.3/Nestimate/R/reliability.R | 14 Nestimate-0.4.3/Nestimate/R/sequence_compare.R |only Nestimate-0.4.3/Nestimate/R/sequence_plot.R |only Nestimate-0.4.3/Nestimate/R/simplicial.R | 28 Nestimate-0.4.3/Nestimate/R/utils.R | 38 Nestimate-0.4.3/Nestimate/R/wtna.R | 35 Nestimate-0.4.3/Nestimate/README.md | 418 ++-- Nestimate-0.4.3/Nestimate/build/vignette.rds |binary Nestimate-0.4.3/Nestimate/data/ai_long.rda |only Nestimate-0.4.3/Nestimate/data/chatgpt_srl.rda |only Nestimate-0.4.3/Nestimate/data/human_long.rda |only Nestimate-0.4.3/Nestimate/data/trajectories.rda |only Nestimate-0.4.3/Nestimate/inst/doc/clustering.R | 32 Nestimate-0.4.3/Nestimate/inst/doc/clustering.Rmd | 40 Nestimate-0.4.3/Nestimate/inst/doc/clustering.html | 188 -- Nestimate-0.4.3/Nestimate/inst/doc/markov-stability.R |only Nestimate-0.4.3/Nestimate/inst/doc/markov-stability.Rmd |only Nestimate-0.4.3/Nestimate/inst/doc/markov-stability.html |only Nestimate-0.4.3/Nestimate/inst/doc/sequence-comparison.R |only Nestimate-0.4.3/Nestimate/inst/doc/sequence-comparison.Rmd |only Nestimate-0.4.3/Nestimate/inst/doc/sequence-comparison.html |only Nestimate-0.4.3/Nestimate/inst/doc/sequence-plots.R |only Nestimate-0.4.3/Nestimate/inst/doc/sequence-plots.Rmd |only Nestimate-0.4.3/Nestimate/inst/doc/sequence-plots.html |only Nestimate-0.4.3/Nestimate/inst/doc/transition-networks.R | 84 Nestimate-0.4.3/Nestimate/inst/doc/transition-networks.Rmd | 192 -- Nestimate-0.4.3/Nestimate/inst/doc/transition-networks.html | 912 +++------- Nestimate-0.4.3/Nestimate/man/build_atna.Rd |only Nestimate-0.4.3/Nestimate/man/build_clusters.Rd |only Nestimate-0.4.3/Nestimate/man/build_cna.Rd |only Nestimate-0.4.3/Nestimate/man/build_cor.Rd |only Nestimate-0.4.3/Nestimate/man/build_ftna.Rd |only Nestimate-0.4.3/Nestimate/man/build_glasso.Rd |only Nestimate-0.4.3/Nestimate/man/build_hypa.Rd | 21 Nestimate-0.4.3/Nestimate/man/build_ising.Rd |only Nestimate-0.4.3/Nestimate/man/build_mcml.Rd | 2 Nestimate-0.4.3/Nestimate/man/build_mlvar.Rd |only Nestimate-0.4.3/Nestimate/man/build_mmm.Rd | 4 Nestimate-0.4.3/Nestimate/man/build_network.Rd | 9 Nestimate-0.4.3/Nestimate/man/build_pcor.Rd |only Nestimate-0.4.3/Nestimate/man/build_simplicial.Rd | 2 Nestimate-0.4.3/Nestimate/man/build_tna.Rd |only Nestimate-0.4.3/Nestimate/man/centrality_stability.Rd | 2 Nestimate-0.4.3/Nestimate/man/chatgpt_srl.Rd |only Nestimate-0.4.3/Nestimate/man/cluster_mmm.Rd | 4 Nestimate-0.4.3/Nestimate/man/cluster_network.Rd | 6 Nestimate-0.4.3/Nestimate/man/cluster_summary.Rd | 15 Nestimate-0.4.3/Nestimate/man/coefs.Rd |only Nestimate-0.4.3/Nestimate/man/cooccurrence.Rd |only Nestimate-0.4.3/Nestimate/man/distribution_plot.Rd |only Nestimate-0.4.3/Nestimate/man/group_regulation_long.Rd | 1 Nestimate-0.4.3/Nestimate/man/long-data.Rd |only Nestimate-0.4.3/Nestimate/man/markov_stability.Rd |only Nestimate-0.4.3/Nestimate/man/nct.Rd |only Nestimate-0.4.3/Nestimate/man/net_aggregate_weights.Rd |only Nestimate-0.4.3/Nestimate/man/net_centrality.Rd |only Nestimate-0.4.3/Nestimate/man/network_reliability.Rd |only Nestimate-0.4.3/Nestimate/man/passage_time.Rd |only Nestimate-0.4.3/Nestimate/man/pathways.Rd | 14 Nestimate-0.4.3/Nestimate/man/permutation.Rd |only Nestimate-0.4.3/Nestimate/man/plot.net_clustering.Rd | 4 Nestimate-0.4.3/Nestimate/man/plot.net_reliability.Rd | 4 Nestimate-0.4.3/Nestimate/man/plot.net_sequence_comparison.Rd |only Nestimate-0.4.3/Nestimate/man/predictability.Rd | 5 Nestimate-0.4.3/Nestimate/man/prepare.Rd |only Nestimate-0.4.3/Nestimate/man/print.nestimate_data.Rd | 4 Nestimate-0.4.3/Nestimate/man/print.net_clustering.Rd | 4 Nestimate-0.4.3/Nestimate/man/print.net_mlvar.Rd |only Nestimate-0.4.3/Nestimate/man/print.net_nct.Rd |only Nestimate-0.4.3/Nestimate/man/print.net_permutation.Rd | 4 Nestimate-0.4.3/Nestimate/man/print.net_permutation_group.Rd | 4 Nestimate-0.4.3/Nestimate/man/print.net_reliability.Rd | 4 Nestimate-0.4.3/Nestimate/man/print.net_sequence_comparison.Rd |only Nestimate-0.4.3/Nestimate/man/sequence_compare.Rd |only Nestimate-0.4.3/Nestimate/man/sequence_plot.Rd |only Nestimate-0.4.3/Nestimate/man/summary.net_clustering.Rd | 4 Nestimate-0.4.3/Nestimate/man/summary.net_hypa.Rd | 9 Nestimate-0.4.3/Nestimate/man/summary.net_mlvar.Rd |only Nestimate-0.4.3/Nestimate/man/summary.net_permutation.Rd | 4 Nestimate-0.4.3/Nestimate/man/summary.net_permutation_group.Rd | 4 Nestimate-0.4.3/Nestimate/man/summary.net_sequence_comparison.Rd |only Nestimate-0.4.3/Nestimate/man/trajectories.Rd |only Nestimate-0.4.3/Nestimate/tests/testthat/helper-simulate.R | 151 + Nestimate-0.4.3/Nestimate/tests/testthat/test-association_rules.R | 33 Nestimate-0.4.3/Nestimate/tests/testthat/test-association_rules_arules.R |only Nestimate-0.4.3/Nestimate/tests/testthat/test-boot_glasso.R | 64 Nestimate-0.4.3/Nestimate/tests/testthat/test-bootstrap_network.R | 6 Nestimate-0.4.3/Nestimate/tests/testthat/test-build_clusters.R |only Nestimate-0.4.3/Nestimate/tests/testthat/test-build_network.R | 142 + Nestimate-0.4.3/Nestimate/tests/testthat/test-centrality_stability.R | 16 Nestimate-0.4.3/Nestimate/tests/testthat/test-cograph_network.R | 26 Nestimate-0.4.3/Nestimate/tests/testthat/test-cooccurrence.R |only Nestimate-0.4.3/Nestimate/tests/testthat/test-distribution_plot.R |only Nestimate-0.4.3/Nestimate/tests/testthat/test-estimator_ising.R | 8 Nestimate-0.4.3/Nestimate/tests/testthat/test-gimme.R | 154 - Nestimate-0.4.3/Nestimate/tests/testthat/test-hon.R | 74 Nestimate-0.4.3/Nestimate/tests/testthat/test-honem.R | 338 +++ Nestimate-0.4.3/Nestimate/tests/testthat/test-hypa.R | 248 ++ Nestimate-0.4.3/Nestimate/tests/testthat/test-link_prediction.R | 8 Nestimate-0.4.3/Nestimate/tests/testthat/test-markov.R |only Nestimate-0.4.3/Nestimate/tests/testthat/test-mcml.R | 86 Nestimate-0.4.3/Nestimate/tests/testthat/test-mgm-moderated.R |only Nestimate-0.4.3/Nestimate/tests/testthat/test-mlvar.R |only Nestimate-0.4.3/Nestimate/tests/testthat/test-mmm.R | 4 Nestimate-0.4.3/Nestimate/tests/testthat/test-mogen.R | 361 +++ Nestimate-0.4.3/Nestimate/tests/testthat/test-network_reliability.R |only Nestimate-0.4.3/Nestimate/tests/testthat/test-pathways.R | 36 Nestimate-0.4.3/Nestimate/tests/testthat/test-permutation.R |only Nestimate-0.4.3/Nestimate/tests/testthat/test-prepare.R |only Nestimate-0.4.3/Nestimate/tests/testthat/test-sequence_plot.R |only Nestimate-0.4.3/Nestimate/tests/testthat/test-simplicial.R | 97 + Nestimate-0.4.3/Nestimate/tests/testthat/test-utils.R | 1 Nestimate-0.4.3/Nestimate/tests/testthat/test-wtna.R | 158 + Nestimate-0.4.3/Nestimate/vignettes/clustering.Rmd | 40 Nestimate-0.4.3/Nestimate/vignettes/markov-stability.Rmd |only Nestimate-0.4.3/Nestimate/vignettes/sequence-comparison.Rmd |only Nestimate-0.4.3/Nestimate/vignettes/sequence-plots.Rmd |only Nestimate-0.4.3/Nestimate/vignettes/transition-networks.Rmd | 192 -- 186 files changed, 3727 insertions(+), 2055 deletions(-)
Title: Testing Zero Correlation
Description: Computes the test statistics for examining the significance of autocorrelation in univariate time series, cross-correlation in bivariate time series, Pearson correlations in multivariate series and test statistics for i.i.d. property of univariate series given in Dalla, Giraitis and Phillips (2022), <https://www.cambridge.org/core/journals/econometric-theory/article/abs/robust-tests-for-white-noise-and-crosscorrelation/4D77C12C52433F4C6735E584C779403A>, <https://elischolar.library.yale.edu/cowles-discussion-paper-series/57/>.
Author: Violetta Dalla [aut, cre],
Liudas Giraitis [aut],
Peter C. B. Phillips [aut]
Maintainer: Violetta Dalla <vidalla@econ.uoa.gr>
Diff between testcorr versions 0.3.0 dated 2025-06-12 and 0.4.0 dated 2026-04-20
DESCRIPTION | 8 ++++---- MD5 | 18 +++++++++--------- NEWS.md | 4 ++++ R/testcorr.R | 26 +++++++++++++------------- build/partial.rdb |binary build/vignette.rds |binary inst/doc/testcorr.Rnw | 4 ++-- inst/doc/testcorr.pdf |binary vignettes/testcorr.Rnw | 4 ++-- vignettes/testcorr.bib | 2 +- 10 files changed, 35 insertions(+), 31 deletions(-)
Title: List, Query, Manipulate System Processes
Description: List, query and manipulate all system processes, on
'Windows', 'Linux' and 'macOS'.
Author: Jay Loden [aut],
Dave Daeschler [aut],
Giampaolo Rodola' [aut],
Gabor Csardi [aut, cre],
Posit Software, PBC [cph, fnd]
Maintainer: Gabor Csardi <csardi.gabor@gmail.com>
Diff between ps versions 1.9.2 dated 2026-03-31 and 1.9.3 dated 2026-04-20
DESCRIPTION | 8 +-- MD5 | 18 +++---- NEWS.md | 10 ++++ R/ps.R | 6 ++ R/testthat-reporter.R | 11 ++++ man/ps-package.Rd | 2 man/ps.Rd | 5 ++ src/api-linux.c | 105 +++++++++++++++++++++++++++++++++++-------- tests/testthat/test-common.R | 9 +++ tests/testthat/test-linux.R | 67 +++++++++++++++++++++++++++ 10 files changed, 207 insertions(+), 34 deletions(-)
Title: Model Wrappers for Poisson Regression
Description: Bindings for Poisson regression models for use with the
'parsnip' package. Models include simple generalized linear models,
Bayesian models, and zero-inflated Poisson models (Zeileis, Kleiber,
and Jackman (2008) <doi:10.18637/jss.v027.i08>).
Author: Max Kuhn [aut] ,
Hannah Frick [aut, cre] ,
Posit Software, PBC [cph, fnd]
Maintainer: Hannah Frick <hannah@posit.co>
Diff between poissonreg versions 1.0.1 dated 2022-08-22 and 1.0.2 dated 2026-04-20
poissonreg-1.0.1/poissonreg/R/0_imports.R |only poissonreg-1.0.1/poissonreg/R/poisson_reg.R |only poissonreg-1.0.1/poissonreg/R/poisson_reg_data.R |only poissonreg-1.0.1/poissonreg/tests/testthat/_snaps/poisson-reg.md |only poissonreg-1.0.1/poissonreg/tests/testthat/helper-objects.R |only poissonreg-1.0.1/poissonreg/tests/testthat/test-poisson-reg-hurdle.R |only poissonreg-1.0.1/poissonreg/tests/testthat/test-poisson-reg-zeroinfl.R |only poissonreg-1.0.1/poissonreg/tests/testthat/test-poisson-reg.R |only poissonreg-1.0.2/poissonreg/DESCRIPTION | 33 ++-- poissonreg-1.0.2/poissonreg/LICENSE | 4 poissonreg-1.0.2/poissonreg/MD5 | 54 ++++---- poissonreg-1.0.2/poissonreg/NAMESPACE | 1 poissonreg-1.0.2/poissonreg/NEWS.md | 28 ++++ poissonreg-1.0.2/poissonreg/R/poisson_reg-data.R |only poissonreg-1.0.2/poissonreg/R/poisson_reg-glmnet.R |only poissonreg-1.0.2/poissonreg/R/poisson_reg-stan.R |only poissonreg-1.0.2/poissonreg/R/poissonreg-package.R | 12 + poissonreg-1.0.2/poissonreg/R/reexports.R | 1 poissonreg-1.0.2/poissonreg/R/tidy.R | 1 poissonreg-1.0.2/poissonreg/R/zzz.R | 67 ---------- poissonreg-1.0.2/poissonreg/README.md | 44 +++--- poissonreg-1.0.2/poissonreg/inst/WORDLIST | 26 +-- poissonreg-1.0.2/poissonreg/man/figures/logo.png |binary poissonreg-1.0.2/poissonreg/man/poissonreg-package.Rd | 12 - poissonreg-1.0.2/poissonreg/man/predict_raw._fishnet.Rd | 2 poissonreg-1.0.2/poissonreg/man/rmd/example.Rmd | 4 poissonreg-1.0.2/poissonreg/tests/spelling.R | 3 poissonreg-1.0.2/poissonreg/tests/testthat/_snaps/poisson_reg-glmnet.md |only poissonreg-1.0.2/poissonreg/tests/testthat/_snaps/poisson_reg-stan.md |only poissonreg-1.0.2/poissonreg/tests/testthat/_snaps/poisson_reg.md |only poissonreg-1.0.2/poissonreg/tests/testthat/helpers.R | 21 ++- poissonreg-1.0.2/poissonreg/tests/testthat/test-poisson_reg-glm.R |only poissonreg-1.0.2/poissonreg/tests/testthat/test-poisson_reg-glmnet.R |only poissonreg-1.0.2/poissonreg/tests/testthat/test-poisson_reg-hurdle.R |only poissonreg-1.0.2/poissonreg/tests/testthat/test-poisson_reg-stan.R |only poissonreg-1.0.2/poissonreg/tests/testthat/test-poisson_reg-zeroinfl.R |only poissonreg-1.0.2/poissonreg/tests/testthat/test-poisson_reg.R |only poissonreg-1.0.2/poissonreg/tests/testthat/test-tidy.R | 7 - 38 files changed, 156 insertions(+), 164 deletions(-)
Title: R Source Packages Manager
Description: Manage a collection/library of R source packages. Discover, document, load, test
source packages. Enable to use those packages as if they were actually installed. Quickly reload
only what is needed on source code change. Run tests and checks in parallel.
Author: Karl Forner [aut, cre, cph]
Maintainer: Karl Forner <karl.forner@gmail.com>
This is a re-admission after prior archival of version 0.2 dated 2025-10-29
Diff between srcpkgs versions 0.2 dated 2025-10-29 and 0.2.1 dated 2026-04-20
DESCRIPTION | 8 MD5 | 52 ++-- R/pkg_check.R | 6 R/pkg_load.R | 4 R/pkg_meta.R | 10 R/pkg_test.R | 4 R/pkg_unload.R | 4 R/pkgs_check.R | 6 R/pkgs_install.R | 7 build/vignette.rds |binary inst/doc/demo.html | 107 ++++++---- inst/doc/testing_and_checking.R | 3 inst/doc/testing_and_checking.Rmd | 3 inst/doc/testing_and_checking.html | 97 ++++----- inst/extdata/examples/dummy_srcpkg/tests/testthat/test_failure.R | 2 inst/extdata/examples/dummy_srcpkg/tests/testthat/test_success.R | 2 man/pkg_check.Rd | 7 man/pkg_load.Rd | 4 man/pkg_test.Rd | 4 man/pkg_unload.Rd | 4 man/pkgs_check.Rd | 7 man/pkgs_install.Rd | 5 tests/testthat/helper-functions.R | 2 tests/testthat/setup.R | 4 tests/testthat/test-pkgs_check.R | 2 tests/testthat/test-pkgs_install.R | 4 vignettes/testing_and_checking.Rmd | 3 27 files changed, 192 insertions(+), 169 deletions(-)
Title: Descriptive Statistics, Summary Tables, and Data Management
Tools
Description: Provides tools for descriptive data analysis,
variable inspection, data management, and tabulation workflows in 'R'.
Summarizes variable metadata, labels, classes, missing values, and
representative values, with support for readable frequency tables,
cross-tabulations, association measures for contingency tables
(Cramer's V, Phi, Goodman-Kruskal Gamma, Kendall's Tau-b, Somers' D,
and others), categorical and continuous summary tables, and
model-based bivariate tables for continuous outcomes, including
APA-style reporting outputs. Includes helpers for interactive
codebooks, variable label extraction, clipboard export, and row-wise
descriptive summaries. Designed to make descriptive analysis and
reporting faster, clearer, and easier to work with in practice.
Author: Amal Tawfik [aut, cre, cph]
Maintainer: Amal Tawfik <amal.tawfik@hesav.ch>
Diff between spicy versions 0.8.0 dated 2026-04-10 and 0.9.0 dated 2026-04-20
DESCRIPTION | 6 MD5 | 64 ++-- NEWS.md | 70 ++++ R/code_book.R | 18 + R/freq.R | 58 ++-- R/freq_print.R | 18 - R/table_continuous.R | 49 ++- R/table_continuous_lm.R | 220 +-------------- R/varlist.R | 192 +++++++++++-- inst/doc/frequency-tables.html | 28 - inst/doc/spicy.html | 26 + inst/doc/summary-tables-reporting.html | 119 ++++---- inst/doc/table-continuous-lm.R | 6 inst/doc/table-continuous-lm.Rmd | 6 inst/doc/table-continuous-lm.html | 53 +-- inst/doc/table-continuous.R | 3 inst/doc/table-continuous.Rmd | 16 - inst/doc/table-continuous.html | 395 +++++++++++++++------------- inst/doc/variable-exploration.html | 2 man/code_book.Rd | 17 + man/freq.Rd | 22 + man/table_continuous.Rd | 29 +- man/table_continuous_lm.Rd | 17 + man/varlist.Rd | 43 ++- tests/testthat/test-code_book.R | 34 ++ tests/testthat/test-freq.R | 104 +++++++ tests/testthat/test-freq_print.R | 15 - tests/testthat/test-table_continuous.R | 40 ++ tests/testthat/test-table_continuous_lm.R | 78 ----- tests/testthat/test-varlist.R | 86 +++++- tools/coverage_table_continuous_lm_probes.R | 55 --- vignettes/table-continuous-lm.Rmd | 6 vignettes/table-continuous.Rmd | 16 - 33 files changed, 1122 insertions(+), 789 deletions(-)
Title: Import Professional Baseball Data from 'Retrosheet'
Description: A collection of tools to import and structure the (currently) single-season
event, game-log, roster, and schedule data available from <https://www.retrosheet.org>.
In particular, the event (a.k.a. play-by-play) files can be especially difficult to parse.
This package does the parsing on those files, returning the requested data in the most
practical R structure to use for sabermetric or other analyses.
Author: Colin Douglas [aut, cre, cph] ,
Richard Scriven [aut, cph]
Maintainer: Colin Douglas <retrosheet@colindougl.as>
Diff between retrosheet versions 1.1.6 dated 2024-02-28 and 1.1.7 dated 2026-04-20
DESCRIPTION | 20 ++-- MD5 | 14 +-- NEWS.md | 5 + R/getPartialGamelog.R | 8 - R/getRetrosheet.R | 64 +++++++++++--- R/retrosheetFields.R | 155 ++++++++++++++++++++++++++---------- tests/testthat/test-getRetrosheet.R | 37 ++++++++ tests/testthat/test-rmarkdown.R | 1 8 files changed, 233 insertions(+), 71 deletions(-)
Title: Siena - Simulation Investigation for Empirical Network Analysis
Description: The main purpose of this package is to perform simulation-based
estimation of stochastic actor-oriented models for longitudinal network
data collected as panel data. Dependent variables can be single or
multivariate networks, which can be directed, non-directed, or two-mode;
and associated actor variables.
There are also functions for testing parameters and checking goodness of fit.
An overview of these models is given in Snijders (2017),
<doi:10.1146/annurev-statistics-060116-054035>.
Author: Tom A.B. Snijders [aut, ctb] ,
Ruth M. Ripley [aut],
Krists Boitmanis [aut, ctb],
Christian Steglich [cre, aut] ,
Johan Koskinen [ctb] ,
Nynke M.D. Niezink [aut, ctb] ,
Viviana Amati [aut, ctb] ,
Christoph Stadtfeld [ctb] ,
James Hollway [ctb] ,
Per [...truncated...]
Maintainer: Christian Steglich <c.e.g.steglich@rug.nl>
Diff between RSiena versions 1.6.4 dated 2026-04-07 and 1.6.6 dated 2026-04-20
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- NEWS.md | 23 +++++++++++++++++++++++ src/siena07utilities.cpp | 7 ++++--- 4 files changed, 34 insertions(+), 10 deletions(-)
Title: Read and Write 'Parquet' Files
Description: Self-sufficient reader and writer for flat 'Parquet' files.
Can read most 'Parquet' data types. Can write many 'R' data types,
including factors and temporal types. See docs for limitations.
Author: Gabor Csardi [aut, cre],
Hannes Muehleisen [aut, cph] ,
Google Inc. [cph],
Apache Software Foundation [cph],
Posit Software, PBC [cph],
RAD Game Tools [cph],
Valve Software [cph],
Tenacious Software LLC [cph],
Facebook, Inc. [cph]
Maintainer: Gabor Csardi <csardi.gabor@gmail.com>
Diff between nanoparquet versions 0.5.0 dated 2026-04-11 and 0.5.1 dated 2026-04-20
DESCRIPTION | 10 - MD5 | 74 ++++++------- NEWS.md | 34 ++++++ R/arrow-schema.R | 5 R/options.R | 13 ++ R/parquet-column-types.R | 27 ++++ R/read-parquet.R | 15 ++ R/utils.R | 2 R/write-parquet.R | 13 +- inst/WORDLIST | 1 man/nanoparquet-types.Rd | 43 +++++-- man/parquet_options.Rd | 11 + man/write_parquet.Rd | 5 src/Makevars.in | 2 src/RParquetOutFile.cpp | 53 ++++++++- src/RParquetReader.cpp | 141 +++++++++++++++++++++++++ src/RParquetReader.h | 7 - src/cpp-utils.cpp | 19 +++ src/lib/ParquetOutFile.cpp | 9 + src/lib/ParquetReader.cpp | 8 - src/lib/memstream.h | 1 src/r-nanoparquet.h | 1 src/r-utils.cpp | 12 ++ src/read2.cpp | 11 + src/rwrapper.cpp | 2 src/write2.cpp | 9 + src/write_stdout.c |only tests/testthat/_snaps/parquet-metadata.md | 32 ++--- tests/testthat/_snaps/read-parquet-2.md | 12 +- tests/testthat/_snaps/read-parquet.md | 2 tests/testthat/_snaps/write-parquet-3.md | 107 +++++++++++++++++-- tests/testthat/data/diann_minimal.parquet |only tests/testthat/helper.R | 8 + tests/testthat/test-read-parquet-5.R | 8 + tests/testthat/test-read-parquet-6.R | 82 ++++++++++++-- tests/testthat/test-read-parquet.R | 23 +++- tests/testthat/test-write-parquet-2.R | 31 +++++ tests/testthat/test-write-parquet-3.R | 120 +++++++++++++++++++++ tools/types.Rmd | 167 ++++++++++++++++-------------- 39 files changed, 920 insertions(+), 200 deletions(-)
Title: 'GGML' Tensor Operations for Machine Learning
Description: Provides 'R' bindings to the 'GGML' tensor library for machine
learning, optimized for 'Vulkan' GPU acceleration with a transparent CPU
fallback. The package features a 'Keras'-like sequential API and a
'PyTorch'-style 'autograd' engine for building, training, and deploying
neural networks. Key capabilities include high-performance 5D tensor
operations, 'f16' precision, and efficient quantization. It supports
native 'ONNX' model import (50+ operators) and 'GGUF' weight loading
from the 'llama.cpp' and 'Hugging Face' ecosystems. Designed for
zero-overhead inference via dedicated weight buffering, it integrates
seamlessly as a 'parsnip' engine for 'tidymodels' and provides
first-class learners for the 'mlr3' framework.
See <https://github.com/ggml-org/ggml> for more information about the
underlying library.
Author: Yuri Baramykov [aut, cre],
Georgi Gerganov [ctb, cph] ,
Jeffrey Quesnelle [ctb, cph] ,
Bowen Peng [ctb, cph] ,
Mozilla Foundation [ctb, cph]
Maintainer: Yuri Baramykov <lbsbmsu@mail.ru>
Diff between ggmlR versions 0.7.2 dated 2026-04-15 and 0.7.5 dated 2026-04-20
ggmlR-0.7.2/ggmlR/src/ggml-quants.c |only ggmlR-0.7.5/ggmlR/DESCRIPTION | 13 ggmlR-0.7.5/ggmlR/MD5 | 190 ggmlR-0.7.5/ggmlR/NAMESPACE | 6 ggmlR-0.7.5/ggmlR/NEWS.md | 24 ggmlR-0.7.5/ggmlR/R/LearnerClassifGGML.R | 1 ggmlR-0.7.5/ggmlR/R/LearnerRegrGGML.R | 1 ggmlR-0.7.5/ggmlR/R/operations.R | 23 ggmlR-0.7.5/ggmlR/R/tensors.R | 20 ggmlR-0.7.5/ggmlR/README.md | 25 ggmlR-0.7.5/ggmlR/cleanup | 2 ggmlR-0.7.5/ggmlR/cleanup.win | 2 ggmlR-0.7.5/ggmlR/inst/WORDLIST | 64 ggmlR-0.7.5/ggmlR/inst/doc/gpu-vulkan.html | 8 ggmlR-0.7.5/ggmlR/inst/doc/keras-like-api.html | 2 ggmlR-0.7.5/ggmlR/inst/doc/mlr3-integration.R | 42 ggmlR-0.7.5/ggmlR/inst/doc/mlr3-integration.Rmd | 65 ggmlR-0.7.5/ggmlR/inst/doc/mlr3-integration.html | 190 ggmlR-0.7.5/ggmlR/inst/examples/benchmark_onnx.R | 6 ggmlR-0.7.5/ggmlR/inst/examples/benchmark_ops.R |only ggmlR-0.7.5/ggmlR/inst/examples/debug_bat_resnext_diff.R |only ggmlR-0.7.5/ggmlR/inst/examples/debug_cast.R |only ggmlR-0.7.5/ggmlR/inst/examples/debug_cast_chain.R |only ggmlR-0.7.5/ggmlR/inst/examples/debug_convtranspose.R |only ggmlR-0.7.5/ggmlR/inst/examples/mlr3_integration.R | 7 ggmlR-0.7.5/ggmlR/inst/examples/profile_onnx_superres_gpu.R |only ggmlR-0.7.5/ggmlR/inst/examples/test_5d_cpy.R |only ggmlR-0.7.5/ggmlR/inst/examples/test_5d_ops.R |only ggmlR-0.7.5/ggmlR/inst/examples/test_bat_resnext_profile.R |only ggmlR-0.7.5/ggmlR/inst/examples/test_split_5d.R |only ggmlR-0.7.5/ggmlR/inst/examples/vulkan_caps.R | 27 ggmlR-0.7.5/ggmlR/inst/include/ggml-vulkan.h | 2 ggmlR-0.7.5/ggmlR/inst/include/ggml.h | 20 ggmlR-0.7.5/ggmlR/inst/include/r_ggml_compat.h | 14 ggmlR-0.7.5/ggmlR/man/GGML_TYPE_F32.Rd | 25 ggmlR-0.7.5/ggmlR/man/ggml_conv_2d_direct.Rd |only ggmlR-0.7.5/ggmlR/src/Makevars.in | 21 ggmlR-0.7.5/ggmlR/src/Makevars.win.in | 13 ggmlR-0.7.5/ggmlR/src/ggml-context.c |only ggmlR-0.7.5/ggmlR/src/ggml-core.c |only ggmlR-0.7.5/ggmlR/src/ggml-cpu/binary-ops.cpp | 21 ggmlR-0.7.5/ggmlR/src/ggml-cpu/ggml-cpu-backend.c | 13 ggmlR-0.7.5/ggmlR/src/ggml-cpu/ops-elemwise.cpp |only ggmlR-0.7.5/ggmlR/src/ggml-cpu/ops-misc.cpp |only ggmlR-0.7.5/ggmlR/src/ggml-cpu/ops-private.cpp |only ggmlR-0.7.5/ggmlR/src/ggml-cpu/ops-recurrent.cpp |only ggmlR-0.7.5/ggmlR/src/ggml-cpu/ops-rope-attn.cpp |only ggmlR-0.7.5/ggmlR/src/ggml-cpu/ops-ssm.cpp |only ggmlR-0.7.5/ggmlR/src/ggml-cpu/ops-tensor.cpp |only ggmlR-0.7.5/ggmlR/src/ggml-cpu/ops.cpp |10574 ------ ggmlR-0.7.5/ggmlR/src/ggml-cpu/ops.h | 2 ggmlR-0.7.5/ggmlR/src/ggml-cpu/unary-ops.cpp | 32 ggmlR-0.7.5/ggmlR/src/ggml-graph.c |only ggmlR-0.7.5/ggmlR/src/ggml-misc.c |only ggmlR-0.7.5/ggmlR/src/ggml-ops-builders.c |only ggmlR-0.7.5/ggmlR/src/ggml-private.c |only ggmlR-0.7.5/ggmlR/src/ggml-quants-helpers.h |only ggmlR-0.7.5/ggmlR/src/ggml-quants-iq.c |only ggmlR-0.7.5/ggmlR/src/ggml-quants-legacy.c |only ggmlR-0.7.5/ggmlR/src/ggml-quants-validate.c |only ggmlR-0.7.5/ggmlR/src/ggml-vulkan.h | 2 ggmlR-0.7.5/ggmlR/src/ggml-vulkan/ggml-vulkan-attn.cpp |only ggmlR-0.7.5/ggmlR/src/ggml-vulkan/ggml-vulkan-device.cpp |only ggmlR-0.7.5/ggmlR/src/ggml-vulkan/ggml-vulkan-elemwise.cpp |only ggmlR-0.7.5/ggmlR/src/ggml-vulkan/ggml-vulkan-graph.cpp |only ggmlR-0.7.5/ggmlR/src/ggml-vulkan/ggml-vulkan-matmul.cpp |only ggmlR-0.7.5/ggmlR/src/ggml-vulkan/ggml-vulkan-misc.cpp |only ggmlR-0.7.5/ggmlR/src/ggml-vulkan/ggml-vulkan-ops.cpp |only ggmlR-0.7.5/ggmlR/src/ggml-vulkan/ggml-vulkan-shaders.cpp |only ggmlR-0.7.5/ggmlR/src/ggml-vulkan/ggml-vulkan.cpp |15768 ---------- ggmlR-0.7.5/ggmlR/src/ggml-vulkan/vulkan-shaders/acc.comp | 8 ggmlR-0.7.5/ggmlR/src/ggml-vulkan/vulkan-shaders/add.comp | 8 ggmlR-0.7.5/ggmlR/src/ggml-vulkan/vulkan-shaders/add1.comp | 6 ggmlR-0.7.5/ggmlR/src/ggml-vulkan/vulkan-shaders/concat.comp | 33 ggmlR-0.7.5/ggmlR/src/ggml-vulkan/vulkan-shaders/copy_to_quant.comp | 10 ggmlR-0.7.5/ggmlR/src/ggml-vulkan/vulkan-shaders/copy_transpose.comp | 14 ggmlR-0.7.5/ggmlR/src/ggml-vulkan/vulkan-shaders/div.comp | 6 ggmlR-0.7.5/ggmlR/src/ggml-vulkan/vulkan-shaders/generic_binary_head.glsl | 35 ggmlR-0.7.5/ggmlR/src/ggml-vulkan/vulkan-shaders/generic_unary_head.glsl | 84 ggmlR-0.7.5/ggmlR/src/ggml-vulkan/vulkan-shaders/get_rows.comp | 14 ggmlR-0.7.5/ggmlR/src/ggml-vulkan/vulkan-shaders/get_rows_quant.comp | 14 ggmlR-0.7.5/ggmlR/src/ggml-vulkan/vulkan-shaders/mul.comp | 6 ggmlR-0.7.5/ggmlR/src/ggml-vulkan/vulkan-shaders/mul_mmq.comp | 15 ggmlR-0.7.5/ggmlR/src/ggml-vulkan/vulkan-shaders/mul_mmq_funcs.glsl | 77 ggmlR-0.7.5/ggmlR/src/ggml-vulkan/vulkan-shaders/rel_pos_bias.comp |only ggmlR-0.7.5/ggmlR/src/ggml-vulkan/vulkan-shaders/rms_norm.comp | 12 ggmlR-0.7.5/ggmlR/src/ggml-vulkan/vulkan-shaders/rms_norm_partials.comp | 12 ggmlR-0.7.5/ggmlR/src/ggml-vulkan/vulkan-shaders/solve_tri.comp | 14 ggmlR-0.7.5/ggmlR/src/ggml-vulkan/vulkan-shaders/sub.comp | 6 ggmlR-0.7.5/ggmlR/src/ggml-vulkan/vulkan-shaders/vulkan-shaders-gen.cpp | 8 ggmlR-0.7.5/ggmlR/src/ggml.c | 7792 ---- ggmlR-0.7.5/ggmlR/src/ggml.h | 20 ggmlR-0.7.5/ggmlR/src/onnx/onnx_ggml.c | 3236 -- ggmlR-0.7.5/ggmlR/src/onnx/onnx_ggml.h | 1 ggmlR-0.7.5/ggmlR/src/onnx/onnx_ops_basic.c |only ggmlR-0.7.5/ggmlR/src/onnx/onnx_ops_internal.h |only ggmlR-0.7.5/ggmlR/src/onnx/onnx_ops_nn.c |only ggmlR-0.7.5/ggmlR/src/onnx/onnx_ops_quant.c |only ggmlR-0.7.5/ggmlR/src/onnx/onnx_ops_special.c |only ggmlR-0.7.5/ggmlR/src/onnx/onnx_ops_tensor.c |only ggmlR-0.7.5/ggmlR/src/onnx/r_onnx.c | 25 ggmlR-0.7.5/ggmlR/src/onnx/rel_pos_bias.c | 17 ggmlR-0.7.5/ggmlR/src/onnx/rel_pos_bias.h | 3 ggmlR-0.7.5/ggmlR/src/r_ggml_compat.h | 14 ggmlR-0.7.5/ggmlR/src/r_ggml_io.c | 18 ggmlR-0.7.5/ggmlR/src/r_interface.c | 3 ggmlR-0.7.5/ggmlR/src/r_interface_graph.c | 28 ggmlR-0.7.5/ggmlR/src/r_interface_vulkan.c | 18 ggmlR-0.7.5/ggmlR/tests/testthat.R | 8 ggmlR-0.7.5/ggmlR/tests/testthat/Rplots.pdf |only ggmlR-0.7.5/ggmlR/tests/testthat/helper-onnx.R | 58 ggmlR-0.7.5/ggmlR/tests/testthat/setup.R |only ggmlR-0.7.5/ggmlR/tests/testthat/test-5d-ops.R |only ggmlR-0.7.5/ggmlR/tests/testthat/test-conv2d-cpu-gpu.R |only ggmlR-0.7.5/ggmlR/tests/testthat/test-onnx-boundary.R |only ggmlR-0.7.5/ggmlR/tests/testthat/test-onnx-chain-classify.R | 1 ggmlR-0.7.5/ggmlR/tests/testthat/test-onnx-edge.R |only ggmlR-0.7.5/ggmlR/tests/testthat/test-onnx-helpers.R |only ggmlR-0.7.5/ggmlR/tests/testthat/test-vulkan-caps.R | 28 ggmlR-0.7.5/ggmlR/tests/testthat/test-vulkan-push-constants.R |only ggmlR-0.7.5/ggmlR/tests/testthat/test-vulkan.R | 84 ggmlR-0.7.5/ggmlR/vignettes/mlr3-integration.Rmd | 65 122 files changed, 1301 insertions(+), 37725 deletions(-)
Title: Bayesian Model to Estimate Population Trends from Counts Series
Description: Infers the trends of one or several animal populations over time
from series of counts. It does so by accounting for count precision
(provided or inferred based on expert knowledge, e.g. guesstimates),
smoothing the population rate of increase over time, and accounting for the
maximum demographic potential of species. Inference is carried out in a
Bayesian framework. This work is part of the FRB-CESAB working group
AfroBioDrivers
<https://www.fondationbiodiversite.fr/en/the-frb-in-action/programs-and-projects/le-cesab/afrobiodrivers/>.
Author: Nicolas Casajus [aut, cre, cph] ,
Roger Pradel [aut]
Maintainer: Nicolas Casajus <nicolas.casajus@fondationbiodiversite.fr>
Diff between popbayes versions 1.2.0 dated 2023-06-15 and 1.3 dated 2026-04-20
popbayes-1.2.0/popbayes/man/figures/hexsticker.png |only popbayes-1.3/popbayes/DESCRIPTION | 16 +++--- popbayes-1.3/popbayes/MD5 | 28 +++++------ popbayes-1.3/popbayes/NEWS.md | 6 +- popbayes-1.3/popbayes/R/bugs-funs.R | 14 ++--- popbayes-1.3/popbayes/R/format-funs.R | 53 +++++++++++---------- popbayes-1.3/popbayes/R/series-funs.R | 43 +++++++++-------- popbayes-1.3/popbayes/README.md | 10 +-- popbayes-1.3/popbayes/build/vignette.rds |binary popbayes-1.3/popbayes/inst/CITATION | 4 - popbayes-1.3/popbayes/inst/doc/generate_data.R | 2 popbayes-1.3/popbayes/inst/doc/generate_data.html | 1 popbayes-1.3/popbayes/inst/doc/popbayes.R | 24 ++++----- popbayes-1.3/popbayes/inst/doc/popbayes.html | 11 ++-- popbayes-1.3/popbayes/man/figures/logo.png |only popbayes-1.3/popbayes/man/popbayes-package.Rd | 2 16 files changed, 115 insertions(+), 99 deletions(-)
Title: Thematic Maps
Description: Thematic maps are geographical maps in which spatial data
distributions are visualized. This package offers a flexible,
layer-based, and easy to use approach to create thematic maps, such as
choropleths and bubble maps.
Author: Martijn Tennekes [aut, cre],
Jakub Nowosad [ctb],
Joel Gombin [ctb],
Sebastian Jeworutzki [ctb],
Kent Russell [ctb],
Richard Zijdeman [ctb],
John Clouse [ctb],
Robin Lovelace [ctb],
Jannes Muenchow [ctb],
Olivier Roy [ctb],
Edzer Pebesma [ctb],
Hugh [...truncated...]
Maintainer: Martijn Tennekes <mtennekes@gmail.com>
Diff between tmap versions 4.2 dated 2025-09-10 and 4.3 dated 2026-04-20
tmap-4.2/tmap/man/tm_scale_bar.Rd |only tmap-4.3/tmap/DESCRIPTION | 8 tmap-4.3/tmap/MD5 | 167 +++++------ tmap-4.3/tmap/NAMESPACE | 6 tmap-4.3/tmap/NEWS.md | 9 tmap-4.3/tmap/R/global-variables.R | 3 tmap-4.3/tmap/R/misc_comp.R | 2 tmap-4.3/tmap/R/misc_crs.R | 33 ++ tmap-4.3/tmap/R/print.R | 2 tmap-4.3/tmap/R/process_breaks.R | 18 + tmap-4.3/tmap/R/process_meta.R | 28 + tmap-4.3/tmap/R/shapeTM.R | 2 tmap-4.3/tmap/R/spatial_non_supported.R | 4 tmap-4.3/tmap/R/spatial_raster.R | 4 tmap-4.3/tmap/R/spatial_sf.R | 21 - tmap-4.3/tmap/R/spatial_sp.R | 4 tmap-4.3/tmap/R/spatial_stars.R | 10 tmap-4.3/tmap/R/spatial_terra.R | 18 - tmap-4.3/tmap/R/step1_helper_facets.R | 44 ++- tmap-4.3/tmap/R/step1_rearrange.R | 39 +- tmap-4.3/tmap/R/step2_data.R | 59 +++- tmap-4.3/tmap/R/step2_helper_data.R | 99 +++++- tmap-4.3/tmap/R/step2_skipping.R |only tmap-4.3/tmap/R/step3_trans.R | 12 tmap-4.3/tmap/R/step4_plot.R | 83 +++-- tmap-4.3/tmap/R/tm_animate.R | 3 tmap-4.3/tmap/R/tm_component_functions.R | 12 tmap-4.3/tmap/R/tm_crs.R | 5 tmap-4.3/tmap/R/tm_facets.R | 4 tmap-4.3/tmap/R/tm_layers_lines.R | 31 ++ tmap-4.3/tmap/R/tm_layers_polygons.R | 22 + tmap-4.3/tmap/R/tm_layers_symbols.R | 11 tmap-4.3/tmap/R/tm_layers_text.R | 68 ++++ tmap-4.3/tmap/R/tm_layout.R | 9 tmap-4.3/tmap/R/tm_pos.R | 6 tmap-4.3/tmap/R/tm_shape.R | 22 + tmap-4.3/tmap/R/tmapGridAux_grid.R | 2 tmap-4.3/tmap/R/tmapGridAux_tiles.R | 16 - tmap-4.3/tmap/R/tmapGridComp.R | 23 + tmap-4.3/tmap/R/tmapGridComp_funs.R | 52 ++- tmap-4.3/tmap/R/tmapGridComp_leg_landscape.R | 9 tmap-4.3/tmap/R/tmapGridComp_leg_portrait.R | 13 tmap-4.3/tmap/R/tmapGridDataPlot.R | 4 tmap-4.3/tmap/R/tmapGridDataPlot_lines.R | 4 tmap-4.3/tmap/R/tmapGridDataPlot_polygons.R | 15 - tmap-4.3/tmap/R/tmapGridDataPlot_raster.R | 4 tmap-4.3/tmap/R/tmapGridDataPlot_symbols.R | 10 tmap-4.3/tmap/R/tmapGridDataPlot_text.R | 70 ++++ tmap-4.3/tmap/R/tmapLeaflet.R | 35 +- tmap-4.3/tmap/R/tmapLeafletComp.R | 9 tmap-4.3/tmap/R/tmapLeafletDataPlot_lines.R | 183 +++++++++++- tmap-4.3/tmap/R/tmapLeafletDataPlot_polygons.R | 30 +- tmap-4.3/tmap/R/tmapLeafletDataPlot_raster.R | 4 tmap-4.3/tmap/R/tmapLeafletDataPlot_symbols.R | 36 +- tmap-4.3/tmap/R/tmapLeafletDataPlot_text.R | 134 ++++++++- tmap-4.3/tmap/R/tmapLeafletInit.R | 45 +-- tmap-4.3/tmap/R/tmapLeafletRun.R | 21 + tmap-4.3/tmap/R/tmapLeaflet_layers.R | 37 ++ tmap-4.3/tmap/R/tmapScaleAsIs.R | 5 tmap-4.3/tmap/R/tmapScaleCategorical.R | 7 tmap-4.3/tmap/R/tmapScaleContinuous.R | 11 tmap-4.3/tmap/R/tmapShape.R | 18 + tmap-4.3/tmap/R/tmapTrans.R | 359 ++++++++++++------------- tmap-4.3/tmap/R/tmap_icons.R | 3 tmap-4.3/tmap/R/tmap_mode.R | 8 tmap-4.3/tmap/R/tmap_options_defaults.R | 11 tmap-4.3/tmap/R/tmap_save.R | 6 tmap-4.3/tmap/R/view_format_popups.R | 5 tmap-4.3/tmap/build/partial.rdb |binary tmap-4.3/tmap/man/tm_animate.Rd | 6 tmap-4.3/tmap/man/tm_facets.Rd | 286 ++++++++++--------- tmap-4.3/tmap/man/tm_lines.Rd | 48 +++ tmap-4.3/tmap/man/tm_logo.Rd | 4 tmap-4.3/tmap/man/tm_polygons.Rd | 18 + tmap-4.3/tmap/man/tm_raster.Rd | 18 + tmap-4.3/tmap/man/tm_sf.Rd | 18 + tmap-4.3/tmap/man/tm_shape.Rd | 24 + tmap-4.3/tmap/man/tm_symbols.Rd | 8 tmap-4.3/tmap/man/tm_text.Rd | 66 ++++ tmap-4.3/tmap/man/tmapGetShapeMeta1.Rd | 4 tmap-4.3/tmap/man/tmapGridLeaflet.Rd | 41 ++ tmap-4.3/tmap/man/tmapReproject.Rd |only tmap-4.3/tmap/man/tmapShape.Rd | 14 tmap-4.3/tmap/man/tmap_last.Rd | 38 +- tmap-4.3/tmap/man/tmap_mode.Rd | 4 tmap-4.3/tmap/man/tmap_save.Rd | 20 - 86 files changed, 1879 insertions(+), 795 deletions(-)
Title: Additional Themes, Theme Components and Utilities for 'ggplot2'
Description: A compilation of extra 'ggplot2' themes, scales and utilities, including a
spell check function for plot label fields and an overall emphasis on typography.
A copy of the 'Google' font 'Roboto Condensed' is also included.
Author: Bob Rudis [aut, cre] ,
Patrick Kennedy [ctb],
Philipp Reiner [ctb],
Dan Wilson [ctb] ,
Xavier Adam [ctb],
Google [cph] ,
IBM [cph] ,
Goldman Sachs [cph] ,
Impallari Type [cph] ,
Jacob Barnett [ctb],
Thomas J. Leeper [ctb] ,
Joris Meys [ctb],
Steph An [...truncated...]
Maintainer: Bob Rudis <bob@rud.is>
This is a re-admission after prior archival of version 0.8.7 dated 2024-03-03
Diff between hrbrthemes versions 0.8.7 dated 2024-03-03 and 0.9.3 dated 2026-04-20
hrbrthemes-0.8.7/hrbrthemes/tests/testthat/_snaps |only hrbrthemes-0.9.3/hrbrthemes/DESCRIPTION | 34 +-- hrbrthemes-0.9.3/hrbrthemes/MD5 | 105 ++++++---- hrbrthemes-0.9.3/hrbrthemes/NAMESPACE | 33 ++- hrbrthemes-0.9.3/hrbrthemes/R/bit12.R |only hrbrthemes-0.9.3/hrbrthemes/R/check.r | 6 hrbrthemes-0.9.3/hrbrthemes/R/econ-sans.R | 2 hrbrthemes-0.9.3/hrbrthemes/R/flexoki.R |only hrbrthemes-0.9.3/hrbrthemes/R/ft.R | 49 ++-- hrbrthemes-0.9.3/hrbrthemes/R/goldmansans.R | 2 hrbrthemes-0.9.3/hrbrthemes/R/hrbrthemes-package.R | 3 hrbrthemes-0.9.3/hrbrthemes/R/inter.R | 2 hrbrthemes-0.9.3/hrbrthemes/R/plexsans.R | 2 hrbrthemes-0.9.3/hrbrthemes/R/public-sans.R | 2 hrbrthemes-0.9.3/hrbrthemes/R/roboto-condensed.r | 2 hrbrthemes-0.9.3/hrbrthemes/R/scales.r | 2 hrbrthemes-0.9.3/hrbrthemes/R/theme-ipsum.r | 2 hrbrthemes-0.9.3/hrbrthemes/R/utils-colors.R |only hrbrthemes-0.9.3/hrbrthemes/man/bit12.Rd |only hrbrthemes-0.9.3/hrbrthemes/man/bit12_extended.Rd |only hrbrthemes-0.9.3/hrbrthemes/man/bit12_scale.Rd |only hrbrthemes-0.9.3/hrbrthemes/man/create_continuous_scale.Rd |only hrbrthemes-0.9.3/hrbrthemes/man/figures/README-an-1.png |binary hrbrthemes-0.9.3/hrbrthemes/man/figures/README-ax1-1.png |binary hrbrthemes-0.9.3/hrbrthemes/man/figures/README-ax2-1.png |binary hrbrthemes-0.9.3/hrbrthemes/man/figures/README-ax3-1.png |binary hrbrthemes-0.9.3/hrbrthemes/man/figures/README-bit12-01-1.png |only hrbrthemes-0.9.3/hrbrthemes/man/figures/README-bit12-02-1.png |only hrbrthemes-0.9.3/hrbrthemes/man/figures/README-flexoki-03-1.png |only hrbrthemes-0.9.3/hrbrthemes/man/figures/README-flexoki1-1.png |only hrbrthemes-0.9.3/hrbrthemes/man/figures/README-flexoki2-1.png |only hrbrthemes-0.9.3/hrbrthemes/man/figures/README-flexoki3-1.png |only hrbrthemes-0.9.3/hrbrthemes/man/figures/README-ft-1.png |binary hrbrthemes-0.9.3/hrbrthemes/man/figures/README-ps-1.png |binary hrbrthemes-0.9.3/hrbrthemes/man/figures/README-rc-1.png |binary hrbrthemes-0.9.3/hrbrthemes/man/figures/README-sc-1.png |binary hrbrthemes-0.9.3/hrbrthemes/man/figures/README-sp-1.png |binary hrbrthemes-0.9.3/hrbrthemes/man/flexoki.Rd |only hrbrthemes-0.9.3/hrbrthemes/man/flexoki_dark.Rd |only hrbrthemes-0.9.3/hrbrthemes/man/flexoki_extended.Rd |only hrbrthemes-0.9.3/hrbrthemes/man/flexoki_light.Rd |only hrbrthemes-0.9.3/hrbrthemes/man/hrbrthemes.Rd | 2 hrbrthemes-0.9.3/hrbrthemes/man/scale_color_flexoki_continuous.Rd |only hrbrthemes-0.9.3/hrbrthemes/man/scale_color_flexoki_dark.Rd |only hrbrthemes-0.9.3/hrbrthemes/man/scale_color_flexoki_dark_distiller.Rd |only hrbrthemes-0.9.3/hrbrthemes/man/scale_color_flexoki_dark_spectrum.Rd |only hrbrthemes-0.9.3/hrbrthemes/man/scale_color_flexoki_light.Rd |only hrbrthemes-0.9.3/hrbrthemes/man/scale_color_flexoki_light_distiller.Rd |only hrbrthemes-0.9.3/hrbrthemes/man/scale_color_flexoki_light_spectrum.Rd |only hrbrthemes-0.9.3/hrbrthemes/man/scale_fill_flexoki_continuous.Rd |only hrbrthemes-0.9.3/hrbrthemes/man/scale_fill_flexoki_dark.Rd |only hrbrthemes-0.9.3/hrbrthemes/man/scale_fill_flexoki_dark_distiller.Rd |only hrbrthemes-0.9.3/hrbrthemes/man/scale_fill_flexoki_dark_spectrum.Rd |only hrbrthemes-0.9.3/hrbrthemes/man/scale_fill_flexoki_light.Rd |only hrbrthemes-0.9.3/hrbrthemes/man/scale_fill_flexoki_light_distiller.Rd |only hrbrthemes-0.9.3/hrbrthemes/man/scale_fill_flexoki_light_spectrum.Rd |only hrbrthemes-0.9.3/hrbrthemes/man/scale_ft.Rd | 20 + hrbrthemes-0.9.3/hrbrthemes/man/scale_ipsum.Rd | 20 + hrbrthemes-0.9.3/hrbrthemes/man/scale_x_percent.Rd | 6 hrbrthemes-0.9.3/hrbrthemes/man/theme_ipsum.Rd | 2 hrbrthemes-0.9.3/hrbrthemes/man/theme_ipsum_es.Rd | 2 hrbrthemes-0.9.3/hrbrthemes/man/theme_ipsum_gs.Rd | 2 hrbrthemes-0.9.3/hrbrthemes/man/theme_ipsum_inter.Rd | 2 hrbrthemes-0.9.3/hrbrthemes/man/theme_ipsum_ps.Rd | 2 hrbrthemes-0.9.3/hrbrthemes/man/theme_ipsum_pub.Rd | 2 hrbrthemes-0.9.3/hrbrthemes/man/theme_ipsum_rc.Rd | 2 hrbrthemes-0.9.3/hrbrthemes/man/update_geom_font_defaults.Rd | 2 hrbrthemes-0.9.3/hrbrthemes/man/validate_direction.Rd |only hrbrthemes-0.9.3/hrbrthemes/man/validate_palette.Rd |only hrbrthemes-0.9.3/hrbrthemes/tests/testthat/fontconfig-helper.R | 5 70 files changed, 205 insertions(+), 110 deletions(-)
Title: German Election Database (GERDA)
Description: Provides tools to download datasets of German elections
covering local, state, federal, mayoral, European Parliament, and county
(Kreistag) elections, with federal county-level coverage from 1953 and
other families extending through 2025. The package supplies turnout, vote
shares, and derived indicators at the municipal and county level, including
geographically harmonized datasets that account for changes in municipal
boundaries over time and incorporate mail-in voting districts. Bundled data
includes county-level INKAR covariates (1995-2022) and municipality-level
Zensus 2022 indicators. Data is sourced from
<https://github.com/awiedem/german_election_data>.
Author: Hanno Hilbig [aut, cre]
Maintainer: Hanno Hilbig <hhilbig@ucdavis.edu>
Diff between gerda versions 0.5.0 dated 2026-01-31 and 0.6.0 dated 2026-04-20
gerda-0.5.0/gerda/tests/testthat/test-load_gerda_web.R |only gerda-0.6.0/gerda/DESCRIPTION | 29 gerda-0.6.0/gerda/MD5 | 40 - gerda-0.6.0/gerda/NEWS.md | 43 + gerda-0.6.0/gerda/R/gerda_covariates.R | 12 gerda-0.6.0/gerda/R/gerda_data_list.R | 38 + gerda-0.6.0/gerda/R/load_gerda_web.R | 322 +++++++--- gerda-0.6.0/gerda/R/party_crosswalk.R | 24 gerda-0.6.0/gerda/README.md | 152 +--- gerda-0.6.0/gerda/inst/doc/gerda.Rmd | 25 gerda-0.6.0/gerda/inst/doc/gerda.html | 223 +++++- gerda-0.6.0/gerda/man/add_gerda_covariates.Rd | 6 gerda-0.6.0/gerda/man/gerda_covariates.Rd | 6 gerda-0.6.0/gerda/man/load_gerda_web.Rd | 22 gerda-0.6.0/gerda/man/party_crosswalk.Rd | 17 gerda-0.6.0/gerda/tests/testthat/test-gerda_data_list.R | 6 gerda-0.6.0/gerda/tests/testthat/test-integration.R | 22 gerda-0.6.0/gerda/tests/testthat/test-load_gerda_web-catalog.R |only gerda-0.6.0/gerda/tests/testthat/test-load_gerda_web-extensions.R |only gerda-0.6.0/gerda/tests/testthat/test-load_gerda_web-fuzzy.R |only gerda-0.6.0/gerda/tests/testthat/test-load_gerda_web-schema.R |only gerda-0.6.0/gerda/tests/testthat/test-load_gerda_web-validation.R |only gerda-0.6.0/gerda/tests/testthat/test-party_crosswalk.R | 20 gerda-0.6.0/gerda/vignettes/gerda.Rmd | 25 24 files changed, 728 insertions(+), 304 deletions(-)
Title: Data Quality Assessment Tools
Description: In the context of data quality assessment, this package provides a number of functions for evaluating data quality across various dimensions, including completeness, plausibility, concordance, conformance, currency, timeliness, and correctness. It has been developed based on two well-known frameworks—Michael G. Kahn (2016) <doi:10.13063/2327-9214.1244> and Nicole G. Weiskopf (2017) <doi:10.5334/egems.218>—for data quality assessment. Using this package, users can evaluate the quality of their datasets, provided that corresponding metadata are available.
Author: Hamed Tabesh [aut],
Elham Hosseinzadeh [aut, cre],
Marziyeh Afkanpour [aut]
Maintainer: Elham Hosseinzadeh <elham.hh2012@gmail.com>
Diff between DQA versions 0.1.0 dated 2025-12-18 and 0.1.1 dated 2026-04-20
DESCRIPTION | 13 +++++++------ MD5 | 10 +++++----- NEWS.md | 9 +++++++++ R/check-missing.R | 6 +++--- inst/extdata/rule_definitions.R | 25 ++++++++++++++++++++++--- man/check_missing_itemwise.Rd | 2 +- 6 files changed, 47 insertions(+), 18 deletions(-)
Title: Geometric Single Cell Deconvolution
Description: Deconvolution of bulk RNA-Sequencing data into proportions of cells based on a reference single-cell RNA-Sequencing dataset using high-dimensional geometric methodology <doi:10.64898/2026.01.24.701240>.
Author: Myles Lewis [aut, cre] ,
Rachel Lau [ctb]
Maintainer: Myles Lewis <myles.lewis@qmul.ac.uk>
Diff between cellGeometry versions 0.6.2 dated 2026-03-19 and 0.6.3 dated 2026-04-19
cellGeometry-0.6.2/cellGeometry/inst/doc/intro.R |only cellGeometry-0.6.2/cellGeometry/inst/doc/intro.Rmd |only cellGeometry-0.6.2/cellGeometry/inst/doc/intro.html |only cellGeometry-0.6.2/cellGeometry/vignettes/intro.Rmd |only cellGeometry-0.6.3/cellGeometry/DESCRIPTION | 12 - cellGeometry-0.6.3/cellGeometry/MD5 | 50 +++-- cellGeometry-0.6.3/cellGeometry/NAMESPACE | 10 + cellGeometry-0.6.3/cellGeometry/NEWS.md | 11 + cellGeometry-0.6.3/cellGeometry/R/cos_similarity.R | 20 ++ cellGeometry-0.6.3/cellGeometry/R/cv_deconv.R |only cellGeometry-0.6.3/cellGeometry/R/deconvolute.R | 143 ++++++++++------ cellGeometry-0.6.3/cellGeometry/R/plot_comp.R | 124 ++++++++----- cellGeometry-0.6.3/cellGeometry/R/rstudent.R | 59 ++++++ cellGeometry-0.6.3/cellGeometry/R/scedasticity.R | 52 ++++- cellGeometry-0.6.3/cellGeometry/R/signature_heatmap.R | 2 cellGeometry-0.6.3/cellGeometry/R/simulate_bulk.R | 23 +- cellGeometry-0.6.3/cellGeometry/R/stack_plot.R | 1 cellGeometry-0.6.3/cellGeometry/R/tune_deconv.R | 5 cellGeometry-0.6.3/cellGeometry/README.md | 2 cellGeometry-0.6.3/cellGeometry/build/vignette.rds |binary cellGeometry-0.6.3/cellGeometry/inst/doc/Intro.R |only cellGeometry-0.6.3/cellGeometry/inst/doc/Intro.Rmd |only cellGeometry-0.6.3/cellGeometry/inst/doc/Intro.html |only cellGeometry-0.6.3/cellGeometry/man/confint.deconv.Rd |only cellGeometry-0.6.3/cellGeometry/man/deconvolute.Rd | 36 +++- cellGeometry-0.6.3/cellGeometry/man/max_similarity.Rd |only cellGeometry-0.6.3/cellGeometry/man/plot_comp.Rd | 13 + cellGeometry-0.6.3/cellGeometry/man/plot_cv.Rd |only cellGeometry-0.6.3/cellGeometry/man/plot_pred.Rd | 12 + cellGeometry-0.6.3/cellGeometry/man/plot_residuals.Rd | 15 + cellGeometry-0.6.3/cellGeometry/man/residuals.deconv.Rd | 5 cellGeometry-0.6.3/cellGeometry/vignettes/Intro.Rmd |only 32 files changed, 416 insertions(+), 179 deletions(-)
Title: Manage Spatial Metadata for Known Locations
Description: Utility functions for discovering and managing metadata
associated with spatially unique "known locations". Applications include
all fields of environmental monitoring (e.g. air and water quality) where
data are collected at stationary sites.
Author: Jonathan Callahan [aut, cre],
Eli Grosman [ctb],
Oliver Fogelin [ctb]
Maintainer: Jonathan Callahan <jonathan.s.callahan@gmail.com>
Diff between MazamaLocationUtils versions 0.4.4 dated 2024-08-19 and 0.4.5 dated 2026-04-19
MazamaLocationUtils-0.4.4/MazamaLocationUtils/R/MazamaLocationUtils.R |only MazamaLocationUtils-0.4.4/MazamaLocationUtils/man/figures |only MazamaLocationUtils-0.4.5/MazamaLocationUtils/DESCRIPTION | 17 - MazamaLocationUtils-0.4.5/MazamaLocationUtils/MD5 | 144 ++++------ MazamaLocationUtils-0.4.5/MazamaLocationUtils/NEWS.md | 9 MazamaLocationUtils-0.4.5/MazamaLocationUtils/R/MazamaLocationUtils-package.R |only MazamaLocationUtils-0.4.5/MazamaLocationUtils/R/clusterByDistance.R | 18 - MazamaLocationUtils-0.4.5/MazamaLocationUtils/R/data.R | 20 - MazamaLocationUtils-0.4.5/MazamaLocationUtils/R/location_createID.R | 14 MazamaLocationUtils-0.4.5/MazamaLocationUtils/R/location_getCensusBlock.R | 8 MazamaLocationUtils-0.4.5/MazamaLocationUtils/R/location_getSingleAddress_Photon.R | 24 - MazamaLocationUtils-0.4.5/MazamaLocationUtils/R/location_getSingleAddress_TexasAM.R | 2 MazamaLocationUtils-0.4.5/MazamaLocationUtils/R/location_getSingleElevation_USGS.R | 2 MazamaLocationUtils-0.4.5/MazamaLocationUtils/R/location_initialize.R | 2 MazamaLocationUtils-0.4.5/MazamaLocationUtils/R/table_addClustering.R | 20 - MazamaLocationUtils-0.4.5/MazamaLocationUtils/R/table_addColumn.R | 12 MazamaLocationUtils-0.4.5/MazamaLocationUtils/R/table_addCoreMetadata.R | 8 MazamaLocationUtils-0.4.5/MazamaLocationUtils/R/table_addLocation.R | 16 - MazamaLocationUtils-0.4.5/MazamaLocationUtils/R/table_addOpenCageInfo.R | 12 MazamaLocationUtils-0.4.5/MazamaLocationUtils/R/table_addSingleLocation.R | 14 MazamaLocationUtils-0.4.5/MazamaLocationUtils/R/table_filterByDistance.R | 6 MazamaLocationUtils-0.4.5/MazamaLocationUtils/R/table_findAdjacentDistances.R | 14 MazamaLocationUtils-0.4.5/MazamaLocationUtils/R/table_findAdjacentLocations.R | 14 MazamaLocationUtils-0.4.5/MazamaLocationUtils/R/table_getDistanceFromTarget.R | 6 MazamaLocationUtils-0.4.5/MazamaLocationUtils/R/table_getLocationID.R | 18 - MazamaLocationUtils-0.4.5/MazamaLocationUtils/R/table_getNearestDistance.R | 18 - MazamaLocationUtils-0.4.5/MazamaLocationUtils/R/table_getNearestLocation.R | 8 MazamaLocationUtils-0.4.5/MazamaLocationUtils/R/table_getRecordIndex.R | 8 MazamaLocationUtils-0.4.5/MazamaLocationUtils/R/table_initializeExisting.R | 16 - MazamaLocationUtils-0.4.5/MazamaLocationUtils/R/table_leaflet.R | 54 +-- MazamaLocationUtils-0.4.5/MazamaLocationUtils/R/table_leafletAdd.R | 5 MazamaLocationUtils-0.4.5/MazamaLocationUtils/R/table_load.R | 8 MazamaLocationUtils-0.4.5/MazamaLocationUtils/R/table_removeColumn.R | 6 MazamaLocationUtils-0.4.5/MazamaLocationUtils/R/table_removeRecord.R | 12 MazamaLocationUtils-0.4.5/MazamaLocationUtils/R/table_save.R | 4 MazamaLocationUtils-0.4.5/MazamaLocationUtils/R/table_updateColumn.R | 20 - MazamaLocationUtils-0.4.5/MazamaLocationUtils/R/table_updateSingleRecord.R | 16 - MazamaLocationUtils-0.4.5/MazamaLocationUtils/R/utils-APIKey.R | 10 MazamaLocationUtils-0.4.5/MazamaLocationUtils/R/utils.R | 12 MazamaLocationUtils-0.4.5/MazamaLocationUtils/README.md | 6 MazamaLocationUtils-0.4.5/MazamaLocationUtils/inst/doc/MazamaLocationUtils.html | 6 MazamaLocationUtils-0.4.5/MazamaLocationUtils/man/LocationDataDir.Rd | 6 MazamaLocationUtils-0.4.5/MazamaLocationUtils/man/MazamaLocationUtils.Rd | 25 + MazamaLocationUtils-0.4.5/MazamaLocationUtils/man/clusterByDistance.Rd | 6 MazamaLocationUtils-0.4.5/MazamaLocationUtils/man/coreMetadataNames.Rd | 12 MazamaLocationUtils-0.4.5/MazamaLocationUtils/man/getLocationDataDir.Rd | 6 MazamaLocationUtils-0.4.5/MazamaLocationUtils/man/id_monitors_500.Rd | 4 MazamaLocationUtils-0.4.5/MazamaLocationUtils/man/location_createID.Rd | 2 MazamaLocationUtils-0.4.5/MazamaLocationUtils/man/location_getSingleElevation_USGS.Rd | 2 MazamaLocationUtils-0.4.5/MazamaLocationUtils/man/location_initialize.Rd | 2 MazamaLocationUtils-0.4.5/MazamaLocationUtils/man/or_monitors_500.Rd | 4 MazamaLocationUtils-0.4.5/MazamaLocationUtils/man/setLocationDataDir.Rd | 6 MazamaLocationUtils-0.4.5/MazamaLocationUtils/man/table_addClustering.Rd | 6 MazamaLocationUtils-0.4.5/MazamaLocationUtils/man/table_addColumn.Rd | 4 MazamaLocationUtils-0.4.5/MazamaLocationUtils/man/table_addCoreMetadata.Rd | 2 MazamaLocationUtils-0.4.5/MazamaLocationUtils/man/table_addLocation.Rd | 6 MazamaLocationUtils-0.4.5/MazamaLocationUtils/man/table_addSingleLocation.Rd | 6 MazamaLocationUtils-0.4.5/MazamaLocationUtils/man/table_findAdjacentDistances.Rd | 2 MazamaLocationUtils-0.4.5/MazamaLocationUtils/man/table_findAdjacentLocations.Rd | 2 MazamaLocationUtils-0.4.5/MazamaLocationUtils/man/table_getLocationID.Rd | 2 MazamaLocationUtils-0.4.5/MazamaLocationUtils/man/table_getNearestDistance.Rd | 2 MazamaLocationUtils-0.4.5/MazamaLocationUtils/man/table_initializeExisting.Rd | 2 MazamaLocationUtils-0.4.5/MazamaLocationUtils/man/table_leaflet.Rd | 41 +- MazamaLocationUtils-0.4.5/MazamaLocationUtils/man/table_load.Rd | 8 MazamaLocationUtils-0.4.5/MazamaLocationUtils/man/table_removeColumn.Rd | 4 MazamaLocationUtils-0.4.5/MazamaLocationUtils/man/table_removeRecord.Rd | 6 MazamaLocationUtils-0.4.5/MazamaLocationUtils/man/table_updateColumn.Rd | 4 MazamaLocationUtils-0.4.5/MazamaLocationUtils/man/table_updateSingleRecord.Rd | 6 MazamaLocationUtils-0.4.5/MazamaLocationUtils/man/validateLonLat.Rd | 2 MazamaLocationUtils-0.4.5/MazamaLocationUtils/man/validateLonsLats.Rd | 2 MazamaLocationUtils-0.4.5/MazamaLocationUtils/man/wa_monitors_500.Rd | 4 71 files changed, 404 insertions(+), 391 deletions(-)
More information about MazamaLocationUtils at CRAN
Permanent link
Title: Bindings for 'Open Source Routing Machine'
Description: Install and control 'Open Source Routing Machine' ('OSRM')
backend executables to prepare routing data and run/stop a local
'OSRM' server. For computations with the running server use the 'osrm'
R package (<https://cran.r-project.org/package=osrm>).
Author: Egor Kotov [aut, cre, cph]
Maintainer: Egor Kotov <kotov.egor@gmail.com>
Diff between osrm.backend versions 0.2.0 dated 2026-02-06 and 0.3.0 dated 2026-04-19
DESCRIPTION | 11 MD5 | 100 ++-- NAMESPACE | 4 NEWS.md | 22 + R/osrm.backend-package.R |only R/osrm_cleanup.R | 19 R/osrm_contract.R | 3 R/osrm_customize.R | 3 R/osrm_extract.R | 37 + R/osrm_find_profile.R | 12 R/osrm_gui.R |only R/osrm_gui_internals.R |only R/osrm_install.R | 134 ++++-- R/osrm_partition.R | 3 R/osrm_prepare_graph.R | 23 - R/osrm_server_registry.R | 216 +++++++++- R/osrm_start.R | 235 ++++++----- R/osrm_start_server.R | 80 +++ R/osrm_stop_server.R | 587 +++++++++++++++++++++------- R/osrm_uninstall.R | 3 R/osrm_which.R | 3 R/pbf_header_reader.R |only R/utils.R | 78 +++ README.md | 13 build/vignette.rds |binary man/dot-get_pbf_extent.Rd |only man/figures/lifecycle-deprecated.svg |only man/figures/lifecycle-experimental.svg |only man/figures/lifecycle-stable.svg |only man/figures/lifecycle-superseded.svg |only man/osrm.backend-package.Rd |only man/osrm_check_available_versions.Rd | 2 man/osrm_check_latest_version.Rd | 4 man/osrm_cleanup.Rd | 2 man/osrm_contract.Rd | 2 man/osrm_customize.Rd | 2 man/osrm_extract.Rd | 2 man/osrm_find_profile.Rd | 11 man/osrm_get_server_profile.Rd |only man/osrm_gui.Rd |only man/osrm_install.Rd | 80 ++- man/osrm_partition.Rd | 2 man/osrm_prepare_graph.Rd | 4 man/osrm_servers.Rd | 30 + man/osrm_start.Rd | 13 man/osrm_start_server.Rd | 18 man/osrm_stop.Rd | 30 + man/osrm_stop_all.Rd | 10 man/osrm_uninstall.Rd | 2 man/osrm_which.Rd | 2 man/read_pbf_header_bbox.Rd |only tests/testthat/test-live-integration.R |only tests/testthat/test-osrm_gui.R |only tests/testthat/test-osrm_install.R | 1 tests/testthat/test-osrm_server.R | 315 +++++++++++---- tests/testthat/test-osrm_server_additions.R |only tests/testthat/test-osrm_server_class.R |only tests/testthat/test-osrm_start.R | 94 ++-- tests/testthat/test-pbf_header_reader.R |only tests/testthat/test-pipeline-conflicts.R | 6 60 files changed, 1687 insertions(+), 531 deletions(-)
Title: Dominance Analysis Methods
Description: Dominance analysis relative importance methods that are intended
for predictive models.
Author: Joseph Luchman [aut, cre]
Maintainer: Joseph Luchman <jluchman@gmail.com>
Diff between domir versions 1.2.0 dated 2024-05-04 and 1.3.0 dated 2026-04-19
domir-1.2.0/domir/man/dominance_scalar.Rd |only domir-1.2.0/domir/man/formula_parse.Rd |only domir-1.3.0/domir/DESCRIPTION | 25 domir-1.3.0/domir/MD5 | 41 domir-1.3.0/domir/NAMESPACE | 2 domir-1.3.0/domir/NEWS.md | 14 domir-1.3.0/domir/R/dominance_internals.r | 805 ++++++-- domir-1.3.0/domir/R/domir-package.r | 34 domir-1.3.0/domir/R/domir.r | 1766 +++++++++---------- domir-1.3.0/domir/R/formula_list.R | 76 domir-1.3.0/domir/README.md | 71 domir-1.3.0/domir/build/vignette.rds |binary domir-1.3.0/domir/inst/doc/domir_basics.Rmd | 6 domir-1.3.0/domir/inst/doc/domir_basics.html | 54 domir-1.3.0/domir/man/domir-package.Rd | 30 domir-1.3.0/domir/man/domir.Rd | 301 +-- domir-1.3.0/domir/man/fmllst2Fml.Rd | 6 domir-1.3.0/domir/man/formula_list.Rd | 2 domir-1.3.0/domir/man/print.domir.Rd | 17 domir-1.3.0/domir/man/summary.domir.Rd | 4 domir-1.3.0/domir/tests/testthat/test-Features.r | 22 domir-1.3.0/domir/tests/testthat/test-Within_Group.r |only domir-1.3.0/domir/vignettes/domir_basics.Rmd | 6 23 files changed, 1783 insertions(+), 1499 deletions(-)
Title: Nearest Neighbor Observation Imputation and Evaluation Tools
Description: Performs nearest neighbor-based imputation using one or more alternative
approaches to processing multivariate data. These include methods based on canonical
correlation: analysis, canonical correspondence analysis, and a multivariate adaptation
of the random forest classification and regression techniques of Leo Breiman and Adele
Cutler. Additional methods are also offered. The package includes functions for
comparing the results from running alternative techniques, detecting imputation targets
that are notably distant from reference observations, detecting and correcting
for bias, bootstrapping and building ensemble imputations, and mapping results.
Author: Jeffrey S. Evans [aut, cre] ,
Nicholas L. Crookston [aut],
Andrew O. Finley [aut],
John Coulston [ctb, com]
Maintainer: Jeffrey S. Evans <sage_insights@outlook.com>
Diff between yaImpute versions 1.0-34.1 dated 2024-09-21 and 1.0-36 dated 2026-04-19
DESCRIPTION | 19 MD5 | 57 - NEWS |only R/newtargets.R | 553 +++++++------- R/notablydistant.R | 1 R/yai.R | 1781 +++++++++++++++++++++++----------------------- build/partial.rdb |binary data/MoscowMtStJoe.RData |binary data/TallyLake.RData |binary inst/CITATION | 33 man/correctbias.Rd | 2 man/figures/logo.png |binary man/impute.yai.Rd | 2 man/newtargets.Rd | 3 man/notablydifferent.Rd | 2 man/rmsd.yai.Rd | 2 man/varSelection.Rd | 4 man/vars.Rd | 4 man/whatsMax.Rd | 2 man/yai.Rd | 6 src/ANN.cpp | 8 src/annImpute.cpp | 3 src/bd_tree.cpp | 12 src/kd_dump.cpp | 2 src/kd_fix_rad_search.cpp | 2 src/kd_pr_search.cpp | 2 src/kd_search.cpp | 2 src/kd_split.cpp | 72 - src/kd_util.cpp | 18 src/util.cpp | 4 30 files changed, 1305 insertions(+), 1291 deletions(-)
Title: Model-Independent Variable Selection via the Rule-Based Variable
Priority
Description: A new framework of variable selection, which instead of generating artificial covariates such as permutation importance and knockoffs, creates release rules to examine the affect on the response for each covariate where the conditional distribution of the response variable can be arbitrary and unknown.
Author: Min Lu [aut],
Aster K. Shear [aut],
Udaya B. Kogalur [aut, cre],
Hemant Ishwaran [aut]
Maintainer: Udaya B. Kogalur <ubk@kogalur.com>
Diff between varPro versions 3.0.0 dated 2026-04-08 and 3.1.0 dated 2026-04-19
varPro-3.0.0/varPro/man/importance.varpro.Rd |only varPro-3.0.0/varPro/man/partial.ivarpro.Rd |only varPro-3.1.0/varPro/DESCRIPTION | 8 varPro-3.1.0/varPro/MD5 | 28 +- varPro-3.1.0/varPro/NAMESPACE | 20 - varPro-3.1.0/varPro/NEWS.md | 27 ++ varPro-3.1.0/varPro/R/importance.varpro.R | 114 +++++++++- varPro-3.1.0/varPro/R/utilities_ivarpro.R | 64 ++--- varPro-3.1.0/varPro/data/alzheimers.rda |binary varPro-3.1.0/varPro/data/glioma.rda |binary varPro-3.1.0/varPro/data/hrrecov.rda |binary varPro-3.1.0/varPro/man/hrrecov.Rd | 4 varPro-3.1.0/varPro/man/importance.Rd |only varPro-3.1.0/varPro/man/ivarpro.Rd | 28 +- varPro-3.1.0/varPro/man/plot.ivarpro.Rd |only varPro-3.1.0/varPro/man/plot.partialpro.Rd | 305 ++++++++++++++------------- varPro-3.1.0/varPro/man/predict.ivarpro.Rd | 47 ++-- 17 files changed, 401 insertions(+), 244 deletions(-)
Title: Fit Neutral Community Model to Microbiome or Ecological Data
Description: Provides tools for fitting the neutral community model (NCM) to
assess the role of stochastic processes in community assembly. The package
implements the framework of Sloan et al. (2006) <doi:10.1111/j.1462-2920.2005.00956.x>,
enabling users to evaluate neutral dynamics in ecological and microbial communities.
Author: Yuxuan He [aut, cre, cph]
Maintainer: Yuxuan He <heyuxuan0525@outlook.com>
Diff between ncmR versions 0.1.0 dated 2026-04-10 and 0.2.0 dated 2026-04-19
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++++---- NAMESPACE | 7 +++++++ NEWS.md | 8 ++++++++ R/plot.R |only README.md | 8 ++++++++ man/ggsave_unicode.Rd |only man/print.unicode_ggplot.Rd |only man/scatter_plot.Rd |only 9 files changed, 35 insertions(+), 8 deletions(-)
Title: Spatial Graph-Theoretic Genetic Gravity Modelling
Description: Implementation of spatial graph-theoretic genetic gravity models.
The model framework is applicable for other types of spatial flow questions.
Includes functions for constructing spatial graphs, sampling and summarizing
associated raster variables and building unconstrained and singly constrained
gravity models.
Author: Jeffrey S. Evans [aut, cre],
Melanie Murphy [aut]
Maintainer: Jeffrey S. Evans <sage_insights@outlook.com>
Diff between GeNetIt versions 0.1-6 dated 2023-06-14 and 0.1-7 dated 2026-04-19
DESCRIPTION | 14 +++++++------- MD5 | 4 ++-- inst/CITATION | 2 +- 3 files changed, 10 insertions(+), 10 deletions(-)
Title: Meta-Package for Compositional Data Analysis
Description: Meta-package for compositional data analysis. It attaches the
main stable packages of the 'coda' ecosystem, currently 'coda.base' and
'coda.plot', and provides helper tools to install development extensions
from 'GitHub'.
Author: Marc Comas-Cufi [aut, cre]
Maintainer: Marc Comas-Cufi <mcomas@imae.udg.edu>
Diff between coda.pack versions 0.1.2 dated 2026-04-10 and 0.1.3 dated 2026-04-19
DESCRIPTION | 6 - MD5 | 13 ++- NAMESPACE | 1 R/dev_install.R | 150 ++++++++++++++++++++++++++++++++++++++++++-- R/load_coda.pack.R | 4 - R/zzz.R | 3 man/install_coda_dev.Rd | 2 man/update_coda_packages.Rd |only 8 files changed, 160 insertions(+), 19 deletions(-)
Title: International Classification of Diseases 'ICD-10'/'ICD-11' for
Chile
Description: Tools for working with the International Classification of
Diseases ('ICD-10' Chile official 'MINSAL'/'DEIS' v2018). Includes
optimized 'SQL' search with 'SQLite', fuzzy matching of medical terms
('Jaro-Winkler'), Charlson and Elixhauser comorbidity calculation,
'WHO' 'ICD-11' 'API' integration, and hierarchical code validation.
Data from Centro FIC Chile 'DEIS' <https://deis.minsal.cl/centrofic/>.
Author: Rodolfo Tasso Suazo [aut, cre]
Maintainer: Rodolfo Tasso Suazo <rtasso@uchile.cl>
Diff between ciecl versions 0.9.2 dated 2026-01-27 and 0.9.6 dated 2026-04-19
ciecl-0.9.2/ciecl/inst/doc/ciecl-en.R |only ciecl-0.9.2/ciecl/inst/doc/ciecl-en.Rmd |only ciecl-0.9.2/ciecl/inst/doc/ciecl-en.html |only ciecl-0.9.2/ciecl/man/generar_cie10_cl.Rd |only ciecl-0.9.2/ciecl/tools |only ciecl-0.9.2/ciecl/vignettes/ciecl-en.Rmd |only ciecl-0.9.6/ciecl/DESCRIPTION | 27 ciecl-0.9.6/ciecl/MD5 | 122 +- ciecl-0.9.6/ciecl/NAMESPACE | 6 ciecl-0.9.6/ciecl/NEWS.md | 83 + ciecl-0.9.6/ciecl/R/cie-api.R | 54 ciecl-0.9.6/ciecl/R/cie-comorbid.R | 55 ciecl-0.9.6/ciecl/R/cie-data.R | 51 ciecl-0.9.6/ciecl/R/cie-search.R | 669 +++++++++--- ciecl-0.9.6/ciecl/R/cie-sql.R | 305 ++++- ciecl-0.9.6/ciecl/R/cie-table.R | 24 ciecl-0.9.6/ciecl/R/cie-utils.R | 124 +- ciecl-0.9.6/ciecl/R/ciecl-package.R |only ciecl-0.9.6/ciecl/R/zzz.R |only ciecl-0.9.6/ciecl/README.md | 345 +++--- ciecl-0.9.6/ciecl/build/vignette.rds |binary ciecl-0.9.6/ciecl/inst/CITATION | 19 ciecl-0.9.6/ciecl/inst/doc/caso-uso-egresos.R |only ciecl-0.9.6/ciecl/inst/doc/caso-uso-egresos.Rmd |only ciecl-0.9.6/ciecl/inst/doc/caso-uso-egresos.html |only ciecl-0.9.6/ciecl/inst/doc/ciecl-es.R |only ciecl-0.9.6/ciecl/inst/doc/ciecl-es.Rmd |only ciecl-0.9.6/ciecl/inst/doc/ciecl-es.html |only ciecl-0.9.6/ciecl/inst/doc/ciecl.R | 58 - ciecl-0.9.6/ciecl/inst/doc/ciecl.Rmd | 82 - ciecl-0.9.6/ciecl/inst/doc/ciecl.html | 156 +- ciecl-0.9.6/ciecl/inst/doc/idiomas.Rmd | 2 ciecl-0.9.6/ciecl/inst/doc/idiomas.html | 6 ciecl-0.9.6/ciecl/inst/doc/instalacion.html | 4 ciecl-0.9.6/ciecl/man/cie10_cl.Rd | 2 ciecl-0.9.6/ciecl/man/cie10_clear_cache.Rd | 49 ciecl-0.9.6/ciecl/man/cie10_disconnect.Rd |only ciecl-0.9.6/ciecl/man/cie10_sql.Rd | 72 - ciecl-0.9.6/ciecl/man/cie11_search.Rd | 78 - ciecl-0.9.6/ciecl/man/cie_comorbid.Rd | 78 - ciecl-0.9.6/ciecl/man/cie_expand.Rd | 49 ciecl-0.9.6/ciecl/man/cie_guia_busqueda.Rd | 44 ciecl-0.9.6/ciecl/man/cie_lookup.Rd | 38 ciecl-0.9.6/ciecl/man/cie_map_comorbid.Rd | 49 ciecl-0.9.6/ciecl/man/cie_normalizar.Rd | 107 + ciecl-0.9.6/ciecl/man/cie_search.Rd | 139 +- ciecl-0.9.6/ciecl/man/cie_siglas.Rd | 73 - ciecl-0.9.6/ciecl/man/cie_table.Rd | 53 ciecl-0.9.6/ciecl/man/cie_validate_vector.Rd | 53 ciecl-0.9.6/ciecl/man/ciecl-package.Rd |only ciecl-0.9.6/ciecl/man/figures/logo.png |only ciecl-0.9.6/ciecl/tests/testthat/setup.R | 49 ciecl-0.9.6/ciecl/tests/testthat/test-api-mock.R | 278 +++- ciecl-0.9.6/ciecl/tests/testthat/test-cie-api.R | 416 +++---- ciecl-0.9.6/ciecl/tests/testthat/test-cie-comorbid.R | 29 ciecl-0.9.6/ciecl/tests/testthat/test-cie-data.R | 508 +++++---- ciecl-0.9.6/ciecl/tests/testthat/test-cie-search.R | 332 +++-- ciecl-0.9.6/ciecl/tests/testthat/test-cie-sql.R | 595 +++++++--- ciecl-0.9.6/ciecl/tests/testthat/test-cie-table.R | 17 ciecl-0.9.6/ciecl/tests/testthat/test-cie-utils.R | 224 ++-- ciecl-0.9.6/ciecl/tests/testthat/test-comorbid-validation.R | 16 ciecl-0.9.6/ciecl/tests/testthat/test-data-integrity.R | 16 ciecl-0.9.6/ciecl/tests/testthat/test-edge-cases.R | 54 ciecl-0.9.6/ciecl/tests/testthat/test-encoding.R | 24 ciecl-0.9.6/ciecl/tests/testthat/test-integration.R | 30 ciecl-0.9.6/ciecl/tests/testthat/test-performance-scale.R |only ciecl-0.9.6/ciecl/tests/testthat/test-robustness.R | 78 - ciecl-0.9.6/ciecl/tests/testthat/test-utils-internal.R | 30 ciecl-0.9.6/ciecl/vignettes/caso-uso-egresos.Rmd |only ciecl-0.9.6/ciecl/vignettes/ciecl-es.Rmd |only ciecl-0.9.6/ciecl/vignettes/ciecl.Rmd | 82 - ciecl-0.9.6/ciecl/vignettes/idiomas.Rmd | 2 72 files changed, 3650 insertions(+), 2206 deletions(-)
Title: Functional Utilities for Data Processing
Description: Covers several areas of data processing: batch-splitting, reading and writing of large
data files, data tiling, one-hot encoding and decoding of data tiles, stratified proportional
(random or probabilistic) data sampling, data normalization and thresholding, substring location
and commonalities inside strings and location and tabulation of amino acids, modifications or
associated monoisotopic masses inside modified peptides. The extractor utility implements code from
'Matrix.utils', Varrichio C (2020), <https://cran.r-project.org/package=Matrix.utils>.
Author: Dragos Bandur [aut, cre]
Maintainer: Dragos Bandur <dbandur@sympatico.ca>
Diff between akin versions 0.2.1 dated 2026-04-17 and 0.3.0 dated 2026-04-19
DESCRIPTION | 6 +++--- MD5 | 15 +++++++++------ NAMESPACE | 1 + NEWS.md | 4 ++++ R/core.R |only R/fcommon.R |only R/tileD.R | 2 +- R/utils.R | 10 ++++++++++ man/fcommon.Rd |only man/tileData.Rd | 2 +- 10 files changed, 29 insertions(+), 11 deletions(-)
Title: Nonparametric Estimators for Covariance Functions
Description: Several nonparametric estimators of autocovariance functions. Procedures for constructing their confidence regions by using bootstrap techniques. Methods to correct autocovariance estimators and several tools for analysing and comparing them. Supplementary functions, including kernel computations and discrete cosine Fourier transforms. For more details see Bilchouris and Olenko (2025) <doi:10.17713/ajs.v54i1.1975>.
Author: Adam Bilchouris [cre, aut] ,
Andriy Olenko [aut]
Maintainer: Adam Bilchouris <adam.bilchouris@gmail.com>
Diff between CovEsts versions 1.0.0 dated 2025-09-10 and 1.1.0 dated 2026-04-19
CovEsts-1.0.0/CovEsts/man/get_tau.Rd |only CovEsts-1.0.0/CovEsts/man/kernel.Rd |only CovEsts-1.0.0/CovEsts/man/kernel_symm.Rd |only CovEsts-1.0.0/CovEsts/man/taper_single.Rd |only CovEsts-1.0.0/CovEsts/man/tapered_single.Rd |only CovEsts-1.0.0/CovEsts/man/window.Rd |only CovEsts-1.0.0/CovEsts/man/window_symm.Rd |only CovEsts-1.1.0/CovEsts/DESCRIPTION | 7 CovEsts-1.1.0/CovEsts/MD5 | 131 - CovEsts-1.1.0/CovEsts/NAMESPACE | 63 CovEsts-1.1.0/CovEsts/R/B_splines_est.R | 662 +++----- CovEsts-1.1.0/CovEsts/R/block_bootstrap.R | 178 +- CovEsts-1.1.0/CovEsts/R/corrected_standard_estimator.R | 528 +++--- CovEsts-1.1.0/CovEsts/R/deprecated.R |only CovEsts-1.1.0/CovEsts/R/kernel_regression_estimator.R | 288 ++- CovEsts-1.1.0/CovEsts/R/kernels.R | 579 +++---- CovEsts-1.1.0/CovEsts/R/metrics.R | 810 +++++---- CovEsts-1.1.0/CovEsts/R/plotting.R |only CovEsts-1.1.0/CovEsts/R/standard_est.R | 361 ++-- CovEsts-1.1.0/CovEsts/R/tapered_estimator.R | 365 +--- CovEsts-1.1.0/CovEsts/R/windows.R | 447 ++--- CovEsts-1.1.0/CovEsts/man/CovEsts-deprecated.Rd |only CovEsts-1.1.0/CovEsts/man/H2n.Rd | 71 CovEsts-1.1.0/CovEsts/man/Xij_mat.Rd | 60 CovEsts-1.1.0/CovEsts/man/adjusted_est.Rd | 177 +- CovEsts-1.1.0/CovEsts/man/adjusted_spline.Rd | 78 CovEsts-1.1.0/CovEsts/man/area_between.Rd | 95 - CovEsts-1.1.0/CovEsts/man/as.double.CovEsts.Rd |only CovEsts-1.1.0/CovEsts/man/block_bootstrap.Rd | 66 CovEsts-1.1.0/CovEsts/man/bootstrap_sample.Rd | 76 CovEsts-1.1.0/CovEsts/man/check_pd.Rd | 86 - CovEsts-1.1.0/CovEsts/man/corrected_est.Rd | 170 +- CovEsts-1.1.0/CovEsts/man/cyclic_matrix.Rd | 68 CovEsts-1.1.0/CovEsts/man/generate_knots.Rd | 56 CovEsts-1.1.0/CovEsts/man/get_taus.Rd | 56 CovEsts-1.1.0/CovEsts/man/hilbert_schmidt.Rd | 91 - CovEsts-1.1.0/CovEsts/man/kernel_ec.Rd |only CovEsts-1.1.0/CovEsts/man/kernel_est.Rd | 148 + CovEsts-1.1.0/CovEsts/man/kernel_symm_ec.Rd |only CovEsts-1.1.0/CovEsts/man/lines.BootEsts.Rd |only CovEsts-1.1.0/CovEsts/man/lines.CovEsts.Rd |only CovEsts-1.1.0/CovEsts/man/lines.VarioEsts.Rd |only CovEsts-1.1.0/CovEsts/man/make_pd.Rd | 23 CovEsts-1.1.0/CovEsts/man/max_distance.Rd | 89 - CovEsts-1.1.0/CovEsts/man/mse.Rd | 75 CovEsts-1.1.0/CovEsts/man/nearest_pd.Rd | 91 - CovEsts-1.1.0/CovEsts/man/normalise_acf.Rd |only CovEsts-1.1.0/CovEsts/man/plot.BootEsts.Rd |only CovEsts-1.1.0/CovEsts/man/plot.CovEsts.Rd |only CovEsts-1.1.0/CovEsts/man/plot.VarioEsts.Rd |only CovEsts-1.1.0/CovEsts/man/print.BootEsts.Rd |only CovEsts-1.1.0/CovEsts/man/print.CovEsts.Rd |only CovEsts-1.1.0/CovEsts/man/print.VarioEsts.Rd |only CovEsts-1.1.0/CovEsts/man/rho_T1.Rd | 138 - CovEsts-1.1.0/CovEsts/man/shrinking.Rd | 102 - CovEsts-1.1.0/CovEsts/man/solve_shrinking.Rd | 64 CovEsts-1.1.0/CovEsts/man/solve_spline.Rd | 104 - CovEsts-1.1.0/CovEsts/man/spectral_norm.Rd | 103 - CovEsts-1.1.0/CovEsts/man/splines_df.Rd | 64 CovEsts-1.1.0/CovEsts/man/splines_est.Rd | 160 + CovEsts-1.1.0/CovEsts/man/standard_est.Rd | 119 - CovEsts-1.1.0/CovEsts/man/starting_locs.Rd | 2 CovEsts-1.1.0/CovEsts/man/taper.Rd | 84 - CovEsts-1.1.0/CovEsts/man/tapered_est.Rd | 123 - CovEsts-1.1.0/CovEsts/man/to_pacf.Rd | 68 CovEsts-1.1.0/CovEsts/man/to_vario.Rd | 87 - CovEsts-1.1.0/CovEsts/man/truncated_est.Rd | 216 +- CovEsts-1.1.0/CovEsts/man/window_ec.Rd |only CovEsts-1.1.0/CovEsts/man/window_symm_ec.Rd |only CovEsts-1.1.0/CovEsts/tests/testthat/test-B_splines_est.R | 559 +++--- CovEsts-1.1.0/CovEsts/tests/testthat/test-block_bootstrap.R | 394 ++-- CovEsts-1.1.0/CovEsts/tests/testthat/test-corrected_standard_estimator.R | 428 ++--- CovEsts-1.1.0/CovEsts/tests/testthat/test-kernel_regression_estimator.R | 819 +++++----- CovEsts-1.1.0/CovEsts/tests/testthat/test-kernels.R | 374 ++-- CovEsts-1.1.0/CovEsts/tests/testthat/test-metrics.R | 543 +++--- CovEsts-1.1.0/CovEsts/tests/testthat/test-standard_est.R | 205 +- CovEsts-1.1.0/CovEsts/tests/testthat/test-symmetric_kernels.R | 161 + CovEsts-1.1.0/CovEsts/tests/testthat/test-tapered_estimator.R | 421 ++--- CovEsts-1.1.0/CovEsts/tests/testthat/test-windows.R | 291 +-- 79 files changed, 6174 insertions(+), 5450 deletions(-)
Title: Standardized Processing and Analysis of Thermal Imaging Data in
Animal Studies
Description: A modular framework for standardized analysis of thermal imaging data in
animal experimentation. The package integrates thermographic data import
(FLIR, raw, CSV), automated region of interest (ROI) segmentation based on
'EBImage' (Pau et al., 2010 <doi:10.1093/bioinformatics/btq046>), interactive
ROI refinement, and high-throughput batch processing.
Author: BeiHao Li [aut, cre]
Maintainer: BeiHao Li <szright2000@gmail.com>
Diff between BioThermR versions 0.1.0 dated 2026-01-21 and 0.1.1 dated 2026-04-19
DESCRIPTION | 12 MD5 | 25 - NAMESPACE | 30 + R/analysis.r | 681 ++++++++++++++++++++++++++++++++++++- R/visualization.r | 327 +++++++++++++++++ README.md | 17 build/vignette.rds |binary inst/doc/BioThermR_case_study.R |only inst/doc/BioThermR_case_study.Rmd |only inst/doc/BioThermR_case_study.html |only inst/doc/QuickStart.html | 58 +-- inst/extdata/group.csv |only man/analyze_thermal_stats.Rd | 6 man/assess_replicates.Rd |only man/correlate_thermal_traits.Rd |only man/viz_cor_heatmap.Rd |only man/viz_cor_scatter.Rd |only vignettes/BioThermR_case_study.Rmd |only 18 files changed, 1095 insertions(+), 61 deletions(-)
Title: 'SAS' IF Style Data Step Logic for Data Tables
Description: Provides 'SAS'-style IF/ELSE chains, independent IF rules,
and DELETE logic for 'data.table', enabling clinical programmers to
express Study Data Tabulation Model (SDTM) and Analysis Data Model
(ADaM)-style derivations in familiar SAS-like syntax.
Methods are informed by clinical data standards described in CDISC
SDTM and ADaM implementation guides. See
<https://www.cdisc.org/standards/foundational/sdtm> and
<https://www.cdisc.org/standards/foundational/adam>.
Author: Thiyagarajan Chandrasekaran [aut, cre]
Maintainer: Thiyagarajan Chandrasekaran <chandrt23@gmail.com>
Diff between sasif versions 0.1.2 dated 2026-02-03 and 0.1.3 dated 2026-04-19
DESCRIPTION | 12 +++++++++--- MD5 | 11 ++++++++++- NEWS.md |only README.md |only build |only inst |only tests |only vignettes |only 8 files changed, 19 insertions(+), 4 deletions(-)
Title: Fast Unified Random Forests for Survival, Regression, and
Classification (RF-SRC)
Description: Fast OpenMP parallel computing of Breiman's random forests for univariate, multivariate, unsupervised, survival, competing risks, class imbalanced classification and quantile regression. New Mahalanobis splitting for correlated outcomes. Extreme random forests and randomized splitting. Suite of imputation methods for missing data. Fast random forests using subsampling. Confidence regions and standard errors for variable importance. New improved holdout importance. Case-specific importance. Minimal depth variable importance. Visualize trees on your Safari or Google Chrome browser. Anonymous random forests for data privacy.
Author: Hemant Ishwaran [aut],
Udaya B. Kogalur [aut, cre]
Maintainer: Udaya B. Kogalur <ubk@kogalur.com>
Diff between randomForestSRC versions 3.6.1 dated 2026-04-10 and 3.6.2 dated 2026-04-19
randomForestSRC-3.6.1/randomForestSRC/R/utilities_impute.learn.R |only randomForestSRC-3.6.2/randomForestSRC/DESCRIPTION | 8 randomForestSRC-3.6.2/randomForestSRC/MD5 | 18 - randomForestSRC-3.6.2/randomForestSRC/NEWS.md | 35 +- randomForestSRC-3.6.2/randomForestSRC/R/generic.predict.rfsrc.R | 2 randomForestSRC-3.6.2/randomForestSRC/R/impute.learn.rfsrc.R | 136 ++++++- randomForestSRC-3.6.2/randomForestSRC/R/rfsrc.R | 4 randomForestSRC-3.6.2/randomForestSRC/R/utilities_impute_learn.R |only randomForestSRC-3.6.2/randomForestSRC/data/follic.rda |binary randomForestSRC-3.6.2/randomForestSRC/data/peakVO2.rda |binary randomForestSRC-3.6.2/randomForestSRC/man/impute.learn.rfsrc.Rd | 174 +++++++--- 11 files changed, 285 insertions(+), 92 deletions(-)
More information about randomForestSRC at CRAN
Permanent link
Title: Explore Catálogo Taxônomico da Fauna do Brasil Database
Description: A collection of functions designed to retrieve, filter and spatialize data from the Catálogo Taxônomico da Fauna do Brasil. For more information about the dataset, please visit <https://fauna.jbrj.gov.br/fauna/listaBrasil/>.
Author: Weverton Trindade [aut, cre]
Maintainer: Weverton Trindade <wevertonf1993@gmail.com>
Diff between faunabr versions 1.0.0 dated 2025-10-20 and 1.0.1 dated 2026-04-19
DESCRIPTION | 8 ++++---- MD5 | 35 ++++++++++++++++++----------------- NEWS.md | 4 ++++ R/filter_faunabr.R | 2 +- R/helpers.R | 24 ++++++++++++++++-------- README.md | 18 +++++++++++++++++- inst/CITATION |only inst/doc/Spatialize_faunabr.html | 5 +++-- inst/doc/espacializando_faunabr.html | 5 +++-- inst/doc/getting_pam.html | 5 +++-- inst/doc/getting_started.Rmd | 4 ++-- inst/doc/getting_started.html | 9 +++++---- inst/doc/obtendo_pam.html | 5 +++-- inst/doc/primeiros_passos.Rmd | 4 ++-- inst/doc/primeiros_passos.html | 9 +++++---- inst/doc/selecionando_especies.html | 5 +++-- inst/doc/selecting_species.html | 5 +++-- vignettes/getting_started.Rmd | 4 ++-- vignettes/primeiros_passos.Rmd | 4 ++-- 19 files changed, 96 insertions(+), 59 deletions(-)
Title: Data Published by the United States Federal Energy Regulatory
Commission
Description: Data published by the United States Federal Energy Regulatory Commission including
electric company financial data, natural gas company financial data,
hydropower plant data, liquified natural gas plant data, oil company financial data
natural gas company financial data, and natural gas storage field data.
Author: Paul Govan [aut, cre, cph]
Maintainer: Paul Govan <paul.govan2@gmail.com>
Diff between energyr versions 0.2 dated 2025-11-23 and 0.4 dated 2026-04-19
DESCRIPTION | 10 +++++----- MD5 | 36 ++++++++++++++++++------------------ NEWS.md | 8 ++++++++ R/electric.R | 2 +- R/gas.R | 2 +- R/hydropower.R | 6 ++++-- R/lng.R | 2 +- R/oil.R | 2 +- R/pipeline.R | 2 +- R/storage.R | 2 +- data/electric.rda |binary data/gas.rda |binary data/hydropower.rda |binary data/lng.rda |binary data/oil.rda |binary data/pipeline.rda |binary data/storage.rda |binary tests/testthat/test-hydro.R | 2 +- tests/testthat/test-storage.R | 2 +- 19 files changed, 43 insertions(+), 33 deletions(-)
Title: Detect and Check for Separation and Infinite Maximum Likelihood
Estimates
Description: Provides pre-fit and post-fit methods for detecting separation and infinite maximum likelihood estimates in generalized linear models with categorical responses. The pre-fit methods apply on binomial-response generalized liner models such as logit, probit and cloglog regression, and can be directly supplied as fitting methods to the glm() function. They solve the linear programming problems for the detection of separation developed in Konis (2007, <https://ora.ox.ac.uk/objects/uuid:8f9ee0d0-d78e-4101-9ab4-f9cbceed2a2a>) using 'ROI' <https://cran.r-project.org/package=ROI> or 'lpSolveAPI' <https://cran.r-project.org/package=lpSolveAPI>. The post-fit methods apply to models with categorical responses, including binomial-response generalized linear models and multinomial-response models, such as baseline category logits and adjacent category logits models; for example, the models implemented in the 'brglm2' <https://cran.r-project.org/package=brglm2> package. The p [...truncated...]
Author: Ioannis Kosmidis [aut, cre] ,
Dirk Schumacher [aut],
Florian Schwendinger [aut],
Kjell Konis [ctb]
Maintainer: Ioannis Kosmidis <ioannis.kosmidis@warwick.ac.uk>
Diff between detectseparation versions 0.3 dated 2022-08-26 and 0.4.0 dated 2026-04-19
detectseparation-0.3/detectseparation/man/figures/README-unnamed-chunk-5-1.png |only detectseparation-0.4.0/detectseparation/DESCRIPTION | 11 detectseparation-0.4.0/detectseparation/MD5 | 54 - detectseparation-0.4.0/detectseparation/NEWS.md | 23 detectseparation-0.4.0/detectseparation/R/check_infinite_estimates.R | 46 - detectseparation-0.4.0/detectseparation/R/data.R | 100 +- detectseparation-0.4.0/detectseparation/R/detect_infinite_estimates.R | 77 +- detectseparation-0.4.0/detectseparation/R/detect_separation.R | 216 +++-- detectseparation-0.4.0/detectseparation/R/detectseparation-package.R | 11 detectseparation-0.4.0/detectseparation/R/linear_programs.R | 56 + detectseparation-0.4.0/detectseparation/README.md | 76 + detectseparation-0.4.0/detectseparation/build/partial.rdb |binary detectseparation-0.4.0/detectseparation/build/vignette.rds |binary detectseparation-0.4.0/detectseparation/inst/doc/infinite_estimates.R | 18 detectseparation-0.4.0/detectseparation/inst/doc/infinite_estimates.html | 381 +++++----- detectseparation-0.4.0/detectseparation/inst/doc/separation.R | 16 detectseparation-0.4.0/detectseparation/inst/doc/separation.html | 375 ++++----- detectseparation-0.4.0/detectseparation/inst/tinytest/test-detect-separation-ROI.R | 40 + detectseparation-0.4.0/detectseparation/inst/tinytest/test-detect-separation-control.R | 3 detectseparation-0.4.0/detectseparation/man/check_infinite_estimates.Rd | 2 detectseparation-0.4.0/detectseparation/man/check_infinite_estimates.glm.Rd | 37 detectseparation-0.4.0/detectseparation/man/detect_infinite_estimates.Rd | 53 - detectseparation-0.4.0/detectseparation/man/detect_separation.Rd | 102 +- detectseparation-0.4.0/detectseparation/man/detect_separation_control.Rd | 82 +- detectseparation-0.4.0/detectseparation/man/detectseparation.Rd | 22 detectseparation-0.4.0/detectseparation/man/endometrial.Rd | 44 - detectseparation-0.4.0/detectseparation/man/figures/README-unnamed-chunk-7-1.png |only detectseparation-0.4.0/detectseparation/man/lizards.Rd | 39 - detectseparation-0.4.0/detectseparation/man/silvapulle1981.Rd | 13 29 files changed, 1090 insertions(+), 807 deletions(-)
More information about detectseparation at CRAN
Permanent link
Title: Bayesian Estimation of Nonlinear Data (BEND)
Description: Provides a set of models to estimate nonlinear longitudinal data using Bayesian estimation methods. These models include the: 1) Bayesian Piecewise Random Effects Model (Bayes_PREM()) which estimates a piecewise random effects (mixture) model for a given number of latent classes and a latent number of possible changepoints in each class, and can incorporate class and outcome predictive covariates (see Lamm (2022) <https://hdl.handle.net/11299/252533> and Lock et al., (2018) <doi:10.1007/s11336-017-9594-5>), 2) Bayesian Crossed Random Effects Model (Bayes_CREM()) which estimates a linear, quadratic, exponential, or piecewise crossed random effects models where individuals are changing groups over time (e.g., students and schools; see Rohloff et al., (2024) <doi:10.1111/bmsp.12334>), and 3) Bayesian Bivariate Piecewise Random Effects Model (Bayes_BPREM()) which estimates a bivariate piecewise random effects model to jointly model two related outcomes (e.g., reading and [...truncated...]
Author: Corissa T. Rohloff [aut, cre] ,
Rik Lamm [aut] ,
Yadira Peralta [aut] ,
Nidhi Kohli [aut] ,
Eric F. Lock [aut]
Maintainer: Corissa T. Rohloff <corissa.wurth@gmail.com>
Diff between BEND versions 2.0.0 dated 2026-03-30 and 2.0.1 dated 2026-04-18
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS.md | 4 ++++ R/summary_BPREM.R | 6 +++--- 4 files changed, 13 insertions(+), 9 deletions(-)
Title: Extra Functionality for the 'xpose' Package
Description: Adding some at-present missing functionality, or functions
unlikely to be added to the base 'xpose' package. This includes some
diagnostic plots that have been missing in translation from 'xpose4',
but also some useful features that truly extend the capabilities of what
can be done with 'xpose'. These extensions include the concept of a set of
'xpose' objects, and diagnostics for likelihood-based models.
Author: John Prybylski [aut, cre, cph]
Maintainer: John Prybylski <jprybylski@gmail.com>
Diff between xpose.xtras versions 0.1.2 dated 2025-12-01 and 0.1.3 dated 2026-04-18
DESCRIPTION | 6 - MD5 | 66 ++++++++++---------- NEWS.md | 3 R/confusion.R | 4 - R/nlmixr2.R | 10 ++- README.md | 10 +-- data/nlmixr2_m3.rda |binary data/nlmixr2_warfarin.rda |binary data/pheno_base.rda |binary data/pheno_final.rda |binary data/pheno_saem.rda |binary data/pheno_set.rda |binary data/pkpd_m3.rda |binary data/pkpd_m3_df.rda |binary data/vismo_dtmm.rda |binary data/vismo_pomod.rda |binary data/vismodegib.rda |binary data/xpdb_nlmixr2.rda |binary data/xpdb_nlmixr2_saem.rda |binary data/xpdb_set.rda |binary data/xpdb_x.rda |binary inst/WORDLIST | 112 ++++++++++++++++------------------- inst/doc/a01-the-xp_xtra-object.html | 54 ++++++++-------- inst/doc/a02-xpose-sets.html | 18 ++--- inst/doc/a03-useful_plots.html | 22 +++--- man/backfill_nlmixr2_props.Rd | 3 man/figures/README-eta_vs-1.png |binary man/figures/README-eta_vs-2.png |binary man/figures/README-m3-1.png |binary man/figures/README-m3_roc-1.png |binary man/figures/README-shark-1.png |binary man/roc_by_mod.Rd | 4 - man/set_var_levels.Rd | 2 tests/testthat/test-nlmixr2.R | 5 + 34 files changed, 166 insertions(+), 153 deletions(-)
Title: Meta-Analysis of Medians
Description: Implements several methods to meta-analyze studies that report the
sample median of the outcome. The methods described by
McGrath et al. (2019) <doi:10.1002/sim.8013>,
Ozturk and Balakrishnan (2020) <doi:10.1002/sim.8738>, and
McGrath et al. (2020a) <doi:10.1002/bimj.201900036> can be
applied to directly meta-analyze the median or difference of medians between
groups. Additionally, a number of methods (e.g., McGrath et al. (2020b)
<doi:10.1177/0962280219889080>, Cai et al. (2021)
<doi:10.1177/09622802211047348>, and McGrath et al. (2023)
<doi:10.1177/09622802221139233>) are implemented to estimate
study-specific (difference of) means and their standard errors in order to
estimate the pooled (difference of) means. Methods for meta-analyzing median
survival times (McGrath et al. (2026) <doi:10.1002/sim.70533>) are
also implemented. See McGrath et al. (2024) <doi:10.1002/jrsm.1686> for a
detailed guide on using the package.
Author: Sean McGrath [aut, cre] ,
XiaoFei Zhao [aut],
Stephan Katzenschlager [aut],
Omer Ozturk [aut],
Renata Iskander [ctb],
Russell Steele [aut],
Andrea Benedetti [aut]
Maintainer: Sean McGrath <sean.mcgrath514@gmail.com>
Diff between metamedian versions 1.2.1 dated 2025-03-18 and 1.2.2 dated 2026-04-18
DESCRIPTION | 15 ++++++++------- MD5 | 30 +++++++++++++++--------------- NEWS.md | 4 ++++ R/cd.R | 7 +++++-- R/metamean.R | 8 ++++---- R/metamedian.R | 2 +- R/metamedian_survival.R | 4 ++-- R/qe.R | 2 +- R/qe.study.level.R | 2 +- README.md | 10 ++++------ man/cd.Rd | 2 +- man/metamean.Rd | 8 ++++---- man/metamedian.Rd | 2 +- man/metamedian_survival.Rd | 4 ++-- man/qe.Rd | 2 +- man/qe.study.level.Rd | 2 +- 16 files changed, 55 insertions(+), 49 deletions(-)
Title: Simplified 'HDF5' Interface
Description: A user-friendly interface for the Hierarchical Data Format 5
('HDF5') library designed to "just work." It bundles the necessary
system libraries to ensure easy installation on all platforms. Features
smart defaults that automatically map R objects (vectors, matrices,
data frames) to efficient 'HDF5' types, removing the need to manage
low-level details like dataspaces or property lists. Uses the 'HDF5'
library developed by The HDF Group <https://www.hdfgroup.org/>.
Author: Daniel P. Smith [aut, cre] ,
Alkek Center for Metagenomics and Microbiome Research [cph, fnd]
Maintainer: Daniel P. Smith <dansmith01@gmail.com>
Diff between h5lite versions 2.0.0.2 dated 2026-01-29 and 2.1.1.0 dated 2026-04-18
h5lite-2.0.0.2/h5lite/inst/doc/data-organization.R |only h5lite-2.0.0.2/h5lite/inst/doc/data-organization.Rmd |only h5lite-2.0.0.2/h5lite/inst/doc/data-organization.html |only h5lite-2.0.0.2/h5lite/tests/testthat |only h5lite-2.0.0.2/h5lite/tests/testthat.r |only h5lite-2.0.0.2/h5lite/vignettes/data-organization.Rmd |only h5lite-2.1.1.0/h5lite/DESCRIPTION | 20 + h5lite-2.1.1.0/h5lite/MD5 | 131 ++++++---- h5lite-2.1.1.0/h5lite/NAMESPACE | 4 h5lite-2.1.1.0/h5lite/NEWS.md | 9 h5lite-2.1.1.0/h5lite/R/assert.r | 76 ++++++ h5lite-2.1.1.0/h5lite/R/compress.r |only h5lite-2.1.1.0/h5lite/R/info.r | 10 h5lite-2.1.1.0/h5lite/R/inspect.r |only h5lite-2.1.1.0/h5lite/R/open.r | 13 - h5lite-2.1.1.0/h5lite/R/read.r | 194 +++++++++++++--- h5lite-2.1.1.0/h5lite/R/write.r | 29 +- h5lite-2.1.1.0/h5lite/R/zzz.r |only h5lite-2.1.1.0/h5lite/README.md | 80 +++--- h5lite-2.1.1.0/h5lite/build/vignette.rds |binary h5lite-2.1.1.0/h5lite/inst/doc/atomic-vectors.R | 11 h5lite-2.1.1.0/h5lite/inst/doc/atomic-vectors.Rmd | 19 + h5lite-2.1.1.0/h5lite/inst/doc/atomic-vectors.html | 34 +- h5lite-2.1.1.0/h5lite/inst/doc/compression.Rmd |only h5lite-2.1.1.0/h5lite/inst/doc/compression.html |only h5lite-2.1.1.0/h5lite/inst/doc/data-types.R | 15 - h5lite-2.1.1.0/h5lite/inst/doc/data-types.Rmd | 33 +- h5lite-2.1.1.0/h5lite/inst/doc/data-types.html | 73 +++--- h5lite-2.1.1.0/h5lite/inst/doc/h5lite.Rmd | 5 h5lite-2.1.1.0/h5lite/inst/doc/h5lite.html | 11 h5lite-2.1.1.0/h5lite/inst/doc/matrices.R | 6 h5lite-2.1.1.0/h5lite/inst/doc/matrices.Rmd | 10 h5lite-2.1.1.0/h5lite/inst/doc/matrices.html | 26 +- h5lite-2.1.1.0/h5lite/inst/doc/oo-interface.html | 2 h5lite-2.1.1.0/h5lite/inst/doc/organization.R |only h5lite-2.1.1.0/h5lite/inst/doc/organization.Rmd |only h5lite-2.1.1.0/h5lite/inst/doc/organization.html |only h5lite-2.1.1.0/h5lite/inst/doc/partial-reading.R |only h5lite-2.1.1.0/h5lite/inst/doc/partial-reading.Rmd |only h5lite-2.1.1.0/h5lite/inst/doc/partial-reading.html |only h5lite-2.1.1.0/h5lite/man/figures/logo.png |binary h5lite-2.1.1.0/h5lite/man/h5_compression.Rd |only h5lite-2.1.1.0/h5lite/man/h5_dim.Rd | 4 h5lite-2.1.1.0/h5lite/man/h5_inspect.Rd |only h5lite-2.1.1.0/h5lite/man/h5_length.Rd | 2 h5lite-2.1.1.0/h5lite/man/h5_read.Rd | 116 +++++++-- h5lite-2.1.1.0/h5lite/man/h5_write.Rd | 16 - h5lite-2.1.1.0/h5lite/man/print.inspect.Rd |only h5lite-2.1.1.0/h5lite/src/data.frame.c | 91 ++++--- h5lite-2.1.1.0/h5lite/src/dimscales.c | 25 +- h5lite-2.1.1.0/h5lite/src/h5lite.h | 28 +- h5lite-2.1.1.0/h5lite/src/info.c | 30 +- h5lite-2.1.1.0/h5lite/src/init.c | 25 ++ h5lite-2.1.1.0/h5lite/src/inspect.c |only h5lite-2.1.1.0/h5lite/src/read.c | 151 +++++++++--- h5lite-2.1.1.0/h5lite/src/write.c | 20 - h5lite-2.1.1.0/h5lite/src/write_utils.c | 216 +++++++++++++++--- h5lite-2.1.1.0/h5lite/tests/tinytest.r |only h5lite-2.1.1.0/h5lite/tests/tinytests |only h5lite-2.1.1.0/h5lite/vignettes/atomic-vectors.Rmd | 19 + h5lite-2.1.1.0/h5lite/vignettes/compression.Rmd |only h5lite-2.1.1.0/h5lite/vignettes/data-types.Rmd | 33 +- h5lite-2.1.1.0/h5lite/vignettes/h5lite.Rmd | 5 h5lite-2.1.1.0/h5lite/vignettes/matrices.Rmd | 10 h5lite-2.1.1.0/h5lite/vignettes/organization.Rmd |only h5lite-2.1.1.0/h5lite/vignettes/partial-reading.Rmd |only 66 files changed, 1127 insertions(+), 475 deletions(-)
Title: Build 'Rust' Powered 'R' Packages
Description: Provides a framework for creating high-performance 'R'
packages powered by the 'Rust' programming language using the
'extendr' Rust crate. It offers 'usethis'-like functions to scaffold
and develop 'Rust' powered 'R' packages, including utilities for
publishing to CRAN, managing dependencies, configuring development
environments, and rendering 'Rust' code in 'knitr' documents.
Additionally, it provides functions to compile and evaluate 'Rust'
code directly from 'R' for interactive development.
Author: Claus O. Wilke [aut] ,
Andy Thomason [aut],
Mossa M. Reimert [aut],
Ilia Kosenkov [aut] ,
Malcolm Barrett [aut] ,
Josiah Parry [aut] ,
Kenneth Vernon [aut, cre] ,
Alberson Miranda [ctb]
Maintainer: Kenneth Vernon <kenneth.b.vernon@gmail.com>
Diff between rextendr versions 0.4.2 dated 2025-08-26 and 0.5.0 dated 2026-04-18
rextendr-0.4.2/rextendr/R/function_options.R |only rextendr-0.4.2/rextendr/man/vendor_pkgs.Rd |only rextendr-0.4.2/rextendr/vignettes/rmarkdown.html |only rextendr-0.5.0/rextendr/DESCRIPTION | 93 rextendr-0.5.0/rextendr/LICENSE | 4 rextendr-0.5.0/rextendr/MD5 | 252 - rextendr-0.5.0/rextendr/NAMESPACE | 103 rextendr-0.5.0/rextendr/NEWS.md | 235 + rextendr-0.5.0/rextendr/R/badge.R | 70 rextendr-0.5.0/rextendr/R/clean.R | 146 - rextendr-0.5.0/rextendr/R/cran-compliance.R | 362 +- rextendr-0.5.0/rextendr/R/create_extendr_package.R | 104 rextendr-0.5.0/rextendr/R/eval.R | 258 - rextendr-0.5.0/rextendr/R/features.R | 147 - rextendr-0.5.0/rextendr/R/find_exports.R | 136 - rextendr-0.5.0/rextendr/R/find_extendr.R | 127 rextendr-0.5.0/rextendr/R/generate_toml.R | 93 rextendr-0.5.0/rextendr/R/helpers.r | 71 rextendr-0.5.0/rextendr/R/import-standalone-obj-type.R | 752 ++--- rextendr-0.5.0/rextendr/R/import-standalone-types-check.R | 1070 +++---- rextendr-0.5.0/rextendr/R/knitr_engine.R | 141 - rextendr-0.5.0/rextendr/R/license_note.R | 297 +- rextendr-0.5.0/rextendr/R/make_module_macro.R | 54 rextendr-0.5.0/rextendr/R/read_cargo_metadata.R | 121 rextendr-0.5.0/rextendr/R/register_extendr.R | 284 -- rextendr-0.5.0/rextendr/R/rextendr.R | 29 rextendr-0.5.0/rextendr/R/rextendr_document.R | 179 - rextendr-0.5.0/rextendr/R/run_cargo.R | 165 - rextendr-0.5.0/rextendr/R/rust_sitrep.R | 480 +-- rextendr-0.5.0/rextendr/R/sanitize_code.R | 309 +- rextendr-0.5.0/rextendr/R/setup.R | 134 rextendr-0.5.0/rextendr/R/source.R | 1350 ++++++---- rextendr-0.5.0/rextendr/R/standalone-purrr.R | 477 +-- rextendr-0.5.0/rextendr/R/toml_serialization.R | 609 ++-- rextendr-0.5.0/rextendr/R/track_rust_source.R | 190 - rextendr-0.5.0/rextendr/R/update_scaffold.R |only rextendr-0.5.0/rextendr/R/use_crate.R | 213 - rextendr-0.5.0/rextendr/R/use_extendr.R | 929 +++--- rextendr-0.5.0/rextendr/R/use_msrv.R | 174 - rextendr-0.5.0/rextendr/R/use_vscode.R | 190 - rextendr-0.5.0/rextendr/R/utils.R | 224 - rextendr-0.5.0/rextendr/R/write_file.R | 68 rextendr-0.5.0/rextendr/R/zzz.R | 118 rextendr-0.5.0/rextendr/README.md | 382 +- rextendr-0.5.0/rextendr/build/vignette.rds |binary rextendr-0.5.0/rextendr/inst/doc/package.R | 12 rextendr-0.5.0/rextendr/inst/doc/package.Rmd | 644 ++-- rextendr-0.5.0/rextendr/inst/doc/package.html | 1304 ++++----- rextendr-0.5.0/rextendr/inst/doc/setting_up_rust.R | 6 rextendr-0.5.0/rextendr/inst/doc/setting_up_rust.Rmd | 80 rextendr-0.5.0/rextendr/inst/doc/setting_up_rust.html | 866 +++--- rextendr-0.5.0/rextendr/inst/rstudio/templates/project/extendr.dcf | 66 rextendr-0.5.0/rextendr/inst/templates/Cargo.toml | 2 rextendr-0.5.0/rextendr/inst/templates/Makevars.in | 94 rextendr-0.5.0/rextendr/inst/templates/Makevars.win.in | 90 rextendr-0.5.0/rextendr/inst/templates/_gitignore | 13 rextendr-0.5.0/rextendr/inst/templates/cleanup |only rextendr-0.5.0/rextendr/inst/templates/cleanup.win |only rextendr-0.5.0/rextendr/inst/templates/config.R | 224 - rextendr-0.5.0/rextendr/inst/templates/configure.win | 2 rextendr-0.5.0/rextendr/inst/templates/document.rs |only rextendr-0.5.0/rextendr/inst/templates/entrypoint.c | 18 rextendr-0.5.0/rextendr/inst/templates/extendr-wrappers.R | 24 rextendr-0.5.0/rextendr/inst/templates/lib.rs | 32 rextendr-0.5.0/rextendr/inst/templates/msrv.R | 232 - rextendr-0.5.0/rextendr/inst/templates/settings.json | 26 rextendr-0.5.0/rextendr/inst/templates/win.def | 4 rextendr-0.5.0/rextendr/man/clean.Rd | 56 rextendr-0.5.0/rextendr/man/cran.Rd | 70 rextendr-0.5.0/rextendr/man/document.Rd | 63 rextendr-0.5.0/rextendr/man/eng_extendr.Rd | 44 rextendr-0.5.0/rextendr/man/figures/lifecycle-deprecated.svg |only rextendr-0.5.0/rextendr/man/figures/lifecycle-experimental.svg |only rextendr-0.5.0/rextendr/man/figures/lifecycle-stable.svg |only rextendr-0.5.0/rextendr/man/figures/lifecycle-superseded.svg |only rextendr-0.5.0/rextendr/man/inf_dev_extendr_used.Rd | 26 rextendr-0.5.0/rextendr/man/local_quiet_cli.Rd | 48 rextendr-0.5.0/rextendr/man/make_module_macro.Rd | 54 rextendr-0.5.0/rextendr/man/read_cargo_metadata.Rd | 90 rextendr-0.5.0/rextendr/man/register_extendr.Rd | 82 rextendr-0.5.0/rextendr/man/rextendr.Rd | 80 rextendr-0.5.0/rextendr/man/rust_eval.Rd | 88 rextendr-0.5.0/rextendr/man/rust_sitrep.Rd | 28 rextendr-0.5.0/rextendr/man/rust_source.Rd | 344 +- rextendr-0.5.0/rextendr/man/to_toml.Rd | 84 rextendr-0.5.0/rextendr/man/update_scaffold.Rd |only rextendr-0.5.0/rextendr/man/use_crate.Rd | 126 rextendr-0.5.0/rextendr/man/use_extendr.Rd | 121 rextendr-0.5.0/rextendr/man/use_extendr_badge.Rd | 46 rextendr-0.5.0/rextendr/man/use_msrv.Rd | 102 rextendr-0.5.0/rextendr/man/use_vscode.Rd | 62 rextendr-0.5.0/rextendr/man/vendor_crates.Rd |only rextendr-0.5.0/rextendr/man/write_license_note.Rd | 66 rextendr-0.5.0/rextendr/tests/data/inner_1/rust_source.rs | 16 rextendr-0.5.0/rextendr/tests/data/inner_2/rust_source.rs | 16 rextendr-0.5.0/rextendr/tests/data/ndarray_example.rs | 24 rextendr-0.5.0/rextendr/tests/data/rust_source.rs | 16 rextendr-0.5.0/rextendr/tests/data/test-default-arg.Rmd |only rextendr-0.5.0/rextendr/tests/data/test-knitr-engine-source-01.Rmd | 168 - rextendr-0.5.0/rextendr/tests/testthat.R | 24 rextendr-0.5.0/rextendr/tests/testthat/_snaps/cran-compliance.md | 60 rextendr-0.5.0/rextendr/tests/testthat/_snaps/document.md |only rextendr-0.5.0/rextendr/tests/testthat/_snaps/knitr-engine.md | 192 - rextendr-0.5.0/rextendr/tests/testthat/_snaps/license_note.md | 160 - rextendr-0.5.0/rextendr/tests/testthat/_snaps/rust-sitrep.md | 244 - rextendr-0.5.0/rextendr/tests/testthat/_snaps/use_extendr.md | 1009 ++++--- rextendr-0.5.0/rextendr/tests/testthat/helper-toolchain.R | 72 rextendr-0.5.0/rextendr/tests/testthat/helper.R | 254 - rextendr-0.5.0/rextendr/tests/testthat/setup.R | 22 rextendr-0.5.0/rextendr/tests/testthat/test-clean.R | 51 rextendr-0.5.0/rextendr/tests/testthat/test-cran-compliance.R | 99 rextendr-0.5.0/rextendr/tests/testthat/test-document.R | 184 - rextendr-0.5.0/rextendr/tests/testthat/test-eval.R | 282 +- rextendr-0.5.0/rextendr/tests/testthat/test-extendr_function_options.R | 220 - rextendr-0.5.0/rextendr/tests/testthat/test-find_extendr.R | 66 rextendr-0.5.0/rextendr/tests/testthat/test-knitr-engine.R | 84 rextendr-0.5.0/rextendr/tests/testthat/test-license_note.R | 34 rextendr-0.5.0/rextendr/tests/testthat/test-make-module-macro.R | 354 +- rextendr-0.5.0/rextendr/tests/testthat/test-name-override.R | 102 rextendr-0.5.0/rextendr/tests/testthat/test-optional-features.R | 116 rextendr-0.5.0/rextendr/tests/testthat/test-pretty_rel_path.R | 252 - rextendr-0.5.0/rextendr/tests/testthat/test-read_cargo_metadata.R | 76 rextendr-0.5.0/rextendr/tests/testthat/test-rstudio-template.R | 50 rextendr-0.5.0/rextendr/tests/testthat/test-rust-sitrep.R | 306 +- rextendr-0.5.0/rextendr/tests/testthat/test-source.R | 316 +- rextendr-0.5.0/rextendr/tests/testthat/test-toml.R | 210 - rextendr-0.5.0/rextendr/tests/testthat/test-update_scaffold.R |only rextendr-0.5.0/rextendr/tests/testthat/test-use_crate.R | 200 - rextendr-0.5.0/rextendr/tests/testthat/test-use_dev_extendr.R | 28 rextendr-0.5.0/rextendr/tests/testthat/test-use_extendr.R | 494 +-- rextendr-0.5.0/rextendr/tests/testthat/test-use_msrv.R | 56 rextendr-0.5.0/rextendr/tests/testthat/test-use_vscode.R | 94 rextendr-0.5.0/rextendr/tests/testthat/test-utils.R | 124 rextendr-0.5.0/rextendr/vignettes/package.Rmd | 644 ++-- rextendr-0.5.0/rextendr/vignettes/setting_up_rust.Rmd | 80 135 files changed, 11980 insertions(+), 11378 deletions(-)
Title: Make PX-Files in R
Description: Create PX-files from scratch or read and modify existing ones.
Includes a function for every PX keyword, making metadata manipulation
simple and human-readable.
Author: Johan Ejstrud [cre, aut],
Lars Pedersen [aut],
Statistics Greenland [cph]
Maintainer: Johan Ejstrud <johan@ejstrud.com>
Diff between pxmake versions 0.19.0 dated 2025-12-16 and 0.20.1 dated 2026-04-18
pxmake-0.19.0/pxmake/man/readLines_guess_encoding.Rd |only pxmake-0.19.0/pxmake/man/readLines_with_encoding.Rd |only pxmake-0.19.0/pxmake/tests/benchmark |only pxmake-0.19.0/pxmake/tests/testthat/test-71-px-pxave-equivalent.R |only pxmake-0.19.0/pxmake/tests/testthat/test-91-micromake.R |only pxmake-0.20.1/pxmake/DESCRIPTION | 6 pxmake-0.20.1/pxmake/MD5 | 233 +-- pxmake-0.20.1/pxmake/NAMESPACE | 18 pxmake-0.20.1/pxmake/NEWS.md | 140 + pxmake-0.20.1/pxmake/R/add_totals.R | 64 pxmake-0.20.1/pxmake/R/classification.R | 376 ++--- pxmake-0.20.1/pxmake/R/data_df.R | 184 +- pxmake-0.20.1/pxmake/R/documentation.R | 151 +- pxmake-0.20.1/pxmake/R/excel.R | 380 ++--- pxmake-0.20.1/pxmake/R/helper_functions.R | 263 +-- pxmake-0.20.1/pxmake/R/keywords.R | 16 pxmake-0.20.1/pxmake/R/metadata_df.R | 567 ++++--- pxmake-0.20.1/pxmake/R/micro.R | 164 +- pxmake-0.20.1/pxmake/R/modify_acrosscells.R | 2 pxmake-0.20.1/pxmake/R/modify_cells1.R | 2 pxmake-0.20.1/pxmake/R/modify_cells2.R | 14 pxmake-0.20.1/pxmake/R/modify_data.R | 202 +- pxmake-0.20.1/pxmake/R/modify_helpers.R | 214 +- pxmake-0.20.1/pxmake/R/modify_languages.R | 95 - pxmake-0.20.1/pxmake/R/modify_note.R | 4 pxmake-0.20.1/pxmake/R/modify_table2.R | 129 + pxmake-0.20.1/pxmake/R/modify_variable1.R | 159 +- pxmake-0.20.1/pxmake/R/modify_variable2.R | 43 pxmake-0.20.1/pxmake/R/note_warning_error.R | 408 ++--- pxmake-0.20.1/pxmake/R/px.R | 61 pxmake-0.20.1/pxmake/R/px_base_tables.R | 170 +- pxmake-0.20.1/pxmake/R/px_file.R | 745 +++++----- pxmake-0.20.1/pxmake/R/r_script.R | 114 - pxmake-0.20.1/pxmake/README.md | 46 pxmake-0.20.1/pxmake/data/px_keywords.rda |binary pxmake-0.20.1/pxmake/inst/doc/first-px-file.R | 6 pxmake-0.20.1/pxmake/inst/doc/first-px-file.Rmd | 6 pxmake-0.20.1/pxmake/inst/doc/first-px-file.html | 4 pxmake-0.20.1/pxmake/inst/doc/languages.R | 12 pxmake-0.20.1/pxmake/inst/doc/languages.Rmd | 12 pxmake-0.20.1/pxmake/inst/doc/languages.html | 12 pxmake-0.20.1/pxmake/inst/doc/micro-files.R | 49 pxmake-0.20.1/pxmake/inst/doc/micro-files.Rmd | 49 pxmake-0.20.1/pxmake/inst/doc/micro-files.html | 75 - pxmake-0.20.1/pxmake/man/add_total_level_to_var.Rd | 4 pxmake-0.20.1/pxmake/man/add_totals_to_df.Rd | 4 pxmake-0.20.1/pxmake/man/aggregation_df.Rd | 4 pxmake-0.20.1/pxmake/man/get_data_table.Rd | 4 pxmake-0.20.1/pxmake/man/px.Rd | 18 pxmake-0.20.1/pxmake/man/px_add_totals.px.Rd | 6 pxmake-0.20.1/pxmake/man/px_classification.Rd | 57 pxmake-0.20.1/pxmake/man/px_contvariable.px.Rd | 2 pxmake-0.20.1/pxmake/man/px_data.px.Rd | 4 pxmake-0.20.1/pxmake/man/px_database.px.Rd |only pxmake-0.20.1/pxmake/man/px_datasymbol1.px.Rd |only pxmake-0.20.1/pxmake/man/px_datasymbol2.px.Rd |only pxmake-0.20.1/pxmake/man/px_datasymbol3.px.Rd |only pxmake-0.20.1/pxmake/man/px_datasymbol4.px.Rd |only pxmake-0.20.1/pxmake/man/px_datasymbol5.px.Rd |only pxmake-0.20.1/pxmake/man/px_datasymbol6.px.Rd |only pxmake-0.20.1/pxmake/man/px_datasymbolnil.px.Rd |only pxmake-0.20.1/pxmake/man/px_domain.px.Rd | 2 pxmake-0.20.1/pxmake/man/px_elimination.px.Rd | 10 pxmake-0.20.1/pxmake/man/px_figures.px.Rd | 2 pxmake-0.20.1/pxmake/man/px_heading.px.Rd | 4 pxmake-0.20.1/pxmake/man/px_language.px.Rd | 2 pxmake-0.20.1/pxmake/man/px_languages.px.Rd | 2 pxmake-0.20.1/pxmake/man/px_map.px.Rd | 2 pxmake-0.20.1/pxmake/man/px_micro.Rd | 3 pxmake-0.20.1/pxmake/man/px_note.px.Rd | 11 pxmake-0.20.1/pxmake/man/px_notex.px.Rd | 11 pxmake-0.20.1/pxmake/man/px_refperiod.px.Rd |only pxmake-0.20.1/pxmake/man/px_save_classification.Rd | 11 pxmake-0.20.1/pxmake/man/px_stub.px.Rd | 4 pxmake-0.20.1/pxmake/man/px_variable_label.px.Rd | 22 pxmake-0.20.1/pxmake/man/px_variable_type.px.Rd | 4 pxmake-0.20.1/pxmake/man/quote_unless_yes_no.Rd | 6 pxmake-0.20.1/pxmake/man/read_lines_guess_encoding.Rd |only pxmake-0.20.1/pxmake/man/read_lines_with_encoding.Rd |only pxmake-0.20.1/pxmake/man/update_data_table.Rd | 4 pxmake-0.20.1/pxmake/man/validate_px_arguments.Rd | 3 pxmake-0.20.1/pxmake/man/validate_px_data_arguments.Rd | 4 pxmake-0.20.1/pxmake/tests/testthat/fixtures/make_source_data_examples.R | 58 pxmake-0.20.1/pxmake/tests/testthat/fixtures/px/SOXATI4.px | 42 pxmake-0.20.1/pxmake/tests/testthat/fixtures/px/semicolon_in_values.px |only pxmake-0.20.1/pxmake/tests/testthat/helper.R | 64 pxmake-0.20.1/pxmake/tests/testthat/test-00-documentation.R | 6 pxmake-0.20.1/pxmake/tests/testthat/test-00-helper_functions.R | 343 ++-- pxmake-0.20.1/pxmake/tests/testthat/test-00-modify-helpers.R | 266 +-- pxmake-0.20.1/pxmake/tests/testthat/test-00-note_warning_error.R | 82 - pxmake-0.20.1/pxmake/tests/testthat/test-00-validate.R | 159 +- pxmake-0.20.1/pxmake/tests/testthat/test-08-aggregation_df.R | 48 pxmake-0.20.1/pxmake/tests/testthat/test-09-px_classification_from_path.R | 36 pxmake-0.20.1/pxmake/tests/testthat/test-10-classification.R | 149 +- pxmake-0.20.1/pxmake/tests/testthat/test-11-classification-note-warning-error.R | 231 +-- pxmake-0.20.1/pxmake/tests/testthat/test-12-classification_save.R | 18 pxmake-0.20.1/pxmake/tests/testthat/test-13-classification-inverse.R | 27 pxmake-0.20.1/pxmake/tests/testthat/test-14-classification-robust.R | 2 pxmake-0.20.1/pxmake/tests/testthat/test-30-add_totals.R | 185 +- pxmake-0.20.1/pxmake/tests/testthat/test-49-px.R | 7 pxmake-0.20.1/pxmake/tests/testthat/test-50-px-urls.R | 8 pxmake-0.20.1/pxmake/tests/testthat/test-51-px-valid-px-file.R | 58 pxmake-0.20.1/pxmake/tests/testthat/test-51-pxsave.R | 55 pxmake-0.20.1/pxmake/tests/testthat/test-52-px-ordering.R | 117 - pxmake-0.20.1/pxmake/tests/testthat/test-53-pxjob-px-pxsave.R | 64 pxmake-0.20.1/pxmake/tests/testthat/test-55-modify-acrosscells.R | 46 pxmake-0.20.1/pxmake/tests/testthat/test-55-modify-cells1.R | 70 pxmake-0.20.1/pxmake/tests/testthat/test-55-modify-cells2.R | 117 - pxmake-0.20.1/pxmake/tests/testthat/test-55-modify-data.R | 273 +-- pxmake-0.20.1/pxmake/tests/testthat/test-55-modify-note.R | 128 - pxmake-0.20.1/pxmake/tests/testthat/test-55-modify-table1.R | 74 pxmake-0.20.1/pxmake/tests/testthat/test-55-modify-table2.R | 162 +- pxmake-0.20.1/pxmake/tests/testthat/test-55-modify-variables1.R | 137 - pxmake-0.20.1/pxmake/tests/testthat/test-55-modify-variables2.R | 75 - pxmake-0.20.1/pxmake/tests/testthat/test-56-modify-languages.R | 71 pxmake-0.20.1/pxmake/tests/testthat/test-57-contvariable.R | 22 pxmake-0.20.1/pxmake/tests/testthat/test-59-map.R | 11 pxmake-0.20.1/pxmake/tests/testthat/test-60-px-pxsave-preserves.R | 54 pxmake-0.20.1/pxmake/tests/testthat/test-71-pxjob-px-pxave-equivalent.R |only pxmake-0.20.1/pxmake/tests/testthat/test-72-px-pxsave-px-pxsave-equivalent.R | 18 pxmake-0.20.1/pxmake/tests/testthat/test-73-pxjob-px-pxsave-excel.R | 116 - pxmake-0.20.1/pxmake/tests/testthat/test-74-pxsave-to-R-preserves.R | 32 pxmake-0.20.1/pxmake/tests/testthat/test-80-interface.R | 17 pxmake-0.20.1/pxmake/tests/testthat/test-91-pxjob-micromake.R |only pxmake-0.20.1/pxmake/vignettes/first-px-file.Rmd | 6 pxmake-0.20.1/pxmake/vignettes/languages.Rmd | 12 pxmake-0.20.1/pxmake/vignettes/micro-files.Rmd | 49 127 files changed, 4920 insertions(+), 4000 deletions(-)
Title: Methods for Optimizing Scales of Effect
Description: A tool for optimizing scales of effect when modeling ecological processes in space. Specifically, the scale parameter of a distance-weighted kernel distribution is identified for all environmental layers included in the model. Includes functions to assist in model selection, model evaluation, efficient transformation of raster surfaces using fast Fourier transformation, and projecting models. For more details see Peterman (2026) <doi:10.1007/s10980-025-02267-x>.
Author: Bill Peterman [aut, cre]
Maintainer: Bill Peterman <Peterman.73@osu.edu>
Diff between multiScaleR versions 0.6.6 dated 2026-04-13 and 0.6.13 dated 2026-04-18
DESCRIPTION | 9 MD5 | 57 ++--- NEWS | 34 +++ R/kernel_dist.R | 14 - R/kernel_prep.R | 23 +- R/kernel_scale_fn.R | 178 +++++++++++++---- R/multiScale_optim.R | 15 - R/parallel_helpers.R | 167 ++++++++++++++-- R/profile_sigma.R | 104 ++++++++-- build/vignette.rds |binary inst/doc/multiScaleR_Guide.R | 58 ++--- inst/doc/multiScaleR_Guide.Rmd | 176 ++++++++--------- inst/doc/multiScaleR_Guide.html | 102 +++++----- inst/doc/quickstart.R | 2 inst/doc/quickstart.Rmd | 2 inst/doc/quickstart.html | 14 - inst/doc/spatial_projection_clamping.html | 8 man/kernel_prep.Rd | 2 man/profile_sigma.Rd | 53 ++++- src/Makevars | 2 src/Makevars.win | 2 src/multiScaleR_Rcpp_compat.h |only src/scale_type_sparse.cpp | 28 ++ tests/testthat/test-internals-and-helpers.R | 56 +++-- tests/testthat/test-kernel-math.R | 47 ++++ tests/testthat/test-kernel-prep.R | 15 - tests/testthat/test-optimization-workflow.R | 279 +++++++++++++++++++++------- tests/testthat/test-raster-and-plotting.R | 37 +++ vignettes/multiScaleR_Guide.Rmd | 176 ++++++++--------- vignettes/quickstart.Rmd | 2 30 files changed, 1133 insertions(+), 529 deletions(-)
Title: Collection of Correlation and Association Estimators
Description: Compute correlation, association, agreement, and reliability
measures for small to high-dimensional datasets through a consistent
matrix-oriented interface. Supports classical correlations (Pearson,
Spearman, Kendall), distance correlation, partial correlation with
regularised estimators, shrinkage correlation for p >= n settings, robust
correlations including biweight mid-correlation, percentage-bend, and
skipped correlation, latent-variable methods for binary and ordinal data,
pairwise and overall intraclass correlation for wide data,
repeated-measures correlation, and agreement analyses based on
Bland-Altman methods, Lin's concordance correlation coefficient, and
repeated-measures intraclass correlation. Implemented with optimized C++
backends using BLAS/OpenMP and memory-aware symmetric updates, and returns
standard R objects with print/summary/plot methods plus optional Shiny
viewers for matrix inspection. Methods based on Ledoit and Wolf (2004)
<doi:10.1016/S0047-259X(03)00 [...truncated...]
Author: Thiago de Paula Oliveira [aut, cre]
Maintainer: Thiago de Paula Oliveira <thiago.paula.oliveira@gmail.com>
Diff between matrixCorr versions 0.10.0 dated 2026-04-03 and 0.11.1 dated 2026-04-18
matrixCorr-0.10.0/matrixCorr/man/print.summary_corr_matrix.Rd |only matrixCorr-0.10.0/matrixCorr/man/print.summary_latent_corr.Rd |only matrixCorr-0.10.0/matrixCorr/man/schafer_corr.Rd |only matrixCorr-0.11.1/matrixCorr/DESCRIPTION | 52 matrixCorr-0.11.1/matrixCorr/MD5 | 256 matrixCorr-0.11.1/matrixCorr/NAMESPACE | 60 matrixCorr-0.11.1/matrixCorr/R/RcppExports.R | 60 matrixCorr-0.11.1/matrixCorr/R/ba.R | 481 - matrixCorr-0.11.1/matrixCorr/R/ba_rm.R | 727 +- matrixCorr-0.11.1/matrixCorr/R/bicor.R | 570 + matrixCorr-0.11.1/matrixCorr/R/ccc_repeated.R | 629 +- matrixCorr-0.11.1/matrixCorr/R/concordance_corr.R | 404 - matrixCorr-0.11.1/matrixCorr/R/corr_result_s3.R |only matrixCorr-0.11.1/matrixCorr/R/dcor.R | 476 + matrixCorr-0.11.1/matrixCorr/R/deprecated.R | 627 +- matrixCorr-0.11.1/matrixCorr/R/display_utils.R | 87 matrixCorr-0.11.1/matrixCorr/R/icc.R |only matrixCorr-0.11.1/matrixCorr/R/kendall_corr.R | 1070 +-- matrixCorr-0.11.1/matrixCorr/R/latent_corr.R | 2978 ++++++++-- matrixCorr-0.11.1/matrixCorr/R/matrixCorr-package.R | 77 matrixCorr-0.11.1/matrixCorr/R/pbcor.R | 990 ++- matrixCorr-0.11.1/matrixCorr/R/pcorr.R | 988 +-- matrixCorr-0.11.1/matrixCorr/R/pearson_corr.R | 933 ++- matrixCorr-0.11.1/matrixCorr/R/rmcorr.R | 1173 ++- matrixCorr-0.11.1/matrixCorr/R/robust_corr_inference_helpers.R |only matrixCorr-0.11.1/matrixCorr/R/schafer_corr.R | 288 matrixCorr-0.11.1/matrixCorr/R/skipcor.R | 1652 ++--- matrixCorr-0.11.1/matrixCorr/R/spearman_rho.R | 1053 ++- matrixCorr-0.11.1/matrixCorr/R/utils.R | 1060 +++ matrixCorr-0.11.1/matrixCorr/R/view_corr_shiny.R | 104 matrixCorr-0.11.1/matrixCorr/R/view_rmcorr_shiny.R | 3 matrixCorr-0.11.1/matrixCorr/R/wincor.R | 888 ++ matrixCorr-0.11.1/matrixCorr/README.md | 520 - matrixCorr-0.11.1/matrixCorr/build/vignette.rds |only matrixCorr-0.11.1/matrixCorr/inst/doc |only matrixCorr-0.11.1/matrixCorr/man/as.data.frame.corr_edge_list.Rd |only matrixCorr-0.11.1/matrixCorr/man/ba.Rd | 7 matrixCorr-0.11.1/matrixCorr/man/ba_rm.Rd | 52 matrixCorr-0.11.1/matrixCorr/man/bicor.Rd | 118 matrixCorr-0.11.1/matrixCorr/man/biserial.Rd | 84 matrixCorr-0.11.1/matrixCorr/man/cash-.summary.corr_result.Rd |only matrixCorr-0.11.1/matrixCorr/man/ccc.Rd | 41 matrixCorr-0.11.1/matrixCorr/man/ccc_lmm_reml_pairwise.Rd | 11 matrixCorr-0.11.1/matrixCorr/man/ccc_rm_reml.Rd | 78 matrixCorr-0.11.1/matrixCorr/man/ccc_rm_ustat.Rd | 52 matrixCorr-0.11.1/matrixCorr/man/dcor.Rd | 112 matrixCorr-0.11.1/matrixCorr/man/deprecated-matrixCorr.Rd | 31 matrixCorr-0.11.1/matrixCorr/man/dot-ba_rep_two_methods.Rd | 1 matrixCorr-0.11.1/matrixCorr/man/dot-vc_message.Rd | 4 matrixCorr-0.11.1/matrixCorr/man/estimate_rho.Rd | 3 matrixCorr-0.11.1/matrixCorr/man/figures/README-unnamed-chunk-10-1.png |binary matrixCorr-0.11.1/matrixCorr/man/figures/README-unnamed-chunk-10-2.png |binary matrixCorr-0.11.1/matrixCorr/man/figures/README-unnamed-chunk-11-1.png |binary matrixCorr-0.11.1/matrixCorr/man/figures/README-unnamed-chunk-12-1.png |binary matrixCorr-0.11.1/matrixCorr/man/figures/README-unnamed-chunk-13-1.png |binary matrixCorr-0.11.1/matrixCorr/man/figures/README-unnamed-chunk-15-1.png |only matrixCorr-0.11.1/matrixCorr/man/figures/README-unnamed-chunk-3-1.png |binary matrixCorr-0.11.1/matrixCorr/man/figures/README-unnamed-chunk-7-1.png |binary matrixCorr-0.11.1/matrixCorr/man/figures/README-unnamed-chunk-9-1.png |binary matrixCorr-0.11.1/matrixCorr/man/icc.Rd |only matrixCorr-0.11.1/matrixCorr/man/icc_rm_reml.Rd |only matrixCorr-0.11.1/matrixCorr/man/kendall_tau.Rd | 60 matrixCorr-0.11.1/matrixCorr/man/matrixCorr-package.Rd | 3 matrixCorr-0.11.1/matrixCorr/man/pbcor.Rd | 173 matrixCorr-0.11.1/matrixCorr/man/pcorr.Rd | 58 matrixCorr-0.11.1/matrixCorr/man/pearson_corr.Rd | 63 matrixCorr-0.11.1/matrixCorr/man/plot.corr_edge_list.Rd |only matrixCorr-0.11.1/matrixCorr/man/plot.corr_matrix.Rd |only matrixCorr-0.11.1/matrixCorr/man/plot.corr_packed_upper.Rd |only matrixCorr-0.11.1/matrixCorr/man/plot.corr_sparse.Rd |only matrixCorr-0.11.1/matrixCorr/man/polychoric.Rd | 104 matrixCorr-0.11.1/matrixCorr/man/polyserial.Rd | 70 matrixCorr-0.11.1/matrixCorr/man/print.corr_edge_list.Rd |only matrixCorr-0.11.1/matrixCorr/man/print.corr_packed_upper.Rd |only matrixCorr-0.11.1/matrixCorr/man/print.summary.corr_result.Rd |only matrixCorr-0.11.1/matrixCorr/man/print.summary.latent_corr.Rd |only matrixCorr-0.11.1/matrixCorr/man/print.summary.matrixCorr.Rd |only matrixCorr-0.11.1/matrixCorr/man/rmcorr.Rd | 45 matrixCorr-0.11.1/matrixCorr/man/rmcorr_matrix_methods.Rd | 8 matrixCorr-0.11.1/matrixCorr/man/rmcorr_methods.Rd | 8 matrixCorr-0.11.1/matrixCorr/man/run_cpp.Rd | 3 matrixCorr-0.11.1/matrixCorr/man/shrinkage_corr.Rd |only matrixCorr-0.11.1/matrixCorr/man/skipped_corr.Rd | 68 matrixCorr-0.11.1/matrixCorr/man/spearman_rho.Rd | 57 matrixCorr-0.11.1/matrixCorr/man/sub-sub-.summary.corr_result.Rd |only matrixCorr-0.11.1/matrixCorr/man/summary.ccc_rm_reml.Rd | 9 matrixCorr-0.11.1/matrixCorr/man/summary.corr_edge_list.Rd |only matrixCorr-0.11.1/matrixCorr/man/summary.corr_matrix.Rd |only matrixCorr-0.11.1/matrixCorr/man/summary.corr_packed_upper.Rd |only matrixCorr-0.11.1/matrixCorr/man/summary.corr_sparse.Rd |only matrixCorr-0.11.1/matrixCorr/man/tetrachoric.Rd | 108 matrixCorr-0.11.1/matrixCorr/man/view_corr_shiny.Rd | 2 matrixCorr-0.11.1/matrixCorr/man/wincor.Rd | 117 matrixCorr-0.11.1/matrixCorr/src/Makevars | 3 matrixCorr-0.11.1/matrixCorr/src/Makevars.win | 3 matrixCorr-0.11.1/matrixCorr/src/RcppExports.cpp | 212 matrixCorr-0.11.1/matrixCorr/src/biweight_mid_corr.cpp | 67 matrixCorr-0.11.1/matrixCorr/src/bland_altman.cpp | 6 matrixCorr-0.11.1/matrixCorr/src/bland_altman_repeated.cpp | 5 matrixCorr-0.11.1/matrixCorr/src/ccc_repeated.cpp | 36 matrixCorr-0.11.1/matrixCorr/src/ccc_repeated_mixed_model.cpp | 187 matrixCorr-0.11.1/matrixCorr/src/concordance_corr.cpp | 71 matrixCorr-0.11.1/matrixCorr/src/distance_correlation.cpp | 278 matrixCorr-0.11.1/matrixCorr/src/icc.cpp |only matrixCorr-0.11.1/matrixCorr/src/kendall_corr.cpp | 2 matrixCorr-0.11.1/matrixCorr/src/matrixCorr_r_api_compat.h |only matrixCorr-0.11.1/matrixCorr/src/pearson.cpp | 323 - matrixCorr-0.11.1/matrixCorr/src/robust_correlations.cpp | 130 matrixCorr-0.11.1/matrixCorr/src/spearman.cpp | 85 matrixCorr-0.11.1/matrixCorr/src/tetrachoric.cpp | 443 + matrixCorr-0.11.1/matrixCorr/src/threshold_triplets.h |only matrixCorr-0.11.1/matrixCorr/src/validate_corr_input.cpp | 83 matrixCorr-0.11.1/matrixCorr/tests/testthat/Rplots.pdf |only matrixCorr-0.11.1/matrixCorr/tests/testthat/test_bicor.R | 225 matrixCorr-0.11.1/matrixCorr/tests/testthat/test_bland_altman.R | 56 matrixCorr-0.11.1/matrixCorr/tests/testthat/test_bland_altman_repeated.R | 106 matrixCorr-0.11.1/matrixCorr/tests/testthat/test_ccc_repeated.R | 112 matrixCorr-0.11.1/matrixCorr/tests/testthat/test_concordance.R | 45 matrixCorr-0.11.1/matrixCorr/tests/testthat/test_corr_result_s3_dispatch.R |only matrixCorr-0.11.1/matrixCorr/tests/testthat/test_dcor.R | 171 matrixCorr-0.11.1/matrixCorr/tests/testthat/test_deprecated_api.R | 4 matrixCorr-0.11.1/matrixCorr/tests/testthat/test_display_methods.R | 7 matrixCorr-0.11.1/matrixCorr/tests/testthat/test_icc.R |only matrixCorr-0.11.1/matrixCorr/tests/testthat/test_kendall.R | 21 matrixCorr-0.11.1/matrixCorr/tests/testthat/test_latent_corr.R | 466 + matrixCorr-0.11.1/matrixCorr/tests/testthat/test_output_modes_corr_methods.R |only matrixCorr-0.11.1/matrixCorr/tests/testthat/test_pcorr.R | 6 matrixCorr-0.11.1/matrixCorr/tests/testthat/test_pearson_corr.R | 42 matrixCorr-0.11.1/matrixCorr/tests/testthat/test_rmcorr.R | 71 matrixCorr-0.11.1/matrixCorr/tests/testthat/test_robust_extra.R | 218 matrixCorr-0.11.1/matrixCorr/tests/testthat/test_s3_dispatch_all_corr_combinations.R |only matrixCorr-0.11.1/matrixCorr/tests/testthat/test_s3_dispatch_bruteforce_method_args.R |only matrixCorr-0.11.1/matrixCorr/tests/testthat/test_schafer_corr.R | 47 matrixCorr-0.11.1/matrixCorr/tests/testthat/test_spearman_rho.R | 21 matrixCorr-0.11.1/matrixCorr/tests/testthat/test_summary_methods.R | 21 matrixCorr-0.11.1/matrixCorr/tests/testthat/test_view_corr_shiny.R | 38 matrixCorr-0.11.1/matrixCorr/vignettes |only 137 files changed, 16338 insertions(+), 7029 deletions(-)
Title: Make Symmetric and Asymmetric ARDL Estimations
Description: Implements estimation procedures for Autoregressive Distributed Lag (ARDL)
and Nonlinear ARDL (NARDL) models, which allow researchers to investigate both
short- and long-run relationships in time series data under mixed orders of integration.
The package supports simultaneous modeling of symmetric and asymmetric regressors,
flexible treatment of short-run and long-run asymmetries, and automated equation handling.
It includes several cointegration testing approaches such as the Pesaran-Shin-Smith F
and t bounds tests, and narayan test.
Methodological foundations are provided in Pesaran, Shin, and Smith (2001)
<doi:10.1016/S0304-4076(01)00049-5> and Shin, Yu, and Greenwood-Nimmo (2014, ISBN:9780123855079).
Author: Huseyin Karamelikli [aut, cre] ,
Huseyin Utku Demir [aut]
Maintainer: Huseyin Karamelikli <hakperest@gmail.com>
Diff between kardl versions 1.1.0 dated 2026-03-09 and 1.3.0 dated 2026-04-18
DESCRIPTION | 10 MD5 | 46 ++-- NAMESPACE | 2 NEWS.md | 29 ++ R/kardl.R | 238 +++++++---------------- R/longrun.R | 114 +++++------ R/multipliers.R | 404 +++++++++++++++++++++++----------------- R/prepare.R | 46 ---- R/print.R | 91 ++++++++- R/tests.R | 515 +++++++++++++++++++++++++++++++++++---------------- README.md | 10 build/vignette.rds |binary inst/doc/intro.R | 2 inst/doc/intro.Rmd | 4 inst/doc/intro.html | 132 ++++++------- man/ecm.Rd | 11 - man/kardl.Rd | 26 ++ man/kardl_longrun.Rd | 9 man/mplier.Rd | 114 ++++++++--- man/narayan.Rd | 17 - man/pssf.Rd | 17 - man/psst.Rd | 2 man/symmetrytest.Rd | 99 ++++++--- vignettes/intro.Rmd | 4 24 files changed, 1159 insertions(+), 783 deletions(-)
Title: Penalized Regression with Hierarchical Nested Parameterization
Structure
Description: Efficient implementation of penalized regression with hierarchical nested parametrization for grouped data. The package provides penalized regression methods that decompose subgroup specific effects into shared global effects, Major subgroup specific effects, and Minor subgroup specific effects, enabling structured borrowing of information across related clinical subgroups. Both lasso and hierarchical overlapping group lasso penalties are supported to encourage sparsity while respecting the nested subgroup structure. Efficient computation is achieved through a modified design matrix representation and a custom algorithm for overlapping group penalties.
Author: Ziren Jiang [aut, cre],
Jared Huling [aut],
Jue Hou [aut],
Lingfeng Huo [aut],
Daniel J. McDonald [ctb],
Xiaoxuan Liang [ctb],
Anibal Solon Heinsfeld [ctb],
Aaron Cohen [ctb],
Yi Yang [ctb],
Hui Zou [ctb],
Jerome Friedman [ctb],
Trevor Hastie [ctb],
[...truncated...]
Maintainer: Ziren Jiang <jian0746@umn.edu>
This is a re-admission after prior archival of version 1.0.0 dated 2026-03-24
Diff between hierNest versions 1.0.0 dated 2026-03-24 and 1.0.2 dated 2026-04-18
DESCRIPTION | 18 - MD5 | 26 - NAMESPACE | 4 R/coef.cv.hierNest.R |only R/plot_contribution.R |only README.md | 44 +- inst/doc/hierNest_vignette.html | 12 man/coef.cv.hierNest.Rd |only man/figures/README-unnamed-chunk-5-1.png |only man/figures/README-unnamed-chunk-5-2.png |only man/hierNest-package.Rd | 4 man/plot_contribution.Rd |only src/Makevars | 23 - src/sgl_subfuns.f90 | 9 src/sparsegl.f90 | 8 src/sparsegl_init.c | 501 +++++++++++++++++-------------- src/sparsegllog.f90 | 8 17 files changed, 371 insertions(+), 286 deletions(-)
Title: Additional Functions for Model Tuning
Description: The ability to tune models is important. 'finetune' enhances
the 'tune' package by providing more specialized methods for finding
reasonable values of model tuning parameters. Two racing methods
described by Kuhn (2014) <doi:10.48550/arXiv.1405.6974> are included.
An iterative search method using generalized simulated annealing
(Bohachevsky, Johnson and Stein, 1986)
<doi:10.1080/00401706.1986.10488128> is also included.
Author: Max Kuhn [aut, cre] ,
Posit Software, PBC [cph, fnd]
Maintainer: Max Kuhn <max@posit.co>
Diff between finetune versions 1.2.1 dated 2025-05-20 and 1.3.0 dated 2026-04-18
DESCRIPTION | 22 +- MD5 | 61 ++++---- NAMESPACE | 1 NEWS.md | 8 + R/control_race.R | 37 ++-- R/control_sim_anneal.R | 63 ++------ R/finetune-package.R | 1 R/import-standalone-obj-type.R |only R/import-standalone-types-check.R |only R/racing_helpers.R | 9 + R/sim_anneal_helpers.R | 19 +- R/tune_race_anova.R | 15 + R/tune_race_win_loss.R | 5 build/partial.rdb |binary inst/WORDLIST | 2 man/control_race.Rd | 7 man/control_sim_anneal.Rd | 7 man/finetune-package.Rd | 2 man/tune_race_anova.Rd | 3 man/tune_race_win_loss.Rd | 6 tests/testthat/_snaps/anova-overall.md | 14 + tests/testthat/_snaps/race-control.md | 162 ++++++++++++++++++--- tests/testthat/_snaps/sa-control.md | 168 +++++++++++++++++++--- tests/testthat/_snaps/sa-misc.md | 32 ++-- tests/testthat/_snaps/sa-overall.md | 249 +++------------------------------ tests/testthat/helper.R | 22 +- tests/testthat/test-anova-overall.R | 6 tests/testthat/test-race-control.R | 41 +++-- tests/testthat/test-resample-weights.R |only tests/testthat/test-sa-control.R | 46 +++--- tests/testthat/test-sa-misc.R | 25 +++ tests/testthat/test-sa-overall.R | 123 +++++++++------- tests/testthat/test-win-loss-overall.R | 5 33 files changed, 651 insertions(+), 510 deletions(-)
Title: Treatment of Zeros, Left-Censored and Missing Values in
Compositional Data Sets
Description: Principled methods for the imputation of zeros, left-censored and missing data in
compositional data sets (Palarea-Albaladejo and Martin-Fernandez (2015) <doi:10.1016/j.chemolab.2015.02.019>).
Author: Javier Palarea-Albaladejo [cre, aut] ,
Josep Antoni Martin-Fernandez [aut]
Maintainer: Javier Palarea-Albaladejo <javier.palarea@udg.edu>
Diff between zCompositions versions 1.6.0 dated 2026-01-20 and 1.6.1 dated 2026-04-18
DESCRIPTION | 8 MD5 | 32 +-- NEWS | 5 R/cmultRepl.R | 47 ++-- R/lrDA.R | 16 - R/lrEM.R | 78 +++---- R/lrEMplus.R | 86 +++----- R/lrSVD.R | 270 +++++++++----------------- R/lrSVDplus.R | 8 R/multKM.R | 44 +--- R/multLN.R | 154 +++++---------- R/multRepl.R | 89 +++----- R/multReplus.R | 79 +++---- R/perLog.R | 572 +++++++++++++++++++++++---------------------------------- R/splineKM.R | 110 +++++----- R/zPatterns.R | 300 ++++++++++++++--------------- man/lrSVD.Rd | 2 17 files changed, 803 insertions(+), 1097 deletions(-)
Title: Soundscape Background Noise, Power, and Saturation
Description: Accessible and flexible implementation of three ecoacoustic indices that are less commonly available in existing R frameworks: Background Noise, Soundscape Power and Soundscape Saturation. The functions were design to accommodate a variety of sampling designs. Users can tailor calculations by specifying spectrogram time bin size, amplitude thresholds and normality tests. By simplifying computation and standardizing reproducible methods, the package aims to support ecoacoustics studies. For more details about the indices read Towsey (2017) <https://eprints.qut.edu.au/110634/> and Burivalova (2017) <doi:10.1111/cobi.12968>.
Author: Arthur Igor da Fonseca-Freire [aut, cre, cph],
Weslley Geremias dos Santos [aut],
Lucas Rodriguez Forti [aut]
Maintainer: Arthur Igor da Fonseca-Freire <arthur.igorr@gmail.com>
Diff between Ruido versions 1.0.2 dated 2026-02-05 and 1.0.3 dated 2026-04-18
Ruido-1.0.2/Ruido/R/getSampleBins.R |only Ruido-1.0.2/Ruido/R/processChannel.R |only Ruido-1.0.3/Ruido/DESCRIPTION | 12 - Ruido-1.0.3/Ruido/MD5 | 46 +++-- Ruido-1.0.3/Ruido/NAMESPACE | 12 + Ruido-1.0.3/Ruido/R/activity.R | 142 +++++++--------- Ruido-1.0.3/Ruido/R/bgNoise.R | 153 +++++++----------- Ruido-1.0.3/Ruido/R/data.R |only Ruido-1.0.3/Ruido/R/globals.R | 3 Ruido-1.0.3/Ruido/R/internalFunctions.R |only Ruido-1.0.3/Ruido/R/multActivity.R | 87 ++++------ Ruido-1.0.3/Ruido/R/noise.matrix.R |only Ruido-1.0.3/Ruido/R/satBackup.R | 63 +++---- Ruido-1.0.3/Ruido/R/singleSat.R | 120 +++++++++----- Ruido-1.0.3/Ruido/R/soundMat.R | 90 ++++------ Ruido-1.0.3/Ruido/R/soundSat.R | 131 ++++----------- Ruido-1.0.3/Ruido/README.md | 19 +- Ruido-1.0.3/Ruido/data |only Ruido-1.0.3/Ruido/man/activity.Rd | 61 ++----- Ruido-1.0.3/Ruido/man/bgNoise.Rd | 126 +++++--------- Ruido-1.0.3/Ruido/man/multActivity.Rd | 19 +- Ruido-1.0.3/Ruido/man/noise.matrix-class.Rd |only Ruido-1.0.3/Ruido/man/plot-noise.matrix-ANY-method.Rd |only Ruido-1.0.3/Ruido/man/plotBGN.Rd |only Ruido-1.0.3/Ruido/man/sampleBGN.Rd |only Ruido-1.0.3/Ruido/man/satBackup.Rd | 10 - Ruido-1.0.3/Ruido/man/singleSat.Rd | 58 +++++- Ruido-1.0.3/Ruido/man/soundMat.Rd | 28 +-- Ruido-1.0.3/Ruido/man/soundSat.Rd | 15 + 29 files changed, 556 insertions(+), 639 deletions(-)
Title: Cross-Platform File System Operations Based on 'libuv'
Description: A cross-platform interface to file system operations, built
on top of the 'libuv' C library.
Author: Jim Hester [aut],
Hadley Wickham [aut],
Gabor Csardi [aut],
Jeroen Ooms [cre],
libuv project contributors [cph] ,
Joyent, Inc. and other Node contributors [cph] ,
Posit Software, PBC [cph, fnd]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>
Diff between fs versions 2.0.1 dated 2026-03-24 and 2.1.0 dated 2026-04-18
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 9 +++++++++ configure | 18 +++++------------- inst/WORDLIST | 10 ++++++++++ 5 files changed, 31 insertions(+), 20 deletions(-)
Title: Muscle Near-Infrared Spectroscopy Processing and Analysis
Description: Read, process, and analyse data from muscle near-infrared
spectroscopy (mNIRS) devices. Import raw data from .csv or .xls(x)
files and return time-series data and metadata. Includes standardised
methods for cleaning, filtering, and pre-processing mNIRS data for
subsequent analysis. Also includes a custom plot theme and colour
palette. Intended for mNIRS researchers and practitioners in exercise
physiology, sports science, and clinical rehabilitation with minimal
coding experience required.
Author: Jem Arnold [aut, cre, cph]
Maintainer: Jem Arnold <jem.arnold@gmail.com>
Diff between mnirs versions 0.6.0 dated 2026-03-30 and 0.6.2 dated 2026-04-18
mnirs-0.6.0/mnirs/man/figures/README-unnamed-chunk-10-1.png |only mnirs-0.6.0/mnirs/man/figures/README-unnamed-chunk-2-1.png |only mnirs-0.6.0/mnirs/man/figures/README-unnamed-chunk-4-1.png |only mnirs-0.6.0/mnirs/man/figures/README-unnamed-chunk-5-1.png |only mnirs-0.6.0/mnirs/man/figures/README-unnamed-chunk-6-1.png |only mnirs-0.6.0/mnirs/man/figures/README-unnamed-chunk-7-1.png |only mnirs-0.6.0/mnirs/man/figures/README-unnamed-chunk-8-1.png |only mnirs-0.6.0/mnirs/man/figures/README-unnamed-chunk-9-1.png |only mnirs-0.6.2/mnirs/DESCRIPTION | 6 mnirs-0.6.2/mnirs/MD5 | 122 +-- mnirs-0.6.2/mnirs/NEWS.md | 66 + mnirs-0.6.2/mnirs/R/data.R | 8 mnirs-0.6.2/mnirs/R/extract_interval_helpers.R | 9 mnirs-0.6.2/mnirs/R/extract_intervals.R | 26 mnirs-0.6.2/mnirs/R/filter_mnirs.R | 55 - mnirs-0.6.2/mnirs/R/plot.mnirs.R | 57 - mnirs-0.6.2/mnirs/R/read_mnirs.R | 44 - mnirs-0.6.2/mnirs/R/read_mnirs_helpers.R | 110 +- mnirs-0.6.2/mnirs/R/replace_mnirs.R | 53 - mnirs-0.6.2/mnirs/R/resample_mnirs.R | 52 - mnirs-0.6.2/mnirs/R/rescale_mnirs.R | 21 mnirs-0.6.2/mnirs/R/shift_mnirs.R | 17 mnirs-0.6.2/mnirs/R/validate_mnirs.R | 50 - mnirs-0.6.2/mnirs/README.md | 128 +-- mnirs-0.6.2/mnirs/build/vignette.rds |binary mnirs-0.6.2/mnirs/inst/doc/reading-mnirs-data.R | 92 +- mnirs-0.6.2/mnirs/inst/doc/reading-mnirs-data.html | 327 ++++---- mnirs-0.6.2/mnirs/inst/doc/reading-mnirs-data.qmd | 257 +++--- mnirs-0.6.2/mnirs/inst/extdata/train.red_intervals.csv | 386 ++++------ mnirs-0.6.2/mnirs/man/compute_helpers.Rd | 4 mnirs-0.6.2/mnirs/man/extract_intervals.Rd | 9 mnirs-0.6.2/mnirs/man/figures/README-extract_intervals_distinct-1.png |only mnirs-0.6.2/mnirs/man/figures/README-extract_intervals_ensemble-1.png |only mnirs-0.6.2/mnirs/man/figures/README-filter_mnirs-1.png |only mnirs-0.6.2/mnirs/man/figures/README-pipeline-1.png |only mnirs-0.6.2/mnirs/man/figures/README-read_mnirs-1.png |only mnirs-0.6.2/mnirs/man/figures/README-replace_mnirs-1.png |only mnirs-0.6.2/mnirs/man/figures/README-rescale_mnirs-1.png |only mnirs-0.6.2/mnirs/man/figures/README-shift_mnirs-1.png |only mnirs-0.6.2/mnirs/man/filter_ma.Rd | 4 mnirs-0.6.2/mnirs/man/filter_mnirs.Rd | 12 mnirs-0.6.2/mnirs/man/localise_POSIXct.Rd |only mnirs-0.6.2/mnirs/man/mnirs_metadata.Rd |only mnirs-0.6.2/mnirs/man/moxy_ramp.xlsx.Rd | 2 mnirs-0.6.2/mnirs/man/replace_mnirs.Rd | 16 mnirs-0.6.2/mnirs/man/resample_mnirs.Rd | 33 mnirs-0.6.2/mnirs/man/rescale_mnirs.Rd | 2 mnirs-0.6.2/mnirs/man/shift_mnirs.Rd | 2 mnirs-0.6.2/mnirs/man/train.red_intervals.csv.Rd | 6 mnirs-0.6.2/mnirs/man/validate_mnirs.Rd | 16 mnirs-0.6.2/mnirs/tests/testthat/test-extract_intervals.R | 94 ++ mnirs-0.6.2/mnirs/tests/testthat/test-filter_mnirs.R | 133 +-- mnirs-0.6.2/mnirs/tests/testthat/test-plot.mnirs.R | 29 mnirs-0.6.2/mnirs/tests/testthat/test-read_mnirs.R | 52 - mnirs-0.6.2/mnirs/tests/testthat/test-replace_mnirs.R | 25 mnirs-0.6.2/mnirs/tests/testthat/test-resample_mnirs.R | 28 mnirs-0.6.2/mnirs/tests/testthat/test-rescale_mnirs.R | 57 + mnirs-0.6.2/mnirs/tests/testthat/test-shift_mnirs.R | 120 ++- mnirs-0.6.2/mnirs/tests/testthat/test-validate_mnirs.R | 22 mnirs-0.6.2/mnirs/vignettes/_extensions |only mnirs-0.6.2/mnirs/vignettes/reading-mnirs-data.qmd | 257 +++--- 61 files changed, 1612 insertions(+), 1197 deletions(-)
Title: R Interface to 'FFIEC Central Data Repository REST API' Service
Description: Provides a simplified interface to the Central Data Repository 'REST
API' service made available by the United States Federal Financial
Institutions Examination Council ('FFIEC'). Contains functions to retrieve
reports of Condition and Income (Call Reports) and Uniform Bank Performance
Reports ('UBPR') in list or tidy data frame format for most 'FDIC' insured
institutions. See
<https://cdr.ffiec.gov/public/Files/SIS611_-_Retrieve_Public_Data_via_Web_Service.pdf>
for the official 'REST API' documentation published by the 'FFIEC'.
Author: Michael Thomas [aut, cre],
Ketchbrook Analytics [cph, fnd],
Dylan Hughes [ctb]
Maintainer: Michael Thomas <mthomas@ketchbrookanalytics.com>
Diff between ffiec versions 0.1.3 dated 2025-10-25 and 0.2.0 dated 2026-04-18
DESCRIPTION | 16 LICENSE | 2 MD5 | 52 +- NAMESPACE | 24 - NEWS.md | 68 +-- R/aaa.R | 277 ++++++++++--- R/facsimile.R | 310 ++++++++------ R/filers.R | 189 ++++---- R/filers_submission_datetime.R | 55 +- R/panel_reporters.R | 177 +++----- R/reporting_periods.R | 223 ++++------ README.md | 248 +++++------ build |only inst |only man/get_facsimile.Rd | 158 ++++--- man/get_filers_since_date.Rd | 147 +++--- man/get_filers_submission_datetime.Rd | 149 +++--- man/get_panel_of_reporters.Rd | 119 ++--- man/get_reporting_periods.Rd | 108 ++--- man/no_creds_available.Rd | 58 +- tests/testthat.R | 24 - tests/testthat/test-aaa.R |only tests/testthat/test-facsimile.R | 490 +++++++++++++---------- tests/testthat/test-filers_since_date.R | 174 +++----- tests/testthat/test-filers_submission_datetime.R | 184 ++++---- tests/testthat/test-panel_reporters.R | 188 ++++---- tests/testthat/test-reporting_periods.R | 226 ++++------ vignettes |only 28 files changed, 1944 insertions(+), 1722 deletions(-)
Title: Powerful 'SAS' Inspired Concepts for more Efficient Bigger
Outputs
Description: The main goal is to make descriptive evaluations easier to create bigger and more complex outputs in less time with less code. Introducing format containers with multilabels <https://documentation.sas.com/doc/en/pgmsascdc/v_067/proc/p06ciqes4eaqo6n0zyqtz9p21nfb.htm>, a more powerful summarise which is capable to output every possible combination of the provided grouping variables in one go <https://documentation.sas.com/doc/en/pgmsascdc/v_067/proc/p0jvbbqkt0gs2cn1lo4zndbqs1pe.htm>, tabulation functions which can create any table in different styles <https://documentation.sas.com/doc/en/pgmsascdc/v_067/proc/n1ql5xnu0k3kdtn11gwa5hc7u435.htm> and other more readable functions. The code is optimized to work fast even with datasets of over a million observations.
Author: Tim Siebenmorgen [aut, cre, cph]
Maintainer: Tim Siebenmorgen <qol_package@proton.me>
Diff between qol versions 1.2.2 dated 2026-03-10 and 1.3.0 dated 2026-04-18
qol-1.2.2/qol/tests/testthat |only qol-1.2.2/qol/tests/testthat.R |only qol-1.3.0/qol/DESCRIPTION | 16 qol-1.3.0/qol/MD5 | 216 qol-1.3.0/qol/NAMESPACE | 29 qol-1.3.0/qol/NEWS.md | 104 qol-1.3.0/qol/R/any_table.R | 5894 ++++++++++---------- qol-1.3.0/qol/R/apply_format.R | 312 - qol-1.3.0/qol/R/build_master.R | 83 qol-1.3.0/qol/R/build_rstheme.R | 7 qol-1.3.0/qol/R/compute.R |only qol-1.3.0/qol/R/content_report.R | 111 qol-1.3.0/qol/R/conversion.R | 656 +- qol-1.3.0/qol/R/create_format.R | 53 qol-1.3.0/qol/R/crosstabs.R | 132 qol-1.3.0/qol/R/dummy_data.R | 757 +- qol-1.3.0/qol/R/error_handling.R | 28 qol-1.3.0/qol/R/excel_helpers.R | 492 + qol-1.3.0/qol/R/export_with_style.R | 100 qol-1.3.0/qol/R/free_memory.R | 19 qol-1.3.0/qol/R/frequencies.R | 88 qol-1.3.0/qol/R/globals.R | 75 qol-1.3.0/qol/R/if_else.R | 1324 +++- qol-1.3.0/qol/R/import_export.R | 1169 ++- qol-1.3.0/qol/R/internal.R | 43 qol-1.3.0/qol/R/keep_drop.R | 37 qol-1.3.0/qol/R/loading.R | 671 ++ qol-1.3.0/qol/R/macro.R | 17 qol-1.3.0/qol/R/messages.R |only qol-1.3.0/qol/R/monitor.R | 3 qol-1.3.0/qol/R/multi_join.R | 66 qol-1.3.0/qol/R/options.R | 259 qol-1.3.0/qol/R/qol.R | 20 qol-1.3.0/qol/R/recode.R | 511 - qol-1.3.0/qol/R/renaming.R | 719 +- qol-1.3.0/qol/R/retain.R | 60 qol-1.3.0/qol/R/small_helpers.R | 181 qol-1.3.0/qol/R/sort_plus.R | 53 qol-1.3.0/qol/R/split_by.R | 50 qol-1.3.0/qol/R/statistics.R | 1080 +-- qol-1.3.0/qol/R/strings.R | 40 qol-1.3.0/qol/R/summarise_plus.R | 132 qol-1.3.0/qol/R/tinytest_reporter.R |only qol-1.3.0/qol/R/transpose_plus.R | 65 qol-1.3.0/qol/R/variable_selection.R | 12 qol-1.3.0/qol/README.md | 78 qol-1.3.0/qol/inst/extdata/qol_example_data_fst.fst |only qol-1.3.0/qol/inst/extdata/qol_example_data_rds.rds |only qol-1.3.0/qol/inst/extdata/qol_example_data_txt.txt |only qol-1.3.0/qol/inst/extdata/qol_tinytest_results.fst |only qol-1.3.0/qol/inst/tinytest |only qol-1.3.0/qol/man/any_table.Rd | 150 qol-1.3.0/qol/man/build_master.Rd | 6 qol-1.3.0/qol/man/combine_into_workbook.Rd | 14 qol-1.3.0/qol/man/compute.Rd |only qol-1.3.0/qol/man/crosstabs.Rd | 48 qol-1.3.0/qol/man/do_if.Rd |only qol-1.3.0/qol/man/dummy_data.Rd | 62 qol-1.3.0/qol/man/excel_output_style.Rd | 4 qol-1.3.0/qol/man/export_with_style.Rd | 51 qol-1.3.0/qol/man/figures/logo.png |binary qol-1.3.0/qol/man/figures/messages.png |only qol-1.3.0/qol/man/figures/monitor.png |binary qol-1.3.0/qol/man/figures/output.png |binary qol-1.3.0/qol/man/figures/tabulation.png |binary qol-1.3.0/qol/man/figures/theme.png |binary qol-1.3.0/qol/man/frequencies.Rd | 25 qol-1.3.0/qol/man/hex_ansi.Rd |only qol-1.3.0/qol/man/if_else.Rd | 65 qol-1.3.0/qol/man/import_export.Rd | 26 qol-1.3.0/qol/man/libname.Rd | 7 qol-1.3.0/qol/man/macro.Rd | 5 qol-1.3.0/qol/man/message_helpers.Rd |only qol-1.3.0/qol/man/messages.Rd |only qol-1.3.0/qol/man/qol-package.Rd | 22 qol-1.3.0/qol/man/qol_chat.Rd |only qol-1.3.0/qol/man/qol_options.Rd | 33 qol-1.3.0/qol/man/reporter.Rd |only qol-1.3.0/qol/man/retain.Rd | 2 qol-1.3.0/qol/man/round_values.Rd | 46 qol-1.3.0/qol/man/row_calculation.Rd |only qol-1.3.0/qol/man/save_load.Rd |only qol-1.3.0/qol/man/sort_plus.Rd | 5 qol-1.3.0/qol/man/style_options.Rd | 16 qol-1.3.0/qol/man/sub_string.Rd | 2 qol-1.3.0/qol/man/summarise_plus.Rd | 9 qol-1.3.0/qol/man/transpose_plus.Rd | 4 qol-1.3.0/qol/man/where..Rd | 11 qol-1.3.0/qol/tests/tinytest.R |only 89 files changed, 9836 insertions(+), 6539 deletions(-)
Title: Descriptive, Reliability, and Inferential Tables for
Psychometric Scales and Demographic Data
Description: Provides functions to format and summarise already computed outputs from commonly used statistical and psychometric functions into compact, single-row tables and simple graphs, with utilities to export results to CSV, Word, and Excel formats. The package does not implement new statistical methods or estimation procedures; instead, it organises and presents results obtained from existing functions such as psych::describe(), psych::alpha(), stats::t.test(), and gtsummary::tbl_summary() to streamline reporting workflows in clinical and psychological research.
Author: Darshankumar Dharaiya [aut, cre]
Maintainer: Darshankumar Dharaiya <dharaiya.darshan@gmail.com>
Diff between scaledescr versions 0.2.4 dated 2026-04-11 and 0.2.5 dated 2026-04-18
DESCRIPTION | 6 +- MD5 | 18 ++++++-- NAMESPACE | 13 ++++++ NEWS.md | 39 ++++++++++++++++++- R/make_EFA_factorability_table.R |only R/make_citation_to_output.R |only R/make_correlation_table.R |only R/make_dataframe_to_output.R | 73 ++++++++++++++++++++++++------------ R/make_normality_table.R |only inst/CITATION | 10 ++-- man/make_EFA_factorability_table.Rd |only man/make_citation_to_output.Rd |only man/make_correlation_table.Rd |only man/make_normality_table.Rd |only 14 files changed, 123 insertions(+), 36 deletions(-)
Title: Calculating Bilateral and Multilateral Price Indexes
Description: Preparing a scanner data set for price dynamics calculations (data selecting, data classification, data matching, data filtering). Computing bilateral and multilateral indexes. For details on these methods see: Diewert and Fox (2020)
<doi:10.1080/07350015.2020.1816176>, Białek (2019) <doi:10.2478/jos-2019-0014> or Białek (2020) <doi:10.2478/jos-2020-0037>.
Author: Jacek Bialek [aut, cre]
Maintainer: Jacek Bialek <jacek.bialek@uni.lodz.pl>
Diff between PriceIndices versions 0.3.0 dated 2026-04-07 and 0.3.1 dated 2026-04-18
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- NEWS.md | 7 +++++++ R/f_chain_indices.R | 2 +- R/f_full_multilateral_indices.R | 2 +- man/m_decomposition.Rd | 2 +- 6 files changed, 18 insertions(+), 11 deletions(-)
Title: Native and Extensible R Driver for 'Zarr'
Description: The 'Zarr' specification is widely used to build libraries for the storage and retrieval of n-dimensional array data from data stores ranging from local file systems to the cloud. This package is a native 'Zarr' implementation in R with support for all required features of 'Zarr' version 3. It is designed to be extensible such that new stores, codecs and extensions can be added easily.
Author: Patrick Van Laake [aut, cre, cph]
Maintainer: Patrick Van Laake <patrick@vanlaake.net>
Diff between zarr versions 0.2.0 dated 2026-02-11 and 0.3.0 dated 2026-04-18
DESCRIPTION | 6 +-- MD5 | 51 +++++++++++++++----------- NAMESPACE | 14 +++++++ NEWS.md | 7 +++ R/api.R | 12 +++--- R/array.R | 82 ++++++++++++++++++++++++------------------ R/array_builder.R | 1 R/convention.R |only R/convention_ref.R |only R/convention_uom.R |only R/domain.R |only R/group.R | 15 ++++--- R/node.R | 38 +++++++++++++++++-- R/store.R | 1 R/store_http.R | 1 R/store_memory.R | 8 ++-- R/utils.R | 51 ++++++++++++++++++++++++++ R/zarr.R | 19 +++++++-- R/zzz.R | 12 +++++- README.md | 16 ++++++-- man/array-indexing.Rd | 12 ++---- man/as_zarr.Rd | 3 + man/zarr.Rd | 3 + man/zarr_array.Rd | 4 +- man/zarr_conv_ref.Rd |only man/zarr_conv_uom.Rd |only man/zarr_convention.Rd |only man/zarr_domain.Rd |only man/zarr_domains.Rd |only man/zarr_node.Rd | 4 +- man/zarr_register_domain.Rd |only man/zarr_unregister_domain.Rd |only 32 files changed, 263 insertions(+), 97 deletions(-)
Title: Bridging Simultaneous Confidence Corridors and PET Neuroimaging
Description: Tools for the structured processing of PET neuroimaging data
in preparation for the estimation of Simultaneous Confidence Corridors (SCCs)
for one-group, two-group, or single-patient vs group comparisons.
The package facilitates PET image loading, data restructuring, integration
into a Functional Data Analysis framework, contour extraction, identification
of significant results, and performance evaluation. It bridges established
packages (e.g., 'oro.nifti') with novel statistical methodologies (e.g.,
'ImageSCC') and enables reproducible analysis pipelines, including
comparison with Statistical Parametric Mapping ('SPM').
Author: Juan A. Arias Lopez [aut, cre, cph] ,
Virgilio Gomez Rubio [rev] ,
Pablo Aguiar Fernandez [ths] ,
Andrew Haddon Kemp [ths]
Maintainer: Juan A. Arias Lopez <iguanamarina@protonmail.com>
Diff between neuroSCC versions 1.0.1 dated 2026-03-25 and 1.0.2 dated 2026-04-18
DESCRIPTION | 11 +-- MD5 | 35 ++++++---- NAMESPACE | 35 +++++----- NEWS.md | 8 ++ R/globals.R | 2 R/plotSCCcomparisonPanel.R |only R/plotSCCpanel.R |only R/plotValidationPanel.R |only R/sccOneGroup.R |only README.md | 115 +++++++++++++++++++++++++++++++++- data/sccOneGroup.rda |only inst/doc/one_vs_group.R | 49 ++++++++++++++ inst/doc/one_vs_group.Rmd | 71 +++++++++++++++++++++ inst/doc/one_vs_group.html | 123 +++++++++++++++++++++++++++++-------- inst/doc/two_group_comparison.R | 41 ++++++++++++ inst/doc/two_group_comparison.Rmd | 56 ++++++++++++++++ inst/doc/two_group_comparison.html | 106 ++++++++++++++++++++++++------- man/plotSCCcomparisonPanel.Rd |only man/plotSCCpanel.Rd |only man/plotValidationPanel.Rd |only man/sccOneGroup.Rd |only vignettes/one_vs_group.Rmd | 71 +++++++++++++++++++++ vignettes/two_group_comparison.Rmd | 56 ++++++++++++++++ 23 files changed, 691 insertions(+), 88 deletions(-)
Title: GCC Estimation of the Multilevel Factor Model
Description: Provides methods for model selection, estimation, inference, and simulation for the
multilevel factor model, based on the principal component estimation and generalised
canonical correlation approach. Details can be found in "Generalised Canonical Correlation
Estimation of the Multilevel Factor Model." Lin and Shin (2025) <doi:10.2139/ssrn.4295429>.
Author: Rui Lin [aut, cre],
Yongcheol Shin [aut]
Maintainer: Rui Lin <ruilin1081@gmail.com>
Diff between GCCfactor versions 1.1.5 dated 2026-04-06 and 1.1.6 dated 2026-04-18
DESCRIPTION | 6 +++--- MD5 | 4 ++-- R/main_functions.R | 4 ++-- 3 files changed, 7 insertions(+), 7 deletions(-)
Title: R Interface to Apache Spark
Description: R interface to Apache Spark, a fast and general
engine for big data processing, see <https://spark.apache.org/>. This
package supports connecting to local and remote Apache Spark clusters,
provides a 'dplyr' compatible back-end, and provides an interface to
Spark's built-in machine learning algorithms.
Author: Javier Luraschi [aut],
Kevin Kuo [aut] ,
Kevin Ushey [aut],
JJ Allaire [aut],
Samuel Macedo [ctb],
Hossein Falaki [aut],
Lu Wang [aut],
Andy Zhang [aut],
Yitao Li [aut] ,
Jozef Hajnala [ctb],
Maciej Szymkiewicz [ctb] ,
Wil Davis [ctb],
Edgar Ruiz [au [...truncated...]
Maintainer: Edgar Ruiz <edgar@rstudio.com>
Diff between sparklyr versions 1.9.3 dated 2025-11-19 and 1.9.4 dated 2026-04-18
DESCRIPTION | 14 +++++++------- MD5 | 21 ++++++++++++--------- NAMESPACE | 3 ++- NEWS.md | 8 ++++++++ R/dplyr_spark_table.R | 2 ++ R/ml_feature_stop_words_remover.R | 2 +- R/mutation.R | 5 ++--- R/tune-grid-spark.R |only inst/extdata/versions-next.json | 6 +++--- inst/extdata/versions.json | 20 +++++++++++++++++++- man/ml_default_stop_words.Rd | 2 +- man/slice_.tbl_spark.Rd |only man/tune_grid_spark.Rd |only 13 files changed, 57 insertions(+), 26 deletions(-)
Title: Interactive Reliability Probability Plots
Description: Build interactive Reliability Probability Plots with 'plotly' by Carson Sievert (2020) <https://plotly.com/r/>, an interactive web-based graphing library.
Author: Paul Govan [aut, cre, cph]
Maintainer: Paul Govan <paul.govan2@gmail.com>
Diff between ReliaPlotR versions 0.4.2 dated 2025-12-18 and 0.5 dated 2026-04-18
DESCRIPTION | 8 - MD5 | 41 +++-- NAMESPACE | 10 + NEWS.md | 15 + R/plotly_alt.R |only R/plotly_duane.R | 63 ++++--- R/plotly_exposure.R |only R/plotly_mcf.R |only R/plotly_nhpp.R |only R/plotly_rel.R |only R/plotly_rga.R | 216 +++++++++++++++++---------- R/plotly_wblr.R | 324 +++++++++++++++++++++++------------------ inst/WORDLIST | 8 - man/plotly_alt.Rd |only man/plotly_duane.Rd | 10 + man/plotly_exposure.Rd |only man/plotly_mcf.Rd |only man/plotly_nhpp.Rd |only man/plotly_rel.Rd |only man/plotly_rga.Rd | 48 ++++-- man/plotly_wblr.Rd | 38 +++- tests/testthat/test-alt.R |only tests/testthat/test-duane.R | 30 +++ tests/testthat/test-exposure.R |only tests/testthat/test-mcf.R |only tests/testthat/test-nhpp.R |only tests/testthat/test-rel.R |only tests/testthat/test-rga.R | 34 ++++ tests/testthat/test-wblr.R | 76 +++++++++ 29 files changed, 630 insertions(+), 291 deletions(-)
Title: Tidy Intensive Longitudinal Data Analysis
Description: A reproducible, tidyverse-style framework for intensive longitudinal
data analysis in R, with built-in methodological safeguards, provenance
tracking, and reporting tools. Encodes time structure, enforces
within-between decomposition, provides spacing-aware lags, and integrates
diagnostics and visualization. Use ild_prepare(), ild_center(), ild_lag(),
and related functions for a unified pipeline from raw EMA/diary data to
interpretable models.
Author: Alex Litovchenko [aut, cre]
Maintainer: Alex Litovchenko <al4877@columbia.edu>
Diff between tidyILD versions 0.3.0 dated 2026-03-11 and 0.4.0 dated 2026-04-17
DESCRIPTION | 48 ++- MD5 | 311 ++++++++++++++++----- NAMESPACE | 104 ++++++- NEWS.md | 158 ++++++++++ R/ild-class.R | 12 R/ild_augment_helpers.R |only R/ild_autoplot_bundle.R |only R/ild_brms.R |only R/ild_brms_dynamics_formula.R |only R/ild_brms_s3.R |only R/ild_compare_fits.R |only R/ild_ctsem.R |only R/ild_ctsem_s3.R |only R/ild_design_check.R | 8 R/ild_diagnose_fillers.R |only R/ild_diagnose_methods.R |only R/ild_diagnostics_bundle.R |only R/ild_diagnostics_utilities.R |only R/ild_generics.R |only R/ild_guardrail_registry.R |only R/ild_heterogeneity.R |only R/ild_ipcw_weights.R |only R/ild_iptw_msm_weights.R |only R/ild_iptw_weights.R |only R/ild_ipw_helpers.R |only R/ild_ipw_refit.R | 8 R/ild_ipw_weights.R | 18 - R/ild_joint_msm_weights.R |only R/ild_kfas.R |only R/ild_kfas_augment.R |only R/ild_kfas_autoplot.R |only R/ild_kfas_diagnose.R |only R/ild_kfas_guardrails.R |only R/ild_kfas_helpers.R |only R/ild_kfas_plot.R |only R/ild_kfas_spec.R |only R/ild_kfas_tidiers.R |only R/ild_lme.R | 20 + R/ild_methods.R | 206 ++++++++++++- R/ild_missing_extensions.R |only R/ild_missing_model.R | 10 R/ild_missing_pattern.R | 27 + R/ild_missingness_report.R |only R/ild_model_tidiers.R | 100 ++++-- R/ild_msm_balance.R |only R/ild_msm_bootstrap.R |only R/ild_msm_contrast.R |only R/ild_msm_estimand.R |only R/ild_msm_fit.R |only R/ild_msm_history.R |only R/ild_msm_simulation.R |only R/ild_panel_lag_prepare.R |only R/ild_plot.R | 167 +++++++++-- R/ild_power.R | 3 R/ild_prepare.R | 57 +++ R/ild_provenance.R | 7 R/ild_recovery_metrics.R |only R/ild_robust_se.R | 9 R/ild_schema_tidy_augment.R |only R/ild_simulate.R | 2 R/ild_spacing_class.R | 4 R/ild_summary.R | 11 R/ild_tidy_helpers.R |only R/ild_tsibble.R |only R/package.R | 68 +++- R/utils.R | 8 README.md | 49 +++ build/vignette.rds |binary inst/CONTRACTS.md |only inst/benchmarks |only inst/dev |only inst/doc/benchmark-simulation-recovery.R |only inst/doc/benchmark-simulation-recovery.Rmd |only inst/doc/benchmark-simulation-recovery.html |only inst/doc/brms-dynamics-recipes.R |only inst/doc/brms-dynamics-recipes.Rmd |only inst/doc/brms-dynamics-recipes.html |only inst/doc/ctsem-continuous-time-dynamics.R |only inst/doc/ctsem-continuous-time-dynamics.Rmd |only inst/doc/ctsem-continuous-time-dynamics.html |only inst/doc/developer-contracts.R |only inst/doc/developer-contracts.Rmd |only inst/doc/developer-contracts.html |only inst/doc/heterogeneity-interpretation.R |only inst/doc/heterogeneity-interpretation.Rmd |only inst/doc/heterogeneity-interpretation.html |only inst/doc/ild-analysis-report.R | 1 inst/doc/ild-analysis-report.Rmd | 1 inst/doc/ild-analysis-report.html | 34 +- inst/doc/ild-decomposition-and-spacing.Rmd | 4 inst/doc/ild-decomposition-and-spacing.html | 10 inst/doc/ild-glossary-and-quickstart.html | 4 inst/doc/ild-missingness-workflow.R |only inst/doc/ild-missingness-workflow.Rmd |only inst/doc/ild-missingness-workflow.html |only inst/doc/ild-provenance.html | 75 ++--- inst/doc/ild-specialist-backends.R |only inst/doc/ild-specialist-backends.Rmd |only inst/doc/ild-specialist-backends.html |only inst/doc/kfas-choosing-backend.R |only inst/doc/kfas-choosing-backend.Rmd |only inst/doc/kfas-choosing-backend.html |only inst/doc/kfas-irregular-timing-spacing.R |only inst/doc/kfas-irregular-timing-spacing.Rmd |only inst/doc/kfas-irregular-timing-spacing.html |only inst/doc/kfas-state-space-modeling.R |only inst/doc/kfas-state-space-modeling.Rmd |only inst/doc/kfas-state-space-modeling.html |only inst/doc/msm-identification-and-recovery.R |only inst/doc/msm-identification-and-recovery.Rmd |only inst/doc/msm-identification-and-recovery.html |only inst/doc/temporal-dynamics-model-choice.R |only inst/doc/temporal-dynamics-model-choice.Rmd |only inst/doc/temporal-dynamics-model-choice.html |only inst/doc/tidyILD-workflow.R | 32 ++ inst/doc/tidyILD-workflow.Rmd | 48 +++ inst/doc/tidyILD-workflow.html | 226 ++++++++++++++- inst/doc/tsibble-interoperability.R |only inst/doc/tsibble-interoperability.Rmd |only inst/doc/tsibble-interoperability.html |only inst/doc/visualization-in-tidyILD.R |only inst/doc/visualization-in-tidyILD.Rmd |only inst/doc/visualization-in-tidyILD.html |only man/augment_ild_model.Rd | 15 - man/guardrail_registry.Rd |only man/ild_as_tsibble.Rd |only man/ild_augment.Rd |only man/ild_augment_schema.Rd |only man/ild_augment_states.Rd |only man/ild_autoplot.Rd |only man/ild_brms.Rd |only man/ild_brms_dynamics_formula.Rd |only man/ild_build_msm_history.Rd |only man/ild_compare_fits.Rd |only man/ild_ctsem.Rd |only man/ild_design_check.Rd | 26 + man/ild_diagnose.Rd |only man/ild_diagnostics_bundle.Rd |only man/ild_diagnostics_utilities.Rd |only man/ild_fit.Rd |only man/ild_heatmap.Rd | 4 man/ild_heterogeneity.Rd |only man/ild_ipcw_weights.Rd |only man/ild_iptw_msm_weights.Rd |only man/ild_iptw_weights.Rd |only man/ild_ipw_ess.Rd |only man/ild_ipw_refit.Rd | 8 man/ild_ipw_weights.Rd | 28 + man/ild_joint_msm_weights.Rd |only man/ild_kfas.Rd |only man/ild_methods.Rd | 12 man/ild_missing_cohort.Rd |only man/ild_missing_compliance.Rd |only man/ild_missing_hazard_first.Rd |only man/ild_missing_model.Rd | 28 + man/ild_missing_pattern.Rd | 43 ++ man/ild_missingness_report.Rd |only man/ild_msm_balance.Rd |only man/ild_msm_balance_topic.Rd |only man/ild_msm_bootstrap.Rd |only man/ild_msm_contrast_over_time.Rd |only man/ild_msm_diagnose.Rd |only man/ild_msm_estimand.Rd |only man/ild_msm_fit.Rd |only man/ild_msm_history_spec.Rd |only man/ild_msm_inference.Rd |only man/ild_msm_overlap_plot.Rd |only man/ild_msm_recovery.Rd |only man/ild_msm_simulate_scenario.Rd |only man/ild_panel_lag_prepare.Rd |only man/ild_plot.Rd | 11 man/ild_plot_filtered_vs_smoothed.Rd |only man/ild_plot_forecast.Rd |only man/ild_plot_predicted_trajectory.Rd |only man/ild_plot_states.Rd |only man/ild_power.Rd | 5 man/ild_prepare.Rd | 26 + man/ild_prior_ild.Rd |only man/ild_recovery_metrics.Rd |only man/ild_report.Rd | 2 man/ild_robust_se.Rd | 10 man/ild_simulate.Rd | 4 man/ild_spacing_class.Rd | 5 man/ild_spaghetti.Rd | 4 man/ild_summary.Rd | 4 man/ild_tidy.Rd |only man/ild_tidy_schema.Rd |only man/ild_tidy_states.Rd |only man/ild_tsibble_meta.Rd |only man/tidyILD-package.Rd | 69 +++- man/tidy_ild_model.Rd | 19 - man/tidy_ild_msm_bootstrap.Rd |only tests/testthat/helper-backend-validation-harness.R |only tests/testthat/helper-contract-fixtures.R |only tests/testthat/helper-ctsem-fixtures.R |only tests/testthat/helper-kfas-fixtures.R |only tests/testthat/helper-msm-fixtures.R |only tests/testthat/test-backend-validation-harness.R |only tests/testthat/test-contract-regression.R |only tests/testthat/test-guardrails-dynamics.R |only tests/testthat/test-guardrails-triggers.R |only tests/testthat/test-heterogeneity-brms.R |only tests/testthat/test-heterogeneity-lmer.R |only tests/testthat/test-ild-compare-fits.R |only tests/testthat/test-ild-ctsem.R |only tests/testthat/test-ild-iptw-ipcw.R |only tests/testthat/test-ild-iptw-msm.R |only tests/testthat/test-ild-missing-module.R |only tests/testthat/test-ild-msm-balance.R |only tests/testthat/test-ild-msm-bootstrap.R |only tests/testthat/test-ild-msm-estimand-fit.R |only tests/testthat/test-ild-msm-history.R |only tests/testthat/test-ild-msm-recovery.R |only tests/testthat/test-ild-panel-lag-prepare.R |only tests/testthat/test-ild_autoplot_bundle.R |only tests/testthat/test-ild_brms.R |only tests/testthat/test-ild_contracts.R |only tests/testthat/test-ild_diagnose_bundle_density.R |only tests/testthat/test-ild_diagnostics_plot.R | 28 + tests/testthat/test-ild_fit.R |only tests/testthat/test-ild_generics.R |only tests/testthat/test-ild_kfas.R |only tests/testthat/test-ild_missing_model_ipw.R | 2 tests/testthat/test-ild_model_tidiers.R | 37 +- tests/testthat/test-ild_prepare.R | 6 tests/testthat/test-ild_recovery_metrics.R |only tests/testthat/test-ild_robust_se.R | 6 tests/testthat/test-ild_tsibble.R |only tests/testthat/test-kfas-extended.R |only tests/testthat/test-tsibble-interop.R |only vignettes/benchmark-simulation-recovery.Rmd |only vignettes/brms-dynamics-recipes.Rmd |only vignettes/ctsem-continuous-time-dynamics.Rmd |only vignettes/developer-contracts.Rmd |only vignettes/heterogeneity-interpretation.Rmd |only vignettes/ild-analysis-report.Rmd | 1 vignettes/ild-decomposition-and-spacing.Rmd | 4 vignettes/ild-missingness-workflow.Rmd |only vignettes/ild-specialist-backends.Rmd |only vignettes/kfas-choosing-backend.Rmd |only vignettes/kfas-irregular-timing-spacing.Rmd |only vignettes/kfas-state-space-modeling.Rmd |only vignettes/msm-identification-and-recovery.Rmd |only vignettes/temporal-dynamics-model-choice.Rmd |only vignettes/tidyILD-workflow.Rmd | 48 +++ vignettes/tsibble-interoperability.Rmd |only vignettes/visualization-in-tidyILD.Rmd |only 247 files changed, 1993 insertions(+), 312 deletions(-)
Title: Compiler for R
Description: Compile R functions annotated with type and shape
declarations for extremely fast performance and robust runtime
type checking. Supports both just-in-time (JIT) and ahead-of-time
(AOT) compilation. Compilation is performed by lowering R code to
Fortran.
Author: Tomasz Kalinowski [aut, cre],
Posit Software, PBC [cph, fnd]
Maintainer: Tomasz Kalinowski <tomasz@posit.co>
Diff between quickr versions 0.2.1 dated 2025-12-06 and 0.3.0 dated 2026-04-17
quickr-0.2.1/quickr/R/r2f.R |only quickr-0.2.1/quickr/tests/testthat/_snaps/add.md |only quickr-0.3.0/quickr/DESCRIPTION | 11 quickr-0.3.0/quickr/MD5 | 229 +++-- quickr-0.3.0/quickr/NAMESPACE | 1 quickr-0.3.0/quickr/NEWS.md | 170 +++ quickr-0.3.0/quickr/R/aaa-utils.R | 103 ++ quickr-0.3.0/quickr/R/c-wrapper.R | 433 ++++++++-- quickr-0.3.0/quickr/R/classes.R | 70 + quickr-0.3.0/quickr/R/compile-package.R | 46 - quickr-0.3.0/quickr/R/compiler.R |only quickr-0.3.0/quickr/R/declare.R |only quickr-0.3.0/quickr/R/error-handling.R |only quickr-0.3.0/quickr/R/manifest.R | 426 +++++++++ quickr-0.3.0/quickr/R/parallel.R |only quickr-0.3.0/quickr/R/preprocess-lang.R | 12 quickr-0.3.0/quickr/R/quick.R | 273 +++++- quickr-0.3.0/quickr/R/r2f-aaa-registry.R |only quickr-0.3.0/quickr/R/r2f-aab-core.R |only quickr-0.3.0/quickr/R/r2f-arithmetic.R |only quickr-0.3.0/quickr/R/r2f-assign.R |only quickr-0.3.0/quickr/R/r2f-closures.R |only quickr-0.3.0/quickr/R/r2f-coercions.R |only quickr-0.3.0/quickr/R/r2f-conditionals.R |only quickr-0.3.0/quickr/R/r2f-constructors.R |only quickr-0.3.0/quickr/R/r2f-control-flow.R |only quickr-0.3.0/quickr/R/r2f-core-handlers.R |only quickr-0.3.0/quickr/R/r2f-dimensions.R |only quickr-0.3.0/quickr/R/r2f-io.R |only quickr-0.3.0/quickr/R/r2f-iterables-helpers.R |only quickr-0.3.0/quickr/R/r2f-logical.R |only quickr-0.3.0/quickr/R/r2f-math.R |only quickr-0.3.0/quickr/R/r2f-matrix-blas.R |only quickr-0.3.0/quickr/R/r2f-matrix-infer.R |only quickr-0.3.0/quickr/R/r2f-matrix-parse.R |only quickr-0.3.0/quickr/R/r2f-matrix.R |only quickr-0.3.0/quickr/R/r2f-operators-helpers.R |only quickr-0.3.0/quickr/R/r2f-random.R |only quickr-0.3.0/quickr/R/r2f-reductions-helpers.R |only quickr-0.3.0/quickr/R/r2f-reductions.R |only quickr-0.3.0/quickr/R/r2f-rev.R |only quickr-0.3.0/quickr/R/r2f-sequences.R |only quickr-0.3.0/quickr/R/r2f-subscript.R |only quickr-0.3.0/quickr/R/scope-helpers.R |only quickr-0.3.0/quickr/R/scope.R | 129 ++ quickr-0.3.0/quickr/R/sizes.R | 166 ++- quickr-0.3.0/quickr/R/subroutine.R | 208 ++-- quickr-0.3.0/quickr/R/zzz.R | 6 quickr-0.3.0/quickr/README.md | 339 ++++++- quickr-0.3.0/quickr/man/declare.Rd |only quickr-0.3.0/quickr/man/figures/README-unnamed-chunk-10-1.png |only quickr-0.3.0/quickr/man/figures/README-unnamed-chunk-11-1.png |only quickr-0.3.0/quickr/man/figures/README-unnamed-chunk-3-1.png |binary quickr-0.3.0/quickr/man/figures/README-unnamed-chunk-6-1.png |binary quickr-0.3.0/quickr/man/figures/README-unnamed-chunk-7-1.png |binary quickr-0.3.0/quickr/man/figures/README-unnamed-chunk-8-1.png |binary quickr-0.3.0/quickr/man/quick.Rd | 21 quickr-0.3.0/quickr/tests/testthat.R | 14 quickr-0.3.0/quickr/tests/testthat/_snaps/allocatable-locals.md |only quickr-0.3.0/quickr/tests/testthat/_snaps/bind.md |only quickr-0.3.0/quickr/tests/testthat/_snaps/block-scopes.md |only quickr-0.3.0/quickr/tests/testthat/_snaps/c-bridge-hoist.md |only quickr-0.3.0/quickr/tests/testthat/_snaps/closure-hoist-snapshots.md |only quickr-0.3.0/quickr/tests/testthat/_snaps/dims2c-length.md |only quickr-0.3.0/quickr/tests/testthat/_snaps/dims2f.md | 15 quickr-0.3.0/quickr/tests/testthat/_snaps/drop.md |only quickr-0.3.0/quickr/tests/testthat/_snaps/error-handling.md |only quickr-0.3.0/quickr/tests/testthat/_snaps/errors.md |only quickr-0.3.0/quickr/tests/testthat/_snaps/example-heat_diffusion.md | 382 +++++++- quickr-0.3.0/quickr/tests/testthat/_snaps/example-roll_mean.md | 4 quickr-0.3.0/quickr/tests/testthat/_snaps/example-viterbi.md | 42 quickr-0.3.0/quickr/tests/testthat/_snaps/float-to-int.md |only quickr-0.3.0/quickr/tests/testthat/_snaps/local-closure-control-flow.md |only quickr-0.3.0/quickr/tests/testthat/_snaps/logical-indexing.md |only quickr-0.3.0/quickr/tests/testthat/_snaps/logical.md | 171 +++ quickr-0.3.0/quickr/tests/testthat/_snaps/machine.md |only quickr-0.3.0/quickr/tests/testthat/_snaps/matrix.md | 8 quickr-0.3.0/quickr/tests/testthat/_snaps/openmp-error-snapshots.md |only quickr-0.3.0/quickr/tests/testthat/_snaps/parentheses.md |only quickr-0.3.0/quickr/tests/testthat/_snaps/qr-solve.md |only quickr-0.3.0/quickr/tests/testthat/_snaps/runif.md | 9 quickr-0.3.0/quickr/tests/testthat/_snaps/sapply-closures.md |only quickr-0.3.0/quickr/tests/testthat/_snaps/superassignment-snapshots.md |only quickr-0.3.0/quickr/tests/testthat/_snaps/svd.md |only quickr-0.3.0/quickr/tests/testthat/_snaps/unary-intrinsics.md | 136 +++ quickr-0.3.0/quickr/tests/testthat/_snaps/which.md | 6 quickr-0.3.0/quickr/tests/testthat/helper.R | 98 ++ quickr-0.3.0/quickr/tests/testthat/test-add.R | 36 quickr-0.3.0/quickr/tests/testthat/test-allocatable-locals.R |only quickr-0.3.0/quickr/tests/testthat/test-api-drives-internals.R |only quickr-0.3.0/quickr/tests/testthat/test-arg-not-declared-name-collision.R |only quickr-0.3.0/quickr/tests/testthat/test-array-reshape.R |only quickr-0.3.0/quickr/tests/testthat/test-as-double.R | 18 quickr-0.3.0/quickr/tests/testthat/test-assignment-writes-to-dest.R |only quickr-0.3.0/quickr/tests/testthat/test-bind.R |only quickr-0.3.0/quickr/tests/testthat/test-block-scopes.R |only quickr-0.3.0/quickr/tests/testthat/test-c-bridge-hoist.R |only quickr-0.3.0/quickr/tests/testthat/test-c-wrapper-public-api-coverage.R |only quickr-0.3.0/quickr/tests/testthat/test-classes.R |only quickr-0.3.0/quickr/tests/testthat/test-closure-hoist-snapshots.R |only quickr-0.3.0/quickr/tests/testthat/test-closure-semantics-grid.R |only quickr-0.3.0/quickr/tests/testthat/test-codecov-coverage.R |only quickr-0.3.0/quickr/tests/testthat/test-compile-package.R |only quickr-0.3.0/quickr/tests/testthat/test-compiler.R |only quickr-0.3.0/quickr/tests/testthat/test-cran-budget.R |only quickr-0.3.0/quickr/tests/testthat/test-cran-smoke-runtime.R |only quickr-0.3.0/quickr/tests/testthat/test-declare-type.R | 2 quickr-0.3.0/quickr/tests/testthat/test-dims2c-length.R |only quickr-0.3.0/quickr/tests/testthat/test-dims2f.R | 23 quickr-0.3.0/quickr/tests/testthat/test-div-cast.R | 2 quickr-0.3.0/quickr/tests/testthat/test-div-mod.R | 2 quickr-0.3.0/quickr/tests/testthat/test-dotted-arg-size-expr.R |only quickr-0.3.0/quickr/tests/testthat/test-dotted-symbols.R |only quickr-0.3.0/quickr/tests/testthat/test-drop.R |only quickr-0.3.0/quickr/tests/testthat/test-error-handling.R |only quickr-0.3.0/quickr/tests/testthat/test-errors.R | 164 +++ quickr-0.3.0/quickr/tests/testthat/test-example-convolve.R | 4 quickr-0.3.0/quickr/tests/testthat/test-example-heat_diffusion.R | 122 ++ quickr-0.3.0/quickr/tests/testthat/test-example-roll_mean.R | 2 quickr-0.3.0/quickr/tests/testthat/test-example-viterbi.R | 2 quickr-0.3.0/quickr/tests/testthat/test-fallthrough-assignment.R |only quickr-0.3.0/quickr/tests/testthat/test-flang-preference.R |only quickr-0.3.0/quickr/tests/testthat/test-float-to-int.R |only quickr-0.3.0/quickr/tests/testthat/test-floor-large.R |only quickr-0.3.0/quickr/tests/testthat/test-for-iterables.R |only quickr-0.3.0/quickr/tests/testthat/test-friendly-size.R | 2 quickr-0.3.0/quickr/tests/testthat/test-hoist-mask.R | 2 quickr-0.3.0/quickr/tests/testthat/test-ifelse.R | 2 quickr-0.3.0/quickr/tests/testthat/test-internal-utils.R |only quickr-0.3.0/quickr/tests/testthat/test-local-closure-control-flow.R |only quickr-0.3.0/quickr/tests/testthat/test-local-closure-optional-args-more.R |only quickr-0.3.0/quickr/tests/testthat/test-logical-indexing.R |only quickr-0.3.0/quickr/tests/testthat/test-logical.R | 30 quickr-0.3.0/quickr/tests/testthat/test-loops.R | 2 quickr-0.3.0/quickr/tests/testthat/test-machine.R |only quickr-0.3.0/quickr/tests/testthat/test-matrix-inference.R |only quickr-0.3.0/quickr/tests/testthat/test-matrix-lapack.R |only quickr-0.3.0/quickr/tests/testthat/test-matrix-mul.R |only quickr-0.3.0/quickr/tests/testthat/test-matrix-parse.R |only quickr-0.3.0/quickr/tests/testthat/test-matrix-vector-recycling-nrow.R |only quickr-0.3.0/quickr/tests/testthat/test-matrix.R | 230 +++++ quickr-0.3.0/quickr/tests/testthat/test-multiple-return.R | 4 quickr-0.3.0/quickr/tests/testthat/test-openmp-error-snapshots.R |only quickr-0.3.0/quickr/tests/testthat/test-openmp-parallelization.R |only quickr-0.3.0/quickr/tests/testthat/test-openmp-utils.R |only quickr-0.3.0/quickr/tests/testthat/test-package-internal-procs.R |only quickr-0.3.0/quickr/tests/testthat/test-parallel-declare.R |only quickr-0.3.0/quickr/tests/testthat/test-parentheses.R |only quickr-0.3.0/quickr/tests/testthat/test-qr-solve.R |only quickr-0.3.0/quickr/tests/testthat/test-quick-context.R |only quickr-0.3.0/quickr/tests/testthat/test-quick-name.R |only quickr-0.3.0/quickr/tests/testthat/test-quick-windows-paths.R |only quickr-0.3.0/quickr/tests/testthat/test-r2f-r-attr.R |only quickr-0.3.0/quickr/tests/testthat/test-r2f-registry.R |only quickr-0.3.0/quickr/tests/testthat/test-reduction-scalars.R |only quickr-0.3.0/quickr/tests/testthat/test-rep-int.R |only quickr-0.3.0/quickr/tests/testthat/test-rev.R |only quickr-0.3.0/quickr/tests/testthat/test-runif.R | 2 quickr-0.3.0/quickr/tests/testthat/test-sapply-closures.R |only quickr-0.3.0/quickr/tests/testthat/test-scope-state.R |only quickr-0.3.0/quickr/tests/testthat/test-seq.R | 105 ++ quickr-0.3.0/quickr/tests/testthat/test-size-constraint.R | 15 quickr-0.3.0/quickr/tests/testthat/test-size-expr-abs.R |only quickr-0.3.0/quickr/tests/testthat/test-size-expr-dim-nrow-ncol.R |only quickr-0.3.0/quickr/tests/testthat/test-sizes-arithmetic.R |only quickr-0.3.0/quickr/tests/testthat/test-subscript-drop-length1-ranges.R |only quickr-0.3.0/quickr/tests/testthat/test-subscript-hoisted-temporaries.R |only quickr-0.3.0/quickr/tests/testthat/test-subset-reduction.R |only quickr-0.3.0/quickr/tests/testthat/test-superassign-logical-subscript.R |only quickr-0.3.0/quickr/tests/testthat/test-superassignment-semantics-variety.R |only quickr-0.3.0/quickr/tests/testthat/test-superassignment-snapshots.R |only quickr-0.3.0/quickr/tests/testthat/test-superassignment.R |only quickr-0.3.0/quickr/tests/testthat/test-svd.R |only quickr-0.3.0/quickr/tests/testthat/test-unary-intrinsics.R | 4 quickr-0.3.0/quickr/tests/testthat/test-var-storage-bytes.R |only quickr-0.3.0/quickr/tests/testthat/test-which.R | 62 + 176 files changed, 3747 insertions(+), 618 deletions(-)
Title: Plastome Assembly Coverage Visualization
Description: Visualizes the coverage depth of a complete plastid genome as well as the equality of its inverted repeat regions in relation to the circular, quadripartite genome structure and the location of individual genes. For more information, please see Gruenstaeudl and Jenke (2020) <doi:10.1186/s12859-020-3475-0>.
Author: Michael Gruenstaeudl [aut, cre] ,
Gregory Smith [ctb],
Nils Jenke [ctb]
Maintainer: Michael Gruenstaeudl <m_gruenstaeudl@fhsu.edu>
Diff between PACVr versions 1.1.4 dated 2026-03-30 and 1.1.5 dated 2026-04-17
DESCRIPTION | 10 +++++----- MD5 | 38 +++++++++++++++++++------------------- NAMESPACE | 6 +++--- R/AnalysisSpecs.R | 2 +- R/Coverage.R | 2 +- R/GBKData.R | 2 +- R/IROps.R | 2 +- R/OutputSpecs.R | 2 +- R/PACVr.R | 2 +- R/RCircosOps.R | 2 +- R/compileStats.R | 2 +- R/coverageCalcOps.R | 2 +- R/customRead.gb.R | 34 +++++++++------------------------- R/helpers.R | 2 +- R/parsingOps.R | 2 +- R/quadripOps.R | 2 +- R/readingOps.R | 2 +- R/visualisationOps.R | 2 +- R/writingOps.R | 2 +- inst/doc/PACVr_Vignette.pdf |binary 20 files changed, 51 insertions(+), 67 deletions(-)
Title: Vector in Partition
Description: Non-parametric clustering of joint pattern multi-genetic/epigenetic factors. This package contains functions designed to cluster subjects based on gene features including single nucleotide polymorphisms (SNPs), DNA methylation (CPG), gene expression (GE), and covariate data. The novel concept follows the general K-means (Hartigan and Wong (1979) <doi:10.2307/2346830> framework but uses weighted Euclidean distances across the gene features to cluster subjects. This approach is unique in that it attempts to capture all pairwise interactions in an effort to cluster based on their complex biological interactions.
Author: Joseph Handwerker [aut, ctb, cre],
Allison Plaxco [aut, ctb],
Luke Pirrotta [ctb],
Lauren Sobral [ctb],
Meredith Ray [aut, ctb]
Maintainer: Joseph Handwerker <jkhndwrk@memphis.edu>
Diff between RHclust versions 2.0.0 dated 2023-08-15 and 3.0.0 dated 2026-04-17
DESCRIPTION | 17 MD5 | 39 - NAMESPACE | 4 R/BinaryClass.R | 303 ++++------- R/IndexGrouped.R |only R/SimData.R | 538 ++++++++++---------- R/SimulatedGrouped.R |only R/VIP.R | 233 +++++++- R/VIPcov.R | 1270 ++++++++++++++++++++++++++++-------------------- R/VIPlong.R |only R/VIPnoCPG.R | 210 ++++++- R/VIPnoSNP.R | 205 ++++++- R/gower.R |only R/vipx.R |only R/zzz.R |only man/BinaryClass.Rd | 20 man/IndexGrouped.Rd |only man/SimData.Rd | 6 man/SimulatedGrouped.Rd |only man/VIP.Rd | 18 man/VIPcov.Rd | 38 - man/VIPlong.Rd |only man/VIPnoCPG.Rd | 12 man/VIPnoSNP.Rd | 12 man/gower.Rd |only man/vipx.Rd |only 26 files changed, 1819 insertions(+), 1106 deletions(-)
Title: Faster Raster and Spatial Vector Processing Using 'GRASS'
Description: Processing of large-in-memory/large-on disk rasters and spatial
vectors using 'GRASS' <https://grass.osgeo.org/>. Most functions in the
'terra' package are recreated. Processing of medium-sized and smaller
spatial objects will nearly always be faster using 'terra' or 'sf', but
for large-in-memory/large-on-disk objects, 'fasterRaster' may be faster.
To use most of the functions, you must have the stand-alone version (not
the 'OSGeoW4' installer version) of 'GRASS' 8.0 or higher.
Author: Adam B. Smith [cre, aut]
Maintainer: Adam B. Smith <adam.smith@mobot.org>
Diff between fasterRaster versions 8.4.1.1 dated 2025-11-18 and 8.4.1.2 dated 2026-04-17
fasterRaster-8.4.1.1/fasterRaster/R/rNormRast.r |only fasterRaster-8.4.1.1/fasterRaster/R/rUnifRast.r |only fasterRaster-8.4.1.1/fasterRaster/man/dot-makeGRaster.Rd |only fasterRaster-8.4.1.1/fasterRaster/man/dot-makeGVector.Rd |only fasterRaster-8.4.1.2/fasterRaster/DESCRIPTION | 8 fasterRaster-8.4.1.2/fasterRaster/MD5 | 276 +-- fasterRaster-8.4.1.2/fasterRaster/NAMESPACE | 2 fasterRaster-8.4.1.2/fasterRaster/NEWS.md | 14 fasterRaster-8.4.1.2/fasterRaster/R/00d_GRaster_class.r | 16 fasterRaster-8.4.1.2/fasterRaster/R/00e_GVector_class.r | 14 fasterRaster-8.4.1.2/fasterRaster/R/04_arithmetic.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/05_GRaster_functions_by_layer.r | 16 fasterRaster-8.4.1.2/fasterRaster/R/06_GRaster_functions_across_layers.r | 12 fasterRaster-8.4.1.2/fasterRaster/R/07_comparison.r | 4 fasterRaster-8.4.1.2/fasterRaster/R/aggregate.r | 4 fasterRaster-8.4.1.2/fasterRaster/R/app.r | 72 fasterRaster-8.4.1.2/fasterRaster/R/as.contour.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/as.int.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/as.lines.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/as.points.r | 4 fasterRaster-8.4.1.2/fasterRaster/R/as.polygons.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/bioclims_GRaster.r | 4 fasterRaster-8.4.1.2/fasterRaster/R/bioclims_SpatRaster.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/buffer.r | 6 fasterRaster-8.4.1.2/fasterRaster/R/cellSize.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/centroids.r | 4 fasterRaster-8.4.1.2/fasterRaster/R/classify.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/cleanGeom.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/clump.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/compositeRGB.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/concats.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/connectors.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/convHull.r | 4 fasterRaster-8.4.1.2/fasterRaster/R/copyGSpatial.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/crds.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/crop.r | 4 fasterRaster-8.4.1.2/fasterRaster/R/delaunay.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/denoise_noise.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/disagg.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/distance.r | 4 fasterRaster-8.4.1.2/fasterRaster/R/erase.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/extend.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/extract.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/fast.r | 8 fasterRaster-8.4.1.2/fasterRaster/R/fasterRaster.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/fillHoles.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/fillNAs.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/flow.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/flowPath.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/focal.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/fractalRast.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/fragmentation.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/geomorphons.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/grid.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/hexagons.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/hillshade.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/horizonHeight.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/init.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/interpIDW.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/interpSplines.r | 4 fasterRaster-8.4.1.2/fasterRaster/R/intersect.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/kernel.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/longlat.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/mask.r | 4 fasterRaster-8.4.1.2/fasterRaster/R/maskNA.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/match.r | 6 fasterRaster-8.4.1.2/fasterRaster/R/merge.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/multivarEnvSim.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/plot.r | 4 fasterRaster-8.4.1.2/fasterRaster/R/predict.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/princomp.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/project.r | 4 fasterRaster-8.4.1.2/fasterRaster/R/rSpatialDepRast.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/rWalkRast.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/rasterize.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/rbind.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/reorient.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/replace_single_square_bracket.r | 4 fasterRaster-8.4.1.2/fasterRaster/R/resample.r | 14 fasterRaster-8.4.1.2/fasterRaster/R/rnormRast.r |only fasterRaster-8.4.1.2/fasterRaster/R/ruggedness.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/runifRast.r |only fasterRaster-8.4.1.2/fasterRaster/R/sampleRast.r | 4 fasterRaster-8.4.1.2/fasterRaster/R/scale.r | 8 fasterRaster-8.4.1.2/fasterRaster/R/segregate.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/selectRange.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/simplifyGeom.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/sineRast.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/smoothGeom.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/spatSample.r | 8 fasterRaster-8.4.1.2/fasterRaster/R/streams.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/stretch.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/subset_single_bracket.r | 10 fasterRaster-8.4.1.2/fasterRaster/R/subst.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/sun.r | 10 fasterRaster-8.4.1.2/fasterRaster/R/terrain.r | 18 fasterRaster-8.4.1.2/fasterRaster/R/thinLines.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/thinPoints.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/tiles.r | 4 fasterRaster-8.4.1.2/fasterRaster/R/trim.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/union.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/update.r | 4 fasterRaster-8.4.1.2/fasterRaster/R/vegIndex.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/voronoi.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/wetness.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/xor.r | 2 fasterRaster-8.4.1.2/fasterRaster/README.md | 7 fasterRaster-8.4.1.2/fasterRaster/build/partial.rdb |binary fasterRaster-8.4.1.2/fasterRaster/build/vignette.rds |binary fasterRaster-8.4.1.2/fasterRaster/inst/CITATION | 21 fasterRaster-8.4.1.2/fasterRaster/inst/doc/GRasters.html | 4 fasterRaster-8.4.1.2/fasterRaster/inst/doc/fasterRaster.html | 76 fasterRaster-8.4.1.2/fasterRaster/inst/doc/faster_fasterRaster.html | 4 fasterRaster-8.4.1.2/fasterRaster/inst/doc/hidden_functions.Rmd | 3 fasterRaster-8.4.1.2/fasterRaster/inst/doc/hidden_functions.html | 10 fasterRaster-8.4.1.2/fasterRaster/inst/doc/projects_mapsets.html | 4 fasterRaster-8.4.1.2/fasterRaster/inst/doc/regions.html | 4 fasterRaster-8.4.1.2/fasterRaster/inst/doc/three_d_objects.html | 4 fasterRaster-8.4.1.2/fasterRaster/inst/pkgdown.yml | 2 fasterRaster-8.4.1.2/fasterRaster/man/GLocation.Rd | 158 - fasterRaster-8.4.1.2/fasterRaster/man/app.Rd | 261 +-- fasterRaster-8.4.1.2/fasterRaster/man/copyGSpatial.Rd | 78 fasterRaster-8.4.1.2/fasterRaster/man/dot-g.proj.Rd | 30 fasterRaster-8.4.1.2/fasterRaster/man/dot-g.region.Rd | 30 fasterRaster-8.4.1.2/fasterRaster/man/dot-rename.Rd | 40 fasterRaster-8.4.1.2/fasterRaster/man/exists.Rd | 50 fasterRaster-8.4.1.2/fasterRaster/man/fasterRaster.Rd | 824 +++++----- fasterRaster-8.4.1.2/fasterRaster/man/location.Rd | 84 - fasterRaster-8.4.1.2/fasterRaster/man/locationCreate.Rd | 78 fasterRaster-8.4.1.2/fasterRaster/man/locationFind.Rd | 96 - fasterRaster-8.4.1.2/fasterRaster/man/locationRestore.Rd | 70 fasterRaster-8.4.1.2/fasterRaster/man/locations.Rd | 40 fasterRaster-8.4.1.2/fasterRaster/man/ls.Rd | 42 fasterRaster-8.4.1.2/fasterRaster/man/makeGRaster.Rd |only fasterRaster-8.4.1.2/fasterRaster/man/makeGVector.Rd |only fasterRaster-8.4.1.2/fasterRaster/man/mapset.Rd | 58 fasterRaster-8.4.1.2/fasterRaster/man/mow.Rd | 126 - fasterRaster-8.4.1.2/fasterRaster/man/rNormRast.Rd | 2 fasterRaster-8.4.1.2/fasterRaster/man/rUnifRast.Rd | 2 fasterRaster-8.4.1.2/fasterRaster/man/region.Rd | 200 +- fasterRaster-8.4.1.2/fasterRaster/man/rm.Rd | 72 fasterRaster-8.4.1.2/fasterRaster/man/trim.Rd | 126 - fasterRaster-8.4.1.2/fasterRaster/vignettes/hidden_functions.Rmd | 3 143 files changed, 1683 insertions(+), 1640 deletions(-)
Title: 'HTML' Element Construction
Description: Provides a deterministic, framework-agnostic Domain-Specific Language for building
'HTML' nodes and rendering them to a string.
Author: Kennedy Mwavu [aut, cre] ,
Sigflux [cph, fnd]
Maintainer: Kennedy Mwavu <mwavukennedy@gmail.com>
Diff between hypertext versions 1.1.0 dated 2026-03-07 and 1.2.0 dated 2026-04-17
hypertext-1.1.0/hypertext/man/dot-escape_html.Rd |only hypertext-1.1.0/hypertext/man/dot-flatten_children.Rd |only hypertext-1.1.0/hypertext/man/dot-make_tag.Rd |only hypertext-1.1.0/hypertext/man/dot-make_void_tag.Rd |only hypertext-1.1.0/hypertext/man/dot-render_attrs.Rd |only hypertext-1.2.0/hypertext/DESCRIPTION | 6 hypertext-1.2.0/hypertext/MD5 | 19 - hypertext-1.2.0/hypertext/R/tags.R | 175 +++++++--- hypertext-1.2.0/hypertext/tests/testthat/test-flatten_children.R | 15 hypertext-1.2.0/hypertext/tests/testthat/test-list2.R |only hypertext-1.2.0/hypertext/tests/testthat/test-tag.R | 17 hypertext-1.2.0/hypertext/tests/testthat/test-tag_factories.R | 26 - hypertext-1.2.0/hypertext/tests/testthat/test-tag_list.R | 14 hypertext-1.2.0/hypertext/tests/testthat/test-trailing_commas.R |only 14 files changed, 192 insertions(+), 80 deletions(-)
Title: Inferential Methods for Multimodal and Other Networks
Description: A set of tools for testing networks.
It includes functions for univariate and multivariate
conditional uniform graph and quadratic assignment procedure testing,
and network regression.
The package is a complement to
'Multimodal Political Networks' (2021, ISBN:9781108985000),
and includes various datasets used in the book.
Built on the 'manynet' package, all functions operate with matrices,
edge lists, and 'igraph', 'network', and 'tidygraph' objects,
and on one-mode and two-mode (bipartite) networks.
Author: James Hollway [cre, aut, ctb] ,
Henrique Sposito [ctb] ,
Jael Tan [ctb] ,
Bernhard Bieri [ctb]
Maintainer: James Hollway <james.hollway@graduateinstitute.ch>
Diff between migraph versions 1.6.0 dated 2026-04-04 and 1.6.2 dated 2026-04-17
migraph-1.6.0/migraph/R/tutorial_test.R |only migraph-1.6.0/migraph/man/test_tutorials.Rd |only migraph-1.6.2/migraph/DESCRIPTION | 8 migraph-1.6.2/migraph/MD5 | 47 + migraph-1.6.2/migraph/NAMESPACE | 1 migraph-1.6.2/migraph/NEWS.md | 38 + migraph-1.6.2/migraph/R/model_distrib.R | 10 migraph-1.6.2/migraph/R/tutorial_run.R | 19 migraph-1.6.2/migraph/inst/migraph.png |only migraph-1.6.2/migraph/inst/tutorials/tutorial0/tutorial0.Rmd | 4 migraph-1.6.2/migraph/inst/tutorials/tutorial0/tutorial0.html | 68 +- migraph-1.6.2/migraph/inst/tutorials/tutorial7/diffusion.Rmd | 68 +- migraph-1.6.2/migraph/inst/tutorials/tutorial7/diffusion.html | 216 ++++---- migraph-1.6.2/migraph/inst/tutorials/tutorial8/diversity.Rmd | 61 +- migraph-1.6.2/migraph/inst/tutorials/tutorial8/diversity.html | 248 +++++----- migraph-1.6.2/migraph/inst/tutorials/tutorial9/ergm.Rmd | 2 migraph-1.6.2/migraph/inst/tutorials/tutorial9/ergm.html | 207 ++++---- migraph-1.6.2/migraph/inst/tutorials/tutorial9/ergm_files/figure-html/visflo2-1.png |binary migraph-1.6.2/migraph/man/figures/logo.png |binary migraph-1.6.2/migraph/tests/testthat/Rplots.pdf |only migraph-1.6.2/migraph/tests/testthat/helper-functions.R | 104 ++++ migraph-1.6.2/migraph/tests/testthat/test-model_distrib.R | 7 migraph-1.6.2/migraph/tests/testthat/test-model_predict.R |only migraph-1.6.2/migraph/tests/testthat/test-tutorials_autograph.R | 17 migraph-1.6.2/migraph/tests/testthat/test-tutorials_manynet.R | 16 migraph-1.6.2/migraph/tests/testthat/test-tutorials_migraph.R | 20 migraph-1.6.2/migraph/tests/testthat/test-tutorials_netrics.R |only migraph-1.6.2/migraph/tests/testthat/test-tutorials_run.R |only 28 files changed, 674 insertions(+), 487 deletions(-)
Title: Acceder Con R a Los Datos Del Portal De Hacienda
Description: Obtener listado de datos, acceder y extender series del Portal de
Datos de Hacienda.Las proyecciones se realizan con 'forecast',
Hyndman RJ, Khandakar Y (2008) <doi:10.18637/jss.v027.i03>.
Search, download and forecast time-series from the Ministry of Economy
of Argentina. Forecasts are built with the 'forecast' package,
Hyndman RJ, Khandakar Y (2008) <doi:10.18637/jss.v027.i03>.
Author: Fernando Garcia Diaz [aut, cre]
Maintainer: Fernando Garcia Diaz <fmgarciadiaz78@gmail.com>
Diff between PortalHacienda versions 0.1.7 dated 2023-05-31 and 0.1.8 dated 2026-04-17
PortalHacienda-0.1.7/PortalHacienda/man/PortalHacienda.Rd |only PortalHacienda-0.1.8/PortalHacienda/DESCRIPTION | 9 - PortalHacienda-0.1.8/PortalHacienda/MD5 | 12 - PortalHacienda-0.1.8/PortalHacienda/R/FuncionesAcceso.R | 9 - PortalHacienda-0.1.8/PortalHacienda/build/vignette.rds |binary PortalHacienda-0.1.8/PortalHacienda/inst/doc/Tutorial.R | 2 PortalHacienda-0.1.8/PortalHacienda/inst/doc/Tutorial.html | 76 ++++------ PortalHacienda-0.1.8/PortalHacienda/man/PortalHacienda-package.Rd |only 8 files changed, 52 insertions(+), 56 deletions(-)
More information about PortalHacienda at CRAN
Permanent link
Title: Heterogeneous Methods for Shape and Other Multidimensional Data
Description: Tools for geometric morphometric analyses and multidimensional
data. Implements methods for morphological disparity analysis using
bootstrap and rarefaction,
as reviewed in Foote (1997) <doi:10.1146/annurev.ecolsys.28.1.129>.
Includes integration and modularity testing,
following Fruciano et al. (2013) <doi:10.1371/journal.pone.0069376>,
using Escoufier's RV coefficient as test statistic as well as
two-block partial least squares -
PLS, Rohlf and Corti (2000) <doi:10.1080/106351500750049806>.
Also includes vector angle comparisons,
orthogonal projection for data correction
(Burnaby (1966) <doi:10.2307/2528217>; Fruciano (2016) <doi:10.1007/s00427-016-0537-4>),
and parallel analysis for dimensionality reduction (Buja and Eyuboglu (1992)
<doi:10.1207/s15327906mbr2704_2>).
Author: Carmelo Fruciano [aut, cre]
Maintainer: Carmelo Fruciano <carmelo.fruciano@unict.it>
Diff between GeometricMorphometricsMix versions 0.6.0.1 dated 2026-01-27 and 0.6.1.1 dated 2026-04-17
GeometricMorphometricsMix-0.6.0.1/GeometricMorphometricsMix/tests/testthat/test-kmultparallel.R |only GeometricMorphometricsMix-0.6.1.1/GeometricMorphometricsMix/DESCRIPTION | 10 GeometricMorphometricsMix-0.6.1.1/GeometricMorphometricsMix/MD5 | 32 GeometricMorphometricsMix-0.6.1.1/GeometricMorphometricsMix/NAMESPACE | 2 GeometricMorphometricsMix-0.6.1.1/GeometricMorphometricsMix/NEWS.md | 11 GeometricMorphometricsMix-0.6.1.1/GeometricMorphometricsMix/R/Kmultparallel.R | 842 +--------- GeometricMorphometricsMix-0.6.1.1/GeometricMorphometricsMix/R/PLS_fit.R | 46 GeometricMorphometricsMix-0.6.1.1/GeometricMorphometricsMix/R/deprecated_defunct.R | 23 GeometricMorphometricsMix-0.6.1.1/GeometricMorphometricsMix/README.md | 8 GeometricMorphometricsMix-0.6.1.1/GeometricMorphometricsMix/inst/doc/disparity_analysis.html | 4 GeometricMorphometricsMix-0.6.1.1/GeometricMorphometricsMix/inst/doc/pls_analysis_use_case.html | 56 GeometricMorphometricsMix-0.6.1.1/GeometricMorphometricsMix/man/GeometricMorphometricsMix-defunct.Rd | 14 GeometricMorphometricsMix-0.6.1.1/GeometricMorphometricsMix/man/GeometricMorphometricsMix-deprecated.Rd |only GeometricMorphometricsMix-0.6.1.1/GeometricMorphometricsMix/man/Kmultparallel.Rd | 219 -- GeometricMorphometricsMix-0.6.1.1/GeometricMorphometricsMix/man/plot.parallel_Kmult.Rd | 41 GeometricMorphometricsMix-0.6.1.1/GeometricMorphometricsMix/man/pls.Rd | 4 GeometricMorphometricsMix-0.6.1.1/GeometricMorphometricsMix/man/print.parallel_Kmult.Rd | 29 GeometricMorphometricsMix-0.6.1.1/GeometricMorphometricsMix/man/summary.parallel_Kmult.Rd | 28 18 files changed, 258 insertions(+), 1111 deletions(-)
More information about GeometricMorphometricsMix at CRAN
Permanent link
Title: R Interface to Get French Heritage Data
Description: Get spatial vector data from the Atlas du Patrimoine
(<http://atlas.patrimoines.culture.fr/atlas/trunk/>),
the official national platform of the French Ministry of Culture,
and facilitate its use within R geospatial workflows.
The package provides functions to list available heritage datasets,
query and retrieve heritage data using spatial queries based
on user-provided sf objects, perform spatial filtering operations,
and return results as sf objects suitable for spatial analysis, mapping,
and integration into heritage management and landscape studies.
Author: Matthieu Chevereau [aut, cre]
Maintainer: Matthieu Chevereau <matthieu.chevereau@hotmail.fr>
Diff between frheritage versions 0.1.0 dated 2026-01-24 and 0.1.1 dated 2026-04-17
frheritage-0.1.0/frheritage/man/geo_dep.Rd |only frheritage-0.1.0/frheritage/man/geo_shapefiles_read.Rd |only frheritage-0.1.0/frheritage/man/geo_spatial_check.Rd |only frheritage-0.1.0/frheritage/man/geo_spatial_filter.Rd |only frheritage-0.1.0/frheritage/man/geo_too_large.Rd |only frheritage-0.1.0/frheritage/tests/testthat/test-geo_dep.R |only frheritage-0.1.0/frheritage/tests/testthat/test-geo_shapefiles_read.R |only frheritage-0.1.0/frheritage/tests/testthat/test-geo_spatial_check.R |only frheritage-0.1.0/frheritage/tests/testthat/test-geo_spatial_filter.R |only frheritage-0.1.0/frheritage/tests/testthat/test-geo_too_large.R |only frheritage-0.1.1/frheritage/DESCRIPTION | 6 frheritage-0.1.1/frheritage/MD5 | 48 - frheritage-0.1.1/frheritage/NAMESPACE | 10 frheritage-0.1.1/frheritage/NEWS.md |only frheritage-0.1.1/frheritage/R/data.R | 3 frheritage-0.1.1/frheritage/R/geo.R | 295 ++------ frheritage-0.1.1/frheritage/R/get_deps.R |only frheritage-0.1.1/frheritage/R/get_heritage.R | 347 +++++++--- frheritage-0.1.1/frheritage/R/get_heritage_ids.R | 232 +++++- frheritage-0.1.1/frheritage/R/ids.R | 50 + frheritage-0.1.1/frheritage/R/utils.R | 47 + frheritage-0.1.1/frheritage/man/atlas_ok.Rd |only frheritage-0.1.1/frheritage/man/geo_extent.Rd | 14 frheritage-0.1.1/frheritage/man/geo_shapefile_read.Rd |only frheritage-0.1.1/frheritage/man/get_deps.Rd |only frheritage-0.1.1/frheritage/man/get_heritage.Rd | 60 - frheritage-0.1.1/frheritage/man/get_heritage_ids.Rd | 10 frheritage-0.1.1/frheritage/tests/testthat/test-atlas_ok.R |only frheritage-0.1.1/frheritage/tests/testthat/test-data_filter.R | 9 frheritage-0.1.1/frheritage/tests/testthat/test-geo_extent.R | 33 frheritage-0.1.1/frheritage/tests/testthat/test-geo_shapefile_read.R |only frheritage-0.1.1/frheritage/tests/testthat/test-get_deps.R |only frheritage-0.1.1/frheritage/tests/testthat/test-get_heritage.R | 174 +++-- frheritage-0.1.1/frheritage/tests/testthat/test-get_heritage_ids.R | 83 +- 34 files changed, 871 insertions(+), 550 deletions(-)
Title: Tidy Tuning Tools
Description: The ability to tune models is important. 'tune' contains
functions and classes to be used in conjunction with other
'tidymodels' packages for finding reasonable values of
hyper-parameters in models, preprocessing methods, and post-processing
steps.
Author: Max Kuhn [aut, cre] ,
Posit Software, PBC [cph, fnd]
Maintainer: Max Kuhn <max@posit.co>
Diff between tune versions 2.0.1 dated 2025-10-17 and 2.1.0 dated 2026-04-17
tune-2.0.1/tune/tests/testthat/_snaps/bayes.md |only tune-2.0.1/tune/tests/testthat/test-GP.R |only tune-2.0.1/tune/tests/testthat/test-bayes.R |only tune-2.1.0/tune/DESCRIPTION | 26 tune-2.1.0/tune/MD5 | 211 ++-- tune-2.1.0/tune/NAMESPACE | 37 tune-2.1.0/tune/NEWS.md | 50 + tune-2.1.0/tune/R/0_imports.R | 12 tune-2.1.0/tune/R/augment.R | 24 tune-2.1.0/tune/R/checks.R | 105 +- tune-2.1.0/tune/R/collect.R | 167 +++ tune-2.1.0/tune/R/control.R | 69 + tune-2.1.0/tune/R/finalize.R | 10 tune-2.1.0/tune/R/gp_helpers.R |only tune-2.1.0/tune/R/grid_helpers.R | 76 - tune-2.1.0/tune/R/grid_performance.R | 52 + tune-2.1.0/tune/R/last_fit.R | 5 tune-2.1.0/tune/R/logging.R | 6 tune-2.1.0/tune/R/loop_over_all_stages-helpers.R | 236 +++-- tune-2.1.0/tune/R/loop_over_all_stages.R | 366 +++++-- tune-2.1.0/tune/R/merge.R | 24 tune-2.1.0/tune/R/metric-selection.R | 9 tune-2.1.0/tune/R/min_grid.R | 4 tune-2.1.0/tune/R/outcome-names.R | 4 tune-2.1.0/tune/R/parallel.R | 26 tune-2.1.0/tune/R/resample.R | 5 tune-2.1.0/tune/R/schedule.R | 72 + tune-2.1.0/tune/R/symbol.R | 55 - tune-2.1.0/tune/R/tune-package.R |only tune-2.1.0/tune/R/tune_bayes.R | 232 +--- tune-2.1.0/tune/R/tune_grid.R | 41 tune-2.1.0/tune/R/tune_grid_loop.R | 14 tune-2.1.0/tune/R/utils.R | 238 +++++ tune-2.1.0/tune/inst/WORDLIST | 10 tune-2.1.0/tune/inst/loop.qmd |only tune-2.1.0/tune/inst/regression_tests/simple_tune_example.R | 6 tune-2.1.0/tune/inst/test_objects.R | 16 tune-2.1.0/tune/man/add_resample_weights.Rd |only tune-2.1.0/tune/man/autoplot.tune_results.Rd | 2 tune-2.1.0/tune/man/calculate_resample_weights.Rd |only tune-2.1.0/tune/man/check_resample_weights.Rd |only tune-2.1.0/tune/man/collect_predictions.Rd | 2 tune-2.1.0/tune/man/compute_metrics.Rd | 2 tune-2.1.0/tune/man/conf_mat_resampled.Rd | 2 tune-2.1.0/tune/man/control_bayes.Rd | 7 tune-2.1.0/tune/man/control_grid.Rd | 10 tune-2.1.0/tune/man/coord_obs_pred.Rd | 2 tune-2.1.0/tune/man/empty_ellipses.Rd | 102 +- tune-2.1.0/tune/man/expo_decay.Rd | 2 tune-2.1.0/tune/man/extract-tune.Rd | 2 tune-2.1.0/tune/man/extract_resample_weights.Rd |only tune-2.1.0/tune/man/figures/lifecycle-deprecated.svg |only tune-2.1.0/tune/man/figures/lifecycle-experimental.svg |only tune-2.1.0/tune/man/figures/lifecycle-stable.svg |only tune-2.1.0/tune/man/figures/lifecycle-superseded.svg |only tune-2.1.0/tune/man/finalize_model.Rd | 2 tune-2.1.0/tune/man/fit_best.Rd | 2 tune-2.1.0/tune/man/fit_resamples.Rd | 6 tune-2.1.0/tune/man/int_pctl.tune_results.Rd | 2 tune-2.1.0/tune/man/internal-parallel.Rd | 4 tune-2.1.0/tune/man/last_fit.Rd | 2 tune-2.1.0/tune/man/merge.recipe.Rd | 2 tune-2.1.0/tune/man/min_grid.Rd | 2 tune-2.1.0/tune/man/resample_weights_utils.Rd |only tune-2.1.0/tune/man/show_best.Rd | 2 tune-2.1.0/tune/man/tune-internal-functions.Rd | 4 tune-2.1.0/tune/man/tune-package.Rd |only tune-2.1.0/tune/man/tune_bayes.Rd | 8 tune-2.1.0/tune/man/tune_grid.Rd | 6 tune-2.1.0/tune/tests/testthat/Rplots.pdf |binary tune-2.1.0/tune/tests/testthat/_snaps/augment.md | 40 tune-2.1.0/tune/tests/testthat/_snaps/checks.md | 63 + tune-2.1.0/tune/tests/testthat/_snaps/compute_metrics.md | 16 tune-2.1.0/tune/tests/testthat/_snaps/control.md |only tune-2.1.0/tune/tests/testthat/_snaps/engine-parameters.md | 4 tune-2.1.0/tune/tests/testthat/_snaps/gp_helpers.md |only tune-2.1.0/tune/tests/testthat/_snaps/grid.md | 8 tune-2.1.0/tune/tests/testthat/_snaps/int_pctl.md | 8 tune-2.1.0/tune/tests/testthat/_snaps/loop-over-all-stages-helpers-config-key.md | 20 tune-2.1.0/tune/tests/testthat/_snaps/loop-over-all-stages-helpers-make-static.md | 16 tune-2.1.0/tune/tests/testthat/_snaps/loop-over-all-stages-helpers-predict-all-types.md | 39 tune-2.1.0/tune/tests/testthat/_snaps/parallel.md | 45 tune-2.1.0/tune/tests/testthat/_snaps/resample.md | 18 tune-2.1.0/tune/tests/testthat/_snaps/tune_bayes.md |only tune-2.1.0/tune/tests/testthat/_snaps/weights.md |only tune-2.1.0/tune/tests/testthat/data/knn_gp.rds |binary tune-2.1.0/tune/tests/testthat/data/lm_bayes.rds |binary tune-2.1.0/tune/tests/testthat/data/rcv_results.rds |binary tune-2.1.0/tune/tests/testthat/data/test_objects.RData |binary tune-2.1.0/tune/tests/testthat/test-augment.R | 69 - tune-2.1.0/tune/tests/testthat/test-checks.R | 196 +++- tune-2.1.0/tune/tests/testthat/test-compute_metrics.R | 50 - tune-2.1.0/tune/tests/testthat/test-control.R |only tune-2.1.0/tune/tests/testthat/test-engine-parameters.R | 20 tune-2.1.0/tune/tests/testthat/test-gp_helpers.R |only tune-2.1.0/tune/tests/testthat/test-grid.R | 23 tune-2.1.0/tune/tests/testthat/test-int_pctl.R | 28 tune-2.1.0/tune/tests/testthat/test-loop-over-all-stages-helpers-config-key.R | 20 tune-2.1.0/tune/tests/testthat/test-loop-over-all-stages-helpers-data-subsets.R | 6 tune-2.1.0/tune/tests/testthat/test-loop-over-all-stages-helpers-make-static.R | 14 tune-2.1.0/tune/tests/testthat/test-loop-over-all-stages-helpers-predict-all-types.R | 472 ++++------ tune-2.1.0/tune/tests/testthat/test-loop-over-all-stages-helpers-train-post.R | 12 tune-2.1.0/tune/tests/testthat/test-loop-over-all-stages-helpers-update-fit.R | 20 tune-2.1.0/tune/tests/testthat/test-loop-over-all-stages-logging.R | 1 tune-2.1.0/tune/tests/testthat/test-loop-over-all-stages-post-estimation-and-tuning-extract.R | 24 tune-2.1.0/tune/tests/testthat/test-loop-over-all-stages-post-estimation-and-tuning.R | 24 tune-2.1.0/tune/tests/testthat/test-loop-over-all-stages-post-estimation-no-tuning.R | 99 +- tune-2.1.0/tune/tests/testthat/test-loop-over-all-stages-post-no-estimation-or-tuning.R | 24 tune-2.1.0/tune/tests/testthat/test-loop-over-all-stages-post-no-estimation-with-tuning-extract.R | 24 tune-2.1.0/tune/tests/testthat/test-loop-over-all-stages-post-no-estimation-with-tuning.R | 24 tune-2.1.0/tune/tests/testthat/test-loop-over-all-stages-prediction-only.R | 24 tune-2.1.0/tune/tests/testthat/test-merge.R | 176 +-- tune-2.1.0/tune/tests/testthat/test-min-grid.R | 2 tune-2.1.0/tune/tests/testthat/test-quantile-regression.R |only tune-2.1.0/tune/tests/testthat/test-resample.R | 9 tune-2.1.0/tune/tests/testthat/test-select_best.R | 30 tune-2.1.0/tune/tests/testthat/test-symbol.R | 12 tune-2.1.0/tune/tests/testthat/test-tune_bayes.R |only tune-2.1.0/tune/tests/testthat/test-weights.R |only 119 files changed, 2602 insertions(+), 1461 deletions(-)
Title: Client for 'TGStat API'
Description: Allow function for using 'TGStat Stat API' and
'TGStat Search API', for more details see <https://api.tgstat.ru/docs/ru/start/intro.html>.
'TGStat' provide telegram channel analytics data.
Author: Alexey Seleznev [aut, cre]
Maintainer: Alexey Seleznev <selesnow@gmail.com>
Diff between rtgstat versions 0.3.4 dated 2024-10-25 and 0.3.6 dated 2026-04-17
DESCRIPTION | 15 +++++++++------ MD5 | 23 ++++++++++++++++------- NAMESPACE | 1 + NEWS.md | 9 +++++++++ R/rtgstat_package.R | 2 +- R/tg_api_usage.R | 10 +++++----- R/utils.R | 5 ++++- R/zzz.R | 2 -- tests |only 9 files changed, 45 insertions(+), 22 deletions(-)
Title: Group Iterative Multiple Model Estimation
Description: Data-driven approach for arriving at person-specific time series models. The method first identifies which relations replicate across the majority of individuals to detect signal from noise. These group-level relations are then used as a foundation for starting the search for person-specific (or individual-level) relations. See Gates & Molenaar (2012) <doi:10.1016/j.neuroimage.2012.06.026>.
Author: Stephanie Lane [aut, trl],
Kathleen M Gates [aut, cre, ccp],
Zachary Fisher [aut],
Cara Arizmendi [aut],
Peter Molenaar [aut, ccp],
Edgar Merkle [ctb],
Michael Hallquist [ctb],
Hallie Pike [ctb],
Teague Henry [ctb],
Kelly Duffy [ctb],
Lan Luo [ctb],
[...truncated...]
Maintainer: Kathleen M Gates <gateskm@email.unc.edu>
Diff between gimme versions 0.9.4 dated 2026-03-25 and 10.0 dated 2026-04-17
DESCRIPTION | 8 +- MD5 | 52 +++++++------- R/aggSEM.R | 52 +++++++++----- R/final.org.R | 27 +++++-- R/gimme.R | 115 ++++++++++++++++++++----------- R/highest.mi.R | 50 +++++++++---- R/indSEM.R | 48 ++++++++----- R/indiv.search.R | 16 ++-- R/search.paths.R | 34 +++++---- R/search.paths.ind.R | 158 +++++++++++++++++++++++++------------------ R/search.paths.ms.R | 28 ++++--- R/subgroupStage.R | 74 +++++++++++--------- README.md | 4 - inst/doc/gimme_vignette.R | 2 inst/doc/gimme_vignette.Rmd | 4 - inst/doc/gimme_vignette.html | 21 ++--- man/aggSEM.Rd | 14 ++- man/final.org.Rd | 4 - man/gimmeSEM.Rd | 30 +++++--- man/highest.mi.Rd | 12 ++- man/indSEM.Rd | 14 ++- man/indiv.search.Rd | 6 + man/search.paths.Rd | 6 + man/search.paths.ind.Rd | 6 + man/search.paths.ms.Rd | 4 - man/subgroupStage.Rd | 3 vignettes/gimme_vignette.Rmd | 4 - 27 files changed, 498 insertions(+), 298 deletions(-)
Title: Performance Measures for 'mlr3'
Description: Implements multiple performance measures for supervised
learning. Includes over 40 measures for regression and
classification. Additionally, meta information about the performance
measures can be queried, e.g. what the best and worst possible
performances scores are.
Author: Michel Lang [aut] ,
Martin Binder [ctb],
Marc Becker [cre, aut] ,
Lona Koers [aut]
Maintainer: Marc Becker <marcbecker@posteo.de>
Diff between mlr3measures versions 1.2.0 dated 2025-11-25 and 1.3.0 dated 2026-04-17
DESCRIPTION | 6 +- MD5 | 118 +++++++++++++++++++++--------------------- NAMESPACE | 2 NEWS.md | 8 ++ R/binary_auc.R | 100 ++++++++++++++++++++++++++++++++--- R/binary_dor.R | 4 - R/binary_fbeta.R | 4 - R/binary_fdr.R | 4 - R/binary_fn.R | 4 - R/binary_fnr.R | 4 - R/binary_fomr.R | 4 - R/binary_fp.R | 4 - R/binary_fpr.R | 4 - R/binary_gmean.R | 4 - R/binary_gpr.R | 6 +- R/binary_npv.R | 4 - R/binary_ppv.R | 4 - R/binary_tn.R | 4 - R/binary_tnr.R | 4 - R/binary_tp.R | 4 - R/binary_tpr.R | 4 - R/classif_auc.R | 37 +++++++------ R/classif_logloss.R | 5 + R/classif_mbrier.R | 4 - R/classif_mcc.R | 19 ++++-- R/confusion_matrix.R | 11 ++- R/helper.R | 19 ++++-- R/measures.R | 45 ++++++++++------ R/regr_ktau.R | 3 - R/regr_rmse.R | 11 +++ R/regr_rrse.R | 1 R/regr_rse.R | 1 R/regr_smape.R | 6 +- R/zzz.R | 5 + build/partial.rdb |binary man/auc.Rd | 27 +++++++++ man/dor.Rd | 8 ++ man/fbeta.Rd | 16 +++++ man/fdr.Rd | 8 ++ man/fn.Rd | 8 ++ man/fnr.Rd | 8 ++ man/fomr.Rd | 8 ++ man/fp.Rd | 8 ++ man/fpr.Rd | 8 ++ man/gmean.Rd | 8 ++ man/gpr.Rd | 8 ++ man/ktau.Rd | 3 - man/logloss.Rd | 5 + man/mbrier.Rd | 8 ++ man/mcc.Rd | 23 ++++++-- man/measures.Rd | 2 man/npv.Rd | 8 ++ man/ppv.Rd | 17 +++++- man/smape.Rd | 10 ++- man/tn.Rd | 8 ++ man/tnr.Rd | 17 +++++- man/tp.Rd | 8 ++ man/tpr.Rd | 19 +++++- tests/testthat/test_binary.R | 87 ++++++++++++++++++++++++++++++ tests/testthat/test_classif.R | 16 +++-- 60 files changed, 607 insertions(+), 206 deletions(-)
Title: Interface for the 'Finnish Biodiversity Information Facility'
API
Description: A programmatic interface to the 'Finnish Biodiversity Information
Facility' ('FinBIF') API (<https://api.laji.fi>). 'FinBIF' aggregates
Finnish biodiversity data from multiple sources in a single open access
portal for researchers, citizen scientists, industry and government.
'FinBIF' allows users of biodiversity information to find, access, combine
and visualise data on Finnish plants, animals and microorganisms. The
'finbif' package makes the publicly available data in 'FinBIF' easily
accessible to programmers. Biodiversity information is available on taxonomy
and taxon occurrence. Occurrence data can be filtered by taxon, time,
location and other variables. The data accessed are conveniently
preformatted for subsequent analyses.
Author: Finnish Museum of Natural History - Luomus [cph] ,
Finnish Biodiversity Information Facility [cph] ,
William K. Morris [aut, cre]
Maintainer: William K. Morris <willi@mmorris.email>
Diff between finbif versions 0.9.13 dated 2026-03-04 and 0.9.14 dated 2026-04-17
DESCRIPTION | 8 MD5 | 100 NAMESPACE | 1 NEWS.md | 12 R/api_get.R | 4 R/finbif-package.R | 59 R/finbif_collections.R | 166 R/finbif_occurrence.R | 52 R/finbif_occurrence_load.R | 2 R/finbif_records.R | 34 R/finbif_request_token.R | 22 R/finbif_taxa.R | 7 R/sysdata.R | 16 R/sysdata.rda |binary R/utils.R | 9 R/variables.R | 2 R/zzz.R | 4 README.md | 2 build/vignette.rds |binary man/finbif-package.Rd | 35 man/finbif_occurrence.Rd | 2 man/finbif_occurrence_load.Rd | 2 man/finbif_request_token.Rd | 7 man/finbif_taxa.Rd | 3 man/variables.Rd | 2 tests/fixtures/finbif_cache_db_timeout.yml | 20 tests/fixtures/finbif_cache_file_timeout.yml | 20 tests/fixtures/finbif_cache_timeout.yml | 20 tests/fixtures/finbif_check_taxa.yml | 8 tests/fixtures/finbif_collections.yml |12342 ++++- tests/fixtures/finbif_informal_groups.yml | 4 tests/fixtures/finbif_last_mod1.yml | 6 tests/fixtures/finbif_last_mod2.yml | 6 tests/fixtures/finbif_last_mod3.yml | 6 tests/fixtures/finbif_metadata.yml | 235 tests/fixtures/finbif_occurrence.yml |13614 ++++-- tests/fixtures/finbif_occurrence_aggregate.yml |21131 +++++++++- tests/fixtures/finbif_occurrence_api_error.yml | 4 tests/fixtures/finbif_occurrence_compute_var_from_id_zero_rows.yml |12366 ++++- tests/fixtures/finbif_occurrence_dates.yml |21108 +++++++++ tests/fixtures/finbif_occurrence_load.yml | 110 tests/fixtures/finbif_occurrence_print.yml | 18 tests/fixtures/finbif_occurrence_select_local_area.yml | 6 tests/fixtures/finbif_taxa.yml | 24 tests/testthat/_snaps/caching.md | 6 tests/testthat/_snaps/finbif_collections.md | 544 tests/testthat/_snaps/finbif_metadata.md | 1 tests/testthat/_snaps/finbif_occurrence.md | 51 tests/testthat/_snaps/finbif_occurrence_load.md | 61 tests/testthat/test-finbif_occurrence_load.R | 30 tests/testthat/test-finbif_request_token.R | 16 51 files changed, 71318 insertions(+), 10990 deletions(-)
Title: Load Data from Facebook API Marketing
Description: Load data by campaigns, ads, ad sets and insights, ad account and business manager
from Facebook Marketing API into R. For more details see official documents by Facebook
Marketing API <https://developers.facebook.com/docs/marketing-api>.
Author: Alexey Seleznev [aut, cre]
Maintainer: Alexey Seleznev <selesnow@gmail.com>
Diff between rfacebookstat versions 2.13.1 dated 2025-08-20 and 2.14.0 dated 2026-04-17
DESCRIPTION | 6 +++--- MD5 | 20 ++++++++++---------- NEWS.md | 5 +++++ R/fbGetAdSets.R | 2 +- R/fbGetMarketingStat.R | 5 ++++- R/fbParsers.R | 3 ++- R/zzz.R | 2 +- build/partial.rdb |binary inst/doc/rfacebookstat-authorization.html | 5 +++-- inst/doc/rfacebookstat-cost-data.html | 5 +++-- inst/doc/rfacebookstat-get-statistics.html | 5 +++-- 11 files changed, 35 insertions(+), 23 deletions(-)
Title: Data Class and Tools for Handling Spatial-Temporal Data
Description: Data class for increased interoperability working with
spatial-temporal data together with corresponding functions and
methods (conversions, basic calculations and basic data manipulation).
The class distinguishes between spatial, temporal and other dimensions
to facilitate the development and interoperability of tools build for
it. Additional features are name-based addressing of data and internal
consistency checks (e.g. checking for the right data order in
calculations).
Author: Jan Philipp Dietrich [aut, cre] ,
Benjamin Leon Bodirsky [aut] ,
Markus Bonsch [aut],
Florian Humpenoeder [aut] ,
Stephen Bi [aut],
Kristine Karstens [aut] ,
Debbora Leip [aut] ,
Pascal Sauer [aut] ,
Lavinia Baumstark [ctb] ,
Christoph Bertram [ctb], [...truncated...]
Maintainer: Jan Philipp Dietrich <dietrich@pik-potsdam.de>
Diff between magclass versions 6.13.2 dated 2024-01-18 and 7.4.3 dated 2026-04-17
magclass-6.13.2/magclass/R/add_dimension.R |only magclass-6.13.2/magclass/tests/testthat/test-add_dimension.R |only magclass-7.4.3/magclass/DESCRIPTION | 99 magclass-7.4.3/magclass/MD5 | 438 ++- magclass-7.4.3/magclass/NAMESPACE | 13 magclass-7.4.3/magclass/R/addDim.R |only magclass-7.4.3/magclass/R/add_columns.R | 7 magclass-7.4.3/magclass/R/as.RasterBrick.R | 16 magclass-7.4.3/magclass/R/as.SpatRaster.R | 16 magclass-7.4.3/magclass/R/as.SpatRasterDataset.R | 1 magclass-7.4.3/magclass/R/as.SpatVector.R | 3 magclass-7.4.3/magclass/R/as.array.R | 22 magclass-7.4.3/magclass/R/as.data.frame.R | 9 magclass-7.4.3/magclass/R/as.magpie.R | 24 magclass-7.4.3/magclass/R/as_tibble.R | 6 magclass-7.4.3/magclass/R/cbind.magpie.R |only magclass-7.4.3/magclass/R/clean_magpie.R | 11 magclass-7.4.3/magclass/R/colMeans-method.R | 2 magclass-7.4.3/magclass/R/colSums-method.R | 3 magclass-7.4.3/magclass/R/collapseDim.R | 1 magclass-7.4.3/magclass/R/collapseNames.R | 3 magclass-7.4.3/magclass/R/commonYears.R |only magclass-7.4.3/magclass/R/complete_magpie.R | 16 magclass-7.4.3/magclass/R/convergence.R | 30 magclass-7.4.3/magclass/R/copy.attributes.R | 33 magclass-7.4.3/magclass/R/copy.magpie.R | 5 magclass-7.4.3/magclass/R/dimCode.R | 5 magclass-7.4.3/magclass/R/dimExists.R | 55 magclass-7.4.3/magclass/R/dimOrder.R | 3 magclass-7.4.3/magclass/R/dimReduce.R | 8 magclass-7.4.3/magclass/R/dimSums.R | 3 magclass-7.4.3/magclass/R/duplicates_check.R | 10 magclass-7.4.3/magclass/R/escapeRegex.R | 11 magclass-7.4.3/magclass/R/extend.R |only magclass-7.4.3/magclass/R/fulldim.R | 10 magclass-7.4.3/magclass/R/getCPR.R | 29 magclass-7.4.3/magclass/R/getCells.R | 3 magclass-7.4.3/magclass/R/getComment.R | 25 magclass-7.4.3/magclass/R/getCoords.R | 3 magclass-7.4.3/magclass/R/getDim.R | 51 magclass-7.4.3/magclass/R/getItems.R | 7 magclass-7.4.3/magclass/R/getNames.R | 5 magclass-7.4.3/magclass/R/getRegionList.R | 7 magclass-7.4.3/magclass/R/getRegions.R | 5 magclass-7.4.3/magclass/R/getSets.R | 73 magclass-7.4.3/magclass/R/getYears.R | 48 magclass-7.4.3/magclass/R/guessResolution.R |only magclass-7.4.3/magclass/R/hasCoords.R | 16 magclass-7.4.3/magclass/R/hasSets.R | 12 magclass-7.4.3/magclass/R/head.magpie.R | 29 magclass-7.4.3/magclass/R/ifelse.R | 22 magclass-7.4.3/magclass/R/is-methods.R | 32 magclass-7.4.3/magclass/R/is.magpie.R | 7 magclass-7.4.3/magclass/R/is.spatial.R | 8 magclass-7.4.3/magclass/R/is.temporal.R | 17 magclass-7.4.3/magclass/R/isYear.R | 3 magclass-7.4.3/magclass/R/log-method.R | 22 magclass-7.4.3/magclass/R/lowpass.R | 9 magclass-7.4.3/magclass/R/magpie-class.R | 178 + magclass-7.4.3/magclass/R/magpie_expand.R | 16 magclass-7.4.3/magclass/R/magpie_expand_dim.R | 19 magclass-7.4.3/magclass/R/magpiesort.R | 28 magclass-7.4.3/magclass/R/magpply.R | 66 magclass-7.4.3/magclass/R/matchDim.R |only magclass-7.4.3/magclass/R/maxample.R | 1 magclass-7.4.3/magclass/R/mbind.R | 98 magclass-7.4.3/magclass/R/mcalc.R | 3 magclass-7.4.3/magclass/R/mplot.R |only magclass-7.4.3/magclass/R/mselect.R | 5 magclass-7.4.3/magclass/R/ncells.R | 1 magclass-7.4.3/magclass/R/ndim.R | 1 magclass-7.4.3/magclass/R/new.magpie.R | 18 magclass-7.4.3/magclass/R/pmax-method.R |only magclass-7.4.3/magclass/R/pmin-method.R | 50 magclass-7.4.3/magclass/R/population_magpie.R | 6 magclass-7.4.3/magclass/R/print.magpie.R | 9 magclass-7.4.3/magclass/R/read.magpie.R | 7 magclass-7.4.3/magclass/R/read.report.R | 44 magclass-7.4.3/magclass/R/readComment.R | 4 magclass-7.4.3/magclass/R/readMagpieMZ.R | 26 magclass-7.4.3/magclass/R/readMagpieOther.R | 7 magclass-7.4.3/magclass/R/replace_non_finite.R | 32 magclass-7.4.3/magclass/R/round-method.R | 25 magclass-7.4.3/magclass/R/rowMeans-method.R | 2 magclass-7.4.3/magclass/R/rowSums-method.R | 3 magclass-7.4.3/magclass/R/sameDims.R |only magclass-7.4.3/magclass/R/setCells.R | 4 magclass-7.4.3/magclass/R/setComment.R | 4 magclass-7.4.3/magclass/R/setItems.R | 1 magclass-7.4.3/magclass/R/setNames_method.R | 24 magclass-7.4.3/magclass/R/setYears.R | 4 magclass-7.4.3/magclass/R/show.R | 1 magclass-7.4.3/magclass/R/sizeCheck.R | 4 magclass-7.4.3/magclass/R/spatRasterToDataset.R | 1 magclass-7.4.3/magclass/R/str.magpie.R | 1 magclass-7.4.3/magclass/R/suppressSpecificWarnings.R | 1 magclass-7.4.3/magclass/R/sysdata.R | 6 magclass-7.4.3/magclass/R/tail.magpie.R | 12 magclass-7.4.3/magclass/R/tidy2magpie.R | 4 magclass-7.4.3/magclass/R/time_interpolate.R | 35 magclass-7.4.3/magclass/R/unitjoin.R |only magclass-7.4.3/magclass/R/unitsplit.R | 3 magclass-7.4.3/magclass/R/unwrap.R | 7 magclass-7.4.3/magclass/R/where.R | 1 magclass-7.4.3/magclass/R/withAlignedDims.R |only magclass-7.4.3/magclass/R/wrap.R | 143 - magclass-7.4.3/magclass/R/write.magpie.R | 58 magclass-7.4.3/magclass/R/write.report.R | 6 magclass-7.4.3/magclass/R/write.report2.R | 3 magclass-7.4.3/magclass/R/writeNC.R |only magclass-7.4.3/magclass/README.md | 13 magclass-7.4.3/magclass/build/partial.rdb |binary magclass-7.4.3/magclass/build/vignette.rds |binary magclass-7.4.3/magclass/inst/doc/magclass-concept.R | 24 magclass-7.4.3/magclass/inst/doc/magclass-concept.Rmd | 10 magclass-7.4.3/magclass/inst/doc/magclass-concept.html | 295 +- magclass-7.4.3/magclass/inst/doc/magclass-expansion.R | 18 magclass-7.4.3/magclass/inst/doc/magclass-expansion.html | 193 - magclass-7.4.3/magclass/inst/doc/magclass.R | 85 magclass-7.4.3/magclass/inst/doc/magclass.Rmd | 13 magclass-7.4.3/magclass/inst/doc/magclass.html | 1128 +++++----- magclass-7.4.3/magclass/inst/doc/magclass6.R | 32 magclass-7.4.3/magclass/inst/doc/magclass6.Rmd | 6 magclass-7.4.3/magclass/inst/doc/magclass6.html | 366 +-- magclass-7.4.3/magclass/man/addDim.Rd |only magclass-7.4.3/magclass/man/add_columns.Rd | 11 magclass-7.4.3/magclass/man/add_dimension.Rd | 31 magclass-7.4.3/magclass/man/as.RasterBrick.Rd | 11 magclass-7.4.3/magclass/man/as.SpatRaster.Rd | 13 magclass-7.4.3/magclass/man/as.SpatRasterDataset.Rd | 12 magclass-7.4.3/magclass/man/as.SpatVector.Rd | 13 magclass-7.4.3/magclass/man/as.array-methods.Rd | 12 magclass-7.4.3/magclass/man/as.data.frame-methods.Rd | 12 magclass-7.4.3/magclass/man/as_tibble.magpie.Rd | 24 magclass-7.4.3/magclass/man/cbind.magpie.Rd |only magclass-7.4.3/magclass/man/clean_magpie.Rd | 6 magclass-7.4.3/magclass/man/colSums-methods.Rd | 6 magclass-7.4.3/magclass/man/collapseDim.Rd | 9 magclass-7.4.3/magclass/man/collapseNames.Rd | 9 magclass-7.4.3/magclass/man/commonYears.Rd |only magclass-7.4.3/magclass/man/complete_magpie.Rd | 8 magclass-7.4.3/magclass/man/convergence.Rd | 26 magclass-7.4.3/magclass/man/copy.attributes.Rd | 11 magclass-7.4.3/magclass/man/copy.magpie.Rd | 8 magclass-7.4.3/magclass/man/dimCode.Rd | 9 magclass-7.4.3/magclass/man/dimExists.Rd | 22 magclass-7.4.3/magclass/man/dimOrder.Rd | 10 magclass-7.4.3/magclass/man/dimReduce.Rd | 13 magclass-7.4.3/magclass/man/dimSums.Rd | 5 magclass-7.4.3/magclass/man/extend.Rd |only magclass-7.4.3/magclass/man/fulldim.Rd | 14 magclass-7.4.3/magclass/man/getCPR.Rd | 15 magclass-7.4.3/magclass/man/getCells.Rd | 15 magclass-7.4.3/magclass/man/getComment.Rd | 23 magclass-7.4.3/magclass/man/getCoords.Rd | 15 magclass-7.4.3/magclass/man/getDim.Rd | 25 magclass-7.4.3/magclass/man/getItems.Rd | 15 magclass-7.4.3/magclass/man/getNames.Rd | 15 magclass-7.4.3/magclass/man/getRegionList.Rd | 15 magclass-7.4.3/magclass/man/getRegions.Rd | 15 magclass-7.4.3/magclass/man/getSets.Rd | 15 magclass-7.4.3/magclass/man/getYears.Rd | 21 magclass-7.4.3/magclass/man/guessResolution.Rd |only magclass-7.4.3/magclass/man/hasCoords.Rd | 12 magclass-7.4.3/magclass/man/hasSets.Rd | 12 magclass-7.4.3/magclass/man/head.magpie.Rd | 14 magclass-7.4.3/magclass/man/is.temporal.Rd | 14 magclass-7.4.3/magclass/man/isYear.Rd | 12 magclass-7.4.3/magclass/man/lowpass.Rd | 11 magclass-7.4.3/magclass/man/magclass-package.Rd | 1 magclass-7.4.3/magclass/man/magpie-pmin-pmax.Rd |only magclass-7.4.3/magclass/man/magpie_expand.Rd | 11 magclass-7.4.3/magclass/man/magpiesort.Rd | 9 magclass-7.4.3/magclass/man/magpply.Rd | 8 magclass-7.4.3/magclass/man/matchDim.Rd |only magclass-7.4.3/magclass/man/maxample.Rd | 9 magclass-7.4.3/magclass/man/mbind.Rd | 8 magclass-7.4.3/magclass/man/mcalc.Rd | 6 magclass-7.4.3/magclass/man/mplot.Rd |only magclass-7.4.3/magclass/man/mselect.Rd | 6 magclass-7.4.3/magclass/man/ncells.Rd | 12 magclass-7.4.3/magclass/man/ndim.Rd | 12 magclass-7.4.3/magclass/man/new.magpie.Rd | 6 magclass-7.4.3/magclass/man/print.magpie.Rd | 8 magclass-7.4.3/magclass/man/read.magpie.Rd | 8 magclass-7.4.3/magclass/man/read.report.Rd | 8 magclass-7.4.3/magclass/man/replace_non_finite.Rd | 14 magclass-7.4.3/magclass/man/rowSums-methods.Rd | 6 magclass-7.4.3/magclass/man/sameDims.Rd |only magclass-7.4.3/magclass/man/setItems.Rd | 15 magclass-7.4.3/magclass/man/setNames-methods.Rd | 15 magclass-7.4.3/magclass/man/show-methods.Rd | 9 magclass-7.4.3/magclass/man/spatRasterToDataset.Rd | 5 magclass-7.4.3/magclass/man/str.magpie.Rd | 8 magclass-7.4.3/magclass/man/time_interpolate.Rd | 6 magclass-7.4.3/magclass/man/unitjoin.Rd |only magclass-7.4.3/magclass/man/unitsplit.Rd | 6 magclass-7.4.3/magclass/man/unwrap.Rd | 11 magclass-7.4.3/magclass/man/where.Rd | 6 magclass-7.4.3/magclass/man/withAlignedDims.Rd |only magclass-7.4.3/magclass/man/wrap.Rd | 11 magclass-7.4.3/magclass/man/write.magpie.Rd | 19 magclass-7.4.3/magclass/man/write.report.Rd | 8 magclass-7.4.3/magclass/man/write.report2.Rd | 8 magclass-7.4.3/magclass/man/writeNC.Rd |only magclass-7.4.3/magclass/tests/testthat/test-addDim.R |only magclass-7.4.3/magclass/tests/testthat/test-collapseDim.R | 2 magclass-7.4.3/magclass/tests/testthat/test-commonYears.R |only magclass-7.4.3/magclass/tests/testthat/test-convergence.R | 64 magclass-7.4.3/magclass/tests/testthat/test-dimExists.R | 28 magclass-7.4.3/magclass/tests/testthat/test-dimSums.R | 6 magclass-7.4.3/magclass/tests/testthat/test-extend.R |only magclass-7.4.3/magclass/tests/testthat/test-fulldim.R | 12 magclass-7.4.3/magclass/tests/testthat/test-getDim.R | 13 magclass-7.4.3/magclass/tests/testthat/test-getItems.R | 14 magclass-7.4.3/magclass/tests/testthat/test-getReduce.R | 12 magclass-7.4.3/magclass/tests/testthat/test-ifelse.R | 16 magclass-7.4.3/magclass/tests/testthat/test-magpie.R | 12 magclass-7.4.3/magclass/tests/testthat/test-magpie_expand.R | 8 magclass-7.4.3/magclass/tests/testthat/test-magpply.R | 4 magclass-7.4.3/magclass/tests/testthat/test-matchDim.R |only magclass-7.4.3/magclass/tests/testthat/test-mbind.R | 13 magclass-7.4.3/magclass/tests/testthat/test-mcalc.R | 26 magclass-7.4.3/magclass/tests/testthat/test-mplot.R |only magclass-7.4.3/magclass/tests/testthat/test-pmin-pmax.R |only magclass-7.4.3/magclass/tests/testthat/test-printmagpie.R | 2 magclass-7.4.3/magclass/tests/testthat/test-raster.R | 2 magclass-7.4.3/magclass/tests/testthat/test-readwritemagpie.R | 47 magclass-7.4.3/magclass/tests/testthat/test-readwritereport.R | 6 magclass-7.4.3/magclass/tests/testthat/test-replace_non_finite.R | 12 magclass-7.4.3/magclass/tests/testthat/test-time_interpolate.R | 7 magclass-7.4.3/magclass/tests/testthat/test-unitsplit.R | 8 magclass-7.4.3/magclass/tests/testthat/test-various.R | 27 magclass-7.4.3/magclass/vignettes/magclass-concept.Rmd | 10 magclass-7.4.3/magclass/vignettes/magclass.Rmd | 13 magclass-7.4.3/magclass/vignettes/magclass6.Rmd | 6 236 files changed, 3370 insertions(+), 2269 deletions(-)
Title: Fetch and Explore the Cornell Lab of Ornithology Open Tree of
Life Avian Phylogeny
Description: Fetches the Cornell Lab of Ornithology Open Tree of Life (clootl) tree in a specified taxonomy. Optionally prune it to a given set of study taxa. Provide a recommended citation list for the studies that informed the extracted tree. Tree generated as described in McTavish et al. (2024) <doi:10.1101/2024.05.20.595017>.
Author: Eliot Miller [aut, cre],
Emily Jane McTavish [aut],
Luna L. Sanchez Reyes [ctb, aut]
Maintainer: Eliot Miller <clootlmaintainers@gmail.com>
Diff between clootl versions 0.1.2 dated 2025-10-29 and 0.1.3 dated 2026-04-17
DESCRIPTION | 8 - MD5 | 39 +++---- NAMESPACE | 1 NEWS.md | 4 R/data.R | 56 ++++++---- R/extractTree.R | 228 +++++++++++++++++++++++------------------- R/getCitations.R | 41 +++---- R/sampleTrees.R | 30 ++--- R/utils.R | 93 ++++++++++++----- R/zzz.R | 2 README.md | 42 +++++-- data/clootl_data.rda |binary man/clootl_data.Rd | 56 ++++++---- man/extractTree.Rd | 34 ++---- man/getCitations.Rd | 12 -- man/get_avesdata_repo_path.Rd |only man/sampleTrees.Rd | 20 +-- man/set_avesdata_repo_path.Rd | 8 + man/taxonomyGet.Rd | 5 man/treeGet.Rd | 4 tests/testthat/test_basics.R | 185 ++++++++++++++++++++++++++++++---- 21 files changed, 565 insertions(+), 303 deletions(-)
Title: Seawater Carbonate Chemistry
Description: Calculates parameters of the seawater carbonate system and assists in design of ocean acidification perturbation experiments.
Author: Jean-Pierre Gattuso [aut],
James Orr [aut, cre, cph],
Jean-Marie Epitalon [aut],
Heloise Lavigne [aut],
Bernard Gentili [ctb],
Mathilde Hagens [ctb],
Andreas Hofmann [ctb],
Jens-Daniel Mueller [ctb],
Aurelien Proye [ctb],
James Rae [ctb],
Karline Soe [...truncated...]
Maintainer: James Orr <james.orr@lsce.ipsl.fr>
Diff between seacarb versions 3.3.3 dated 2024-02-15 and 3.3.4 dated 2026-04-17
ChangeLog | 5 ++++- DESCRIPTION | 21 +++++++++++---------- MD5 | 4 ++-- 3 files changed, 17 insertions(+), 13 deletions(-)
Title: Interface for the 'QuickJS-NG' Lightweight 'JavaScript' Engine
Description: An 'R' interface to the 'QuickJS' portable 'JavaScript'
engine. The engine and all 'R' to 'JavaScript' interoperability is bundled
within the package, requiring no dependencies beyond a 'C' compiler.
Author: Andrew R. Johnson [aut, cre] ,
QuickJS Authors [cph] ,
QuickJS-NG Authors [cph]
Maintainer: Andrew R. Johnson <andrew.johnson@arjohnsonau.com>
Diff between QuickJSR versions 1.9.1-2 dated 2026-04-15 and 1.9.2 dated 2026-04-17
DESCRIPTION | 6 LICENSE | 4 MD5 |only NAMESPACE | 16 NEWS.md | 192 +++--- R/JSContext.R | 340 +++++----- R/qjs.R | 158 ++-- R/quickjsr-package.R | 20 R/zzz.R | 8 README.md | 260 ++++---- build/vignette.rds |binary inst/doc/working_with_js_types.R | 80 +- inst/doc/working_with_js_types.Rmd | 224 +++---- inst/doc/working_with_js_types.html | 1043 ++++++++++++++++----------------- inst/tinytest/test_JSContext.R | 88 +- inst/tinytest/test_data_conversion.R | 144 ++-- inst/tinytest/test_qjs_eval.R | 16 inst/tinytest/test_to_json_asis.R | 20 inst/tinytest/test_to_json_dataframe.R | 32 - inst/tinytest/test_to_json_date.R | 28 inst/tinytest/test_to_json_factor.R | 12 inst/tinytest/test_to_json_matrix.R | 22 man/JSContext-method-assign.Rd | 64 +- man/JSContext-method-call.Rd | 66 +- man/JSContext-method-get.Rd | 60 - man/JSContext-method-source.Rd | 70 +- man/JSContext-method-validate.Rd | 58 - man/JSContext.Rd | 42 - man/QuickJSR-package.Rd | 58 - man/from_json.Rd | 34 - man/qjs_eval.Rd | 56 - man/quickjs_version.Rd | 28 man/to_json.Rd | 38 - src/include/cpp11.hpp | 4 src/include/cpp11/R.hpp | 14 src/include/cpp11/altrep.hpp | 4 src/include/cpp11/as.hpp | 4 src/include/cpp11/attribute_proxy.hpp | 4 src/include/cpp11/data_frame.hpp | 62 - src/include/cpp11/declarations.hpp | 4 src/include/cpp11/doubles.hpp | 4 src/include/cpp11/external_pointer.hpp | 4 src/include/cpp11/function.hpp | 18 src/include/cpp11/integers.hpp | 4 src/include/cpp11/list.hpp | 11 src/include/cpp11/list_of.hpp | 4 src/include/cpp11/logicals.hpp | 4 src/include/cpp11/matrix.hpp | 4 src/include/cpp11/named_arg.hpp | 6 src/include/cpp11/protect.hpp | 12 src/include/cpp11/r_bool.hpp | 4 src/include/cpp11/r_string.hpp | 4 src/include/cpp11/r_vector.hpp | 14 src/include/cpp11/raws.hpp | 4 src/include/cpp11/sexp.hpp | 9 src/include/cpp11/strings.hpp | 4 src/init.cpp | 1 tests/tinytest.R | 10 vignettes/working_with_js_types.Rmd | 224 +++---- 59 files changed, 1866 insertions(+), 1862 deletions(-)
Title: Persistence Homology Utilities
Description: A low-level package for hosting persistence data. It is part of the
'TDAverse' suite of packages, which is designed to provide a collection of
packages for enabling machine learning and data science tasks using
persistent homology. Implements a class for hosting persistence data, a
number of coercers from and to already existing and used data structures
from other packages and functions to compute distances between persistence
diagrams. A formal definition and study of bottleneck and Wasserstein
distances can be found in Bubenik, Scott and Stanley (2023)
<doi:10.1007/s41468-022-00103-8>. Their implementation in 'phutil' relies on
the 'C++' Hera library developed by Kerber, Morozov and Nigmetov (2017)
<doi:10.1145/3064175>.
Author: Aymeric Stamm [aut, cre] ,
Jason Cory Brunson [aut] ,
Michael Kerber [ctb] ,
Dmitriy Morozov [ctb] ,
Arnur Nigmetov [ctb]
Maintainer: Aymeric Stamm <aymeric.stamm@cnrs.fr>
Diff between phutil versions 0.0.1-2 dated 2026-04-15 and 0.0.2 dated 2026-04-17
phutil-0.0.1-2/phutil/inst/include |only phutil-0.0.2/phutil/DESCRIPTION | 14 phutil-0.0.2/phutil/MD5 |only phutil-0.0.2/phutil/NAMESPACE | 3 phutil-0.0.2/phutil/NEWS.md | 31 + phutil-0.0.2/phutil/R/persistence-class.R | 52 ++ phutil-0.0.2/phutil/build/partial.rdb |binary phutil-0.0.2/phutil/build/vignette.rds |binary phutil-0.0.2/phutil/inst/doc/persistence-class.html | 3 phutil-0.0.2/phutil/inst/doc/validation-benchmark.R | 48 +- phutil-0.0.2/phutil/inst/doc/validation-benchmark.html | 271 ++++++------- phutil-0.0.2/phutil/inst/doc/validation-benchmark.qmd | 55 +- phutil-0.0.2/phutil/inst/tinytest/test-persistence-class.R | 32 + phutil-0.0.2/phutil/inst/tinytest/test-persistence.R |only phutil-0.0.2/phutil/man/persistence.Rd | 19 phutil-0.0.2/phutil/src/Makevars | 2 phutil-0.0.2/phutil/vignettes/validation-benchmark.qmd | 55 +- 17 files changed, 384 insertions(+), 201 deletions(-)
Title: Sweave Drivers with Extra Tricks Up their Sleeves
Description: *The package is deprecated. It uses the standard drivers
on R >= 4.6.0 since they incorporate all the functionalities below.*
Weave and tangle drivers for Sweave extending the standard drivers.
RweaveExtraLatex and RtangleExtra provide options to completely
ignore code chunks on weaving, tangling, or both. Chunks ignored on
weaving are not parsed, yet are written out verbatim on tangling.
Chunks ignored on tangling may be evaluated as usual on weaving, but
are completely left out of the tangled scripts. The driver
RtangleExtra also provides options to control the separation between
code chunks in the tangled script, and to specify the extension of
the file name (or remove it entirely) when splitting is selected.
Author: Vincent Goulet [cre, aut] ,
R Core Team [aut]
Maintainer: Vincent Goulet <vincent.goulet@act.ulaval.ca>
Diff between RweaveExtra versions 1.3-0 dated 2025-10-29 and 1.3-1 dated 2026-04-17
DESCRIPTION | 33 +++++++++++++++++---------------- MD5 | 19 +++++++++++-------- NAMESPACE | 10 ++++++---- R/RweaveExtra.R | 38 +++++++++++++++++++++----------------- build/partial.rdb |binary inst/NEWS.Rd | 12 ++++++++++++ man/RtangleExtra.Rd | 17 ++++++++++------- man/RweaveExtra-package.Rd | 5 ++++- man/RweaveExtraLatex.Rd | 14 ++++++++------ tests |only 10 files changed, 89 insertions(+), 59 deletions(-)
Title: Command Line Option Parser
Description: A command line parser inspired by Python's 'optparse' library to
be used with Rscript to write "#!" shebang scripts that accept short and
long flag/options.
Author: Trevor L. Davis [aut, cre] ,
Allen Day [aut] ,
Python Software Foundation [ctb] ,
Steve Lianoglou [ctb],
Jim Nikelski [ctb],
Kirill Mueller [ctb],
Peter Humburg [ctb],
Rich FitzJohn [ctb],
Gyu Jin Choi [ctb]
Maintainer: Trevor L. Davis <trevor.l.davis@gmail.com>
Diff between optparse versions 1.7.5 dated 2024-04-16 and 1.8.2 dated 2026-04-17
optparse-1.7.5/optparse/inst/doc/optparse.Rrst |only optparse-1.7.5/optparse/vignettes/optparse.Rrst |only optparse-1.8.2/optparse/DESCRIPTION | 27 optparse-1.8.2/optparse/MD5 | 42 optparse-1.8.2/optparse/NAMESPACE | 2 optparse-1.8.2/optparse/NEWS.md | 51 optparse-1.8.2/optparse/R/getopt.R |only optparse-1.8.2/optparse/R/optparse.R | 1325 +++++++++------- optparse-1.8.2/optparse/README.md | 127 - optparse-1.8.2/optparse/build/vignette.rds |binary optparse-1.8.2/optparse/exec/display_file.R | 53 optparse-1.8.2/optparse/exec/example.R | 103 - optparse-1.8.2/optparse/inst/doc/optparse.R | 12 optparse-1.8.2/optparse/inst/doc/optparse.Rmd |only optparse-1.8.2/optparse/inst/doc/optparse.html | 530 +++++- optparse-1.8.2/optparse/man/OptionParser-class.Rd | 19 optparse-1.8.2/optparse/man/OptionParser.Rd | 24 optparse-1.8.2/optparse/man/OptionParserOption-class.Rd | 72 optparse-1.8.2/optparse/man/add_make_option.Rd | 114 - optparse-1.8.2/optparse/man/parse_args.Rd | 39 optparse-1.8.2/optparse/man/print_help.Rd | 11 optparse-1.8.2/optparse/tests/testthat/_snaps |only optparse-1.8.2/optparse/tests/testthat/test-getopt.R |only optparse-1.8.2/optparse/tests/testthat/test-optparse.R | 879 +++++++--- optparse-1.8.2/optparse/vignettes/optparse.Rmd |only 25 files changed, 2208 insertions(+), 1222 deletions(-)
Title: "Risk Model Regression and Analysis with Complex Non-Linear
Models"
Description: Performs survival analysis using general non-linear models. Risk models can be the sum or product of terms. Each term is the product of exponential/linear functions of covariates. Additionally sub-terms can be defined as a sum of exponential, linear threshold, and step functions. Cox Proportional hazards <https://en.wikipedia.org/wiki/Proportional_hazards_model>, Poisson <https://en.wikipedia.org/wiki/Poisson_regression>, and Fine-Gray competing risks <https://www.publichealth.columbia.edu/research/population-health-methods/competing-risk-analysis> regression are supported. This work was sponsored by NASA Grants 80NSSC19M0161 and 80NSSC23M0129 through a subcontract from the National Council on Radiation Protection and Measurements (NCRP). The computing for this project was performed on the Beocat Research Cluster at Kansas State University, which is funded in part by NSF grants CNS-1006860, EPS-1006860, EPS-0919443, ACI-1440548, CHE-1726332, and NIH P20GM113109.
Author: Eric King-Giunta [aut, cre] ,
Amir Bahadori [ctb] ,
Dan Andresen [ctb] ,
Linda Walsh [ctb] ,
Benjamin French [ctb] ,
Lawrence Dauer [ctb] ,
John Boice Jr [ctb] ,
Kansas State University [cph],
NASA [fnd],
NCRP [fnd],
NRC [fnd]
Maintainer: Eric King-Giunta <egiunta@ksu.edu>
Diff between Colossus versions 1.4.10 dated 2026-02-20 and 1.5 dated 2026-04-17
Colossus-1.4.10/Colossus/cleanup |only Colossus-1.4.10/Colossus/cleanup.win |only Colossus-1.4.10/Colossus/src/Makevars.in |only Colossus-1.4.10/Colossus/src/Step_Calc.cpp |only Colossus-1.4.10/Colossus/src/Step_Calc.h |only Colossus-1.4.10/Colossus/tests/testthat/test-Cox_Plot.R |only Colossus-1.4.10/Colossus/tests/testthat/test-Cox_Regression.R |only Colossus-1.4.10/Colossus/tests/testthat/test-Poisson_Regression.R |only Colossus-1.4.10/Colossus/tests/testthat/test-Poisson_Residual.R |only Colossus-1.4.10/Colossus/tools |only Colossus-1.5/Colossus/DESCRIPTION | 13 Colossus-1.5/Colossus/MD5 | 320 +-- Colossus-1.5/Colossus/NEWS.md | 16 Colossus-1.5/Colossus/R/BasicRun.R | 757 ++++++--- Colossus-1.5/Colossus/R/CaseControl_Regression.R | 30 Colossus-1.5/Colossus/R/Cox_Regression.R | 99 - Colossus-1.5/Colossus/R/LogitRegression.R | 9 Colossus-1.5/Colossus/R/ObjValidate.R | 207 +- Colossus-1.5/Colossus/R/PlotTypes.R | 99 - Colossus-1.5/Colossus/R/Poisson_Regression.R | 56 Colossus-1.5/Colossus/R/SurvTypes.R | 318 +-- Colossus-1.5/Colossus/R/Utility.R | 488 +++-- Colossus-1.5/Colossus/R/utils-roxygen.R | 14 Colossus-1.5/Colossus/README.md | 33 Colossus-1.5/Colossus/build/vignette.rds |binary Colossus-1.5/Colossus/configure | 5 Colossus-1.5/Colossus/inst/WORDLIST | 7 Colossus-1.5/Colossus/inst/doc/Alt_Run_Opt.R | 8 Colossus-1.5/Colossus/inst/doc/Alt_Run_Opt.Rmd | 8 Colossus-1.5/Colossus/inst/doc/Alt_Run_Opt.html | 561 +++--- Colossus-1.5/Colossus/inst/doc/Control_Options.Rmd | 1 Colossus-1.5/Colossus/inst/doc/Control_Options.html | 174 +- Colossus-1.5/Colossus/inst/doc/Dose_Formula_Inputs.R | 2 Colossus-1.5/Colossus/inst/doc/Dose_Formula_Inputs.Rmd | 2 Colossus-1.5/Colossus/inst/doc/Dose_Formula_Inputs.html | 211 +- Colossus-1.5/Colossus/inst/doc/Equation_Expression.R | 6 Colossus-1.5/Colossus/inst/doc/Equation_Expression.Rmd | 6 Colossus-1.5/Colossus/inst/doc/Equation_Expression.html | 280 +-- Colossus-1.5/Colossus/inst/doc/Excess_and_Predicted_Cases.R | 2 Colossus-1.5/Colossus/inst/doc/Excess_and_Predicted_Cases.Rmd | 6 Colossus-1.5/Colossus/inst/doc/Excess_and_Predicted_Cases.html | 223 +- Colossus-1.5/Colossus/inst/doc/Grad_Hess.R | 34 Colossus-1.5/Colossus/inst/doc/Grad_Hess.Rmd | 34 Colossus-1.5/Colossus/inst/doc/Grad_Hess.html | 508 +++--- Colossus-1.5/Colossus/inst/doc/Logistic.R | 10 Colossus-1.5/Colossus/inst/doc/Logistic.Rmd | 10 Colossus-1.5/Colossus/inst/doc/Logistic.html | 499 +++-- Colossus-1.5/Colossus/inst/doc/Matched_Case_Control.R | 14 Colossus-1.5/Colossus/inst/doc/Matched_Case_Control.Rmd | 14 Colossus-1.5/Colossus/inst/doc/Matched_Case_Control.html | 464 +++-- Colossus-1.5/Colossus/inst/doc/Multi_Realization.R | 2 Colossus-1.5/Colossus/inst/doc/Multi_Realization.Rmd | 2 Colossus-1.5/Colossus/inst/doc/Multi_Realization.html | 231 +- Colossus-1.5/Colossus/inst/doc/Plotting_And_Analysis.R | 40 Colossus-1.5/Colossus/inst/doc/Plotting_And_Analysis.Rmd | 40 Colossus-1.5/Colossus/inst/doc/Plotting_And_Analysis.html | 657 ++++--- Colossus-1.5/Colossus/inst/doc/SMR_Analysis.R | 16 Colossus-1.5/Colossus/inst/doc/SMR_Analysis.Rmd | 16 Colossus-1.5/Colossus/inst/doc/SMR_Analysis.html | 346 ++-- Colossus-1.5/Colossus/inst/doc/Script_Comparison_Epicure.R | 6 Colossus-1.5/Colossus/inst/doc/Script_Comparison_Epicure.Rmd | 8 Colossus-1.5/Colossus/inst/doc/Script_Comparison_Epicure.html | 239 +- Colossus-1.5/Colossus/inst/doc/Starting-Description.R | 24 Colossus-1.5/Colossus/inst/doc/Starting-Description.Rmd | 26 Colossus-1.5/Colossus/inst/doc/Starting-Description.html | 596 ++++--- Colossus-1.5/Colossus/inst/doc/Time_Dep_Cov.R | 32 Colossus-1.5/Colossus/inst/doc/Time_Dep_Cov.Rmd | 32 Colossus-1.5/Colossus/inst/doc/Time_Dep_Cov.html | 477 +++-- Colossus-1.5/Colossus/inst/doc/Wald_and_Log_Bound.R | 64 Colossus-1.5/Colossus/inst/doc/Wald_and_Log_Bound.Rmd | 66 Colossus-1.5/Colossus/inst/doc/Wald_and_Log_Bound.html | 835 +++++----- Colossus-1.5/Colossus/inst/doc/count_time_tables.R | 36 Colossus-1.5/Colossus/inst/doc/count_time_tables.Rmd | 36 Colossus-1.5/Colossus/inst/doc/count_time_tables.html | 604 ++++--- Colossus-1.5/Colossus/man/CaseControlRun.Rd | 26 Colossus-1.5/Colossus/man/CoxRun.Rd | 26 Colossus-1.5/Colossus/man/CoxRunMulti.Rd | 24 Colossus-1.5/Colossus/man/Date_Shift.Rd | 2 Colossus-1.5/Colossus/man/EventAssignment.poisres.Rd | 2 Colossus-1.5/Colossus/man/EventAssignment.poisresbound.Rd | 2 Colossus-1.5/Colossus/man/Event_Count_Gen.Rd | 14 Colossus-1.5/Colossus/man/Event_Time_Gen.Rd | 10 Colossus-1.5/Colossus/man/Joint_Multiple_Events.Rd | 14 Colossus-1.5/Colossus/man/LikelihoodBound.Rd | 4 Colossus-1.5/Colossus/man/LikelihoodBound.coxres.Rd | 4 Colossus-1.5/Colossus/man/LikelihoodBound.default.Rd | 4 Colossus-1.5/Colossus/man/LikelihoodBound.poisres.Rd | 4 Colossus-1.5/Colossus/man/Likelihood_Ratio_Test.Rd | 4 Colossus-1.5/Colossus/man/Linked_Dose_Formula.Rd | 4 Colossus-1.5/Colossus/man/LogisticRun.Rd | 26 Colossus-1.5/Colossus/man/PoisRun.Rd | 26 Colossus-1.5/Colossus/man/PoisRunJoint.Rd | 30 Colossus-1.5/Colossus/man/PoisRunMulti.Rd | 24 Colossus-1.5/Colossus/man/RelativeRisk.coxres.Rd | 22 Colossus-1.5/Colossus/man/Replace_Missing.Rd | 8 Colossus-1.5/Colossus/man/Residual.poisres.Rd | 2 Colossus-1.5/Colossus/man/Time_Since.Rd | 6 Colossus-1.5/Colossus/man/factorize.Rd | 2 Colossus-1.5/Colossus/man/gen_time_dep.Rd | 10 Colossus-1.5/Colossus/man/get_form.Rd | 20 Colossus-1.5/Colossus/man/get_form_joint.Rd | 2 Colossus-1.5/Colossus/man/plot.coxres.Rd | 31 Colossus-1.5/Colossus/man/plotMartingale.Rd | 2 Colossus-1.5/Colossus/man/plotMartingale.coxres.Rd | 2 Colossus-1.5/Colossus/man/plotMartingale.default.Rd | 2 Colossus-1.5/Colossus/man/plotRisk.Rd | 2 Colossus-1.5/Colossus/man/plotRisk.coxres.Rd | 2 Colossus-1.5/Colossus/man/plotRisk.default.Rd | 2 Colossus-1.5/Colossus/man/plotSchoenfeld.Rd | 2 Colossus-1.5/Colossus/man/plotSchoenfeld.coxres.Rd | 2 Colossus-1.5/Colossus/man/plotSchoenfeld.default.Rd | 2 Colossus-1.5/Colossus/man/plotSurvival.Rd | 2 Colossus-1.5/Colossus/man/plotSurvival.coxres.Rd | 31 Colossus-1.5/Colossus/man/plotSurvival.default.Rd | 2 Colossus-1.5/Colossus/src/Calc_Repeated.cpp | 19 Colossus-1.5/Colossus/src/Calc_Repeated.h | 4 Colossus-1.5/Colossus/src/Colossus_init.c |only Colossus-1.5/Colossus/src/Colossus_types.h | 2 Colossus-1.5/Colossus/src/Grouping.cpp | 8 Colossus-1.5/Colossus/src/Grouping.h | 4 Colossus-1.5/Colossus/src/Main_Bound.cpp | 316 ++- Colossus-1.5/Colossus/src/Main_Bound.h | 16 Colossus-1.5/Colossus/src/Main_Functions.cpp | 214 ++ Colossus-1.5/Colossus/src/Main_Functions.h | 10 Colossus-1.5/Colossus/src/Main_Multi.cpp | 150 + Colossus-1.5/Colossus/src/Main_Multi.h | 10 Colossus-1.5/Colossus/src/Makevars |only Colossus-1.5/Colossus/src/Makevars.win | 2 Colossus-1.5/Colossus/src/Omnibus_Pieces.cpp | 100 - Colossus-1.5/Colossus/src/Omnibus_Pieces.h | 8 Colossus-1.5/Colossus/src/Plot_Extensions.cpp | 8 Colossus-1.5/Colossus/src/Plot_Extensions.h | 2 Colossus-1.5/Colossus/src/R_Interface.cpp | 234 +- Colossus-1.5/Colossus/src/R_Interface.h | 2 Colossus-1.5/Colossus/src/RcppExports.cpp | 24 Colossus-1.5/Colossus/src/Step_Bound.cpp |only Colossus-1.5/Colossus/src/Step_Bound.h |only Colossus-1.5/Colossus/src/Step_Grad.cpp | 3 Colossus-1.5/Colossus/src/Step_Grad.h | 2 Colossus-1.5/Colossus/src/Step_Newton.cpp | 3 Colossus-1.5/Colossus/src/Step_Newton.h | 2 Colossus-1.5/Colossus/src/Subterms_Risk.cpp | 2 Colossus-1.5/Colossus/src/Subterms_Risk.h | 4 Colossus-1.5/Colossus/tests/testthat/test-CaseControl.R | 37 Colossus-1.5/Colossus/tests/testthat/test-CoxPlot.R |only Colossus-1.5/Colossus/tests/testthat/test-CoxRegression.R |only Colossus-1.5/Colossus/tests/testthat/test-Formula.R | 2 Colossus-1.5/Colossus/tests/testthat/test-Logbound.R | 32 Colossus-1.5/Colossus/tests/testthat/test-Logit.R | 23 Colossus-1.5/Colossus/tests/testthat/test-Norm.R | 8 Colossus-1.5/Colossus/tests/testthat/test-PoissonRegression.R |only Colossus-1.5/Colossus/tests/testthat/test-PoissonResidual.R |only Colossus-1.5/Colossus/tests/testthat/test-Utility.R | 14 Colossus-1.5/Colossus/vignettes/Alt_Run_Opt.Rmd | 8 Colossus-1.5/Colossus/vignettes/Control_Options.Rmd | 1 Colossus-1.5/Colossus/vignettes/Dose_Formula_Inputs.Rmd | 2 Colossus-1.5/Colossus/vignettes/Equation_Expression.Rmd | 6 Colossus-1.5/Colossus/vignettes/Excess_and_Predicted_Cases.Rmd | 6 Colossus-1.5/Colossus/vignettes/Grad_Hess.Rmd | 34 Colossus-1.5/Colossus/vignettes/Logistic.Rmd | 10 Colossus-1.5/Colossus/vignettes/Matched_Case_Control.Rmd | 14 Colossus-1.5/Colossus/vignettes/Multi_Realization.Rmd | 2 Colossus-1.5/Colossus/vignettes/Plotting_And_Analysis.Rmd | 40 Colossus-1.5/Colossus/vignettes/SMR_Analysis.Rmd | 16 Colossus-1.5/Colossus/vignettes/Script_Comparison_Epicure.Rmd | 8 Colossus-1.5/Colossus/vignettes/Starting-Description.Rmd | 26 Colossus-1.5/Colossus/vignettes/Time_Dep_Cov.Rmd | 32 Colossus-1.5/Colossus/vignettes/Wald_and_Log_Bound.Rmd | 66 Colossus-1.5/Colossus/vignettes/count_time_tables.Rmd | 36 169 files changed, 6866 insertions(+), 5091 deletions(-)
Title: Functional Utilities for Data Processing
Description: Covers several areas of data processing: batch-splitting, reading and writing of large
data files, data tiling, one-hot encoding and decoding of data tiles, stratified proportional
(random or probabilistic) data sampling, data normalization and thresholding, substring location
and commonalities inside strings and location and tabulation of amino acids, modifications or
associated monoisotopic masses inside modified peptides. The extractor utility implements code from
'Matrix.utils', Varrichio C (2020), <https://cran.r-project.org/package=Matrix.utils>.
Author: Dragos Bandur [aut, cre]
Maintainer: Dragos Bandur <dbandur@sympatico.ca>
Diff between akin versions 0.2.0 dated 2026-04-11 and 0.2.1 dated 2026-04-17
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- NAMESPACE | 1 - NEWS.md | 5 +++++ R/tileD.R | 15 ++++++++------- R/utils.R | 3 +-- R/zzz.R | 6 ------ man/tileData.Rd | 13 +++++++------ 8 files changed, 32 insertions(+), 33 deletions(-)
Title: Infers Novel Immunoglobulin Alleles from Sequencing Data
Description: Infers the V genotype of an individual from immunoglobulin (Ig)
repertoire sequencing data (AIRR-Seq, Rep-Seq). Includes detection of
any novel alleles. This information is then used to correct existing V
allele calls from among the sample sequences.
Citations:
Gadala-Maria, et al (2015) <doi:10.1073/pnas.1417683112>,
Gadala-Maria, et al (2019) <doi:10.3389/fimmu.2019.00129>.
Author: Daniel Gadala-Maria [aut],
Susanna Marquez [aut, cre],
Moriah Cohen [aut],
Ayelet Peres [aut],
Jason Vander Heiden [aut],
Gur Yaari [aut],
Steven Kleinstein [aut, cph]
Maintainer: Susanna Marquez <susanna.marquez@yale.edu>
Diff between tigger versions 1.1.2 dated 2026-01-10 and 1.1.3 dated 2026-04-17
DESCRIPTION | 15 +++++++++------ MD5 | 26 +++++++++++++------------- NEWS.md | 18 +++++++++++++++++- R/bayesian.R | 4 ++-- R/functions.R | 40 ++++++++++++++++++++++++++-------------- build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 4 ++-- inst/doc/Tigger-Vignette.R | 4 ++-- inst/doc/Tigger-Vignette.Rmd | 7 +++---- inst/doc/Tigger-Vignette.pdf |binary man/reassignAlleles.Rd | 2 +- man/subsampleDb.Rd | 1 + vignettes/Tigger-Vignette.Rmd | 7 +++---- 14 files changed, 79 insertions(+), 49 deletions(-)
Title: Enhancing the 'parallel' Package
Description: Utility functions that enhance the 'parallel' package and support the built-in parallel backends of the 'future' package. For example, availableCores() gives the number of CPU cores available to your R process as given by the operating system, 'cgroups' and Linux containers, R options, and environment variables, including those set by job schedulers on high-performance compute clusters. If none is set, it will fall back to parallel::detectCores(). Another example is makeClusterPSOCK(), which is backward compatible with parallel::makePSOCKcluster() while doing a better job in setting up remote cluster workers without the need for configuring the firewall to do port-forwarding to your local computer.
Author: Henrik Bengtsson [aut, cre, cph] ,
Mike Cheng [ctb]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between parallelly versions 1.46.1 dated 2026-01-08 and 1.47.0 dated 2026-04-17
DESCRIPTION | 6 - MD5 | 112 ++++++++++++------------- NEWS.md | 63 +++++++++++--- R/010.cli.R | 2 R/RichSOCKcluster.R | 3 R/availableCores.R | 114 +++++++++++++++++++++----- R/availableWorkers.R | 29 ++++-- R/cgroups.R | 94 ++++++++++++++++++++- R/isForkedChild.R | 5 - R/isNodeAlive.R | 4 R/killNode.R | 14 +-- R/makeClusterMPI.R | 2 R/makeClusterPSOCK.R | 22 ++--- R/supportsMulticore.R | 16 +++ R/utils,cluster.R | 2 R/utils,pid.R | 2 R/utils.R | 2 build/vignette.rds |binary inst/WORDLIST | 1 inst/doc/parallelly-01-intro.html | 10 +- inst/doc/parallelly-01-intro.md | 10 +- inst/doc/parallelly-10-local-workers.html | 4 inst/doc/parallelly-10-local-workers.md | 4 inst/doc/parallelly-12-remote-workers.html | 14 +-- inst/doc/parallelly-12-remote-workers.md | 14 +-- inst/doc/parallelly-15-cloud-workers.html | 2 inst/doc/parallelly-15-cloud-workers.md | 2 inst/doc/parallelly-17-hpc-workers.html | 4 inst/doc/parallelly-17-hpc-workers.md | 4 inst/doc/parallelly-20-limit-workers.html | 16 +-- inst/doc/parallelly-20-limit-workers.md | 16 +-- inst/doc/parallelly-21-container-workers.html | 2 inst/doc/parallelly-21-container-workers.md | 2 inst/doc/parallelly-22-wine-workers.html | 68 +++++++++++++-- inst/doc/parallelly-22-wine-workers.md | 101 +++++++++++++++++++++-- inst/test-data/mixed-cgroups/piavpn.R | 4 inst/testme/test-availableCores.R | 46 ++++++++++ inst/testme/test-availableWorkers.R | 30 +++++- inst/testme/test-cgroups.R | 33 +++++++ inst/testme/test-cli.R | 18 ++-- inst/testme/test-freeCores.R | 46 ++++++++++ inst/testme/test-isConnectionValid.R | 2 inst/testme/test-utils,cluster.R | 50 +++++++++++ inst/testme/test-utils.R | 76 +++++++++++++++++ man/availableCores.Rd | 89 ++++++++++++++++---- man/availableWorkers.Rd | 6 - man/killNode.Rd | 8 - man/makeClusterPSOCK.Rd | 6 - man/supportsMulticore.Rd | 16 +++ vignettes/parallelly-01-intro.md | 10 +- vignettes/parallelly-10-local-workers.md | 4 vignettes/parallelly-12-remote-workers.md | 14 +-- vignettes/parallelly-15-cloud-workers.md | 2 vignettes/parallelly-17-hpc-workers.md | 4 vignettes/parallelly-20-limit-workers.md | 16 +-- vignettes/parallelly-21-container-workers.md | 2 vignettes/parallelly-22-wine-workers.md | 101 +++++++++++++++++++++-- 57 files changed, 1073 insertions(+), 276 deletions(-)
Title: Another Approach to Package Installation
Description: The goal of 'pak' is to make package installation faster and
more reliable. In particular, it performs all HTTP operations in
parallel, so metadata resolution and package downloads are fast.
Metadata and package files are cached on the local disk as well. 'pak'
has a dependency solver, so it finds version conflicts before
performing the installation. This version of 'pak' supports CRAN,
'Bioconductor' and 'GitHub' packages as well.
Author: Gabor Csardi [aut, cre],
Jim Hester [aut],
Posit Software, PBC [cph, fnd] ,
Winston Chang [ctb] ,
Ascent Digital Services [cph, fnd] ,
Hadley Wickham [ctb, cph] ,
Jeroen Ooms [ctb] ,
Maelle Salmon [ctb] ,
Duncan Temple Lang [ctb] ,
Lloyd Hilaiel [cph [...truncated...]
Maintainer: Gabor Csardi <csardi.gabor@gmail.com>
Diff between pak versions 0.9.3-1 dated 2026-04-15 and 0.9.4 dated 2026-04-17
DESCRIPTION | 6 MD5 |only NEWS.md | 6 R/repo.R | 2 R/subprocess.R | 2 man/repo_add.Rd | 2 src/library/cli/DESCRIPTION | 16 src/library/cli/LICENSE | 2 src/library/cli/NEWS.md | 11 src/library/cli/R/aaa-utils.R | 6 src/library/cli/R/aab-rstudio-detect.R | 63 src/library/cli/R/ansi-hyperlink.R | 99 src/library/cli/R/ansi-palette.R | 12 src/library/cli/R/ansi-utils.R | 7 src/library/cli/R/ansi.R | 103 - src/library/cli/R/ansiex.R | 180 + src/library/cli/R/app.R | 16 src/library/cli/R/assertions.R | 8 src/library/cli/R/box-styles.R | 14 src/library/cli/R/boxes.R | 41 src/library/cli/R/bullets.R | 9 src/library/cli/R/cat.R | 11 src/library/cli/R/cli-errors.R | 18 src/library/cli/R/cli.R | 251 +- src/library/cli/R/cliapp-docs.R | 5 src/library/cli/R/cliapp.R | 139 - src/library/cli/R/containers.R | 44 src/library/cli/R/debug.R | 20 src/library/cli/R/defer.R | 345 +-- src/library/cli/R/diff.R | 23 src/library/cli/R/docs.R | 1 src/library/cli/R/enc-utils.R | 1 src/library/cli/R/errors.R | 316 +-- src/library/cli/R/format-conditions.R | 55 src/library/cli/R/format.R | 1 src/library/cli/R/friendly-type.R | 314 +-- src/library/cli/R/glue.R | 50 src/library/cli/R/hash.R | 9 src/library/cli/R/inline.R | 50 src/library/cli/R/internals.R | 40 src/library/cli/R/keypress.R | 4 src/library/cli/R/lorem.R | 8 src/library/cli/R/num-ansi-colors.R | 45 src/library/cli/R/numbers.R |only src/library/cli/R/onload.R | 58 src/library/cli/R/pluralize.R | 20 src/library/cli/R/prettycode.R | 99 src/library/cli/R/print.R | 2 src/library/cli/R/progress-along.R | 82 src/library/cli/R/progress-bar.R | 15 src/library/cli/R/progress-c.R | 6 src/library/cli/R/progress-client.R | 114 - src/library/cli/R/progress-server.R | 29 src/library/cli/R/progress-ticking.R | 1 src/library/cli/R/progress-utils.R | 1 src/library/cli/R/progress-variables.R | 57 src/library/cli/R/rematch2.R | 15 src/library/cli/R/rlang.R | 13 src/library/cli/R/ruler.R | 1 src/library/cli/R/rules.R | 58 src/library/cli/R/server.R | 1 src/library/cli/R/simple-theme.R | 48 src/library/cli/R/sitrep.R | 9 src/library/cli/R/sizes.R | 23 src/library/cli/R/spark.R | 2 src/library/cli/R/spinner.R | 47 src/library/cli/R/status-bar.R | 115 - src/library/cli/R/symbol.R | 7 src/library/cli/R/test.R | 96 src/library/cli/R/themes.R | 111 - src/library/cli/R/time-ago.R | 42 src/library/cli/R/time.R | 10 src/library/cli/R/timer.R | 1 src/library/cli/R/tree.R | 77 src/library/cli/R/tty.R | 32 src/library/cli/R/unicode.R | 1 src/library/cli/R/utf8.R | 22 src/library/cli/R/utils.R | 3 src/library/cli/R/vt.R | 11 src/library/cli/R/width.R | 11 src/library/cli/R/zzz.R | 81 src/library/cli/exec/news.R | 66 src/library/cli/exec/outdated.R | 25 src/library/cli/exec/search.R | 22 src/library/cli/exec/up.R | 43 src/library/cli/inst/examples/apps/news.R | 66 src/library/cli/inst/examples/apps/outdated.R | 25 src/library/cli/inst/examples/apps/search.R | 22 src/library/cli/inst/examples/apps/up.R | 42 src/library/cli/inst/shiny/along/app.R | 4 src/library/cli/inst/shiny/format/app.R | 4 src/library/cli/inst/shiny/nested/app.R | 4 src/library/cli/inst/shiny/simple/app.R | 4 src/library/cli/man/roxygen/meta.R | 1 src/library/cli/src/cleancall.c | 6 src/library/cli/src/init.c | 4 src/library/cli/src/progress.c | 28 src/library/cli/src/vt.c | 4 src/library/cli/tools/get-rstudio-themes.R | 90 src/library/cli/tools/parse-iterm.R | 33 src/library/cli/tools/spinners.R | 30 src/library/pkgcache/DESCRIPTION | 7 src/library/pkgcache/NEWS.md | 4 src/library/pkgcache/R/repo-set.R | 2 src/library/pkgcache/inst/bioc-sysreqs.dcf.gz |binary src/library/pkgcache/inst/bioc-sysreqs.ts | 2 src/library/pkgdepends/DESCRIPTION | 6 src/library/pkgdepends/inst/sysreqs/HEAD | 2 src/library/pkgdepends/inst/sysreqs/rules/Abseil.json |only src/library/pkgdepends/inst/sysreqs/rules/berkeleydb.json | 32 src/library/pkgdepends/inst/sysreqs/rules/blosc.json |only src/library/pkgdepends/inst/sysreqs/rules/chrome.json | 8 src/library/pkgdepends/inst/sysreqs/rules/cln.json |only src/library/pkgdepends/inst/sysreqs/rules/cmake.json | 2 src/library/pkgdepends/inst/sysreqs/rules/eigen.json | 15 src/library/pkgdepends/inst/sysreqs/rules/exiftool.json | 13 src/library/pkgdepends/inst/sysreqs/rules/gdal.json | 21 src/library/pkgdepends/inst/sysreqs/rules/geos.json | 30 src/library/pkgdepends/inst/sysreqs/rules/ginac.json |only src/library/pkgdepends/inst/sysreqs/rules/glpk.json | 3 src/library/pkgdepends/inst/sysreqs/rules/gpgme.json | 15 src/library/pkgdepends/inst/sysreqs/rules/grpcpp.json | 15 src/library/pkgdepends/inst/sysreqs/rules/gsl.json | 28 src/library/pkgdepends/inst/sysreqs/rules/gtk.json | 32 src/library/pkgdepends/inst/sysreqs/rules/haveged.json | 3 src/library/pkgdepends/inst/sysreqs/rules/hdf5.json | 15 src/library/pkgdepends/inst/sysreqs/rules/hiredis.json | 13 src/library/pkgdepends/inst/sysreqs/rules/imagemagick.json | 13 src/library/pkgdepends/inst/sysreqs/rules/java.json | 21 src/library/pkgdepends/inst/sysreqs/rules/leptonica.json | 15 src/library/pkgdepends/inst/sysreqs/rules/libarchive.json | 15 src/library/pkgdepends/inst/sysreqs/rules/libavfilter.json | 26 src/library/pkgdepends/inst/sysreqs/rules/libgit2.json | 15 src/library/pkgdepends/inst/sysreqs/rules/libjq.json | 15 src/library/pkgdepends/inst/sysreqs/rules/libmagic.json | 15 src/library/pkgdepends/inst/sysreqs/rules/libmecab.json | 20 src/library/pkgdepends/inst/sysreqs/rules/libmysqlclient.json | 4 src/library/pkgdepends/inst/sysreqs/rules/libprotobuf.json | 15 src/library/pkgdepends/inst/sysreqs/rules/libsndfile.json | 15 src/library/pkgdepends/inst/sysreqs/rules/libsodium.json | 13 src/library/pkgdepends/inst/sysreqs/rules/libssh.json | 13 src/library/pkgdepends/inst/sysreqs/rules/libssh2.json | 13 src/library/pkgdepends/inst/sysreqs/rules/libuv.json |only src/library/pkgdepends/inst/sysreqs/rules/libwebp.json | 2 src/library/pkgdepends/inst/sysreqs/rules/libzstd.json | 2 src/library/pkgdepends/inst/sysreqs/rules/mysql.json | 2 src/library/pkgdepends/inst/sysreqs/rules/netcdf4.json | 26 src/library/pkgdepends/inst/sysreqs/rules/odbc.json | 15 src/library/pkgdepends/inst/sysreqs/rules/openbabel.json | 3 src/library/pkgdepends/inst/sysreqs/rules/opencl.json | 4 src/library/pkgdepends/inst/sysreqs/rules/opencv.json | 26 src/library/pkgdepends/inst/sysreqs/rules/openmpi.json | 2 src/library/pkgdepends/inst/sysreqs/rules/pkg-config.json | 2 src/library/pkgdepends/inst/sysreqs/rules/poppler-data.json |only src/library/pkgdepends/inst/sysreqs/rules/poppler-glib.json | 17 src/library/pkgdepends/inst/sysreqs/rules/poppler.json | 17 src/library/pkgdepends/inst/sysreqs/rules/postgresql.json | 2 src/library/pkgdepends/inst/sysreqs/rules/proj.json | 29 src/library/pkgdepends/inst/sysreqs/rules/protobuf-compiler.json | 15 src/library/pkgdepends/inst/sysreqs/rules/protobuf-grpc.json | 17 src/library/pkgdepends/inst/sysreqs/rules/python.json | 4 src/library/pkgdepends/inst/sysreqs/rules/python3.json | 4 src/library/pkgdepends/inst/sysreqs/rules/rust.json | 80 src/library/pkgdepends/inst/sysreqs/rules/sdl2.json | 2 src/library/pkgdepends/inst/sysreqs/rules/tesseract.json | 15 src/library/pkgdepends/inst/sysreqs/rules/udunits2.json | 13 src/library/pkgdepends/inst/sysreqs/rules/v8.json | 4 src/library/pkgdepends/inst/sysreqs/rules/zeromq.json | 13 src/library/pkgdepends/inst/sysreqs/rules/zlib.json | 21 src/library/processx/DESCRIPTION | 17 src/library/processx/LICENSE | 2 src/library/processx/NEWS.md | 4 src/library/processx/R/aaa-import-standalone-rstudio-detect.R | 78 src/library/processx/R/aaassertthat.R | 39 src/library/processx/R/assertions.R | 21 src/library/processx/R/base64.R | 1 src/library/processx/R/cleancall.R | 1 src/library/processx/R/client-lib.R | 20 src/library/processx/R/connections.R | 112 - src/library/processx/R/initialize.R | 97 src/library/processx/R/io.R | 37 src/library/processx/R/named_pipe.R | 12 src/library/processx/R/on-load.R | 11 src/library/processx/R/poll.R | 4 src/library/processx/R/print.R | 6 src/library/processx/R/process-helpers.R | 1 src/library/processx/R/process.R | 343 +-- src/library/processx/R/run.R | 273 ++ src/library/processx/R/standalone-errors.R | 414 ++-- src/library/processx/R/supervisor.R | 49 src/library/processx/R/utils.R | 87 src/library/processx/src/cleancall.c | 6 src/library/processx/src/init.c | 2 src/library/processx/src/install.libs.R | 10 src/library/processx/tools |only src/library/ps/DESCRIPTION | 12 src/library/ps/LICENSE | 2 src/library/ps/NAMESPACE | 1 src/library/ps/NEWS.md | 4 src/library/ps/R/cleancall.R | 1 src/library/ps/R/compat-vctrs.R | 1003 +++++----- src/library/ps/R/disk.R | 16 src/library/ps/R/errno.R | 1 src/library/ps/R/error.R | 4 src/library/ps/R/glob.R | 21 src/library/ps/R/iso-date.R | 49 src/library/ps/R/kill-tree.R | 9 src/library/ps/R/linux.R | 127 - src/library/ps/R/low-level.R | 180 + src/library/ps/R/macos.R | 36 src/library/ps/R/memoize.R | 7 src/library/ps/R/memory.R | 76 src/library/ps/R/os.R | 17 src/library/ps/R/package.R | 7 src/library/ps/R/posix.R | 6 src/library/ps/R/ps.R | 193 + src/library/ps/R/rematch2.R | 14 src/library/ps/R/string.R |only src/library/ps/R/system.R | 63 src/library/ps/R/testthat-reporter.R | 149 + src/library/ps/R/utils.R | 126 - src/library/ps/inst/tools/error-codes.R | 23 src/library/ps/inst/tools/winver.R | 21 src/library/ps/src/cleancall.c | 6 src/library/ps/src/install.libs.R | 9 225 files changed, 5443 insertions(+), 3419 deletions(-)
Title: Optimized Automated Gaussian Mixture Assessment
Description: Necessary functions for optimized automated evaluation of the number and parameters of Gaussian mixtures in one-dimensional data. Various methods are available for parameter estimation and for determining the number of modes in the mixture. A detailed description of the methods ca ben found in Lotsch, J., Malkusch, S. and A. Ultsch. (2022) <doi:10.1016/j.imu.2022.101113>.
Author: Jorn Lotsch [aut, cre] ,
Sebastian Malkusch [aut]
Maintainer: Jorn Lotsch <j.lotsch@em.uni-frankfurt.de>
Diff between opGMMassessment versions 0.4 dated 2024-04-14 and 0.4.1 dated 2026-04-17
opGMMassessment-0.4.1/opGMMassessment/DESCRIPTION | 28 ++++++---- opGMMassessment-0.4.1/opGMMassessment/MD5 | 9 +-- opGMMassessment-0.4.1/opGMMassessment/R/opGMMassessment.R | 29 ++++++++--- opGMMassessment-0.4.1/opGMMassessment/inst/CITATION | 7 +- opGMMassessment-0.4.1/opGMMassessment/man/opGMMassessment.Rd | 8 +-- opGMMassessment-0.4/opGMMassessment/README.md |only 6 files changed, 51 insertions(+), 30 deletions(-)
More information about opGMMassessment at CRAN
Permanent link
Title: Read, Write and Edit 'xlsx' Files
Description: Simplifies the creation of 'xlsx' files by
providing a high level interface to writing, styling and editing
worksheets.
Author: Jordan Mark Barbone [aut] ,
Jan Marvin Garbuszus [aut, cre],
Olivier Roy [ctb],
openxlsx authors [cph] ,
Arseny Kapoulkine [ctb, cph]
Maintainer: Jan Marvin Garbuszus <jan.garbuszus@ruhr-uni-bochum.de>
Diff between openxlsx2 versions 1.25 dated 2026-03-07 and 1.26 dated 2026-04-17
DESCRIPTION | 6 MD5 | 70 +-- NAMESPACE | 3 NEWS.md | 15 R/baseXML.R | 584 ++------------------------ R/class-workbook-wrappers.R | 31 + R/class-workbook.R | 230 ++++++++-- R/illegal-characters.R | 10 R/openxlsx2-package.R | 5 R/pivot_table.R | 11 R/pugixml.R | 18 R/utils.R | 321 ++++++++++++++ R/wb_load.R | 16 R/wb_styles.R | 33 + R/write.R | 27 - R/write_xlsx.R | 17 build/vignette.rds |binary inst/doc/conditional-formatting.html | 104 +--- inst/doc/openxlsx2_charts_manual.html | 10 inst/doc/openxlsx2_formulas_manual.html | 4 inst/doc/openxlsx2_style_manual.html | 8 man/as.character.pugi_xml.Rd |only man/wbWorkbook.Rd | 39 + man/wb_add_chart_xml.Rd | 6 man/wb_add_data_table.Rd | 3 man/wb_add_encharter.Rd |only tests/testthat/helper.R | 6 tests/testthat/test-class-hyperlink.R | 14 tests/testthat/test-class-workbook-wrappers.R | 17 tests/testthat/test-class-workbook.R | 78 +++ tests/testthat/test-formulas.R | 26 - tests/testthat/test-loading_workbook_tables.R | 2 tests/testthat/test-pugixml.R | 3 tests/testthat/test-save.R | 12 tests/testthat/test-tables.R | 33 + tests/testthat/test-wb_styles.R | 24 - tests/testthat/test-write.R | 228 +++++++++- 37 files changed, 1272 insertions(+), 742 deletions(-)