Title: Evaluation of Presence-Absence Models
Description: Collection of functions to evaluate presence-absence models. It
comprises functions to adjust discrimination statistics for the
representativeness effect through case-weighting, along with functions for
visualizing the outcomes. Originally outlined in:
Jiménez-Valverde (2022) The uniform AUC: dealing with the
representativeness effect in presence-absence models. Methods Ecol. Evol,
13, 1224-1236.
Author: Alberto Jimenez-Valverde [aut, cre]
Maintainer: Alberto Jimenez-Valverde <alberto.jimenez.valverde@gmail.com>
Diff between vandalico versions 0.2.1 dated 2026-01-08 and 0.2.2 dated 2026-04-14
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ NEWS.md | 10 ++++++++++ R/AUCuniform.2.R | 14 ++++++++++---- R/AUCuniform.R | 5 +++-- man/AUCuniform.2.Rd | 4 ++-- man/AUCuniform.Rd | 5 +++-- 7 files changed, 38 insertions(+), 20 deletions(-)
Title: Estimation of the ROC Curve and the AUC for Complex Survey Data
Description: Estimate the receiver operating characteristic (ROC) curve, area under the curve (AUC) and optimal cut-off points for individual classification taking into account complex sampling designs when working with complex survey data. Methods implemented in this package are described in: A. Iparragirre, I. Barrio, I. Arostegui (2024) <doi:10.1002/sta4.635>; A. Iparragirre, I. Barrio, J. Aramendi, I. Arostegui (2022) <doi:10.2436/20.8080.02.121>; A. Iparragirre, I. Barrio (2024) <doi:10.1007/978-3-031-65723-8_7>.
Author: Amaia Iparragirre [aut, cre, cph] ,
Irantzu Barrio [aut],
Inmaculada Arostegui [aut]
Maintainer: Amaia Iparragirre <amaia.iparragirre@ehu.eus>
Diff between svyROC versions 1.0.0 dated 2024-10-25 and 1.1.0 dated 2026-04-14
DESCRIPTION | 14 +++++++------- MD5 | 21 +++++++++++++++------ NAMESPACE | 9 +++++++++ NEWS.md | 4 ++++ R/ci.wauc.R |only R/example_variables_wroc_2.R |only R/ht.indep.R |only R/ht.paired.R |only R/wauc.R | 13 +++++++------ README.md | 4 ++++ data/example_variables_wroc_2.rda |only inst/CITATION | 10 +++++----- man/ci.wauc.Rd |only man/example_variables_wroc_2.Rd |only man/ht.indep.Rd |only man/ht.paired.Rd |only 16 files changed, 51 insertions(+), 24 deletions(-)
Title: Graphical User Interface with Integrated 'Diagrammer' for
'Lavaan'
Description: Provides a graphical user interface with an
integrated diagrammer for latent variable models from the 'lavaan' package.
It offers two core functions: first, lavaangui() launches a web application
that allows users to specify models by drawing path diagrams, fitting them,
assessing model fit, and more; second, plot_lavaan() creates interactive
path diagrams from models specified in 'lavaan'. After customizing a diagram
interactively, export_plot() saves it to a file, enabling reproducible
scripts without sacrificing fine-grained control over appearance.
Karch (2024) <doi: 10.1080/10705511.2024.2420678> contains a tutorial.
Author: Julian D. Karch [aut, cre, cph]
Maintainer: Julian D. Karch <j.d.karch@fsw.leidenuniv.nl>
Diff between lavaangui versions 0.3.2 dated 2025-11-30 and 0.4.0 dated 2026-04-14
lavaangui-0.3.2/lavaangui/inst/www/assets/index-13a8ffa6.js |only lavaangui-0.3.2/lavaangui/inst/www/assets/index-7e3ae6b2.css |only lavaangui-0.3.2/lavaangui/inst/www/assets/svelte-fdfc2579.js |only lavaangui-0.4.0/lavaangui/DESCRIPTION | 20 ++- lavaangui-0.4.0/lavaangui/MD5 | 41 ++++--- lavaangui-0.4.0/lavaangui/NAMESPACE | 2 lavaangui-0.4.0/lavaangui/NEWS.md | 20 +++ lavaangui-0.4.0/lavaangui/R/componentLavInspect.R | 2 lavaangui-0.4.0/lavaangui/R/constants.R | 4 lavaangui-0.4.0/lavaangui/R/export_plot.R |only lavaangui-0.4.0/lavaangui/R/functionsServer.R | 34 +++++- lavaangui-0.4.0/lavaangui/R/lavaangui-package.R |only lavaangui-0.4.0/lavaangui/R/lavaangui.R | 2 lavaangui-0.4.0/lavaangui/R/plot_lavaan.R | 38 +++++-- lavaangui-0.4.0/lavaangui/R/remove_layouts.R |only lavaangui-0.4.0/lavaangui/R/serverImageExporter.R |only lavaangui-0.4.0/lavaangui/R/serverLavaanRun.R | 54 ++++------ lavaangui-0.4.0/lavaangui/R/serverLayout.R | 2 lavaangui-0.4.0/lavaangui/R/serverUsersLayoutSaver.R |only lavaangui-0.4.0/lavaangui/R/start_app.R | 59 ++++++++--- lavaangui-0.4.0/lavaangui/build |only lavaangui-0.4.0/lavaangui/inst/www/assets/index-07680a7c.css |only lavaangui-0.4.0/lavaangui/inst/www/assets/index-e0991477.js |only lavaangui-0.4.0/lavaangui/inst/www/assets/svelte-d0c1ce0e.js |only lavaangui-0.4.0/lavaangui/inst/www/index.html | 6 - lavaangui-0.4.0/lavaangui/man/export_plot.Rd |only lavaangui-0.4.0/lavaangui/man/lavaangui-package.Rd |only lavaangui-0.4.0/lavaangui/man/plot_lavaan.Rd | 28 ++++- lavaangui-0.4.0/lavaangui/man/remove_layouts.Rd |only 29 files changed, 215 insertions(+), 97 deletions(-)
Title: Easy Access to Model Information for Various Model Objects
Description: A tool to provide an easy, intuitive and consistent
access to information contained in various R models, like model
formulas, model terms, information about random effects, data that was
used to fit the model or data from response variables. 'insight'
mainly revolves around two types of functions: Functions that find
(the names of) information, starting with 'find_', and functions that
get the underlying data, starting with 'get_'. The package has a
consistent syntax and works with many different model objects, where
otherwise functions to access these information are missing.
Author: Daniel Luedecke [aut, cre] ,
Dominique Makowski [aut, ctb] ,
Indrajeet Patil [aut, ctb] ,
Philip Waggoner [aut, ctb] ,
Mattan S. Ben-Shachar [aut, ctb] ,
Brenton M. Wiernik [aut, ctb] ,
Vincent Arel-Bundock [aut, ctb] ,
Etienne Bacher [aut, ctb] ,
Ale [...truncated...]
Maintainer: Daniel Luedecke <officialeasystats@gmail.com>
Diff between insight versions 1.4.6 dated 2026-02-04 and 1.5.0 dated 2026-04-14
DESCRIPTION | 20 - MD5 | 71 ++- NAMESPACE | 54 ++ NEWS.md | 25 + R/find_formula.R | 25 + R/find_parameters_gam.R | 10 R/find_parameters_other.R | 2 R/get_data.R | 16 R/get_datagrid.R | 3 R/get_parameters_gam.R | 15 R/get_parameters_others.R | 2 R/get_predicted.R | 110 ++++++ R/get_simulated.R |only R/get_simulated_helper.R |only R/get_statistic.R | 23 - R/helper_functions.R | 188 ---------- R/is_model.R | 6 R/link_function.R | 5 R/model_info.R | 18 R/utils_model_info.R | 5 build/partial.rdb |binary build/vignette.rds |binary inst/WORDLIST | 2 inst/doc/display.html | 374 ++++++++++---------- man/get_predicted.Rd | 16 man/get_simulated.Rd |only man/get_statistic.Rd | 8 man/model_info.Rd | 3 tests/testthat/test-FE-formula.R | 2 tests/testthat/test-blmer.R | 2 tests/testthat/test-epiR.R | 6 tests/testthat/test-gam.R | 8 tests/testthat/test-gamm.R | 1 tests/testthat/test-get_predicted.R | 1 tests/testthat/test-get_residuals.R | 3 tests/testthat/test-get_simulated.R |only tests/testthat/test-mgcv.R | 39 ++ tests/testthat/test-nestedLogit.R | 657 +++++++----------------------------- tests/testthat/test-rstpm2.R |only 39 files changed, 751 insertions(+), 969 deletions(-)
Title: Processing Time Series Data Using the Matching Pursuit Algorithm
Description: Provides tools for analysing and decomposing time series data using the Matching Pursuit (MP) algorithm, a greedy signal decomposition technique that represents complex signals as a linear combination of simpler functions (called atoms) selected from a redundant dictionary. For more details see Mallat and Zhang (1993) <doi:10.1109/78.258082>, Pati et al. (1993) <doi:10.1109/ACSSC.1993.342465>, Elad (2010) <doi:10.1007/978-1-4419-7011-4> and Różański (2024) <doi:10.1145/3674832>.
Author: Artur Gramacki [aut, cre] ,
Jaroslaw Gramacki [ctb] ,
Piotr T. Rożanski [ctb]
Maintainer: Artur Gramacki <a.gramacki@gmail.com>
Diff between MatchingPursuit versions 1.0.0 dated 2026-04-09 and 1.0.1 dated 2026-04-14
DESCRIPTION | 8 +-- MD5 | 42 +++++++++---------- NEWS.md | 10 ++++ R/check.checksum.R | 3 - R/clear.cache.R | 10 ++++ R/empi.execute.R | 5 ++ R/empi.install.R | 56 +++++++++++++++++--------- R/empi2tf.R | 17 ++++---- R/filters.coeff.R | 13 +++--- R/gabor.fun.R | 8 +-- R/read.csv.signals.R | 4 + R/read.edf.signals.R | 6 +- R/read.empi.db.file.R | 20 ++++----- R/sig2bin.R | 7 +++ inst/doc/MatchingPursuit.R | 14 +++++- inst/doc/MatchingPursuit.Rmd | 14 +++++- inst/doc/MatchingPursuit.html | 89 ++++++++++++++++++++++++------------------ man/empi.execute.Rd | 3 - man/empi.install.Rd | 17 +++++--- man/read.empi.db.file.Rd | 6 +- man/sig2bin.Rd | 7 +++ vignettes/MatchingPursuit.Rmd | 14 +++++- 22 files changed, 244 insertions(+), 129 deletions(-)
More information about MatchingPursuit at CRAN
Permanent link
Title: Legends for Maps
Description: Create legends for maps and other graphics. Thematic maps need to
be accompanied by legible legends to be fully comprehensible. This package
offers a wide range of legends useful for cartography, some of which may
also be useful for other types of graphics.
Author: Timothee Giraud [cre, aut]
Maintainer: Timothee Giraud <timothee.giraud@cnrs.fr>
Diff between maplegend versions 0.6.1 dated 2026-04-10 and 0.6.2 dated 2026-04-14
DESCRIPTION | 6 +++--- MD5 | 28 ++++++++++++++-------------- NEWS.md | 8 ++++++++ R/leg.R | 9 +++++++++ R/lg_choro.R | 3 --- R/lg_choro_horiz.R | 3 --- R/lg_choro_line.R | 3 --- R/lg_choro_point.R | 3 --- R/lg_choro_point_horiz.R | 3 --- R/lg_choro_symb.R | 3 --- R/lg_cont.R | 2 +- R/lg_cont_horiz.R | 2 +- R/lg_grad_line.R | 3 --- R/lg_utils.R | 47 ++++++++++++++++++++++++++++------------------- inst/tinytest/tests.R | 35 +++++++++++------------------------ 15 files changed, 75 insertions(+), 83 deletions(-)
Title: A Comprehensive Toolkit for Clinical HLA Informatics
Description: A comprehensive toolkit for clinical Human Leukocyte Antigen (HLA) informatics, built on 'tidyverse' <https://tidyverse.tidyverse.org/> principles and making use of genotype list string (GL string, Mack et al. (2023) <doi:10.1111/tan.15126>) for storing and computing HLA genotype data. Specific functionalities include: coercion of HLA data in tabular format to and from GL string; calculation of matching and mismatching in all directions, with multiple output formats; automatic formatting of HLA data for searching within a GL string; truncation of molecular HLA data to a specific number of fields; and reading HLA genotypes in HML files and extracting the GL string. This library is intended for research use. Any application making use of this package in a clinical setting will need to be independently validated according to local regulations.
Author: Nicholas Brown [cre, aut] ,
Busra Coskun [aut]
Maintainer: Nicholas Brown <nicholas.brown@pennmedicine.upenn.edu>
Diff between immunogenetr versions 1.1.0 dated 2026-04-06 and 1.2.0 dated 2026-04-14
DESCRIPTION | 6 - MD5 | 28 ++-- NAMESPACE | 2 NEWS.md | 128 +++++++++++---------- R/HLA_match_summary_HCT.R | 159 +++++++++++++++----------- man/GLstring_gene_copies_combine.Rd | 64 +++++----- man/HLA_dictionary.Rd | 50 ++++---- man/HLA_match_summary_HCT.Rd | 14 ++ man/HLA_mismatched_alleles.Rd | 122 ++++++++++---------- man/HLA_typing_1.Rd | 52 ++++---- man/HLA_typing_LIS.Rd | 56 ++++----- man/Haplotype_frequencies.Rd | 56 ++++----- man/mismatch_table_2010.Rd | 52 ++++---- man/mismatch_table_2016.Rd | 52 ++++---- tests/testthat/test-HLA_match_summary_HCT.R | 165 ++++++++++++++++++++++++++++ 15 files changed, 605 insertions(+), 401 deletions(-)
Title: Distributions Hermite Polynomial Approximation
Description: Multivariate conditional and marginal densities, moments, cumulative distribution functions as well as binary choice and sample selection models based on the Hermite polynomial approximation which was proposed and described by A. Gallant and D. W. Nychka (1987) <doi:10.2307/1913241>.
Author: Bogdan Potanin [aut, cre, ctb],
Sofiia Dolgikh [ctb]
Maintainer: Bogdan Potanin <bogdanpotanin@gmail.com>
Diff between hpa versions 1.3.3 dated 2023-11-29 and 1.3.4 dated 2026-04-14
DESCRIPTION | 20 +- MD5 | 98 +++++----- R/RcppExports.R | 100 +++++----- R/hpaBinary_generics.R | 10 - R/hpaML_generics.R | 14 - R/hpaSelection_generics.R | 21 +- man/bspline.Rd | 16 - man/coef.hpaBinary.Rd | 4 man/coef.hpaML.Rd | 4 man/coef.hpaSelection.Rd | 10 - man/dnorm_parallel.Rd | 2 man/hpaBinary.Rd | 135 +++++++------- man/hpaDist.Rd | 383 ++++++++++++++++++++--------------------- man/hpaDist0.Rd | 44 ++-- man/hpaML.Rd | 128 ++++++------- man/hpaSelection.Rd | 107 +++++------ man/hsaDist.Rd | 30 +-- man/logLik.hpaBinary.Rd | 2 man/logLik.hpaML.Rd | 2 man/logLik.hpaSelection.Rd | 3 man/normalMoment.Rd | 18 - man/plot.hpaBinary.Rd | 6 man/plot.hpaML.Rd | 2 man/plot.hpaSelection.Rd | 2 man/pnorm_parallel.Rd | 6 man/polynomialIndex.Rd | 28 +- man/predict.hpaBinary.Rd | 2 man/predict.hpaML.Rd | 2 man/predict.hpaSelection.Rd | 4 man/predict_hpaBinary.Rd | 2 man/predict_hpaML.Rd | 2 man/predict_hpaSelection.Rd | 2 man/print_summary_hpaBinary.Rd | 2 man/summary.hpaSelection.Rd | 2 man/summary_hpaSelection.Rd | 2 man/truncatedNormalMoment.Rd | 31 +-- man/vcov.hpaBinary.Rd | 4 man/vcov.hpaML.Rd | 4 man/vcov.hpaSelection.Rd | 4 src/ParallelFunctions.cpp | 21 +- src/RcppExports.cpp | 90 ++++----- src/hpa0.cpp | 85 ++++----- src/hpaBinary.cpp | 56 ++--- src/hpaML.cpp | 47 ++--- src/hpaMain.cpp | 84 ++++---- src/hpaSelection.cpp | 18 - src/hpaValidation.cpp | 7 src/normalMoments.cpp | 42 ++-- src/polynomialIndex.cpp | 30 +-- src/spline.cpp | 20 +- 50 files changed, 883 insertions(+), 875 deletions(-)
Title: Pretty 'ggplot2' Themes
Description: A set of complete 'ggplot2' themes and refine
functions for plot appearance. The themes are designed to work
seamlessly with the refine functions, which adjust gridlines and axis
elements to suit the particulars of a plot.
Author: David Hodge [aut, cre, cph]
Maintainer: David Hodge <davidhodge931@gmail.com>
Diff between ggrefine versions 0.1.0 dated 2026-03-30 and 0.2.0 dated 2026-04-14
ggrefine-0.1.0/ggrefine/man/theme_black.Rd |only ggrefine-0.1.0/ggrefine/man/theme_oat.Rd |only ggrefine-0.1.0/ggrefine/man/theme_stone.Rd |only ggrefine-0.1.0/ggrefine/man/theme_white.Rd |only ggrefine-0.2.0/ggrefine/DESCRIPTION | 15 - ggrefine-0.2.0/ggrefine/MD5 | 37 +- ggrefine-0.2.0/ggrefine/NAMESPACE | 7 ggrefine-0.2.0/ggrefine/NEWS.md | 4 ggrefine-0.2.0/ggrefine/R/refine.R | 32 +- ggrefine-0.2.0/ggrefine/R/theme.R | 145 +--------- ggrefine-0.2.0/ggrefine/README.md | 76 +++-- ggrefine-0.2.0/ggrefine/man/figures/README-example-1.png |binary ggrefine-0.2.0/ggrefine/man/figures/README-unnamed-chunk-2-1.png |binary ggrefine-0.2.0/ggrefine/man/figures/logo.png |binary ggrefine-0.2.0/ggrefine/man/figures/logo.svg | 4 ggrefine-0.2.0/ggrefine/man/refine_classic.Rd | 32 +- ggrefine-0.2.0/ggrefine/man/refine_fusion.Rd | 32 +- ggrefine-0.2.0/ggrefine/man/refine_modern.Rd | 32 +- ggrefine-0.2.0/ggrefine/man/refine_none.Rd | 32 +- ggrefine-0.2.0/ggrefine/man/refine_void.Rd | 32 +- ggrefine-0.2.0/ggrefine/man/theme_dark.Rd |only ggrefine-0.2.0/ggrefine/man/theme_grey.Rd |only ggrefine-0.2.0/ggrefine/man/theme_light.Rd |only 23 files changed, 199 insertions(+), 281 deletions(-)
Title: Backfill Bayesian Optimal Interval Design Using Efficacy and
Toxicity
Description: Implements the Backfill Bayesian Optimal Interval Design (BF-BOIN-ET),
a novel clinical trial methodology for dose optimization that simultaneously consider both efficacy
and toxicity outcome as described in (Takeda et al (2025) <doi:10.1002/pst.2470>).
The package has been extended to include a seamless two-stage phase I/II trial design with backfill
and joint efficacy and toxicity monitoring as described in (Takeda et al (2026) <doi:10.1002/pst.70092>).
Author: Jing Zhu [cre, aut],
Kentaro Takeda [aut],
Yimer Belay Birlie [aut]
Maintainer: Jing Zhu <zhujing716@gmail.com>
Diff between bfboinet versions 0.4.0 dated 2025-06-03 and 1.0.0 dated 2026-04-14
DESCRIPTION | 27 MD5 | 18 NAMESPACE | 7 NEWS.md |only R/backboinet.R | 1941 ++++++++++++++++++------------------- R/backboinetr.R | 2229 +++++++++++++++++++++---------------------- R/bfboinet_rp2.R |only R/select_mtd.R |only README.md |only man/get.oc.backboinet.Rd | 21 man/get.oc.backboinet_rp2.Rd |only man/get.oc.backboinetr.Rd | 23 man/select_mtd.Rd |only 13 files changed, 2142 insertions(+), 2124 deletions(-)
Title: Download and Import Open Street Map Data Extracts
Description: Match, download, convert and import Open Street Map data extracts
obtained from several providers.
Author: Andrea Gilardi [aut, cre] ,
Robin Lovelace [aut] ,
Barry Rowlingson [ctb] ,
Salva Fernandez [rev] for
rOpenSci, see
<https://github.com/ropensci/software-review/issues/395>),
Nicholas Potter [rev] for
rOpenSci, see
<https://github.com/ropensci/soft [...truncated...]
Maintainer: Andrea Gilardi <andrea.gilardi@unimib.it>
Diff between osmextract versions 0.5.3 dated 2025-04-09 and 0.6.0 dated 2026-04-14
DESCRIPTION | 17 MD5 | 81 +-- NAMESPACE | 1 NEWS.md | 347 ++++++------- R/download.R | 166 ++---- R/find.R | 59 -- R/get-boundary.R | 17 R/get-key-values.R | 2 R/get.R | 46 + R/osmextract-package.R | 6 R/utils.R | 39 - R/vectortranslate.R | 225 +++++--- build/vignette.rds |binary data/bbbike_zones.rda |binary data/geofabrik_zones.rda |binary data/openstreetmap_fr_zones.rda |binary inst/doc/osmextract.R | 52 +- inst/doc/osmextract.Rmd | 112 ++-- inst/doc/osmextract.html | 778 +++++++++++++++--------------- inst/doc/providers.html | 6 inst/doc/providers_comparisons.html | 16 inst/doc/tips-and-tricks.R |only inst/doc/tips-and-tricks.Rmd |only inst/doc/tips-and-tricks.html |only man/bbbike_zones.Rd | 2 man/figures/README-iow1-1.png |binary man/figures/README-points-lines-iow-1.png |binary man/figures/README-points-lines-iow-2.png |binary man/geofabrik_zones.Rd | 2 man/get_default_osmconf_ini.Rd |only man/oe_download.Rd | 26 - man/oe_download_directory.Rd | 8 man/oe_find.Rd | 45 - man/oe_get.Rd | 29 - man/oe_get_boundary.Rd | 17 man/oe_match.Rd | 7 man/oe_read.Rd | 6 man/oe_vectortranslate.Rd | 33 - man/openstreetmap_fr_zones.Rd | 2 tests/testthat/test-download.R | 1 tests/testthat/test-get.R | 40 + tests/testthat/test-read.R | 2 vignettes/osmextract.Rmd | 112 ++-- vignettes/tips-and-tricks.Rmd |only 44 files changed, 1250 insertions(+), 1052 deletions(-)
Title: Access 'Office for Budget Responsibility' Data
Description: Provides clean, tidy access to data published by the 'Office for
Budget Responsibility' ('OBR'), the UK's independent fiscal watchdog. Covers
the Public Finances Databank (outturn for PSNB, PSND, receipts, and
expenditure since 1946), the Historical Official Forecasts Database (every
'OBR' forecast since 2010), the Economic and Fiscal Outlook detailed forecast
tables (five-year projections from the latest Budget), the Welfare Trends
Report (incapacity benefit spending and caseloads), and the Fiscal Risks and
Sustainability Report (50-year state pension projections). Data is downloaded
from the 'OBR' on first use and cached locally for subsequent calls. Data is
sourced from the 'OBR' website <https://obr.uk>.
Author: Charles Coverdale [aut, cre]
Maintainer: Charles Coverdale <charlesfcoverdale@gmail.com>
This is a re-admission after prior archival of version 0.2.4 dated 2026-03-17
Diff between obr versions 0.2.4 dated 2026-03-17 and 0.2.5 dated 2026-04-14
DESCRIPTION | 6 +-- MD5 | 16 +++++----- NEWS.md | 7 ++++ R/efo.R | 18 +++++++---- R/fiscal_sustainability.R | 12 ++++--- R/utils.R | 68 ++++++++++++++++++++++++++++++++++++++++++++ R/welfare.R | 10 +++--- README.md | 2 - tests/testthat/test-utils.R | 5 +++ 9 files changed, 116 insertions(+), 28 deletions(-)
Title: Automatically Fetching References Metadata from Literature
Databases
Description: Provides functions to automatically retrieve and deduplicate reference metadata based on saved search strings. Access to Web of Science and Scopus requires personal API keys, while PubMed can be queried without one. The optional deduplication functionality requires the package 'ASySD' available from <https://github.com/camaradesuk/ASySD>.
Author: Thomas Dumond [cre, aut, cph] ,
Charles Caraguel [ctb] ,
Torben Nielsen [ctb]
Maintainer: Thomas Dumond <thomas.dumond@adelaide.edu.au>
Diff between LitFetchR versions 0.2.1 dated 2026-02-10 and 0.2.2 dated 2026-04-14
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS.md | 7 ++++++- R/extract_scp_list.R | 5 ----- 4 files changed, 12 insertions(+), 12 deletions(-)
Title: Clustering Big Data using Expectation Maximization Star (EM*)
Algorithm
Description: Implements the Improved Expectation Maximisation EM* and the traditional EM algorithm for clustering
big data (gaussian mixture models for both multivariate and univariate datasets). This version
implements the faster alternative-EM* that expedites convergence via structure based data segregation.
The implementation supports both random and K-means++ based initialization. Reference: Parichit Sharma,
Hasan Kurban, Mehmet Dalkilic (2022) <doi:10.1016/j.softx.2021.100944>. Hasan Kurban,
Mark Jenne, Mehmet Dalkilic (2016) <doi:10.1007/s41060-017-0062-1>.
Author: Sharma Parichit [aut, cre, ctb],
Kurban Hasan [aut, ctb],
Dalkilic Mehmet [aut]
Maintainer: Sharma Parichit <parishar@iu.edu>
This is a re-admission after prior archival of version 2.0.5 dated 2022-01-15
Diff between DCEM versions 2.0.5 dated 2022-01-15 and 2.0.6 dated 2026-04-14
DESCRIPTION | 9 ++- MD5 | 13 +++-- NEWS.md | 78 +++++++++++++-------------------- build/vignette.rds |binary inst/CITATION | 6 +- inst/WORDLIST |only inst/doc/DCEM.R | 2 inst/doc/DCEM.html | 123 +++++++++++++++++++++++++++++++++++++---------------- 8 files changed, 135 insertions(+), 96 deletions(-)
Title: Access Data from the 'Impect' API
Description: Pull data from the 'Impect' Customer API <https://glossary.impect.com/api-design>. The package can retrieve data such as events or match sums.
Author: Impect GmbH [cph],
Florian Schmitt [aut, cre],
Thomas Walentin [ctb]
Maintainer: Florian Schmitt <florian.schmitt@impect.com>
Diff between impectR versions 2.5.4 dated 2026-02-16 and 2.5.5 dated 2026-04-14
DESCRIPTION | 6 +++--- MD5 | 38 +++++++++++++++++++------------------- NEWS.md | 5 +++++ R/getEvents.R | 10 +++++++++- R/getFormations.R | 4 +++- R/getMatches.R | 20 ++++++++++++++++++++ R/getPlayerIterationAverages.R | 8 ++++++++ R/getPlayerIterationScores.R | 8 ++++++++ R/getPlayerMatchScores.R | 10 ++++++++-- R/getPlayerMatchsums.R | 7 ++++++- R/getPlayerProfileScores.R | 8 +++++++- R/getSetPieces.R | 8 ++++++++ R/getSquadCoefficients.R | 7 ++++++- R/getSquadIterationAverages.R | 7 ++++++- R/getSquadIterationScores.R | 7 ++++++- R/getSquadMatchScores.R | 7 ++++++- R/getSquadMatchsums.R | 7 ++++++- R/getSquadRatings.R | 7 ++++++- R/utils.R | 34 +++++++++++++++++++++++----------- README.md | 10 +++++----- 20 files changed, 168 insertions(+), 50 deletions(-)
Title: Enhanced Seasonal Decomposition of Time Series by Loess
Description: Decompose a time series into seasonal, trend, and remainder
components using an implementation of Seasonal Decomposition of Time
Series by Loess (STL) that provides several enhancements over the STL
method in the stats package. These enhancements include handling missing
values, providing higher order (quadratic) loess smoothing with automated
parameter choices, frequency component smoothing beyond the seasonal and
trend components, and some basic plot methods for diagnostics.
Author: Ryan Hafen [aut, cre]
Maintainer: Ryan Hafen <rhafen@gmail.com>
Diff between stlplus versions 0.5.1 dated 2016-01-06 and 0.5.2 dated 2026-04-14
DESCRIPTION | 16 - MD5 | 39 +-- NAMESPACE | 4 NEWS.md |only R/RcppExports.R | 8 R/accessors.R | 29 +- R/cpp_wrappers.R | 2 R/loess_stl.R | 135 +++++++++---- R/plots.R | 203 +++++++++++++------ R/stlplus.R | 504 +++++++++++++++++++++++++++++++++++-------------- README.md | 18 + man/accessors.Rd | 25 +- man/plot.stlplus.Rd | 15 + man/plot_cycle.Rd | 17 + man/plot_rembycycle.Rd | 12 - man/plot_seasonal.Rd | 16 + man/plot_trend.Rd | 22 +- man/stlplus.Rd | 216 +++++++++++++++------ src/RcppExports.cpp | 49 +++- src/loess.cpp | 7 tests/testthat/tests.R | 96 +++++++-- 21 files changed, 1005 insertions(+), 428 deletions(-)
Title: Access, Retrieve, and Work with Canadian Census Data and
Geography
Description: Integrated, convenient, and uniform access to Canadian
Census data and geography retrieved using the 'CensusMapper' API. This package produces analysis-ready
tidy data frames and spatial data in multiple formats, as well as convenience functions
for working with Census variables, variable hierarchies, and region selection. API
keys are freely available with free registration at <https://censusmapper.ca/api>.
Census data and boundary geometries are reproduced and distributed on an "as
is" basis with the permission of Statistics Canada (Statistics Canada 1996; 2001; 2006;
2011; 2016; 2021).
Author: Jens von Bergmann [aut] ,
Dmitry Shkolnik [aut, cre] ,
Aaron Jacobs [aut]
Maintainer: Dmitry Shkolnik <shkolnikd@gmail.com>
Diff between cancensus versions 0.5.10 dated 2025-11-05 and 0.6.0 dated 2026-04-14
DESCRIPTION | 8 - MD5 | 43 +++++--- NAMESPACE | 1 NEWS.md | 33 ++++++ R/cancensus.R | 69 +++++++++++--- R/census_vectors.R | 43 ++++++-- R/geo_suite.R | 3 R/geographies.R | 2 R/helpers.R | 64 ++++++++++++ R/intersect_geometry.R | 2 R/vector_discovery.R | 20 +++- R/vector_viz.R |only README.md | 13 +- inst/doc/Dwellings_by_document_type_cross_tabulation.html | 4 inst/doc/Making_maps_with_cancensus.html | 16 +-- inst/doc/Taxfiler_Data.html | 4 inst/doc/data_discovery.html | 2 inst/doc/intersecting_geometries.html | 6 - inst/doc/statcan_wds.html | 4 man/format_bytes.Rd |only man/get_census.Rd | 5 - man/retry_api_call.Rd |only man/visualize_vector_hierarchy.Rd |only tests |only 24 files changed, 266 insertions(+), 76 deletions(-)
Title: Parse 'Tableau' Workbooks into Functional Data
Description: High-performance parsing of 'Tableau' workbook files into
tidy data frames and dependency graphs for other visualization tools
like R 'Shiny' or 'Power BI' replication.
Author: George Arthur [aut, cre]
Maintainer: George Arthur <prigasgenthian48@gmail.com>
Diff between twbparser versions 0.3.1 dated 2025-12-10 and 0.4.0 dated 2026-04-13
DESCRIPTION | 8 LICENSE | 4 MD5 | 173 +- NAMESPACE | 195 +- NEWS.md | 74 - R/active-bindings.R | 253 +-- R/analytics.R |only R/calculated_fields.R | 506 +++---- R/dashboard_details.R |only R/datasources.R | 320 ++-- R/dependency_graph.R | 605 ++++---- R/fields.R | 462 ++---- R/globals.R | 39 R/insights.R | 1222 +++++++++--------- R/joins.R | 289 +--- R/published.R | 91 - R/relationships.R | 398 ++--- R/server_api.R | 118 - R/sheet_details.R |only R/sql.R | 67 R/twb_parser.R | 645 +++++---- R/utils.R | 749 +++++------ R/validators.R | 220 +-- README.md | 371 ++--- build/vignette.rds |binary inst/WORDLIST | 16 inst/cheatsheet |only inst/doc/twbparser-intro.R | 28 inst/doc/twbparser-intro.Rmd | 342 +++-- inst/doc/twbparser-intro.html | 155 +- man/TwbParser.Rd | 213 +-- man/add_back_slash.Rd | 36 man/attr_safe_get.Rd | 44 man/basename_safe.Rd | 40 man/build_dependency_graph.Rd | 60 man/dot-twbx_classify.Rd | 36 man/extract_calculated_fields.Rd | 82 - man/extract_columns_with_table_source.Rd | 78 - man/extract_datasource_details.Rd | 98 - man/extract_joins.Rd | 70 - man/extract_named_connections.Rd | 80 - man/extract_parameters.Rd | 80 - man/extract_raw_fields.Rd | 74 - man/extract_relations.Rd | 68 - man/extract_relationships.Rd | 70 - man/extract_twb_from_twbx.Rd | 68 - man/infer_implicit_relationships.Rd | 82 - man/is_xml_missing.Rd | 36 man/log_twbx_contents.Rd | 36 man/plot_dependency_graph.Rd | 68 - man/plot_relationship_graph.Rd | 42 man/plot_source_join_graph.Rd | 52 man/prettify_calculated_fields.Rd | 42 man/print_datasource_summary.Rd | 36 man/put_in_sq_bracket.Rd | 36 man/redact.Rd | 36 man/safe_call.Rd | 40 man/tableau_formula_pretty.Rd | 46 man/tbs_custom_sql_graphql.Rd | 68 - man/tbs_publish_info.Rd | 68 - man/twb_calc_complexity.Rd |only man/twb_charts.Rd | 34 man/twb_colors.Rd | 34 man/twb_custom_sql.Rd | 49 man/twb_dashboard_actions.Rd |only man/twb_dashboard_filters.Rd | 38 man/twb_dashboard_layout.Rd |only man/twb_dashboard_sheets.Rd |only man/twb_dashboard_summary.Rd | 34 man/twb_dashboards.Rd | 34 man/twb_field_usage.Rd |only man/twb_initial_sql.Rd | 46 man/twb_page_composition.Rd | 46 man/twb_pages.Rd | 34 man/twb_pages_summary.Rd | 38 man/twb_published_refs.Rd | 50 man/twb_replication_brief.Rd |only man/twb_sheet_axes.Rd |only man/twb_sheet_filters.Rd |only man/twb_sheet_shelves.Rd |only man/twb_sheet_sorts.Rd |only man/twbparser-package.Rd | 50 man/twbx_extract_files.Rd | 76 - man/twbx_list.Rd | 46 man/validate_relationships.Rd | 86 - tests/testthat.R | 24 tests/testthat/test-active-bindings.R | 80 - tests/testthat/test-analytics.R |only tests/testthat/test-calculated-fields.R | 38 tests/testthat/test-cleaners.R |only tests/testthat/test-dashboard-details.R |only tests/testthat/test-graph-bugs.R |only tests/testthat/test-insights.R | 36 tests/testthat/test-overview.R | 24 tests/testthat/test-sheet-details.R |only tests/testthat/test-utils-extract_named_connections.R | 32 vignettes/twbparser-intro.Rmd | 342 +++-- 97 files changed, 5561 insertions(+), 4945 deletions(-)
Title: Geolocalização De Endereços Brasileiros (Geocoding Brazilian
Addresses)
Description: Método simples e eficiente de geolocalizar dados no Brasil. O
pacote é baseado em conjuntos de dados espaciais abertos de endereços
brasileiros, utilizando como fonte principal o Cadastro Nacional de Endereços
para Fins Estatísticos (CNEFE). O CNEFE é publicado pelo Instituto Brasileiro
de Geografia e Estatística (IBGE), órgão oficial de estatísticas e geografia
do Brasil. (A simple and efficient method for geolocating data in Brazil. The
package is based on open spatial datasets of Brazilian addresses, primarily
using the Cadastro Nacional de Endereços para Fins Estatísticos (CNEFE),
published by the Instituto Brasileiro de Geografia e Estatística (IBGE),
Brazil's official statistics and geography agency.)
Author: Rafael H. M. Pereira [aut, cre] ,
Daniel Herszenhut [aut] ,
Gabriel Garcia de Almeida [aut] ,
Arthur Bazolli [ctb],
Pedro Milreu Cunha [ctb],
ITpS - Instituto Todos pela Saude [fnd],
Ipea - Instituto de Pesquisa Economica Aplicada [cph, fnd]
Maintainer: Rafael H. M. Pereira <rafa.pereira.br@gmail.com>
Diff between geocodebr versions 0.6.1 dated 2026-01-27 and 0.6.2 dated 2026-04-13
geocodebr-0.6.1/geocodebr/R/geocode_orig.R |only geocodebr-0.6.1/geocodebr/inst/extdata/munis_bbox.rds |only geocodebr-0.6.1/geocodebr/tests/tests_rafa/reverse_geocode_alternatives.R |only geocodebr-0.6.2/geocodebr/DESCRIPTION | 13 geocodebr-0.6.2/geocodebr/MD5 | 47 - geocodebr-0.6.2/geocodebr/NEWS.md | 14 geocodebr-0.6.2/geocodebr/R/cache.R | 7 geocodebr-0.6.2/geocodebr/R/create_geocodebr_db.R | 14 geocodebr-0.6.2/geocodebr/R/geocode.R | 4 geocodebr-0.6.2/geocodebr/R/geocode_reverso.R | 312 ++++---- geocodebr-0.6.2/geocodebr/R/geocodebr-package.R | 2 geocodebr-0.6.2/geocodebr/R/onLoad.R |only geocodebr-0.6.2/geocodebr/R/register_cnefe_tables.R | 8 geocodebr-0.6.2/geocodebr/R/utils.R | 26 geocodebr-0.6.2/geocodebr/inst/doc/geocode.html | 4 geocodebr-0.6.2/geocodebr/inst/doc/geocode_reverso.html | 25 geocodebr-0.6.2/geocodebr/inst/doc/geocodebr.html | 22 geocodebr-0.6.2/geocodebr/inst/extdata/munis_bbox_2022.parquet |only geocodebr-0.6.2/geocodebr/man/geocode_reverso.Rd | 4 geocodebr-0.6.2/geocodebr/tests/tests_rafa/benchmark_20k.R | 4 geocodebr-0.6.2/geocodebr/tests/tests_rafa/munis_bbox.R | 54 + geocodebr-0.6.2/geocodebr/tests/tests_rafa/reverse_geocode_tests.R | 376 ++++++---- geocodebr-0.6.2/geocodebr/tests/tests_rafa/states_bbox.R | 21 geocodebr-0.6.2/geocodebr/tests/testthat/_snaps/definir_campos.md | 16 geocodebr-0.6.2/geocodebr/tests/testthat/_snaps/message.md | 14 geocodebr-0.6.2/geocodebr/tests/testthat/test-geocode.R | 6 geocodebr-0.6.2/geocodebr/tests/testthat/test-geocode_reverso.R | 2 27 files changed, 648 insertions(+), 347 deletions(-)
Title: A Magical Framework for Collaborative & Reproducible Data
Analysis
Description: A comprehensive data analysis framework for NIH-funded research that streamlines workflows for both data cleaning and preparing NIH Data Archive ('NDA') submission templates. Provides unified access to multiple data sources ('REDCap', 'MongoDB', 'Qualtrics', 'SQL', 'ORACLE') through interfaces to their APIs, with specialized functions for data cleaning, filtering, merging, and parsing. Features automatic validation, field harmonization, and memory-aware processing to enhance reproducibility in multi-site collaborative research as described in Mittal et al. (2021) <doi:10.20900/jpbs.20210011>.
Author: Joshua G. Kenney [aut, cre],
Trevor F. Williams [aut],
Minerva K. Pappu [aut],
Michael J. Spilka [aut],
Danielle N. Pratt [ctb],
Victor J. Pokorny [ctb],
Santiago Castiello de Obeso [ctb],
Praveen Suthaharan [ctb],
Christian R. Horgan [ctb]
Maintainer: Joshua G. Kenney <joshua.kenney@yale.edu>
Diff between wizaRdry versions 0.6.6 dated 2026-03-09 and 0.6.7 dated 2026-04-13
DESCRIPTION | 6 +-- MD5 | 10 ++--- NAMESPACE | 1 R/ndaFieldRenaming.R | 40 ++++++++++++++++++-- R/ndaRequest.R | 40 ++++++++++++++++++++ R/ndaTransformations.R | 95 ++++++++++++++++++++++++++++++++++++++++++++++++- 6 files changed, 178 insertions(+), 14 deletions(-)
Title: Facilitate File Handling, Directory Comparison & Synchronization
Description: Compare directories flexibly (by date, content, or both) and synchronize files efficiently, with asymmetric and symmetric modes, helper tools, and visualization support for file management.
Author: R.Andres Castaneda [aut],
Rossana Tatulli [aut, cre],
Global Poverty and Inequality Data Team World Bank [cph]
Maintainer: Rossana Tatulli <rtatulli@worldbank.org>
Diff between syncdr versions 0.1.1 dated 2026-01-27 and 0.1.2 dated 2026-04-13
DESCRIPTION | 7 MD5 | 75 ++-- NEWS.md | 57 +++ R/action_functions.R | 122 ++++++- R/asymmetric_sync.R | 339 ++++++++++------------ R/auxiliary_functions.R | 9 R/compare_directories.R | 42 ++ R/display_functions.R | 22 - R/print.R | 5 R/symmetric_sync.R | 187 ++++-------- R/syncdr-package.R | 10 R/utils.R | 185 ++++++++++++ inst/WORDLIST |only inst/doc/additional-options.html | 32 +- inst/doc/asymmetric-synchronization.html | 87 ++++- inst/doc/auxiliary-functions.html | 4 inst/doc/symmetric-synchronization.html | 36 ++ inst/doc/syncdr.html | 203 +++++++------ inst/doc/visualizations.html | 16 - man/check_sync_status_staleness.Rd |only man/common_files_asym_sync_to_right.Rd | 8 man/compare_directories.Rd | 2 man/copy_files_to_left.Rd | 17 - man/copy_files_to_right.Rd | 17 - man/full_asym_sync_to_right.Rd | 22 - man/full_symmetric_sync.Rd | 18 - man/partial_symmetric_sync_common_files.Rd | 11 man/partial_update_missing_files_asym_to_right.Rd | 8 man/perform_backup.Rd |only man/syncdr-concurrent.Rd |only man/update_missing_files_asym_to_right.Rd | 21 - man/validate_backup_dir.Rd |only man/validate_path_arg.Rd |only man/validate_sync_status_arg.Rd |only tests/testthat/test-action_functions.R | 281 +++++++++++++++++- tests/testthat/test-asym_sync.R | 214 ++++++++++--- tests/testthat/test-auxiliary_functions.R | 88 +++++ tests/testthat/test-compare_directories.R | 319 ++++++++++++++++++++ tests/testthat/test-display_functions.R | 29 + tests/testthat/test-print-syncdr-status.R | 4 tests/testthat/test-symm_sync.R | 110 ++++++- tests/testthat/test-utils.R | 100 ++++++ 42 files changed, 2098 insertions(+), 609 deletions(-)
Title: UCA Rcmdr Plug-in
Description: Some extensions to Rcmdr (R Commander), randomness test,
variance test for one normal sample and predictions using active model,
made by R-UCA project and used in teaching statistics at University of Cadiz (UCA).
Author: Manuel Munoz-Marquez [aut, cre]
Maintainer: Manuel Munoz-Marquez <manuel.munoz@uca.es>
Diff between RcmdrPlugin.UCA versions 5.1-2 dated 2024-09-26 and 5.1-3 dated 2026-04-13
ChangeLog | 3 DESCRIPTION | 13 - MD5 | 22 +- R/RcmdrPlugin.UCA.R | 24 +- build/vignette.rds |binary inst/doc/additions.html | 307 +++++++++++++--------------- inst/doc/adiciones.html | 307 +++++++++++++--------------- inst/etc/menus.txt | 4 inst/po/RcmdrPlugin.UCA-es |only inst/po/en@quot |only inst/po/es/LC_MESSAGES/R-RcmdrPlugin.UCA.mo |binary po/R-RcmdrPlugin.UCA-es.po | 16 - po/R-RcmdrPlugin.UCA.pot | 6 13 files changed, 360 insertions(+), 342 deletions(-)
More information about RcmdrPlugin.UCA at CRAN
Permanent link
Title: Classification with Parallel Factor Analysis
Description: Classification using Richard A. Harshman's Parallel Factor Analysis-1 (Parafac) model or Parallel Factor Analysis-2 (Parafac2) model fit to a three-way or four-way data array. See Harshman and Lundy (1994): <doi:10.1016/0167-9473(94)90132-5>. Classification using principal component analysis (PCA) fit to a two-way data matrix is also supported. Uses component weights from one mode of a Parafac, Parafac2, or PCA model as features to tune parameters for one or more classification methods via a k-fold cross-validation procedure. Allows for constraints on different tensor modes. Allows for inclusion of additional features alongside features generated by the component model. Supports penalized logistic regression, support vector machine, random forest, feed-forward neural network, regularized discriminant analysis, and gradient boosting machine. Supports binary and multiclass classification. Predicts class labels or class probabilities, and calculates multiple classification performan [...truncated...]
Author: Matthew A. Asisgress [aut, cre]
Maintainer: Matthew A. Asisgress <mattgress@protonmail.ch>
Diff between cpfa versions 1.2-7 dated 2026-03-29 and 1.2-8 dated 2026-04-13
ChangeLog | 31 +++++++++-------- DESCRIPTION | 10 ++--- MD5 | 34 +++++++++--------- R/cpfa.R | 44 ++++++++++++++++++------ R/cpm.R | 9 ++-- R/distdraw.R | 2 - R/plotcpfa.R | 4 -- R/predict.tunecpfa.R | 87 +++++++++++++++++++++++++++++++++++++++++++++--- R/print.tunecpfa.R | 7 +++ R/simcpfa.R | 6 +-- R/tunecpfa.R | 33 ++++++++++++++---- inst/doc/cpfa.R | 25 ++++++------- inst/doc/cpfa.Rmd | 45 ++++++++++-------------- inst/doc/cpfa.pdf |binary man/cpfa.Rd | 20 +++++++---- man/predict.tunecpfa.Rd | 14 +++++-- man/tunecpfa.Rd | 36 ++++++++++++------- vignettes/cpfa.Rmd | 45 ++++++++++-------------- 18 files changed, 292 insertions(+), 160 deletions(-)
Title: Flexible Bayes Factor Testing of Scientific Expectations
Description: Implementation of default Bayes factors
for testing statistical hypotheses under various statistical models. The package is
intended for applied quantitative researchers in the
social and behavioral sciences, medical research,
and related fields. The Bayes factor tests can be
executed for statistical models such as
univariate and multivariate normal linear models,
correlation analysis, generalized linear models, special cases of
linear mixed models, survival models, relational
event models. Parameters that can be tested are
location parameters (e.g., group means, regression coefficients),
variances (e.g., group variances), and measures of
association (e.g,. polychoric/polyserial/biserial/tetrachoric/product
moments correlations), among others.
Relevant references on the methodology The statistical underpinnings are
described in
O'Hagan (1995) <DOI:10.1111/j.2517-6161.1995.tb02017.x>,
Mulder and Xin (2022) <DOI:10.1080/00273171.2021.1904809>,
Mulder and Gelissen (2019) <D [...truncated...]
Author: Joris Mulder [aut, cre],
Caspar van Lissa [aut, ctb],
Donald R. Williams [aut, ctb],
Xin Gu [aut, ctb],
Anton Olsson-Collentine [aut, ctb],
Florian Boeing-Messing [aut, ctb],
Jean-Paul Fox [aut, ctb],
Janosch Menke [ctb],
Robbie van Aert [ctb],
Barry [...truncated...]
Maintainer: Joris Mulder <j.mulder3@tilburguniversity.edu>
Diff between BFpack versions 1.5.3 dated 2026-01-10 and 1.6.0 dated 2026-04-13
DESCRIPTION | 13 ++---- MD5 | 24 +++++------ NEWS.md | 6 ++ R/BF.gaussian.R | 21 +++++++--- R/BF.hetcor.R | 15 ++++++- R/BF.lm.R | 33 +++++++++++---- R/BF.ttest.R | 14 +++++- R/BF.var.R | 16 ++++++- R/zzz.R | 20 ++++++--- build/vignette.rds |binary inst/doc/vignette_BFpack.Rmd | 38 ++++++++++++++++-- inst/doc/vignette_BFpack.html | 87 ++++++++++++++++++++++++++++-------------- vignettes/vignette_BFpack.Rmd | 38 ++++++++++++++++-- 13 files changed, 243 insertions(+), 82 deletions(-)
Title: Compute a Cyclist's Eddington Number
Description: Compute a cyclist's Eddington number, including efficiently
computing cumulative E over a vector. A cyclist's Eddington number
<https://en.wikipedia.org/wiki/Arthur_Eddington#Eddington_number_for_cycling>
is the maximum number satisfying the condition such that a cyclist has
ridden E miles or greater on E distinct days. The algorithm in this package
is an improvement over the conventional approach because both summary
statistics and cumulative statistics can be computed in linear time, since
it does not require initial sorting of the data. These functions may also be
used for computing h-indices for authors, a metric described by Hirsch (2005)
<doi:10.1073/pnas.0507655102>. Both are specific applications of computing
the side length of a Durfee square <https://en.wikipedia.org/wiki/Durfee_square>.
Some additional author-level metrics such as g-index and i10-index are also
included in the package.
Author: Paul Egeler [aut, cre],
Tashi Reigle [ctb]
Maintainer: Paul Egeler <paulegeler@gmail.com>
Diff between eddington versions 4.2.0 dated 2024-08-16 and 4.3.0 dated 2026-04-13
DESCRIPTION | 12 +++++++----- MD5 | 29 +++++++++++++++++++---------- NAMESPACE | 5 +++++ NEWS.md | 10 ++++++++++ R/RcppExports.R | 4 ++++ R/bibliometrics.R |only R/durfee.R |only R/rides.r | 19 ++++++++++++++++++- build/partial.rdb |binary build/vignette.rds |binary data/daily_totals.rda |only inst/doc/eddington.html | 8 ++++---- man/daily_totals.Rd |only man/durfee.Rd |only man/h_index.Rd |only man/index.Rd |only man/rides.Rd | 3 +++ src/RcppExports.cpp | 19 ++++++++++++++++--- src/bibliometrics.cpp |only tests/testthat/test-bibliometrics.R |only 20 files changed, 86 insertions(+), 23 deletions(-)
Title: Clinical Trial Simulator
Description: Simulate phase II and/or phase III clinical trials. It supports various types of endpoints and adaptive strategies. Tools for carrying out graphical testing procedure and combination test under group sequential design are also provided.
Author: Han Zhang [cre, aut]
Maintainer: Han Zhang <zhangh.ustc@gmail.com>
Diff between TrialSimulator versions 1.10.0 dated 2026-02-15 and 1.16.0 dated 2026-04-13
TrialSimulator-1.10.0/TrialSimulator/tests/testthat/test-trial.R |only TrialSimulator-1.16.0/TrialSimulator/DESCRIPTION | 11 TrialSimulator-1.16.0/TrialSimulator/LICENSE | 2 TrialSimulator-1.16.0/TrialSimulator/MD5 | 123 - TrialSimulator-1.16.0/TrialSimulator/NAMESPACE | 26 TrialSimulator-1.16.0/TrialSimulator/NEWS.md | 60 TrialSimulator-1.16.0/TrialSimulator/R/Arms.R | 2 TrialSimulator-1.16.0/TrialSimulator/R/CalendarTimeCondition.R | 3 TrialSimulator-1.16.0/TrialSimulator/R/Controllers.R | 5 TrialSimulator-1.16.0/TrialSimulator/R/CorrelatedPfsAndOs3.R | 1 TrialSimulator-1.16.0/TrialSimulator/R/Endpoint.R | 2 TrialSimulator-1.16.0/TrialSimulator/R/Endpoints.R | 16 TrialSimulator-1.16.0/TrialSimulator/R/EnrollmentCountCondition.R | 10 TrialSimulator-1.16.0/TrialSimulator/R/GraphicalTesting.R | 1 TrialSimulator-1.16.0/TrialSimulator/R/GroupSequentialTest.R | 1 TrialSimulator-1.16.0/TrialSimulator/R/Listeners.R | 8 TrialSimulator-1.16.0/TrialSimulator/R/Milestones.R | 2 TrialSimulator-1.16.0/TrialSimulator/R/PiecewiseConstantExponentialRNG.R | 1 TrialSimulator-1.16.0/TrialSimulator/R/Regimens.R |only TrialSimulator-1.16.0/TrialSimulator/R/Trial.R | 11 TrialSimulator-1.16.0/TrialSimulator/R/Trials.R | 797 +++++++--- TrialSimulator-1.16.0/TrialSimulator/R/computeCumulativeAlphaSpent.R | 2 TrialSimulator-1.16.0/TrialSimulator/R/expandRegimen.R |only TrialSimulator-1.16.0/TrialSimulator/R/fitLinear.R | 2 TrialSimulator-1.16.0/TrialSimulator/R/fitLogistic.R | 1 TrialSimulator-1.16.0/TrialSimulator/R/fitLogrank.R | 1 TrialSimulator-1.16.0/TrialSimulator/R/package-imports.R |only TrialSimulator-1.16.0/TrialSimulator/R/qPiecewiseExponential.R |only TrialSimulator-1.16.0/TrialSimulator/R/regimen.R |only TrialSimulator-1.16.0/TrialSimulator/R/solveMixtureExponentialDistribution.R | 1 TrialSimulator-1.16.0/TrialSimulator/R/solvePiecewiseConstantExponentialDistribution.R |only TrialSimulator-1.16.0/TrialSimulator/R/summarizeMilestoneTime.R | 1 TrialSimulator-1.16.0/TrialSimulator/R/summarizeTable.R | 6 TrialSimulator-1.16.0/TrialSimulator/README.md | 20 TrialSimulator-1.16.0/TrialSimulator/build/vignette.rds |binary TrialSimulator-1.16.0/TrialSimulator/inst/doc/adaptiveDesign.Rmd | 3 TrialSimulator-1.16.0/TrialSimulator/inst/doc/adaptiveDesign.html | 110 - 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More information about TrialSimulator at CRAN
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Title: Read, Write, and Modify TOML Files
Description: Simple toolkit for working with TOML text. Based on tomledit which
allows for modifying TOML while preserving order, comments,and whitespace.
Author: Jeroen Ooms [aut, cre]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>
Diff between toml versions 1.0.0 dated 2025-10-16 and 1.1.0 dated 2026-04-13
DESCRIPTION | 11 ++++++----- LICENSE | 2 +- MD5 | 9 +++++---- NEWS |only inst/js/tomlr.js | 4 ++-- inst/js/tomlr.wasm |binary 6 files changed, 14 insertions(+), 12 deletions(-)
Title: Projection Pursuit
Description: Projection pursuit (PP) with 17 methods and grand tour with 3 methods. Being that projection pursuit searches for low-dimensional linear projections in high-dimensional data structures, while grand tour is a technique used to explore multivariate statistical data through animation.
Author: Paulo Cesar Ossani [aut, cre] ,
Marcelo Angelo Cirillo [aut]
Maintainer: Paulo Cesar Ossani <ossanipc@hotmail.com>
Diff between Pursuit versions 1.0.9 dated 2025-04-18 and 1.1.0 dated 2026-04-13
DESCRIPTION | 14 ++++++++------ MD5 | 4 ++-- man/Pursuit-package.Rd | 4 ++-- 3 files changed, 12 insertions(+), 10 deletions(-)
Title: Download 'nflverse' Data
Description: A minimal package for downloading data from 'GitHub'
repositories of the 'nflverse' project.
Author: Tan Ho [aut, cre, cph] ,
Sebastian Carl [aut],
John Edwards [ctb],
Ben Baldwin [ctb],
Thomas Mock [ctb],
Lee Sharpe [ctb],
Pranav Rajaram [ctb]
Maintainer: Tan Ho <tan@tanho.ca>
Diff between nflreadr versions 1.5.0 dated 2025-09-02 and 1.5.1 dated 2026-04-13
DESCRIPTION | 12 +- MD5 | 158 +++++++++++++++++----------------- NEWS.md | 17 +++ R/from_url.R | 43 ++------- R/load_combine.R | 4 R/load_contracts.R | 4 R/load_depth_charts.R | 2 R/load_draft_picks.R | 4 R/load_espn_qbr.R | 4 R/load_ftn_charting.R | 4 R/load_injuries.R | 4 R/load_nextgen_stats.R | 4 R/load_officials.R | 4 R/load_participation.R | 4 R/load_pbp.R | 6 - R/load_pfr_advstats.R | 4 R/load_players.R | 4 R/load_rosters.R | 4 R/load_rosters_weekly.R | 4 R/load_snap_counts.R | 4 R/load_stats.R | 6 - R/load_teams.R | 20 +++- R/utils.R | 2 R/utils_cache_clear.R | 2 R/utils_date.R | 16 ++- R/utils_download_nflverse.R | 16 +-- R/zzz.R | 25 ----- README.md | 49 +++++----- build/vignette.rds |binary data/dictionary_combine.rda |binary data/dictionary_contracts.rda |binary data/dictionary_depth_charts.rda |binary data/dictionary_draft_picks.rda |binary data/dictionary_espn_qbr.rda |binary data/dictionary_ff_opportunity.rda |binary data/dictionary_ff_playerids.rda |binary data/dictionary_ff_rankings.rda |binary data/dictionary_ftn_charting.rda |binary data/dictionary_injuries.rda |binary data/dictionary_nextgen_stats.rda |binary data/dictionary_participation.rda |binary data/dictionary_pbp.rda |binary data/dictionary_pfr_passing.rda |binary data/dictionary_player_stats.rda |binary data/dictionary_players.rda |binary data/dictionary_roster_status.rda |binary data/dictionary_rosters.rda |binary data/dictionary_schedules.rda |binary data/dictionary_snap_counts.rda |binary data/dictionary_team_stats.rda |binary data/dictionary_trades.rda |binary data/player_name_mapping.rda |binary data/team_abbr_mapping.rda |binary data/team_abbr_mapping_norelocate.rda |binary inst/doc/dictionary_pbp.html | 2 man/latest_season.Rd | 13 ++ man/load_combine.Rd | 2 man/load_contracts.Rd | 2 man/load_depth_charts.Rd | 2 man/load_draft_picks.Rd | 2 man/load_espn_qbr.Rd | 2 man/load_from_url.Rd | 4 man/load_ftn_charting.Rd | 2 man/load_injuries.Rd | 2 man/load_nextgen_stats.Rd | 2 man/load_officials.Rd | 2 man/load_participation.Rd | 2 man/load_pbp.Rd | 4 man/load_pfr_advstats.Rd | 2 man/load_player_stats.Rd | 2 man/load_players.Rd | 2 man/load_rosters.Rd | 2 man/load_rosters_weekly.Rd | 2 man/load_snap_counts.Rd | 2 man/load_team_stats.Rd | 2 man/load_teams.Rd | 8 + man/nflverse_download.Rd | 2 man/qs_from_url.Rd | 8 + tests/testthat/test-from_url.R | 20 ---- tests/testthat/test-nflverse.R | 10 +- 80 files changed, 267 insertions(+), 268 deletions(-)
Title: Analise multivariada (brazilian portuguese)
Description: Analise multivariada, tendo funcoes que executam analise de correspondencia simples (CA) e multipla (MCA), analise de componentes principais (PCA), analise de correlacao canonica (CCA), analise fatorial (FA), escalonamento multidimensional (MDS), analise discriminante linear (LDA) e quadratica (QDA), analise de cluster hierarquico e nao hierarquico, regressao linear simples e multipla, analise de multiplos fatores (MFA) para dados quantitativos, qualitativos, de frequencia (MFACT) e dados mistos, biplot, scatter plot, projection pursuit (PP), grant tour e outras funcoes uteis para a analise multivariada.
Author: Paulo Cesar Ossani [aut, cre] ,
Marcelo Angelo Cirillo [aut]
Maintainer: Paulo Cesar Ossani <ossanipc@hotmail.com>
Diff between MVar.pt versions 2.2.7 dated 2025-04-18 and 2.2.8 dated 2026-04-13
DESCRIPTION | 14 ++++++++------ MD5 | 4 ++-- man/MVar.pt-package.Rd | 4 ++-- 3 files changed, 12 insertions(+), 10 deletions(-)
Title: Multivariate Analysis
Description: Multivariate analysis, having functions that perform simple correspondence analysis (CA) and multiple correspondence analysis (MCA), principal components analysis (PCA), canonical correlation analysis (CCA), factorial analysis (FA), multidimensional scaling (MDS), linear (LDA) and quadratic discriminant analysis (QDA), hierarchical and non-hierarchical cluster analysis, simple and multiple linear regression, multiple factor analysis (MFA) for quantitative, qualitative, frequency (MFACT) and mixed data, biplot, scatter plot, projection pursuit (PP), grant tour method and other useful functions for the multivariate analysis.
Author: Paulo Cesar Ossani [aut, cre] ,
Marcelo Angelo Cirillo [aut]
Maintainer: Paulo Cesar Ossani <ossanipc@hotmail.com>
Diff between MVar versions 2.2.7 dated 2025-04-18 and 2.2.8 dated 2026-04-13
DESCRIPTION | 14 ++++++++------ MD5 | 4 ++-- man/MVar-package.Rd | 4 ++-- 3 files changed, 12 insertions(+), 10 deletions(-)
Title: Bayesian Network Meta-Analysis of Individual and Aggregate Data
Description: Network meta-analysis and network meta-regression models for
aggregate data, individual patient data, and mixtures of both individual
and aggregate data using multilevel network meta-regression as described by
Phillippo et al. (2020) <doi:10.1111/rssa.12579>. Models are estimated in a
Bayesian framework using 'Stan'.
Author: David M. Phillippo [aut, cre] ,
Samuel J. Perren [ctb] ,
Niels Dunnewind [ctb]
Maintainer: David M. Phillippo <david.phillippo@bristol.ac.uk>
Diff between multinma versions 0.8.1 dated 2025-05-30 and 0.9.0 dated 2026-04-13
DESCRIPTION | 17 MD5 | 200 NAMESPACE | 2 NEWS.md | 32 R/data.R | 19 R/geom_km.R | 2 R/mspline.R | 45 R/multinma-package.R | 2 R/nma.R | 111 R/nma_data-class.R | 2 R/nma_data.R | 72 R/nma_dic-class.R | 2 R/nma_dic.R | 4 R/nma_prior-class.R | 1 R/predict.R | 390 R/priors.R | 1 R/ranks.R | 93 R/relative_effects.R | 54 R/stan_nma-class.R | 4 README.md | 20 build/partial.rdb |binary build/vignette.rds |binary data/certolizumab.rda |only inst/REFERENCES.bib | 56 inst/doc/example_bcg_vaccine.html | 2 inst/doc/example_blocker.html | 2 inst/doc/example_certolizumab.html |only inst/doc/example_certolizumab.html.asis |only inst/doc/example_diabetes.html | 2 inst/doc/example_dietary_fat.html | 2 inst/doc/example_hta_psoriasis.html | 2 inst/doc/example_ndmm.html | 77 inst/doc/example_parkinsons.html | 2 inst/doc/example_plaque_psoriasis.html | 4 inst/doc/example_smoking.html | 2 inst/doc/example_social_anxiety.html | 158 inst/doc/example_statins.html | 2 inst/doc/example_thrombolytics.html | 2 inst/doc/vignette_overview.Rmd | 1 inst/doc/vignette_overview.html | 18 inst/stan/binomial_1par.stan | 54 inst/stan/binomial_2par.stan | 44 inst/stan/include/data_common.stan | 5 inst/stan/include/transformed_data_common.stan | 26 inst/stan/include/transformed_parameters_common.stan | 250 inst/stan/normal.stan | 67 inst/stan/ordered_multinomial.stan | 24 inst/stan/poisson.stan | 41 inst/stan/survival_mspline.stan | 10 inst/stan/survival_param.stan | 10 man/certolizumab.Rd |only man/geom_km.Rd | 2 man/knots.stan_nma.Rd |only man/make_knots.Rd | 4 man/mspline.Rd | 2 man/multinma-package.Rd | 1 man/nma.Rd | 23 man/plot_integration_error.Rd | 2 man/plot_prior_posterior.Rd | 2 man/posterior_ranks.Rd | 312 man/predict.stan_nma.Rd | 6 src/stanExports_binomial_1par.cc | 34 src/stanExports_binomial_1par.h | 3065 +++--- src/stanExports_binomial_2par.cc | 34 src/stanExports_binomial_2par.h | 3167 +++--- src/stanExports_normal.cc | 34 src/stanExports_normal.h | 2975 +++--- src/stanExports_ordered_multinomial.cc | 34 src/stanExports_ordered_multinomial.h | 3507 +++---- src/stanExports_poisson.cc | 34 src/stanExports_poisson.h | 2897 +++--- src/stanExports_predict_delta_new.cc | 34 src/stanExports_survival_mspline.cc | 34 src/stanExports_survival_mspline.h | 4048 ++++---- src/stanExports_survival_param.cc | 34 src/stanExports_survival_param.h | 4525 +++++----- tests/testthat/_snaps/plot_nma_data/atrial-fibrillation-network-star.svg | 150 tests/testthat/_snaps/plot_nma_data/atrial-fibrillation-network.svg | 190 tests/testthat/_snaps/plot_nma_data/bcg-vaccine-network.svg | 26 tests/testthat/_snaps/plot_nma_data/blocker-network.svg | 26 tests/testthat/_snaps/plot_nma_data/diabetes-network.svg | 106 tests/testthat/_snaps/plot_nma_data/dietary-fat-network.svg | 26 tests/testthat/_snaps/plot_nma_data/duplicated-agd-arms-network.svg | 26 tests/testthat/_snaps/plot_nma_data/duplicated-agd-contrasts-network.svg | 26 tests/testthat/_snaps/plot_nma_data/duplicated-ipd-arms-network.svg | 26 tests/testthat/_snaps/plot_nma_data/hta-psoriasis-network.svg | 86 tests/testthat/_snaps/plot_nma_data/ndmm-network.svg | 66 tests/testthat/_snaps/plot_nma_data/parkinsons-arm-network.svg | 74 tests/testthat/_snaps/plot_nma_data/parkinsons-contrast-network.svg | 74 tests/testthat/_snaps/plot_nma_data/parkinsons-mixed-network.svg | 74 tests/testthat/_snaps/plot_nma_data/plaque-psoriasis-network.svg | 130 tests/testthat/_snaps/plot_nma_data/smoking-network.svg | 58 tests/testthat/_snaps/plot_nma_data/statins-network.svg | 26 tests/testthat/_snaps/plot_nma_data/thrombolytics-dias-network.svg | 110 tests/testthat/_snaps/plot_nma_data/thrombolytics-network.svg | 110 tests/testthat/_snaps/plot_nma_data/transfusion-network.svg | 26 tests/testthat/test-data_set.R | 4 tests/testthat/test-example_certolizumab.R |only tests/testthat/test-example_dietary_fat.R | 47 tests/testthat/test-example_social_anxiety.R | 59 tests/testthat/test-knots.R |only tests/testthat/test-plot_nma_data.R | 46 tests/testthat/test-predict.R | 778 + vignettes/example_certolizumab.html.asis |only vignettes/vignette_overview.Rmd | 1 105 files changed, 15330 insertions(+), 13787 deletions(-)
Title: Multiple Factor Analysis (MFA)
Description: Performs Multiple Factor Analysis method for quantitative, categorical, frequency and mixed data, in addition to generating a lot of graphics, also has other useful functions.
Author: Paulo Cesar Ossani [aut, cre] ,
Marcelo Angelo Cirillo [aut]
Maintainer: Paulo Cesar Ossani <ossanipc@hotmail.com>
Diff between MFAg versions 2.2 dated 2025-04-18 and 2.3 dated 2026-04-13
DESCRIPTION | 14 ++++++++------ MD5 | 4 ++-- man/MFAg-package.Rd | 4 ++-- 3 files changed, 12 insertions(+), 10 deletions(-)
Title: Machine Learning
Description: Machine learning, containing several algorithms for supervised and unsupervised classification, in addition to a function that plots the Receiver Operating Characteristic (ROC) and Precision-Recall (PRC) curve graphs, and also a function that returns several metrics used for model evaluation, the latter can be used in ranking results from other packs.
Author: Paulo Cesar Ossani [aut, cre]
Maintainer: Paulo Cesar Ossani <ossanipc@hotmail.com>
Diff between Kira versions 1.0.7 dated 2025-04-18 and 1.0.8 dated 2026-04-13
DESCRIPTION | 11 ++++++----- MD5 | 4 ++-- man/Kira-package.Rd | 4 ++-- 3 files changed, 10 insertions(+), 9 deletions(-)
Title: DBI Package for the DuckDB Database Management System
Description: The DuckDB project is an embedded analytical data management
system with support for the Structured Query Language (SQL). This
package includes all of DuckDB and an R Database Interface (DBI)
connector.
Author: Hannes Muehleisen [aut] ,
Mark Raasveldt [aut] ,
Kirill Mueller [cre] ,
Stichting DuckDB Foundation [cph],
Apache Software Foundation [cph],
PostgreSQL Global Development Group [cph],
The Regents of the University of California [cph],
Cameron Desrocher [...truncated...]
Maintainer: Kirill Mueller <kirill@cynkra.com>
Diff between duckdb versions 1.5.1 dated 2026-03-26 and 1.5.2 dated 2026-04-13
DESCRIPTION | 6 MD5 | 44 +-- NEWS.md | 27 + R/Viewer.R | 2 R/backend-dbplyr__duckdb_connection.R | 20 - R/dbSendQuery__duckdb_connection_character.R | 2 R/version.R | 2 inst/include/cpp11/function.hpp | 4 src/duckdb.tar.xz |binary src/include/convert.hpp | 3 src/include/rapi.hpp | 2 src/reltoaltrep.cpp | 14 src/utils.cpp | 6 tests/testthat/_snaps/backend-dbplyr__duckdb_connection.md | 22 - tests/testthat/_snaps/sql.md | 3 tests/testthat/_snaps/types.md | 2 tests/testthat/helper-skip.R | 4 tests/testthat/setup.R | 2 tests/testthat/test-arrow.R | 186 ++++++------- tests/testthat/test-arrow_stream.R | 31 +- tests/testthat/test-backend-dbplyr__duckdb_connection.R | 24 - tests/testthat/test-register_arrow.R | 2 tests/testthat/test-types.R | 1 23 files changed, 223 insertions(+), 186 deletions(-)
Title: Utilities for Interacting with the 'Posit Connect' Server API
Description: Provides a helpful 'R6' class and methods for interacting with
the 'Posit Connect' Server API along with some meaningful utility functions
for regular tasks. API documentation varies by 'Posit Connect' installation
and version, but the latest documentation is also hosted publicly at
<https://docs.posit.co/connect/api/>.
Author: Kara Woo [aut, cre],
Toph Allen [aut],
Neal Richardson [aut],
Sean Lopp [aut],
Cole Arendt [aut],
Posit, PBC [cph, fnd]
Maintainer: Kara Woo <kara.woo@posit.co>
Diff between connectapi versions 0.11.1 dated 2026-03-21 and 0.12.0 dated 2026-04-13
DESCRIPTION | 6 +-- MD5 | 20 ++++++------ NEWS.md | 16 ++++++++-- R/connect.R | 4 +- R/get.R | 20 +++++++++++- R/utils.R | 11 +++++-- inst/doc/customize-http.html | 4 +- inst/doc/getting-started.html | 4 +- man/get_oauth_content_credentials.Rd | 6 ++- tests/testthat/test-connect.R | 54 +++++++++++++++++++++++++++++++++-- tests/testthat/test-oauth.R | 24 ++++++++++++++- 11 files changed, 137 insertions(+), 32 deletions(-)
Title: Joint Analysis of Experiments with Mixtures and Random Effects
Description: Performs a joint analysis of experiments with mixtures and random effects, taking on a process variable represented by a covariable.
Author: Paulo Cesar Ossani [aut, cre] ,
Marcelo Angelo Cirillo [aut]
Maintainer: Paulo Cesar Ossani <ossanipc@hotmail.com>
Diff between Blendstat versions 1.0.5 dated 2024-06-21 and 1.0.6 dated 2026-04-13
DESCRIPTION | 16 +++++++++------- MD5 | 4 ++-- man/Blendstat-package.Rd | 4 ++-- 3 files changed, 13 insertions(+), 11 deletions(-)
Title: Authentication in Shiny with Auth0
Description: Uses Auth0 API (see <https://auth0.com> for more
information) to use a simple authentication system. It provides
tools to log in and out a shiny application using social networks or a list
of e-mails.
Author: Julio Trecenti [cre],
Daniel Falbel [aut],
Jose Jesus [ctb],
Dean Attali [ctb],
William Amorim [ctb],
C Lente [ctb]
Maintainer: Julio Trecenti <julio.trecenti@gmail.com>
Diff between auth0 versions 0.2.3 dated 2023-03-26 and 0.3.0 dated 2026-04-13
DESCRIPTION | 10 ++-- MD5 | 24 +++++----- NEWS.md | 7 +++ R/auth0.R | 5 +- R/shiny.R | 112 +++++++++++++++++++++++++++++-------------------- R/utils.R | 42 +++++++++++++++++- build/vignette.rds |binary inst/doc/tutorial.R | 2 inst/doc/tutorial.Rmd | 2 inst/doc/tutorial.html | 50 +++++++++++---------- man/shinyAppAuth0.Rd | 11 ++++ man/ui-server.Rd | 4 + vignettes/tutorial.Rmd | 2 13 files changed, 178 insertions(+), 93 deletions(-)
Title: AI Screening Tools in R for Systematic Reviewing
Description: Provides functions to conduct title and abstract screening in systematic reviews using large language models, such as the Generative Pre-trained Transformer (GPT) models from 'OpenAI' <https://developers.openai.com/>. These functions can enhance the quality of title and abstract screenings while reducing the total screening time significantly. In addition, the package includes tools for quality assessment of title and abstract screenings, as described in Vembye, Christensen, Mølgaard, and Schytt (2025) <DOI:10.1037/met0000769>.
Author: Mikkel H. Vembye [aut, cre] ,
Thomas Olsen [aut]
Maintainer: Mikkel H. Vembye <mikkel.vembye@gmail.com>
Diff between AIscreenR versions 0.3.0 dated 2026-04-13 and 0.3.1 dated 2026-04-13
DESCRIPTION | 6 +- MD5 | 14 ++--- NEWS.md | 60 +++++++++++------------ R/tabscreen_gpt.R | 12 ++-- build/partial.rdb |binary build/vignette.rds |binary inst/doc/Using-GPT-API-Models-For-Screening.html | 2 man/tabscreen_gpt.tools.Rd | 12 ++-- 8 files changed, 54 insertions(+), 52 deletions(-)
Title: Multi-Category Classification Accuracy
Description: It contains six common multi-category classification accuracy evaluation measures.
All of these measures could be found in Li and Ming (2019) <doi:10.1002/sim.8103>. Specifically,
Hypervolume Under Manifold (HUM), described in
Li and Fine (2008) <doi:10.1093/biostatistics/kxm050>.
Correct Classification Percentage (CCP), Integrated Discrimination Improvement (IDI), Net Reclassification Improvement (NRI), R-Squared Value (RSQ), described in
Li, Jiang and Fine (2013) <doi:10.1093/biostatistics/kxs047>.
Polytomous Discrimination Index (PDI), described in
Van Calster et al. (2012) <doi:10.1007/s10654-012-9733-3>.
Li et al. (2018) <doi:10.1177/0962280217692830>.
PDI with variance estimation using Dover et al. (2021) <doi:10.1002/sim.9187>.
We described all these above measures and our mcca package in
Li, Gao and D'Agostino (2019) <doi:10.1002/sim.8103>.
Author: Ming Gao [aut],
Jialiang Li [aut, cre],
Pan Liu [aut],
Ben Van Calster [aut]
Maintainer: Jialiang Li <stalj@nus.edu.sg>
Diff between mcca versions 0.8.1 dated 2026-02-17 and 0.8.2 dated 2026-04-13
mcca-0.8.1/mcca/man/pdi_var.Rd |only mcca-0.8.2/mcca/DESCRIPTION | 6 mcca-0.8.2/mcca/MD5 | 41 - mcca-0.8.2/mcca/R/pdi.R | 794 +++++++++++++++++++----------- mcca-0.8.2/mcca/R/pm.R | 277 ++++------ mcca-0.8.2/mcca/R/utils.R | 1 mcca-0.8.2/mcca/man/ccp.Rd | 206 +++---- mcca-0.8.2/mcca/man/estp.Rd | 160 +++--- mcca-0.8.2/mcca/man/ests.Rd | 190 +++---- mcca-0.8.2/mcca/man/hum.Rd | 176 +++--- mcca-0.8.2/mcca/man/idi.Rd | 126 ++-- mcca-0.8.2/mcca/man/mcca-package.Rd | 243 ++++----- mcca-0.8.2/mcca/man/nri.Rd | 128 ++-- mcca-0.8.2/mcca/man/pdi.Rd | 199 ++++--- mcca-0.8.2/mcca/man/plot.mcca.hum.Rd | 90 +-- mcca-0.8.2/mcca/man/pm.Rd | 90 +-- mcca-0.8.2/mcca/man/print.mcca.ccp.Rd | 80 +-- mcca-0.8.2/mcca/man/print.mcca.hum.Rd | 80 +-- mcca-0.8.2/mcca/man/print.mcca.pdi.Rd | 80 +-- mcca-0.8.2/mcca/man/print.mcca.pdi.var.Rd | 10 mcca-0.8.2/mcca/man/print.mcca.rsq.Rd | 80 +-- mcca-0.8.2/mcca/man/rsq.Rd | 198 +++---- 22 files changed, 1761 insertions(+), 1494 deletions(-)
Title: Statistical Methods for Survival Data with Dependent Censoring
Description: Several statistical methods for analyzing survival data under various forms of dependent
censoring are implemented in the package. In addition to accounting for dependent censoring, it
offers tools to adjust for unmeasured confounding factors. The implemented approaches allow
users to estimate the dependency between survival time and dependent censoring time, based
solely on observed survival data. For more details on the methods, refer to Deresa and Van
Keilegom (2021) <doi:10.1093/biomet/asaa095>, Czado and Van Keilegom (2023)
<doi:10.1093/biomet/asac067>, Crommen et al. (2024) <doi:10.1007/s11749-023-00903-9>,
Deresa and Van Keilegom (2024) <doi:10.1080/01621459.2022.2161387>, Willems et al. (2025)
<doi:10.48550/arXiv.2403.11860>, Ding and Van Keilegom (2025) and D'Haen et al. (2025)
<doi:10.1007/s10985-025-09647-0>.
Author: Ilias Willems [aut] ,
Gilles Crommen [aut] ,
Negera Wakgari Deresa [aut, cre] ,
Jie Ding [aut] ,
Claudia Czado [aut] ,
Myrthe D'Haen [aut] ,
Ingrid Van Keilegom [aut]
Maintainer: Negera Wakgari Deresa <negera.deresa@gmail.com>
Diff between depCensoring versions 0.1.8 dated 2025-11-06 and 0.1.10 dated 2026-04-13
depCensoring-0.1.10/depCensoring/DESCRIPTION | 11 depCensoring-0.1.10/depCensoring/MD5 | 59 depCensoring-0.1.10/depCensoring/NAMESPACE | 5 depCensoring-0.1.10/depCensoring/NEWS.md | 3 depCensoring-0.1.10/depCensoring/R/BoundingCovariateEffects.R | 879 ++++++++-- depCensoring-0.1.10/depCensoring/R/CopulaCoxPHmodel_BootstrapMethods.R | 1 depCensoring-0.1.10/depCensoring/R/FitCopulaBasedCoxPHmodels.R | 3 depCensoring-0.1.10/depCensoring/R/FullyParametricCopulas.R | 20 depCensoring-0.1.10/depCensoring/R/NonparametricTransformation.R | 40 depCensoring-0.1.10/depCensoring/R/QRdepcens.R | 4 depCensoring-0.1.10/depCensoring/R/SemiParametricCopulawithoutCovariates.R | 44 depCensoring-0.1.10/depCensoring/man/ParamCop.Rd | 2 depCensoring-0.1.10/depCensoring/man/pi.surv.Rd | 4 depCensoring-0.1.8/depCensoring/man/Bvprob.Rd |only depCensoring-0.1.8/depCensoring/man/Distance.Rd |only depCensoring-0.1.8/depCensoring/man/Kernel.Rd |only depCensoring-0.1.8/depCensoring/man/Likelihood.Parametric.Rd |only depCensoring-0.1.8/depCensoring/man/Likelihood.Profile.Kernel.Rd |only depCensoring-0.1.8/depCensoring/man/Likelihood.Profile.Solve.Rd |only depCensoring-0.1.8/depCensoring/man/Likelihood.Semiparametric.Rd |only depCensoring-0.1.8/depCensoring/man/LongNPT.Rd |only depCensoring-0.1.8/depCensoring/man/Parameters.Constraints.Rd |only depCensoring-0.1.8/depCensoring/man/ScoreEqn.Rd |only depCensoring-0.1.8/depCensoring/man/SearchIndicate.Rd |only depCensoring-0.1.8/depCensoring/man/SolveH.Rd |only depCensoring-0.1.8/depCensoring/man/SolveHt1.Rd |only depCensoring-0.1.8/depCensoring/man/SolveScore.Rd |only depCensoring-0.1.8/depCensoring/man/SurvDC.GoF.Rd |only depCensoring-0.1.8/depCensoring/man/SurvFunc.CG.Rd |only depCensoring-0.1.8/depCensoring/man/SurvFunc.KM.Rd |only depCensoring-0.1.8/depCensoring/man/SurvMLE.Likelihood.Rd |only depCensoring-0.1.8/depCensoring/man/SurvMLE.Rd |only depCensoring-0.1.8/depCensoring/man/boot.nonparTrans.Rd |only depCensoring-0.1.8/depCensoring/man/control.arguments.Rd |only depCensoring-0.1.8/depCensoring/man/copdist.Archimedean.Rd |only depCensoring-0.1.8/depCensoring/man/cophfunc.Rd |only depCensoring-0.1.8/depCensoring/man/coppar.to.ktau.Rd |only depCensoring-0.1.8/depCensoring/man/generator.Archimedean.Rd |only depCensoring-0.1.8/depCensoring/man/ktau.to.coppar.Rd |only depCensoring-0.1.8/depCensoring/man/loglike.clayton.unconstrained.Rd |only depCensoring-0.1.8/depCensoring/man/loglike.frank.unconstrained.Rd |only depCensoring-0.1.8/depCensoring/man/loglike.gaussian.unconstrained.Rd |only depCensoring-0.1.8/depCensoring/man/loglike.gumbel.unconstrained.Rd |only depCensoring-0.1.8/depCensoring/man/loglike.indep.unconstrained.Rd |only depCensoring-0.1.8/depCensoring/man/optimlikelihood.Rd |only depCensoring-0.1.8/depCensoring/man/parafam.d.Rd |only depCensoring-0.1.8/depCensoring/man/parafam.p.Rd |only depCensoring-0.1.8/depCensoring/man/parafam.trunc.Rd |only 48 files changed, 839 insertions(+), 236 deletions(-)
Title: Shared Utilities to Extend the 'teal' Modules
Description: Provides decorators, transformators, and utility functions
to extend the 'teal' framework for interactive data analysis
applications. Implements methods for data visualization enhancement,
statistical data transformations, and workflow integration tools.
Designed to support clinical and pharmaceutical research workflows
within the 'teal' ecosystem through modular and reusable components.
Author: Nadia Abraham [aut],
Chanchal Bhalla [aut],
Peyman Eshghi [aut, cre],
Pranith Gourisetty [aut],
Sohan Lal [aut],
Przemyslaw Posiadala [aut],
Alina Tselinina [aut],
Konrad Pagacz [aut],
PHUSE [cph]
Maintainer: Peyman Eshghi <peymaan.es@gmail.com>
Diff between uteals versions 0.0.2 dated 2026-02-17 and 0.0.3 dated 2026-04-13
DESCRIPTION | 10 MD5 | 36 +- NAMESPACE | 86 ++++- NEWS.md | 7 R/create_rel_risk_transformator.R | 12 R/forest_plot_decorator.R | 7 R/ggplot_decorator.R | 49 ++- R/merge_levels_transformator.R | 485 ++++++++++++------------------ R/or_filtering_transformator.R | 11 R/or_filtering_transformator_view_model.R | 2 R/patchwork_plot_decorator.R | 4 R/r_access_utilities.R | 11 R/title_footer_decorator.R | 7 R/watermark_decorator.R |only man/create_rel_risk_transformator.Rd | 7 man/extract_modules_to_yaml.Rd | 5 man/ggplot_decorator.Rd | 33 +- man/merge_levels_transformator.Rd | 18 - man/uteals-package.Rd | 4 man/watermark_decorator.Rd |only 20 files changed, 439 insertions(+), 355 deletions(-)
Title: Lagrangian Multiplier Smoothing Splines for Smooth Function
Estimation
Description: Implements Lagrangian multiplier smoothing splines for flexible
nonparametric regression and function estimation. Provides tools for fitting,
prediction, and inference using a constrained optimization approach to
enforce smoothness. Supports generalized linear models, Weibull accelerated
failure time (AFT) models, quadratic programming constraints, and
customizable working-correlation structures, with options for parallel
fitting. The core spline construction builds on Ezhov et al. (2018)
<doi:10.1515/jag-2017-0029>. Quadratic-programming and
SQP details follow Goldfarb & Idnani (1983) <doi:10.1007/BF02591962> and
Nocedal & Wright (2006) <doi:10.1007/978-0-387-40065-5>. For smoothing
spline and penalized spline background, see Wahba (1990)
<doi:10.1137/1.9781611970128> and Wood (2017)
<doi:10.1201/9781315370279>. For variance-component and correlation-parameter
estimation, see Searle et al. (2006) <ISBN:978-0470009598>. The default
multivaria [...truncated...]
Author: Matthew Davis [aut, cre]
Maintainer: Matthew Davis <matthewlouisdavis@gmail.com>
Diff between lgspline versions 1.0.1 dated 2026-03-15 and 1.0.2 dated 2026-04-13
lgspline-1.0.1/lgspline/man/compute_dW_dlambda_wrapper.Rd |only lgspline-1.0.2/lgspline/DESCRIPTION | 6 lgspline-1.0.2/lgspline/MD5 | 80 lgspline-1.0.2/lgspline/NAMESPACE | 1 lgspline-1.0.2/lgspline/NEWS.md | 6 lgspline-1.0.2/lgspline/R/HelperFunctions.R | 9289 +++++----- lgspline-1.0.2/lgspline/R/blockfit_solve.R | 7 lgspline-1.0.2/lgspline/R/get_B.R | 417 lgspline-1.0.2/lgspline/R/lgspline-details.R | 303 lgspline-1.0.2/lgspline/R/lgspline.R | 181 lgspline-1.0.2/lgspline/R/make_partitions.R | 856 lgspline-1.0.2/lgspline/R/methods.R | 10 lgspline-1.0.2/lgspline/R/tune_Lambda.R | 798 lgspline-1.0.2/lgspline/inst/WORDLIST | 325 lgspline-1.0.2/lgspline/man/Details.Rd | 292 lgspline-1.0.2/lgspline/man/compute_dG_dlambda.Rd | 13 lgspline-1.0.2/lgspline/man/dot-bf_case_gauss_gee.Rd | 8 lgspline-1.0.2/lgspline/man/dot-build_tuning_env.Rd | 10 lgspline-1.0.2/lgspline/man/dot-compute_dhat_diag.Rd |only lgspline-1.0.2/lgspline/man/dot-compute_gcvu.Rd | 26 lgspline-1.0.2/lgspline/man/dot-compute_gcvu_gradient.Rd | 25 lgspline-1.0.2/lgspline/man/dot-compute_hat_diag.Rd |only lgspline-1.0.2/lgspline/man/dot-compute_loocv.Rd |only lgspline-1.0.2/lgspline/man/dot-compute_loocv_gradient.Rd |only lgspline-1.0.2/lgspline/man/dot-compute_tuning_delta.Rd | 2 lgspline-1.0.2/lgspline/man/dot-compute_tuning_predictions.Rd | 4 lgspline-1.0.2/lgspline/man/dot-compute_tuning_residuals.Rd | 8 lgspline-1.0.2/lgspline/man/dot-damped_bfgs.Rd | 24 lgspline-1.0.2/lgspline/man/dot-fit_coefficients.Rd | 11 lgspline-1.0.2/lgspline/man/dot-fit_get_B.Rd | 8 lgspline-1.0.2/lgspline/man/dot-get_B_gee_glm_woodbury.Rd | 32 lgspline-1.0.2/lgspline/man/dot-get_B_gee_woodbury.Rd | 20 lgspline-1.0.2/lgspline/man/dot-lagrangian_project_woodbury.Rd | 42 lgspline-1.0.2/lgspline/man/dot-tune_grid_search.Rd | 8 lgspline-1.0.2/lgspline/man/dot-woodbury_decompose_V.Rd | 60 lgspline-1.0.2/lgspline/man/dot-woodbury_halfsqrt_components.Rd | 45 lgspline-1.0.2/lgspline/man/dot-woodbury_redecompose_weighted.Rd | 45 lgspline-1.0.2/lgspline/man/get_2ndDerivPenalty.Rd | 2 lgspline-1.0.2/lgspline/man/get_B.Rd | 14 lgspline-1.0.2/lgspline/man/lgspline.Rd | 108 lgspline-1.0.2/lgspline/man/lgspline.fit.Rd | 42 lgspline-1.0.2/lgspline/man/plot.lgspline.Rd | 7 lgspline-1.0.2/lgspline/man/tune_Lambda.Rd | 126 lgspline-1.0.2/lgspline/tests/testthat/test-tuning-criterion.R |only 44 files changed, 7166 insertions(+), 6095 deletions(-)
Title: Automated Mendelian Randomization Workflows and Visualizations
Description: Provides tools to summarize, analyze, and visualize results
from Mendelian randomization studies using summarized genetic
association data. The package includes functions for generating forest
plots and scatter plots at the single-nucleotide polymorphism
and Mendelian randomization method levels, and for fitting multiple
estimators in a unified workflow, including inverse-variance weighted
estimation, Mendelian randomization Egger regression,
the weighted median estimator, the robust adjusted
profile score, Mendelian randomization pleiotropy residual sum
and outlier, Mendelian randomization with the genotype
recoding invariance property, and a Bayesian horseshoe
method. Related methods are described by Burgess (2013)
<doi:10.1002/gepi.21758>, Bowden (2015) <doi:10.1093/ije/dyv080>,
Bowden (2016) <doi:10.1002/gepi.21965>, Zhao (2020)
<doi:10.1214/19-AOS1866>, Verbanck (2018)
<doi:10.1038/s41588-018-0099-7>, Dudbridge (2025)
<doi:10.1371/journal.pgen.1011 [...truncated...]
Author: Kelin Zhong [aut, cre],
Chia-Ling Kuo [aut]
Maintainer: Kelin Zhong <kelinzhonguconn@gmail.com>
Diff between autoMR versions 1.0.0 dated 2026-04-04 and 1.1.0 dated 2026-04-13
DESCRIPTION | 6 MD5 | 30 R/mr_forest.R | 718 ++++++++++----------- R/mr_forest_class.R | 2 R/mr_scatter_class.R | 4 R/mr_transform.R | 501 ++++++++++---- R/mr_workflows.R | 1474 ++++++++++++++++++++++---------------------- man/GWAS_forest.Rd | 2 man/MR_forest.Rd | 2 man/export_forest_plots.Rd | 2 man/export_scatter_plots.Rd | 2 man/format_mr_input.Rd | 107 ++- man/harmonize_mr_data.Rd | 52 + man/plot_mr_scatter.Rd | 2 man/run_mr_analysis.Rd | 6 man/showplot.Rd | 2 16 files changed, 1614 insertions(+), 1298 deletions(-)
Title: Exploratory Graph Analysis – a Framework for Estimating the
Number of Dimensions in Multivariate Data using Network
Psychometrics
Description: Implements the Exploratory Graph Analysis (EGA) framework for dimensionality
and psychometric assessment. EGA estimates the number of dimensions in
psychological data using network estimation methods and community detection
algorithms. A bootstrap method is provided to assess the stability of dimensions
and items. Fit is evaluated using the Entropy Fit family of indices. Unique
Variable Analysis evaluates the extent to which items are locally dependent (or
redundant). Network loadings provide similar information to factor loadings and
can be used to compute network scores. A bootstrap and permutation approach are
available to assess configural and metric invariance. Hierarchical structures
can be detected using Hierarchical EGA. Time series and intensive longitudinal
data can be analyzed using Dynamic EGA, supporting individual, group, and
population level assessments.
Author: Hudson Golino [aut, cre] ,
Alexander Christensen [aut] ,
Robert Moulder [ctb] ,
Luis E. Garrido [ctb] ,
Laura Jamison [ctb] ,
Dingjing Shi [ctb] ,
John Fox [cph, ctb] ,
Yves Rosseel [cph, ctb] ,
Alexander Robitzsch [cph, ctb] ,
David Blackman [ctb] , [...truncated...]
Maintainer: Hudson Golino <hfg9s@virginia.edu>
Diff between EGAnet versions 2.4.0 dated 2025-12-06 and 2.4.1 dated 2026-04-13
EGAnet-2.4.0/EGAnet/R/frobenius.R |only EGAnet-2.4.0/EGAnet/R/network.regularization.R |only EGAnet-2.4.0/EGAnet/man/frobenius.Rd |only EGAnet-2.4.0/EGAnet/man/network.regularization.Rd |only EGAnet-2.4.1/EGAnet/DESCRIPTION | 36 +- EGAnet-2.4.1/EGAnet/MD5 | 45 +- EGAnet-2.4.1/EGAnet/NAMESPACE | 4 EGAnet-2.4.1/EGAnet/NEWS | 12 EGAnet-2.4.1/EGAnet/R/EGM.optimizations.R | 14 EGAnet-2.4.1/EGAnet/R/bootEGA.R | 19 - EGAnet-2.4.1/EGAnet/R/dynEGA.R | 356 ++++++++++----------- EGAnet-2.4.1/EGAnet/R/dynamic.network.compare.R | 15 EGAnet-2.4.1/EGAnet/R/helpers.R | 22 - EGAnet-2.4.1/EGAnet/R/invariance.R | 13 EGAnet-2.4.1/EGAnet/R/itemStability.R | 6 EGAnet-2.4.1/EGAnet/R/known.graph.R | 6 EGAnet-2.4.1/EGAnet/R/network.compare.R | 6 EGAnet-2.4.1/EGAnet/R/network.confusion.R |only EGAnet-2.4.1/EGAnet/R/regularization.R | 151 +++++--- EGAnet-2.4.1/EGAnet/R/sF.R |only EGAnet-2.4.1/EGAnet/R/simEGM.R | 89 ++++- EGAnet-2.4.1/EGAnet/inst/CITATION | 5 EGAnet-2.4.1/EGAnet/inst/COPYRIGHTS |only EGAnet-2.4.1/EGAnet/man/dynamic.network.compare.Rd | 2 EGAnet-2.4.1/EGAnet/man/network.compare.Rd | 2 EGAnet-2.4.1/EGAnet/man/network.confusion.Rd |only EGAnet-2.4.1/EGAnet/man/sF.Rd |only EGAnet-2.4.1/EGAnet/man/simEGM.Rd | 2 28 files changed, 473 insertions(+), 332 deletions(-)
Title: Rendering Font into 'data.frame'
Description: Extract glyph information from font data, and translate the
outline curves to flattened paths or tessellated polygons. The converted
data is returned as a 'data.frame' in easy-to-plot format.
Author: Hiroaki Yutani [aut, cre] ,
The authors of the dependency Rust crates [ctb]
Maintainer: Hiroaki Yutani <yutani.ini@gmail.com>
Diff between string2path versions 0.2.2 dated 2025-03-25 and 0.3.0 dated 2026-04-13
DESCRIPTION | 15 LICENSE.note | 295 +++++++++-- MD5 | 54 +- NEWS.md | 12 R/000-wrappers.R | 28 - R/dump_fontdb.R | 3 R/main.R | 69 ++ configure | 42 + configure.win | 7 inst/AUTHORS | 170 +++++- man/dump_fontdb.Rd | 3 man/string2path.Rd | 8 src/Makevars.in | 8 src/Makevars.win.in | 1 src/init.c | 41 - src/rust/Cargo.lock | 432 ++++++++++++++--- src/rust/Cargo.toml | 12 src/rust/api.h | 6 src/rust/src/builder.rs | 204 ++------ src/rust/src/font.rs | 409 +++++++++++----- src/rust/src/into_fill_stroke.rs | 107 +--- src/rust/src/into_path.rs | 112 ++-- src/rust/src/lib.rs | 147 ++--- src/rust/src/result.rs | 18 src/rust/vendor.tar.xz |binary tests/testthat/_snaps/snapshot.md | 88 +-- tests/testthat/_snaps/snapshot/path-and-fill-match.svg | 220 ++++---- tools/configure.R | 2 28 files changed, 1613 insertions(+), 900 deletions(-)
Title: Automated Item Removal Strategies for Exploratory Factor
Analysis
Description: Automates the identification and comparative evaluation of
item-removal strategies in exploratory factor analysis, producing
transparent summaries (explained variance, loading ranges, reliability)
to support comfortable, reproducible decisions. The criteria are
based on best practices and established heuristics (e.g., Costello &
Osborne (2005) <doi:10.7275/jyj1-4868>, Howard (2016)
<doi:10.1080/10447318.2015.1087664>). Includes flexible thresholds for
factor loadings (min_loading) and cross-loading differences (loading_diff).
Author: Ahmet Caliskan [aut, cre],
Abdullah Faruk Kilic [aut]
Maintainer: Ahmet Caliskan <ahmetcaliskan1987@gmail.com>
Diff between ItemRest versions 0.2.3 dated 2025-10-09 and 0.2.4 dated 2026-04-13
DESCRIPTION | 9 - MD5 | 20 ++- NEWS.md | 8 - R/itemrest_core.R | 61 +++++++++--- inst/doc/ItemRest_Demonstration.R | 9 - inst/doc/ItemRest_Demonstration.Rmd | 9 - inst/doc/ItemRest_Demonstration.html | 177 ++++++++++++++--------------------- man/howard.Rd |only man/identify_problem_items.Rd |only man/itemrest.Rd | 8 + man/test_removals.Rd | 12 ++ vignettes/ItemRest_Demonstration.Rmd | 9 - 12 files changed, 174 insertions(+), 148 deletions(-)
Title: Tools for Causal Discovery on Observational Data
Description: Tools for causal structure learning from observational data, with emphasis on temporally
ordered variables. The package implements the Temporal Peter–Clark (TPC) algorithm
(Petersen, Osler & Ekstrøm, 2021; <doi:10.1093/aje/kwab087>), the Temporal Greedy
Equivalence Search (TGES) algorithm (Larsen, Ekstrøm & Petersen, 2025; <doi:10.48550/arXiv.2502.06232>)
and Temporal Fast Causal Inference (TFCI). It provides a unified framework for specifying background
knowledge, which can be incorporated into the implemented algorithms from the R packages 'bnlearn'
(Scutari, 2010; <doi:10.18637/jss.v035.i03>) and 'pcalg' (Kalish et al., 2012; <doi:10.18637/jss.v047.i11>),
as well as the Java library 'Tetrad' (Scheines et al., 1998; <doi:10.1207/s15327906mbr3301_3>).
The package further includes utilities for visualization, comparison, and evaluation of graph
structures, facilitating performance evaluation and methodological studies.
Author: Bjarke Hautop Kristensen [aut, cre],
Frederik Fabricius-Bjerre [aut],
Anne Helby Petersen [aut],
Claus Thorn Ekstroem [aut],
Tobias Ellegaard Larsen [ctb]
Maintainer: Bjarke Hautop Kristensen <bjarke.kristensen@sund.ku.dk>
Diff between causalDisco versions 1.0.1 dated 2026-02-24 and 1.1.0 dated 2026-04-13
causalDisco-1.0.1/causalDisco/inst/doc/causal-discovery.Rmd |only causalDisco-1.0.1/causalDisco/inst/doc/causalDisco.Rmd |only causalDisco-1.0.1/causalDisco/inst/doc/knowledge.Rmd |only causalDisco-1.0.1/causalDisco/inst/doc/new-algorithm.Rmd |only causalDisco-1.0.1/causalDisco/inst/doc/visualization.Rmd |only causalDisco-1.0.1/causalDisco/inst/roxygen-examples/is_after-example.R |only causalDisco-1.0.1/causalDisco/vignettes/causal-discovery.Rmd |only causalDisco-1.0.1/causalDisco/vignettes/causalDisco.Rmd |only causalDisco-1.0.1/causalDisco/vignettes/knowledge.Rmd |only causalDisco-1.0.1/causalDisco/vignettes/new-algorithm.Rmd |only causalDisco-1.0.1/causalDisco/vignettes/visualization.Rmd |only causalDisco-1.1.0/causalDisco/DESCRIPTION | 53 causalDisco-1.1.0/causalDisco/MD5 | 643 - causalDisco-1.1.0/causalDisco/NAMESPACE | 228 causalDisco-1.1.0/causalDisco/NEWS.md | 72 causalDisco-1.1.0/causalDisco/R/aaa-globals.R | 12 causalDisco-1.1.0/causalDisco/R/aaa-iamb-family.R | 74 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causalDisco-1.1.0/causalDisco/R/edges.R | 86 causalDisco-1.1.0/causalDisco/R/engine-registry.R | 18 causalDisco-1.1.0/causalDisco/R/extend-causaldisco-algs.R | 169 causalDisco-1.1.0/causalDisco/R/fci.R | 205 causalDisco-1.1.0/causalDisco/R/ges.R | 193 causalDisco-1.1.0/causalDisco/R/gfci.R | 162 causalDisco-1.1.0/causalDisco/R/grasp-fci.R | 171 causalDisco-1.1.0/causalDisco/R/grasp.R | 170 causalDisco-1.1.0/causalDisco/R/gs.R | 145 causalDisco-1.1.0/causalDisco/R/hc.R | 149 causalDisco-1.1.0/causalDisco/R/iamb-family.R | 378 causalDisco-1.1.0/causalDisco/R/install-tetrad.R | 733 - causalDisco-1.1.0/causalDisco/R/knowledge-conversions.R | 805 - causalDisco-1.1.0/causalDisco/R/knowledge-helpers.R | 754 - causalDisco-1.1.0/causalDisco/R/knowledge-manipulation.R | 574 causalDisco-1.1.0/causalDisco/R/knowledge-verbs.R | 1516 +- causalDisco-1.1.0/causalDisco/R/knowledge.R | 1536 +- causalDisco-1.1.0/causalDisco/R/make-tikz-helpers.R | 760 - causalDisco-1.1.0/causalDisco/R/make-tikz.R | 792 - 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causalDisco-1.1.0/causalDisco/inst/roxygen-examples/boss-fci-example.R | 110 causalDisco-1.1.0/causalDisco/inst/roxygen-examples/cast_obj-example.R | 44 causalDisco-1.1.0/causalDisco/inst/roxygen-examples/causalDisco-search-example.R | 140 causalDisco-1.1.0/causalDisco/inst/roxygen-examples/check_args-example.R | 198 causalDisco-1.1.0/causalDisco/inst/roxygen-examples/create_adj_matrix_from_list_from_adj-example.R | 26 causalDisco-1.1.0/causalDisco/inst/roxygen-examples/current_heap_gb-example.R | 10 causalDisco-1.1.0/causalDisco/inst/roxygen-examples/default_heap-example.R | 60 causalDisco-1.1.0/causalDisco/inst/roxygen-examples/deparse_knowledge-example.R | 42 causalDisco-1.1.0/causalDisco/inst/roxygen-examples/dir_test-example.R | 44 causalDisco-1.1.0/causalDisco/inst/roxygen-examples/disco-example.R | 50 causalDisco-1.1.0/causalDisco/inst/roxygen-examples/disco_method-example.R | 274 causalDisco-1.1.0/causalDisco/inst/roxygen-examples/dot-add_edges-example.R | 28 causalDisco-1.1.0/causalDisco/inst/roxygen-examples/dot-build_knowledge_from_order-example.R | 20 causalDisco-1.1.0/causalDisco/inst/roxygen-examples/dot-check_if_pkgs_are_installed-example.R | 50 causalDisco-1.1.0/causalDisco/inst/roxygen-examples/dot-edge_verb-example.R | 54 causalDisco-1.1.0/causalDisco/inst/roxygen-examples/dot-formula_vars-example.R | 22 causalDisco-1.1.0/causalDisco/inst/roxygen-examples/dot-new_knowledge-example.R | 16 causalDisco-1.1.0/causalDisco/inst/roxygen-examples/dot-pcalg_constraints_from_knowledge-example.R | 34 causalDisco-1.1.0/causalDisco/inst/roxygen-examples/dot-read_line-example.R | 12 causalDisco-1.1.0/causalDisco/inst/roxygen-examples/dot-tier_index-example.R | 26 causalDisco-1.1.0/causalDisco/inst/roxygen-examples/dot-validate_forbidden_required-example.R | 38 causalDisco-1.1.0/causalDisco/inst/roxygen-examples/dot-validate_tier_rule-example.R | 40 causalDisco-1.1.0/causalDisco/inst/roxygen-examples/dot-vars_from_spec-example.R | 30 causalDisco-1.1.0/causalDisco/inst/roxygen-examples/fci-example.R | 136 causalDisco-1.1.0/causalDisco/inst/roxygen-examples/find_adjacencies-example.R | 16 causalDisco-1.1.0/causalDisco/inst/roxygen-examples/forbid_tier_violations-example.R | 34 causalDisco-1.1.0/causalDisco/inst/roxygen-examples/ges-example.R | 112 causalDisco-1.1.0/causalDisco/inst/roxygen-examples/get_tiers-example.R | 16 causalDisco-1.1.0/causalDisco/inst/roxygen-examples/gfci-example.R | 116 causalDisco-1.1.0/causalDisco/inst/roxygen-examples/grasp-example.R | 124 causalDisco-1.1.0/causalDisco/inst/roxygen-examples/grasp_fci-example.R | 126 causalDisco-1.1.0/causalDisco/inst/roxygen-examples/gs-example.R | 64 causalDisco-1.1.0/causalDisco/inst/roxygen-examples/hc-example.R | 76 causalDisco-1.1.0/causalDisco/inst/roxygen-examples/iamb-family-example.R | 112 causalDisco-1.1.0/causalDisco/inst/roxygen-examples/init_java-example.R | 8 causalDisco-1.1.0/causalDisco/inst/roxygen-examples/is_knowledge-example.R | 6 causalDisco-1.1.0/causalDisco/inst/roxygen-examples/knowledge-example.R | 294 causalDisco-1.1.0/causalDisco/inst/roxygen-examples/knowledge_verbs-example.R | 88 causalDisco-1.1.0/causalDisco/inst/roxygen-examples/make-tikz-example.R | 156 causalDisco-1.1.0/causalDisco/inst/roxygen-examples/make_suff_stat-example.R | 14 causalDisco-1.1.0/causalDisco/inst/roxygen-examples/order_restrict_amat_cpdag-example.R | 60 causalDisco-1.1.0/causalDisco/inst/roxygen-examples/order_restrict_pag_skel-example.R | 118 causalDisco-1.1.0/causalDisco/inst/roxygen-examples/order_restrict_sepset-example.R | 118 causalDisco-1.1.0/causalDisco/inst/roxygen-examples/parse_heap_gb-example.R | 10 causalDisco-1.1.0/causalDisco/inst/roxygen-examples/pc-example.R | 180 causalDisco-1.1.0/causalDisco/inst/roxygen-examples/pcalg-search-example.R | 92 causalDisco-1.1.0/causalDisco/inst/roxygen-examples/pcalg_search-example.R | 54 causalDisco-1.1.0/causalDisco/inst/roxygen-examples/plus-knowledge-example.R | 98 causalDisco-1.1.0/causalDisco/inst/roxygen-examples/rdata_to_tetrad_data-example.R | 58 causalDisco-1.1.0/causalDisco/inst/roxygen-examples/remove_from_knowledge-example.R | 44 causalDisco-1.1.0/causalDisco/inst/roxygen-examples/reorder_tiers-example.R | 28 causalDisco-1.1.0/causalDisco/inst/roxygen-examples/reposition_tier-example.R | 28 causalDisco-1.1.0/causalDisco/inst/roxygen-examples/seq_tiers-example.R | 18 causalDisco-1.1.0/causalDisco/inst/roxygen-examples/sp-fci-example.R | 110 causalDisco-1.1.0/causalDisco/inst/roxygen-examples/tabu-example.R | 76 causalDisco-1.1.0/causalDisco/inst/roxygen-examples/tbdeu-example.R | 124 causalDisco-1.1.0/causalDisco/inst/roxygen-examples/tbic-example.R | 76 causalDisco-1.1.0/causalDisco/inst/roxygen-examples/tetrad-search-example.R | 74 causalDisco-1.1.0/causalDisco/inst/roxygen-examples/tetrad_graph-example.R | 28 causalDisco-1.1.0/causalDisco/inst/roxygen-examples/tfci-example.R | 44 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Title: Bayesian Longitudinal Regularized Quantile Mixed Model
Description: With high-dimensional omics features, repeated measure ANOVA leads to longitudinal gene-environment interaction studies that have intra-cluster correlations, outlying observations and structured sparsity arising from the ANOVA design. In this package, we have developed robust sparse Bayesian mixed effect models tailored for the above studies (Fan et al. (2025) <doi:10.1093/jrsssc/qlaf027>). An efficient Gibbs sampler has been developed to facilitate fast computation. The Markov chain Monte Carlo algorithms of the proposed and alternative methods are efficiently implemented in 'C++'. The development of this software package and the associated statistical methods have been partially supported by an Innovative Research Award from Johnson Cancer Research Center, Kansas State University.
Author: Kun Fan [aut, cre],
Shejuty Devnath [aut],
Cen Wu [aut]
Maintainer: Kun Fan <fzt0428@gmail.com>
Diff between mixedBayes versions 0.2.3 dated 2026-03-16 and 0.2.4 dated 2026-04-13
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Title: Topological Data Analysis: Mapper Algorithm
Description: The Mapper algorithm from Topological Data Analysis, the steps are as follows 1. Define a filter (lens) function on the data. 2. Perform clustering within each level set. 3. Generate a complex from the clustering results.
Author: ChiChien Wang [aut, cre, trl],
Paul Pearson [ctb],
Daniel Muellner [ctb],
Gurjeet Singh [ctb]
Maintainer: ChiChien Wang <kennywang2003@gmail.com>
Diff between MapperAlgo versions 1.0.9 dated 2026-02-02 and 1.1.0 dated 2026-04-13
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Title: EEMD Based LSTM Model for Time Series Forecasting
Description: Forecasting univariate time series with ensemble empirical mode decomposition (EEMD) with long short-term memory (LSTM). For method details see Jaiswal, R. et al. (2022). <doi:10.1007/s00521-021-06621-3>.
Author: Kapil Choudhary [aut],
Girish Kumar Jha [aut, ths, ctb],
Ronit Jaiswal [ctb, cre],
Rajeev Ranjan Kumar [ctb]
Maintainer: Ronit Jaiswal <ronitjaiswal2912@gmail.com>
This is a re-admission after prior archival of version 0.1.0 dated 2022-09-26
Diff between EEMDlstm versions 0.1.0 dated 2022-09-26 and 1.0.1 dated 2026-04-13
DESCRIPTION | 20 ++++++++++---------- MD5 | 6 +++--- man/eemdLSTM.Rd | 2 +- man/emdLSTM.Rd | 2 +- 4 files changed, 15 insertions(+), 15 deletions(-)
Title: Custom Gov Style Inputs for Shiny
Description: Collection of 'shiny' application styling that are based on
the GOV.UK Design System. See
<https://design-system.service.gov.uk/components/> for details.
Author: Ross Wyatt [aut],
Cam Race [aut, cre],
Sarah Wong [aut],
Richard Bielby [ctb],
Charlotte Foster [ctb],
Jeni Martin [ctb],
Andrew Baker [ctb]
Maintainer: Cam Race <camrace8@gmail.com>
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Title: Methods for Optimizing Scales of Effect
Description: A tool for optimizing scales of effect when modeling ecological processes in space. Specifically, the scale parameter of a distance-weighted kernel distribution is identified for all environmental layers included in the model. Includes functions to assist in model selection, model evaluation, efficient transformation of raster surfaces using fast Fourier transformation, and projecting models. For more details see Peterman (2026) <doi:10.1007/s10980-025-02267-x>.
Author: Bill Peterman [aut, cre]
Maintainer: Bill Peterman <Peterman.73@osu.edu>
Diff between multiScaleR versions 0.5.0 dated 2026-03-26 and 0.6.6 dated 2026-04-13
DESCRIPTION | 11 MD5 | 77 - NAMESPACE | 242 ++-- NEWS | 36 R/diagnostics.R |only R/kernel_dist.R | 27 R/kernel_prep.R | 46 R/kernel_scale.raster.R | 51 - R/kernel_scale_fn.R | 305 ++++-- R/marginal_effects.R | 226 +++- R/multiScale_optim.R | 169 ++- R/plot_method.R | 17 R/print_methods.R | 83 + R/profile_scale_ci.R |only R/profile_sigma.R |only R/scale_center_raster.R | 24 R/sim_dat.R | 31 R/sim_dat_unmarked.R | 41 R/validation_helpers.R |only build/vignette.rds |binary inst/doc/multiScaleR_Guide.R | 55 - inst/doc/multiScaleR_Guide.Rmd | 260 ++++- inst/doc/multiScaleR_Guide.html | 1482 ++++++++++++++++++------------ inst/doc/quickstart.R |only inst/doc/quickstart.Rmd |only inst/doc/quickstart.html |only inst/doc/spatial_projection_clamping.R | 10 inst/doc/spatial_projection_clamping.Rmd | 191 ++- inst/doc/spatial_projection_clamping.html | 1233 +++++++++++++++--------- man/diagnostics.Rd |only man/fft_convolution.Rd | 48 man/kernel_scale.raster.Rd | 206 ++-- man/kernel_scale_fn.Rd | 85 - man/multiScale_optim.Rd | 300 +++--- man/plot.sigma_profile.Rd |only man/profile_sigma.Rd |only man/summary.multiScaleR.Rd | 43 tests |only vignettes/multiScaleR_Guide.Rmd | 260 ++++- vignettes/quickstart.Rmd |only vignettes/spatial_projection_clamping.Rmd | 191 ++- 41 files changed, 3787 insertions(+), 1963 deletions(-)
Title: Sample Size and Power Calculation for Bayesian Testing with
Bayes Factor
Description: The goal of 'BayesPower' is to provide tools for Bayesian sample size determination and power analysis across a range of common hypothesis testing scenarios using Bayes factors. The main function, BayesPower_BayesFactor(), launches an interactive 'shiny' application for performing these analyses. The application also provides command-line code for reproducibility. Details of the methods are described in the tutorial by Wong, Pawel, and Tendeiro (2025) <doi:10.31234/osf.io/pgdac_v3>.
Author: Tsz Keung Wong [aut, cre],
Samuel Pawel [aut],
Jorge Tendeiro [aut]
Maintainer: Tsz Keung Wong <t.k.wong3004@gmail.com>
Diff between BayesPower versions 1.0.3 dated 2026-03-16 and 1.0.4 dated 2026-04-13
DESCRIPTION | 6 MD5 | 41 +-- NEWS.md |only R/BF_S3class.r | 22 - R/BF_app_backend.R | 2 R/BF_app_frontend.r | 2 R/BF_users_functions.r | 390 ++++++++++++++++++++--------------- inst/report_templates/report_bin.Rmd | 8 man/BF10.bin.test.Rd | 2 man/BF10.cor.Rd | 4 man/BF10.f.test.Rd | 4 man/BF10.props.Rd | 2 man/BF10.ttest.OneSample.Rd | 2 man/BFpower.bin.Rd | 57 +++-- man/BFpower.cor.Rd | 51 ++-- man/BFpower.f.test.Rd | 51 ++-- man/BFpower.props.Rd | 56 +++-- man/BFpower.ttest.OneSample.Rd | 69 +++--- man/BFpower.ttest.TwoSample.Rd | 62 +++-- man/plot.BFpower.Rd | 7 man/print.BFpower.Rd | 4 man/print.BFvalue.Rd | 4 22 files changed, 483 insertions(+), 363 deletions(-)
Title: Mappable Vector Library for Handling Large Datasets
Description: Mappable vector library provides convenient way to access large datasets. Use all of your data at once, with few limits. Memory mapped data can be shared between multiple R processes. Access speed depends on storage medium, so solid state drive is recommended, preferably with PCI Express (or M.2 nvme) interface or a fast network file system. The data is memory mapped into R and then accessed using usual R list and array subscription operators. Convenience functions are provided for merging, grouping and indexing large vectors and data.frames. The layout of underlying MVL files is optimized for large datasets. The vectors are stored to guarantee alignment for vector intrinsics after memory map. The package is built on top of libMVL, which can be used as a standalone C library. libMVL has simple C API making it easy to interchange datasets with outside programs. Large MVL datasets are distributed via Academic Torrents <https://academictorrents.com/collection/mvl-datasets>.
Author: Vladimir Dergachev [aut, cre]
Maintainer: Vladimir Dergachev <support@altumrete.com>
Diff between RMVL versions 1.1.0.2 dated 2025-09-23 and 1.1.0.3 dated 2026-04-13
RMVL-1.1.0.2/RMVL/man/print.MVL_INDEX.Rd |only RMVL-1.1.0.3/RMVL/DESCRIPTION | 8 ++++---- RMVL-1.1.0.3/RMVL/MD5 | 3 +-- 3 files changed, 5 insertions(+), 6 deletions(-)
Title: Ordered Homogeneity Pursuit Lasso for Group Variable Selection
Description: Ordered homogeneity pursuit lasso (OHPL)
algorithm for group variable selection proposed in Lin et al. (2017)
<DOI:10.1016/j.chemolab.2017.07.004>. The OHPL method exploits the
homogeneity structure in high-dimensional data and enjoys the
grouping effect to select groups of important variables
automatically. This feature makes it particularly useful for
high-dimensional datasets with strongly correlated variables,
such as spectroscopic data.
Author: You-Wu Lin [aut],
Nan Xiao [aut, cre]
Maintainer: Nan Xiao <me@nanx.me>
Diff between OHPL versions 1.4.1 dated 2024-07-20 and 1.4.2 dated 2026-04-13
DESCRIPTION | 10 +++++----- MD5 | 10 +++++----- NEWS.md | 6 ++++++ R/OHPL.sim.R | 2 -- build/partial.rdb |binary man/OHPL.sim.Rd | 3 --- 6 files changed, 16 insertions(+), 15 deletions(-)
Title: AI Screening Tools in R for Systematic Reviewing
Description: Provides functions to conduct title and abstract screening in systematic reviews using large language models, such as the Generative Pre-trained Transformer (GPT) models from 'OpenAI' <https://developers.openai.com/>. These functions can enhance the quality of title and abstract screenings while reducing the total screening time significantly. In addition, the package includes tools for quality assessment of title and abstract screenings, as described in Vembye, Christensen, Mølgaard, and Schytt (2025) <DOI:10.1037/met0000769>.
Author: Mikkel H. Vembye [aut, cre] ,
Thomas Olsen [aut]
Maintainer: Mikkel H. Vembye <mikkel.vembye@gmail.com>
Diff between AIscreenR versions 0.2.0 dated 2025-08-18 and 0.3.0 dated 2026-04-13
AIscreenR-0.2.0/AIscreenR/inst/doc/Using-GPT-API-Models-For-Screening.Rmd |only AIscreenR-0.2.0/AIscreenR/vignettes/Using-GPT-API-Models-For-Screening.Rmd |only AIscreenR-0.2.0/AIscreenR/vignettes/helper-stuff |only AIscreenR-0.3.0/AIscreenR/DESCRIPTION | 23 AIscreenR-0.3.0/AIscreenR/MD5 | 137 AIscreenR-0.3.0/AIscreenR/NAMESPACE | 14 AIscreenR-0.3.0/AIscreenR/NEWS.md | 45 AIscreenR-0.3.0/AIscreenR/R/api_key_functions.R | 241 AIscreenR-0.3.0/AIscreenR/R/approximate_price.R | 325 - AIscreenR-0.3.0/AIscreenR/R/data.R | 134 AIscreenR-0.3.0/AIscreenR/R/fine_tune_data.R | 392 - AIscreenR-0.3.0/AIscreenR/R/function-calling.R | 203 AIscreenR-0.3.0/AIscreenR/R/groq_engine.r |only AIscreenR-0.3.0/AIscreenR/R/misc.func.hidden.price.R | 109 AIscreenR-0.3.0/AIscreenR/R/misc.func.hidden.tabscreen.R | 20 AIscreenR-0.3.0/AIscreenR/R/misc.helpers.R | 383 - AIscreenR-0.3.0/AIscreenR/R/misc.hidden.func.analyzer.R | 154 AIscreenR-0.3.0/AIscreenR/R/misc.inherits.R | 1 AIscreenR-0.3.0/AIscreenR/R/ollama_engine.r |only AIscreenR-0.3.0/AIscreenR/R/print.groq.r |only AIscreenR-0.3.0/AIscreenR/R/rate_limits.R | 276 AIscreenR-0.3.0/AIscreenR/R/report_errors.r |only AIscreenR-0.3.0/AIscreenR/R/sample_references.R | 9 AIscreenR-0.3.0/AIscreenR/R/save_functions.r |only AIscreenR-0.3.0/AIscreenR/R/screen_analyzer.R | 352 - AIscreenR-0.3.0/AIscreenR/R/screen_errors.R | 255 AIscreenR-0.3.0/AIscreenR/R/screen_errors.gpt.R | 661 +- AIscreenR-0.3.0/AIscreenR/R/screen_errors.orginal.R | 860 +- AIscreenR-0.3.0/AIscreenR/R/tabscreen_gpt.R | 1504 ++-- AIscreenR-0.3.0/AIscreenR/R/tabscreen_gpt.original.R | 2214 +++---- AIscreenR-0.3.0/AIscreenR/R/tabscreen_groq.r |only AIscreenR-0.3.0/AIscreenR/R/tabscreen_ollama.r |only AIscreenR-0.3.0/AIscreenR/R/zzz.R | 15 AIscreenR-0.3.0/AIscreenR/build/vignette.rds |binary AIscreenR-0.3.0/AIscreenR/data/disagreements.rda |only AIscreenR-0.3.0/AIscreenR/data/groq_model_prizes.rda |only AIscreenR-0.3.0/AIscreenR/data/model_prizes.rda |binary AIscreenR-0.3.0/AIscreenR/inst/doc/Using-GPT-API-Models-For-Screening.R | 101 AIscreenR-0.3.0/AIscreenR/inst/doc/Using-GPT-API-Models-For-Screening.html | 1511 +--- AIscreenR-0.3.0/AIscreenR/inst/doc/Using-GPT-API-Models-For-Screening.qmd |only AIscreenR-0.3.0/AIscreenR/inst/extdata/comparison-results |only AIscreenR-0.3.0/AIscreenR/inst/extdata/dis_sub.rda |only AIscreenR-0.3.0/AIscreenR/inst/extdata/friends_dat.rds |only AIscreenR-0.3.0/AIscreenR/inst/figures |only AIscreenR-0.3.0/AIscreenR/man/AIscreenR-package.Rd | 4 AIscreenR-0.3.0/AIscreenR/man/approximate_price_gpt.Rd | 14 AIscreenR-0.3.0/AIscreenR/man/create_fine_tune_data.Rd | 112 AIscreenR-0.3.0/AIscreenR/man/disagreements.Rd |only AIscreenR-0.3.0/AIscreenR/man/get_api_key.Rd | 9 AIscreenR-0.3.0/AIscreenR/man/get_api_key_groq.Rd |only AIscreenR-0.3.0/AIscreenR/man/groq_model_prizes.Rd |only AIscreenR-0.3.0/AIscreenR/man/model_prizes.Rd | 8 AIscreenR-0.3.0/AIscreenR/man/print.groq.Rd |only AIscreenR-0.3.0/AIscreenR/man/rate_limits_per_minute.Rd | 36 AIscreenR-0.3.0/AIscreenR/man/read_ris_to_dataframe.Rd |only AIscreenR-0.3.0/AIscreenR/man/report.Rd |only AIscreenR-0.3.0/AIscreenR/man/sample_references.Rd | 9 AIscreenR-0.3.0/AIscreenR/man/save_dataframe_to_ris.Rd |only AIscreenR-0.3.0/AIscreenR/man/save_fine_tune_data.Rd | 152 AIscreenR-0.3.0/AIscreenR/man/screen_errors.Rd | 99 AIscreenR-0.3.0/AIscreenR/man/screen_errors.chatgpt.Rd | 8 AIscreenR-0.3.0/AIscreenR/man/screen_errors.gpt.Rd | 8 AIscreenR-0.3.0/AIscreenR/man/set_api_key.Rd | 10 AIscreenR-0.3.0/AIscreenR/man/tabscreen_gpt.original.Rd | 20 AIscreenR-0.3.0/AIscreenR/man/tabscreen_gpt.tools.Rd | 74 AIscreenR-0.3.0/AIscreenR/man/tabscreen_groq.Rd |only AIscreenR-0.3.0/AIscreenR/man/tabscreen_ollama.Rd |only AIscreenR-0.3.0/AIscreenR/tests/testthat/test-api_key_functions.R | 8 AIscreenR-0.3.0/AIscreenR/tests/testthat/test-approximate_price_gpt.R | 188 AIscreenR-0.3.0/AIscreenR/tests/testthat/test-rate_limits.R | 96 AIscreenR-0.3.0/AIscreenR/tests/testthat/test-report_errors.r |only AIscreenR-0.3.0/AIscreenR/tests/testthat/test-save_functions.r |only AIscreenR-0.3.0/AIscreenR/tests/testthat/test-screen_analyzer.R | 4 AIscreenR-0.3.0/AIscreenR/tests/testthat/test-screen_errors.R | 2 AIscreenR-0.3.0/AIscreenR/tests/testthat/test-tabscreen_gpt.R | 2189 +++---- AIscreenR-0.3.0/AIscreenR/tests/testthat/test-tabscreen_groq.R |only AIscreenR-0.3.0/AIscreenR/tests/testthat/test-tabscreen_ollama.r |only AIscreenR-0.3.0/AIscreenR/vignettes/AIscreenR.bib | 362 - AIscreenR-0.3.0/AIscreenR/vignettes/Using-GPT-API-Models-For-Screening.qmd |only AIscreenR-0.3.0/AIscreenR/vignettes/apa.csl | 3052 +++++----- AIscreenR-0.3.0/AIscreenR/vignettes/helper_stuff |only 81 files changed, 8447 insertions(+), 7956 deletions(-)
Title: Create Custom Plots for Viewing Genetic Association Results
Description: A collection of functions for visualizing,exploring and annotating genetic association results.Association results from multiple traits can be viewed simultaneously along with gene annotation, over the entire genome (Manhattan plot) or in the more detailed regional view.
Author: Thorhildur Juliusdottir [cph, aut, cre],
Andri Stefansson [aut],
Kyle Scott [ctb]
Maintainer: Thorhildur Juliusdottir <totajuliusd@gmail.com>
Diff between topr versions 2.0.3 dated 2026-04-12 and 2.0.4 dated 2026-04-13
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NEWS.md | 3 +++ R/foresttopr.R | 2 +- R/topr.R | 1 - 5 files changed, 12 insertions(+), 10 deletions(-)
Title: SNPs-Based Whole Genome Association Studies
Description: Functions to perform most of the common analysis in genome
association studies are implemented. These analyses include descriptive
statistics and exploratory analysis of missing values, calculation of
Hardy-Weinberg equilibrium, analysis of association based on generalized
linear models (either for quantitative or binary traits), and analysis
of multiple SNPs (haplotype and epistasis analysis). Permutation test
and related tests (sum statistic and truncated product) are also
implemented. Max-statistic and genetic risk-allele score exact
distributions are also possible to be estimated. The methods are
described in Gonzalez JR et al., 2007 <doi: 10.1093/bioinformatics/btm025>.
This version includes internal copies of functions from the archived 'haplo.stats'
package to maintain functionality.
Author: Victor Moreno [aut],
Juan R Gonzalez [aut] ,
Dolors Pelegri [aut, cre]
Maintainer: Dolors Pelegri <dolors.pelegri@isglobal.org>
This is a re-admission after prior archival of version 2.1-2 dated 2024-10-28
Diff between SNPassoc versions 2.1-2 dated 2024-10-28 and 2.3.1 dated 2026-04-13
DESCRIPTION | 21 - MD5 | 79 +++ NAMESPACE | 99 +++- R/Ginv.R |only R/dglm.fit.q |only R/geno.count.pairs.q |only R/haplo.binomial.R |only R/haplo.em.control.q |only R/haplo.em.fitter.q |only R/haplo.em.q |only R/haplo.glm.control.q |only R/haplo.glm.q |only R/haplo.inter.fit.R | 16 R/haplo.model.frame.q |only R/haplo.score.glm.q |only R/haplo.score.podds.q |only R/haplo.score.q |only R/haplo.score.slide.q |only R/locus.q |only R/louis.info.q |only R/make.geno.R | 2 R/mf.gindx.q |only R/na.geno.keep.q |only R/plot.haplo.score.q.R |only R/plot.haplo.score.slide.q.R |only R/print.haplo.em.q |only R/printBanner.q |only R/residScaledGlmFit.q |only R/score.sim.control.q |only R/setupGeno.q |only R/varfunc.glm.fit.q |only R/x.sexcheck.q |only build/vignette.rds |binary data/hla.demo.tab |only data/hla.demo.tab.gz |only inst/doc/SNPassoc.R | 38 - inst/doc/SNPassoc.Rmd | 860 +++++++++++++++++++++---------------------- inst/doc/SNPassoc.html | 169 ++++---- man/Ginv.Rd |only man/getGeneSymbol.Rd | 77 +-- man/haplo.em.Rd |only man/haplo.em.control.Rd |only man/haplo.glm.Rd |only man/haplo.glm.control.Rd |only man/haplo.model.frame.Rd |only man/haplo.score.Rd |only man/haplo.score.slide.Rd |only man/haplointeraction.Rd | 1 man/hla.demo.Rd |only man/int.Rd | 1 man/interactionPval.Rd | 168 ++++---- man/intervals.Rd | 13 man/louis.info.Rd |only man/na.geno.keep.Rd |only man/plot.haplo.score.Rd |only man/printBanner.Rd |only man/score.sim.control.Rd |only man/setupGeno.Rd |only src |only vignettes/SNPassoc.Rmd | 860 +++++++++++++++++++++---------------------- vignettes/scripts.R |only 61 files changed, 1241 insertions(+), 1163 deletions(-)
Title: R Interface to W3C Markup Validation Services
Description: R interface to a W3C Markup Validation service.
See <https://validator.w3.org/> for more information.
Author: Kurt Hornik [aut, cre]
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>
Diff between W3CMarkupValidator versions 0.2-2 dated 2025-12-10 and 0.2-3 dated 2026-04-13
DESCRIPTION | 6 +-- MD5 | 8 ++--- R/w3c.R | 64 ++++++++++++++++++++++++++++++++---------- man/w3c_markup_validate.Rd | 8 ++++- man/w3c_markup_validate_db.Rd | 5 +-- 5 files changed, 66 insertions(+), 25 deletions(-)
More information about W3CMarkupValidator at CRAN
Permanent link
Title: Clustering via Quadratic Scoring
Description: Performs tuning of clustering models, methods and algorithms including the problem of determining an appropriate number of clusters. Validation of cluster analysis results is performed via quadratic scoring using resampling methods, as in Coraggio, L. and Coretto, P. (2023) <doi:10.1016/j.jmva.2023.105181>.
Author: Luca Coraggio [cre, aut] ,
Pietro Coretto [aut]
Maintainer: Luca Coraggio <luca.coraggio@unina.it>
Diff between qcluster versions 1.2.1 dated 2025-01-13 and 2.0.0 dated 2026-04-13
qcluster-1.2.1/qcluster/man/plot_bqs.Rd |only qcluster-1.2.1/qcluster/man/plot_mbcfit.Rd |only qcluster-1.2.1/qcluster/man/predict_mbcfit.Rd |only qcluster-1.2.1/qcluster/man/print_bqs.Rd |only qcluster-1.2.1/qcluster/man/print_mbcfit.Rd |only qcluster-2.0.0/qcluster/DESCRIPTION | 28 - qcluster-2.0.0/qcluster/MD5 | 116 ++--- qcluster-2.0.0/qcluster/NAMESPACE | 50 -- qcluster-2.0.0/qcluster/NEWS | 46 +- qcluster-2.0.0/qcluster/R/banknote.R |only qcluster-2.0.0/qcluster/R/bqs.R | 423 ++++++++++++++---- qcluster-2.0.0/qcluster/R/bqs_implementation_.R | 26 - qcluster-2.0.0/qcluster/R/bqs_rank.R | 101 +++- qcluster-2.0.0/qcluster/R/bqs_select.R | 145 ++++-- qcluster-2.0.0/qcluster/R/ckclp_.R | 45 + qcluster-2.0.0/qcluster/R/ckdat_.R | 8 qcluster-2.0.0/qcluster/R/clust2params.R | 63 ++ qcluster-2.0.0/qcluster/R/d2mix_.R | 17 qcluster-2.0.0/qcluster/R/dpboundary_.R | 4 qcluster-2.0.0/qcluster/R/dpnorm_.R | 21 qcluster-2.0.0/qcluster/R/gmix.R | 365 ++++++++++++--- qcluster-2.0.0/qcluster/R/mbind.R | 73 +++ qcluster-2.0.0/qcluster/R/mset_gmix.R | 136 +++++ qcluster-2.0.0/qcluster/R/mset_kmeans.R | 96 ++++ qcluster-2.0.0/qcluster/R/mset_pam.R | 106 ++++ qcluster-2.0.0/qcluster/R/mset_user.R | 236 +++++++++- qcluster-2.0.0/qcluster/R/parallel_threads_.R |only qcluster-2.0.0/qcluster/R/plot_bqs.R | 119 +++-- qcluster-2.0.0/qcluster/R/plot_clustering.R | 109 ++++ qcluster-2.0.0/qcluster/R/plot_mbcfit.R | 79 +++ qcluster-2.0.0/qcluster/R/predict_mbcfit.R | 109 ++++ qcluster-2.0.0/qcluster/R/print_bqs.R | 135 +++++ qcluster-2.0.0/qcluster/R/print_mbcfit.R | 58 ++ qcluster-2.0.0/qcluster/R/qcluster-package.R |only qcluster-2.0.0/qcluster/R/qscore.R | 91 +++ qcluster-2.0.0/qcluster/build/partial.rdb |binary qcluster-2.0.0/qcluster/man/banknote.Rd | 37 - qcluster-2.0.0/qcluster/man/bqs.Rd | 552 ++++++++++-------------- qcluster-2.0.0/qcluster/man/bqs_rank.Rd | 114 ++-- qcluster-2.0.0/qcluster/man/bqs_select.Rd | 105 ++-- qcluster-2.0.0/qcluster/man/clust2params.Rd | 66 +- qcluster-2.0.0/qcluster/man/gmix.Rd | 447 ++++++++----------- qcluster-2.0.0/qcluster/man/mbind.Rd | 115 ++--- qcluster-2.0.0/qcluster/man/mset_gmix.Rd | 216 ++++----- qcluster-2.0.0/qcluster/man/mset_kmeans.Rd | 184 +++----- qcluster-2.0.0/qcluster/man/mset_pam.Rd | 195 +++----- qcluster-2.0.0/qcluster/man/mset_user.Rd | 303 +++++-------- qcluster-2.0.0/qcluster/man/plot.bqs.Rd |only qcluster-2.0.0/qcluster/man/plot.mbcfit.Rd |only qcluster-2.0.0/qcluster/man/plot_clustering.Rd | 94 ++-- qcluster-2.0.0/qcluster/man/predict.mbcfit.Rd |only qcluster-2.0.0/qcluster/man/print.bqs.Rd |only qcluster-2.0.0/qcluster/man/print.mbcfit.Rd |only qcluster-2.0.0/qcluster/man/qcluster.Rd |only qcluster-2.0.0/qcluster/man/qscore.Rd | 117 ++--- qcluster-2.0.0/qcluster/src/Rsample_from.c | 2 qcluster-2.0.0/qcluster/src/ecm.c | 104 +++- qcluster-2.0.0/qcluster/src/ecm_winit.c | 63 ++ qcluster-2.0.0/qcluster/src/helper_score_smd.c | 4 qcluster-2.0.0/qcluster/src/score_hard.c | 12 qcluster-2.0.0/qcluster/src/score_smooth.c | 83 ++- qcluster-2.0.0/qcluster/tests |only 62 files changed, 3667 insertions(+), 1951 deletions(-)
Title: High-Dimensional Undirected Graph Estimation
Description: Provides a general framework for
high-dimensional undirected graph estimation. It integrates
data preprocessing, neighborhood screening, graph estimation,
and model selection techniques into a pipeline. In
preprocessing stage, the nonparanormal(npn) transformation is
applied to help relax the normality assumption. In the graph
estimation stage, the graph structure is estimated by
Meinshausen-Buhlmann graph estimation, the graphical lasso,
or the TIGER (tuning-insensitive graph estimation and
regression) method, and the first two can be further
accelerated by the lossy screening rule preselecting the
neighborhood of each variable by correlation thresholding. We
target on high-dimensional data analysis usually d >> n, and
the computation is memory-optimized using the sparse matrix
output. We also provide a computationally efficient approach,
correlation thresholding graph estimation. Three
regularization/thresholding parameter selection methods are
included in this package: (1)stab [...truncated...]
Author: Haoming Jiang [aut],
Xinyu Fei [aut],
Han Liu [aut],
Kathryn Roeder [aut],
John Lafferty [aut],
Larry Wasserman [aut],
Xingguo Li [aut],
Tuo Zhao [aut, cre]
Maintainer: Tuo Zhao <tourzhao@gatech.edu>
Diff between huge versions 1.5.1 dated 2026-03-31 and 1.6 dated 2026-04-13
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS.md | 5 ++++- R/huge.roc.R | 15 ++++++++------- 4 files changed, 18 insertions(+), 14 deletions(-)
Title: R Client for the 'VirusTotal' API
Description: Provides a comprehensive R interface to the 'VirusTotal' API v3.0
<https://docs.virustotal.com/>, a Google service that analyzes files and
URLs for viruses, worms, trojans and other malware. Features include
file/URL scanning, domain categorization, passive DNS information, IP
reputation analysis, IoC relationships, sandbox analysis, and
comment/voting systems. Implements rate limiting, error handling, and
response validation for robust security analysis workflows.
Author: Gaurav Sood [aut, cre]
Maintainer: Gaurav Sood <gsood07@gmail.com>
Diff between virustotal versions 0.5.0 dated 2025-12-16 and 0.6.0 dated 2026-04-13
virustotal-0.5.0/virustotal/R/post_comments.R |only virustotal-0.5.0/virustotal/man/add_comments.Rd |only virustotal-0.5.0/virustotal/man/as.data.frame.virustotal_response.Rd |only virustotal-0.5.0/virustotal/man/rate_limit_legacy.Rd |only virustotal-0.5.0/virustotal/man/virustotal2_GET.Rd |only virustotal-0.5.0/virustotal/man/virustotal2_POST.Rd |only virustotal-0.6.0/virustotal/DESCRIPTION | 30 - virustotal-0.6.0/virustotal/MD5 | 195 +++++----- virustotal-0.6.0/virustotal/NAMESPACE | 20 - virustotal-0.6.0/virustotal/NEWS.md | 33 + virustotal-0.6.0/virustotal/R/domain_report.R | 24 - virustotal-0.6.0/virustotal/R/download_file.R | 21 - virustotal-0.6.0/virustotal/R/errors.R | 5 virustotal-0.6.0/virustotal/R/file_report.R | 6 virustotal-0.6.0/virustotal/R/get_analysis.R |only virustotal-0.6.0/virustotal/R/get_behaviour_evtx.R |only virustotal-0.6.0/virustotal/R/get_behaviour_html.R |only virustotal-0.6.0/virustotal/R/get_behaviour_memdump.R |only virustotal-0.6.0/virustotal/R/get_behaviour_pcap.R |only virustotal-0.6.0/virustotal/R/get_behaviour_report.R |only virustotal-0.6.0/virustotal/R/get_domain_comments.R | 32 - virustotal-0.6.0/virustotal/R/get_domain_info.R | 5 virustotal-0.6.0/virustotal/R/get_domain_relationship.R | 5 virustotal-0.6.0/virustotal/R/get_domain_votes.R | 5 virustotal-0.6.0/virustotal/R/get_file_behaviour_mitre_trees.R |only virustotal-0.6.0/virustotal/R/get_file_behaviour_summary.R |only virustotal-0.6.0/virustotal/R/get_file_behaviours.R |only virustotal-0.6.0/virustotal/R/get_file_comments.R | 4 virustotal-0.6.0/virustotal/R/get_file_download_url.R | 4 virustotal-0.6.0/virustotal/R/get_file_relationships.R | 12 virustotal-0.6.0/virustotal/R/get_file_votes.R | 5 virustotal-0.6.0/virustotal/R/get_ip_comments.R | 20 - virustotal-0.6.0/virustotal/R/get_ip_info.R | 29 - virustotal-0.6.0/virustotal/R/get_ip_votes.R | 22 - virustotal-0.6.0/virustotal/R/get_url_comments.R | 20 - virustotal-0.6.0/virustotal/R/get_url_relationships.R | 51 +- virustotal-0.6.0/virustotal/R/get_url_votes.R | 18 virustotal-0.6.0/virustotal/R/ip_report.R | 28 - virustotal-0.6.0/virustotal/R/post_domain_comments.R | 33 - virustotal-0.6.0/virustotal/R/post_domain_votes.R | 37 + virustotal-0.6.0/virustotal/R/post_file_comments.R | 28 - virustotal-0.6.0/virustotal/R/post_file_votes.R | 30 - virustotal-0.6.0/virustotal/R/post_ip_comments.R | 31 - virustotal-0.6.0/virustotal/R/post_ip_votes.R | 33 - virustotal-0.6.0/virustotal/R/post_url_comments.R | 30 - virustotal-0.6.0/virustotal/R/post_url_votes.R | 23 - virustotal-0.6.0/virustotal/R/rate_limiting.R | 85 +--- virustotal-0.6.0/virustotal/R/rescan_domain.R |only virustotal-0.6.0/virustotal/R/rescan_file.R | 24 - virustotal-0.6.0/virustotal/R/rescan_ip.R |only virustotal-0.6.0/virustotal/R/rescan_url.R |only virustotal-0.6.0/virustotal/R/s3_classes.R | 94 +--- virustotal-0.6.0/virustotal/R/scan_file.R | 30 - virustotal-0.6.0/virustotal/R/scan_url.R | 27 - virustotal-0.6.0/virustotal/R/security.R | 141 ++----- virustotal-0.6.0/virustotal/R/set_key.R | 37 - virustotal-0.6.0/virustotal/R/url_report.R | 26 - virustotal-0.6.0/virustotal/R/utils.R | 86 ++-- virustotal-0.6.0/virustotal/R/virustotal.R | 129 +----- virustotal-0.6.0/virustotal/R/zzz.R | 14 virustotal-0.6.0/virustotal/README.md | 4 virustotal-0.6.0/virustotal/build/vignette.rds |binary virustotal-0.6.0/virustotal/inst/doc/using_virustotal.R | 11 virustotal-0.6.0/virustotal/inst/doc/using_virustotal.Rmd | 12 virustotal-0.6.0/virustotal/inst/doc/using_virustotal.html | 14 virustotal-0.6.0/virustotal/man/domain_report.Rd | 2 virustotal-0.6.0/virustotal/man/download_file.Rd | 2 virustotal-0.6.0/virustotal/man/file_report.Rd | 4 virustotal-0.6.0/virustotal/man/get_analysis.Rd |only virustotal-0.6.0/virustotal/man/get_behaviour_evtx.Rd |only virustotal-0.6.0/virustotal/man/get_behaviour_html.Rd |only virustotal-0.6.0/virustotal/man/get_behaviour_memdump.Rd |only virustotal-0.6.0/virustotal/man/get_behaviour_pcap.Rd |only virustotal-0.6.0/virustotal/man/get_behaviour_report.Rd |only virustotal-0.6.0/virustotal/man/get_domain_comments.Rd | 12 virustotal-0.6.0/virustotal/man/get_file_behaviour_mitre_trees.Rd |only virustotal-0.6.0/virustotal/man/get_file_behaviour_summary.Rd |only virustotal-0.6.0/virustotal/man/get_file_behaviours.Rd |only virustotal-0.6.0/virustotal/man/get_ip_comments.Rd | 2 virustotal-0.6.0/virustotal/man/get_ip_info.Rd | 9 virustotal-0.6.0/virustotal/man/get_ip_votes.Rd | 2 virustotal-0.6.0/virustotal/man/get_url_comments.Rd | 2 virustotal-0.6.0/virustotal/man/get_url_relationships.Rd | 6 virustotal-0.6.0/virustotal/man/ip_report.Rd | 4 virustotal-0.6.0/virustotal/man/post_domain_comments.Rd | 6 virustotal-0.6.0/virustotal/man/post_domain_votes.Rd | 6 virustotal-0.6.0/virustotal/man/post_file_comments.Rd | 2 virustotal-0.6.0/virustotal/man/post_ip_comments.Rd | 6 virustotal-0.6.0/virustotal/man/post_ip_votes.Rd | 10 virustotal-0.6.0/virustotal/man/post_url_comments.Rd | 2 virustotal-0.6.0/virustotal/man/rescan_domain.Rd |only virustotal-0.6.0/virustotal/man/rescan_file.Rd | 4 virustotal-0.6.0/virustotal/man/rescan_ip.Rd |only virustotal-0.6.0/virustotal/man/rescan_url.Rd |only virustotal-0.6.0/virustotal/man/sanitize_file_path.Rd | 2 virustotal-0.6.0/virustotal/man/scan_file.Rd | 6 virustotal-0.6.0/virustotal/man/scan_url.Rd | 4 virustotal-0.6.0/virustotal/man/set_key.Rd | 2 virustotal-0.6.0/virustotal/man/url_report.Rd | 3 virustotal-0.6.0/virustotal/man/validate_input.Rd |only virustotal-0.6.0/virustotal/man/virustotal-package.Rd | 3 virustotal-0.6.0/virustotal/man/virustotal_GET.Rd | 5 virustotal-0.6.0/virustotal/man/virustotal_POST.Rd | 3 virustotal-0.6.0/virustotal/tests/testthat/test-analysis.R |only virustotal-0.6.0/virustotal/tests/testthat/test-auth.R | 46 +- virustotal-0.6.0/virustotal/tests/testthat/test-behaviour.R |only virustotal-0.6.0/virustotal/tests/testthat/test-data-structures.R | 13 virustotal-0.6.0/virustotal/tests/testthat/test-domain-operations.R | 82 ++++ virustotal-0.6.0/virustotal/tests/testthat/test-error-handling.R | 35 - virustotal-0.6.0/virustotal/tests/testthat/test-file-operations.R | 93 ++-- virustotal-0.6.0/virustotal/tests/testthat/test-ip-operations.R | 74 +++ virustotal-0.6.0/virustotal/tests/testthat/test-pkg-style.R | 1 virustotal-0.6.0/virustotal/tests/testthat/test-rate-limiting.R | 43 -- virustotal-0.6.0/virustotal/tests/testthat/test-url-operations.R | 90 ++++ virustotal-0.6.0/virustotal/vignettes/using_virustotal.Rmd | 12 115 files changed, 1136 insertions(+), 1035 deletions(-)
Title: Deep Learning Model for Time Series Forecasting
Description: Provides deep learning models for time series forecasting
using Recurrent Neural Networks (RNN), Long Short-Term Memory (LSTM),
and Gated Recurrent Unit (GRU). These models capture temporal
dependencies and address vanishing gradient issues in sequential data.
The package enables efficient forecasting for univariate time series.
For methodological details see Jaiswal and co-authors (2022).
<doi:10.1007/s00521-021-06621-3>.
Author: Ronit Jaiswal [aut, cre],
Girish Kumar Jha [aut, ths, ctb],
Rajeev Ranjan Kumar [aut, ctb],
Kapil Choudhary [aut, ctb]
Maintainer: Ronit Jaiswal <ronitjaiswal2912@gmail.com>
This is a re-admission after prior archival of version 0.1.0 dated 2022-09-09
Diff between TSdeeplearning versions 0.1.0 dated 2022-09-09 and 1.0.1 dated 2026-04-13
DESCRIPTION | 19 +++++++++++++------ MD5 | 10 +++++----- man/Data_Maize.Rd | 5 ++++- man/GRU_ts.Rd | 2 +- man/LSTM_ts.Rd | 2 +- man/RNN_ts.Rd | 2 +- 6 files changed, 25 insertions(+), 15 deletions(-)
More information about TSdeeplearning at CRAN
Permanent link
Title: Soil Health Assessment Models for Assessing Soil Conditions and
Suitability
Description: Soil health assessment builds information to improve decision in
soil management. It facilitates assessment of soil conditions for crop suitability [such as those given by FAO
<https://www.fao.org/land-water/databases-and-software/crop-information/en/>],
groundwater recharge, fertility, erosion, salinization [<doi:10.1002/ldr.4211>],
carbon sequestration, irrigation potential, and status of soil resources.
Author: Christian Thine Omuto [aut, cre]
Maintainer: Christian Thine Omuto <thineomuto@yahoo.com>
This is a re-admission after prior archival of version 0.3.1 dated 2026-02-22
Diff between soilassessment versions 0.3.1 dated 2026-02-22 and 0.3.2 dated 2026-04-13
DESCRIPTION | 6 - MD5 | 114 ++++++++++++++++------------- R/ECharm_Info.R | 4 - R/PHharm_Info.R | 4 - R/bulkdenSuit.R |only R/demSuit.R |only R/erosionSuit.R |only R/fertilitySuit.R | 164 +++++++++++++++++++++---------------------- R/physicalSuit.R |only R/porositySuit.R |only R/slopeSuit.R | 164 +++++++++++++++++++++---------------------- man/CECSuit.Rd | 2 man/DataAvailabilityIndex.Rd | 2 man/ECSuit.Rd | 2 man/ECconversion1.Rd | 2 man/ECconversion2.Rd | 2 man/ECconversion3.Rd | 2 man/ESPSuit.Rd | 2 man/LGPSuit.Rd | 2 man/NPPmodel.Rd | 2 man/PHSuit.Rd | 2 man/RotCmoistcorrection.Rd | 2 man/RotCtempcorrection.Rd | 2 man/SASglobeData.Rd | 2 man/SOCSuit.Rd | 2 man/appendTextureclass.Rd | 2 man/bulkdenSuit.Rd |only man/carbonateSuit.Rd | 2 man/classCode.Rd | 2 man/classLUT.Rd | 2 man/classnames.Rd | 2 man/comparisonTable.Rd | 2 man/conversion.Rd | 2 man/createTexturedata.Rd | 2 man/demSuit.Rd |only man/depthSuit.Rd | 2 man/depthharm.Rd | 2 man/drainageSuit.Rd | 2 man/erodFUN.Rd | 2 man/erodibilityRisk.Rd | 2 man/erosionSuit.Rd |only man/erosivFUN.Rd | 2 man/featureRep.Rd | 2 man/fertilityRating.Rd | 2 man/fertilitySuit.Rd | 2 man/imageIndices.Rd | 2 man/permeabilityClass.Rd | 2 man/physicalSuit.Rd |only man/porositySuit.Rd |only man/predAccuracy.Rd | 2 man/rainSuit.Rd | 2 man/reclassifyMap.Rd | 2 man/regmodelSuit.Rd | 2 man/saltClass.Rd | 2 man/saltRating.Rd | 2 man/slopeSuit.Rd | 2 man/sloplenFUN.Rd | 2 man/stoneSuit.Rd | 2 man/suitability.Rd | 2 man/suitabilityClass.Rd | 2 man/surveyPoints.Rd | 2 man/tempSuit.Rd | 2 man/textureSuit.Rd | 2 63 files changed, 280 insertions(+), 270 deletions(-)
More information about soilassessment at CRAN
Permanent link
Title: qPCR Data Analysis
Description: Tools for qPCR data analysis using Delta Ct and Delta Delta Ct methods, including t-test, Wilcoxon-test, ANOVA models, and publication-ready visualizations. The package supports multiple target, and multiple reference genes, and uses a calculation framework adopted from Ganger et al. (2017) <doi:10.1186/s12859-017-1949-5> and Taylor et al. (2019) <doi:10.1016/j.tibtech.2018.12.002>, covering both the Livak and Pfaffl methods.
Author: Ghader Mirzaghaderi [aut, cre, cph]
Maintainer: Ghader Mirzaghaderi <mirzaghaderi@gmail.com>
Diff between rtpcr versions 2.1.6 dated 2026-03-14 and 2.1.7 dated 2026-04-13
DESCRIPTION | 6 MD5 | 14 NEWS.md | 6 inst/doc/Method.Rmd | 4 inst/doc/Method.html | 845 +++--------- inst/shinyapp/app.R | 9 inst/shinyapp/rsconnect/shinyapps.io/mirzaghaderi/rtpcr.dcf | 2 vignettes/Method.Rmd | 4 8 files changed, 267 insertions(+), 623 deletions(-)
Title: Read and Write ODS Files
Description: Read ODS (OpenDocument Spreadsheet) into R as data frame. Also support writing data frame into ODS file.
Author: Gerrit-Jan Schutten [aut],
Chung-hong Chan [aut, cre] ,
Peter Brohan [aut],
Detlef Steuer [aut] ,
Thomas J. Leeper [aut] ,
John Foster [ctb],
Sergio Oller [ctb],
Jim Hester [ctb] ,
Stephen Watts [ctb],
Arthur Katossky [ctb],
Stas Malavin [ctb],
Dunca [...truncated...]
Maintainer: Chung-hong Chan <chainsawtiney@gmail.com>
Diff between readODS versions 2.3.4 dated 2026-04-10 and 2.3.5 dated 2026-04-13
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS.md | 4 ++++ src/write_sheet_file_.cpp | 8 -------- 4 files changed, 10 insertions(+), 14 deletions(-)
Title: Client for the 'Notion API'
Description: Enable programmatic interaction with 'Notion' pages,
databases, blocks, comments, and users through the 'Notion API'
<https://developers.notion.com/>. Provides both synchronous and
asynchronous client interfaces for building workflows and automations
that integrate with 'Notion' workspaces. Supports all 'Notion API'
endpoints including content creation, data retrieval, and workspace
management.
Author: Brenwin Ang [aut, cre, cph]
Maintainer: Brenwin Ang <brenwinalj@gmail.com>
Diff between notionapi versions 0.1.0 dated 2025-09-02 and 0.2.0 dated 2026-04-13
notionapi-0.1.0/notionapi/inst/_vcr/notion-blocks-children-retrieve.yml |only notionapi-0.1.0/notionapi/inst/_vcr/notion-database-query.yml |only notionapi-0.1.0/notionapi/inst/_vcr/notion-pages-create-database.yml |only notionapi-0.1.0/notionapi/inst/_vcr/notion-pages-properties-update.yml |only notionapi-0.2.0/notionapi/DESCRIPTION | 10 notionapi-0.2.0/notionapi/MD5 | 119 notionapi-0.2.0/notionapi/NEWS.md | 54 notionapi-0.2.0/notionapi/R/client.R | 65 notionapi-0.2.0/notionapi/R/endpoints.R | 1809 ++++++++-- notionapi-0.2.0/notionapi/R/notion-request.R | 4 notionapi-0.2.0/notionapi/R/utils.R | 29 notionapi-0.2.0/notionapi/R/validation.R | 18 notionapi-0.2.0/notionapi/R/zzz.R | 2 notionapi-0.2.0/notionapi/README.md | 15 notionapi-0.2.0/notionapi/inst/_vcr/api-error-400-validation-multiline.yml | 57 notionapi-0.2.0/notionapi/inst/_vcr/api-error-401-unauthorized.yml | 33 notionapi-0.2.0/notionapi/inst/_vcr/api-error-404.yml | 33 notionapi-0.2.0/notionapi/inst/_vcr/notion-blocks-children-append.yml | 39 notionapi-0.2.0/notionapi/inst/_vcr/notion-blocks-children-list.yml |only notionapi-0.2.0/notionapi/inst/_vcr/notion-blocks-delete.yml | 38 notionapi-0.2.0/notionapi/inst/_vcr/notion-blocks-retrieve.yml | 37 notionapi-0.2.0/notionapi/inst/_vcr/notion-blocks-update.yml | 40 notionapi-0.2.0/notionapi/inst/_vcr/notion-comments-create.yml | 40 notionapi-0.2.0/notionapi/inst/_vcr/notion-comments-list.yml |only notionapi-0.2.0/notionapi/inst/_vcr/notion-comments-retrieve.yml | 39 notionapi-0.2.0/notionapi/inst/_vcr/notion-custom-emojis-list.yml |only notionapi-0.2.0/notionapi/inst/_vcr/notion-data-sources-create.yml |only notionapi-0.2.0/notionapi/inst/_vcr/notion-data-sources-list-templates.yml |only notionapi-0.2.0/notionapi/inst/_vcr/notion-data-sources-query.yml |only notionapi-0.2.0/notionapi/inst/_vcr/notion-data-sources-retrieve.yml |only notionapi-0.2.0/notionapi/inst/_vcr/notion-data-sources-update.yml |only notionapi-0.2.0/notionapi/inst/_vcr/notion-database-delete.yml |only notionapi-0.2.0/notionapi/inst/_vcr/notion-database-update.yml | 43 notionapi-0.2.0/notionapi/inst/_vcr/notion-databases-create.yml | 43 notionapi-0.2.0/notionapi/inst/_vcr/notion-databases-retrieve.yml | 41 notionapi-0.2.0/notionapi/inst/_vcr/notion-file-uploads-external-url.yml |only notionapi-0.2.0/notionapi/inst/_vcr/notion-file-uploads-list.yml |only notionapi-0.2.0/notionapi/inst/_vcr/notion-file-uploads-multi-part.yml |only notionapi-0.2.0/notionapi/inst/_vcr/notion-file-uploads-single-part.yml |only notionapi-0.2.0/notionapi/inst/_vcr/notion-pages-create.yml | 35 notionapi-0.2.0/notionapi/inst/_vcr/notion-pages-move.yml |only notionapi-0.2.0/notionapi/inst/_vcr/notion-pages-properties-retrieve.yml | 36 notionapi-0.2.0/notionapi/inst/_vcr/notion-pages-retrieve-markdown.yml |only notionapi-0.2.0/notionapi/inst/_vcr/notion-pages-retrieve.yml | 37 notionapi-0.2.0/notionapi/inst/_vcr/notion-pages-trash.yml |only notionapi-0.2.0/notionapi/inst/_vcr/notion-pages-update-markdown.yml |only notionapi-0.2.0/notionapi/inst/_vcr/notion-pages-update-null.yml |only notionapi-0.2.0/notionapi/inst/_vcr/notion-pages-update.yml |only notionapi-0.2.0/notionapi/inst/_vcr/notion-search.yml | 36 notionapi-0.2.0/notionapi/inst/_vcr/notion-users-list.yml | 33 notionapi-0.2.0/notionapi/inst/_vcr/notion-users-me.yml | 33 notionapi-0.2.0/notionapi/inst/_vcr/notion-users-retrieve.yml | 33 notionapi-0.2.0/notionapi/inst/_vcr/notion-views-create.yml |only notionapi-0.2.0/notionapi/inst/_vcr/notion-views-delete.yml |only notionapi-0.2.0/notionapi/inst/_vcr/notion-views-list.yml |only notionapi-0.2.0/notionapi/inst/_vcr/notion-views-queries-create.yml |only notionapi-0.2.0/notionapi/inst/_vcr/notion-views-queries-delete.yml |only notionapi-0.2.0/notionapi/inst/_vcr/notion-views-queries-results.yml |only notionapi-0.2.0/notionapi/inst/_vcr/notion-views-retrieve.yml |only notionapi-0.2.0/notionapi/inst/_vcr/notion-views-update.yml |only notionapi-0.2.0/notionapi/man/BlocksChildrenEndpoint.Rd | 40 notionapi-0.2.0/notionapi/man/BlocksEndpoint.Rd | 37 notionapi-0.2.0/notionapi/man/CommentsEndpoint.Rd | 72 notionapi-0.2.0/notionapi/man/CustomEmojisEndpoint.Rd |only notionapi-0.2.0/notionapi/man/DataSourcesEndpoint.Rd |only notionapi-0.2.0/notionapi/man/DatabasesEndpoint.Rd | 186 - notionapi-0.2.0/notionapi/man/FileUploadsEndpoint.Rd |only notionapi-0.2.0/notionapi/man/NotionClient.Rd | 46 notionapi-0.2.0/notionapi/man/PagesEndpoint.Rd | 242 + notionapi-0.2.0/notionapi/man/PagesPropertiesEndpoint.Rd | 66 notionapi-0.2.0/notionapi/man/UsersEndpoint.Rd | 13 notionapi-0.2.0/notionapi/man/ViewsEndpoint.Rd |only notionapi-0.2.0/notionapi/man/ViewsQueriesEndpoint.Rd |only notionapi-0.2.0/notionapi/man/no_config.Rd | 31 notionapi-0.2.0/notionapi/tests/testthat/_snaps/endpoints.md | 34 notionapi-0.2.0/notionapi/tests/testthat/_snaps/print.md | 3 notionapi-0.2.0/notionapi/tests/testthat/test-client.R | 9 notionapi-0.2.0/notionapi/tests/testthat/test-endpoints.R | 681 +++ notionapi-0.2.0/notionapi/tests/testthat/test.pdf |only 79 files changed, 3081 insertions(+), 1230 deletions(-)
Title: Weighted Adaptive Prediction with Structured Dependence
Description: Builds a joint probabilistic forecast across series and horizons using adaptive copulas (Gaussian/t) with shrinkage-repaired correlations. At the low level it calls a probabilistic mixer per series and horizon, which backtests several simple predictors, predicts next-window Continuous Ranked Probability Score (CRPS), and converts those scores into softmax weights to form a calibrated mixture (r/q/p/dfun). The mixer blends eight simple predictors: a naive predictor that wraps the last move in a PERT distribution; an arima predictor using auto.arima for one-step forecasts; an Exponentially Weighted Moving Average (EWMA) gaussian predictor with mean/variance under a Gaussian; a historical bootstrap predictor that resamples past horizon-aligned moves; a drift residual bootstrap predictor combining linear trend with bootstrapped residuals; a volatility-scaled naive predictor centering on the last move and scaling by recent volatility; a robust median mad predictor using median/MAD with Lapl [...truncated...]
Author: Giancarlo Vercellino [aut, cre, cph]
Maintainer: Giancarlo Vercellino <giancarlo.vercellino@gmail.com>
Diff between wired versions 1.0.0 dated 2026-02-06 and 1.0.1 dated 2026-04-13
DESCRIPTION | 6 - MD5 | 10 +- NEWS.md | 4 + R/main.R | 151 ++++++++++++++++++++++++++++++++++++++++++++- man/wired.Rd | 2 tests/testthat/test-main.R | 2 6 files changed, 163 insertions(+), 12 deletions(-)
Title: Convert 'tinytest' Output to JUnit XML
Description: Unit testing is a solid component of automated CI/CD pipelines.
'tinytest' - a lightweight, zero-dependency alternative to 'testthat' was developed.
To be able to integrate 'tinytests' results into common CI/CD systems the 'tinytests'-object
is converted to JUnit XML format. 'tinytest2JUnit' enables this conversion
while staying lightweight, having only 'tinytest' as its dependency.
Author: Anne-Katrin Hess [aut],
Lennart Tuijnder [aut, cre]
Maintainer: Lennart Tuijnder <lennart.tuijnder@openanalytics.eu>
Diff between tinytest2JUnit versions 1.1.2 dated 2024-05-30 and 1.1.3 dated 2026-04-13
DESCRIPTION | 15 +++++++-------- MD5 | 19 ++++++++++--------- NEWS.md | 5 +++++ R/writeJUnit.R | 4 ++-- inst/example_package/fib/man |only inst/example_tests/skips/test_partial_skipped.R | 4 ++-- inst/tinytest/test_constructJUnitTag.R | 6 +++--- inst/tinytest/test_xml.R | 2 +- man/constructTestsuitesTag.Rd | 2 +- man/testPackage.Rd | 2 +- man/writeJUnit.Rd | 4 ++-- 11 files changed, 34 insertions(+), 29 deletions(-)
More information about tinytest2JUnit at CRAN
Permanent link
Title: Graphical Visualizations for ROBUST-RCT Risk of Bias Assessments
Description: Provides visual representations of risk-of-bias assessments
using the ROBUST-RCT framework, as described in Wang et al. (2025)
<doi:10.1136/bmj-2024-081199>. The graphical visualization displays
both factual evaluation (Step 1) and judgment (Step 2).
Author: Pedro Rodrigues Vidor [aut, cre],
Yohan Casiraghi [ctb],
Sofia Simoni Rossi Fermo [ctb],
Adolfo Moraes de Souza [ctb],
Patricia Klarmann Ziegelmann [ctb],
Maria Ines Schmidt [ctb],
Maicon Falavigna [ctb]
Maintainer: Pedro Rodrigues Vidor <pedro.vidor@ufrgs.br>
Diff between eclipseplot versions 0.9.4 dated 2026-02-19 and 0.9.6 dated 2026-04-13
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- R/eclipseplot.R | 29 ++++++++++++++++++++++------- man/eclipsedf.Rd | 2 +- man/eclipseplot.Rd | 5 ++++- 5 files changed, 34 insertions(+), 16 deletions(-)
Title: Header-Only 'C++' and 'R' Interface
Description: Provides a header only, 'C++' interface to 'R' with enhancements over 'cpp11'. Enforces copy-on-write
semantics consistent with 'R' behavior. Offers native support for ALTREP objects, 'UTF-8' string handling, modern
'C++11' features and idioms, and reduced memory requirements. Allows for vendoring, making it useful for restricted
environments. Compared to 'cpp11', it adds support for converting 'C++' maps to 'R' lists, 'Roxygen' documentation
directly in 'C++' code, proper handling of matrix attributes, support for nullable external pointers, bidirectional
copy of complex number types, flexibility in type conversions, use of nullable pointers, and various performance
optimizations.
Author: Mauricio Vargas Sepulveda [aut, cre] ,
Posit Software, PBC [aut]
Maintainer: Mauricio Vargas Sepulveda <m.vargas.sepulveda@gmail.com>
Diff between cpp4r versions 0.4.0 dated 2025-12-04 and 0.5.0 dated 2026-04-13
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS.md | 4 ++++ inst/include/cpp4r/data_frame.hpp | 9 +-------- 4 files changed, 11 insertions(+), 14 deletions(-)
Title: Data Visualization and Statistical Tools for Agroindustrial
Experiments
Description: Set of tools for statistical analysis, visualization, and reporting of
agroindustrial and agricultural experiments. The package provides functions
to perform one-way and two-way ANOVA with post-hoc tests (Tukey HSD and
Duncan MRT), Welch ANOVA for heteroscedastic data, and the Games-Howell
post-hoc test as a robust alternative when variance homogeneity fails.
Normality of residuals is assessed with the Shapiro-Wilk test and
homoscedasticity with the Fligner-Killeen test; the appropriate statistical
path is selected automatically based on these diagnostics. Coefficients of
variation and statistical power (via one-way ANOVA power analysis) are
reported alongside the post-hoc letter display. High-level wrappers allow
automated multi-variable analysis with optional clustering by one or two
experimental factors, with support for custom level ordering and relabeling.
Results are returned as 'ggplot2' boxplots with mean and letter annotations,
wide-format summary tables ready for publication [...truncated...]
Author: Joaquin Alejandro Salinas Angeles [aut, cre]
Maintainer: Joaquin Alejandro Salinas Angeles <joaquinsa03@gmail.com>
Diff between agrobox versions 0.2.1 dated 2026-01-10 and 0.3.0 dated 2026-04-13
DESCRIPTION | 71 +- MD5 | 24 NAMESPACE | 60 + NEWS.md | 64 ++ R/agrobox.R | 1380 ++++++++++++++++++++++++++++++-------------- R/agroexcel.R | 1 R/agrosintesis.R | 366 +++++++++-- R/globals.R | 5 R/nitrogeno_liberacion.R |only R/pimiento_hibridacion.R |only data |only man/agrobox.Rd | 324 ++++++++-- man/agrosintesis.Rd | 28 man/nitrogeno_liberacion.Rd |only man/pimiento_hibridacion.Rd |only 15 files changed, 1748 insertions(+), 575 deletions(-)
Title: Nonnegative Matrix Factorization
Description: Nonnegative matrix factorization (NMF) is a technique to factorize a matrix with nonnegative values into the product of two matrices. Covariates are also allowed. Parallel computing is an option to enhance the speed and high-dimensional and large scale (and/or sparse) data are allowed. Relevant papers include: Wang Y. X. and Zhang Y. J. (2012). Nonnegative matrix factorization: A comprehensive review. IEEE Transactions on Knowledge and Data Engineering, 25(6): 1336-1353 <doi:10.1109/TKDE.2012.51> and Kim H. and Park H. (2008). Nonnegative matrix factorization based on alternating nonnegativity constrained least squares and active set method. SIAM Journal on Matrix Analysis and Applications, 30(2): 713-730 <doi:10.1137/07069239X>.
Author: Michail Tsagris [aut, cre],
Nikolaos Kontemeniotis [aut],
Christos Adam [aut]
Maintainer: Michail Tsagris <mtsagris@uoc.gr>
Diff between nnmf versions 1.3 dated 2026-03-17 and 1.4 dated 2026-04-12
nnmf-1.3/nnmf/src/als.cpp |only nnmf-1.4/nnmf/DESCRIPTION | 11 - nnmf-1.4/nnmf/MD5 | 43 +++-- nnmf-1.4/nnmf/NAMESPACE | 2 nnmf-1.4/nnmf/R/RcppExports.R | 12 + nnmf-1.4/nnmf/R/init.R | 6 nnmf-1.4/nnmf/R/nmf.hals.R | 4 nnmf-1.4/nnmf/R/nmf.manh.R | 4 nnmf-1.4/nnmf/R/nmf.qp.R | 249 ---------------------------------- nnmf-1.4/nnmf/R/nmf.sqp.R | 2 nnmf-1.4/nnmf/R/nmfqp.pred.R | 45 ------ nnmf-1.4/nnmf/R/nmfqp.reg.R | 70 --------- nnmf-1.4/nnmf/inst |only nnmf-1.4/nnmf/man/init.Rd | 9 - nnmf-1.4/nnmf/man/nmf.qp.Rd | 34 +--- nnmf-1.4/nnmf/man/nmfqp.reg.Rd | 15 +- nnmf-1.4/nnmf/man/nnmf-package.Rd | 4 nnmf-1.4/nnmf/src/Makevars | 4 nnmf-1.4/nnmf/src/Makevars.win | 5 nnmf-1.4/nnmf/src/RcppExports.cpp | 47 +++++- nnmf-1.4/nnmf/src/fnnls_core.cpp |only nnmf-1.4/nnmf/src/fnnls_core_help.cpp |only nnmf-1.4/nnmf/src/nmf_pred.cpp |only nnmf-1.4/nnmf/src/nmf_qp.cpp |only nnmf-1.4/nnmf/src/nmf_reg.cpp |only 25 files changed, 134 insertions(+), 432 deletions(-)
Title: Access the Weekly 'TidyTuesday' Project Dataset
Description: 'TidyTuesday' is a project by the 'Data Science Learning
Community' in which they post a weekly dataset in a public data
repository (<https://github.com/rfordatascience/tidytuesday>) for
people to analyze and visualize. This package provides the tools to
easily download this data and the description of the source.
Author: Jon Harmon [aut, cre] ,
Ellis Hughes [aut],
Thomas Mock [ctb],
Data Science Learning Community [dtc]
Maintainer: Jon Harmon <jonthegeek@gmail.com>
Diff between tidytuesdayR versions 1.2.1 dated 2025-04-29 and 1.3.2 dated 2026-04-12
tidytuesdayR-1.2.1/tidytuesdayR/R/aaa-shared.R |only tidytuesdayR-1.2.1/tidytuesdayR/man/shared-params.Rd |only tidytuesdayR-1.3.2/tidytuesdayR/DESCRIPTION | 20 tidytuesdayR-1.3.2/tidytuesdayR/MD5 | 135 +- tidytuesdayR-1.3.2/tidytuesdayR/NEWS.md | 28 tidytuesdayR-1.3.2/tidytuesdayR/R/aaa-conditions.R |only tidytuesdayR-1.3.2/tidytuesdayR/R/aaa-shared_params.R |only tidytuesdayR-1.3.2/tidytuesdayR/R/github_api.R | 28 tidytuesdayR-1.3.2/tidytuesdayR/R/last_tuesday.R | 4 tidytuesdayR-1.3.2/tidytuesdayR/R/tt_available.R | 25 tidytuesdayR-1.3.2/tidytuesdayR/R/tt_check_date.R | 44 tidytuesdayR-1.3.2/tidytuesdayR/R/tt_clean.R | 10 tidytuesdayR-1.3.2/tidytuesdayR/R/tt_curate_data.R | 17 tidytuesdayR-1.3.2/tidytuesdayR/R/tt_curate_utils.R | 13 tidytuesdayR-1.3.2/tidytuesdayR/R/tt_download.R | 11 tidytuesdayR-1.3.2/tidytuesdayR/R/tt_download_file.R | 19 tidytuesdayR-1.3.2/tidytuesdayR/R/tt_intro.R | 10 tidytuesdayR-1.3.2/tidytuesdayR/R/tt_load.R | 8 tidytuesdayR-1.3.2/tidytuesdayR/R/tt_load_gh.R | 2 tidytuesdayR-1.3.2/tidytuesdayR/R/tt_master_file.R | 3 tidytuesdayR-1.3.2/tidytuesdayR/R/tt_meta.R | 96 +- tidytuesdayR-1.3.2/tidytuesdayR/R/tt_save_dataset.R | 14 tidytuesdayR-1.3.2/tidytuesdayR/R/tt_submit.R | 271 ++++- tidytuesdayR-1.3.2/tidytuesdayR/R/use_tidytemplate.R | 17 tidytuesdayR-1.3.2/tidytuesdayR/R/utils.R | 39 tidytuesdayR-1.3.2/tidytuesdayR/build/vignette.rds |binary tidytuesdayR-1.3.2/tidytuesdayR/inst/doc/curating.Rmd | 17 tidytuesdayR-1.3.2/tidytuesdayR/inst/doc/curating.html | 93 + tidytuesdayR-1.3.2/tidytuesdayR/man/dot-pkg_abort.Rd |only tidytuesdayR-1.3.2/tidytuesdayR/man/dot-shared-params.Rd |only tidytuesdayR-1.3.2/tidytuesdayR/man/printing.Rd | 2 tidytuesdayR-1.3.2/tidytuesdayR/man/readme.Rd | 2 tidytuesdayR-1.3.2/tidytuesdayR/man/tt_available.Rd | 2 tidytuesdayR-1.3.2/tidytuesdayR/man/tt_clean.Rd | 2 tidytuesdayR-1.3.2/tidytuesdayR/man/tt_curate_data.Rd | 5 tidytuesdayR-1.3.2/tidytuesdayR/man/tt_download.Rd | 2 tidytuesdayR-1.3.2/tidytuesdayR/man/tt_download_file.Rd | 2 tidytuesdayR-1.3.2/tidytuesdayR/man/tt_intro.Rd | 2 tidytuesdayR-1.3.2/tidytuesdayR/man/tt_load.Rd | 2 tidytuesdayR-1.3.2/tidytuesdayR/man/tt_load_gh.Rd | 2 tidytuesdayR-1.3.2/tidytuesdayR/man/tt_meta.Rd | 25 tidytuesdayR-1.3.2/tidytuesdayR/man/tt_print.Rd | 2 tidytuesdayR-1.3.2/tidytuesdayR/man/tt_save_dataset.Rd | 2 tidytuesdayR-1.3.2/tidytuesdayR/man/tt_submit.Rd | 2 tidytuesdayR-1.3.2/tidytuesdayR/man/use_tidytemplate.Rd | 2 tidytuesdayR-1.3.2/tidytuesdayR/tests/testthat.R | 1 tidytuesdayR-1.3.2/tidytuesdayR/tests/testthat/_snaps/aaa-conditions.md |only tidytuesdayR-1.3.2/tidytuesdayR/tests/testthat/_snaps/github_api.md |only tidytuesdayR-1.3.2/tidytuesdayR/tests/testthat/_snaps/last_tuesday.md |only tidytuesdayR-1.3.2/tidytuesdayR/tests/testthat/_snaps/tt_available.md | 10 tidytuesdayR-1.3.2/tidytuesdayR/tests/testthat/_snaps/tt_check_date.md |only tidytuesdayR-1.3.2/tidytuesdayR/tests/testthat/_snaps/tt_download.md |only tidytuesdayR-1.3.2/tidytuesdayR/tests/testthat/_snaps/tt_download_file.md |only tidytuesdayR-1.3.2/tidytuesdayR/tests/testthat/_snaps/tt_load_gh.md | 11 tidytuesdayR-1.3.2/tidytuesdayR/tests/testthat/_snaps/tt_meta.md | 25 tidytuesdayR-1.3.2/tidytuesdayR/tests/testthat/_snaps/tt_meta/meta-from-options.yaml |only tidytuesdayR-1.3.2/tidytuesdayR/tests/testthat/_snaps/tt_submit.md | 55 - tidytuesdayR-1.3.2/tidytuesdayR/tests/testthat/fixtures/create_fixtures.R | 11 tidytuesdayR-1.3.2/tidytuesdayR/tests/testthat/fixtures/tt_submission_large_img |only tidytuesdayR-1.3.2/tidytuesdayR/tests/testthat/helper-call_gh.R |only tidytuesdayR-1.3.2/tidytuesdayR/tests/testthat/test-aaa-conditions.R |only tidytuesdayR-1.3.2/tidytuesdayR/tests/testthat/test-github_api.R | 61 - tidytuesdayR-1.3.2/tidytuesdayR/tests/testthat/test-last_tuesday.R | 20 tidytuesdayR-1.3.2/tidytuesdayR/tests/testthat/test-tt_available.R | 9 tidytuesdayR-1.3.2/tidytuesdayR/tests/testthat/test-tt_check_date.R | 67 - tidytuesdayR-1.3.2/tidytuesdayR/tests/testthat/test-tt_curate_data.R | 9 tidytuesdayR-1.3.2/tidytuesdayR/tests/testthat/test-tt_curate_utils.R | 2 tidytuesdayR-1.3.2/tidytuesdayR/tests/testthat/test-tt_download.R | 10 tidytuesdayR-1.3.2/tidytuesdayR/tests/testthat/test-tt_download_file.R | 66 - tidytuesdayR-1.3.2/tidytuesdayR/tests/testthat/test-tt_load.R | 8 tidytuesdayR-1.3.2/tidytuesdayR/tests/testthat/test-tt_load_gh.R | 5 tidytuesdayR-1.3.2/tidytuesdayR/tests/testthat/test-tt_master_file.R | 17 tidytuesdayR-1.3.2/tidytuesdayR/tests/testthat/test-tt_meta.R | 54 - tidytuesdayR-1.3.2/tidytuesdayR/tests/testthat/test-tt_save_dataset.R | 1 tidytuesdayR-1.3.2/tidytuesdayR/tests/testthat/test-tt_submit.R | 471 +++++++++- tidytuesdayR-1.3.2/tidytuesdayR/vignettes/curating.Rmd | 17 76 files changed, 1389 insertions(+), 521 deletions(-)
Title: Analysis and Simulation of Plant Disease Progress Curves
Description: Tools for analysis, visualization, and simulation of plant disease
progress curves. Includes functions to calculate area-under-the-curve
summaries, fit and compare exponential, monomolecular, logistic, and
Gompertz models using linear or nonlinear regression, work with single or
multiple epidemics, and produce 'ggplot2'-based visualizations. Also
includes an experimental powdery mildew dataset for reproducible teaching
and research workflows. See Madden, Hughes, and van den Bosch (2007)
<doi:10.1094/9780890545058> for background on the epidemiological methods.
Author: Kaique dos S. Alves [aut, cre] ,
Emerson M. Del Ponte [aut] ,
Adam H. Sparks [aut]
Maintainer: Kaique dos S. Alves <kaiquedsalves@gmail.com>
Diff between epifitter versions 0.3.0 dated 2021-06-14 and 1.0.0 dated 2026-04-12
epifitter-0.3.0/epifitter/inst/doc/fitting.R |only epifitter-0.3.0/epifitter/inst/doc/fitting.Rmd |only epifitter-0.3.0/epifitter/inst/doc/fitting.html |only epifitter-0.3.0/epifitter/inst/doc/simulation.R |only epifitter-0.3.0/epifitter/inst/doc/simulation.Rmd |only epifitter-0.3.0/epifitter/inst/doc/simulation.html |only epifitter-0.3.0/epifitter/vignettes/fitting.Rmd |only epifitter-0.3.0/epifitter/vignettes/simulation.Rmd |only epifitter-1.0.0/epifitter/DESCRIPTION | 53 + epifitter-1.0.0/epifitter/MD5 | 121 ++- epifitter-1.0.0/epifitter/NAMESPACE | 27 epifitter-1.0.0/epifitter/NEWS.md | 12 epifitter-1.0.0/epifitter/R/AUDPC.R | 99 +-- epifitter-1.0.0/epifitter/R/AUDPC_2_points.R |only epifitter-1.0.0/epifitter/R/AUDPS.R | 104 +-- epifitter-1.0.0/epifitter/R/PowderyMildew.R |only epifitter-1.0.0/epifitter/R/epifitter-package.R |only epifitter-1.0.0/epifitter/R/expo_fun.R | 14 epifitter-1.0.0/epifitter/R/fit_lin.R | 155 +--- epifitter-1.0.0/epifitter/R/fit_multi.R | 283 +++++--- epifitter-1.0.0/epifitter/R/fit_nlin.R | 346 +++++------ epifitter-1.0.0/epifitter/R/fit_nlin2.R | 308 +++++---- epifitter-1.0.0/epifitter/R/gompi_fun.R | 14 epifitter-1.0.0/epifitter/R/logi_fun.R | 14 epifitter-1.0.0/epifitter/R/mono_fun.R | 14 epifitter-1.0.0/epifitter/R/plot_fit.R | 57 + epifitter-1.0.0/epifitter/R/print.fit_lin.R | 16 epifitter-1.0.0/epifitter/R/print.fit_nlin2.R | 18 epifitter-1.0.0/epifitter/R/sim_exponential.R | 21 epifitter-1.0.0/epifitter/R/sim_gompertz.R | 22 epifitter-1.0.0/epifitter/R/sim_logistic.R | 22 epifitter-1.0.0/epifitter/R/sim_monomolecular.R | 22 epifitter-1.0.0/epifitter/R/utils-aud.R |only epifitter-1.0.0/epifitter/R/utils-validation.R |only epifitter-1.0.0/epifitter/README.md | 97 ++- epifitter-1.0.0/epifitter/build/vignette.rds |binary epifitter-1.0.0/epifitter/inst/CITATION |only epifitter-1.0.0/epifitter/inst/doc/area-under-curve.R |only epifitter-1.0.0/epifitter/inst/doc/area-under-curve.Rmd |only epifitter-1.0.0/epifitter/inst/doc/area-under-curve.html |only epifitter-1.0.0/epifitter/inst/doc/getting-started.R |only epifitter-1.0.0/epifitter/inst/doc/getting-started.Rmd |only epifitter-1.0.0/epifitter/inst/doc/getting-started.html |only epifitter-1.0.0/epifitter/inst/doc/model-fitting.R |only epifitter-1.0.0/epifitter/inst/doc/model-fitting.Rmd |only epifitter-1.0.0/epifitter/inst/doc/model-fitting.html |only epifitter-1.0.0/epifitter/inst/doc/powdery-mildew-data.R |only epifitter-1.0.0/epifitter/inst/doc/powdery-mildew-data.Rmd |only epifitter-1.0.0/epifitter/inst/doc/powdery-mildew-data.html |only epifitter-1.0.0/epifitter/inst/doc/simulation-workflows.R |only epifitter-1.0.0/epifitter/inst/doc/simulation-workflows.Rmd |only epifitter-1.0.0/epifitter/inst/doc/simulation-workflows.html |only epifitter-1.0.0/epifitter/man/AUDPC.Rd | 60 + epifitter-1.0.0/epifitter/man/AUDPC_2_points.Rd |only epifitter-1.0.0/epifitter/man/AUDPS.Rd | 59 + epifitter-1.0.0/epifitter/man/PowderyMildew.Rd | 42 - epifitter-1.0.0/epifitter/man/epifitter-package.Rd |only epifitter-1.0.0/epifitter/man/expo_fun.Rd | 23 epifitter-1.0.0/epifitter/man/fit_lin.Rd | 33 - epifitter-1.0.0/epifitter/man/fit_multi.Rd | 112 +-- epifitter-1.0.0/epifitter/man/fit_nlin.Rd | 43 - epifitter-1.0.0/epifitter/man/fit_nlin2.Rd | 56 + epifitter-1.0.0/epifitter/man/gompi_fun.Rd | 22 epifitter-1.0.0/epifitter/man/logi_fun.Rd | 37 - epifitter-1.0.0/epifitter/man/mono_fun.Rd | 22 epifitter-1.0.0/epifitter/man/plot_fit.Rd | 55 - epifitter-1.0.0/epifitter/man/print.fit_lin.Rd | 16 epifitter-1.0.0/epifitter/man/print.fit_nlin2.Rd | 16 epifitter-1.0.0/epifitter/man/sim_exponential.Rd | 40 - epifitter-1.0.0/epifitter/man/sim_gompertz.Rd | 43 - epifitter-1.0.0/epifitter/man/sim_logistic.Rd | 43 - epifitter-1.0.0/epifitter/man/sim_monomolecular.Rd | 43 - epifitter-1.0.0/epifitter/tests |only epifitter-1.0.0/epifitter/vignettes/area-under-curve.Rmd |only epifitter-1.0.0/epifitter/vignettes/getting-started.Rmd |only epifitter-1.0.0/epifitter/vignettes/model-fitting.Rmd |only epifitter-1.0.0/epifitter/vignettes/powdery-mildew-data.Rmd |only epifitter-1.0.0/epifitter/vignettes/simulation-workflows.Rmd |only 78 files changed, 1520 insertions(+), 1084 deletions(-)
Title: Fast Non-Negative Least Squares
Description: Provides a fast algorithm for solving non-negative least squares
problems. It implements the Fast Non-Negative Least Squares algorithm.
of Bro and De Jong (1997)<doi:10.1002/(SICI)1099-128X(199709/10)11:53.0.CO;2-L>.
Author: Nikolaos Kontemeniotis [aut, cre],
Michail Tsagris [aut]
Maintainer: Nikolaos Kontemeniotis <kontemeniotisn@gmail.com>
Diff between nnsolve versions 0.0.1 dated 2026-03-24 and 0.0.2 dated 2026-04-12
nnsolve-0.0.1/nnsolve/build |only nnsolve-0.0.1/nnsolve/tests |only nnsolve-0.0.2/nnsolve/DESCRIPTION | 17 +--- nnsolve-0.0.2/nnsolve/MD5 | 35 ++++++--- nnsolve-0.0.2/nnsolve/NAMESPACE | 4 - nnsolve-0.0.2/nnsolve/R/RcppExports.R | 10 ++ nnsolve-0.0.2/nnsolve/R/fnnls.R | 34 --------- nnsolve-0.0.2/nnsolve/R/fnnls_reg.R |only nnsolve-0.0.2/nnsolve/R/fnnls_regs.R |only nnsolve-0.0.2/nnsolve/R/nnsolve-package.R | 7 + nnsolve-0.0.2/nnsolve/inst |only nnsolve-0.0.2/nnsolve/man/fnnls.Rd | 27 +++---- nnsolve-0.0.2/nnsolve/man/fnnls_reg.Rd |only nnsolve-0.0.2/nnsolve/man/fnnls_regs.Rd |only nnsolve-0.0.2/nnsolve/man/nnsolve-package.Rd | 2 nnsolve-0.0.2/nnsolve/src/Makevars |only nnsolve-0.0.2/nnsolve/src/Makevars.win |only nnsolve-0.0.2/nnsolve/src/RcppExports.cpp | 40 +++++++++++ nnsolve-0.0.2/nnsolve/src/fnnls.cpp | 93 ++------------------------ nnsolve-0.0.2/nnsolve/src/fnnls_core.cpp |only nnsolve-0.0.2/nnsolve/src/fnnls_core_help.cpp |only nnsolve-0.0.2/nnsolve/src/fnnls_reg.cpp |only nnsolve-0.0.2/nnsolve/src/fnnls_regs.cpp |only 23 files changed, 112 insertions(+), 157 deletions(-)
Title: Estimation of Recombination Rate and Maternal LD in Half-Sibs
Description: Paternal recombination rate and maternal linkage disequilibrium
(LD) are estimated for pairs of biallelic markers such as single nucleotide
polymorphisms (SNPs) from progeny genotypes and sire haplotypes. The
implementation relies on paternal half-sib families. If maternal half-sib
families are used, the roles of sire/dam are swapped. Multiple families can
be considered. For parameter estimation, at least one sire has to be double
heterozygous at the investigated pairs of SNPs.
Based on recombination rates, genetic distances between markers can be
estimated. Markers with unusually large recombination rate to markers in
close proximity (i.e. putatively misplaced markers) shall be discarded in
this derivation.
*A pipeline is available at GitHub*
<https://github.com/wittenburg/hsrecombi>
Hampel, Teuscher, Gomez-Raya, Doschoris, Wittenburg (2018) "Estimation of
recombination rate and maternal linkage disequilibrium in half-sibs"
<doi:10.3389/fgene.2018.00186>.
Gomez-Raya (2012) [...truncated...]
Author: Doerte Wittenburg [aut, cre]
Maintainer: Doerte Wittenburg <wittenburg@fbn-dummerstorf.de>
This is a re-admission after prior archival of version 1.1.0 dated 2026-03-27
Diff between hsrecombi versions 1.1.0 dated 2026-03-27 and 1.1.1 dated 2026-04-12
hsrecombi-1.1.0/hsrecombi/build/vignette.rds |only hsrecombi-1.1.0/hsrecombi/inst |only hsrecombi-1.1.0/hsrecombi/vignettes |only hsrecombi-1.1.1/hsrecombi/DESCRIPTION | 13 +++++-------- hsrecombi-1.1.1/hsrecombi/MD5 | 9 ++------- hsrecombi-1.1.1/hsrecombi/NEWS.md | 4 ++++ 6 files changed, 11 insertions(+), 15 deletions(-)
Title: R Client for the YouTube Analytics and Reporting API
Description: Provides access to YouTube Analytics API v2 for retrieving
YouTube Analytics data including views, engagement metrics, demographics, and
revenue data. Supports OAuth 2.0 authentication and channel group management.
See <https://developers.google.com/youtube/analytics/> for API documentation.
Author: Gaurav Sood [aut, cre]
Maintainer: Gaurav Sood <gsood07@gmail.com>
Diff between tubern versions 0.2.1 dated 2025-03-24 and 0.5.0 dated 2026-04-12
tubern-0.2.1/tubern/tests/testthat/token_file.rds.enc |only tubern-0.5.0/tubern/DESCRIPTION | 22 - tubern-0.5.0/tubern/LICENSE | 2 tubern-0.5.0/tubern/MD5 | 106 +++-- tubern-0.5.0/tubern/NAMESPACE | 34 + tubern-0.5.0/tubern/NEWS.md | 90 ++++ tubern-0.5.0/tubern/R/add_group_item.R | 8 tubern-0.5.0/tubern/R/add_groups.R | 19 tubern-0.5.0/tubern/R/data_transformation.R |only tubern-0.5.0/tubern/R/date_helpers.R |only tubern-0.5.0/tubern/R/delete_group.R | 8 tubern-0.5.0/tubern/R/delete_group_item.R | 10 tubern-0.5.0/tubern/R/error_handling.R |only tubern-0.5.0/tubern/R/get_report.R | 166 ++++++-- tubern-0.5.0/tubern/R/list_group_items.R | 8 tubern-0.5.0/tubern/R/list_groups.R | 27 - tubern-0.5.0/tubern/R/report_helpers.R |only tubern-0.5.0/tubern/R/tubern.R | 77 +-- tubern-0.5.0/tubern/R/update_group.R | 6 tubern-0.5.0/tubern/R/validation_helpers.R |only tubern-0.5.0/tubern/R/yt_oauth.R | 201 ++++++++-- tubern-0.5.0/tubern/README.md | 198 +++++++++ tubern-0.5.0/tubern/build/vignette.rds |binary tubern-0.5.0/tubern/inst/WORDLIST |only tubern-0.5.0/tubern/inst/doc/basic_tubern.Rmd | 2 tubern-0.5.0/tubern/inst/doc/basic_tubern.html | 9 tubern-0.5.0/tubern/inst/doc/tubern_examples.R |only tubern-0.5.0/tubern/inst/doc/tubern_examples.Rmd |only tubern-0.5.0/tubern/inst/doc/tubern_examples.html |only tubern-0.5.0/tubern/man/add_group_item.Rd | 4 tubern-0.5.0/tubern/man/add_groups.Rd | 15 tubern-0.5.0/tubern/man/check_api_quota.Rd |only tubern-0.5.0/tubern/man/data_transformation.Rd |only tubern-0.5.0/tubern/man/date_helpers.Rd |only tubern-0.5.0/tubern/man/delete_group.Rd | 4 tubern-0.5.0/tubern/man/delete_group_item.Rd | 8 tubern-0.5.0/tubern/man/diagnose_tubern.Rd |only tubern-0.5.0/tubern/man/error_handling.Rd |only tubern-0.5.0/tubern/man/get_audience_demographics.Rd |only tubern-0.5.0/tubern/man/get_available_dimensions.Rd |only tubern-0.5.0/tubern/man/get_available_metrics.Rd |only tubern-0.5.0/tubern/man/get_channel_overview.Rd |only tubern-0.5.0/tubern/man/get_common_date_ranges.Rd |only tubern-0.5.0/tubern/man/get_daily_performance.Rd |only tubern-0.5.0/tubern/man/get_geographic_performance.Rd |only tubern-0.5.0/tubern/man/get_report.Rd | 106 +++-- tubern-0.5.0/tubern/man/get_revenue_report.Rd |only tubern-0.5.0/tubern/man/get_top_videos.Rd |only tubern-0.5.0/tubern/man/list_group_items.Rd | 2 tubern-0.5.0/tubern/man/list_groups.Rd | 14 tubern-0.5.0/tubern/man/report_helpers.Rd |only tubern-0.5.0/tubern/man/resolve_date_range.Rd |only tubern-0.5.0/tubern/man/tubern.Rd | 2 tubern-0.5.0/tubern/man/update_group.Rd | 2 tubern-0.5.0/tubern/man/validation_helpers.Rd |only tubern-0.5.0/tubern/man/yt_export_csv.Rd |only tubern-0.5.0/tubern/man/yt_extract_summary.Rd |only tubern-0.5.0/tubern/man/yt_oauth.Rd | 46 +- tubern-0.5.0/tubern/man/yt_quick_plot.Rd |only tubern-0.5.0/tubern/man/yt_to_dataframe.Rd |only tubern-0.5.0/tubern/man/yt_to_tibble.Rd |only tubern-0.5.0/tubern/tests/testthat/__httptest__ |only tubern-0.5.0/tubern/tests/testthat/helper-tubern.R |only tubern-0.5.0/tubern/tests/testthat/test-client.R |only tubern-0.5.0/tubern/tests/testthat/test-data-transformation.R |only tubern-0.5.0/tubern/tests/testthat/test-error-handling.R |only tubern-0.5.0/tubern/tests/testthat/test-get-report.R | 97 ++++ tubern-0.5.0/tubern/tests/testthat/test-group-items.R |only tubern-0.5.0/tubern/tests/testthat/test-groups.R |only tubern-0.5.0/tubern/tests/testthat/test-pkg-style.R | 31 + tubern-0.5.0/tubern/tests/testthat/test-record-fixtures.R |only tubern-0.5.0/tubern/tests/testthat/test-reports.R |only tubern-0.5.0/tubern/tests/testthat/test-validation.R |only tubern-0.5.0/tubern/vignettes/basic_tubern.Rmd | 2 tubern-0.5.0/tubern/vignettes/tubern_examples.Rmd |only 75 files changed, 1028 insertions(+), 298 deletions(-)
Title: Empirical Testing of Surrogate Paradox Assumptions
Description: Provides functions to nonparametrically assess assumptions sufficient to prevent the surrogate paradox through hypothesis tests of stochastic dominance, monotonicity of conditional mean functions, and non-negative residual treatment effect. Details are described in: Hsiao E, Tian L, and Parast L (2026). "Avoiding the surrogate paradox: an empirical framework for assessing assumptions." Journal of Nonparametric Statistics <doi:10.1080/10485252.2025.2498609>. There are also functions to assess resilience to the surrogate paradox via calculation of the resilience probability, the resilience bound, and the resilience set. Details will be available in Hsiao E, Tian L, and Parast L, "Resilience Measures for the Surrogate Paradox" (Under Review). Lastly, there is a function to assess resilience to the surrogate paradox in the met-analytic setting, described in Hsiao E and Parast L, "A Functional-Class Meta-Analytic Framework for Quantifying Surrogate Resilience" (Under Review). A tutor [...truncated...]
Author: Emily Hsiao [aut],
Layla Parast [aut, cre]
Maintainer: Layla Parast <parast@austin.utexas.edu>
Diff between SurrogateParadoxTest versions 2.0 dated 2025-01-20 and 2.2 dated 2026-04-12
DESCRIPTION | 27 ++++++++++++++------------- MD5 | 32 ++++++++++++++++++++++++++++---- NAMESPACE | 17 ++++++++++++++++- R/RcppExports.R |only R/globals.R |only R/meta-analytic-functions.R |only R/resilience-functions.R |only data |only man/bootstrap_run_procedure_parallel.Rd |only man/calculate_p_hat.Rd |only man/dataA.Rd |only man/dataB.Rd |only man/fourier_interval.Rd |only man/fourier_resilience_set.Rd |only man/gaussian_process_interval.Rd |only man/gp_resilience_set.Rd |only man/make_basis.Rd |only man/meta_analytic_resilience.Rd |only man/nnr_test.Rd | 3 --- man/polynomial_interval.Rd |only man/polynomial_resilience_set.Rd |only man/run_procedure_pab.Rd |only man/test_assumptions.Rd | 6 ++---- src |only 24 files changed, 60 insertions(+), 25 deletions(-)
More information about SurrogateParadoxTest at CRAN
Permanent link
Title: Robust Inference in Difference-in-Differences and Event Study
Designs
Description: Provides functions to conduct robust inference in difference-in-differences and event study designs by implementing the methods developed in Rambachan & Roth (2023) <doi:10.1093/restud/rdad018>, "A More Credible Approach to Parallel Trends" [Previously titled "An Honest Approach..."]. Inference is conducted under a weaker version of the parallel trends assumption. Uniformly valid confidence sets are constructed based upon conditional confidence sets, fixed-length confidence sets and hybridized confidence sets.
Author: Ashesh Rambachan [aut, cph, cre],
Jonathan Roth [aut, cph]
Maintainer: Ashesh Rambachan <ashesh.a.rambachan@gmail.com>
Diff between HonestDiD versions 0.2.7 dated 2026-04-01 and 0.2.8 dated 2026-04-12
DESCRIPTION | 8 ++++---- MD5 | 19 ++++++++++--------- NAMESPACE | 1 + NEWS.md | 6 ++++++ R/arp-nuisance.R | 4 ++-- R/deltasd.R | 2 +- R/deltasdb.R | 2 +- R/deltasdm.R | 2 +- R/flci.R | 6 +++--- R/utilities.R | 29 ++++++++++++++++++++++++++++- tests/test_syntax.R |only 11 files changed, 57 insertions(+), 22 deletions(-)
Title: Augments 'ASReml-R' in Fitting Mixed Models and Packages
Generally in Exploring Prediction Differences
Description: Assists in automating the selection of terms to include in mixed models when
'asreml' is used to fit the models. Procedures are available for choosing models that
conform to the hierarchy or marginality principle, for fitting and choosing between
two-dimensional spatial models using correlation, natural cubic smoothing spline and
P-spline models. A history of the fitting of a sequence of models is kept in a data frame.
Also used to compute functions and contrasts of, to investigate differences between and
to plot predictions obtained using any model fitting function. The content falls into
the following natural groupings: (i) Data, (ii) Model modification functions, (iii) Model
selection and description functions, (iv) Model diagnostics and simulation functions,
(v) Prediction production and presentation functions, (vi) Response transformation
functions, (vii) Object manipulation functions, and (viii) Miscellaneous functions
(for further details see 'asremlPlus-package' in help). The [...truncated...]
Author: Chris Brien [aut, cre]
Maintainer: Chris Brien <chris.brien@adelaide.edu.au>
Diff between asremlPlus versions 4.4.55 dated 2025-11-07 and 4.4.58 dated 2026-04-12
asremlPlus-4.4.55/asremlPlus/R/alldiffs.v4.r |only asremlPlus-4.4.58/asremlPlus/DESCRIPTION | 8 asremlPlus-4.4.58/asremlPlus/MD5 | 45 +- asremlPlus-4.4.58/asremlPlus/R/LSDutilities.R | 209 +++++----- asremlPlus-4.4.58/asremlPlus/R/alldiffs.findLSD.v1.r | 120 ++--- asremlPlus-4.4.58/asremlPlus/R/alldiffs.v5.r |only asremlPlus-4.4.58/asremlPlus/R/asremlPlusUtilities.r | 3 asremlPlus-4.4.58/asremlPlus/R/reml4.v13.r | 37 + asremlPlus-4.4.58/asremlPlus/build/partial.rdb |binary asremlPlus-4.4.58/asremlPlus/build/vignette.rds |binary asremlPlus-4.4.58/asremlPlus/inst/NEWS.Rd | 15 asremlPlus-4.4.58/asremlPlus/inst/doc/LadybirdEMMs.asreml.pdf |binary asremlPlus-4.4.58/asremlPlus/inst/doc/LadybirdEMMs.lm.pdf |binary asremlPlus-4.4.58/asremlPlus/inst/doc/Wheat.analysis.pdf |binary asremlPlus-4.4.58/asremlPlus/inst/doc/Wheat.infoCriteria.pdf |binary asremlPlus-4.4.58/asremlPlus/inst/doc/WheatSpatialModels.pdf |binary asremlPlus-4.4.58/asremlPlus/inst/doc/asremlPlus-manual.pdf |binary asremlPlus-4.4.58/asremlPlus/man/LSD.frame.Rd | 13 asremlPlus-4.4.58/asremlPlus/man/addSpatialModel.asrtests.Rd | 3 asremlPlus-4.4.58/asremlPlus/man/addSpatialModelOnIC.asrtests.Rd | 3 asremlPlus-4.4.58/asremlPlus/man/asremlPlus-package.Rd | 17 asremlPlus-4.4.58/asremlPlus/man/chooseSpatialModelOnIC.asrtests.Rd | 7 asremlPlus-4.4.58/asremlPlus/man/predictPlus.asreml.Rd | 2 asremlPlus-4.4.58/asremlPlus/tests/testthat/data/diffs821DAP35.diff.rda |only asremlPlus-4.4.58/asremlPlus/tests/testthat/test42alldiffsasr.r | 140 ++++++ 25 files changed, 402 insertions(+), 220 deletions(-)
Title: Mathematical Morphology in Any Number of Dimensions
Description: Provides tools for performing mathematical morphology operations,
such as erosion and dilation, on data of arbitrary dimensionality. Can also
be used for finding connected components, resampling, filtering, smoothing
and other image processing-style operations.
Author: Jon Clayden [cre, aut]
Maintainer: Jon Clayden <code@clayden.org>
Diff between mmand versions 1.6.3 dated 2023-02-07 and 1.7.0 dated 2026-04-12
DESCRIPTION | 16 MD5 | 36 NEWS | 14 R/distance.R | 8 R/resample.R | 6 README.md | 52 - build/partial.rdb |binary configure | 1848 +++++++++++++++++++++++++++------------ configure.ac | 6 inst/tinytest/test-20-resample.R | 2 inst/tinytest/test-30-distance.R | 2 man/distanceTransform.Rd | 6 man/resample.Rd | 5 src/Distancer.cpp | 14 src/Makevars.in | 6 src/Parallel.h |only src/Resampler.cpp | 23 src/lemon/bits/array_map.h | 26 src/main.cpp | 23 tools/m4/jc_dispatch.m4 |only 20 files changed, 1436 insertions(+), 657 deletions(-)
Title: R at the Command-Line via 'r'
Description: A scripting and command-line front-end
is provided by 'r' (aka 'littler') as a lightweight binary wrapper around
the GNU R language and environment for statistical computing and graphics.
While R can be used in batch mode, the r binary adds full support for
both 'shebang'-style scripting (i.e. using a hash-mark-exclamation-path
expression as the first line in scripts) as well as command-line use in
standard Unix pipelines. In other words, r provides the R language without
the environment.
Author: Dirk Eddelbuettel [aut, cre] ,
Jeff Horner [aut] )
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between littler versions 0.3.22 dated 2026-02-04 and 0.3.23 dated 2026-04-12
littler-0.3.22/littler/inst/examples/trox.r |only littler-0.3.23/littler/ChangeLog | 29 ++++++++++++++++ littler-0.3.23/littler/DESCRIPTION | 8 ++-- littler-0.3.23/littler/MD5 | 21 +++++------ littler-0.3.23/littler/README.md | 39 +++++++++++----------- littler-0.3.23/littler/build/vignette.rds |binary littler-0.3.23/littler/configure | 18 +++++----- littler-0.3.23/littler/configure.ac | 2 - littler-0.3.23/littler/inst/NEWS.Rd | 23 +++++++++++- littler-0.3.23/littler/inst/examples/installRub.r | 11 ++++-- littler-0.3.23/littler/inst/examples/r2u.r | 8 ++-- littler-0.3.23/littler/src/littler.c | 14 +++++-- 12 files changed, 118 insertions(+), 55 deletions(-)
Title: Panel Cointegration Tests Based on Westerlund (2007)
Description: Implements a functional approximation of the four panel
cointegration tests developed by Westerlund (2007)
<doi:10.1111/j.1468-0084.2007.00477.x>. The tests are based on structural
rather than residual dynamics and allow for heterogeneity in both the
long-run cointegrating relationship and the short-run dynamics. The package
includes logic for automated lag and lead selection via AIC/BIC, Bartlett
kernel long-run variance estimation, and a bootstrap procedure to handle
cross-sectional dependence. It also includes a bootstrapping distribution
visualization function for diagnostic purposes.
Author: Bosco Hung [aut, cre]
Maintainer: Bosco Hung <bosco.hung@st-annes.ox.ac.uk>
Diff between Westerlund versions 0.1.2 dated 2026-02-07 and 0.1.3 dated 2026-04-12
Westerlund-0.1.2/Westerlund/man/plot_westerlund_bootstrap.Rd |only Westerlund-0.1.3/Westerlund/DESCRIPTION | 10 Westerlund-0.1.3/Westerlund/MD5 | 22 Westerlund-0.1.3/Westerlund/NAMESPACE | 6 Westerlund-0.1.3/Westerlund/R/Westerlund.R | 298 +++++++++-- Westerlund-0.1.3/Westerlund/inst/doc/my-vignette.R | 4 Westerlund-0.1.3/Westerlund/inst/doc/my-vignette.Rmd | 4 Westerlund-0.1.3/Westerlund/inst/doc/my-vignette.html | 46 - Westerlund-0.1.3/Westerlund/man/WesterlundPlain.Rd | 2 Westerlund-0.1.3/Westerlund/man/plot.westerlund_test.Rd |only Westerlund-0.1.3/Westerlund/man/print.westerlund_test.Rd |only Westerlund-0.1.3/Westerlund/man/summary.westerlund_test.Rd |only Westerlund-0.1.3/Westerlund/man/westerlund_test.Rd | 2 Westerlund-0.1.3/Westerlund/vignettes/my-vignette.Rmd | 4 14 files changed, 299 insertions(+), 99 deletions(-)
Title: Create Custom Plots for Viewing Genetic Association Results
Description: A collection of functions for visualizing,exploring and annotating genetic association results.Association results from multiple traits can be viewed simultaneously along with gene annotation, over the entire genome (Manhattan plot) or in the more detailed regional view.
Author: Thorhildur Juliusdottir [cph, aut, cre],
Andri Stefansson [aut],
Kyle Scott [ctb]
Maintainer: Thorhildur Juliusdottir <totajuliusd@gmail.com>
Diff between topr versions 2.0.2 dated 2024-06-19 and 2.0.3 dated 2026-04-12
topr-2.0.2/topr/man/figures |only topr-2.0.3/topr/DESCRIPTION | 20 ++++----- topr-2.0.3/topr/MD5 | 64 +++++++++++------------------ topr-2.0.3/topr/NAMESPACE | 4 + topr-2.0.3/topr/NEWS.md | 7 +++ topr-2.0.3/topr/R/dat_checks.R | 27 ++++++++---- topr-2.0.3/topr/R/foresttopr.R |only topr-2.0.3/topr/R/get_plots.R | 4 - topr-2.0.3/topr/R/globals.R | 4 + topr-2.0.3/topr/R/locuszoomplot.R | 15 ++++-- topr-2.0.3/topr/R/manhattan.R | 16 +++---- topr-2.0.3/topr/R/plot_functions.R | 25 +++++++---- topr-2.0.3/topr/R/regionplot.R | 7 +-- topr-2.0.3/topr/R/setters_and_getters.R | 26 ++++++++++- topr-2.0.3/topr/R/topr.R | 5 +- topr-2.0.3/topr/inst |only topr-2.0.3/topr/man/foresttopr.Rd |only topr-2.0.3/topr/man/get_matching_genes.Rd |only topr-2.0.3/topr/man/get_matching_snps.Rd |only topr-2.0.3/topr/man/get_topr_colors.Rd | 5 -- topr-2.0.3/topr/man/get_topr_old_colors.Rd |only topr-2.0.3/topr/man/manhattan.Rd | 6 +- topr-2.0.3/topr/man/regionplot.Rd | 7 ++- topr-2.0.3/topr/man/topr.Rd | 6 ++ 24 files changed, 151 insertions(+), 97 deletions(-)
Title: Removal of Unwanted Technical Variation from UK Biobank NMR
Metabolomics Biomarker Data
Description: A suite of utilities for working with the UK Biobank
<https://www.ukbiobank.ac.uk/> Nuclear Magnetic Resonance spectroscopy (NMR)
metabolomics data <https://biobank.ndph.ox.ac.uk/showcase/label.cgi?id=220>.
Includes functions for extracting biomarkers from decoded UK Biobank field
data, removing unwanted technical variation from biomarker concentrations,
computing an extended set of lipid, fatty acid, and cholesterol fractions,
and for re-deriving composite biomarkers and ratios after adjusting data
for unwanted biological variation. For further details on methods see
Ritchie SC et al. Sci Data (2023) <doi:10.1038/s41597-023-01949-y>.
Author: Scott C Ritchie [aut, cre]
Maintainer: Scott C Ritchie <sritchie73@gmail.com>
Diff between ukbnmr versions 3.3.1 dated 2025-11-30 and 3.3.2 dated 2026-04-12
DESCRIPTION | 11 ++++++----- MD5 | 8 ++++---- NEWS.md | 8 ++++++++ R/process_data.R | 2 +- man/ukbnmr.Rd | 2 +- 5 files changed, 20 insertions(+), 11 deletions(-)
Title: Permutation Testing Network Module Preservation Across Datasets
Description: Functions for assessing the replication/preservation of a network
module's topology across datasets through permutation testing; Ritchie et al.
(2015) <doi: 10.1016/j.cels.2016.06.012>.
Author: Scott Ritchie [aut, cre]
Maintainer: Scott Ritchie <sritchie73@gmail.com>
Diff between NetRep versions 1.2.9 dated 2025-10-23 and 1.2.10 dated 2026-04-12
ChangeLog | 8 DESCRIPTION | 11 MD5 | 26 inst/doc/NetRep.html | 300 +++++----- man/NetRep.Rd | 2 vignettes/NetRep_files/figure-html/correlation_heatmap-1.jpeg |binary vignettes/NetRep_files/figure-html/disk_matrix_dry_run-1.jpeg |binary vignettes/NetRep_files/figure-html/disk_matrix_plot-1.jpeg |binary vignettes/NetRep_files/figure-html/dry_run-1.jpeg |binary vignettes/NetRep_files/figure-html/dry_run_customised-1.jpeg |binary vignettes/NetRep_files/figure-html/mean_degree-1.jpeg |binary vignettes/NetRep_files/figure-html/mean_degree_customised-1.jpeg |binary vignettes/NetRep_files/figure-html/modules_in_discovery-1.jpeg |binary vignettes/NetRep_files/figure-html/modules_in_test-1.jpeg |binary 14 files changed, 176 insertions(+), 171 deletions(-)
Title: Embedded JavaScript and WebAssembly Engine for R
Description: An R interface to V8 <https://v8.dev>: Google's open source JavaScript
and WebAssembly engine. This package can be compiled either with V8 or NodeJS
when built as a shared library.
Author: Jeroen Ooms [aut, cre] ,
George Stagg [ctb] ,
Jan Marvin Garbuszus [ctb]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>
Diff between V8 versions 8.0.1 dated 2025-10-10 and 8.1.0 dated 2026-04-12
DESCRIPTION | 6 +++--- LICENSE | 2 +- MD5 | 22 +++++++++++----------- NEWS | 3 +++ build/partial.rdb |binary build/vignette.rds |binary configure | 17 +++++------------ inst/doc/npm.html | 6 +++--- inst/doc/v8_intro.html | 20 ++++++++++++-------- src/Makevars.in | 2 +- src/bindings.cpp | 4 ++-- tools/winlibs.R | 6 ++++-- 12 files changed, 45 insertions(+), 43 deletions(-)
Title: Estimation and Diagnostics for Many-Facet Measurement Models
Description: Fits many-facet measurement models and returns diagnostics,
reporting helpers, and reproducible analysis bundles using a native R
implementation. Supports arbitrary facet counts, rating-scale and
partial-credit parameterizations ('Andrich' (1978)
<doi:10.1007/BF02293814>; 'Masters' (1982)
<doi:10.1007/BF02296272>), marginal maximum likelihood estimation with
Gauss-Hermite quadrature and direct optimization of the marginal
log-likelihood, joint maximum likelihood estimation, plus tools for
anchor review, interaction screening, linking workflows, and
publication-oriented summaries.
Author: Ryuya Komuro [aut, cre]
Maintainer: Ryuya Komuro <ryuya.komuro.c4@tohoku.ac.jp>
Diff between mfrmr versions 0.1.4 dated 2026-03-30 and 0.1.5 dated 2026-04-12
DESCRIPTION | 24 MD5 | 328 NAMESPACE | 39 NEWS.md | 50 R/api-advanced.R | 2903 +++++ R/api-bias-collection.R | 10 R/api-dashboards.R | 5 R/api-estimation.R | 740 + R/api-export-bundles.R | 3550 ++++++ R/api-methods.R | 1899 +++ R/api-plotting-fit-family.R | 226 R/api-plotting.R | 586 + R/api-prediction.R | 810 + R/api-reference-benchmark.R | 763 + R/api-reporting-checklist.R | 639 + R/api-reports.R | 3323 ++++++ R/api-simulation-spec.R | 804 + R/api-simulation.R | 9421 +++++++++++++++++- R/api-tables.R | 562 + R/cpp11.R |only R/facets_mode_api.R | 23 R/facets_mode_methods.R | 8 R/help_compatibility_layer.R | 154 R/help_gpcm_scope.R |only R/help_linking_and_dff.R | 19 R/help_reporting_and_apa.R | 96 R/help_reports_and_tables.R | 62 R/help_visual_diagnostics.R | 315 R/help_workflow_methods.R | 277 R/mfrm_core.R | 2976 ++++- R/mfrmr-package.R | 328 R/reporting.R | 599 + R/utils-method-labels.R |only README.md | 481 build/vignette.rds |binary inst/doc/mfrmr-linking-and-dff.R | 204 inst/doc/mfrmr-linking-and-dff.html | 1158 +- inst/doc/mfrmr-mml-and-marginal-fit.R |only inst/doc/mfrmr-mml-and-marginal-fit.Rmd |only inst/doc/mfrmr-mml-and-marginal-fit.html |only inst/doc/mfrmr-reporting-and-apa.R | 184 inst/doc/mfrmr-reporting-and-apa.html | 1312 +- inst/doc/mfrmr-visual-diagnostics.R | 208 inst/doc/mfrmr-visual-diagnostics.Rmd | 64 inst/doc/mfrmr-visual-diagnostics.html | 1166 +- inst/doc/mfrmr-workflow.R | 428 inst/doc/mfrmr-workflow.Rmd | 110 inst/doc/mfrmr-workflow.html | 2203 ++-- inst/references/CODE_READING_GUIDE.md | 199 inst/references/FACETS_manual_mapping.md | 28 man/analyze_dff.Rd | 12 man/analyze_residual_pca.Rd | 2 man/apa_table.Rd | 11 man/audit_conquest_overlap.Rd |only man/audit_mfrm_anchors.Rd | 2 man/bias_interaction_report.Rd | 2 man/build_apa_outputs.Rd | 33 man/build_conquest_overlap_bundle.Rd |only man/build_linking_review.Rd |only man/build_mfrm_manifest.Rd | 11 man/build_mfrm_replay_script.Rd | 18 man/build_mfrm_sim_spec.Rd | 118 man/build_misfit_casebook.Rd |only man/build_summary_table_bundle.Rd |only man/build_visual_summaries.Rd | 30 man/build_weighting_audit.Rd |only man/category_curves_report.Rd | 4 man/category_structure_report.Rd | 7 man/compare_mfrm.Rd | 15 man/compatibility_alias_table.Rd |only man/compute_information.Rd | 58 man/data_quality_report.Rd | 2 man/describe_mfrm_data.Rd | 25 man/diagnose_mfrm.Rd | 54 man/displacement_table.Rd | 2 man/estimate_all_bias.Rd | 10 man/estimate_bias.Rd | 2 man/estimation_iteration_report.Rd | 2 man/evaluate_mfrm_design.Rd | 67 man/evaluate_mfrm_diagnostic_screening.Rd |only man/evaluate_mfrm_signal_detection.Rd | 61 man/export_mfrm_bundle.Rd | 49 man/export_summary_appendix.Rd |only man/extract_mfrm_sim_spec.Rd | 21 man/facet_quality_dashboard.Rd | 3 man/facet_statistics_report.Rd | 2 man/facets_chisq_table.Rd | 2 man/facets_output_file_bundle.Rd | 2 man/facets_parity_report.Rd | 8 man/fair_average_table.Rd | 11 man/fit_mfrm.Rd | 307 man/gpcm_capability_matrix.Rd |only man/interrater_agreement_table.Rd | 4 man/measurable_summary_table.Rd | 2 man/mfrm_threshold_profiles.Rd | 3 man/mfrmr-package.Rd | 340 man/mfrmr_compatibility_layer.Rd | 32 man/mfrmr_linking_and_dff.Rd | 17 man/mfrmr_reporting_and_apa.Rd | 96 man/mfrmr_reports_and_tables.Rd | 62 man/mfrmr_visual_diagnostics.Rd | 143 man/mfrmr_workflow_methods.Rd | 284 man/normalize_conquest_overlap_files.Rd |only man/normalize_conquest_overlap_tables.Rd |only man/plot.mfrm_bundle.Rd | 6 man/plot.mfrm_design_evaluation.Rd | 32 man/plot.mfrm_facets_run.Rd | 4 man/plot.mfrm_fit.Rd | 26 man/plot.mfrm_future_branch_active_branch.Rd |only man/plot.mfrm_signal_detection.Rd | 38 man/plot.mfrm_summary_table_bundle.Rd |only man/plot_facet_quality_dashboard.Rd | 2 man/plot_fair_average.Rd | 8 man/plot_information.Rd | 24 man/plot_marginal_fit.Rd |only man/plot_marginal_pairwise.Rd |only man/plot_qc_dashboard.Rd | 5 man/predict_mfrm_population.Rd | 57 man/predict_mfrm_units.Rd | 104 man/rating_scale_table.Rd | 12 man/recommend_mfrm_design.Rd | 29 man/reference_case_benchmark.Rd | 65 man/reporting_checklist.Rd | 49 man/run_mfrm_facets.Rd | 14 man/run_qc_pipeline.Rd | 4 man/sample_mfrm_plausible_values.Rd | 66 man/simulate_mfrm_data.Rd | 60 man/specifications_report.Rd | 2 man/subset_connectivity_report.Rd | 4 man/summary.mfrm_bias.Rd | 5 man/summary.mfrm_bundle.Rd | 14 man/summary.mfrm_data_description.Rd | 15 man/summary.mfrm_design_evaluation.Rd | 30 man/summary.mfrm_diagnostics.Rd | 25 man/summary.mfrm_facets_run.Rd | 4 man/summary.mfrm_fit.Rd | 44 man/summary.mfrm_future_branch_active_branch.Rd |only man/summary.mfrm_linking_review.Rd |only man/summary.mfrm_misfit_casebook.Rd |only man/summary.mfrm_plausible_values.Rd | 6 man/summary.mfrm_population_prediction.Rd | 27 man/summary.mfrm_reporting_checklist.Rd |only man/summary.mfrm_signal_detection.Rd | 24 man/summary.mfrm_summary_table_bundle.Rd |only man/summary.mfrm_unit_prediction.Rd | 2 man/summary.mfrm_weighting_audit.Rd |only man/unexpected_after_bias_table.Rd | 2 man/unexpected_response_table.Rd | 2 man/visual_reporting_template.Rd |only src |only tests/testthat.R | 7 tests/testthat/test-anchor-equating.R | 110 tests/testthat/test-api-coverage-gaps.R | 22 tests/testthat/test-compatibility-aliases.R |only tests/testthat/test-core-workflow.R | 38 tests/testthat/test-data-processing.R | 309 tests/testthat/test-diagnostic-screening-validation.R |only tests/testthat/test-draw-coverage.R | 34 tests/testthat/test-edge-cases.R | 4 tests/testthat/test-error-handling.R | 17 tests/testthat/test-estimation-core.R | 828 + tests/testthat/test-export-bundles.R | 2475 ++++ tests/testthat/test-facets-mode-api.R | 4 tests/testthat/test-facets-parity-report.R | 4 tests/testthat/test-gpcm-capability-matrix.R |only tests/testthat/test-information-module.R | 64 tests/testthat/test-marginal-fit-diagnostics.R |only tests/testthat/test-marginal-fit-plots.R |only tests/testthat/test-misfit-casebook.R |only tests/testthat/test-mml-cpp11-backend.R |only tests/testthat/test-namespace-contract.R | 42 tests/testthat/test-output-stability.R | 173 tests/testthat/test-parameter-recovery.R | 287 tests/testthat/test-prediction.R | 418 tests/testthat/test-reference-benchmark.R | 264 tests/testthat/test-report-functions.R | 3 tests/testthat/test-reporting-checklist.R | 133 tests/testthat/test-reporting-coverage.R | 113 tests/testthat/test-simulation-design.R | 3179 ++++++ tests/testthat/test-summary-table-bundle.R |only tests/testthat/test-visual-reporting-template.R |only tests/testthat/test-weighting-audit.R |only vignettes/mfrmr-mml-and-marginal-fit.Rmd |only vignettes/mfrmr-visual-diagnostics.Rmd | 64 vignettes/mfrmr-workflow.Rmd | 110 185 files changed, 45572 insertions(+), 5161 deletions(-)
Title: Plots for Compositional Data
Description: Provides a collection of easy-to-use functions for creating
visualizations of compositional data using 'ggplot2'. Includes support
for common plotting techniques in compositional data analysis.
Author: Marc Comas-Cufi [aut, cre]
Maintainer: Marc Comas-Cufi <mcomas@imae.udg.edu>
Diff between coda.plot versions 0.2.1 dated 2026-03-06 and 0.2.2 dated 2026-04-12
DESCRIPTION | 8 MD5 | 21 - NAMESPACE | 7 NEWS | 18 R/balance_dendrogram.R | 25 - R/ternary_diagram.R | 854 +++++++++++++++++++++++++++++++++++----------- R/zzz.R | 2 man/add_ternary_grid.Rd |only man/add_ternary_path.Rd |only man/add_ternary_pc.Rd |only man/add_ternary_points.Rd |only man/ternary_coords.Rd |only man/ternary_diagram.Rd | 34 - man/ternary_frame.Rd |only man/ternary_plot.Rd |only 15 files changed, 733 insertions(+), 236 deletions(-)
Title: Send Email Using R
Description: Package contains a simple SMTP client with minimal dependencies which
provides a portable solution for sending email, including file attachments and inline html reports,
from within R. SMTP Authentication and SSL/STARTTLS is implemented using curl.
Author: Olaf Mersmann [aut, cre] ,
Quinn Weber [ctb],
Marius Barth [ctb] ,
Are Edvardsen [ctb] ,
Alexander Bartel [ctb]
Maintainer: Olaf Mersmann <olafm@p-value.net>
Diff between sendmailR versions 1.4-0 dated 2023-01-12 and 1.4-1 dated 2026-04-12
DESCRIPTION | 17 + MD5 | 16 - R/mime_part.R | 14 + R/options.R | 2 R/sendmailR.r | 26 +- build/vignette.rds |binary inst/doc/sending-html-reports.html | 328 ++++++++++++++++++------------------- man/mime_part.character.Rd | 5 man/sendmail_options.Rd | 2 9 files changed, 213 insertions(+), 197 deletions(-)
Title: Search Algorithms and Loss Functions for Bayesian Clustering
Description: The SALSO algorithm is an efficient randomized greedy search method to find a point estimate for a random partition based on a loss function and posterior Monte Carlo samples. The algorithm is implemented for many loss functions, including the Binder loss and a generalization of the variation of information loss, both of which allow for unequal weights on the two types of clustering mistakes. Efficient implementations are also provided for Monte Carlo estimation of the posterior expected loss of a given clustering estimate. See Dahl, Johnson, Müller (2022) <doi:10.1080/10618600.2022.2069779>.
Author: David B. Dahl [aut, cre] ,
Devin J. Johnson [aut] ,
Peter Mueller [aut],
Andres Felipe Barrientos [aut],
Garritt Page [aut],
David Dunson [aut],
Authors of the dependency Rust crates [ctb]
Maintainer: David B. Dahl <dahl@stat.byu.edu>
Diff between salso versions 0.3.69 dated 2026-03-08 and 0.3.77 dated 2026-04-12
salso-0.3.69/salso/src/abort_shim.c |only salso-0.3.69/salso/src/shim.c |only salso-0.3.77/salso/DESCRIPTION | 10 salso-0.3.77/salso/LICENSE | 2 salso-0.3.77/salso/MD5 | 46 +- salso-0.3.77/salso/NEWS | 6 salso-0.3.77/salso/build/partial.rdb |binary salso-0.3.77/salso/inst/AUTHORS | 37 + salso-0.3.77/salso/src/Makevars.win.in | 12 salso-0.3.77/salso/src/r_init_shim.c |only salso-0.3.77/salso/src/rust/Cargo.lock | 382 +++++++++++++++++--- salso-0.3.77/salso/src/rust/Cargo.toml | 18 salso-0.3.77/salso/src/rust/build.rs | 12 salso-0.3.77/salso/src/rust/rbindings/Cargo.lock | 2 salso-0.3.77/salso/src/rust/rbindings/Cargo.toml | 5 salso-0.3.77/salso/src/rust/rbindings/src/lib.rs | 225 +++++------ salso-0.3.77/salso/src/rust/roxido/Cargo.lock | 6 salso-0.3.77/salso/src/rust/roxido/Cargo.toml | 5 salso-0.3.77/salso/src/rust/roxido/src/lib.rs | 130 +++--- salso-0.3.77/salso/src/rust/roxido_macro/Cargo.lock | 2 salso-0.3.77/salso/src/rust/roxido_macro/Cargo.toml | 5 salso-0.3.77/salso/src/rust/roxido_macro/src/lib.rs | 4 salso-0.3.77/salso/src/rust/src/lib.rs | 2 salso-0.3.77/salso/src/rust/vendor.tar.xz |binary salso-0.3.77/salso/src/shims.c |only salso-0.3.77/salso/tools/configure.R | 182 +++++++-- 26 files changed, 728 insertions(+), 365 deletions(-)
Title: Project Environments
Description: A dependency management toolkit for R. Using 'renv', you can create
and manage project-local R libraries, save the state of these libraries to
a 'lockfile', and later restore your library as required. Together, these
tools can help make your projects more isolated, portable, and reproducible.
Author: Kevin Ushey [aut, cre] ,
Hadley Wickham [aut] ,
Posit Software, PBC [cph, fnd]
Maintainer: Kevin Ushey <kevin@rstudio.com>
Diff between renv versions 1.2.0 dated 2026-03-25 and 1.2.1 dated 2026-04-12
renv-1.2.0/renv/inst/repos/src/contrib/renv_1.2.0.tar.gz |only renv-1.2.1/renv/DESCRIPTION | 8 renv-1.2.1/renv/MD5 | 97 +++---- renv-1.2.1/renv/NEWS.md | 72 +++++ renv-1.2.1/renv/R/available-packages.R | 22 + renv-1.2.1/renv/R/cache.R | 2 renv-1.2.1/renv/R/checkout.R | 29 +- renv-1.2.1/renv/R/cli.R | 2 renv-1.2.1/renv/R/description.R | 5 renv-1.2.1/renv/R/equip-macos.R | 2 renv-1.2.1/renv/R/graph.R | 103 ++++++-- renv-1.2.1/renv/R/id.R | 2 renv-1.2.1/renv/R/infrastructure.R | 6 renv-1.2.1/renv/R/install.R | 10 renv-1.2.1/renv/R/json-write.R | 5 renv-1.2.1/renv/R/library.R | 2 renv-1.2.1/renv/R/lockfile-diff.R | 1 renv-1.2.1/renv/R/lockfile-write.R | 4 renv-1.2.1/renv/R/paths.R | 5 renv-1.2.1/renv/R/pip.R | 4 renv-1.2.1/renv/R/r.R | 3 renv-1.2.1/renv/R/records.R | 25 +- renv-1.2.1/renv/R/remotes.R | 8 renv-1.2.1/renv/R/repos.R | 4 renv-1.2.1/renv/R/restore.R | 64 ++++- renv-1.2.1/renv/R/retrieve.R | 9 renv-1.2.1/renv/R/settings.R | 17 + renv-1.2.1/renv/R/snapshot.R | 18 + renv-1.2.1/renv/R/socket.R | 13 - renv-1.2.1/renv/R/update.R | 1 renv-1.2.1/renv/R/use.R | 105 ++++++++ renv-1.2.1/renv/R/utils.R | 40 ++- renv-1.2.1/renv/inst/repos/src/contrib/PACKAGES | 6 renv-1.2.1/renv/inst/repos/src/contrib/PACKAGES.gz |binary renv-1.2.1/renv/inst/repos/src/contrib/PACKAGES.rds |binary renv-1.2.1/renv/inst/repos/src/contrib/renv_1.2.1.tar.gz |only renv-1.2.1/renv/man/settings.Rd | 9 renv-1.2.1/renv/tests/testthat/_snaps/init.md |only renv-1.2.1/renv/tests/testthat/_snaps/install.md | 38 +++ renv-1.2.1/renv/tests/testthat/test-available-packages.R | 4 renv-1.2.1/renv/tests/testthat/test-checkout.R | 25 ++ renv-1.2.1/renv/tests/testthat/test-defer.R | 46 +++ renv-1.2.1/renv/tests/testthat/test-graph.R | 184 +++++++++++++++ renv-1.2.1/renv/tests/testthat/test-init.R | 6 renv-1.2.1/renv/tests/testthat/test-install.R | 18 + renv-1.2.1/renv/tests/testthat/test-lockfile.R | 20 + renv-1.2.1/renv/tests/testthat/test-paths.R | 34 ++ renv-1.2.1/renv/tests/testthat/test-records.R | 40 +++ renv-1.2.1/renv/tests/testthat/test-restore.R | 114 +++++++++ renv-1.2.1/renv/tests/testthat/test-retrieve.R | 15 + renv-1.2.1/renv/tests/testthat/test-use.R | 65 +++++ 51 files changed, 1177 insertions(+), 135 deletions(-)
Title: Mixed-Effects Models Enhancing Functions
Description: Special functions that enhance other mixed effect model packages by creating overlayed, reduced rank, and reduced model matrices together with multiple data sets to practice the use of these models. For more details see Covarrubias-Pazaran (2016) <doi:10.1371/journal.pone.0156744>.
Author: Giovanny Covarrubias-Pazaran [aut, cre]
Maintainer: Giovanny Covarrubias-Pazaran <cova_ruber@live.com.mx>
Diff between enhancer versions 1.1.0 dated 2025-11-17 and 1.1.1 dated 2026-04-12
DESCRIPTION | 10 +++++----- MD5 | 4 ++-- man/redmm.Rd | 6 ++++++ 3 files changed, 13 insertions(+), 7 deletions(-)
Title: Multi-Format Archive and Compression Support
Description: Bindings to 'libarchive' <http://www.libarchive.org> the
Multi-format archive and compression library. Offers R connections and
direct extraction for many archive formats including 'tar', 'ZIP',
'7-zip', 'RAR', 'CAB' and compression formats including 'gzip',
'bzip2', 'compress', 'lzma' and 'xz'.
Author: Jim Hester [aut] ,
Gabor Csardi [aut, cre],
Ondrej Holy [cph] ,
RStudio [cph, fnd]
Maintainer: Gabor Csardi <csardi.gabor@gmail.com>
Diff between archive versions 1.1.12.1 dated 2025-12-24 and 1.1.13 dated 2026-04-12
DESCRIPTION | 9 ++-- MD5 | 30 ++++++++-------- NEWS.md | 4 ++ src/Makevars.in | 2 - src/cpp11/include/cpp11/R.hpp | 30 +++++++++++++++- src/cpp11/include/cpp11/altrep.hpp | 42 +--------------------- src/cpp11/include/cpp11/data_frame.hpp | 58 ++++++++++++++----------------- src/cpp11/include/cpp11/declarations.hpp | 11 ++--- src/cpp11/include/cpp11/environment.hpp | 14 ------- src/cpp11/include/cpp11/function.hpp | 21 +++++++---- src/cpp11/include/cpp11/list.hpp | 8 ++-- src/cpp11/include/cpp11/named_arg.hpp | 2 - src/cpp11/include/cpp11/protect.hpp | 25 +++---------- src/cpp11/include/cpp11/r_vector.hpp | 17 +++------ src/cpp11/include/cpp11/sexp.hpp | 5 +- src/cpp11/include/fmt/format.h | 4 +- 16 files changed, 125 insertions(+), 157 deletions(-)
Title: Augmented Inverse Probability Weighting
Description: The 'AIPW' package implements the augmented inverse probability weighting, a doubly robust estimator, for average causal effect estimation with user-defined stacked machine learning algorithms. To cite the 'AIPW' package, please use: "Yongqi Zhong, Edward H. Kennedy, Lisa M. Bodnar, Ashley I. Naimi (2021). AIPW: An R Package for Augmented Inverse Probability Weighted Estimation of Average Causal Effects. American Journal of Epidemiology. <doi:10.1093/aje/kwab207>". Visit: <https://yqzhong7.github.io/AIPW/> for more information.
Author: Yongqi Zhong [aut, cre] ,
Ashley Naimi [aut] ,
Gabriel Conzuelo [ctb],
Edward Kennedy [ctb]
Maintainer: Yongqi Zhong <yq.zhong7@gmail.com>
Diff between AIPW versions 0.6.9.2 dated 2025-04-05 and 0.6.9.3 dated 2026-04-12
DESCRIPTION | 13 +++++++------ MD5 | 8 ++++---- NEWS.md | 14 ++++++++++---- inst/doc/AIPW.html | 9 ++++----- inst/doc/Repated_Crossfitting.html | 7 +++---- 5 files changed, 28 insertions(+), 23 deletions(-)
Title: Partial Eta-Squared for Crossed, Nested, and Mixed Linear Mixed
Models
Description: Computes partial eta-squared effect sizes for fixed effects in
linear mixed models fitted with the 'lme4' package. Supports crossed,
nested, and mixed (crossed-and-nested) random effects structures with any
number of grouping factors. Mixed designs handle cases where grouping
factors are simultaneously crossed with some variables and nested within
others (e.g., photos nested within models, but both crossed with
participants). Random slope variances are translated to the outcome scale
using a variance decomposition approach, correctly accounting for predictor
scaling and interaction terms. Both general and operative effect sizes are
provided. Methods are based on Correll, Mellinger, McClelland, and Judd
(2020) <doi:10.1016/j.tics.2019.12.009>, Correll, Mellinger, and Pedersen
(2022) <doi:10.3758/s13428-021-01687-2>, and Rights and Sterba (2019)
<doi:10.1037/met0000184>.
Author: Brandon Cohen [aut, cre] ,
Joshua Correll [aut, ths]
Maintainer: Brandon Cohen <brandon.cohen-1@colorado.edu>
Diff between pecanr versions 0.1.2 dated 2026-03-17 and 0.2.0 dated 2026-04-11
DESCRIPTION | 28 + MD5 | 16 - NEWS.md | 34 ++ R/eta2p.R | 774 +++++++++++++++++++++++++++++++++++++------------- README.md | 32 +- inst/WORDLIST | 1 man/batch_eta2p.Rd | 48 ++- man/eta2p.Rd | 175 ++++++++--- man/pecanr-package.Rd | 4 9 files changed, 820 insertions(+), 292 deletions(-)
Title: Goodness of Fit Tests Based on Empirical Distribution Functions
Description: Routines that allow the user to run goodness of fit tests based on empirical distribution functions for formal model evaluation in a general likelihood model. In addition, functions are provided to test if a sample follows Normal or Gamma distributions, validate the normality assumptions in a linear model, and examine the appropriateness of a Gamma distribution in generalized linear models with various link functions. Michael Arthur Stephens (1976) <http://www.jstor.org/stable/2958206>.
Author: Richard Lockhart [aut],
Payman Nickchi [aut, cre]
Maintainer: Payman Nickchi <payman.nickchi@gmail.com>
Diff between gofedf versions 1.0.0 dated 2025-05-29 and 1.1.0 dated 2026-04-11
DESCRIPTION | 8 - MD5 | 36 +++---- R/testExponential.R | 95 +++++++++++++++++--- R/testGLMGamma.R | 151 ++++++++++++++++++++++++------- R/testGamma.R | 137 +++++++++++++++++++++++++--- R/testLMNormal.R | 127 +++++++++++++++++++++++--- R/testNormal.R | 102 +++++++++++++++++++-- R/testYourModel.R | 199 ++++++++++++++++++++++++++++++++++++------ R/utils_gof.R | 162 +++++++++++++++++++++++++++++++--- README.md | 103 ++++++++++----------- build/vignette.rds |binary inst/doc/gofedf-vignette.R | 6 - inst/doc/gofedf-vignette.html | 21 ++-- man/testExponential.Rd | 26 ++++- man/testGLMGamma.Rd | 30 +++++- man/testGamma.Rd | 32 ++++++ man/testLMNormal.Rd | 25 ++++- man/testNormal.Rd | 32 ++++++ man/testYourModel.Rd | 29 +++++- 19 files changed, 1085 insertions(+), 236 deletions(-)
Title: 'a la Carte' on Text (ConText) Embedding Regression
Description: A fast, flexible and transparent framework to estimate context-specific word and short document embeddings using the 'a la carte'
embeddings approach developed by Khodak et al. (2018) <doi:10.48550/arXiv.1805.05388> and evaluate hypotheses about covariate effects on embeddings using
the regression framework developed by Rodriguez et al. (2021)<doi:10.1017/S0003055422001228>. New version of the package applies a new estimator to measure the distance between word embeddings as described in Green et al. (2025) <doi:10.1017/pan.2024.22>.
Author: Pedro L. Rodriguez [aut, cph] ,
Arthur Spirling [aut] ,
Brandon Stewart [aut] ,
Christopher Barrie [ctb] ,
Sofia Avila [cre, aut]
Maintainer: Sofia Avila <sofiaavila@princeton.edu>
Diff between conText versions 3.0.0 dated 2025-09-03 and 3.0.1 dated 2026-04-11
DESCRIPTION | 8 +- MD5 | 14 +-- R/conText.R | 25 ++++-- build/partial.rdb |binary build/vignette.rds |binary inst/doc/quickstart.Rmd | 14 ++- inst/doc/quickstart.html | 185 ++++++++++++++++++----------------------------- vignettes/quickstart.Rmd | 14 ++- 8 files changed, 115 insertions(+), 145 deletions(-)
Title: Leakage-Safe Modeling and Auditing for Genomic and Clinical Data
Description: Prevents and detects information leakage in biomedical machine learning.
Provides leakage-resistant split policies (subject-grouped, batch-blocked, study leave-out, time-ordered),
guarded preprocessing (train-only imputation, normalization, filtering, feature selection),
cross-validated fitting with common learners, permutation-gap auditing, batch and fold association tests,
and duplicate detection.
Author: Selcuk Korkmaz [aut, cre]
Maintainer: Selcuk Korkmaz <selcukorkmaz@gmail.com>
Diff between bioLeak versions 0.3.5 dated 2026-03-26 and 0.3.6 dated 2026-04-11
DESCRIPTION | 6 - MD5 | 26 ++-- R/audit.R | 55 ++++------ R/ci_delta.R | 4 R/delta_lsi.R | 12 +- R/guards.R | 2 R/permute_labels.R | 14 +- R/simulate_suite.R | 1 R/time_series_blocks.R | 1 R/tune_resample.R | 1 R/utils_metrics.R | 3 R/utils_se.R | 2 build/vignette.rds |binary inst/doc/bioLeak-intro.html | 238 +++++++++++++++++++++----------------------- 14 files changed, 186 insertions(+), 179 deletions(-)
Title: Access 'Federal Reserve Economic Data'
Description: Provides clean, tidy access to economic data from the 'Federal
Reserve Economic Data' ('FRED') API <https://fred.stlouisfed.org/docs/api/fred/>.
'FRED' is maintained by the 'Federal Reserve Bank of St. Louis' and contains over
800,000 time series from 118 sources covering GDP, employment, inflation,
interest rates, trade, and more. Dedicated functions fetch series observations,
search for series, browse categories, releases, and tags, and retrieve series
metadata. Multiple series can be fetched in a single call, in long or wide
format. Server-side unit transformations (percent change, log, etc.) and
frequency aggregation are supported, with readable transform aliases such as
'yoy_pct' and 'log_diff'. Real-time and vintage helpers (built on 'ALFRED')
return a series as it appeared on a given date, the first-release version,
every revision, or a panel of selected vintages. Data is cached locally for
subsequent calls. This product uses the 'FRED' API but is not endorsed or
certified [...truncated...]
Author: Charles Coverdale [aut, cre]
Maintainer: Charles Coverdale <charlesfcoverdale@gmail.com>
Diff between fred versions 0.1.2 dated 2026-03-19 and 0.2.0 dated 2026-04-11
DESCRIPTION | 19 +-- MD5 | 40 ++++-- NAMESPACE | 6 NEWS.md | 32 +++++ R/auth.R | 4 R/cache.R | 79 ++++++++++++ R/class.R |only R/format.R |only R/releases.R | 4 R/series.R | 252 ++++++++++++++++++++++++++++------------- R/vintages.R |only inst/WORDLIST |only man/clear_cache.Rd | 1 man/fred-package.Rd | 2 man/fred_all_vintages.Rd |only man/fred_as_of.Rd |only man/fred_cache_info.Rd |only man/fred_first_release.Rd |only man/fred_get_key.Rd | 1 man/fred_real_time_panel.Rd |only man/fred_request.Rd | 1 man/fred_series.Rd | 53 +++++--- man/fred_set_key.Rd | 5 man/print.fred_tbl.Rd |only tests/testthat/test-cache.R | 26 ++++ tests/testthat/test-format.R |only tests/testthat/test-vintages.R |only 27 files changed, 397 insertions(+), 128 deletions(-)
Title: Convenient Access to NYC Open Data API Endpoints
Description: Provides a unified set of helper functions to access datasets
from the NYC Open Data platform <https://opendata.cityofnewyork.us/>.
Functions return results as tidy tibbles and support optional filtering,
sorting, and row limits via the Socrata API. The package includes endpoints
for 311 service requests, DOB job applications, juvenile justice metrics,
school safety, environmental data, event permitting, and additional citywide datasets.
Author: Christian Martinez [aut, cre] ,
Crystal Adote [ctb] ,
Jonah Dratfield [ctb] ,
Joyce Escatel-Flores [ctb] ,
Rob Hutto [ctb] ,
Isley Jean-Pierre [ctb] ,
Shannon Joyce [ctb] ,
Laura Rose-Werner [ctb] ,
Emma Tupone [ctb] ,
Xinru Wang [ctb]
Maintainer: Christian Martinez <c.martinez0@outlook.com>
Diff between nycOpenData versions 0.1.6 dated 2026-02-14 and 0.2.1 dated 2026-04-11
nycOpenData-0.1.6/nycOpenData/R/nyc_311.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_311_2010_2019.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_borough_community_report.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_borough_population.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_cause_of_death.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_city_record.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_civil_service_list.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_daily_attendance_2018_2019.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_detention_admissions.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_dhs_daily_report.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_dob_job_applications.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_dob_permit_issuance.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_domestic_violence_annual_report.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_dop_juvenile_cases.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_dop_juvenile_rearrest_rate.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_events_sealevel.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_film_permits.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_for_hire_vehicles.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_ha_violations.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_homeless_drop_in_centers.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_homeless_population_by_year.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_ll97_shelter_pets.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_locallaw18_payreport.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_medallion_drivers_active.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_medallion_drivers_authorized.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_motor_vehicle_collisions_crashes.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_museum_locations.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_nypd_hate_crimes.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_open_parking_camera_violations.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_period_attendance_reporting.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_permit_events_historic.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_pets_in_shelters.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_restaurant_inspection_results.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_runaway_and_homeless_youth_daily_census.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_school_discharge.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_school_discharge_report_2013_2015.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_school_discharge_report_2015_2018.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_shooting_incidents.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_slash_stab.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_street_hail_livery_active.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_tlc_new_driver_app_status.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_tree_census_2015.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_urban_park_animal_condition.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_violent_disruptive_school_incidents.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_wetlands.R |only nycOpenData-0.1.6/nycOpenData/man/nyc_311.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_311_2010_2019.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_borough_community_report.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_borough_population.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_cause_of_death.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_city_record.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_civil_service_list.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_daily_attendance_2018_2019.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_detention_admissions.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_dhs_daily_report.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_dob_job_applications.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_dob_permit_issuance.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_domestic_violence_annual_report.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_dop_juvenile_cases.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_dop_juvenile_rearrest_rate.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_events_sealevel.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_film_permits.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_for_hire_vehicles.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_ha_violations.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_homeless_drop_in_centers.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_homeless_population_by_year.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_locallaw18_payreport.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_locallaw97_shelter_pets.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_medallion_drivers_active.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_medallion_drivers_authorized.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_motor_vehicle_collisions_crashes.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_museum_locations.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_nypd_hate_crimes.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_open_parking_camera_violations.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_period_attendance_reporting.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_permit_events_historic.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_pets_in_shelters.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_restaurant_inspection_results.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_runaway_and_homeless_youth_daily_census.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_school_discharge.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_school_discharge_report_2013_2015.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_school_discharge_report_2015_2018.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_shooting_incidents.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_slash_stab.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_street_hail_livery_active.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_tlc_new_driver_app_status.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_tree_census_2015.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_urban_park_animal_condition.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_violent_disruptive_school_incidents.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_wetlands.Rd |only nycOpenData-0.1.6/nycOpenData/tests/testthat/fixtures |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_311.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_311_2010_2019.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_borough_community_report.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_borough_population.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_cause_of_death.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_city_record.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_civil_service_list.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_daily_attendance_2018_2019.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_detention_admissions.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_dhs_daily_report.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_dob_job_applications.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_dob_permit_issuance.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_domestic_violence_annual_report.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_dop_juvenile_cases.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_dop_juvenile_rearrest_rate.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_events_sealevel.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_film_permits_test.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_for_hire_vehicles.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_ha_violations.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_homeless_drop_in_centers.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_homeless_population_by_year.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_locallaw18_payreport.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_locallaw97_shelter_pets.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_medallion_drivers_active.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_medallion_drivers_authorized.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_motor_vehicle_collisions_crashes.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_museum_locations.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_nypd_hate_crimes.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_open_parking_camera_violations.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_period_attendance_reporting.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_permit_events_historic.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_pets_in_shelters.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_restaurant_inspection_results.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_runaway_and_homeless_youth_daily_census.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_school_discharge.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_school_discharge_report_2013_2015.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_school_discharge_report_2015_2018.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_shooting_incidents.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_slash_stab.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_street_hail_livery_active.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_tlc_new_driver_app_status.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_tree_census_2015.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_urban_park_animal_condition_test.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_violent_disruptive_school_incidents.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_wetlands.R |only nycOpenData-0.2.1/nycOpenData/DESCRIPTION | 13 nycOpenData-0.2.1/nycOpenData/MD5 | 277 --- nycOpenData-0.2.1/nycOpenData/NAMESPACE | 7 nycOpenData-0.2.1/nycOpenData/NEWS.md | 48 nycOpenData-0.2.1/nycOpenData/R/nyc_any_dataset.R | 22 nycOpenData-0.2.1/nycOpenData/R/nyc_list_datasets.R |only nycOpenData-0.2.1/nycOpenData/R/nyc_pull_dataset.R |only nycOpenData-0.2.1/nycOpenData/R/utils_request.R | 271 +++ nycOpenData-0.2.1/nycOpenData/README.md | 89 - nycOpenData-0.2.1/nycOpenData/inst/CITATION |only nycOpenData-0.2.1/nycOpenData/inst/doc/Analyzing-the-Local-Law-97-of-2021-Pets-in-Shelter-Report.R | 47 nycOpenData-0.2.1/nycOpenData/inst/doc/Analyzing-the-Local-Law-97-of-2021-Pets-in-Shelter-Report.Rmd | 65 nycOpenData-0.2.1/nycOpenData/inst/doc/Analyzing-the-Local-Law-97-of-2021-Pets-in-Shelter-Report.html | 829 ++++------ nycOpenData-0.2.1/nycOpenData/inst/doc/Using-Local-Law18-Pay-Report.R | 35 nycOpenData-0.2.1/nycOpenData/inst/doc/Using-Local-Law18-Pay-Report.Rmd | 47 nycOpenData-0.2.1/nycOpenData/inst/doc/Using-Local-Law18-Pay-Report.html | 229 +- nycOpenData-0.2.1/nycOpenData/inst/doc/analyzing-nyc-borough-population.R | 33 nycOpenData-0.2.1/nycOpenData/inst/doc/analyzing-nyc-borough-population.Rmd | 57 nycOpenData-0.2.1/nycOpenData/inst/doc/analyzing-nyc-borough-population.html | 243 +- nycOpenData-0.2.1/nycOpenData/inst/doc/analyzing-nyc-shooting-incidents.R | 9 nycOpenData-0.2.1/nycOpenData/inst/doc/analyzing-nyc-shooting-incidents.Rmd | 19 nycOpenData-0.2.1/nycOpenData/inst/doc/analyzing-nyc-shooting-incidents.html | 70 nycOpenData-0.2.1/nycOpenData/inst/doc/analyzing-nyc_events_sealevel.R | 32 nycOpenData-0.2.1/nycOpenData/inst/doc/analyzing-nyc_events_sealevel.Rmd | 61 nycOpenData-0.2.1/nycOpenData/inst/doc/analyzing-nyc_events_sealevel.html | 158 + nycOpenData-0.2.1/nycOpenData/inst/doc/analyzing-nyc_wetlands.R | 27 nycOpenData-0.2.1/nycOpenData/inst/doc/analyzing-nyc_wetlands.Rmd | 31 nycOpenData-0.2.1/nycOpenData/inst/doc/analyzing-nyc_wetlands.html | 119 - nycOpenData-0.2.1/nycOpenData/inst/doc/getting-started.R | 55 nycOpenData-0.2.1/nycOpenData/inst/doc/getting-started.Rmd | 127 + nycOpenData-0.2.1/nycOpenData/inst/doc/getting-started.html | 341 ++-- nycOpenData-0.2.1/nycOpenData/inst/doc/investigating-inmate-incidents.R | 45 nycOpenData-0.2.1/nycOpenData/inst/doc/investigating-inmate-incidents.Rmd | 69 nycOpenData-0.2.1/nycOpenData/inst/doc/investigating-inmate-incidents.html | 177 -- nycOpenData-0.2.1/nycOpenData/inst/doc/nyc_ha_violations.R | 31 nycOpenData-0.2.1/nycOpenData/inst/doc/nyc_ha_violations.Rmd | 50 nycOpenData-0.2.1/nycOpenData/inst/doc/nyc_ha_violations.html | 109 - nycOpenData-0.2.1/nycOpenData/man/nyc_any_dataset.Rd | 12 nycOpenData-0.2.1/nycOpenData/man/nyc_list_datasets.Rd |only nycOpenData-0.2.1/nycOpenData/man/nyc_pull_dataset.Rd |only nycOpenData-0.2.1/nycOpenData/tests/testthat/helper-vcr.R | 27 nycOpenData-0.2.1/nycOpenData/tests/testthat/test-nyc_any_dataset.R |only nycOpenData-0.2.1/nycOpenData/tests/testthat/test-nyc_catalog_and_pull_dataset.R |only nycOpenData-0.2.1/nycOpenData/tests/testthat/test-utils_request.R |only nycOpenData-0.2.1/nycOpenData/tests/testthat/test-validate.R |only nycOpenData-0.2.1/nycOpenData/vignettes/Analyzing-the-Local-Law-97-of-2021-Pets-in-Shelter-Report.Rmd | 65 nycOpenData-0.2.1/nycOpenData/vignettes/Using-Local-Law18-Pay-Report.Rmd | 47 nycOpenData-0.2.1/nycOpenData/vignettes/analyzing-nyc-borough-population.Rmd | 57 nycOpenData-0.2.1/nycOpenData/vignettes/analyzing-nyc-shooting-incidents.Rmd | 19 nycOpenData-0.2.1/nycOpenData/vignettes/analyzing-nyc_events_sealevel.Rmd | 61 nycOpenData-0.2.1/nycOpenData/vignettes/analyzing-nyc_wetlands.Rmd | 31 nycOpenData-0.2.1/nycOpenData/vignettes/getting-started.Rmd | 127 + nycOpenData-0.2.1/nycOpenData/vignettes/investigating-inmate-incidents.Rmd | 69 nycOpenData-0.2.1/nycOpenData/vignettes/nyc_ha_violations.Rmd | 50 190 files changed, 2476 insertions(+), 1931 deletions(-)
Title: Animated Glass-Style Tabs and Multi-Select Filter for 'Shiny'
Description: Tools for creating animated glassmorphism-style tab
navigation and multi-select dropdown filters in 'shiny' applications.
The package provides a tab navigation component and a searchable
multi-select widget with multiple checkbox indicator styles,
select-all controls, and customizable colour themes. The widgets are
compatible with standard 'shiny' layouts and 'bs4Dash' dashboards.
Author: George Arthur [aut, cre]
Maintainer: George Arthur <prigasgenthian48@gmail.com>
Diff between glasstabs versions 0.1.1 dated 2026-03-13 and 0.2.1 dated 2026-04-11
DESCRIPTION | 6 LICENSE | 4 MD5 | 74 +- NAMESPACE | 35 NEWS.md | 54 + R/dependencies.R | 2 R/glassSelect.R | 19 R/glass_multiselect.R | 12 R/glass_tabs.R | 211 +++++ README.md | 59 + build/vignette.rds |binary inst/WORDLIST | 8 inst/doc/cheatsheet.R |only inst/doc/cheatsheet.Rmd |only inst/doc/cheatsheet.html |only inst/doc/getting-started.html | 5 inst/doc/glassSelect.html | 5 inst/doc/multiselect.html | 5 inst/doc/tabs.Rmd | 392 +++++------ inst/doc/tabs.html | 5 inst/examples/basic/testing_js_select.R |only inst/examples/dashboard |only inst/examples/smoke-test |only inst/www/glass.css | 97 ++ inst/www/glass.js | 1139 ++++++++++++++++++++++---------- man/appendGlassTab.Rd |only man/glassMultiSelect.Rd | 182 ++--- man/glassMultiSelectValue.Rd | 90 +- man/glassSelectValue.Rd | 82 +- man/glassTabPanel.Rd | 64 - man/glassTabsServer.Rd | 70 - man/glassTabsUI.Rd | 68 - man/showGlassTab.Rd |only man/updateGlassMultiSelect.Rd | 88 +- man/updateGlassTabsUI.Rd |only man/useGlassTabs.Rd | 64 - tests/testthat.R | 24 tests/testthat/test-dependencies.R | 5 tests/testthat/test-glassselect.R | 16 tests/testthat/test-multiselect.R | 22 tests/testthat/test-tabs.R | 189 +++++ vignettes/cheatsheet.Rmd |only vignettes/tabs.Rmd | 392 +++++------ 43 files changed, 2291 insertions(+), 1197 deletions(-)
Title: Fast and Efficient Processing of PAM Data
Description: Processing Chlorophyll Fluorescence & P700 Absorbance data. Four models are provided for the regression of Pi curves, which can be compared with each other in order to select the most suitable model for the data set. Control plots ensure the successful verification of each regression. Bundled output of alpha, ETRmax, Ik etc. enables fast and reliable further processing of the data.
Author: Julien Boehm [cre, aut] ,
Philipp Schrag [aut]
Maintainer: Julien Boehm <julien.boehm@uni-rostock.de>
Diff between pam versions 2.1.0 dated 2026-04-11 and 2.1.1 dated 2026-04-11
DESCRIPTION | 6 +++--- MD5 | 6 +++--- inst/CITATION | 2 +- tests/testthat/helper-os-detection.R | 2 +- 4 files changed, 8 insertions(+), 8 deletions(-)
Title: Functional Utilities for Data Processing
Description: Covers several areas of data processing: batch-splitting, reading and writing of large
data files, data tiling, one-hot encoding and decoding of data tiles, stratified proportional
(random or probabilistic) data sampling, data normalization and thresholding, substring location
and commonalities inside strings and location and tabulation of amino acids, modifications or
associated monoisotopic masses inside modified peptides. The extractor utility implements code from
'Matrix.utils', Varrichio C (2020), <https://cran.r-project.org/package=Matrix.utils>.
Author: Dragos Bandur [aut, cre]
Maintainer: Dragos Bandur <dbandur@sympatico.ca>
Diff between akin versions 0.1.4 dated 2026-04-10 and 0.2.0 dated 2026-04-11
DESCRIPTION | 8 +-- MD5 | 48 +++++++++++----------- NEWS.md | 6 ++ R/akin-package.R | 17 +++---- R/common.R | 108 ++++++++++++++++++++++++++++++-------------------- R/findLoc.R | 4 - R/getEncodedVar.R | 37 ++++++++--------- R/modPep.R | 8 +-- R/normalizer.R | 14 ++---- R/oneHotEncoder.R | 22 +++++----- R/seqRead.R | 25 +++++------ R/stratified_sample.R | 45 ++++++++++---------- R/tileD.R | 10 ++-- R/tileHot.R | 8 +-- R/utils.R | 17 +------ man/akin-package.Rd | 17 +++---- man/common.Rd | 63 ++++++++++++++++++----------- man/getEV.Rd | 31 ++++++-------- man/locateMod.Rd | 4 - man/oneHot.Rd | 7 +-- man/score.Rd | 14 ++---- man/splitH.Rd | 13 ++---- man/stratify.Rd | 37 ++++++++--------- man/tileData.Rd | 2 man/tileHot.Rd | 4 - 25 files changed, 297 insertions(+), 272 deletions(-)
Title: Self-Similarity Test for Normality
Description: Implements the Self-Similarity Test for Normality (SSTN), a new
statistical test designed to assess whether a given sample originates from
a normal distribution. The method exploits the self-similarity property of
the normal characteristic function by iteratively transforming and comparing
standardized empirical characteristic functions. The null distribution of
the test statistic is obtained via Monte Carlo simulation. Details of the
methodology are described in Anarat and Schwender (2026),
"A test for normality based on self-similarity", <doi:10.48550/arXiv.2604.03810>.
Author: Akin Anarat [aut, cre]
Maintainer: Akin Anarat <akin.anarat@hhu.de>
Diff between sstn versions 1.0.0 dated 2025-09-16 and 1.0.1 dated 2026-04-11
DESCRIPTION | 23 +++--- MD5 | 25 ++++-- NAMESPACE | 2 NEWS.md |only R/asymptotic_calibration.R |only R/calibration_data.R |only R/compute_statistics.R |only R/sstn.R | 141 ++++++++++++++----------------------- R/sysdata.rda |only R/utils.R |only build/vignette.rds |binary inst/WORDLIST | 2 inst/doc/Introduction_to_SSTN.Rmd | 15 +-- inst/doc/Introduction_to_SSTN.html | 38 +++------ man/calibration_data.Rd |only man/sstn.Rd | 52 +++---------- vignettes/Introduction_to_SSTN.Rmd | 15 +-- 17 files changed, 126 insertions(+), 187 deletions(-)
Title: Descriptive, Reliability, and Inferential Tables for
Psychometric Scales and Demographic Data
Description: Provides functions to format and summarise already computed outputs from commonly used statistical and psychometric functions into compact, single-row tables and simple graphs, with utilities to export results to CSV, Word, and Excel formats. The package does not implement new statistical methods or estimation procedures; instead, it organises and presents results obtained from existing functions such as psych::describe(), psych::alpha(), stats::t.test(), and gtsummary::tbl_summary() to streamline reporting workflows in clinical and psychological research.
Author: Darshankumar Dharaiya [aut, cre]
Maintainer: Darshankumar Dharaiya <dharaiya.darshan@gmail.com>
Diff between scaledescr versions 0.2.3 dated 2026-03-21 and 0.2.4 dated 2026-04-11
DESCRIPTION | 8 ++-- MD5 | 16 ++++---- NAMESPACE | 15 ++++++++ NEWS.md | 10 +++++ R/make_alpha_table.R | 55 +++++++++++++++-------------- R/make_dataframe_to_output.R | 75 +++++++++++++++++++++++++++++++++------- inst/CITATION | 2 - man/make_alpha_table.Rd | 23 ++++-------- man/make_dataframe_to_output.Rd | 8 +++- 9 files changed, 145 insertions(+), 67 deletions(-)
Title: Tools for Creating Tuning Parameter Values
Description: Many models contain tuning parameters (i.e. parameters that
cannot be directly estimated from the data). These tools can be used
to define objects for creating, simulating, or validating values for
such parameters.
Author: Max Kuhn [aut],
Hannah Frick [aut, cre],
Posit Software, PBC [cph, fnd]
Maintainer: Hannah Frick <hannah@posit.co>
Diff between dials versions 1.4.2 dated 2025-09-04 and 1.4.3 dated 2026-04-11
DESCRIPTION | 8 MD5 | 96 ++++----- NAMESPACE | 14 + NEWS.md | 23 ++ R/aaa_ranges.R | 40 ++- R/aaa_unknown.R | 16 + R/aaa_values.R | 27 +- R/constructors.R | 6 R/dials-package.R | 2 R/encode_unit.R | 13 - R/finalize.R | 30 ++ R/grids.R | 155 +++++++++++++-- R/misc.R | 236 +++++++++++++++++++++-- R/param_ordinal_link.R |only R/param_schedulers.R | 2 R/param_tab_pfn.R |only R/parameters.R | 101 ++++----- R/space_filling.R | 120 +++++++++-- README.md | 2 build/vignette.rds |binary inst/doc/dials.Rmd | 2 inst/doc/dials.html | 2 man/dials-package.Rd | 2 man/finalize.Rd | 2 man/grid_regular.Rd | 6 man/grid_space_filling.Rd | 3 man/ordinal_link.Rd |only man/parameters.Rd | 18 + man/scheduler-param.Rd | 4 man/tab-pfn-param.Rd |only tests/testthat/_snaps/aaa_ranges.md | 34 +++ tests/testthat/_snaps/aaa_unknown.md | 34 +-- tests/testthat/_snaps/aaa_values.md | 99 +++++++++ tests/testthat/_snaps/constructors.md | 43 +++- tests/testthat/_snaps/encode_unit.md | 36 ++- tests/testthat/_snaps/finalize.md | 68 ++++++ tests/testthat/_snaps/grids.md | 334 ++++++++++++++++++++++++++++++++- tests/testthat/_snaps/misc.md | 208 +++++++++++++++++++- tests/testthat/_snaps/parameters.md | 40 +++ tests/testthat/_snaps/space_filling.md | 178 +++++++++++++++++ tests/testthat/test-aaa_ranges.R | 13 + tests/testthat/test-aaa_values.R | 26 ++ tests/testthat/test-constructors.R | 29 ++ tests/testthat/test-encode_unit.R | 14 + tests/testthat/test-finalize.R | 15 + tests/testthat/test-grids.R | 117 ++++++++++- tests/testthat/test-misc.R | 89 ++++++++ tests/testthat/test-parameters.R | 22 ++ tests/testthat/test-params.R | 80 +++++-- tests/testthat/test-space_filling.R | 84 ++++++++ vignettes/dials.Rmd | 2 51 files changed, 2163 insertions(+), 332 deletions(-)
Title: Access Geographic Data
Description: Functions for downloading of geographic data for use in spatial analysis and mapping. The package facilitates access to climate, crops, elevation, land use, soil, species occurrence, accessibility, administrative boundaries and other data.
Author: Robert J. Hijmans [cre, aut] ,
Marcia Barbosa [ctb] ,
Aniruddha Ghosh [ctb],
Alex Mandel [ctb]
Maintainer: Robert J. Hijmans <r.hijmans@gmail.com>
Diff between geodata versions 0.6-6 dated 2025-09-29 and 0.6-9 dated 2026-04-11
DESCRIPTION | 9 MD5 | 38 +- R/download.R | 2 R/gadm.R | 2 R/occurrence.R | 10 R/path.R | 45 ++- R/soil_afsis.R | 29 +- R/soil_grids.R | 9 R/soil_isda.R | 2 R/uri_helpers.R | 610 ++++++++++++++++++++++++------------------------ R/worldclim.R | 103 ++++++-- build/partial.rdb |binary man/cmip6.Rd | 4 man/cropland.Rd | 2 man/geodata_path.Rd | 9 man/soil_af.Rd | 10 man/soil_af_elements.Rd | 2 man/soil_af_isda.Rd | 4 man/soil_grids.Rd | 4 man/sp_occurrence.Rd | 18 - 20 files changed, 505 insertions(+), 407 deletions(-)
Title: Advanced Framework for Sap Flow Data Post-Process
Description: Provides a flexible framework for post-processing thermal
dissipation sap flow data using statistical methods and machine learning.
This framework includes anomaly correction, outlier removal, gap-filling,
trend removal, signal damping correction, and sap flux density calculation.
The functions in this package can also apply to other time series with
various artifacts.
Author: Yoshiaki Hata [aut, cre, cph]
Maintainer: Yoshiaki Hata <yoshiakihata0806@gmail.com>
Diff between fluxfixer versions 1.0.0 dated 2026-02-02 and 1.1.0 dated 2026-04-11
DESCRIPTION | 6 - MD5 | 61 +++++------ NAMESPACE | 1 NEWS.md | 34 +++++- R/calc_dtmax.R | 8 - R/remove_statistical_outlier.R | 31 ++++- R/run_fluxfixer.R | 119 +++++++++++++++++++---- R/utils.R | 117 ++++++++++++++++++++++ inst/doc/fluxfixer.Rmd | 14 +- inst/doc/fluxfixer.html | 56 ++++++---- man/calc_dtmax.Rd | 2 man/calc_dtmax_dr.Rd | 6 - man/calc_dtmax_ed.Rd | 2 man/calc_dtmax_mw.Rd | 6 - man/calc_dtmax_mw_dr.Rd | 6 - man/calc_dtmax_pd.Rd | 2 man/calc_dtmax_pd_ed.Rd | 2 man/calc_dtmax_sp.Rd | 2 man/calc_ref_stats.Rd | 4 man/calc_sw_in_toa.Rd | 2 man/check_short_attenuation.Rd | 2 man/filter_highfreq_noise.Rd | 4 man/get_interval.Rd | 2 man/interpret_qc.Rd |only man/modify_short_drift.Rd | 6 - man/remove_manually.Rd | 4 man/remove_zscore_outlier.Rd | 6 - man/run_fluxfixer.Rd | 52 ++++++++-- tests/testthat/test-remove_statistical_outlier.R | 50 ++++++--- tests/testthat/test-run_fluxfixer.R | 11 ++ tests/testthat/test-utils.R | 42 ++++++-- vignettes/fluxfixer.Rmd | 14 +- 32 files changed, 506 insertions(+), 168 deletions(-)
Title: Text Extraction, Rendering and Converting of PDF Documents
Description: Utilities based on 'libpoppler' <https://poppler.freedesktop.org> for extracting
text, fonts, attachments and metadata from a PDF file. Also supports high quality rendering
of PDF documents into PNG, JPEG, TIFF format, or into raw bitmap vectors for further
processing in R.
Author: Jeroen Ooms [aut, cre]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>
Diff between pdftools versions 3.7.0 dated 2026-01-30 and 3.8.0 dated 2026-04-11
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS | 4 ++++ src/bindings.cpp | 1 + 4 files changed, 11 insertions(+), 6 deletions(-)
Title: Database Interface and 'MySQL' Driver for R
Description: Legacy 'DBI' interface to 'MySQL' / 'MariaDB' based on old code
ported from S-PLUS. A modern 'MySQL' client written in 'C++' is available
from the 'RMariaDB' package.
Author: Jeroen Ooms [aut, cre] ,
David James [aut],
Saikat DebRoy [aut],
Hadley Wickham [aut],
Jeffrey Horner [aut],
RStudio [cph]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>
Diff between RMySQL versions 0.11.2 dated 2026-03-02 and 0.11.3 dated 2026-04-11
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS.md | 8 +++++++- src/connection.c | 6 ++++-- 4 files changed, 17 insertions(+), 9 deletions(-)
Title: Knowledge Space Theory Input/Output
Description: Knowledge space theory by Doignon and Falmagne (1999)
<doi:10.1007/978-3-642-58625-5> is a set- and order-theoretical
framework which proposes mathematical formalisms to operationalize
knowledge structures in a particular domain. The 'kstIO' package
provides basic functionalities to read and write KST data from/to
files to be used together with the 'kst', 'kstMatrix', 'pks', or
'DAKS' packages.
Author: Cord Hockemeyer [aut, cre]
Maintainer: Cord Hockemeyer <cord.hockemeyer@uni-graz.at>
Diff between kstIO versions 0.5-0 dated 2026-03-08 and 0.5-1 dated 2026-04-11
Changelog | 5 +++++ DESCRIPTION | 8 ++++---- MD5 | 28 ++++++++++++++++++---------- R/write_kbase.R | 25 ++++++++++++++----------- R/write_kfamset.R | 26 +++++++++++++++----------- R/write_kspace.R | 21 +++++++++++++-------- R/write_kstructure.R | 20 +++++++++++++------- build |only inst |only man/write_kbase.Rd | 4 +++- man/write_kfamset.Rd | 4 +++- man/write_kspace.Rd | 7 ++++++- man/write_kstructure.Rd | 7 ++++++- vignettes |only 14 files changed, 100 insertions(+), 55 deletions(-)
Title: Fast and Efficient Processing of PAM Data
Description: Processing Chlorophyll Fluorescence & P700 Absorbance data. Four models are provided for the regression of Pi curves, which can be compared with each other in order to select the most suitable model for the data set. Control plots ensure the successful verification of each regression. Bundled output of alpha, ETRmax, Ik etc. enables fast and reliable further processing of the data.
Author: Julien Boehm [cre, aut] ,
Philipp Schrag [aut]
Maintainer: Julien Boehm <julien.boehm@uni-rostock.de>
Diff between pam versions 2.0.2 dated 2026-02-23 and 2.1.0 dated 2026-04-11
DESCRIPTION | 8 +- MD5 | 54 ++++++++--------- R/eilers_peeters.R | 2 R/platt.R | 4 - R/util.R | 4 - R/validation.R | 6 - R/vollenweider.R | 12 +-- R/walsby.R | 4 - build/partial.rdb |binary inst/CITATION | 4 - man/eilers_peeters_modified.Rd | 2 man/platt_modified.Rd | 2 man/vollenweider_generate_regression_ETR_I.Rd | 4 - man/vollenweider_generate_regression_ETR_II.Rd | 4 - man/vollenweider_modified.Rd | 2 man/walsby_modified.Rd | 2 tests/testthat/helper-os-detection.R | 11 --- tests/testthat/test-eilers_peeters_etr_I.R | 2 tests/testthat/test-eilers_peeters_etr_II.R | 2 tests/testthat/test-eilers_peeters_junior_pam_etr_II.R | 2 tests/testthat/test-platt_etr_I.R | 2 tests/testthat/test-platt_etr_II.R | 2 tests/testthat/test-universal_data_etr_I.R | 8 +- tests/testthat/test-vollenweider_etr_I.R | 2 tests/testthat/test-vollenweider_etr_II.R | 2 tests/testthat/test-walsby_etr_I.R | 2 tests/testthat/test-walsby_etr_II.R | 2 tests/testthat/test-write_model_result_csv.R | 4 - 28 files changed, 73 insertions(+), 82 deletions(-)
Title: Handling and Analysing EQ-5d Data
Description: The EQ-5D is a widely-used standarized instrument for measuring Health Related Quality Of Life (HRQOL),
developed by the EuroQol group <https://euroqol.org/>. It assesses five dimensions; mobility, self-care,
usual activities, pain/discomfort, and anxiety/depression, using either a three-level (EQ-5D-3L) or five-level (EQ-5D-5L) scale.
Scores from these dimensions are commonly converted into a single utility index using country-specific value sets,
which are critical in clinical and economic evaluations of healthcare and in population health surveys.
The eq5dsuite package enables users to calculate utility index values for the EQ-5D instruments,
including crosswalk utilities using the original crosswalk developed by van Hout et al. (2012) <doi:10.1016/j.jval.2012.02.008>
(mapping EQ-5D-5L responses to EQ-5D-3L index values), or the recently developed reverse crosswalk
by van Hout et al. (2021) <doi:10.1016/j.jval.2021.03.009> (mapping EQ-5D-3L responses
to EQ-5D-5L in [...truncated...]
Author: Kim Rand [aut, cre] ,
Oliver Rivero-Arias [aut] ,
Iryna Schlackow [aut] ,
Anabel Estevez-Carrillo [aut]
Maintainer: Kim Rand <krand@mathsinhealth.com>
Diff between eq5dsuite versions 1.0.2 dated 2026-03-24 and 1.0.3 dated 2026-04-11
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ NEWS.md | 6 ++++++ R/EQ_functions.R | 2 +- R/sysdata.rda |binary inst/shiny/modules/mod_data.R | 4 ++-- man/eqvs_display.Rd | 2 +- 7 files changed, 19 insertions(+), 13 deletions(-)
Title: Semi-Automatic Grading of R and Rmd Scripts
Description: A customisable set of tools for assessing and grading
R or R-markdown scripts from students. It allows for checking correctness
of code output, runtime statistics and static code analysis. The latter
feature is made possible by representing R expressions using a tree
structure.
Author: Vik Gopal [aut],
Agrawal Naman [aut, cre],
Yuting Huang [ctb],
Samuel Seah [aut],
Viknesh Jeya Kumar [aut],
Gabriel Ang [aut],
Ruofan Liu [ctb],
National University of Singapore [cph]
Maintainer: Agrawal Naman <naman.a@nus.edu.sg>
Diff between autoharp versions 0.3.1 dated 2026-04-10 and 0.3.2 dated 2026-04-11
DESCRIPTION | 6 - MD5 | 30 ++++---- NEWS | 3 NEWS.md | 13 ++- README.md | 17 ++-- inst/doc/bg_concepts.Rmd | 4 - inst/doc/bg_concepts.html | 22 ++--- inst/doc/getting-started.R | 50 ++++--------- inst/doc/getting-started.Rmd | 100 +++++++++++++-------------- inst/doc/getting-started.html | 151 ++++++++++++++++++----------------------- inst/doc/shiny_similarity.Rmd | 6 - inst/doc/shiny_similarity.html | 40 +++++----- vignettes/bg_concepts.Rmd | 4 - vignettes/getting-started.Rmd | 100 +++++++++++++-------------- vignettes/references.bib | 2 vignettes/shiny_similarity.Rmd | 6 - 16 files changed, 262 insertions(+), 292 deletions(-)
Title: Generate Comment Boxes with Custom Alignment
Description: Provides a function to generate comment boxes framed with '#'
characters, with configurable width and text alignment (left, center,
or right). Useful for formatting scripts and improving code readability.
Author: Gregoire Muller [aut, cre]
Maintainer: Gregoire Muller <muller.gregoire@protonmail.com>
Diff between easyComment versions 2.0.0 dated 2026-04-03 and 2.1.0 dated 2026-04-11
DESCRIPTION | 13 - MD5 | 9 - R/comment_box.R | 335 +++++++++++++++++++++++--------------- README.md |only man/generate_comment_box.Rd | 132 +++++++++----- tests/testthat/test-comment_box.R | 185 +++++++++++++++++--- 6 files changed, 455 insertions(+), 219 deletions(-)
Title: Partial Profile Score Feature Selection in High-Dimensional
Generalized Linear Interaction Models
Description: This is an implementation of the partial profile score feature
selection (PPSFS) approach to generalized linear (interaction) models.
The PPSFS is highly scalable even for ultra-high-dimensional feature space.
See the paper by Xu, Luo and Chen (2022) <doi:10.4310/21-SII706>.
Author: Zengchao Xu [aut, cre],
Shan Luo [aut],
Zehua Chen [aut]
Maintainer: Zengchao Xu <zengc.xu@aliyun.com>
Diff between PPSFS versions 0.1.1 dated 2025-07-03 and 0.1.3 dated 2026-04-11
DESCRIPTION | 13 ++++++------- MD5 | 16 +++++++++------- NAMESPACE | 2 ++ NEWS.md | 13 +++++++++++++ R/PPSFS-package.R | 27 ++++++++++++++------------- R/ppsfs.R | 5 ++--- R/ppsfs.fit.R |only man/PPS-method.Rd | 5 ++--- man/PPSFS-package.Rd | 2 +- man/ppsfs.fit.Rd |only 10 files changed, 49 insertions(+), 34 deletions(-)
Title: Econometric Tools for Performance and Risk Analysis
Description: Collection of econometric functions for performance and risk
analysis. In addition to standard risk and performance metrics, this
package aims to aid practitioners and researchers in utilizing the latest
research in analysis of non-normal return streams. In general, it is most
tested on return (rather than price) data on a regular scale, but most
functions will work with irregular return data as well, and increasing
numbers of functions will work with P&L or price data where possible.
Author: Brian G. Peterson [cre, aut, cph],
Peter Carl [aut, cph],
Kris Boudt [ctb, cph],
Ross Bennett [ctb],
Joshua Ulrich [ctb],
Eric Zivot [ctb],
Dries Cornilly [ctb],
Eric Hung [ctb],
Matthieu Lestel [ctb],
Kyle Balkissoon [ctb],
Diethelm Wuertz [ctb],
An [...truncated...]
Maintainer: Brian G. Peterson <brian@braverock.com>
Diff between PerformanceAnalytics versions 2.0.8 dated 2024-12-09 and 2.1.0 dated 2026-04-11
PerformanceAnalytics-2.0.8/PerformanceAnalytics/inst/tinytest |only PerformanceAnalytics-2.0.8/PerformanceAnalytics/tests/tinytest.R |only PerformanceAnalytics-2.1.0/PerformanceAnalytics/DESCRIPTION | 43 PerformanceAnalytics-2.1.0/PerformanceAnalytics/MD5 | 577 +++++--- PerformanceAnalytics-2.1.0/PerformanceAnalytics/NAMESPACE | 9 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/ActivePremium.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/AdjustedSharpeRatio.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/AppraisalRatio.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/BernadoLedoitratio.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/BurkeRatio.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/CAPM.alpha.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/CAPM.beta.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/CAPM.epsilon.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/CAPM.jensenAlpha.R | 110 - PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/CAPM.utils.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/CDAR.alpha.R | 111 - PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/CalmarRatio.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/CoMoments.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/DRatio.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/DownsideDeviation.R | 92 - PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/DownsideFrequency.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/DrawdownPeak.R | 59 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/Drawdowns.R | 43 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/ES.R | 606 +++++--- PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/FamaBeta.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/Frequency.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/HerfindahlIndex.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/HurstIndex.R | 89 - PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/InformationRatio.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/Kappa.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/KellyRatio.R | 8 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/Level.calculate.R | 386 +++-- PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/M2Sortino.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/MM.NCE.R | 439 +++--- PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/MSquared.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/MSquaredExcess.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/MarketTiming.R | 6 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/MartinRatio.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/MeanAbsoluteDeviation.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/MinTRL.R | 5 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/MultivariateMoments.R | 6 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/NetSelectivity.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/Omega.R | 263 ++- PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/OmegaExcessReturn.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/OmegaSharpeRatio.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/PainIndex.R | 76 - PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/PainRatio.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/PerformanceAnalytics-package.R | 332 ++-- PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/PortfolioRisk.R | 4 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/ProbSharpeRatio.R | 197 +- PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/ProspectRatio.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/Return.Geltner.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/Return.annualized.R | 116 - PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/Return.calculate.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/Return.clean.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/Return.convert.R | 199 ++ PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/Return.cumulative.R | 62 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/Return.excess.R | 92 - PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/Return.locScaleRob.R | 8 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/Return.portfolio.R | 676 +++++----- PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/Return.read.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/Return.relative.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/Selectivity.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/SemiDeviation.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/SharpeRatio.R | 349 +++-- PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/SharpeRatio.annualized.R | 87 - PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/SkewnessKurtosisRatio.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/SmoothingIndex.R | 205 +-- PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/SortinoRatio.R | 117 - PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/SpecificRisk.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/StdDev.R | 249 ++- PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/StdDev.annualized.R | 119 + PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/SystematicRisk.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/TotalRisk.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/TrackingError.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/TreynorRatio.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/UlcerIndex.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/UpDownRatios.R | 160 +- PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/UpsideFrequency.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/UpsidePotentialRatio.R | 97 - 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More information about PerformanceAnalytics at CRAN
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Title: Derivative-Based Optimization with User-Defined Convergence
Criteria
Description: Provides a derivative-based optimization framework that allows users
to combine eight convergence criteria. Unlike standard optimization functions, this package includes a
built-in mechanism to verify the positive definiteness of the Hessian matrix
at the point of convergence. This additional check helps prevent the solver
from falsely identifying non-optimal solutions, such as saddle points, as
valid minima.
Author: Eunseong Cho [aut, cre]
Maintainer: Eunseong Cho <bene@kw.ac.kr>
This is a re-admission after prior archival of version 0.1.0 dated 2026-02-07
Diff between optimflex versions 0.1.0 dated 2026-02-07 and 0.1.6 dated 2026-04-11
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Title: The Multiplicative Multinomial Distribution
Description: Various utilities for the Multiplicative Multinomial distribution.
Author: Robin K. S. Hankin [aut, cre],
P. M. E. Altham [aut]
Maintainer: Robin K. S. Hankin <hankin.robin@gmail.com>
Diff between MM versions 1.6-8 dated 2024-05-16 and 1.7-0 dated 2026-04-11
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Title: Calibration, Validation, and Simulation of TKTD Models
Description: Eases the use of ecotoxicological effect models. Can simulate
common toxicokinetic-toxicodynamic (TK/TD) models such as
General Unified Threshold models of Survival (GUTS) and Lemna. It can
derive effects and effect profiles (EPx) from scenarios. It supports the
use of 'tidyr' workflows employing the pipe symbol. Time-consuming
tasks can be parallelized.
Author: Nils Kehrein [aut, cre],
Dirk Nickisch [aut],
Peter Vermeiren [aut],
Torben Wittwer [ctb],
Johannes Witt [ctb],
Andre Gergs [ctb]
Maintainer: Nils Kehrein <nils.kehrein@gmail.com>
Diff between cvasi versions 1.5.0 dated 2025-09-11 and 1.5.1 dated 2026-04-11
cvasi-1.5.0/cvasi/inst/fit_log.Rmd |only cvasi-1.5.0/cvasi/inst/fit_log.html |only cvasi-1.5.1/cvasi/DESCRIPTION | 8 cvasi-1.5.1/cvasi/MD5 | 46 +-- cvasi-1.5.1/cvasi/NEWS.md | 8 cvasi-1.5.1/cvasi/R/calibrate.R | 6 cvasi-1.5.1/cvasi/R/fit_growth.R | 5 cvasi-1.5.1/cvasi/R/fit_tktd.R | 8 cvasi-1.5.1/cvasi/R/globals.R | 126 ++++---- cvasi-1.5.1/cvasi/R/model-guts.R | 4 cvasi-1.5.1/cvasi/R/set_times.R | 4 cvasi-1.5.1/cvasi/R/simulate.R | 3 cvasi-1.5.1/cvasi/build/partial.rdb |binary cvasi-1.5.1/cvasi/build/vignette.rds |binary cvasi-1.5.1/cvasi/data/schmitt2013.rda |binary cvasi-1.5.1/cvasi/inst/doc/cvasi-1-manual.R | 12 cvasi-1.5.1/cvasi/inst/doc/cvasi-1-manual.html | 1 cvasi-1.5.1/cvasi/inst/doc/cvasi-2-howto.R | 28 - cvasi-1.5.1/cvasi/inst/doc/cvasi-2-howto.html | 205 +++++++------- cvasi-1.5.1/cvasi/man/GUTS_IT.Rd | 2 cvasi-1.5.1/cvasi/man/GUTS_SD.Rd | 2 cvasi-1.5.1/cvasi/man/fit_growth.Rd | 5 cvasi-1.5.1/cvasi/man/fit_tktd.Rd | 8 cvasi-1.5.1/cvasi/tests/testthat/test-simulate_scenario.R | 18 + cvasi-1.5.1/cvasi/tests/testthat/test-solver.R | 2 25 files changed, 268 insertions(+), 233 deletions(-)
Title: Vector Helpers
Description: Defines new notions of prototype and size that are used to
provide tools for consistent and well-founded type-coercion and
size-recycling, and are in turn connected to ideas of type- and
size-stability useful for analysing function interfaces.
Author: Hadley Wickham [aut],
Lionel Henry [aut],
Davis Vaughan [aut, cre],
data.table team [cph] and
their contribution to R's order),
Posit Software, PBC [cph, fnd]
Maintainer: Davis Vaughan <davis@posit.co>
Diff between vctrs versions 0.7.2 dated 2026-03-21 and 0.7.3 dated 2026-04-11
DESCRIPTION | 7 ++++--- MD5 | 26 +++++++++++++------------- NEWS.md | 6 ++++++ build/vignette.rds |binary inst/doc/pillar.html | 47 ++++++++++++++++++++++++----------------------- inst/doc/s3-vector.html | 21 +++++++++++---------- inst/doc/stability.html | 6 +++--- inst/doc/type-size.html | 9 +++++---- src/rlang/env-binding.c | 13 +++++++++---- src/rlang/env.c | 14 ++++++-------- src/rlang/globals.c | 1 - src/rlang/globals.h | 1 - src/rlang/rlang-types.h | 2 +- src/version.c | 2 +- 14 files changed, 83 insertions(+), 72 deletions(-)
Title: Tensors and Neural Networks with 'GPU' Acceleration
Description: Provides functionality to define and train neural networks similar to
'PyTorch' by Paszke et al (2019) <doi:10.48550/arXiv.1912.01703> but written entirely in R
using the 'libtorch' library. Also supports low-level tensor operations and
'GPU' acceleration.
Author: Tomasz Kalinowski [ctb, cre],
Daniel Falbel [aut, cph],
Javier Luraschi [aut],
Dmitriy Selivanov [ctb],
Athos Damiani [ctb],
Christophe Regouby [ctb],
Krzysztof Joachimiak [ctb],
Hamada S. Badr [ctb],
Sebastian Fischer [ctb],
Maximilian Pichler [ctb] [...truncated...]
Maintainer: Tomasz Kalinowski <tomasz@posit.co>
Diff between torch versions 0.16.3 dated 2025-11-02 and 0.17.0 dated 2026-04-11
torch-0.16.3/torch/inst/po/fr/LC_MESSAGES/torch.mo |only torch-0.16.3/torch/vignettes/model.pt |only torch-0.16.3/torch/vignettes/tensor.pt |only torch-0.17.0/torch/DESCRIPTION | 14 torch-0.17.0/torch/MD5 | 122 - torch-0.17.0/torch/NAMESPACE | 9 torch-0.17.0/torch/NEWS.md | 30 torch-0.17.0/torch/R/RcppExports.R | 148 + torch-0.17.0/torch/R/conditions.R | 15 torch-0.17.0/torch/R/dtype.R | 13 torch-0.17.0/torch/R/gen-method.R | 2 torch-0.17.0/torch/R/gen-namespace-docs.R | 137 + torch-0.17.0/torch/R/gen-namespace-examples.R | 21 torch-0.17.0/torch/R/gen-namespace.R | 275 +- torch-0.17.0/torch/R/ignite.R | 6 torch-0.17.0/torch/R/install.R | 964 +++++++++- torch-0.17.0/torch/R/lantern_load.R | 31 torch-0.17.0/torch/R/operators.R | 8 torch-0.17.0/torch/R/tensor.R | 28 torch-0.17.0/torch/R/utils.R | 11 torch-0.17.0/torch/R/wrapers.R | 25 torch-0.17.0/torch/README.md | 1 torch-0.17.0/torch/build/partial.rdb |binary torch-0.17.0/torch/build/vignette.rds |binary torch-0.17.0/torch/inst/doc/installation.Rmd | 64 torch-0.17.0/torch/inst/doc/installation.html | 81 torch-0.17.0/torch/inst/include/lantern/lantern.h | 114 - torch-0.17.0/torch/inst/include/torch.h | 11 torch-0.17.0/torch/inst/po/fr/LC_MESSAGES/R-torch.mo |binary torch-0.17.0/torch/man/install_torch_sitrep.Rd |only torch-0.17.0/torch/man/torch_addmm.Rd | 4 torch-0.17.0/torch/man/torch_baddbmm.Rd | 4 torch-0.17.0/torch/man/torch_bmm.Rd | 4 torch-0.17.0/torch/man/torch_dtype.Rd | 6 torch-0.17.0/torch/man/torch_ldexp.Rd |only torch-0.17.0/torch/man/torch_mm.Rd | 4 torch-0.17.0/torch/man/torch_scaled_dot_product_attention.Rd |only torch-0.17.0/torch/man/torch_sparse_sampled_addmm.Rd |only torch-0.17.0/torch/po/R-fr.po | 283 +- torch-0.17.0/torch/po/R-torch.pot | 236 +- torch-0.17.0/torch/po/fr.po | 6 torch-0.17.0/torch/po/torch.pot | 4 torch-0.17.0/torch/src/Makevars.in | 2 torch-0.17.0/torch/src/RcppExports.cpp | 474 +++- torch-0.17.0/torch/src/autograd.cpp | 18 torch-0.17.0/torch/src/codegen.cpp | 19 torch-0.17.0/torch/src/device.cpp | 1 torch-0.17.0/torch/src/dtype.cpp | 10 torch-0.17.0/torch/src/gen-namespace.cpp | 167 + torch-0.17.0/torch/src/indexing.cpp | 13 torch-0.17.0/torch/src/lantern.cpp | 28 torch-0.17.0/torch/src/tensor.cpp | 5 torch-0.17.0/torch/src/torch_api.cpp | 4 torch-0.17.0/torch/src/trace.cpp | 11 torch-0.17.0/torch/tests/testthat/test-dtype.R | 28 torch-0.17.0/torch/tests/testthat/test-gen-namespace.R | 55 torch-0.17.0/torch/tests/testthat/test-nn.R | 26 torch-0.17.0/torch/tests/testthat/test-operators.R | 34 torch-0.17.0/torch/tests/testthat/test-tensor.R | 103 + torch-0.17.0/torch/tests/testthat/test-utils-data.R | 22 torch-0.17.0/torch/tests/testthat/tracedmodule.pt |binary torch-0.17.0/torch/tools/renamelib.R | 2 torch-0.17.0/torch/tools/torchgen/R/r.R | 2 torch-0.17.0/torch/tools/torchgen/R/utils.R | 4 torch-0.17.0/torch/tools/torchgen/inst/declaration/Declarations-2.8.0.yaml |only torch-0.17.0/torch/vignettes/installation.Rmd | 64 66 files changed, 3118 insertions(+), 655 deletions(-)
Title: Data Structures for Single Cell Data
Description: Defines S4 classes for single-cell genomic data and associated
information, such as dimensionality reduction embeddings, nearest-neighbor
graphs, and spatially-resolved coordinates. Provides data access methods and
R-native hooks to ensure the Seurat object is familiar to other R users. See
Satija R, Farrell J, Gennert D, et al (2015) <doi:10.1038/nbt.3192>,
Macosko E, Basu A, Satija R, et al (2015) <doi:10.1016/j.cell.2015.05.002>,
and Stuart T, Butler A, et al (2019) <doi:10.1016/j.cell.2019.05.031>,
Hao Y, Hao S, et al (2021) <doi:10.1016/j.cell.2021.04.048> and
Hao Y, et al (2023) <doi:10.1101/2022.02.24.481684> for
more details.
Author: Paul Hoffman [aut] ,
Rahul Satija [aut, cre] ,
David Collins [aut] ,
Yuhan Hao [aut] ,
Austin Hartman [aut] ,
Gesmira Molla [aut] ,
Andrew Butler [aut] ,
Tim Stuart [aut] ,
Madeline Kowalski [ctb] ,
Saket Choudhary [ctb] ,
Skylar Li [ctb],
Longda Jia [...truncated...]
Maintainer: Rahul Satija <seurat@nygenome.org>
Diff between SeuratObject versions 5.3.0 dated 2025-12-12 and 5.4.0 dated 2026-04-11
DESCRIPTION | 6 +- MD5 | 42 +++++++-------- NAMESPACE | 2 NEWS.md | 13 ++++ R/assay5.R | 46 ++++++++-------- R/fov.R | 59 ++++++++++++++++++++- R/generics.R | 26 +++++++++ R/seurat.R | 89 ++++++++++++++++++++++++-------- R/utils.R | 110 +++++++++++++++++++++++++++++++++------- build/SeuratObject.pdf |binary build/partial.rdb |binary build/stage23.rdb |binary man/Crop.Rd | 3 - man/DefaultDimReduc.Rd | 34 +++++++++++- man/FetchData.Rd | 3 + man/SaveSeuratRds.Rd | 6 +- man/dot-GetConsensusFeatures.Rd | 12 ++-- man/dot-GetVariableFeatures.Rd | 2 man/sub-LogMap-method.Rd | 2 man/subset.Seurat.Rd | 23 ++++++++ man/v5-assay-summaries.Rd | 2 tests/testthat/test_objects.R | 31 +++++++++++ 22 files changed, 402 insertions(+), 109 deletions(-)
Title: R Commander
Description: A platform-independent basic-statistics GUI (graphical user interface) for R, based on the tcltk package.
Author: John Fox [aut],
Milan Bouchet-Valat [aut],
Manuel Munoz-Marquez [aut, cre],
Liviu Andronic [ctb],
Michael Ash [ctb],
Theophilius Boye [ctb],
Stefano Calza [ctb],
Andy Chang [ctb],
Vilmantas Gegzna [ctb],
Philippe Grosjean [ctb],
Richard Heiberger [ct [...truncated...]
Maintainer: Manuel Munoz-Marquez <manuel.munoz@uca.es>
Diff between Rcmdr versions 2.9-5 dated 2024-10-24 and 2.12.2 dated 2026-04-11
Rcmdr-2.12.2/Rcmdr/DESCRIPTION | 22 Rcmdr-2.12.2/Rcmdr/MD5 | 119 Rcmdr-2.12.2/Rcmdr/NAMESPACE | 460 Rcmdr-2.12.2/Rcmdr/NEWS | 16 Rcmdr-2.12.2/Rcmdr/R/Rcmdr-internal.R |only Rcmdr-2.12.2/Rcmdr/R/Rcmdr-package.R |only Rcmdr-2.12.2/Rcmdr/R/Rcmdr.Utilities.R |only Rcmdr-2.12.2/Rcmdr/R/Rexcel-specific.R | 1 Rcmdr-2.12.2/Rcmdr/R/cluster.R | 29 Rcmdr-2.12.2/Rcmdr/R/commander.R | 13 Rcmdr-2.12.2/Rcmdr/R/data-menu.R | 106 Rcmdr-2.12.2/Rcmdr/R/file-menu.R | 115 Rcmdr-2.12.2/Rcmdr/R/globals.R | 4 Rcmdr-2.12.2/Rcmdr/R/graphs-menu.R | 36 Rcmdr-2.12.2/Rcmdr/R/statistics-dimensional-menu.R | 21 Rcmdr-2.12.2/Rcmdr/R/statistics-means-menu.R | 34 Rcmdr-2.12.2/Rcmdr/R/statistics-models-menu.R | 77 Rcmdr-2.12.2/Rcmdr/R/statistics-summaries-menu.R | 15 Rcmdr-2.12.2/Rcmdr/R/statistics-tables-menu.R | 81 Rcmdr-2.12.2/Rcmdr/R/utilities.R | 490 Rcmdr-2.12.2/Rcmdr/build/vignette.rds |binary Rcmdr-2.12.2/Rcmdr/inst/doc/Commander-ru.Rnw |only Rcmdr-2.12.2/Rcmdr/inst/doc/Commander-ru.pdf |binary Rcmdr-2.12.2/Rcmdr/inst/doc/Empezando-con-Rcmdr-es.R | 2 Rcmdr-2.12.2/Rcmdr/inst/doc/Empezando-con-Rcmdr-es.Rnw | 13 Rcmdr-2.12.2/Rcmdr/inst/doc/Empezando-con-Rcmdr-es.pdf |binary Rcmdr-2.12.2/Rcmdr/inst/doc/Getting-Started-with-the-Rcmdr-ja.Rnw |only Rcmdr-2.12.2/Rcmdr/inst/doc/Getting-Started-with-the-Rcmdr-ja.pdf |binary Rcmdr-2.12.2/Rcmdr/inst/doc/Getting-Started-with-the-Rcmdr-ko.Rnw |only Rcmdr-2.12.2/Rcmdr/inst/doc/Getting-Started-with-the-Rcmdr-ko.pdf |binary Rcmdr-2.12.2/Rcmdr/inst/doc/Getting-Started-with-the-Rcmdr.Rnw | 8 Rcmdr-2.12.2/Rcmdr/inst/doc/Getting-Started-with-the-Rcmdr.pdf |binary Rcmdr-2.12.2/Rcmdr/inst/etc/Rcmdr-menus.txt | 2 Rcmdr-2.12.2/Rcmdr/inst/etc/language.csv |only Rcmdr-2.12.2/Rcmdr/inst/po/ca/LC_MESSAGES/R-Rcmdr.mo |binary Rcmdr-2.12.2/Rcmdr/inst/po/es/LC_MESSAGES/R-Rcmdr.mo |binary Rcmdr-2.12.2/Rcmdr/man/AuxiliarySoftware.Rd | 63 Rcmdr-2.12.2/Rcmdr/man/CFA.Rd | 58 Rcmdr-2.12.2/Rcmdr/man/Commander-es.Rd | 8 Rcmdr-2.12.2/Rcmdr/man/Commander.Rd | 2 Rcmdr-2.12.2/Rcmdr/man/Compute.Rd | 51 Rcmdr-2.12.2/Rcmdr/man/Plugins.Rd | 49 Rcmdr-2.12.2/Rcmdr/man/Rcmdr-package.Rd | 59 Rcmdr-2.12.2/Rcmdr/man/Rcmdr.Utilities.Rd | 824 Rcmdr-2.12.2/Rcmdr/man/RcmdrPager.Rd | 49 Rcmdr-2.12.2/Rcmdr/man/RecodeDialog.Rd | 95 Rcmdr-2.12.2/Rcmdr/man/RepeatedMeasuresDialogs.Rd | 90 Rcmdr-2.12.2/Rcmdr/man/ReshapeDatasetDialogs.Rd | 38 Rcmdr-2.12.2/Rcmdr/man/Scatter3DDialog.Rd | 97 Rcmdr-2.12.2/Rcmdr/man/ScriptEditor.Rd |only Rcmdr-2.12.2/Rcmdr/man/editDataset.Rd | 171 Rcmdr-2.12.2/Rcmdr/man/generalizedLinearModel.Rd | 70 Rcmdr-2.12.2/Rcmdr/man/hierarchicalCluster.Rd | 76 Rcmdr-2.12.2/Rcmdr/man/linearModel.Rd | 64 Rcmdr-2.12.2/Rcmdr/man/reexports.Rd |only Rcmdr-2.12.2/Rcmdr/man/saveOptions.Rd | 87 Rcmdr-2.12.2/Rcmdr/po/R-Rcmdr.pot | 50 Rcmdr-2.12.2/Rcmdr/po/R-ca.po |11588 +++++----- Rcmdr-2.12.2/Rcmdr/po/R-es.po | 163 Rcmdr-2.12.2/Rcmdr/vignettes/Commander-ru.Rnw |only Rcmdr-2.12.2/Rcmdr/vignettes/Commander-ru.asis.pdf |only Rcmdr-2.12.2/Rcmdr/vignettes/Empezando-con-Rcmdr-es.Rnw | 13 Rcmdr-2.12.2/Rcmdr/vignettes/Getting-Started-with-the-Rcmdr-ja.Rnw |only Rcmdr-2.12.2/Rcmdr/vignettes/Getting-Started-with-the-Rcmdr-ja.asis.pdf |only Rcmdr-2.12.2/Rcmdr/vignettes/Getting-Started-with-the-Rcmdr-ko.Rnw |only Rcmdr-2.12.2/Rcmdr/vignettes/Getting-Started-with-the-Rcmdr-ko.asis.pdf |only Rcmdr-2.12.2/Rcmdr/vignettes/Getting-Started-with-the-Rcmdr.Rnw | 8 Rcmdr-2.9-5/Rcmdr/man/Rcmdr-internal.Rd |only Rcmdr-2.9-5/Rcmdr/man/RcmdrEditor.Rd |only 69 files changed, 9085 insertions(+), 6352 deletions(-)
Title: Cubature over Polygonal Domains
Description: Numerical integration of continuously differentiable
functions f(x,y) over simple closed polygonal domains.
The following cubature methods are implemented:
product Gauss cubature (Sommariva and Vianello, 2007,
<doi:10.1007/s10543-007-0131-2>),
the simple two-dimensional midpoint rule
(wrapping 'spatstat.geom' functions), and
adaptive cubature for radially symmetric functions via line
integrate() along the polygon boundary (Meyer and Held, 2014,
<doi:10.1214/14-AOAS743>, Supplement B).
For simple integration along the axes, the 'cubature' package
is more appropriate.
Author: Sebastian Meyer [aut, cre, trl] ,
Leonhard Held [ths],
Michael Hoehle [ths]
Maintainer: Sebastian Meyer <seb.meyer@fau.de>
Diff between polyCub versions 0.9.2 dated 2025-02-11 and 0.9.3 dated 2026-04-11
polyCub-0.9.2/polyCub/man/dotprod.Rd |only polyCub-0.9.2/polyCub/man/isClosed.Rd |only polyCub-0.9.2/polyCub/man/isScalar.Rd |only polyCub-0.9.2/polyCub/man/plot_polyregion.Rd |only polyCub-0.9.2/polyCub/man/polygauss.Rd |only polyCub-0.9.2/polyCub/man/vecnorm.Rd |only polyCub-0.9.3/polyCub/DESCRIPTION | 29 +- polyCub-0.9.3/polyCub/MD5 | 61 ++--- polyCub-0.9.3/polyCub/NAMESPACE | 4 polyCub-0.9.3/polyCub/NEWS.md | 9 polyCub-0.9.3/polyCub/R/circleCub.R | 7 polyCub-0.9.3/polyCub/R/coerce-sp-methods.R | 2 polyCub-0.9.3/polyCub/R/plotpolyf.R | 4 polyCub-0.9.3/polyCub/R/polyCub.SV.R | 32 +- polyCub-0.9.3/polyCub/R/polyCub.exact.Gauss.R | 10 polyCub-0.9.3/polyCub/R/polyCub.iso.R | 15 - polyCub-0.9.3/polyCub/R/polyCub.midpoint.R | 6 polyCub-0.9.3/polyCub/R/tools.R | 47 +--- polyCub-0.9.3/polyCub/R/zzz.R | 31 -- polyCub-0.9.3/polyCub/build/partial.rdb |binary polyCub-0.9.3/polyCub/build/vignette.rds |binary polyCub-0.9.3/polyCub/inst/CITATION | 3 polyCub-0.9.3/polyCub/inst/REFERENCES.R |only polyCub-0.9.3/polyCub/inst/doc/polyCub.R | 12 - polyCub-0.9.3/polyCub/inst/doc/polyCub.Rmd | 97 ++++---- polyCub-0.9.3/polyCub/inst/doc/polyCub.html | 249 +++++++++-------------- polyCub-0.9.3/polyCub/man/circleCub.Gauss.Rd | 6 polyCub-0.9.3/polyCub/man/coerce-gpc-methods.Rd | 2 polyCub-0.9.3/polyCub/man/polyCub-package.Rd | 31 -- polyCub-0.9.3/polyCub/man/polyCub.SV.Rd | 29 +- polyCub-0.9.3/polyCub/man/polyCub.exact.Gauss.Rd | 6 polyCub-0.9.3/polyCub/man/polyCub.iso.Rd | 16 - polyCub-0.9.3/polyCub/man/polyCub.midpoint.Rd | 7 polyCub-0.9.3/polyCub/man/sfg2gpc.Rd | 2 polyCub-0.9.3/polyCub/vignettes/polyCub.Rmd | 97 ++++---- 35 files changed, 347 insertions(+), 467 deletions(-)
Title: Network Meta-Analysis using Frequentist Methods
Description: A comprehensive set of functions providing frequentist methods for network meta-analysis (Balduzzi et al., 2023) <doi:10.18637/jss.v106.i02> and supporting Schwarzer et al. (2015) <doi:10.1007/978-3-319-21416-0>, Chapter 8 "Network Meta-Analysis":
- frequentist network meta-analysis following Rücker (2012) <doi:10.1002/jrsm.1058>;
- additive network meta-analysis for combinations of treatments (Rücker et al., 2020) <doi:10.1002/bimj.201800167>;
- network meta-analysis of binary data using the Mantel-Haenszel or non-central hypergeometric distribution method (Efthimiou et al., 2019) <doi:10.1002/sim.8158>, or penalised logistic regression (Evrenoglou et al., 2022) <doi:10.1002/sim.9562>;
- rankograms and ranking of treatments by the Surface under the cumulative ranking curve (SUCRA) (Salanti et al., 2013) <doi:10.1016/j.jclinepi.2010.03.016>;
- ranking of treatments using P-scores (frequentist analogue of SUCRAs without resampling) according to [...truncated...]
Author: Gerta Ruecker [aut] ,
Ulrike Krahn [aut],
Jochem Koenig [aut] ,
Orestis Efthimiou [aut] ,
Annabel Davies [aut] ,
Theodoros Papakonstantinou [aut] ,
Theodoros Evrenoglou [ctb] ,
Krzysztof Ciomek [ctb] ,
Nana-Adjoa Kwarteng [ctb] ,
Guido Schwarzer [aut, [...truncated...]
Maintainer: Guido Schwarzer <guido.schwarzer@uniklinik-freiburg.de>
Diff between netmeta versions 3.3-1 dated 2026-01-28 and 3.4-0 dated 2026-04-11
DESCRIPTION | 10 - MD5 | 250 +++++++++++++++++------------------ NAMESPACE | 3 NEWS.md | 20 ++ R/Baker2009.R | 8 - R/Dogliotti2014.R | 8 - R/Dong2013.R | 8 - R/Franchini2012.R | 8 - R/Gurusamy2011.R | 8 - R/Linde2015.R | 8 - R/Linde2016.R | 3 R/Senn2013.R | 5 R/Stowe2010.R | 6 R/Woods2010.R | 9 - R/as.data.frame.netconnection.R | 6 R/as.data.frame.netmeta.R | 8 - R/crossnma2netmeta.R | 8 - R/decomp.design.R | 19 +- R/forest.netcomplex.R | 21 +- R/forest.netsplit.R | 2 R/funnel.netmeta.R | 25 ++- R/hasse.R | 14 - R/hatmatrix.R | 20 +- R/heatplot.R | 19 +- R/heatplot.netmeta.R | 19 +- R/invmat.R | 8 - R/merge.pairwise.R | 15 +- R/metabias.netmeta.R | 19 +- R/netbind.R | 25 +-- R/netcomb.R | 49 +++--- R/netcomparison.R | 44 +++--- R/netcomplex.R | 39 ++--- R/netconnection.R | 22 +-- R/netcontrib.R | 12 - R/netdistance.R | 16 +- R/netgraph.discomb.R | 5 R/netgraph.netcomb.R | 15 +- R/netgraph.netconnection.R | 4 R/netgraph.netimpact.R | 6 R/netgraph.netmeta.R | 64 ++++---- R/netheat.R | 30 ++-- R/netimpact.R | 16 +- R/netleague.R | 50 +++---- R/netmatrix.R | 10 - R/netmeasures.R | 10 - R/netmeta-package.R | 2 R/netmeta.R | 84 ++++++----- R/netmetabin.R | 92 +++++++++++- R/netmetareg-internal.R | 264 ++++++++++++++++++++++++++++++++++++- R/netmetareg.R | 151 ++++++++++++++++----- R/netpairwise.R | 16 +- R/netposet.R | 32 ++-- R/netrank.R | 32 ++-- R/netsplit.R | 38 ++--- R/nettable.R | 22 +-- R/plot.netposet.R | 2 R/plot.netrank.R | 2 R/plot.rankogram.R | 24 +-- R/print.netmeta.R | 2 R/radial.netmeta.R | 23 +-- R/rankogram.R | 2 R/rankogram.default.R | 15 -- R/rankogram.netmeta.R | 18 +- R/summary.netmetareg.R | 8 - R/treats.R | 20 +- build/vignette.rds |binary inst/doc/netmeta-workflow.pdf |binary inst/doc/netmeta.pdf |binary man/Baker2009.Rd | 8 - man/Dogliotti2014.Rd | 8 - man/Dong2013.Rd | 8 - man/Franchini2012.Rd | 8 - man/Gurusamy2011.Rd | 8 - man/Linde2015.Rd | 8 - man/Linde2016.Rd | 3 man/Senn2013.Rd | 5 man/Stowe2010.Rd | 6 man/Woods2010.Rd | 9 - man/as.data.frame.netconnection.Rd | 6 man/as.data.frame.netmeta.Rd | 8 - man/crossnma2netmeta.Rd | 8 - man/decomp.design.Rd | 19 +- man/forest.netcomplex.Rd | 21 +- man/forest.netsplit.Rd | 2 man/funnel.netmeta.Rd | 25 ++- man/hasse.netposet.Rd | 14 - man/hatmatrix.Rd | 20 +- man/heatplot.Rd | 19 +- man/heatplot.netmeta.Rd | 19 +- man/invmat.Rd | 8 - man/merge.pairwise.Rd | 15 +- man/metabias.netmeta.Rd | 19 +- man/netbind.Rd | 25 +-- man/netcomb.Rd | 49 +++--- man/netcomparison.Rd | 44 +++--- man/netcomplex.Rd | 39 ++--- man/netconnection.Rd | 22 +-- man/netcontrib.Rd | 12 - man/netdistance.Rd | 16 +- man/netgraph.discomb.Rd | 5 man/netgraph.netcomb.Rd | 15 +- man/netgraph.netconnection.Rd | 4 man/netgraph.netimpact.Rd | 6 man/netgraph.netmeta.Rd | 60 ++++---- man/netheat.Rd | 30 ++-- man/netimpact.Rd | 16 +- man/netleague.Rd | 50 +++---- man/netmatrix.Rd | 10 - man/netmeasures.Rd | 10 - man/netmeta.Rd | 84 ++++++----- man/netmetabin.Rd | 6 man/netmetareg.Rd | 10 - man/netpairwise.Rd | 16 +- man/netposet.Rd | 32 ++-- man/netrank.Rd | 32 ++-- man/netsplit.Rd | 38 ++--- man/nettable.Rd | 22 +-- man/plot.netposet.Rd | 2 man/plot.netrank.Rd | 2 man/plot.rankogram.Rd | 18 +- man/radial.netmeta.Rd | 23 +-- man/rankogram.Rd | 2 man/rankogram.default.Rd | 15 -- man/rankogram.netmeta.Rd | 18 +- man/summary.netmetareg.Rd | 8 - man/treats.Rd | 20 +- 126 files changed, 1698 insertions(+), 1160 deletions(-)
Title: Read and Write 'Parquet' Files
Description: Self-sufficient reader and writer for flat 'Parquet' files.
Can read most 'Parquet' data types. Can write many 'R' data types,
including factors and temporal types. See docs for limitations.
Author: Gabor Csardi [aut, cre],
Hannes Muehleisen [aut, cph] ,
Google Inc. [cph],
Apache Software Foundation [cph],
Posit Software, PBC [cph],
RAD Game Tools [cph],
Valve Software [cph],
Tenacious Software LLC [cph],
Facebook, Inc. [cph]
Maintainer: Gabor Csardi <csardi.gabor@gmail.com>
Diff between nanoparquet versions 0.4.3 dated 2025-12-17 and 0.5.0 dated 2026-04-11
DESCRIPTION | 8 MD5 | 255 +- NEWS.md | 56 R/infer-parquet-schema.R | 47 R/parquet-column-types.R | 108 + R/parquet-metadata.R | 13 R/read-parquet.R | 79 R/schema.R | 245 +- R/utils.R | 5 R/write-parquet.R | 36 configure | 16 inst/WORDLIST | 4 man/infer_parquet_schema.Rd | 2 man/nanoparquet-package.Rd | 1 man/nanoparquet-types.Rd | 23 man/parquet_options.Rd | 2 man/parquet_schema.Rd | 12 man/read_parquet_info.Rd | 3 man/read_parquet_metadata.Rd | 4 man/read_parquet_page.Rd | 2 man/read_parquet_schema.Rd | 4 man/rle_decode_int.Rd | 4 man/rle_encode_int.Rd | 4 man/write_parquet.Rd | 4 src/Makevars.in | 31 src/RParquetOutFile.cpp | 450 +++- src/RParquetOutFile.h | 44 src/RParquetReader.cpp | 161 + src/RParquetReader.h | 18 src/arrow-schema.cpp | 15 src/cpp-utils.cpp | 104 - src/dictionary-encoding.cpp | 141 + src/encodings.cpp | 2 src/lib/ParquetOutFile.cpp | 303 ++- src/lib/ParquetOutFile.h | 69 src/lib/ParquetReader.cpp | 277 ++ src/lib/ParquetReader.h | 27 src/parquet/parquet_types.cpp | 952 +++++++++ src/parquet/parquet_types.h | 1010 +--------- src/protect.h | 2 src/r-base64.cpp | 3 src/r-nanoparquet.h | 19 src/r-utils.cpp | 259 ++ src/read-metadata.cpp | 2 src/read-pages.cpp | 93 src/read2.cpp | 49 src/rwrapper.cpp | 18 src/snappy.cpp | 2 src/test.cpp | 2 src/thrift/TNonCopyable.h | 2 src/thrift/TOutput.cpp | 2 src/thrift/TOutput.h | 4 src/thrift/TToString.h | 8 src/thrift/TUuid.cpp |only src/thrift/TUuid.h |only src/thrift/Thrift.h | 17 src/thrift/async/TConcurrentClientSyncInfo.h | 4 src/thrift/async/TEvhttpClientChannel.cpp | 3 src/thrift/async/TEvhttpServer.cpp | 7 src/thrift/async/TEvhttpServer.h | 2 src/thrift/concurrency/Mutex.h | 1 src/thrift/protocol/TBinaryProtocol.h | 4 src/thrift/protocol/TBinaryProtocol.tcc | 16 src/thrift/protocol/TCompactProtocol.h | 8 src/thrift/protocol/TCompactProtocol.tcc | 86 src/thrift/protocol/TDebugProtocol.cpp | 17 src/thrift/protocol/TDebugProtocol.h | 2 src/thrift/protocol/TEnum.h | 7 src/thrift/protocol/TJSONProtocol.cpp | 20 src/thrift/protocol/TJSONProtocol.h | 4 src/thrift/protocol/TProtocol.h | 48 src/thrift/protocol/TProtocolDecorator.h | 2 src/thrift/protocol/TVirtualProtocol.h | 8 src/thrift/server/TNonblockingServer.cpp | 13 src/thrift/server/TNonblockingServer.h | 3 src/thrift/transport/TBufferTransports.cpp | 9 src/thrift/transport/TBufferTransports.h | 13 src/thrift/transport/TFileTransport.cpp | 6 src/thrift/transport/TFileTransport.h | 2 src/thrift/transport/THttpServer.cpp | 2 src/thrift/transport/TPipeServer.cpp | 4 src/thrift/transport/TSSLServerSocket.cpp | 2 src/thrift/transport/TSSLSocket.cpp | 13 src/thrift/transport/TSSLSocket.h | 3 src/thrift/transport/TServerSocket.cpp | 2 src/thrift/transport/TSocket.cpp | 2 src/thrift/transport/TWebSocketServer.h | 2 src/thrift/windows/Operators.h | 5 src/thrift/windows/OverlappedSubmissionThread.h | 4 src/thrift/windows/SocketPair.cpp | 2 src/thrift/windows/Sync.h | 10 src/thrift/windows/TWinsockSingleton.h | 2 src/write2.cpp | 36 tests/testthat/_snaps/append-parquet.md |only tests/testthat/_snaps/infer-parquet-schema.md | 56 tests/testthat/_snaps/list.md |only tests/testthat/_snaps/parquet-metadata.md | 399 ++- tests/testthat/_snaps/parquet-schema.md | 93 tests/testthat/_snaps/read-parquet-2.md | 192 - 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Title: Tools for Parsing, Manipulating, and Graphing Taxonomic
Abundance Data
Description: Reads, plots, and manipulates large
taxonomic data sets, like those generated from modern high-throughput
sequencing, such as metabarcoding (i.e. amplification metagenomics, 16S
metagenomics, etc). It provides a tree-based visualization called "heat
trees" used to depict statistics for every taxon in a taxonomy using
color and size. It also provides various functions to do common tasks in
microbiome bioinformatics on data in the 'taxmap' format defined by the
'taxa' package. The 'metacoder' package is described in the publication
by Foster et al. (2017) <doi:10.1371/journal.pcbi.1005404>.
Author: Zachary Foster [aut, cre],
Niklaus Grunwald [ths],
Kamil Slowikowski [ctb],
Scott Chamberlain [ctb],
Rob Gilmore [ctb]
Maintainer: Zachary Foster <zacharyfoster1989@gmail.com>
This is a re-admission after prior archival of version 0.3.8 dated 2025-02-11
Diff between metacoder versions 0.3.8 dated 2025-02-11 and 0.3.9 dated 2026-04-11
metacoder-0.3.8/metacoder/R/startup.R |only metacoder-0.3.8/metacoder/man/dot-onAttach.Rd |only metacoder-0.3.8/metacoder/man/startup_msg.Rd |only metacoder-0.3.9/metacoder/DESCRIPTION | 12 metacoder-0.3.9/metacoder/MD5 | 43 +- metacoder-0.3.9/metacoder/NAMESPACE | 1 metacoder-0.3.9/metacoder/NEWS.md | 4 metacoder-0.3.9/metacoder/R/as_phyloseq.R | 16 metacoder-0.3.9/metacoder/R/calculations--differential_abundance.R | 55 +-- metacoder-0.3.9/metacoder/R/calculations.R | 2 metacoder-0.3.9/metacoder/R/parsers.R | 25 - metacoder-0.3.9/metacoder/R/primersearch.R | 171 +++++----- metacoder-0.3.9/metacoder/R/read_fasta.R | 10 metacoder-0.3.9/metacoder/R/sequence_download.R | 23 - metacoder-0.3.9/metacoder/build/vignette.rds |binary metacoder-0.3.9/metacoder/man/as_phyloseq.Rd | 16 metacoder-0.3.9/metacoder/man/calc_diff_abund_deseq2.Rd | 55 +-- metacoder-0.3.9/metacoder/man/ncbi_taxon_sample.Rd | 23 - metacoder-0.3.9/metacoder/man/parse_phyloseq.Rd | 25 - metacoder-0.3.9/metacoder/man/primersearch.Rd | 59 +-- metacoder-0.3.9/metacoder/man/primersearch_is_installed.Rd | 5 metacoder-0.3.9/metacoder/man/primersearch_raw.Rd | 104 +++--- metacoder-0.3.9/metacoder/tests/testthat/test--calculations.R | 4 metacoder-0.3.9/metacoder/tests/testthat/test--parsers_and_writers.R | 4 24 files changed, 337 insertions(+), 320 deletions(-)
Title: Read Spectrometric Data and Metadata
Description: Parse various reflectance/transmittance/absorbance spectra file
formats to extract spectral data and metadata, as described in Gruson, White
& Maia (2019) <doi:10.21105/joss.01857>. Among other formats, it can import
files from 'Avantes' <https://www.avantes.com/>, 'CRAIC'
<https://www.microspectra.com/>, and 'OceanOptics'/'OceanInsight'
<https://www.oceanoptics.com/> brands.
Author: Hugo Gruson [cre, aut, cph] ,
Rafael Maia [aut, cph] ,
Thomas White [aut, cph] ,
Kotya Karapetyan [ctb, cph] )
Maintainer: Hugo Gruson <hugo.gruson+R@normalesup.org>
Diff between lightr versions 1.9.0 dated 2025-07-21 and 2.0.0 dated 2026-04-11
lightr-1.9.0/lightr/inst/testdata/compare/Avantes/1904090M1_0007.Raw8 |only lightr-1.9.0/lightr/inst/testdata/compare/Avantes/1904090M1_0007_1904090M1.TXT |only lightr-1.9.0/lightr/man/lr_parse_jaz.Rd |only lightr-1.9.0/lightr/man/lr_parse_jdx.Rd |only lightr-1.9.0/lightr/man/lr_parse_procspec.Rd |only lightr-1.9.0/lightr/man/lr_parse_spc.Rd |only lightr-1.9.0/lightr/man/lr_parse_trm.Rd |only lightr-1.9.0/lightr/man/lr_parse_ttt.Rd |only lightr-2.0.0/lightr/DESCRIPTION | 10 lightr-2.0.0/lightr/MD5 | 103 +++++---- lightr-2.0.0/lightr/NAMESPACE | 15 + lightr-2.0.0/lightr/NEWS.md | 24 ++ lightr-2.0.0/lightr/R/convert_tocsv.R | 36 +-- lightr-2.0.0/lightr/R/deprecated.R |only lightr-2.0.0/lightr/R/dispatch_parser.R | 29 +- lightr-2.0.0/lightr/R/endian_linter.R | 37 ++- lightr-2.0.0/lightr/R/get_metadata.R | 26 +- lightr-2.0.0/lightr/R/get_spec.R | 36 +-- lightr-2.0.0/lightr/R/parse_avantes_binary.R | 102 +++++++-- lightr-2.0.0/lightr/R/parse_avantes_converted.R | 30 +- lightr-2.0.0/lightr/R/parse_csv.R | 8 lightr-2.0.0/lightr/R/parse_generic.R | 11 - lightr-2.0.0/lightr/R/parse_jdx.R | 12 - lightr-2.0.0/lightr/R/parse_oceanoptics_converted.R | 46 ++-- lightr-2.0.0/lightr/R/parse_procspec.R | 12 - lightr-2.0.0/lightr/R/parse_spc.R | 14 + lightr-2.0.0/lightr/R/utils.R | 5 lightr-2.0.0/lightr/README.md | 108 +++++----- lightr-2.0.0/lightr/build/partial.rdb |binary lightr-2.0.0/lightr/build/vignette.rds |binary lightr-2.0.0/lightr/inst/WORDLIST | 9 lightr-2.0.0/lightr/inst/doc/batch_import.html | 7 lightr-2.0.0/lightr/inst/doc/design-principles.Rmd | 4 lightr-2.0.0/lightr/inst/doc/design-principles.html | 7 lightr-2.0.0/lightr/inst/doc/renormalise.R | 4 lightr-2.0.0/lightr/inst/doc/renormalise.Rmd | 4 lightr-2.0.0/lightr/inst/doc/renormalise.html | 14 - lightr-2.0.0/lightr/inst/doc/true_example.html | 11 - lightr-2.0.0/lightr/inst/testdata/compare/Avantes/30849.RFL8 |only lightr-2.0.0/lightr/inst/testdata/compare/Avantes/30849.csv |only lightr-2.0.0/lightr/inst/testdata/compare/rfl8x |only lightr-2.0.0/lightr/inst/testdata_sources.txt | 4 lightr-2.0.0/lightr/man/lr_parse_avantes_trm.Rd |only lightr-2.0.0/lightr/man/lr_parse_avantes_ttt.Rd |only lightr-2.0.0/lightr/man/lr_parse_craic_spc.Rd |only lightr-2.0.0/lightr/man/lr_parse_oceanoptics_jaz.Rd |only lightr-2.0.0/lightr/man/lr_parse_oceanoptics_jdx.Rd |only lightr-2.0.0/lightr/man/lr_parse_oceanoptics_procspec.Rd |only lightr-2.0.0/lightr/tests/testthat/_snaps/metadata.md | 57 ++--- lightr-2.0.0/lightr/tests/testthat/_snaps/parsers.md | 56 ++--- lightr-2.0.0/lightr/tests/testthat/test-endian_linter.R |only lightr-2.0.0/lightr/tests/testthat/test_compare_official.R | 56 +++++ lightr-2.0.0/lightr/tests/testthat/test_dispatch.R | 16 - lightr-2.0.0/lightr/tests/testthat/test_parsers.R | 63 +++-- lightr-2.0.0/lightr/vignettes/design-principles.Rmd | 4 lightr-2.0.0/lightr/vignettes/renormalise.Rmd | 4 56 files changed, 607 insertions(+), 377 deletions(-)
Title: Categorical Regression Splines
Description: Regression splines that handle a mix of continuous and categorical (discrete) data often encountered in applied settings. I would like to gratefully acknowledge support from the Natural Sciences and Engineering Research Council of Canada (NSERC, <https://www.nserc-crsng.gc.ca>), the Social Sciences and Humanities Research Council of Canada (SSHRC, <https://www.sshrc-crsh.gc.ca>), and the Shared Hierarchical Academic Research Computing Network (SHARCNET, <https://www.sharcnet.ca>). We would also like to acknowledge the contributions of the GNU GSL authors. In particular, we adapt the GNU GSL B-spline routine gsl_bspline.c adding automated support for quantile knots (in addition to uniform knots), providing missing functionality for derivatives, and for extending the splines beyond their endpoints.
Author: Jeffrey S. Racine [aut, cre],
Zhenghua Nie [aut],
Brian D. Ripley [ctb]
Maintainer: Jeffrey S. Racine <racinej@mcmaster.ca>
Diff between crs versions 0.15-39 dated 2026-01-29 and 0.15-41 dated 2026-04-11
crs-0.15-39/crs/R/console.R |only crs-0.15-39/crs/R/np.regression.glp.R |only crs-0.15-39/crs/demo/glpreg_npRmpi.R |only crs-0.15-39/crs/inst/doc/crs.R |only crs-0.15-39/crs/inst/doc/crs.Rnw |only crs-0.15-39/crs/inst/doc/crs.pdf |only crs-0.15-39/crs/inst/doc/crs_faq.Rnw |only crs-0.15-39/crs/inst/doc/crs_faq.pdf |only crs-0.15-39/crs/inst/doc/spline_primer.R |only crs-0.15-39/crs/inst/doc/spline_primer.Rnw |only crs-0.15-39/crs/inst/doc/spline_primer.pdf |only crs-0.15-39/crs/man/npglpreg.Rd |only crs-0.15-39/crs/src/nomad_src |only crs-0.15-39/crs/src/sgtelib_src |only crs-0.15-39/crs/vignettes/crs.Rnw |only crs-0.15-39/crs/vignettes/crs.bib |only crs-0.15-39/crs/vignettes/crs_faq.Rnw |only crs-0.15-39/crs/vignettes/crs_faq.bib |only crs-0.15-39/crs/vignettes/spline_primer.Rnw |only crs-0.15-39/crs/vignettes/spline_primer.bib |only crs-0.15-41/crs/CHANGELOG | 39 crs-0.15-41/crs/DESCRIPTION | 15 crs-0.15-41/crs/MD5 | 809 +++++++--- crs-0.15-41/crs/NAMESPACE | 59 crs-0.15-41/crs/R/clsd.R | 473 +++-- crs-0.15-41/crs/R/crs.R | 1620 ++++++++++++-------- crs-0.15-41/crs/R/crscv.R | 84 - crs-0.15-41/crs/R/crsiv.R | 817 ++++++++-- crs-0.15-41/crs/R/crsivderiv.R | 734 ++++++--- crs-0.15-41/crs/R/crssigtest.R | 157 - crs-0.15-41/crs/R/frscv.R | 176 +- crs-0.15-41/crs/R/frscvNOMAD.R | 1008 ++++++------ crs-0.15-41/crs/R/get.option.types.R | 85 - crs-0.15-41/crs/R/glp.model.matrix.R | 248 +-- crs-0.15-41/crs/R/gsl_bspline.R | 304 +-- crs-0.15-41/crs/R/kernel.R | 107 - crs-0.15-41/crs/R/krscv.R | 201 +- crs-0.15-41/crs/R/krscvNOMAD.R | 1176 +++++++------- crs-0.15-41/crs/R/matrix.combns.R | 36 crs-0.15-41/crs/R/mgcv.R | 35 crs-0.15-41/crs/R/nomad.progress.R |only crs-0.15-41/crs/R/print.snomadr.R | 76 crs-0.15-41/crs/R/progress.R |only crs-0.15-41/crs/R/snomadr.R | 418 +++-- crs-0.15-41/crs/R/spline.R | 1692 +++++++++++++++------ crs-0.15-41/crs/R/stepCV.R | 891 +++++------ crs-0.15-41/crs/R/util.R | 660 ++++---- crs-0.15-41/crs/R/zzz.R | 21 crs-0.15-41/crs/build/vignette.rds |binary crs-0.15-41/crs/cleanup | 5 crs-0.15-41/crs/demo/00Index | 2 crs-0.15-41/crs/demo/cqrs.R | 4 crs-0.15-41/crs/demo/crsiv.R | 214 +- crs-0.15-41/crs/demo/crsiv_exog.R | 222 +- crs-0.15-41/crs/demo/crsiv_exog_persp.R | 16 crs-0.15-41/crs/demo/radial_rgl.R | 14 crs-0.15-41/crs/demo/sine_rgl.R | 16 crs-0.15-41/crs/demo/spline.R | 1692 +++++++++++++++------ crs-0.15-41/crs/inst/doc/crs_getting_started.R |only crs-0.15-41/crs/inst/doc/crs_getting_started.Rmd |only crs-0.15-41/crs/inst/doc/crs_getting_started.html |only crs-0.15-41/crs/inst/nomad |only crs-0.15-41/crs/man/clsd.Rd | 167 +- crs-0.15-41/crs/man/crs-package.Rd | 5 crs-0.15-41/crs/man/crs.Rd | 319 ++- crs-0.15-41/crs/man/crsiv.Rd | 122 - crs-0.15-41/crs/man/crsivderiv.Rd | 121 + crs-0.15-41/crs/man/crssigtest.Rd | 12 crs-0.15-41/crs/man/data-Engel95.Rd | 12 crs-0.15-41/crs/man/data-cps71.Rd | 18 crs-0.15-41/crs/man/data-wage1.Rd | 34 crs-0.15-41/crs/man/frscv.Rd | 98 - crs-0.15-41/crs/man/frscvNOMAD.Rd | 151 + crs-0.15-41/crs/man/gsl-bs.Rd | 6 crs-0.15-41/crs/man/krscv.Rd | 113 - crs-0.15-41/crs/man/krscvNOMAD.Rd | 184 +- crs-0.15-41/crs/man/snomadr.Rd | 37 crs-0.15-41/crs/src/Makevars | 505 ++++++ crs-0.15-41/crs/src/RuniqueCombs.c | 103 + crs-0.15-41/crs/src/bspline.c | 8 crs-0.15-41/crs/src/crs_init.c | 12 crs-0.15-41/crs/src/gsl_bspline.c | 150 + crs-0.15-41/crs/src/hat_diag.c |only crs-0.15-41/crs/src/nomad4_src |only crs-0.15-41/crs/src/snomadr.cpp | 1757 +++++++++++----------- crs-0.15-41/crs/src/snomadr.h | 129 - crs-0.15-41/crs/tools |only crs-0.15-41/crs/vignettes/crs_getting_started.Rmd |only 88 files changed, 11212 insertions(+), 6977 deletions(-)
Title: Reparameterized Regression Models
Description: Provides estimation and data generation tools for several new regression models,
including the gamma, beta, inverse gamma and beta prime distributions. These models can be
parameterized based on the mean, median, mode, geometric mean and harmonic mean, as
specified by the user.
For details, see Bourguignon and Gallardo (2025a) <doi:10.1016/j.chemolab.2025.105382> and
Bourguignon and Gallardo (2025b) <doi:10.1111/stan.70007>.
Author: Diego Gallardo [aut, cre],
Marcelo Bourguignon [aut],
Marcia Brandao [aut]
Maintainer: Diego Gallardo <dgallardo@ubiobio.cl>
Diff between rregm versions 1.0 dated 2026-01-28 and 1.1 dated 2026-04-10
DESCRIPTION | 6 +++--- INDEX | 1 + MD5 | 19 +++++++++++++------ NAMESPACE | 7 ++++--- NEWS.md |only R/dRLN.R |only R/fit.RLN.R |only R/pRLN.R |only R/qRLN.R |only R/rRLN.R |only R/summary.rregm.R | 46 ++++++++++++++++++++++++---------------------- man/RGA.Rd | 6 +++--- man/RLN.Rd |only man/tools.rregm.Rd | 3 ++- 14 files changed, 50 insertions(+), 38 deletions(-)
Title: Highlight Conserved Edits Across Versions of a Document
Description: Input multiple versions of a source document,
and receive HTML code for a highlighted version of the source document
indicating the frequency of occurrence of phrases in the different versions.
This method is described in Chapter 3 of
Rogers (2024) <https://digitalcommons.unl.edu/dissertations/AAI31240449/>.
Author: Center for Statistics and Applications in Forensic Evidence [aut, cph,
fnd],
Rachel Rogers [aut, cre] ,
Susan VanderPlas [aut]
Maintainer: Rachel Rogers <rrogers.rpackages@gmail.com>
Diff between highlightr versions 1.2.0 dated 2025-10-18 and 2.0.0 dated 2026-04-10
highlightr-1.2.0/highlightr/R/collocate_comments.R |only highlightr-1.2.0/highlightr/R/collocate_comments_fuzzy.R |only highlightr-1.2.0/highlightr/R/token_comments.R |only highlightr-1.2.0/highlightr/R/token_transcript.R |only highlightr-1.2.0/highlightr/R/transcript_frequency.R |only highlightr-1.2.0/highlightr/data/comment_example.rda |only highlightr-1.2.0/highlightr/data/transcript_example.rda |only highlightr-1.2.0/highlightr/man/collocate_comments.Rd |only highlightr-1.2.0/highlightr/man/collocate_comments_fuzzy.Rd |only highlightr-1.2.0/highlightr/man/comment_example.Rd |only highlightr-1.2.0/highlightr/man/token_comments.Rd |only highlightr-1.2.0/highlightr/man/token_transcript.Rd |only highlightr-1.2.0/highlightr/man/transcript_example.Rd |only highlightr-1.2.0/highlightr/man/transcript_frequency.Rd |only highlightr-1.2.0/highlightr/tests/testthat/test-collocate_comments.R |only highlightr-1.2.0/highlightr/tests/testthat/test-collocate_comments_fuzzy.R |only highlightr-1.2.0/highlightr/tests/testthat/test-token_comments.R |only highlightr-1.2.0/highlightr/tests/testthat/test-token_transcript.R |only highlightr-1.2.0/highlightr/tests/testthat/test-transcript_frequency.R |only highlightr-2.0.0/highlightr/DESCRIPTION | 10 highlightr-2.0.0/highlightr/MD5 | 62 highlightr-2.0.0/highlightr/NAMESPACE | 6 highlightr-2.0.0/highlightr/NEWS.md | 11 highlightr-2.0.0/highlightr/R/collocation_frequency.R |only highlightr-2.0.0/highlightr/R/collocation_plot.R | 41 highlightr-2.0.0/highlightr/R/data.R | 25 highlightr-2.0.0/highlightr/R/highlighted_text.R | 16 highlightr-2.0.0/highlightr/README.md | 23 highlightr-2.0.0/highlightr/data/notepad_example.rda |only highlightr-2.0.0/highlightr/inst/doc/highlightr.R | 63 highlightr-2.0.0/highlightr/inst/doc/highlightr.Rmd | 107 - highlightr-2.0.0/highlightr/inst/doc/highlightr.html | 435 +++-- highlightr-2.0.0/highlightr/inst/doc/wikipedia-highlighter.R | 43 highlightr-2.0.0/highlightr/inst/doc/wikipedia-highlighter.Rmd | 54 highlightr-2.0.0/highlightr/inst/doc/wikipedia-highlighter.html | 785 ++++------ highlightr-2.0.0/highlightr/man/collocation_frequency.Rd |only highlightr-2.0.0/highlightr/man/collocation_plot.Rd | 34 highlightr-2.0.0/highlightr/man/highlighted_text.Rd | 16 highlightr-2.0.0/highlightr/man/notepad_example.Rd |only highlightr-2.0.0/highlightr/tests/testthat/test-collocation_frequency.R |only highlightr-2.0.0/highlightr/tests/testthat/test-collocation_plot.R | 69 highlightr-2.0.0/highlightr/tests/testthat/test-highlighted_text.R | 57 highlightr-2.0.0/highlightr/vignettes/highlightr.Rmd | 107 - highlightr-2.0.0/highlightr/vignettes/wikipedia-highlighter.Rmd | 54 44 files changed, 944 insertions(+), 1074 deletions(-)
Title: Descriptive Statistics, Summary Tables, and Data Management
Tools
Description: Provides tools for descriptive data analysis,
variable inspection, data management, and tabulation workflows in 'R'.
Summarizes variable metadata, labels, classes, missing values, and
representative values, with support for readable frequency tables,
cross-tabulations, association measures for contingency tables
(Cramer's V, Phi, Goodman-Kruskal Gamma, Kendall's Tau-b, Somers' D,
and others), categorical and continuous summary tables, and
model-based bivariate tables for continuous outcomes, including
APA-style reporting outputs. Includes helpers for interactive
codebooks, variable label extraction, clipboard export, and row-wise
descriptive summaries. Designed to make descriptive analysis and
reporting faster, clearer, and easier to work with in practice.
Author: Amal Tawfik [aut, cre, cph]
Maintainer: Amal Tawfik <amal.tawfik@hesav.ch>
Diff between spicy versions 0.7.0 dated 2026-03-30 and 0.8.0 dated 2026-04-10
spicy-0.7.0/spicy/man/figures/README-pressure-1.png |only spicy-0.7.0/spicy/man/figures/logo_dragon.png |only spicy-0.7.0/spicy/man/figures/logo_old.png |only spicy-0.7.0/spicy/man/figures/varlist_1.png |only spicy-0.7.0/spicy/man/figures/varlist_2.png |only spicy-0.8.0/spicy/DESCRIPTION | 13 spicy-0.8.0/spicy/MD5 | 115 spicy-0.8.0/spicy/NAMESPACE | 2 spicy-0.8.0/spicy/NEWS.md | 16 spicy-0.8.0/spicy/R/assoc.R | 2 spicy-0.8.0/spicy/R/count_n.R | 30 spicy-0.8.0/spicy/R/cross_tab.R | 15 spicy-0.8.0/spicy/R/freq.R | 14 spicy-0.8.0/spicy/R/freq_print.R | 1 spicy-0.8.0/spicy/R/spicy_tables.R | 1 spicy-0.8.0/spicy/R/table_categorical_print.R | 1 spicy-0.8.0/spicy/R/table_continuous.R | 202 spicy-0.8.0/spicy/R/table_continuous_lm.R |only spicy-0.8.0/spicy/R/table_continuous_lm_print.R |only spicy-0.8.0/spicy/R/table_continuous_print.R | 9 spicy-0.8.0/spicy/README.md | 45 spicy-0.8.0/spicy/build/vignette.rds |binary spicy-0.8.0/spicy/inst/doc/spicy.R | 24 spicy-0.8.0/spicy/inst/doc/spicy.Rmd | 23 spicy-0.8.0/spicy/inst/doc/spicy.html | 701 spicy-0.8.0/spicy/inst/doc/summary-tables-reporting.R | 148 spicy-0.8.0/spicy/inst/doc/summary-tables-reporting.Rmd | 68 spicy-0.8.0/spicy/inst/doc/summary-tables-reporting.html | 2622 spicy-0.8.0/spicy/inst/doc/table-categorical.R | 190 spicy-0.8.0/spicy/inst/doc/table-categorical.Rmd | 20 spicy-0.8.0/spicy/inst/doc/table-categorical.html | 4889 spicy-0.8.0/spicy/inst/doc/table-continuous-lm.R |only spicy-0.8.0/spicy/inst/doc/table-continuous-lm.Rmd |only spicy-0.8.0/spicy/inst/doc/table-continuous-lm.html |only spicy-0.8.0/spicy/inst/doc/table-continuous.R | 52 spicy-0.8.0/spicy/inst/doc/table-continuous.Rmd | 22 spicy-0.8.0/spicy/inst/doc/table-continuous.html | 1751 spicy-0.8.0/spicy/inst/doc/variable-exploration.R | 20 spicy-0.8.0/spicy/inst/doc/variable-exploration.Rmd | 6 spicy-0.8.0/spicy/inst/doc/variable-exploration.html |76565 ---------- spicy-0.8.0/spicy/man/count_n.Rd | 30 spicy-0.8.0/spicy/man/cross_tab.Rd | 5 spicy-0.8.0/spicy/man/figures/logo.png |binary spicy-0.8.0/spicy/man/figures/logo.svg |only spicy-0.8.0/spicy/man/figures/logo_old_last.png |only spicy-0.8.0/spicy/man/freq.Rd | 14 spicy-0.8.0/spicy/man/print.spicy_assoc_detail.Rd | 1 spicy-0.8.0/spicy/man/print.spicy_assoc_table.Rd | 1 spicy-0.8.0/spicy/man/print.spicy_categorical_table.Rd | 1 spicy-0.8.0/spicy/man/print.spicy_continuous_lm_table.Rd |only spicy-0.8.0/spicy/man/print.spicy_continuous_table.Rd | 1 spicy-0.8.0/spicy/man/print.spicy_cross_table.Rd | 1 spicy-0.8.0/spicy/man/print.spicy_cross_table_list.Rd |only spicy-0.8.0/spicy/man/print.spicy_freq_table.Rd | 1 spicy-0.8.0/spicy/man/spicy-package.Rd | 2 spicy-0.8.0/spicy/man/spicy_tables.Rd | 1 spicy-0.8.0/spicy/man/table_continuous.Rd | 166 spicy-0.8.0/spicy/man/table_continuous_lm.Rd |only spicy-0.8.0/spicy/tests/testthat/test-table_continuous.R | 38 spicy-0.8.0/spicy/tests/testthat/test-table_continuous_lm.R |only spicy-0.8.0/spicy/tools/coverage_table_continuous_lm.R |only spicy-0.8.0/spicy/tools/coverage_table_continuous_lm_probes.R |only spicy-0.8.0/spicy/vignettes/spicy.Rmd | 23 spicy-0.8.0/spicy/vignettes/summary-tables-reporting.Rmd | 68 spicy-0.8.0/spicy/vignettes/table-categorical.Rmd | 20 spicy-0.8.0/spicy/vignettes/table-continuous-lm.Rmd |only spicy-0.8.0/spicy/vignettes/table-continuous.Rmd | 22 spicy-0.8.0/spicy/vignettes/variable-exploration.Rmd | 6 68 files changed, 1384 insertions(+), 86584 deletions(-)
Title: Penalised Regression with Multiple Sets of Prior Effects
('Transfer Learning')
Description: Improves the predictive performance of ridge and lasso regression exploiting one or more sources of prior information on the importance and direction of effects (Rauschenberger and others 2023, <doi:10.1093/bioinformatics/btad680>). For running the vignette (optional), install 'fwelnet' and 'ecpc' from <https://github.com/kjytay/fwelnet> and <https://github.com/Mirrelijn/ecpc>, respectively.
Author: Armin Rauschenberger [aut, cre]
Maintainer: Armin Rauschenberger <armin.rauschenberger@uni.lu>
Diff between transreg versions 1.0.5 dated 2025-07-26 and 1.0.6 dated 2026-04-10
DESCRIPTION | 8 MD5 | 12 R/functions.R | 15 build/partial.rdb |binary build/vignette.rds |binary inst/doc/analysis.R | 1450 ++++++++++++++++++++++++------------------------- inst/doc/analysis.html | 206 ++---- 7 files changed, 833 insertions(+), 858 deletions(-)
Title: Regression under Interference in Connected Populations
Description: An implementation of generalized linear models (GLMs) for studying relationships among attributes in connected populations, where responses of connected units can be dependent, as introduced by Fritz et al. (2025) <doi:10.1080/01621459.2025.2565851>. 'igml' extends GLMs for independent responses to dependent responses and can be used for studying spillover in connected populations and other network-mediated phenomena.
Author: Cornelius Fritz [aut, cre],
Michael Schweinberger [aut]
Maintainer: Cornelius Fritz <corneliusfritz2010@gmail.com>
Diff between iglm versions 1.2.2 dated 2026-03-30 and 1.2.3 dated 2026-04-10
DESCRIPTION | 8 +-- MD5 | 8 +-- inst/include/iglm/xz_class.h | 4 + src/change_statistics.cpp | 106 +++++++++++++++++++++++++++++++------------ src/iglm_classes.cpp | 7 ++ 5 files changed, 96 insertions(+), 37 deletions(-)
Title: Bayesian Analysis of Dynamic Generalized Linear Models
Description: Provide routines for filtering and smoothing, forecasting, sampling and Bayesian analysis of Dynamic Generalized Linear Models using the methodology described in Alves et al. (2024)<doi:10.48550/arXiv.2201.05387> and dos Santos Jr. et al. (2024)<doi:10.48550/arXiv.2403.13069>.
Author: Silvaneo dos Santos Jr. [aut, cre],
Mariane Branco Alves [aut],
Helio dos Santos Migon [aut]
Maintainer: Silvaneo dos Santos Jr. <silvaneojunior@utexas.edu>
Diff between kDGLM versions 1.2.12 dated 2026-02-04 and 1.2.14 dated 2026-04-10
DESCRIPTION | 8 - MD5 | 55 +++++----- NAMESPACE | 2 R/func_helper.R | 2 R/main.R | 16 +-- R/methods.R | 2 R/plot_helper.R | 57 ++++++++--- R/structure_helper.R | 77 +++++++++++---- R/summarize.R | 4 build/partial.rdb |binary inst/doc/example1.R | 2 inst/doc/example1.Rmd | 2 inst/doc/example1.html | 236 ++++++++++++++++++++++------------------------ inst/doc/fitting.R | 8 - inst/doc/fitting.Rmd | 8 - inst/doc/fitting.html | 8 - inst/doc/intro.html | 12 +- inst/doc/outcomes.html | 2 man/create.multi.block.Rd |only man/ffs_block.Rd | 2 man/harmonic_block.Rd | 2 man/polynomial_block.Rd | 2 man/print.fitted_dlm.Rd | 2 man/regression_block.Rd | 2 man/summary.fitted_dlm.Rd | 2 man/tf_block.Rd | 12 ++ man/var_decomp.Rd | 2 vignettes/example1.Rmd | 2 vignettes/fitting.Rmd | 8 - 29 files changed, 318 insertions(+), 219 deletions(-)
Title: A 'recipes' Extension for Persistent Homology and Its
Vectorizations
Description: Topological data analytic methods in machine learning rely on
vectorizations of the persistence diagrams that encode persistent
homology, as surveyed by Ali &al (2000)
<doi:10.48550/arXiv.2212.09703>. Persistent homology can be computed
using 'TDA' and 'ripserr' and vectorized using 'TDAvec'. The
Tidymodels package collection modularizes machine learning in R for
straightforward extensibility; see Kuhn & Silge (2022,
ISBN:978-1-4920-9644-3). These 'recipe' steps and 'dials' tuners make
efficient algorithms for computing and vectorizing persistence
diagrams available for Tidymodels workflows.
Author: Jason Cory Brunson [cre, aut]
Maintainer: Jason Cory Brunson <cornelioid@gmail.com>
Diff between tdarec versions 0.2.0 dated 2025-06-20 and 0.2.1 dated 2026-04-10
DESCRIPTION | 8 MD5 | 23 NEWS.md | 6 R/param-blur-sigmas.R | 4 R/param-hom-degree.R | 4 R/vpd-finalizers.R | 6 README.md | 97 build/vignette.rds |binary inst/doc/hyperparameter-tuning.Rmd | 218 + inst/doc/hyperparameter-tuning.html | 1482 +++++------- vignettes/hyperparameter-tuning.Rmd | 218 + vignettes/vignette-parameter-plot-of-tuning-results-1.png |only vignettes/vignette-performance-plot-of-tuning-results-1.png |only vignettes/vignette-volcano-persistence-1.png |only 14 files changed, 976 insertions(+), 1090 deletions(-)
Title: A Lightweight, Flexible, and Fast Data Validation Package that
Can Handle All Sizes of Data
Description: Allows you to define rules which can be used to verify a given
dataset.
The package acts as a thin wrapper around more powerful data packages such
as 'dplyr', 'data.table', 'arrow', and 'DBI' ('SQL'), which do the heavy lifting.
Author: David Zimmermann-Kollenda [aut, cre],
Beniamino Green [ctb]
Maintainer: David Zimmermann-Kollenda <david_j_zimmermann@hotmail.com>
Diff between dataverifyr versions 0.1.8 dated 2024-01-10 and 0.1.11 dated 2026-04-10
DESCRIPTION | 12 LICENSE | 4 MD5 | 70 - NAMESPACE | 48 NEWS.md | 76 - R/check_data.R | 640 +++++----- R/data_column.R |only R/describe.R |only R/filters.R | 179 +- R/im-export.R | 156 +- R/misc.R | 100 - R/rule.R | 294 ++-- R/ruleset_construction.R | 105 - R/sample_data.R |only R/visualization.R | 220 +-- R/zzz.R | 14 README.md | 1848 ++++++++++++++++++----------- man/bind_rules.Rd | 36 man/check_data.Rd | 127 + man/data_column.Rd |only man/dataverifyr_plus.Rd | 54 man/describe.Rd |only man/detect_backend.Rd | 55 man/figures/README-plotres-1.png |binary man/figures/README-taxi3-1.png |binary man/filter_fails.Rd | 78 - man/reference_rule.Rd |only man/rule.Rd | 132 +- man/ruleset.Rd | 112 + man/sample_data.Rd |only man/write_rules.Rd | 74 - tests/testthat.R | 24 tests/testthat/test-check_data.R | 601 ++++----- tests/testthat/test-describe.R |only tests/testthat/test-detect_backend.R | 145 +- tests/testthat/test-features-v1.R |only tests/testthat/test-filters.R | 118 - tests/testthat/test-im-export.R | 182 +- tests/testthat/test-rule.R | 117 + tests/testthat/test-ruleset_construction.R | 156 +- tests/testthat/test-sample_data.R |only 41 files changed, 3377 insertions(+), 2400 deletions(-)
Title: Transform Models into 'LaTeX' Equations
Description: The goal of 'equatiomatic' is to reduce the pain
associated with writing 'LaTeX' formulas from fitted models. The
primary function of the package, extract_eq(), takes a fitted model
object as its input and returns the corresponding 'LaTeX' code for the
model.
Author: Daniel Anderson [aut] ,
Andrew Heiss [aut] ,
Jay Sumners [aut],
Joshua Rosenberg [ctb] ,
Jonathan Sidi [ctb] ,
Ellis Hughes [ctb] ,
Thomas Fung [ctb] ,
Reza Norouzian [ctb] ,
Indrajeet Patil [ctb] ,
Quinn White [ctb] ,
David Kane [ctb],
Philippe Gros [...truncated...]
Maintainer: Philippe Grosjean <phgrosjean@sciviews.org>
Diff between equatiomatic versions 0.4.4 dated 2025-08-26 and 0.4.8 dated 2026-04-10
DESCRIPTION | 6 +- MD5 | 34 +++++++-------- NEWS.md | 19 ++++++++ R/equation.R | 2 R/extract_eq.R | 31 ++++++++------ R/extract_lhs.R | 83 ++++++++++++++++++++++++--------------- R/print.R | 2 inst/doc/equatiomatic.Rmd | 2 inst/doc/equatiomatic.html | 8 +-- inst/doc/tests_and_coverage.html | 2 inst/doc/tidymodels.Rmd | 2 inst/doc/tidymodels.html | 8 +-- man/extract_eq.Rd | 6 ++ tests/testthat/_snaps/glm.md | 30 ++++++++++++++ tests/testthat/test-glm.R | 29 +++++++++++++ tests/testthat/test-lmerMod.R | 8 ++- vignettes/equatiomatic.Rmd | 2 vignettes/tidymodels.Rmd | 2 18 files changed, 195 insertions(+), 81 deletions(-)
Title: Age Band Decomposition Method for Tree Ring Standardization
Description: Implements the Age Band Decomposition (ABD) method for
standardizing tree ring width data while preserving both low and high frequency
variability. Unlike traditional detrending approaches that can distort long term
growth trends, ABD decomposes ring width series into multiple age classes, detrends
each class separately, and then recombines them to create standardized chronologies.
This approach improves the detection of growth signals linked to past climatic and
environmental factors, making it particularly valuable for dendroecological and
dendroclimatological studies. The package provides functions to perform ABD-based
standardization, compare results with other common methods (e.g., BAI, C method, RCS),
and facilitate the interpretation of growth patterns under current and future climate
variability.
Author: Nicola Puletti [aut, cre] ,
Gianluigi Mazza [aut] ,
Dimitrios Sarris [ctb]
Maintainer: Nicola Puletti <nicola.puletti@crea.gov.it>
Diff between AgeBandDecomposition versions 2.0.0 dated 2026-02-04 and 2.0.1 dated 2026-04-10
DESCRIPTION | 6 +++--- MD5 | 14 ++++++++++---- NEWS.md | 5 +++-- R/import_rwl.R | 9 ++++++++- R/po_test_data.R |only R/rwl_test_data.R |only data/po_test_data.rda |only data/rwl_test_data.rda |only man/import_rwl.Rd | 9 ++++++++- man/po_test_data.Rd |only man/rwl_test_data.Rd |only 11 files changed, 32 insertions(+), 11 deletions(-)
More information about AgeBandDecomposition at CRAN
Permanent link
Title: Seamless Access to World Bank World Development Indicators (WDI)
Description: Access and analyze the World Bank's World Development Indicators
(WDI) using the corresponding API <https://datahelpdesk.worldbank.org/knowledgebase/articles/889392-about-the-indicators-api-documentation>.
WDI provides more than 24,000 country or region-level indicators for various
contexts. 'wbwdi' enables users to download, process and work with WDI
series across multiple countries, aggregates, and time periods.
Author: Christoph Scheuch [aut, cre, cph]
Maintainer: Christoph Scheuch <christoph@tidy-intelligence.com>
Diff between wbwdi versions 1.0.3 dated 2025-11-20 and 1.0.4 dated 2026-04-10
DESCRIPTION | 6 - MD5 | 34 ++++----- NEWS.md | 6 + R/perform_request.R | 7 + R/wdi_get.R | 20 ++--- R/wdi_get_languages.R | 3 README.md | 30 ++++---- build/vignette.rds |binary man/wdi_get.Rd | 2 tests/testthat/tests-perform_request.R | 100 ++++++++++++++++++++++++--- tests/testthat/tests-wdi_get.R | 35 ++++++++- tests/testthat/tests-wdi_get_entities.R | 9 +- tests/testthat/tests-wdi_get_indicators.R | 9 +- tests/testthat/tests-wdi_get_languages.R | 10 ++ tests/testthat/tests-wdi_get_lending_types.R | 9 +- tests/testthat/tests-wdi_get_regions.R | 9 +- tests/testthat/tests-wdi_get_sources.R | 9 +- tests/testthat/tests-wdi_get_topics.R | 9 +- 18 files changed, 223 insertions(+), 84 deletions(-)
Title: A Shiny Dashboard Template Modular System with Chat Bot Support
Description: A template dashboard system with AI agent integrated.
Comes with default themes that can be customized.
Developers can upload modified templates on 'Github', and users can
easily download templates with 'RStudio' project wizard.
The key features of the default template include light and dark theme
switcher, resizing graphs, synchronizing inputs across sessions,
new notification system, fancy progress bars, and card-like flip
panels with back sides, as well as various of 'HTML' tool widgets.
Author: Zhengjia Wang [cph, aut, cre] ,
ColorlibHQ [cph] ,
Bootstrap contributors [ctb] ,
Twitter, Inc [cph] ,
Ivan Sagalaev [ctb, cph] ,
Rene Haas [ctb, cph] ,
Zeno Rocha [ctb, cph]
Maintainer: Zhengjia Wang <dipterix.wang@gmail.com>
Diff between shidashi versions 0.1.8 dated 2026-03-23 and 0.2.0 dated 2026-04-10
shidashi-0.1.8/shidashi/R/shared-session.R |only shidashi-0.1.8/shidashi/inst/builtin-templates/bslib-bare/www/shidashi/js/index.js.map |only shidashi-0.1.8/shidashi/man/javascript-tunnel.Rd |only shidashi-0.1.8/shidashi/man/register_global_reactiveValues.Rd |only shidashi-0.2.0/shidashi/DESCRIPTION | 8 shidashi-0.2.0/shidashi/MD5 | 185 +- shidashi-0.2.0/shidashi/NAMESPACE | 33 shidashi-0.2.0/shidashi/NEWS.md | 78 shidashi-0.2.0/shidashi/R/aaa.R | 188 ++ shidashi-0.2.0/shidashi/R/accordion.R | 22 shidashi-0.2.0/shidashi/R/barebone.R | 88 - shidashi-0.2.0/shidashi/R/card-badge.R |only shidashi-0.2.0/shidashi/R/card-tabset.R | 16 shidashi-0.2.0/shidashi/R/card-tool.R | 40 shidashi-0.2.0/shidashi/R/card.R | 62 shidashi-0.2.0/shidashi/R/chat-helpers.R | 2 shidashi-0.2.0/shidashi/R/chatbot.R | 75 shidashi-0.2.0/shidashi/R/clipboard.R | 16 shidashi-0.2.0/shidashi/R/drawer.R | 8 shidashi-0.2.0/shidashi/R/globals.R | 805 +++++++++- shidashi-0.2.0/shidashi/R/info-box.R | 10 shidashi-0.2.0/shidashi/R/mcp-handler.R | 170 -- shidashi-0.2.0/shidashi/R/mcp-wrapper.R | 413 ++++- shidashi-0.2.0/shidashi/R/menu-item.R | 35 shidashi-0.2.0/shidashi/R/modules.R | 61 shidashi-0.2.0/shidashi/R/notification.R | 8 shidashi-0.2.0/shidashi/R/progress.R | 46 shidashi-0.2.0/shidashi/R/render.R | 34 shidashi-0.2.0/shidashi/R/settings.R | 22 shidashi-0.2.0/shidashi/R/standalone-viewer.R |only shidashi-0.2.0/shidashi/R/stream-viz.R |only shidashi-0.2.0/shidashi/R/stream.R |only shidashi-0.2.0/shidashi/R/ui-adminlte.R | 83 - 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Title: Functional Programming Tools
Description: A complete and consistent functional programming toolkit for
R.
Author: Hadley Wickham [aut, cre] ,
Lionel Henry [aut],
Posit Software, PBC [cph, fnd]
Maintainer: Hadley Wickham <hadley@posit.co>
Diff between purrr versions 1.2.1 dated 2026-01-09 and 1.2.2 dated 2026-04-10
DESCRIPTION | 6 ++-- MD5 | 34 +++++++++++++-------------- NEWS.md | 24 +++++++++++-------- R/modify.R | 4 +-- man/modify.Rd | 3 +- src/cleancall.c | 3 +- src/init.c | 3 ++ src/pluck.c | 37 +++++++++++++---------------- src/utils.c | 39 +++++++++++++++++++++++++++++++ src/utils.h | 6 ++++ tests/testthat/_snaps/every-some-none.md | 3 ++ tests/testthat/_snaps/list-simplify.md | 1 tests/testthat/_snaps/map.md | 2 + tests/testthat/_snaps/map2.md | 2 + tests/testthat/_snaps/modify.md | 3 ++ tests/testthat/_snaps/parallel.md | 3 ++ tests/testthat/_snaps/pmap.md | 1 tests/testthat/test-pluck.R | 6 ++++ 18 files changed, 126 insertions(+), 54 deletions(-)
Title: High-Performance Geocoding using 'photon'
Description: Features unstructured, structured and reverse geocoding using the
'photon' geocoding API <https://photon.komoot.io/>.
Facilitates the setup of local 'photon' instances to enable offline
geocoding.
Author: Jonas Lieth [aut, cre, cph]
Maintainer: Jonas Lieth <jslth@outlook.com>
This is a re-admission after prior archival of version 1.0.0 dated 2026-02-28
Diff between photon versions 1.0.0 dated 2026-02-28 and 1.0.0-1 dated 2026-04-10
DESCRIPTION | 6 +++--- MD5 | 6 +++--- inst/doc/photon.html | 8 ++++---- tests/testthat/test-utils.R | 1 - 4 files changed, 10 insertions(+), 11 deletions(-)
Title: Continuous Norming
Description: A toolbox for continuous norming of psychological and educational tests, supporting regression-based norming where norms can vary as a continuous function of age or another norm predictor. Norms are estimated using Generalized Additive Models for Location, Scale, and Shape (GAMLSS), enabling flexible modelling of the full score distribution in a normative sample. The package supports applications in psychometrics and psychological testing, and includes functions for model selection, reliability estimation, norm calculation, including confidence intervals, and sample size planning. For more details, see Timmerman et al. (2021) <doi:10.1037/met0000348>.
Author: Klazien de Vries [aut] ,
Hannah Heister [aut] ,
Julian Urban [aut] ,
Lieke Voncken [ctb] ,
Marieke Timmerman [aut, cre]
Maintainer: Marieke Timmerman <m.e.timmerman@rug.nl>
Diff between normref versions 0.0.0.1 dated 2025-10-06 and 0.1.1 dated 2026-04-10
normref-0.0.0.1/normref/vignettes/intro_to_normr.html |only normref-0.1.1/normref/DESCRIPTION | 12 normref-0.1.1/normref/MD5 | 28 normref-0.1.1/normref/NAMESPACE | 1 normref-0.1.1/normref/NEWS.md | 14 normref-0.1.1/normref/R/model_selection.R | 122 - normref-0.1.1/normref/R/preprocess.R | 250 +++ normref-0.1.1/normref/build/partial.rdb |binary normref-0.1.1/normref/inst/REFERENCES.bib | 15 normref-0.1.1/normref/inst/doc/intro_to_normref.R | 36 normref-0.1.1/normref/inst/doc/intro_to_normref.Rmd | 62 normref-0.1.1/normref/inst/doc/intro_to_normref.html | 1103 +++++++++-------- normref-0.1.1/normref/inst/extdata |only normref-0.1.1/normref/man/sample_size_poly.Rd |only normref-0.1.1/normref/tests/testthat/test-preprocess.R | 107 + normref-0.1.1/normref/vignettes/intro_to_normref.Rmd | 62 16 files changed, 1251 insertions(+), 561 deletions(-)
Title: Interpreting High Resolution Mass Spectra
Description: High resolution mass spectrometry yields often large data sets of
spectra from compounds which are not present in available libraries. These
spectra need to be annotated and interpreted.
'InterpretMSSpectrum' provides a set of functions to perform such tasks for
Electrospray-Ionization and Atmospheric-Pressure-Chemical-Ionization derived
data in positive and negative ionization mode.
Author: Jan Lisec [aut, cre] ,
Jaeger Carsten [aut]
Maintainer: Jan Lisec <jan.lisec@bam.de>
Diff between InterpretMSSpectrum versions 1.5.2 dated 2025-12-03 and 1.5.3 dated 2026-04-10
DESCRIPTION | 10 - MD5 | 20 +- R/PlotSpec.R | 55 +++++-- R/utils.R |only README.md | 44 ++++- man/PlotSpec.Rd | 29 ++- man/figures/README-exmpl1-1.png |binary man/figures/README-exmpl2-1.png |binary man/figures/README-exmpl4-1.png |only tests/testthat/_snaps/PlotSpec/plotspec-01.svg | 125 +++++++++------- tests/testthat/_snaps/PlotSpec/plotspec-02.svg | 104 +++++++------ tests/testthat/_snaps/findMAIN/findmain-plot-01.svg | 150 +++++++++----------- 12 files changed, 313 insertions(+), 224 deletions(-)
More information about InterpretMSSpectrum at CRAN
Permanent link
Title: Rounded Bar Plots
Description: Creates bar plots with rounded corners using 'ggplot2'.
The code in this package was adapted from a solution provided by
Stack Overflow user 'sthoch' in the following post
<https://stackoverflow.com/questions/62176038/r-ggplot2-bar-chart-with-round-corners-on-top-of-bar>.
Author: Botan Agin [aut, cre, cph]
Maintainer: Botan Agin <aginbotan@gmail.com>
Diff between ggrounded versions 0.0.3 dated 2023-05-11 and 0.1.0 dated 2026-04-10
DESCRIPTION | 14 - MD5 | 41 ++- NAMESPACE | 1 NEWS.md | 8 R/geom-bar-rounded.R | 4 R/geom-col-rounded.R | 63 ++-- R/geom-histogram-rounded.R |only R/utils.R | 127 +++++++++- README.md | 43 +++ man/figures/README-example1-1.png |binary man/figures/README-example2-1.png |binary man/figures/README-example3-1.png |only man/figures/README-example4-1.png |only man/figures/README-unnamed-chunk-4-1.png |only man/figures/logo.png |only man/geom_col_rounded.Rd | 11 man/geom_histogram_rounded.Rd |only tests/testthat/_snaps/geom-bar-rounded/geom-bar-rounded-max.svg |only tests/testthat/_snaps/geom-bar-rounded/geom-bar-rounded.svg | 14 - tests/testthat/_snaps/geom-col-rounded/geom-col-rounded-dense.svg |only tests/testthat/_snaps/geom-col-rounded/geom-col-rounded-max.svg |only tests/testthat/_snaps/geom-col-rounded/geom-col-rounded-negative.svg |only tests/testthat/_snaps/geom-col-rounded/geom-col-rounded-square.svg |only tests/testthat/_snaps/geom-col-rounded/geom-col-rounded.svg | 6 tests/testthat/test-geom-bar-rounded.R | 6 tests/testthat/test-geom-col-rounded.R | 27 ++ tests/testthat/test-geom-histogram-rounded.R |only tests/testthat/test-radius.R |only 28 files changed, 296 insertions(+), 69 deletions(-)
Title: Make 'PICRUSt2' Output Analysis and Visualization Easier
Description: Provides a convenient way to analyze and visualize 'PICRUSt2' output with pre-defined plots and functions. Allows for generating statistical plots about microbiome functional predictions and offers customization options. Features a one-click option for creating publication-level plots, saving time and effort in producing professional-grade figures. Streamlines the 'PICRUSt2' analysis and visualization process. For more details, see Yang et al. (2023) <doi:10.1093/bioinformatics/btad470>.
Author: Chen Yang [aut, cre],
Liangliang Zhang [aut]
Maintainer: Chen Yang <cafferychen7850@gmail.com>
Diff between ggpicrust2 versions 2.5.10 dated 2026-02-12 and 2.5.12 dated 2026-04-10
ggpicrust2-2.5.10/ggpicrust2/tests/testthat/Rplots.pdf |only ggpicrust2-2.5.12/ggpicrust2/DESCRIPTION | 17 ggpicrust2-2.5.12/ggpicrust2/MD5 | 28 ggpicrust2-2.5.12/ggpicrust2/NAMESPACE | 5 ggpicrust2-2.5.12/ggpicrust2/NEWS.md | 20 ggpicrust2-2.5.12/ggpicrust2/R/pathway_daa.R | 18 ggpicrust2-2.5.12/ggpicrust2/R/taxa_contribution.R |only ggpicrust2-2.5.12/ggpicrust2/R/taxa_contribution_viz.R |only ggpicrust2-2.5.12/ggpicrust2/README.md | 1681 +++------- ggpicrust2-2.5.12/ggpicrust2/build/vignette.rds |binary ggpicrust2-2.5.12/ggpicrust2/inst/doc/using_ggpicrust2.R |only ggpicrust2-2.5.12/ggpicrust2/inst/doc/using_ggpicrust2.Rmd |only ggpicrust2-2.5.12/ggpicrust2/inst/doc/using_ggpicrust2.html |only ggpicrust2-2.5.12/ggpicrust2/man/aggregate_taxa_contributions.Rd |only ggpicrust2-2.5.12/ggpicrust2/man/figures/logo.png |only ggpicrust2-2.5.12/ggpicrust2/man/ko_to_go_reference.Rd | 4 ggpicrust2-2.5.12/ggpicrust2/man/read_contrib_file.Rd |only ggpicrust2-2.5.12/ggpicrust2/man/read_strat_file.Rd |only ggpicrust2-2.5.12/ggpicrust2/man/taxa_contribution_bar.Rd |only ggpicrust2-2.5.12/ggpicrust2/man/taxa_contribution_heatmap.Rd |only ggpicrust2-2.5.12/ggpicrust2/tests/testthat/test-taxa_contribution.R |only ggpicrust2-2.5.12/ggpicrust2/vignettes/using_ggpicrust2.Rmd |only 22 files changed, 654 insertions(+), 1119 deletions(-)
Title: Species Trait Data from Around the Web
Description: Species trait data from many sources, including sequence data
from NCBI (<https://www.ncbi.nlm.nih.gov/>), plant traits from BETYdb,
and data from EOL Traitbank and BirdLife International.
Author: David LeBauer [aut, cre] ,
Scott Chamberlain [aut, cph] ,
Zachary Foster [aut],
Ignasi Bartomeus [aut],
Chris Black [aut],
David Harris [aut],
Rupert Collins [ctb]
Maintainer: David LeBauer <dlebauer@gmail.com>
This is a re-admission after prior archival of version 0.5.1 dated 2024-05-17
Diff between traits versions 0.5.1 dated 2024-05-17 and 0.6.0 dated 2026-04-10
traits-0.5.1/traits/R/coral.R |only traits-0.5.1/traits/R/eol_invasive.R |only traits-0.5.1/traits/R/fe_native.R |only traits-0.5.1/traits/R/g_invasive.R |only traits-0.5.1/traits/R/is_native.R |only traits-0.5.1/traits/R/tr_usda.R |only traits-0.5.1/traits/man/coral-defunct.Rd |only traits-0.5.1/traits/man/eol_invasive_-defunct.Rd |only traits-0.5.1/traits/man/fe_native-defunct.Rd |only traits-0.5.1/traits/man/g_invasive-defunct.Rd |only traits-0.5.1/traits/man/is_native-defunct.Rd |only traits-0.5.1/traits/man/tr_usda-defunct.Rd |only traits-0.6.0/traits/DESCRIPTION | 51 +-- traits-0.6.0/traits/MD5 | 82 ++---- traits-0.6.0/traits/NAMESPACE | 11 traits-0.6.0/traits/NEWS.md | 30 ++ traits-0.6.0/traits/R/betydb.R | 270 +++++++++++--------- traits-0.6.0/traits/R/birdlife.R | 32 +- traits-0.6.0/traits/R/caching.R | 5 traits-0.6.0/traits/R/leda.R | 57 ++-- traits-0.6.0/traits/R/ncbi_byid.R | 18 - traits-0.6.0/traits/R/ncbi_byname.R | 92 +++++- traits-0.6.0/traits/R/ncbi_searcher.R | 76 +++-- traits-0.6.0/traits/R/taxa_search.R | 32 ++ traits-0.6.0/traits/R/tr_ernest.R | 19 - traits-0.6.0/traits/R/tr_zanne.R | 19 - traits-0.6.0/traits/R/traitbank.R | 42 +-- traits-0.6.0/traits/R/traits-package.r | 5 traits-0.6.0/traits/README.md | 245 ++++++++++++++---- traits-0.6.0/traits/build/vignette.rds |binary traits-0.6.0/traits/inst/CITATION |only traits-0.6.0/traits/inst/doc/betydb.html | 5 traits-0.6.0/traits/inst/doc/traits.html | 5 traits-0.6.0/traits/man/betydb.Rd | 57 ++-- traits-0.6.0/traits/man/betydb_query.Rd | 41 +-- traits-0.6.0/traits/man/birdlife_habitat.Rd | 15 - traits-0.6.0/traits/man/birdlife_threats.Rd | 15 - traits-0.6.0/traits/man/leda.Rd | 58 ++-- traits-0.6.0/traits/man/ncbi_byid.Rd | 15 - traits-0.6.0/traits/man/ncbi_byname.Rd | 22 + traits-0.6.0/traits/man/ncbi_searcher.Rd | 81 +++--- traits-0.6.0/traits/man/taxa_search.Rd | 9 traits-0.6.0/traits/man/tr_ernest.Rd | 18 - traits-0.6.0/traits/man/tr_zanne.Rd | 18 - traits-0.6.0/traits/man/traitbank.Rd | 37 +- traits-0.6.0/traits/man/traits-package.Rd | 22 - traits-0.6.0/traits/man/traits_cache.Rd | 5 traits-0.6.0/traits/tests/testthat/test-ncbi.R |only traits-0.6.0/traits/tests/testthat/test-traitbank.R | 27 ++ 49 files changed, 962 insertions(+), 574 deletions(-)
Title: 2x2, 3x3 and Nxn Space-Filling Curves
Description: Implementation of all possible forms of 2x2 and 3x3 space-filling curves,
i.e., the generalized forms of the Hilbert curve <https://en.wikipedia.org/wiki/Hilbert_curve>,
the Peano curve <https://en.wikipedia.org/wiki/Peano_curve> and the Peano curve in the
meander type (Figure 5 in <https://eudml.org/doc/141086>). It can generates nxn curves expanded from
any specific level-1 units. It also implements the H-curve and the three-dimensional Hilbert curve.
See <doi:10.48550/arXiv.2412.16962> for more details.
Author: Zuguang Gu [aut, cre]
Maintainer: Zuguang Gu <guzuguang@suat-sz.edu.cn>
Diff between sfcurve versions 1.0.0 dated 2024-09-13 and 1.0.1 dated 2026-04-10
DESCRIPTION | 17 ++++---- LICENSE | 2 - MD5 | 80 ++++++++++++++++++++--------------------- R/hilbert_3d.R | 2 + R/sfc_generator.R | 4 +- inst/doc/sfcurve.Rmd | 2 - inst/doc/sfcurve.html | 8 ++-- man/base_patterns.Rd | 6 +-- man/draw_multiple_curves.Rd | 14 +++---- man/draw_rules.Rd | 2 - man/h_curve.Rd | 17 ++++---- man/hilbert_3d.Rd | 2 + man/level1_unit_orientation.Rd | 14 +++---- man/plot_segments.Rd | 4 +- man/pre_defined_rules.Rd | 12 +++--- man/sfc_3x3_combined.Rd | 10 ++--- man/sfc_4x4_meander.Rd | 16 ++++---- man/sfc_apply.Rd | 12 +++--- man/sfc_base.Rd | 27 ++++++------- man/sfc_expand.Rd | 8 ++-- man/sfc_expand_by_rules.Rd | 12 +++--- man/sfc_flip_unit.Rd | 22 +++++------ man/sfc_generator.Rd | 11 ++--- man/sfc_grob.Rd | 16 ++++---- man/sfc_index.Rd | 20 +++++----- man/sfc_is_compatible.Rd | 10 ++--- man/sfc_level.Rd | 2 - man/sfc_previous_point.Rd | 2 - man/sfc_reduce.Rd | 8 ++-- man/sfc_rules.Rd | 41 ++++++++++----------- man/sfc_segments.Rd | 8 ++-- man/sfc_sequence.Rd | 8 ++-- man/sfc_shape.Rd | 57 +++++++++++++---------------- man/sfc_transformation.Rd | 26 ++++++------- man/sfc_validate.Rd | 4 +- man/sfcurve-package.Rd | 6 +-- man/spacefilling.Rd | 34 +++++++---------- man/standard_curve.Rd | 4 +- man/traverse_path.Rd | 18 ++++----- man/utility.Rd | 12 +++--- vignettes/sfcurve.Rmd | 2 - 41 files changed, 289 insertions(+), 293 deletions(-)
Title: Synthetic Control Changes-in-Changes Estimator
Description: Implements the Changes-in-Changes (CIC) estimator of Athey and
Imbens (2006) <doi:10.1111/j.1468-0262.2006.00668.x> combined with
synthetic control methods. Provides both the continuous CIC estimator
(Theorem 3.1) and the discrete CIC estimator (Theorem 4.1) for
integer-valued outcomes, with analytic and bootstrap inference.
Also provides nonparametric estimation of the entire counterfactual
distribution of outcomes for a treated group, allowing evaluation of
average, quantile, and distributional treatment effects. Synthetic
control weights are constructed via elastic net regularization to
handle settings with many potential control units.
Author: Neil Hwang [aut, cre]
Maintainer: Neil Hwang <neil.hwang@bcc.cuny.edu>
Diff between sccic versions 0.1.0 dated 2026-04-09 and 0.1.1 dated 2026-04-10
DESCRIPTION | 19 MD5 | 24 NEWS.md |only R/cic.R | 43 - R/ecdf_utils.R | 81 ++ inst/doc/sccic-intro.R | 19 inst/doc/sccic-intro.Rmd | 30 inst/doc/sccic-intro.html | 1600 +--------------------------------------------- man/cic.Rd | 16 man/compute_cic_cf.Rd |only man/ecdf_eval_left.Rd |only man/integral_quantile.Rd |only man/sccic-package.Rd | 2 tests/testthat/test-cic.R | 84 ++ vignettes/sccic-intro.Rmd | 30 15 files changed, 349 insertions(+), 1599 deletions(-)
Title: Fitting and Analysing Thermal Performance Curves
Description: Helps to fit thermal performance curves (TPCs). 'rTPC' contains 49 model formulations previously used to fit TPCs and has helper functions to set sensible start parameters, upper and lower parameter limits and estimate parameters useful in downstream analyses, such as cardinal temperatures, maximum rate and optimum temperature. See Padfield et al. (2021) <doi:10.1111/2041-210X.13585>.
Author: Daniel Padfield [aut, cre],
Hannah O'Sullivan [aut],
Francis Windram [aut]
Maintainer: Daniel Padfield <d.padfield@exeter.ac.uk>
Diff between rTPC versions 1.0.4 dated 2023-08-17 and 1.1.0 dated 2026-04-10
rTPC-1.0.4/rTPC/R/lrf_1991.R |only rTPC-1.0.4/rTPC/R/modifiedgaussian_2006.R |only rTPC-1.0.4/rTPC/man/lrf_1991.Rd |only rTPC-1.0.4/rTPC/man/modifiedgaussian_2006.Rd |only rTPC-1.0.4/rTPC/tests/testthat/test-lrf_1991.R |only rTPC-1.0.4/rTPC/tests/testthat/test-modifiedgaussian_2006.R |only rTPC-1.1.0/rTPC/DESCRIPTION | 35 rTPC-1.1.0/rTPC/MD5 | 344 +- rTPC-1.1.0/rTPC/NAMESPACE | 28 rTPC-1.1.0/rTPC/NEWS.md | 32 rTPC-1.1.0/rTPC/R/analytiskontodimas_2004.R |only rTPC-1.1.0/rTPC/R/ashrafi1_2018.R |only rTPC-1.1.0/rTPC/R/ashrafi2_2018.R |only rTPC-1.1.0/rTPC/R/ashrafi3_2018.R |only rTPC-1.1.0/rTPC/R/ashrafi4_2018.R |only rTPC-1.1.0/rTPC/R/ashrafi5_2018.R |only rTPC-1.1.0/rTPC/R/atkin_2005.R |only rTPC-1.1.0/rTPC/R/beta_2012.R | 28 rTPC-1.1.0/rTPC/R/betatypesimplified_2008.R |only rTPC-1.1.0/rTPC/R/boatman_2017.R | 28 rTPC-1.1.0/rTPC/R/briere1.R |only rTPC-1.1.0/rTPC/R/briere1simplified_1999.R |only rTPC-1.1.0/rTPC/R/briere2_1999.R | 26 rTPC-1.1.0/rTPC/R/briere2simplified_1999.R |only rTPC-1.1.0/rTPC/R/briereextended_2021.R |only rTPC-1.1.0/rTPC/R/briereextendedsimplified_2021.R |only rTPC-1.1.0/rTPC/R/calc_params.R | 6 rTPC-1.1.0/rTPC/R/data.R | 2 rTPC-1.1.0/rTPC/R/delong_2017.R | 42 rTPC-1.1.0/rTPC/R/deutsch_2008.R | 29 rTPC-1.1.0/rTPC/R/eubank_1973.R |only rTPC-1.1.0/rTPC/R/flextpc_2024.R |only rTPC-1.1.0/rTPC/R/flinn_1991.R | 24 rTPC-1.1.0/rTPC/R/gaussian_1987.R | 25 rTPC-1.1.0/rTPC/R/gaussianmodified_2006.R |only rTPC-1.1.0/rTPC/R/get_breadth.R | 2 rTPC-1.1.0/rTPC/R/get_ctmax.R | 1 rTPC-1.1.0/rTPC/R/get_ctmin.R | 2 rTPC-1.1.0/rTPC/R/get_e.R | 1 rTPC-1.1.0/rTPC/R/get_eh.R | 1 rTPC-1.1.0/rTPC/R/get_lower_lims.R | 246 - rTPC-1.1.0/rTPC/R/get_model_names.R | 73 rTPC-1.1.0/rTPC/R/get_q10.R | 1 rTPC-1.1.0/rTPC/R/get_rmax.R | 1 rTPC-1.1.0/rTPC/R/get_skewness.R | 1 rTPC-1.1.0/rTPC/R/get_start_vals.R | 264 - rTPC-1.1.0/rTPC/R/get_thermalsafetymargin.R | 2 rTPC-1.1.0/rTPC/R/get_thermaltolerance.R | 2 rTPC-1.1.0/rTPC/R/get_topt.R | 2 rTPC-1.1.0/rTPC/R/get_tpc_as_formula.R |only rTPC-1.1.0/rTPC/R/get_upper_lims.R | 248 - rTPC-1.1.0/rTPC/R/hinshelwood_1947.R | 25 rTPC-1.1.0/rTPC/R/janisch1_1925.R |only rTPC-1.1.0/rTPC/R/janisch2_1925.R |only rTPC-1.1.0/rTPC/R/joehnk_2008.R | 31 rTPC-1.1.0/rTPC/R/johnsonlewin_1946.R | 30 rTPC-1.1.0/rTPC/R/kamykowski_1985.R | 32 rTPC-1.1.0/rTPC/R/lactin2_1995.R | 27 rTPC-1.1.0/rTPC/R/lobry_1991.R |only rTPC-1.1.0/rTPC/R/mitchell_2009.R |only rTPC-1.1.0/rTPC/R/oneill_1972.R | 28 rTPC-1.1.0/rTPC/R/pawar_2018.R | 30 rTPC-1.1.0/rTPC/R/quadratic_2008.R | 21 rTPC-1.1.0/rTPC/R/quickfit_tpc.R |only rTPC-1.1.0/rTPC/R/quickfit_tpc_multi.R |only rTPC-1.1.0/rTPC/R/ratkowsky_1983.R | 25 rTPC-1.1.0/rTPC/R/rezende_2019.R | 26 rTPC-1.1.0/rTPC/R/rosso_1993.R |only rTPC-1.1.0/rTPC/R/sharpeschoolfull_1981.R | 36 rTPC-1.1.0/rTPC/R/sharpeschoolhigh_1981.R | 30 rTPC-1.1.0/rTPC/R/sharpeschoollow_1981.R | 29 rTPC-1.1.0/rTPC/R/spain_1982.R | 25 rTPC-1.1.0/rTPC/R/stinner_1974.R |only rTPC-1.1.0/rTPC/R/taylorsexton_1972.R |only rTPC-1.1.0/rTPC/R/thomas_2012.R | 34 rTPC-1.1.0/rTPC/R/thomas_2017.R | 28 rTPC-1.1.0/rTPC/R/tomlinsonphillips_2015.R |only rTPC-1.1.0/rTPC/R/warrendreyer_2006.R |only rTPC-1.1.0/rTPC/R/weibull_1995.R | 24 rTPC-1.1.0/rTPC/README.md | 50 rTPC-1.1.0/rTPC/build/vignette.rds |binary rTPC-1.1.0/rTPC/inst/doc/adding_models.R |only rTPC-1.1.0/rTPC/inst/doc/adding_models.Rmd |only rTPC-1.1.0/rTPC/inst/doc/adding_models.html |only rTPC-1.1.0/rTPC/inst/doc/bootstrapping_many_curves.R | 237 + rTPC-1.1.0/rTPC/inst/doc/bootstrapping_many_curves.Rmd | 246 + rTPC-1.1.0/rTPC/inst/doc/bootstrapping_many_curves.html | 425 +- rTPC-1.1.0/rTPC/inst/doc/bootstrapping_models.R | 363 +- rTPC-1.1.0/rTPC/inst/doc/bootstrapping_models.Rmd | 369 +- rTPC-1.1.0/rTPC/inst/doc/bootstrapping_models.html | 705 ++-- rTPC-1.1.0/rTPC/inst/doc/fit_many_curves.R | 117 rTPC-1.1.0/rTPC/inst/doc/fit_many_curves.Rmd | 136 rTPC-1.1.0/rTPC/inst/doc/fit_many_curves.html | 196 - rTPC-1.1.0/rTPC/inst/doc/fit_many_models.R | 1597 ++++++++- rTPC-1.1.0/rTPC/inst/doc/fit_many_models.Rmd | 1620 ++++++++- rTPC-1.1.0/rTPC/inst/doc/fit_many_models.html | 1655 ++++++++-- rTPC-1.1.0/rTPC/inst/doc/model_averaging_selection.R | 325 + rTPC-1.1.0/rTPC/inst/doc/model_averaging_selection.Rmd | 336 +- rTPC-1.1.0/rTPC/inst/doc/model_averaging_selection.html | 485 +- rTPC-1.1.0/rTPC/inst/doc/model_weighting.R | 2 rTPC-1.1.0/rTPC/inst/doc/model_weighting.Rmd | 5 rTPC-1.1.0/rTPC/inst/doc/model_weighting.html | 43 rTPC-1.1.0/rTPC/inst/doc/quickfit_parallel.Rmd |only rTPC-1.1.0/rTPC/inst/doc/quickfit_parallel.html |only rTPC-1.1.0/rTPC/inst/doc/rTPC.R | 56 rTPC-1.1.0/rTPC/inst/doc/rTPC.Rmd | 72 rTPC-1.1.0/rTPC/inst/doc/rTPC.html | 168 - rTPC-1.1.0/rTPC/inst/doc/weighted_bootstrapping.R | 10 rTPC-1.1.0/rTPC/inst/doc/weighted_bootstrapping.Rmd | 15 rTPC-1.1.0/rTPC/inst/doc/weighted_bootstrapping.html | 168 - rTPC-1.1.0/rTPC/man/analytiskontodimas_2004.Rd |only rTPC-1.1.0/rTPC/man/ashrafi1_2018.Rd |only rTPC-1.1.0/rTPC/man/ashrafi2_2018.Rd |only rTPC-1.1.0/rTPC/man/ashrafi3_2018.Rd |only rTPC-1.1.0/rTPC/man/ashrafi4_2018.Rd |only rTPC-1.1.0/rTPC/man/ashrafi5_2018.Rd |only rTPC-1.1.0/rTPC/man/atkin_2005.Rd |only rTPC-1.1.0/rTPC/man/bacteria_tpc.Rd | 1 rTPC-1.1.0/rTPC/man/beta_2012.Rd | 1 rTPC-1.1.0/rTPC/man/betatypesimplified_2008.Rd |only rTPC-1.1.0/rTPC/man/boatman_2017.Rd | 1 rTPC-1.1.0/rTPC/man/briere1_1999.Rd |only rTPC-1.1.0/rTPC/man/briere1simplified_1999.Rd |only rTPC-1.1.0/rTPC/man/briere2_1999.Rd | 5 rTPC-1.1.0/rTPC/man/briere2simplified_1999.Rd |only rTPC-1.1.0/rTPC/man/briereextended_2021.Rd |only rTPC-1.1.0/rTPC/man/briereextendedsimplified_2021.Rd |only rTPC-1.1.0/rTPC/man/calc_params.Rd | 5 rTPC-1.1.0/rTPC/man/chlorella_tpc.Rd | 1 rTPC-1.1.0/rTPC/man/delong_2017.Rd | 1 rTPC-1.1.0/rTPC/man/deutsch_2008.Rd | 1 rTPC-1.1.0/rTPC/man/eubank_1973.Rd |only rTPC-1.1.0/rTPC/man/figures/logo.png |only rTPC-1.1.0/rTPC/man/figures/rTPC_hex_sticker.png |only rTPC-1.1.0/rTPC/man/figures/rTPC_pipeline.png |binary rTPC-1.1.0/rTPC/man/figures/rTPC_pipeline_extensions.png |binary rTPC-1.1.0/rTPC/man/flextpc_2024.Rd |only rTPC-1.1.0/rTPC/man/flinn_1991.Rd | 1 rTPC-1.1.0/rTPC/man/gaussian_1987.Rd | 1 rTPC-1.1.0/rTPC/man/gaussianmodified_2006.Rd |only rTPC-1.1.0/rTPC/man/get_breadth.Rd | 1 rTPC-1.1.0/rTPC/man/get_ctmax.Rd | 1 rTPC-1.1.0/rTPC/man/get_ctmin.Rd | 1 rTPC-1.1.0/rTPC/man/get_e.Rd | 1 rTPC-1.1.0/rTPC/man/get_eh.Rd | 1 rTPC-1.1.0/rTPC/man/get_lower_lims.Rd | 3 rTPC-1.1.0/rTPC/man/get_model_names.Rd | 18 rTPC-1.1.0/rTPC/man/get_q10.Rd | 1 rTPC-1.1.0/rTPC/man/get_rmax.Rd | 1 rTPC-1.1.0/rTPC/man/get_skewness.Rd | 1 rTPC-1.1.0/rTPC/man/get_start_vals.Rd | 3 rTPC-1.1.0/rTPC/man/get_thermalsafetymargin.Rd | 1 rTPC-1.1.0/rTPC/man/get_thermaltolerance.Rd | 1 rTPC-1.1.0/rTPC/man/get_topt.Rd | 1 rTPC-1.1.0/rTPC/man/get_tpc_as_formula.Rd |only rTPC-1.1.0/rTPC/man/get_upper_lims.Rd | 3 rTPC-1.1.0/rTPC/man/hinshelwood_1947.Rd | 1 rTPC-1.1.0/rTPC/man/janisch1_1925.Rd |only rTPC-1.1.0/rTPC/man/janisch2_1925.Rd |only rTPC-1.1.0/rTPC/man/joehnk_2008.Rd | 1 rTPC-1.1.0/rTPC/man/johnsonlewin_1946.Rd | 1 rTPC-1.1.0/rTPC/man/kamykowski_1985.Rd | 1 rTPC-1.1.0/rTPC/man/lactin2_1995.Rd | 1 rTPC-1.1.0/rTPC/man/lobry_1991.Rd |only rTPC-1.1.0/rTPC/man/mitchell_2009.Rd |only rTPC-1.1.0/rTPC/man/oneill_1972.Rd | 1 rTPC-1.1.0/rTPC/man/pawar_2018.Rd | 1 rTPC-1.1.0/rTPC/man/quadratic_2008.Rd | 1 rTPC-1.1.0/rTPC/man/quickfit_tpc.Rd |only rTPC-1.1.0/rTPC/man/quickfit_tpc_multi.Rd |only rTPC-1.1.0/rTPC/man/ratkowsky_1983.Rd | 1 rTPC-1.1.0/rTPC/man/rezende_2019.Rd | 1 rTPC-1.1.0/rTPC/man/rosso_1993.Rd |only rTPC-1.1.0/rTPC/man/sharpeschoolfull_1981.Rd | 1 rTPC-1.1.0/rTPC/man/sharpeschoolhigh_1981.Rd | 1 rTPC-1.1.0/rTPC/man/sharpeschoollow_1981.Rd | 1 rTPC-1.1.0/rTPC/man/spain_1982.Rd | 1 rTPC-1.1.0/rTPC/man/stinner_1974.Rd |only rTPC-1.1.0/rTPC/man/taylorsexton_1972.Rd |only rTPC-1.1.0/rTPC/man/thomas_2012.Rd | 9 rTPC-1.1.0/rTPC/man/thomas_2017.Rd | 1 rTPC-1.1.0/rTPC/man/tomlinsonphillips_2015.Rd |only rTPC-1.1.0/rTPC/man/warrendreyer_2006.Rd |only rTPC-1.1.0/rTPC/man/weibull_1995.Rd | 1 rTPC-1.1.0/rTPC/tests/testthat/test-analytiskontodimas_2004.R |only rTPC-1.1.0/rTPC/tests/testthat/test-ashrafi1_2018.R |only rTPC-1.1.0/rTPC/tests/testthat/test-ashrafi2_2018.R |only rTPC-1.1.0/rTPC/tests/testthat/test-ashrafi3_2018.R |only rTPC-1.1.0/rTPC/tests/testthat/test-ashrafi4_2018.R |only rTPC-1.1.0/rTPC/tests/testthat/test-ashrafi5_2018.R |only rTPC-1.1.0/rTPC/tests/testthat/test-atkin_2005.R |only rTPC-1.1.0/rTPC/tests/testthat/test-betatypesimplified_2008.R |only rTPC-1.1.0/rTPC/tests/testthat/test-boatman_2017.R | 2 rTPC-1.1.0/rTPC/tests/testthat/test-briere1.R |only rTPC-1.1.0/rTPC/tests/testthat/test-briere1simplified_1999.R |only rTPC-1.1.0/rTPC/tests/testthat/test-briere2simplified_1999.R |only rTPC-1.1.0/rTPC/tests/testthat/test-briereextended_2021.R |only 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rTPC-1.1.0/rTPC/vignettes/bootstrapping_models.Rmd | 369 +- rTPC-1.1.0/rTPC/vignettes/fit_many_curves.Rmd | 136 rTPC-1.1.0/rTPC/vignettes/fit_many_models.Rmd | 1620 ++++++++- rTPC-1.1.0/rTPC/vignettes/model_averaging_selection.Rmd | 336 +- rTPC-1.1.0/rTPC/vignettes/model_weighting.Rmd | 5 rTPC-1.1.0/rTPC/vignettes/quickfit_parallel.Rmd |only rTPC-1.1.0/rTPC/vignettes/rTPC.Rmd | 72 rTPC-1.1.0/rTPC/vignettes/weighted_bootstrapping.Rmd | 15 221 files changed, 10541 insertions(+), 3721 deletions(-)
Title: Pattern Causality Analysis
Description: Infer causation from observational data through pattern causality analysis (PC), with original algorithm for time series data from Stavroglou et al. (2020) <doi:10.1073/pnas.1918269117>, as well as methodological extensions for spatial cross-sectional data introduced by Zhang & Wang (2025) <doi:10.1080/13658816.2025.2581207>, together with a systematic description proposed in Lyu et al. (2026) <doi:10.1016/j.compenvurbsys.2026.102435>.
Author: Wenbo Lyu [aut, cre, cph]
Maintainer: Wenbo Lyu <lyu.geosocial@gmail.com>
Diff between pc versions 0.1 dated 2026-03-30 and 0.2 dated 2026-04-10
DESCRIPTION | 10 MD5 | 54 +-- NAMESPACE | 4 NEWS.md | 26 + R/Agenerics.R | 2 R/RcppExports.R | 8 R/fnn.R |only R/formatoutput.R | 86 ++++- R/globals.R |only R/internal_utility.R | 43 ++ R/ops.R | 138 ++++---- R/pc-package.R | 8 R/pc.R | 69 ++-- R/zzz.R | 2 README.md | 46 +- inst/CITATION | 2 inst/case |only inst/include/pc.h | 2 inst/include/pc/distance.hpp | 18 - inst/include/pc/fnn.hpp |only inst/include/pc/neighbor.hpp |only inst/include/pc/patcaus.hpp | 116 +++++-- inst/include/pc/projection.hpp | 2 inst/include/pc/symdync.hpp | 136 ++++---- man/figures/pc.png |binary man/fnn.Rd |only man/ops.Rd | 29 + man/pc.Rd | 57 ++- src/FNN.cpp |only src/PC.cpp | 667 ++++++++++++++++++++++++++++++++--------- src/RcppExports.cpp | 32 + 31 files changed, 1110 insertions(+), 447 deletions(-)
Title: Discounted Cash Flow Tools for Commercial Real Estate
Description: Provides 'R' utilities to build unlevered and levered discounted cash
flow (DCF) tables for commercial real estate (CRE) assets. Functions generate
bullet and amortising debt schedules, compute credit metrics such as debt
service coverage ratios (DSCR), debt yield ratios, and forward loan-to-value
ratios (LTV), and expose an explicit property-level operating chain from gross
effective income (GEI) to net operating income (NOI) and property before-tax
cash flow (PBTCF). The toolkit supports end-to-end scenario execution from a
YAML (YAML Ain't Markup Language) configuration file parsed with 'yaml',
includes helpers for effective rent, constrained loan underwriting, and
simplified SPV-level tax simulations, and ships reproducible vignettes for
methodological and applied use cases.
Author: Kevin Poisson [aut, cre]
Maintainer: Kevin Poisson <kevin.poisson@parisgeo.cnrs.fr>
Diff between cre.dcf versions 0.0.3 dated 2026-01-12 and 0.0.5 dated 2026-04-10
DESCRIPTION | 27 MD5 | 183 ++++-- NAMESPACE | 29 + NEWS.md |only R/config.R | 468 +---------------- R/dcf.R | 407 +++++++++++--- R/debt.R | 141 +++++ R/engine_v3.R |only R/globals.R | 2 R/ratios.r | 218 +++++-- R/scenario_refi.R | 6 R/simple_api.R |only R/tax.R |only R/utils.R | 142 +++-- build/vignette.rds |binary inst/doc/analyst-cheat-sheet.R |only inst/doc/analyst-cheat-sheet.Rmd |only inst/doc/analyst-cheat-sheet.html |only inst/doc/before-tax-by-design.R |only inst/doc/before-tax-by-design.Rmd |only inst/doc/before-tax-by-design.html |only inst/doc/cre-glossary.html | 4 inst/doc/credit-structures-bullet-vs-amort.R | 72 -- inst/doc/credit-structures-bullet-vs-amort.Rmd | 95 +-- inst/doc/credit-structures-bullet-vs-amort.html | 251 +++------ inst/doc/french-investment-tax-impact.R |only inst/doc/french-investment-tax-impact.Rmd |only inst/doc/french-investment-tax-impact.html |only inst/doc/from-lease-roll-to-dcf.R |only inst/doc/from-lease-roll-to-dcf.Rmd |only inst/doc/from-lease-roll-to-dcf.html |only inst/doc/getting-started.R | 57 -- inst/doc/getting-started.Rmd | 94 +-- inst/doc/getting-started.html | 302 ++++------ inst/doc/investment-styles-panorama.R | 32 - inst/doc/investment-styles-panorama.Rmd | 139 ++--- inst/doc/investment-styles-panorama.html | 659 ++++++++++++------------ inst/doc/leases-effective-rent.R | 29 - inst/doc/leases-effective-rent.Rmd | 72 +- inst/doc/leases-effective-rent.html | 227 ++++---- inst/doc/methodological-foundations.R |only inst/doc/methodological-foundations.Rmd |only inst/doc/methodological-foundations.html |only inst/doc/reproducibility.R | 4 inst/doc/reproducibility.Rmd | 34 - inst/doc/reproducibility.html | 62 -- inst/doc/sensitivity-sweeps.R | 19 inst/doc/sensitivity-sweeps.Rmd | 61 -- inst/doc/sensitivity-sweeps.html | 150 ++--- inst/doc/start-in-5-lines.R |only inst/doc/start-in-5-lines.Rmd |only inst/doc/start-in-5-lines.html |only inst/doc/studycase_buyside.R | 3 inst/doc/studycase_buyside.Rmd | 26 inst/doc/studycase_buyside.html | 195 +++---- inst/doc/yaml-validation.Rmd | 13 inst/doc/yaml-validation.html | 34 - inst/extdata/preset_core.yml | 5 inst/extdata/preset_core_plus.yml | 11 inst/extdata/preset_opportunistic.yml | 21 inst/extdata/preset_value_added.yml | 16 man/analyze_deal.Rd |only man/asset_snapshot.Rd |only man/cf_make_full_table.Rd | 3 man/cfg_missing.Rd | 2 man/cfg_normalize.Rd | 2 man/compare_financing_scenarios.Rd | 8 man/dcf_add_noi_columns.Rd | 7 man/dcf_calculate.Rd | 25 man/deal_cashflows.Rd |only man/deal_spec.Rd |only man/deal_to_config.Rd |only man/debt_terms.Rd |only man/depreciation_spec.Rd |only man/interest_rule.Rd |only man/lease_effective_rent.Rd |only man/lease_event.Rd |only man/lease_roll.Rd |only man/lease_roll_snapshot.Rd |only man/lease_unit.Rd |only man/load_style_preset.Rd | 6 man/loss_rule.Rd |only man/project_terminal_noi.Rd |only man/renewal_event.Rd |only man/run_case.Rd | 7 man/styles_break_even_exit_yield.Rd | 6 man/styles_distressed_exit.Rd | 24 man/styles_growth_sensitivity.Rd | 8 man/styles_manifest.Rd | 21 man/summarize_case.Rd | 2 man/tax_basis_spv.Rd |only man/tax_run_spv.Rd |only man/tax_spec_spv.Rd |only man/test_refi.Rd | 4 man/underwrite_loan.Rd |only man/vacancy_event.Rd |only tests/testthat/test-cf-merge.R | 20 tests/testthat/test-engine-v3.R |only tests/testthat/test-methodological-helpers.R |only tests/testthat/test-ratios.R | 37 + tests/testthat/test-run-case-consistency.R |only tests/testthat/test-simple-api.R |only tests/testthat/test_dcf_calculate.R | 105 +++ tests/testthat/test_styles_preset.R | 167 +++++- tools/test_vanilla.R |only vignettes/analyst-cheat-sheet.Rmd |only vignettes/before-tax-by-design.Rmd |only vignettes/credit-structures-bullet-vs-amort.Rmd | 95 +-- vignettes/french-investment-tax-impact.Rmd |only vignettes/from-lease-roll-to-dcf.Rmd |only vignettes/getting-started.Rmd | 94 +-- vignettes/investment-styles-panorama.Rmd | 139 ++--- vignettes/leases-effective-rent.Rmd | 72 +- vignettes/manual-foundations.bib |only vignettes/methodological-foundations.Rmd |only vignettes/reproducibility.Rmd | 34 - vignettes/sensitivity-sweeps.Rmd | 61 -- vignettes/start-in-5-lines.Rmd |only vignettes/studycase_buyside.Rmd | 26 vignettes/yaml-validation.Rmd | 13 120 files changed, 2811 insertions(+), 2487 deletions(-)
Title: Maxwell Control Charts
Description: Computes Control limits, coefficients of control limits, various performance metrics and depicts control charts for monitoring Maxwell-distributed quality characteristics.
Author: Zahid Khan [aut],
Zsolt T. Kosztyan [aut, cre]
Maintainer: Zsolt T. Kosztyan <kosztyan.zsolt@gtk.uni-pannon.hu>
Diff between mxcc versions 0.0.4 dated 2025-08-19 and 0.0.5 dated 2026-04-10
DESCRIPTION | 8 ++++---- MD5 | 18 ++++++++++-------- NAMESPACE | 8 +++++--- R/mxewma.R |only R/plot.R | 8 ++------ R/print.R | 30 ++++++++++++++++-------------- R/summary.R | 6 +----- man/mxewma.Rd |only man/plot.Rd | 28 ++++++++++++++++------------ man/print.Rd | 14 ++++++-------- man/summary.Rd | 26 +++++++++++++++----------- 11 files changed, 75 insertions(+), 71 deletions(-)
Title: Multi-Omic Differentially Expressed Gene-Gene Pairs
Description: Performs multi-omic differential network
analysis by revealing differential interactions between molecular entities
(genes, proteins, transcription factors, or other biomolecules) across the
omic datasets provided.
For each omic dataset, a differential network is constructed where
links represent statistically significant differential interactions between
entities. These networks are then integrated into a comprehensive visualization
using distinct colors to distinguish interactions from different omic layers.
This unified display allows interactive exploration of cross-omic
patterns, such as differential interactions present at both transcript and
protein levels. For each link, users can access differential statistical
significance metrics (p values or adjusted p values, calculated via robust or
traditional linear regression with interaction term) and differential regression
plots.
The methods implemented in this package are described in Sciacca et al. (2023)
<doi:10.1093/bioinform [...truncated...]
Author: Elisabetta Sciacca [aut, cre, cph] ,
Myles Lewis [ctb]
Maintainer: Elisabetta Sciacca <e.sciacca@qmul.ac.uk>
Diff between multiDEGGs versions 1.2.0 dated 2026-03-24 and 1.2.1 dated 2026-04-10
DESCRIPTION | 6 MD5 | 25 ++-- NEWS.md | 5 R/feature_selection_for_ML.R | 29 ++-- README.md | 23 +++ inst/doc/Feature_Selection.R | 192 ++++++++++++++++++------------- inst/doc/Feature_Selection.Rmd | 50 +++++++- inst/doc/Feature_Selection.html | 76 +++++------- man/multiDEGGs_combined_filter.Rd | 15 +- man/multiDEGGs_filter.Rd | 14 +- tests/testthat/test-core_functions.R | 2 tests/testthat/test-plotting_functions.R | 6 vignettes/Feature_Selection.Rmd | 50 +++++++- vignettes/roc.png |only 14 files changed, 308 insertions(+), 185 deletions(-)
Title: R Markdown format for 'Moodle' XML cloze quizzes
Description: Enables the creation of 'Moodle' quiz questions using literate
programming with R Markdown. This makes it easy to quickly create a quiz that
can be randomly replicated with new datasets, questions, and options for
answers.
Author: Mitchell O'Hara-Wild [aut, cre] ,
Emi Tanaka [aut]
Maintainer: Mitchell O'Hara-Wild <mail@mitchelloharawild.com>
Diff between moodlequiz versions 0.2.0 dated 2025-12-06 and 0.2.1 dated 2026-04-10
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- NEWS.md | 6 +++++- README.md | 18 +++++++++++++++++- 4 files changed, 29 insertions(+), 9 deletions(-)
Title: Laboratorio di Ricerca Sociale con R
Description: Libreria di dati, scripts e funzioni che accompagna il libro "Ricerca sociale con R. Concetti e funzioni base per la ricerca sociale".
Author: Agnese Vardanega [aut, cre]
Maintainer: Agnese Vardanega <avardanega@unite.it>
Diff between LabRS versions 0.2.0 dated 2026-02-07 and 0.2.1 dated 2026-04-10
DESCRIPTION | 7 ++++--- MD5 | 4 ++-- README.md | 6 ++++++ 3 files changed, 12 insertions(+), 5 deletions(-)
Title: Package of the German Book "Statistik mit R und RStudio" by
Joerg grosse Schlarmann
Description: All datasets and functions used in the german book "Statistik mit R und RStudio" by grosse Schlarmann (2010-2024) <https://www.produnis.de/R/>.
Author: Joerg grosse Schlarmann [aut, cre]
Maintainer: Joerg grosse Schlarmann <schlarmann@produnis.de>
Diff between jgsbook versions 1.0.7 dated 2024-06-24 and 1.0.8 dated 2026-04-10
DESCRIPTION | 17 +++++++++-------- MD5 | 8 ++++---- NEWS.md | 4 ++++ R/functions.R | 42 ++++++++++++++++++++++++------------------ man/compare.lm.Rd | 2 +- 5 files changed, 42 insertions(+), 31 deletions(-)
Title: Build and Compare Statistical Models
Description: Build and compare nested statistical models with sets of equal and different independent variables. An analysis using this package is Marquardt et al. (2021) <https://github.com/p-mq/Percentile_based_averaging>.
Author: Dr J. Peter Amin Marquardt [aut, cre]
Maintainer: Dr J. Peter Amin Marquardt <peter@kmarquardt.de>
This is a re-admission after prior archival of version 0.1.2 dated 2021-08-02
Diff between BlanketStatsments versions 0.1.2 dated 2021-08-02 and 0.1.3 dated 2026-04-10
DESCRIPTION | 20 +++++----- MD5 | 14 +++---- NAMESPACE | 1 R/Blanket_statsments.R | 23 ++++++------ man/dot-build_model_formula.Rd | 58 +++++++++++++++---------------- man/redundancy_analysis.Rd | 2 - tests/testthat.R | 2 - tests/testthat/test-Blanket_statsments.R | 26 ++++++------- 8 files changed, 74 insertions(+), 72 deletions(-)
More information about BlanketStatsments at CRAN
Permanent link
Title: Causal Analysis of Observational Time-to-Event Data
Description: Implements target trial emulation methods to apply randomized
clinical trial design and analysis in an observational setting. Using
marginal structural models, it can estimate intention-to-treat and
per-protocol effects in emulated trials using electronic health
records. A description and application of the method can be found in
Danaei et al (2013) <doi:10.1177/0962280211403603>.
Author: Isaac Gravestock [aut, cre] ,
Li Su [aut],
Roonak Rezvani [aut] ,
Julia Moesch [aut],
Medical Research Council [fnd],
F. Hoffmann-La Roche AG [cph, fnd]
Maintainer: Isaac Gravestock <isaac.gravestock@roche.com>
Diff between TrialEmulation versions 0.0.4.9 dated 2026-01-14 and 0.0.4.11 dated 2026-04-10
DESCRIPTION | 6 - MD5 | 16 +-- NEWS.md | 2 R/initiators.R | 2 inst/doc/Getting-Started.html | 188 +++++++++++++++++++++--------------------- inst/doc/new-interface.html | 10 +- man/data_preparation.Rd | 2 man/initiators.Rd | 2 man/trial_msm.Rd | 2 9 files changed, 115 insertions(+), 115 deletions(-)
More information about TrialEmulation at CRAN
Permanent link
Title: Get Executing Script's Path
Description: Determine the path of the executing script. Compatible
with several popular GUIs: 'Rgui', 'RStudio', 'Positron',
'VSCode', 'Jupyter', 'Emacs', and 'Rscript' (shell). Compatible
with several functions and packages: 'source()',
'sys.source()', 'debugSource()' in 'RStudio',
'compiler::loadcmp()', 'utils::Sweave()', 'box::use()',
'knitr::knit()', 'plumber::plumb()', 'shiny::runApp()',
'package:targets', and 'testthat::source_file()'.
Author: Iris Simmons [aut, cre]
Maintainer: Iris Simmons <ikwsimmo@gmail.com>
Diff between this.path versions 2.7.1 dated 2025-11-07 and 2.8.0 dated 2026-04-10
this.path-2.7.1/this.path/src/promises.h |only this.path-2.8.0/this.path/DESCRIPTION | 8 this.path-2.8.0/this.path/LICENSE | 2 this.path-2.8.0/this.path/MD5 | 271 +-- this.path-2.8.0/this.path/NAMESPACE | 6 this.path-2.8.0/this.path/NEWS | 57 this.path-2.8.0/this.path/R/0.R | 6 this.path-2.8.0/this.path/R/backports.R | 4 this.path-2.8.0/this.path/R/cat.R | 6 this.path-2.8.0/this.path/R/checkpath.R | 4 this.path-2.8.0/this.path/R/defunct.R | 6 this.path-2.8.0/this.path/R/enhances.R | 6 this.path-2.8.0/this.path/R/error.R | 6 this.path-2.8.0/this.path/R/files.R | 6 this.path-2.8.0/this.path/R/ismain.R | 6 this.path-2.8.0/this.path/R/lineno.R | 6 this.path-2.8.0/this.path/R/make_fix_funs.R | 10 this.path-2.8.0/this.path/R/ns-hooks.R | 6 this.path-2.8.0/this.path/R/print.R | 6 this.path-2.8.0/this.path/R/progargs.R | 6 this.path-2.8.0/this.path/R/promises.R | 10 this.path-2.8.0/this.path/R/relpath.R | 6 this.path-2.8.0/this.path/R/rprojroot.R | 6 this.path-2.8.0/this.path/R/setsyspath.R | 24 this.path-2.8.0/this.path/R/shfile.R | 6 this.path-2.8.0/this.path/R/startup.R | 12 this.path-2.8.0/this.path/R/sys.R | 6 this.path-2.8.0/this.path/R/sysputenv.R | 6 this.path-2.8.0/this.path/R/tests.R | 6 this.path-2.8.0/this.path/R/thispath.R | 29 this.path-2.8.0/this.path/R/utils.R | 6 this.path-2.8.0/this.path/R/zzz.R | 7 this.path-2.8.0/this.path/README.md | 19 this.path-2.8.0/this.path/build/stage23.rdb |binary this.path-2.8.0/this.path/build/this.path.pdf |binary this.path-2.8.0/this.path/configure | 6 this.path-2.8.0/this.path/configure.win | 6 this.path-2.8.0/this.path/inst/NEWS.in.Rd | 49 this.path-2.8.0/this.path/inst/doc/NEWS.0 | 3 this.path-2.8.0/this.path/inst/extdata/README | 4 this.path-2.8.0/this.path/inst/extdata/main.R | 97 - 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this.path-2.8.0/this.path/src/rgui_path.c | 6 this.path-2.8.0/this.path/src/rprojroot.c | 6 this.path-2.8.0/this.path/src/rversiondefines.h | 6 this.path-2.8.0/this.path/src/setsyspath.c | 187 +- this.path-2.8.0/this.path/src/shfile.c | 6 this.path-2.8.0/this.path/src/startup.c | 71 this.path-2.8.0/this.path/src/symbols.h | 7 this.path-2.8.0/this.path/src/sys.c | 6 this.path-2.8.0/this.path/src/sys.h | 6 this.path-2.8.0/this.path/src/this.path.h | 6 this.path-2.8.0/this.path/src/thispath.c | 740 ++++------ this.path-2.8.0/this.path/src/thispathdefn.c | 688 ++++++++- this.path-2.8.0/this.path/src/thispathdefn.h | 234 ++- this.path-2.8.0/this.path/src/translations.h | 6 this.path-2.8.0/this.path/src/utils.c | 6 this.path-2.8.0/this.path/tests/basename2-tests.R | 6 this.path-2.8.0/this.path/tests/ext-tests.R | 14 this.path-2.8.0/this.path/tests/faster-subsequent-times.R | 6 this.path-2.8.0/this.path/tests/isclipboard-tests.R | 6 this.path-2.8.0/this.path/tests/package-box-supp/startsWith-NULL.R | 6 this.path-2.8.0/this.path/tests/package-box-supp/startsWith-env-path.R | 6 this.path-2.8.0/this.path/tests/package-box-supp/startsWith-src-path.R | 6 this.path-2.8.0/this.path/tests/package-box-supp/startsWith-sys-path.R | 6 this.path-2.8.0/this.path/tests/package-box-tests.R | 6 this.path-2.8.0/this.path/tests/pathjoin-tests.R | 6 this.path-2.8.0/this.path/tests/set-sys-path-tests.R | 6 this.path-2.8.0/this.path/tests/this-path-tests.R | 44 this.path-2.8.0/this.path/tests/zzz.R | 6 this.path-2.8.0/this.path/tools/configure.R | 45 this.path-2.8.0/this.path/tools/info.dcf | 2 this.path-2.8.0/this.path/tools/this_path_reg_ptrs.c | 8 137 files changed, 2538 insertions(+), 1180 deletions(-)
Title: Bayesian Mixtures with an Unknown Number of Components
Description: Fits Bayesian finite mixtures with an unknown number of components using the telescoping sampler and different component distributions. For more details see Frühwirth-Schnatter et al. (2021) <doi:10.1214/21-BA1294>, Malsiner-Walli et al. (in press) <doi:10.1007/s11634-025-00640-x> and Malsiner-Walli et al. (2026) <doi:10.48550/arXiv.2603.00277>.
Author: Gertraud Malsiner-Walli [aut, cre] ,
Bettina Gruen [aut] ,
Sylvia Fruehwirth-Schnatter [aut]
Maintainer: Gertraud Malsiner-Walli <Gertraud.Malsiner-Walli@wu.ac.at>
Diff between telescope versions 0.2-1 dated 2025-08-18 and 0.2-2 dated 2026-04-10
DESCRIPTION | 10 MD5 | 86 ++- R/SimData.R | 2 R/identifyLCAMixture.R | 7 R/identifyMixture.R | 7 R/plotBubble.R | 2 R/plotScatter.R | 2 R/priorOnK_spec.R | 2 R/prior_alpha_e0.R | 15 R/sampleK.R | 4 R/sampleLCA.R | 4 R/sampleLCAMixture.R | 4 R/sampleMultNormMixture.R | 4 R/samplePoisMixture.R | 4 R/sampleUniNormMixture.R | 12 R/sample_e0_alpha.R | 4 build/vignette.rds |binary inst/NEWS.Rd | 10 inst/doc/Bayesian_LCA.html | 388 ++++++++--------- inst/doc/Bayesian_LCA_mixtures.Rmd | 6 inst/doc/Bayesian_LCA_mixtures.html | 567 +++++++++++++------------- inst/doc/Bayesian_Poisson_mixtures.html | 364 ++++++++-------- inst/doc/Bayesian_mult_Gaussian_mixtures.html | 368 ++++++++-------- inst/doc/Bayesian_univ_Gaussian_mixtures.html | 366 ++++++++-------- inst/doc/CliPS_diabetes.R |only inst/doc/CliPS_diabetes.Rmd |only inst/doc/CliPS_diabetes.html |only man/SimData.Rd | 2 man/identifyLCAMixture.Rd | 4 man/identifyMixture.Rd | 4 man/plotBubble.Rd | 2 man/plotScatter.Rd | 2 man/priorOnAlpha_spec.Rd | 11 man/priorOnE0_spec.Rd | 2 man/priorOnK_spec.Rd | 2 man/sampleAlpha.Rd | 4 man/sampleK_alpha.Rd | 2 man/sampleK_e0.Rd | 2 man/sampleLCA.Rd | 4 man/sampleLCAMixture.Rd | 4 man/sampleMultNormMixture.Rd | 4 man/samplePoisMixture.Rd | 4 man/sampleUniNormMixture.Rd | 10 vignettes/Bayesian_LCA_mixtures.Rmd | 6 vignettes/CliPS_diabetes.Rmd |only vignettes/telescope.bib | 23 - 46 files changed, 1186 insertions(+), 1144 deletions(-)
Title: Transformed Additive Gaussian Processes
Description: Implement the transformed additive Gaussian (TAG) process and the transformed approximately additive Gaussian (TAAG) process proposed in Lin and Joseph (2020) <DOI:10.1080/00401706.2019.1665592>. These functions can be used to model deterministic computer experiments, obtain predictions at new inputs, and quantify the uncertainty of the predictions. This research is supported by a U.S. National Science Foundation grant DMS-1712642 and a U.S. Army Research Office grant W911NF-17-1-0007.
Author: Li-Hsiang Lin [aut, cre],
V. Roshan Joseph [aut]
Maintainer: Li-Hsiang Lin <lhlin@gsu.edu>
This is a re-admission after prior archival of version 0.5.1 dated 2021-06-07
Diff between TAG versions 0.5.1 dated 2021-06-07 and 0.7.1 dated 2026-04-10
DESCRIPTION | 14 +++++++++----- MD5 | 16 +++++++++------- R/TAG.R | 14 +++++++++++--- R/pred_TAAG.R | 13 +++++++++---- man/TAG.Rd | 2 +- src/Makevars | 1 - src/Makevars.win | 1 - src/RcppExports.cpp | 5 +++++ tests |only 9 files changed, 44 insertions(+), 22 deletions(-)
Title: Interface to the SCIP Optimization Suite
Description: Provides an R interface to SCIP (Solving Constraint Integer Programs), a framework for mixed-integer
programming (MIP), mixed-integer nonlinear programming (MINLP), and constraint integer programming
(2025, <doi:10.48550/arXiv.2511.18580>). Supports linear, quadratic, SOS, indicator, and knapsack
constraints with continuous, binary, and integer variables. Includes a one-shot solver interface
and a model-building API for incremental problem construction.
Author: Balasubramanian Narasimhan [aut, cre] ,
SCIP Optimization Suite Authors [cph]
Maintainer: Balasubramanian Narasimhan <naras@stanford.edu>
Diff between scip versions 1.10.0-2 dated 2026-04-03 and 1.10.0-3 dated 2026-04-10
DESCRIPTION | 8 MD5 | 138 +++++----- NEWS.md | 11 README.md | 14 - configure | 53 +++- configure.win | 44 +++ inst/CITATION | 2 inst/build_scip.sh | 14 - inst/scip/CMakeLists.txt | 6 inst/scip/Makefile | 27 +- inst/scip/cmake/Modules/FindASan.cmake | 2 inst/scip/cmake/Modules/FindMSan.cmake | 2 inst/scip/cmake/Modules/FindTSan.cmake | 2 inst/scip/cmake/Modules/FindUBSan.cmake | 9 inst/scip/cmake/Modules/sanitize-helpers.cmake | 50 ++- inst/scip/src/dejavu/dejavu.h | 14 - inst/scip/src/dejavu/ds.h | 5 inst/scip/src/dejavu/groups.h | 222 +++++++++++++++-- inst/scip/src/dejavu/ir.h | 14 + inst/scip/src/dejavu/preprocess.h | 52 ++-- inst/scip/src/dejavu/refinement.h | 18 + inst/scip/src/dejavu/utility.h | 2 inst/scip/src/scip/cons_nonlinear.c | 13 - inst/scip/src/scip/cons_superindicator.h | 28 +- inst/scip/src/scip/githash.c | 2 inst/scip/src/scip/heur_dks.c | 43 ++- inst/scip/src/scip/nlhdlr.c | 3 inst/scip/src/scip/nlpi_conopt.c | 5 inst/scip/src/scip/paramset.c | 15 - inst/scip/src/scip/presol_inttobinary.c | 4 inst/scip/src/scip/pub_iisfinder.h | 15 + inst/scip/src/scip/scip_iisfinder.h | 21 + inst/scip/src/scip/scip_solve.c | 63 +--- inst/scip/src/scip/scip_solvingstats.c | 28 ++ inst/scip/src/scip/scip_var.h | 4 inst/scip/src/scip/stat.c | 1 inst/scip/src/scip/struct_set.h | 3 inst/scip/src/scip/tree.c | 53 +--- inst/scip/src/scip/type_cons.h | 2 inst/scip/src/scip/var.c | 2 inst/scip/src/tinycthread/tinycthread.c | 30 +- inst/scip/src/tinycthread/tinycthread.h | 60 +--- inst/scip/src/tpi/tpi_openmp.c | 7 inst/scip/src/tpi/tpi_tnycthrd.c | 20 - inst/scip/src/tpi/tpi_tnycthrd.h | 8 inst/soplex/CMakeLists.txt | 2 inst/soplex/Makefile | 2 inst/soplex/cmake/Modules/FindASan.cmake | 2 inst/soplex/cmake/Modules/FindMSan.cmake | 2 inst/soplex/cmake/Modules/FindTSan.cmake | 2 inst/soplex/cmake/Modules/FindUBSan.cmake | 9 inst/soplex/cmake/Modules/sanitize-helpers.cmake | 50 ++- inst/soplex/src/soplex.hpp | 7 inst/soplex/src/soplex/basevectors.h | 86 ++---- inst/soplex/src/soplex/clufactor.hpp | 298 +++++++++++++---------- inst/soplex/src/soplex/clufactor_rational.hpp | 42 --- inst/soplex/src/soplex/fmt.hpp | 34 -- inst/soplex/src/soplex/git_hash.cpp | 2 inst/soplex/src/soplex/rational.h | 10 inst/soplex/src/soplex/slufactor.hpp | 18 - inst/soplex/src/soplex/solverational.hpp | 22 + inst/soplex/src/soplex/spxdefines.h | 20 + inst/soplex/src/soplex/spxsolve.hpp | 13 - inst/soplex/src/soplex/spxsolver.h | 22 - inst/soplex/src/soplex/spxsolver.hpp | 24 + inst/soplex/src/soplex/ssvectorbase.h | 58 ++-- inst/soplex/src/soplex/usertimer.cpp | 12 inst/soplex/src/soplex/wallclocktimer.cpp | 27 -- inst/soplex/src/soplexmain.cpp | 9 src/Makevars.in | 4 70 files changed, 1169 insertions(+), 747 deletions(-)
Title: Fast Generation of von Mises-Fisher Distributed Pseudo-Random
Vectors
Description: Generates pseudo-random vectors that follow an arbitrary von Mises-Fisher distribution on a sphere. This method is fast and efficient when generating a large number of pseudo-random vectors. Functions to generate random variates and compute density for the distribution of an inner product between von Mises-Fisher random vector and its mean direction are also provided. Details are in Kang and Oh (2024) <doi:10.1007/s11222-024-10419-3>.
Author: Seungwoo Kang [aut, cre] ,
Hee-Seok Oh [aut]
Maintainer: Seungwoo Kang <kangsw@skku.edu>
Diff between rvMF versions 0.1.1 dated 2026-02-15 and 0.1.2 dated 2026-04-10
DESCRIPTION | 10 +++++----- MD5 | 6 +++--- NEWS.md | 4 ++++ man/rvMF-package.Rd | 2 +- 4 files changed, 13 insertions(+), 9 deletions(-)
Title: Fast Iterative Filtering (FIF) with Portable FFT Backend
Description: Provides an R interface to a C implementation of Fast Iterative Filtering (FIF)
for decomposing a univariate signal into intrinsic mode functions (IMFs) and a residual.
The package uses Fast Fourier Transform library FFTW, if found. If not, it provides
instructions to install it for your OS. This is recommended, as R's internal fft(), while
avoiding external FFT dependencies, is two orders of magnitude slower. See vignette
'Installing FFTW for RFIF' for RFIF installation instructions.
Author: Chuck Coleman [aut, cre]
Maintainer: Chuck Coleman <cdcoleman113@gmail.com>
Diff between RFIF versions 1.0 dated 2026-03-31 and 1.0.1 dated 2026-04-10
DESCRIPTION | 9 MD5 | 20 NEWS.md | 6 build/vignette.rds |binary configure | 89 inst/doc/install-fftw3l.R |only inst/doc/install-fftw3l.Rmd |only inst/doc/install-fftw3l.html |only src/FFT.c | 525 src/FFT.h | 22 src/Fif.c | 5045 -------- src/Fif.h |24831 ++++++++++++++++++++++++++++++++++++++++++- vignettes/install-fftw3l.Rmd |only 13 files changed, 25685 insertions(+), 4862 deletions(-)
Title: Valid Inference on Multiple Quantile Regressions
Description: The approach is based on the closed testing procedure to control familywise error rate in a strong sense.
The local tests implemented are Wald-type and rank-score.
The method is described in De Santis, et al., (2026), <doi:10.48550/arXiv.2511.07999>.
Author: Angela Andreella [aut, cre],
Anna Vesely [aut],
Riccardo De Santis [aut]
Maintainer: Angela Andreella <angela.andreella@unive.it>
Diff between quasar versions 0.2.0 dated 2026-01-09 and 0.2.1 dated 2026-04-10
quasar-0.2.0/quasar/TODO |only quasar-0.2.1/quasar/DESCRIPTION | 10 +++++----- quasar-0.2.1/quasar/MD5 | 13 ++++++------- quasar-0.2.1/quasar/R/estimateCovariance.R | 2 +- quasar-0.2.1/quasar/R/rankTest.R | 4 ++-- quasar-0.2.1/quasar/R/utils.R | 2 +- quasar-0.2.1/quasar/README.md | 8 +++++--- quasar-0.2.1/quasar/man/rankTest.Rd | 2 +- 8 files changed, 21 insertions(+), 20 deletions(-)
Title: Visualizing Panel Data
Description: Visualizes panel data. It has four main functionalities: (1) it plots the treatment status and missing values in a panel dataset; (2) it visualizes the temporal dynamics of a main variable of interest; (3) it depicts the bivariate relationships between a treatment variable and an outcome variable either by unit or in aggregate; (4) it displays the network structure of multi-way fixed effects as a k-partite graph, identifying connected components, singletons, and duplicate observations. For details, see <doi:10.18637/jss.v107.i07>.
Author: Yiqing Xu [aut, cre] ,
Hongyu Mou [aut],
Licheng Liu [aut]
Maintainer: Yiqing Xu <yiqingxu@stanford.edu>
Diff between panelView versions 1.2.1 dated 2026-03-21 and 1.3.0 dated 2026-04-10
DESCRIPTION | 12 +-- MD5 | 10 +-- NAMESPACE | 5 + R/panelView.R | 141 +++++++++++++++++++++++++++++++++++--------- R/plot-network.R |only man/panelView.Rd | 18 ++++- tests/testthat/test-graph.R |only 7 files changed, 146 insertions(+), 40 deletions(-)
Title: Estimation, Diagnostics and Visualization of Conditional
Marginal Effects
Description: Performs estimation, diagnostics, and visualization of conditional marginal effects and group average treatment effects of a treatment on an outcome across different values of a moderator. Optionally integrates with the 'mlr3extralearners' package for additional machine learning backends compatible with the double machine learning estimators. 'mlr3extralearners' is not on CRAN but can be obtained from <https://github.com/mlr-org/mlr3extralearners>.
Author: Yiqing Xu [aut, cre],
Jens Hainmueller [aut],
Jonathan Mummolo [aut],
Tianzhu Qin [aut],
Jiehan Liu [aut],
Ziyi Liu [aut]
Maintainer: Yiqing Xu <yiqingxu@stanford.edu>
Diff between interflex versions 1.2.8 dated 2025-12-17 and 1.4.0 dated 2026-04-10
interflex-1.2.8/interflex/R/RcppExports.R |only interflex-1.2.8/interflex/R/ttest.R |only interflex-1.2.8/interflex/man/rcpparma_hello_world.Rd |only interflex-1.2.8/interflex/src |only interflex-1.4.0/interflex/DESCRIPTION | 52 interflex-1.4.0/interflex/MD5 | 97 interflex-1.4.0/interflex/NAMESPACE | 20 interflex-1.4.0/interflex/NEWS.md |only interflex-1.4.0/interflex/R/DML.R |only interflex-1.4.0/interflex/R/binning.R | 532 - interflex-1.4.0/interflex/R/estimate_cme_irm.R |only interflex-1.4.0/interflex/R/estimate_cme_plr.R |only interflex-1.4.0/interflex/R/estimate_gte_irm.R |only interflex-1.4.0/interflex/R/estimate_gte_plr.R |only interflex-1.4.0/interflex/R/gam.R | 46 interflex-1.4.0/interflex/R/gate_utils.R |only interflex-1.4.0/interflex/R/grf.R |only interflex-1.4.0/interflex/R/inter_test.R | 434 - interflex-1.4.0/interflex/R/interflex.R | 2679 +++++---- interflex-1.4.0/interflex/R/kernel.R | 4902 ++++++++++-------- interflex-1.4.0/interflex/R/lasso.R |only interflex-1.4.0/interflex/R/lasso_discrete.R |only interflex-1.4.0/interflex/R/linear.R | 4509 ++++++++-------- interflex-1.4.0/interflex/R/plot.R | 2965 ++++++---- interflex-1.4.0/interflex/R/plot_pool.R | 2525 +++++---- interflex-1.4.0/interflex/R/predict.R | 1574 ++--- interflex-1.4.0/interflex/R/print.R |only interflex-1.4.0/interflex/R/raw.R | 348 - interflex-1.4.0/interflex/R/uniform.R |only interflex-1.4.0/interflex/R/utils.R |only interflex-1.4.0/interflex/R/zzz.r | 20 interflex-1.4.0/interflex/data/interflex.RData |binary interflex-1.4.0/interflex/man/app-data.Rd |only interflex-1.4.0/interflex/man/inter_test.Rd | 2 interflex-1.4.0/interflex/man/interflex-internal.Rd | 4 interflex-1.4.0/interflex/man/interflex-package.Rd | 3 interflex-1.4.0/interflex/man/interflex.Rd | 220 interflex-1.4.0/interflex/man/plot.interflex.Rd | 28 interflex-1.4.0/interflex/man/predict.interflex.Rd | 2 interflex-1.4.0/interflex/man/s1.Rd | 1 interflex-1.4.0/interflex/man/s2.Rd | 1 interflex-1.4.0/interflex/man/s3.Rd | 1 interflex-1.4.0/interflex/man/s4.Rd | 1 interflex-1.4.0/interflex/man/s5.Rd | 1 interflex-1.4.0/interflex/man/s6.Rd | 1 interflex-1.4.0/interflex/man/s7.Rd | 1 interflex-1.4.0/interflex/man/s8.Rd | 1 interflex-1.4.0/interflex/man/s9.Rd | 1 interflex-1.4.0/interflex/tests |only 49 files changed, 11641 insertions(+), 9330 deletions(-)
Title: Geographical Ecology and Conservation Knowledge Online
Description: Includes a collection of geographical analysis functions aimed primarily at ecology and conservation science studies, allowing processing of both point and raster data. Now integrates SPECTRE (<https://biodiversityresearch.org/spectre/>), a dataset of global geospatial threat data, developed by the authors.
Author: Vasco V. Branco [cre, aut] ,
Pedro Cardoso [aut] ,
Luis Correia [ctb]
Maintainer: Vasco V. Branco <vasco.branco@helsinki.fi>
Diff between gecko versions 1.0.2 dated 2025-09-02 and 1.0.3 dated 2026-04-10
DESCRIPTION | 8 +++--- MD5 | 28 +++++++++++----------- R/access_fn.R | 37 +++++++++++++++++++++-------- R/aux_fn.R | 11 +++++++- R/outlier_fn.R | 36 ++++++++++++++++------------- R/spatial_fn.R | 37 ++++++++++++++++------------- R/spectrify.R | 4 +-- inst/extdata/spectre.metadata.csv | 47 +++++++++++++++++--------------------- man/create.lat.Rd | 4 +-- man/create.long.Rd | 4 +-- man/outliers.detect.Rd | 8 ++++-- man/outliers.detect.mass.Rd | 5 +++- man/reduce.Rd | 4 +++ man/spectre.area.Rd | 7 ++++- man/spectre.citations.Rd | 3 -- 15 files changed, 141 insertions(+), 102 deletions(-)
Title: Generate Color Mapping Functions
Description: A color mapping is generated according to the break values and corresponding colors.
Other colors are generated by interpolating in a certain color space. The functions were part
of the 'circlize' package <https://CRAN.R-project.org/package=circlize>.
Author: Zuguang Gu [aut, cre]
Maintainer: Zuguang Gu <guzuguang@suat-sz.edu.cn>
Diff between colorRamp2 versions 0.1.0 dated 2022-12-21 and 0.1.1 dated 2026-04-10
DESCRIPTION | 14 +++++++------- MD5 | 8 ++++---- build/vignette.rds |binary inst/doc/colorRamp2.R | 2 +- inst/doc/colorRamp2.html | 42 ++++++++++++++++++++++-------------------- 5 files changed, 34 insertions(+), 32 deletions(-)
Title: Israel Baby Names 1949-2024
Description: Israeli baby names provided by Israel's Central Bureau of Statistics
(CBS/LAMAS). Contains names used for at least 5 children in a given year,
covering sectors "Jewish", "Muslim", "Christian-Arab", and "Druze" from
1949-2024. Legacy 1948 data and archived "Other" sector data are provided
as separate datasets. Primary data source: CBS Release 391/2025
<https://www.cbs.gov.il/he/mediarelease/DocLib/2025/391/11_25_391t1.xlsx>.
Author: Aviezer Lifshitz [aut, cre]
Maintainer: Aviezer Lifshitz <aviezer.lifshitz@weizmann.ac.il>
Diff between babynamesIL versions 0.2.1 dated 2026-03-05 and 0.2.3 dated 2026-04-10
DESCRIPTION | 6 ++--- MD5 | 16 +++++++-------- NEWS.md | 32 ++++++++++++++++++++++++++++++ R/data.R | 6 ++++- README.md | 2 - data/babynamesIL_totals.rda |binary man/babynamesIL_totals.Rd | 6 ++++- tests/testthat/_snaps/data.md | 44 +++++++++++++++++++++--------------------- tests/testthat/test-data.R | 24 +++++++++++++++------- 9 files changed, 92 insertions(+), 44 deletions(-)
Title: Time Series Analysis with State Space Model
Description: Functions for statistical analysis, modeling and simulation of time
series with state space model, based on the methodology in Kitagawa
(2020, ISBN: 978-0-367-18733-0).
Author: Yoshinori Kawasaki [aut, cre],
Junji Nakano [aut],
Masami Saga [aut],
The Institute of Statistical Mathematics [cph, fnd]
Maintainer: Yoshinori Kawasaki <kawasaki@ism.ac.jp>
Diff between TSSS versions 1.3.4-5 dated 2023-09-29 and 1.3.4-7 dated 2026-04-10
TSSS-1.3.4-5/TSSS/inst/AUTHORS |only TSSS-1.3.4-5/TSSS/inst/doc |only TSSS-1.3.4-5/TSSS/src/TSSS.h |only TSSS-1.3.4-7/TSSS/DESCRIPTION | 23 +++- TSSS-1.3.4-7/TSSS/MD5 | 94 +++++++++---------- TSSS-1.3.4-7/TSSS/NEWS.md | 9 + TSSS-1.3.4-7/TSSS/data/BLSALLFOOD.rda |binary TSSS-1.3.4-7/TSSS/data/HAKUSAN.rda |binary TSSS-1.3.4-7/TSSS/data/Haibara.rda |binary TSSS-1.3.4-7/TSSS/data/MYE1F.rda |binary TSSS-1.3.4-7/TSSS/data/NLmodel.rda |binary TSSS-1.3.4-7/TSSS/data/Nikkei225.rda |binary TSSS-1.3.4-7/TSSS/data/PfilterSample.rda |binary TSSS-1.3.4-7/TSSS/data/Rainfall.rda |binary TSSS-1.3.4-7/TSSS/data/Sunspot.rda |binary TSSS-1.3.4-7/TSSS/data/Temperature.rda |binary TSSS-1.3.4-7/TSSS/data/WHARD.rda |binary TSSS-1.3.4-7/TSSS/inst/COPYRIGHTS |only TSSS-1.3.4-7/TSSS/src/arfitf.f | 2 TSSS-1.3.4-7/TSSS/src/armaf.f | 2 TSSS-1.3.4-7/TSSS/src/armafit2f.f | 2 TSSS-1.3.4-7/TSSS/src/armaftf.f | 2 TSSS-1.3.4-7/TSSS/src/boxcoxf.f | 2 TSSS-1.3.4-7/TSSS/src/comsub.f | 1 TSSS-1.3.4-7/TSSS/src/crscorf.f | 2 TSSS-1.3.4-7/TSSS/src/denstyf.f | 5 - TSSS-1.3.4-7/TSSS/src/fftperf.f | 2 TSSS-1.3.4-7/TSSS/src/init.c | 22 ---- TSSS-1.3.4-7/TSSS/src/klinfof.f | 2 TSSS-1.3.4-7/TSSS/src/lsar1f.f | 2 TSSS-1.3.4-7/TSSS/src/lsar2f.f | 2 TSSS-1.3.4-7/TSSS/src/lsqrf.f | 2 TSSS-1.3.4-7/TSSS/src/marfitf.f | 2 TSSS-1.3.4-7/TSSS/src/marlsqf.f | 2 TSSS-1.3.4-7/TSSS/src/marspcf.f | 2 TSSS-1.3.4-7/TSSS/src/ngsimf.f | 2 TSSS-1.3.4-7/TSSS/src/ngsmthf.f | 2 TSSS-1.3.4-7/TSSS/src/particle_smoother_nonlinearf.f | 15 +-- TSSS-1.3.4-7/TSSS/src/particle_smootherf.f | 8 + TSSS-1.3.4-7/TSSS/src/periodf.f | 2 TSSS-1.3.4-7/TSSS/src/polregf.f | 2 TSSS-1.3.4-7/TSSS/src/regF77.h | 22 ---- TSSS-1.3.4-7/TSSS/src/seasonf.f | 2 TSSS-1.3.4-7/TSSS/src/simssmf.f | 2 TSSS-1.3.4-7/TSSS/src/smoothf.f | 2 TSSS-1.3.4-7/TSSS/src/trendf.f | 2 TSSS-1.3.4-7/TSSS/src/tvarf.f | 2 TSSS-1.3.4-7/TSSS/src/tvspcf.f | 2 TSSS-1.3.4-7/TSSS/src/tvvarf.f | 2 TSSS-1.3.4-7/TSSS/src/unicorf.f | 2 50 files changed, 86 insertions(+), 165 deletions(-)
Title: Time-Dependent ROC Curve and AUC for Censored Survival Data
Description: Estimation of time-dependent ROC curve and area under time dependent ROC curve (AUC) in the presence of censored data, with or without competing risks. Confidence intervals of AUCs and tests for comparing AUCs of two rival markers measured on the same subjects can be computed, using the iid-representation of the AUC estimator. Plot functions for time-dependent ROC curves and AUC curves are provided. Time-dependent Positive Predictive Values (PPV) and Negative Predictive Values (NPV) can also be computed. See Blanche et al. (2013) <doi:10.1002/sim.5958> and references therein for the details of the methods implemented in the package.
Author: Paul Blanche [aut, cre]
Maintainer: Paul Blanche <paulfblanche@gmail.com>
Diff between timeROC versions 0.4 dated 2019-12-18 and 0.4.1 dated 2026-04-10
DESCRIPTION | 16 ++++++++++------ MD5 | 10 +++++----- data/Melano.RData |binary data/Paquid.RData |binary inst/CITATION | 13 +++---------- man/compare.Rd | 2 +- 6 files changed, 19 insertions(+), 22 deletions(-)
Title: Selective Editing via Mixture Models
Description: Detection of outliers and influential errors using a latent variable model.
Author: Ugo Guarnera [aut],
Teresa Buglielli [aut],
Davide Di Cecco [aut, cre]
Maintainer: Davide Di Cecco <dicecco@istat.it>
Diff between SeleMix versions 1.0.3 dated 2025-01-23 and 1.0.4 dated 2026-04-10
SeleMix-1.0.3/SeleMix/inst |only SeleMix-1.0.4/SeleMix/DESCRIPTION | 19 + SeleMix-1.0.4/SeleMix/MD5 | 31 +-- SeleMix-1.0.4/SeleMix/NAMESPACE | 14 - SeleMix-1.0.4/SeleMix/NEWS | 3 SeleMix-1.0.4/SeleMix/R/check.vars.r | 308 +++++++++++++++++++++----------- SeleMix-1.0.4/SeleMix/R/ml.est.R | 11 - SeleMix-1.0.4/SeleMix/R/post.prob.R | 131 +++++++++++-- SeleMix-1.0.4/SeleMix/R/pred.y.r | 294 ++++++++++++++++++------------ SeleMix-1.0.4/SeleMix/R/sel.edit.r | 223 +++++++++++++++-------- SeleMix-1.0.4/SeleMix/R/sel.pairs.r | 216 +++++++++++++++++----- SeleMix-1.0.4/SeleMix/R/sel.plot.R | 227 ++++++++++++++++------- SeleMix-1.0.4/SeleMix/R/tensorizza.R | 69 +++++-- SeleMix-1.0.4/SeleMix/build/partial.rdb |binary SeleMix-1.0.4/SeleMix/man/ml.est.Rd | 7 SeleMix-1.0.4/SeleMix/man/pred.y.Rd | 2 SeleMix-1.0.4/SeleMix/man/sel.edit.Rd | 2 17 files changed, 1060 insertions(+), 497 deletions(-)
Title: SAM: Significance Analysis of Microarrays
Description: Significance Analysis of Microarrays for differential expression analysis, RNAseq data and related problems.
Author: Rob Tibshirani [aut, cre],
Michael J. Seo [aut],
G. Chu [aut],
Balasubramanian Narasimhan [aut],
Jun Li [aut]
Maintainer: Rob Tibshirani <tibs@stanford.edu>
Diff between samr versions 3.0 dated 2018-10-16 and 3.0.1 dated 2026-04-10
DESCRIPTION | 32 +++++++++++++++++++++++++------- MD5 | 10 +++++----- inst/doc/sam.pdf |binary man/SAM.Rd | 2 +- man/samr.Rd | 10 +++++----- man/samr.assess.samplesize.plot.Rd | 2 +- 6 files changed, 37 insertions(+), 19 deletions(-)
Title: Reproducible Reports in Psychology
Description: Helper functions for producing reports in Psychology (Reproducible Research). Provides required formatted strings (APA style) for use in 'Knitr'/'Latex' integration within *.Rnw files.
Author: Ian G Mackenzie [cre, aut],
Carolin Dudschig [aut]
Maintainer: Ian G Mackenzie <ian.mackenzie@uni-tuebingen.de>
This is a re-admission after prior archival of version 3.0.2 dated 2022-09-09
Diff between psychReport versions 3.0.2 dated 2022-09-09 and 4.0.1 dated 2026-04-10
DESCRIPTION | 14 - LICENSE | 4 MD5 | 83 +++---- NAMESPACE | 3 NEWS.md |only R/anova.R | 301 ++++++++++---------------- R/psychReport.R | 1 R/psychReportData.R | 25 +- R/sphericity.R |only R/utils.R | 18 - man/aovDispMeans.Rd | 12 - man/aovDispTable.Rd | 10 man/aovEffectSize.Rd | 16 - man/aovJackknifeAdjustment.Rd | 13 - man/aovRoundDigits.Rd | 11 man/aovSphericityAdjustment.Rd | 20 - man/aovTable.Rd | 20 - man/aovTidyTable.Rd | 9 man/effectsizeValueString.Rd | 13 - man/fValueString.Rd | 7 man/mathString.Rd | 3 man/meanStrAov.Rd | 16 - man/normData.Rd | 3 man/printAovMeans.Rd | 8 man/printTable.Rd | 9 man/requiredPackages.Rd | 2 man/sphericityValueString.Rd | 11 man/statStrAov.Rd | 11 tests/testthat/test-aovDispMeans.R | 8 tests/testthat/test-aovDispTable.R | 14 - tests/testthat/test-aovEffectSize.R | 11 tests/testthat/test-aovJackknifeAdjustment.R | 11 tests/testthat/test-aovRoundDigits.R | 16 - tests/testthat/test-aovSphericityAdjustment.R | 90 ++++++- tests/testthat/test-aovTable.R | 29 +- tests/testthat/test-effectsizeValueString.R | 23 - tests/testthat/test-fValueString.R | 11 tests/testthat/test-meanStrAov.R | 19 - tests/testthat/test-printAovMeans.R | 14 - tests/testthat/test-printTable.R | 6 tests/testthat/test-psychReportData.R |only tests/testthat/test-requiredPackages.R | 5 tests/testthat/test-sphericityValueString.R | 32 +- tests/testthat/test-statStrAov.R | 30 -- 44 files changed, 395 insertions(+), 567 deletions(-)
Title: Analysis of Diffusion and Contagion Processes on Networks
Description: Empirical statistical analysis, visualization and simulation of
diffusion and contagion processes on networks. The package implements algorithms
for calculating network diffusion statistics such as transmission rate, hazard
rates, exposure models, network threshold levels, infectiousness (contagion),
and susceptibility. The package is inspired by work published in Valente,
et al., (2015) <DOI:10.1016/j.socscimed.2015.10.001>; Valente (1995) <ISBN:
9781881303213>, Myers (2000) <DOI:10.1086/303110>, Iyengar and others (2011)
<DOI:10.1287/mksc.1100.0566>, Burt (1987) <DOI:10.1086/228667>; among others.
Author: George Vega Yon [aut, cre] ,
Thomas Valente [aut, cph] ,
Anibal Olivera Morales [aut, ctb] ,
Stephanie Dyal [ctb] ,
Timothy Hayes [ctb]
Maintainer: George Vega Yon <g.vegayon@gmail.com>
This is a re-admission after prior archival of version 1.24.0 dated 2025-12-09
Diff between netdiffuseR versions 1.24.0 dated 2025-12-09 and 1.25.0 dated 2026-04-10
netdiffuseR-1.24.0/netdiffuseR/cleanup |only netdiffuseR-1.24.0/netdiffuseR/configure |only netdiffuseR-1.24.0/netdiffuseR/configure.ac |only netdiffuseR-1.24.0/netdiffuseR/src/Makevars.in |only netdiffuseR-1.25.0/netdiffuseR/DESCRIPTION | 32 ++-- netdiffuseR-1.25.0/netdiffuseR/MD5 | 66 ++++---- netdiffuseR-1.25.0/netdiffuseR/NAMESPACE | 1 netdiffuseR-1.25.0/netdiffuseR/NEWS.md | 22 ++ netdiffuseR-1.25.0/netdiffuseR/R/collapse_timeframes.R |only netdiffuseR-1.25.0/netdiffuseR/R/data.r | 79 ++++++++-- netdiffuseR-1.25.0/netdiffuseR/R/plot_diffnet2.r | 2 netdiffuseR-1.25.0/netdiffuseR/README.md | 40 ++--- netdiffuseR-1.25.0/netdiffuseR/build/partial.rdb |binary netdiffuseR-1.25.0/netdiffuseR/build/vignette.rds |binary netdiffuseR-1.25.0/netdiffuseR/data/epigames.rda |only netdiffuseR-1.25.0/netdiffuseR/data/epigamesDiffNet.rda |only netdiffuseR-1.25.0/netdiffuseR/inst/doc/analyzing-medical-innovation-data.html | 26 +-- netdiffuseR-1.25.0/netdiffuseR/inst/doc/introduction-to-netdiffuser.html | 18 +- netdiffuseR-1.25.0/netdiffuseR/man/brfarmers.Rd | 2 netdiffuseR-1.25.0/netdiffuseR/man/brfarmersDiffNet.Rd | 2 netdiffuseR-1.25.0/netdiffuseR/man/collapse_timeframes.Rd |only netdiffuseR-1.25.0/netdiffuseR/man/diffusion-data.Rd | 32 ++-- netdiffuseR-1.25.0/netdiffuseR/man/epigames.Rd |only netdiffuseR-1.25.0/netdiffuseR/man/epigamesDiffNet.Rd |only netdiffuseR-1.25.0/netdiffuseR/man/fakeDynEdgelist.Rd | 2 netdiffuseR-1.25.0/netdiffuseR/man/fakeEdgelist.Rd | 2 netdiffuseR-1.25.0/netdiffuseR/man/fakesurvey.Rd | 2 netdiffuseR-1.25.0/netdiffuseR/man/fakesurveyDyn.Rd | 2 netdiffuseR-1.25.0/netdiffuseR/man/figures/README-plot_diffnet-1.png |binary netdiffuseR-1.25.0/netdiffuseR/man/figures/README-plot_diffnet2-1.png |binary netdiffuseR-1.25.0/netdiffuseR/man/figures/README-plot_diffnet2-withmap-1.png |binary netdiffuseR-1.25.0/netdiffuseR/man/kfamily.Rd | 2 netdiffuseR-1.25.0/netdiffuseR/man/kfamilyDiffNet.Rd | 2 netdiffuseR-1.25.0/netdiffuseR/man/medInnovations.Rd | 2 netdiffuseR-1.25.0/netdiffuseR/man/medInnovationsDiffNet.Rd | 2 netdiffuseR-1.25.0/netdiffuseR/man/round_to_seq.Rd | 2 netdiffuseR-1.25.0/netdiffuseR/src/Makevars |only netdiffuseR-1.25.0/netdiffuseR/src/Makevars.win | 11 - netdiffuseR-1.25.0/netdiffuseR/src/plot.cpp | 17 +- netdiffuseR-1.25.0/netdiffuseR/tests/testthat/test-collapse_timeframes.R |only 40 files changed, 232 insertions(+), 136 deletions(-)
Title: Nested Cross-Validation with 'glmnet' and 'caret'
Description: Implements nested k*l-fold cross-validation for lasso and elastic-net regularised linear models via the 'glmnet' package and other machine learning models via the 'caret' package <doi:10.1093/bioadv/vbad048>. Cross-validation of 'glmnet' alpha mixing parameter and embedded fast filter functions for feature selection are provided. Described as double cross-validation by Stone (1977) <doi:10.1111/j.2517-6161.1977.tb01603.x>. Also implemented is a method using outer CV to measure unbiased model performance metrics when fitting Bayesian linear and logistic regression shrinkage models using the horseshoe prior over parameters to encourage a sparse model as described by Piironen & Vehtari (2017) <doi:10.1214/17-EJS1337SI>.
Author: Myles Lewis [aut, cre] ,
Athina Spiliopoulou [aut] ,
Cankut Cubuk [ctb] ,
Katriona Goldmann [ctb] ,
Ryan C. Thompson [ctb]
Maintainer: Myles Lewis <myles.lewis@qmul.ac.uk>
This is a re-admission after prior archival of version 0.8.0 dated 2025-03-10
Diff between nestedcv versions 0.8.0 dated 2025-03-10 and 0.8.2 dated 2026-04-10
DESCRIPTION | 18 +++++----- MD5 | 38 ++++++++++----------- NEWS.md | 12 ++++++ R/cv.hsstan.R | 2 + R/filters.R | 7 ++- R/nest_filter_balance.R | 11 ++++-- R/outercv.R | 4 +- R/precision_recall.R | 4 ++ R/repeatcv.R | 8 +++- R/shap.R | 3 + R/stat_filter.R | 3 + build/vignette.rds |binary inst/doc/nestedcv.html | 78 ++++++++++++++++++++++---------------------- inst/doc/nestedcv_shap.html | 22 +++++++++--- man/model.hsstan.Rd | 2 + man/outercv.Rd | 4 +- man/plot.prc.Rd | 2 + man/prc.Rd | 2 + man/pred_nestcv_glmnet.Rd | 3 + man/stat_filter.Rd | 3 + 20 files changed, 141 insertions(+), 85 deletions(-)
Title: Microbial Community Ecology Data Analysis
Description: A series of statistical and plotting approaches in microbial community ecology based on the R6 class. The classes are designed for data preprocessing, taxa abundance plotting, alpha diversity analysis, beta diversity analysis, differential abundance test, null model analysis, network analysis, machine learning, environmental data analysis and functional analysis.
Author: Chi Liu [aut, cre],
Felipe R. P. Mansoldo [ctb],
Minjie Yao [ctb],
Xiangzhen Li [ctb]
Maintainer: Chi Liu <liuchi0426@126.com>
Diff between microeco versions 2.0.0 dated 2026-01-27 and 2.1.0 dated 2026-04-10
DESCRIPTION | 8 +- MD5 | 50 ++++++++------- NAMESPACE | 1 R/data.R | 42 ++++++++++++- R/microtable.R | 4 - R/trans_abund.R | 26 ++++---- R/trans_alpha.R | 6 - R/trans_beta.R | 2 R/trans_classifier.R | 6 + R/trans_diff.R | 130 +++++++++++++++++++++++++--------------- R/trans_env.R | 124 +++++++++++++++++++++++--------------- R/trans_func.R | 3 R/trans_metab.R |only R/trans_network.R | 157 +++++++++++++++++++++++++++++-------------------- R/trans_nullmodel.R | 10 +-- R/trans_venn.R | 20 +++--- R/utility.R | 18 +++-- data/dataset.RData |binary data/soil_metab.RData |only data/soil_microb.RData |only man/microtable.Rd | 2 man/phylo_tree_16S.Rd | 2 man/soil_metab.Rd |only man/soil_microb.Rd |only man/tidy_taxonomy.Rd | 12 ++- man/trans_diff.Rd | 33 ++++++---- man/trans_env.Rd | 25 ++++--- man/trans_metab.Rd |only man/trans_network.Rd | 32 ++++++++- 29 files changed, 454 insertions(+), 259 deletions(-)
Title: Legends for Maps
Description: Create legends for maps and other graphics. Thematic maps need to
be accompanied by legible legends to be fully comprehensible. This package
offers a wide range of legends useful for cartography, some of which may
also be useful for other types of graphics.
Author: Timothee Giraud [cre, aut]
Maintainer: Timothee Giraud <timothee.giraud@cnrs.fr>
Diff between maplegend versions 0.6.0 dated 2026-04-07 and 0.6.1 dated 2026-04-10
DESCRIPTION | 6 +- MD5 | 8 +-- NEWS.md | 7 +++ R/lg_prop.R | 4 - inst/tinytest/tests.R | 106 ++++++++++++++++++++++++-------------------------- 5 files changed, 68 insertions(+), 63 deletions(-)
Title: Automatic Processing of Terrestrial-Based Technologies Point
Cloud Data for Forestry Purposes
Description: Process automation of point cloud data derived from terrestrial-based technologies such as Terrestrial Laser Scanner (TLS) or Mobile Laser Scanner. 'FORTLS' enables (i) detection of trees and estimation of tree-level attributes (e.g. diameters and heights), (ii) estimation of stand-level variables (e.g. density, basal area, mean and dominant height), (iii) computation of metrics related to important forest attributes estimated in Forest Inventories at stand-level, and (iv) optimization of plot design for combining TLS data and field measured data. Documentation about 'FORTLS' is described in Molina-Valero et al. (2022, <doi:10.1016/j.envsoft.2022.105337>).
Author: Juan Alberto Molina-Valero [aut, cph, cre],
Adela Martinez-Calvo [aut, com],
Juan Gabriel Alvarez-Gonzalez [aut, ths],
Fernando Montes [aut],
Cesar Perez-Cruzado [aut, ths]
Maintainer: Juan Alberto Molina-Valero <jamolinavalero@gmail.com>
This is a re-admission after prior archival of version 1.6.2 dated 2026-01-19
Diff between FORTLS versions 1.6.2 dated 2026-01-19 and 2.0.0 dated 2026-04-10
FORTLS-1.6.2/FORTLS/R/stem.analysis.R |only FORTLS-2.0.0/FORTLS/DESCRIPTION | 8 FORTLS-2.0.0/FORTLS/MD5 | 36 - FORTLS-2.0.0/FORTLS/NAMESPACE | 4 FORTLS-2.0.0/FORTLS/R/auxiliary.functions.R | 26 FORTLS-2.0.0/FORTLS/R/normalize.R | 393 ++++++------- FORTLS-2.0.0/FORTLS/R/straightness.R |only FORTLS-2.0.0/FORTLS/R/tree.detection.multi.scan.R | 320 +++++----- FORTLS-2.0.0/FORTLS/R/tree.detection.several.plots.R | 2 FORTLS-2.0.0/FORTLS/R/tree.detection.single.scan.R | 301 +++++---- FORTLS-2.0.0/FORTLS/build/partial.rdb |binary FORTLS-2.0.0/FORTLS/build/vignette.rds |binary FORTLS-2.0.0/FORTLS/inst/doc/plot_design_optimization.html | 4 FORTLS-2.0.0/FORTLS/inst/doc/tree_level.html | 94 +-- FORTLS-2.0.0/FORTLS/inst/python/geometric_features.py | 150 ++-- FORTLS-2.0.0/FORTLS/man/install_fortls_python_deps.Rd | 32 - FORTLS-2.0.0/FORTLS/man/normalize.Rd | 11 FORTLS-2.0.0/FORTLS/man/tree.detection.multi.scan.Rd | 11 FORTLS-2.0.0/FORTLS/man/tree.detection.several.plots.Rd | 17 FORTLS-2.0.0/FORTLS/man/tree.detection.single.scan.Rd | 15 20 files changed, 755 insertions(+), 669 deletions(-)
Title: Centrality-Based Pathway Enrichment
Description: It aims to find significant pathways through
network topology information. It has several advantages compared
with current pathway enrichment tools. First, pathway node instead
of single gene is taken as the basic unit when analysing networks
to meet the fact that genes must be constructed into complexes to
hold normal functions. Second, multiple network centrality measures are
applied simultaneously to measure importance of nodes from different
aspects to make a full view on the biological system. CePa extends
standard pathway enrichment methods, which include both over-representation
analysis procedure and gene-set analysis procedure.
<doi:10.1093/bioinformatics/btt008>.
Author: Zuguang Gu [aut, cre]
Maintainer: Zuguang Gu <guzuguang@suat-sz.edu.cn>
Diff between CePa versions 0.8.1 dated 2024-10-08 and 0.8.2 dated 2026-04-10
DESCRIPTION | 14 +++++++------- MD5 | 10 +++++----- inst/doc/CePa.pdf |binary inst/doc/analysis-p53.pdf |binary inst/doc/parsing-PID-pathway-data.pdf |binary man/report.Rd | 5 +---- 6 files changed, 13 insertions(+), 16 deletions(-)
Title: Boosted Multivariate Trees for Longitudinal Data
Description: Implements Friedman's gradient descent boosting algorithm for modeling longitudinal response using multivariate tree base learners. Longitudinal response could be continuous, binary, nominal or ordinal. A time-covariate interaction effect is modeled using penalized B-splines (P-splines) with estimated adaptive smoothing parameter. Although the package is design for longitudinal data, it can handle cross-sectional data as well. Implementation details are provided in Pande et al. (2017), Mach Learn <DOI:10.1007/s10994-016-5597-1>.
Author: Hemant Ishwaran [aut],
Amol Pande [aut],
Udaya B. Kogalur [aut, cre]
Maintainer: Udaya B. Kogalur <ubk@kogalur.com>
This is a re-admission after prior archival of version 1.5.1 dated 2022-03-10
Diff between boostmtree versions 1.5.1 dated 2022-03-10 and 2.0.0 dated 2026-04-10
boostmtree-1.5.1/boostmtree/R/marginalPlot.R |only boostmtree-1.5.1/boostmtree/R/partialPlot.R |only boostmtree-1.5.1/boostmtree/R/vimpPlot.R |only boostmtree-1.5.1/boostmtree/inst/NEWS |only boostmtree-1.5.1/boostmtree/man/marginalPlot.Rd |only boostmtree-1.5.1/boostmtree/man/partialPlot.Rd |only boostmtree-1.5.1/boostmtree/man/vimpPlot.Rd |only boostmtree-2.0.0/boostmtree/DESCRIPTION | 21 boostmtree-2.0.0/boostmtree/MD5 | 73 boostmtree-2.0.0/boostmtree/NAMESPACE | 29 boostmtree-2.0.0/boostmtree/NEWS.md |only boostmtree-2.0.0/boostmtree/R/boostmtree.R | 1218 ++--------- boostmtree-2.0.0/boostmtree/R/boostmtree.news.R | 68 boostmtree-2.0.0/boostmtree/R/boostmtree_control.R |only boostmtree-2.0.0/boostmtree/R/boostmtree_display.R |only boostmtree-2.0.0/boostmtree/R/boostmtree_fit_tree.R |only boostmtree-2.0.0/boostmtree/R/boostmtree_math.R |only boostmtree-2.0.0/boostmtree/R/boostmtree_object.R |only boostmtree-2.0.0/boostmtree/R/boostmtree_preprocess.R |only boostmtree-2.0.0/boostmtree/R/boostmtree_response.R |only boostmtree-2.0.0/boostmtree/R/generic.predict.boostmtree.R | 1226 +++++------- boostmtree-2.0.0/boostmtree/R/marginal_plot.boostmtree.R |only boostmtree-2.0.0/boostmtree/R/partial_plot.boostmtree.R |only boostmtree-2.0.0/boostmtree/R/plot.boostmtree.R | 470 +--- boostmtree-2.0.0/boostmtree/R/plot.vimp.boostmtree.R |only boostmtree-2.0.0/boostmtree/R/predict.boostmtree.R | 111 - boostmtree-2.0.0/boostmtree/R/print.boostmtree.R | 228 -- boostmtree-2.0.0/boostmtree/R/simLong.R | 267 +- boostmtree-2.0.0/boostmtree/R/utilities.R | 606 +---- boostmtree-2.0.0/boostmtree/R/vimp.boostmtree.R | 1021 +++++---- boostmtree-2.0.0/boostmtree/R/zzz.R | 66 boostmtree-2.0.0/boostmtree/data/AF.RData |binary boostmtree-2.0.0/boostmtree/data/spirometry.RData |binary boostmtree-2.0.0/boostmtree/inst/CITATION | 8 boostmtree-2.0.0/boostmtree/inst/copyright |only boostmtree-2.0.0/boostmtree/man/AF.Rd | 34 boostmtree-2.0.0/boostmtree/man/boostmtree.Rd | 912 +++++--- boostmtree-2.0.0/boostmtree/man/boostmtree.control.Rd |only boostmtree-2.0.0/boostmtree/man/boostmtree.news.Rd | 2 boostmtree-2.0.0/boostmtree/man/boostmtree_package.Rd | 56 boostmtree-2.0.0/boostmtree/man/marginal.plot.boostmtree.Rd |only boostmtree-2.0.0/boostmtree/man/partial.plot.boostmtree.Rd |only boostmtree-2.0.0/boostmtree/man/plot.boostmtree.Rd | 130 + boostmtree-2.0.0/boostmtree/man/plot.vimp.boostmtree.Rd |only boostmtree-2.0.0/boostmtree/man/predict.boostmtree.Rd | 489 ++-- boostmtree-2.0.0/boostmtree/man/print.boostmtree.Rd | 84 boostmtree-2.0.0/boostmtree/man/simLong.Rd | 131 - boostmtree-2.0.0/boostmtree/man/spirometry.Rd | 19 boostmtree-2.0.0/boostmtree/man/vimp.boostmtree.Rd | 180 + 49 files changed, 3214 insertions(+), 4235 deletions(-)
Title: Word Puzzle Game
Description: The word puzzle game requires you to find out the letters in a word within a limited number of guesses. In each round, if your guess hit any letters in the word, they reveal themselves. If all letters are revealed before your guesses run out, you win this game; otherwise you fail. You may run multiple games to guess different words.
Author: Xiurui Zhu [aut, cre],
@olivroy [ctb]
Maintainer: Xiurui Zhu <zxr6@163.com>
Diff between wordPuzzleR versions 0.1.1 dated 2024-02-24 and 0.1.2 dated 2026-04-10
DESCRIPTION | 12 +++---- MD5 | 10 +++--- NAMESPACE | 14 ++++----- NEWS.md | 9 +++++ README.md | 6 +-- man/wordPuzzleR-package.Rd | 68 ++++++++++++++++++++++----------------------- 6 files changed, 63 insertions(+), 56 deletions(-)
Title: Deploy Docs, Apps, and APIs to 'Posit Connect', 'shinyapps.io',
and 'RPubs'
Description: Programmatic deployment interface for 'RPubs',
'shinyapps.io', and 'Posit Connect'. Supported content types include R
Markdown documents, Shiny applications, Plumber APIs, plots, and
static web content.
Author: Aron Atkins [aut, cre],
Toph Allen [aut],
Hadley Wickham [aut],
Jonathan McPherson [aut],
JJ Allaire [aut],
Posit Software, PBC [cph, fnd]
Maintainer: Aron Atkins <aron@posit.co>
Diff between rsconnect versions 1.7.0 dated 2025-12-06 and 1.8.0 dated 2026-04-10
rsconnect-1.7.0/rsconnect/R/http-curl.R |only rsconnect-1.7.0/rsconnect/R/http-internal.R |only rsconnect-1.7.0/rsconnect/R/http-rcurl.R |only rsconnect-1.7.0/rsconnect/R/servers-deprec.R |only rsconnect-1.7.0/rsconnect/R/static-analysis.R |only rsconnect-1.7.0/rsconnect/man/addConnectServer.Rd |only rsconnect-1.7.0/rsconnect/man/authorizedUsers.Rd |only rsconnect-1.7.0/rsconnect/man/discoverServers.Rd |only rsconnect-1.7.0/rsconnect/tests/testthat/_snaps/servers-deprec.md |only rsconnect-1.7.0/rsconnect/tests/testthat/test-http-curl.R |only rsconnect-1.7.0/rsconnect/tests/testthat/test-http-internal.R |only rsconnect-1.7.0/rsconnect/tests/testthat/test-http-rcurl.R |only rsconnect-1.7.0/rsconnect/tests/testthat/test-servers-deprec.R |only rsconnect-1.8.0/rsconnect/DESCRIPTION | 18 rsconnect-1.8.0/rsconnect/MD5 | 114 ++--- rsconnect-1.8.0/rsconnect/NAMESPACE | 3 rsconnect-1.8.0/rsconnect/NEWS.md | 51 ++ rsconnect-1.8.0/rsconnect/R/accounts.R | 64 +++ rsconnect-1.8.0/rsconnect/R/appMetadata.R | 11 rsconnect-1.8.0/rsconnect/R/applications.R | 90 ---- rsconnect-1.8.0/rsconnect/R/auth.R | 8 rsconnect-1.8.0/rsconnect/R/bundle.R | 39 +- rsconnect-1.8.0/rsconnect/R/bundlePackage.R | 5 rsconnect-1.8.0/rsconnect/R/bundlePackageRenv.R | 70 ++- rsconnect-1.8.0/rsconnect/R/client-connect.R | 195 +++++----- rsconnect-1.8.0/rsconnect/R/client-connectCloud.R | 3 rsconnect-1.8.0/rsconnect/R/client-identityFederation.R |only rsconnect-1.8.0/rsconnect/R/client.R | 20 - rsconnect-1.8.0/rsconnect/R/configureApp.R | 8 rsconnect-1.8.0/rsconnect/R/deployApp.R | 45 -- rsconnect-1.8.0/rsconnect/R/http-httr2.R |only rsconnect-1.8.0/rsconnect/R/http.R | 172 +++++--- rsconnect-1.8.0/rsconnect/R/ide.R | 17 rsconnect-1.8.0/rsconnect/R/rpubs.R | 16 rsconnect-1.8.0/rsconnect/R/servers.R | 16 rsconnect-1.8.0/rsconnect/R/writeManifest.R | 2 rsconnect-1.8.0/rsconnect/man/addServer.Rd | 5 rsconnect-1.8.0/rsconnect/man/connectSPCSUser.Rd | 11 rsconnect-1.8.0/rsconnect/man/deployApp.Rd | 9 rsconnect-1.8.0/rsconnect/man/options.Rd | 15 rsconnect-1.8.0/rsconnect/man/showLogs.Rd | 8 rsconnect-1.8.0/rsconnect/man/writeManifest.Rd | 7 rsconnect-1.8.0/rsconnect/tests/integration |only rsconnect-1.8.0/rsconnect/tests/shinyapps-integration |only rsconnect-1.8.0/rsconnect/tests/testthat/_snaps/appMetadata.md | 9 rsconnect-1.8.0/rsconnect/tests/testthat/_snaps/bundlePackage.md | 16 rsconnect-1.8.0/rsconnect/tests/testthat/_snaps/bundlePackageRenv.md | 2 rsconnect-1.8.0/rsconnect/tests/testthat/_snaps/client-connect.md | 22 + rsconnect-1.8.0/rsconnect/tests/testthat/_snaps/deployApp.md | 11 rsconnect-1.8.0/rsconnect/tests/testthat/_snaps/http.md | 10 rsconnect-1.8.0/rsconnect/tests/testthat/helper.R | 38 - rsconnect-1.8.0/rsconnect/tests/testthat/test-accounts.R | 80 ++++ rsconnect-1.8.0/rsconnect/tests/testthat/test-appMetadata.R | 8 rsconnect-1.8.0/rsconnect/tests/testthat/test-bundle.R | 23 + rsconnect-1.8.0/rsconnect/tests/testthat/test-bundlePackage.R | 92 ++++ rsconnect-1.8.0/rsconnect/tests/testthat/test-bundlePackageRenv.R | 122 +++++- rsconnect-1.8.0/rsconnect/tests/testthat/test-cert.R | 32 - rsconnect-1.8.0/rsconnect/tests/testthat/test-client-connect.R | 88 ++++ rsconnect-1.8.0/rsconnect/tests/testthat/test-deployApp.R | 7 rsconnect-1.8.0/rsconnect/tests/testthat/test-http-httr2.R |only rsconnect-1.8.0/rsconnect/tests/testthat/test-http-libcurl.R | 4 rsconnect-1.8.0/rsconnect/tests/testthat/test-http.R | 5 rsconnect-1.8.0/rsconnect/tests/testthat/test-identityFederation.R |only rsconnect-1.8.0/rsconnect/tests/testthat/test-spcs.R | 81 ++++ rsconnect-1.8.0/rsconnect/tests/testthat/test-writeManifest.R | 61 +++ 65 files changed, 1174 insertions(+), 559 deletions(-)
Title: Write Reusable, Composable and Modular R Code
Description: A modern module system for R. Organise code into hierarchical,
composable, reusable modules, and use it effortlessly across projects via a
flexible, declarative dependency loading syntax.
Author: Konrad Rudolph [aut, cre] ,
Michael Schubert [ctb]
Maintainer: Konrad Rudolph <konrad.rudolph@gmail.com>
Diff between box versions 1.2.1 dated 2025-11-28 and 1.2.2 dated 2026-04-10
DESCRIPTION | 6 +-- LICENSE | 2 - MD5 | 47 +++++++++++++------------ NEWS.md | 7 +++ R/S3.r | 4 +- build/vignette.rds |binary inst/doc/box.html | 9 ++-- inst/doc/box.rmd | 2 - inst/doc/compiled-code.html | 7 +-- inst/doc/contributing.html | 7 +-- inst/doc/faq.html | 7 +-- inst/doc/migration.html | 7 +-- inst/doc/mod-envs.html | 9 ++-- inst/doc/related.html | 6 +-- inst/doc/related.rmd | 2 - inst/doc/testing.html | 7 +-- man/register_S3_method.Rd | 4 +- src/lookup.c | 36 +++++++++++++------ tests/testthat/helper-expect.r | 68 +++++++++++++++++++++++++++---------- tests/testthat/mod/active2.r |only tests/testthat/test-active.r | 27 ++++++++++++++ tests/testthat/test-expectations.r | 32 +++++++++++++++++ tests/testthat/test-reload.r | 2 - vignettes/box.rmd | 2 - vignettes/related.rmd | 2 - 25 files changed, 203 insertions(+), 99 deletions(-)
Title: Read and Write ODS Files
Description: Read ODS (OpenDocument Spreadsheet) into R as data frame. Also support writing data frame into ODS file.
Author: Gerrit-Jan Schutten [aut],
Chung-hong Chan [aut, cre] ,
Peter Brohan [aut],
Detlef Steuer [aut] ,
Thomas J. Leeper [aut] ,
John Foster [ctb],
Sergio Oller [ctb],
Jim Hester [ctb] ,
Stephen Watts [ctb],
Arthur Katossky [ctb],
Stas Malavin [ctb],
Dunca [...truncated...]
Maintainer: Chung-hong Chan <chainsawtiney@gmail.com>
Diff between readODS versions 2.3.2 dated 2025-01-13 and 2.3.4 dated 2026-04-10
DESCRIPTION | 25 MD5 | 64 NAMESPACE | 2 NEWS.md | 12 R/readODS-package.R | 3 R/read_ods.R | 168 + R/utils.R | 8 R/write_ods.R | 2 build/vignette.rds |binary inst/WORDLIST | 4 man/readODS-package.Rd | 1 man/readODS_progress.Rd |only man/read_ods.Rd | 12 src/cpp11.cpp | 32 src/get_sheet_names.cpp | 182 - src/is_ods.cpp | 208 - src/is_ods.h | 6 src/rapidxml/rapidxml.hpp | 4873 +++++++++++++++++------------------- src/rapidxml/rapidxml_ext.hpp | 32 src/rapidxml/rapidxml_iterators.hpp | 276 -- src/rapidxml/rapidxml_print.hpp | 802 +++-- src/rapidxml/rapidxml_utils.hpp | 192 - src/read_flat_ods_.cpp | 102 src/read_ods_.cpp | 75 src/read_ods_internals.cpp | 513 ++- src/read_ods_internals.h | 35 src/readxl/zip.cpp | 8 src/readxl/zip.h | 5 src/splice.cpp | 175 - src/splice.h | 10 src/write_sheet_file_.cpp | 346 +- src/write_sheet_file_.h | 20 tests/testthat/test_progress.R |only tests/testthat/test_write_ods.R | 29 34 files changed, 4339 insertions(+), 3883 deletions(-)
Title: Fast Unified Random Forests for Survival, Regression, and
Classification (RF-SRC)
Description: Fast OpenMP parallel computing of Breiman's random forests for univariate, multivariate, unsupervised, survival, competing risks, class imbalanced classification and quantile regression. New Mahalanobis splitting for correlated outcomes. Extreme random forests and randomized splitting. Suite of imputation methods for missing data. Fast random forests using subsampling. Confidence regions and standard errors for variable importance. New improved holdout importance. Case-specific importance. Minimal depth variable importance. Visualize trees on your Safari or Google Chrome browser. Anonymous random forests for data privacy.
Author: Hemant Ishwaran [aut],
Udaya B. Kogalur [aut, cre]
Maintainer: Udaya B. Kogalur <ubk@kogalur.com>
Diff between randomForestSRC versions 3.6.0 dated 2026-03-25 and 3.6.1 dated 2026-04-10
randomForestSRC-3.6.0/randomForestSRC/inst/NEWS |only randomForestSRC-3.6.1/randomForestSRC/DESCRIPTION | 8 randomForestSRC-3.6.1/randomForestSRC/MD5 | 19 randomForestSRC-3.6.1/randomForestSRC/NAMESPACE | 2 randomForestSRC-3.6.1/randomForestSRC/NEWS.md |only randomForestSRC-3.6.1/randomForestSRC/R/generic.predict.rfsrc.R | 2 randomForestSRC-3.6.1/randomForestSRC/R/impute.learn.rfsrc.R | 371 +++++++--- randomForestSRC-3.6.1/randomForestSRC/R/rfsrc.R | 4 randomForestSRC-3.6.1/randomForestSRC/R/utilities_impute.R | 1 randomForestSRC-3.6.1/randomForestSRC/R/utilities_impute.learn.R | 351 +++++++++ randomForestSRC-3.6.1/randomForestSRC/man/impute.learn.rfsrc.Rd | 187 ++++- randomForestSRC-3.6.1/randomForestSRC/src/Makevars |only 12 files changed, 793 insertions(+), 152 deletions(-)
More information about randomForestSRC at CRAN
Permanent link
Title: Portfolio Analysis, Including Numerical Methods for Optimization
of Portfolios
Description: Portfolio optimization and analysis routines and graphics.
Author: Brian G. Peterson [cre, aut, cph],
Peter Carl [aut, cph],
Ross Bennett [ctb, cph],
Kris Boudt [ctb, cph],
Xinran Zhao [ctb, cph],
R. Douglas Martin [ctb],
Guy Yollin [ctb],
Hezky Varon [ctb],
Xiaokang Feng [ctb],
Yifu Kang [ctb]
Maintainer: Brian G. Peterson <brian@braverock.com>
Diff between PortfolioAnalytics versions 2.1.1 dated 2026-02-04 and 2.1.2 dated 2026-04-10
DESCRIPTION | 8 MD5 | 61 NAMESPACE | 1 R/ac_ranking.R | 144 - R/applyFUN.R | 11 R/charts.efficient.frontier.R | 4 R/extract.efficient.frontier.R | 95 + R/extractrisk.R | 46 R/optimize.portfolio.R | 2604 +++++++++++++++++---------------- R/plotFrontiers.R | 27 build/vignette.rds |binary demo/demo_JPM2024MinDownsideRiskCVXR.R | 16 inst/doc/ROI_vignette.pdf |binary inst/doc/custom_moments_objectives.pdf |binary inst/doc/cvxrPortfolioAnalytics.pdf |binary inst/doc/portfolio_vignette.pdf |binary inst/doc/risk_budget_optimization.pdf |binary inst/doc/robustCovMatForPA.pdf |binary man/MycovRobMcd.Rd | 2 man/MycovRobTSGS.Rd | 2 man/ac.ranking.Rd | 16 man/centroid.buckets.Rd | 6 man/centroid.complete.mc.Rd | 6 man/centroid.sectors.Rd | 2 man/centroid.sign.Rd | 8 man/extract_risk.Rd | 11 man/meaneqs.efficient.frontier.Rd |only man/meanrisk.efficient.frontier.Rd | 4 man/optimize.portfolio.Rd | 48 man/optimize.portfolio.parallel.Rd | 8 man/optimize.portfolio.rebalancing.Rd | 76 man/plotFrontiers.Rd | 23 32 files changed, 1718 insertions(+), 1511 deletions(-)
More information about PortfolioAnalytics at CRAN
Permanent link
Title: Nonlinear Nonparametric Statistics
Description: NNS (Nonlinear Nonparametric Statistics) leverages partial moments – the fundamental elements of variance that asymptotically approximate the area under f(x) – to provide a robust foundation for nonlinear analysis while maintaining linear equivalences. Designed for real-world data that violates symmetry, linearity, or distributional assumptions, NNS delivers a comprehensive suite of advanced statistical techniques, including: Numerical integration, Numerical differentiation, Clustering, Correlation, Dependence, Causal analysis, ANOVA, Regression, Classification, Seasonality, Autoregressive modeling, Normalization, Stochastic superiority / dominance and Advanced Monte Carlo sampling. All routines based on: Viole, F. and Nawrocki, D. (2013), Nonlinear Nonparametric Statistics: Using Partial Moments (ISBN: 1490523995, Second edition: <https://ovvo-financial.github.io/NNS/book/>).
Author: Fred Viole [aut, cre],
Roberto Spadim [ctb]
Maintainer: Fred Viole <ovvo.open.source@gmail.com>
Diff between NNS versions 11.6.5 dated 2026-03-11 and 12.0 dated 2026-04-10
NNS-11.6.5/NNS/R/Dependence_matrix.R |only NNS-11.6.5/NNS/R/NNS_term_matrix.R |only NNS-11.6.5/NNS/man/NNS.term.matrix.Rd |only NNS-12.0/NNS/DESCRIPTION | 13 NNS-12.0/NNS/MD5 | 167 +- NNS-12.0/NNS/NAMESPACE | 2 NNS-12.0/NNS/R/ANOVA.R | 110 - NNS-12.0/NNS/R/ARMA.R | 2 NNS-12.0/NNS/R/ARMA_optim.R | 2 NNS-12.0/NNS/R/Binary_ANOVA.R | 11 NNS-12.0/NNS/R/Boost.R | 263 ++-- NNS-12.0/NNS/R/Causation.R | 2 NNS-12.0/NNS/R/Dependence.R | 309 +++-- NNS-12.0/NNS/R/LPM_UPM_VaR.R | 4 NNS-12.0/NNS/R/NNS-package.R | 2 NNS-12.0/NNS/R/NNS_VAR.R | 2 NNS-12.0/NNS/R/Normalization.R | 2 NNS-12.0/NNS/R/Nowcast.R | 2 NNS-12.0/NNS/R/Numerical_Differentiation.R | 441 ++++--- NNS-12.0/NNS/R/Partial_Moments.R | 30 NNS-12.0/NNS/R/Partition_Map.R | 2 NNS-12.0/NNS/R/RcppExports.R | 12 NNS-12.0/NNS/R/Regression.R | 2 NNS-12.0/NNS/R/Seasonality_Test.R | 2 NNS-12.0/NNS/R/Stack.R | 167 ++ NNS-12.0/NNS/R/Stochastic_superiority.R |only NNS-12.0/NNS/R/dy_d_wrt.R | 2 NNS-12.0/NNS/R/dy_dx.R | 2 NNS-12.0/NNS/README.md | 12 NNS-12.0/NNS/build/vignette.rds |binary NNS-12.0/NNS/inst/doc/NNSvignette_Classification.Rmd | 4 NNS-12.0/NNS/inst/doc/NNSvignette_Classification.html | 66 - NNS-12.0/NNS/inst/doc/NNSvignette_Clustering_and_Regression.Rmd | 21 NNS-12.0/NNS/inst/doc/NNSvignette_Clustering_and_Regression.html | 20 NNS-12.0/NNS/inst/doc/NNSvignette_Comparing_Distributions.R | 36 NNS-12.0/NNS/inst/doc/NNSvignette_Comparing_Distributions.Rmd | 82 + NNS-12.0/NNS/inst/doc/NNSvignette_Comparing_Distributions.html | 123 +- NNS-12.0/NNS/inst/doc/NNSvignette_Correlation_and_Dependence.Rmd | 10 NNS-12.0/NNS/inst/doc/NNSvignette_Correlation_and_Dependence.html | 22 NNS-12.0/NNS/inst/doc/NNSvignette_Forecasting.Rmd | 4 NNS-12.0/NNS/inst/doc/NNSvignette_Forecasting.html | 2 NNS-12.0/NNS/inst/doc/NNSvignette_Normalization_and_Rescaling.Rmd | 4 NNS-12.0/NNS/inst/doc/NNSvignette_Normalization_and_Rescaling.html | 2 NNS-12.0/NNS/inst/doc/NNSvignette_Overview.R | 44 NNS-12.0/NNS/inst/doc/NNSvignette_Overview.Rmd | 218 ++- NNS-12.0/NNS/inst/doc/NNSvignette_Overview.html | 590 ++++++---- NNS-12.0/NNS/inst/doc/NNSvignette_Partial_Moments.R | 2 NNS-12.0/NNS/inst/doc/NNSvignette_Partial_Moments.Rmd | 16 NNS-12.0/NNS/inst/doc/NNSvignette_Partial_Moments.html | 6 NNS-12.0/NNS/inst/doc/NNSvignette_Sampling.Rmd | 4 NNS-12.0/NNS/inst/doc/NNSvignette_Sampling.html | 2 NNS-12.0/NNS/man/LPM.Rd | 13 NNS-12.0/NNS/man/LPM.VaR.Rd | 2 NNS-12.0/NNS/man/NNS.ANOVA.Rd | 8 NNS-12.0/NNS/man/NNS.ARMA.Rd | 2 NNS-12.0/NNS/man/NNS.ARMA.optim.Rd | 2 NNS-12.0/NNS/man/NNS.CDF.Rd | 2 NNS-12.0/NNS/man/NNS.Rd | 3 NNS-12.0/NNS/man/NNS.SS.Rd |only NNS-12.0/NNS/man/NNS.VAR.Rd | 2 NNS-12.0/NNS/man/NNS.boost.Rd | 3 NNS-12.0/NNS/man/NNS.caus.Rd | 2 NNS-12.0/NNS/man/NNS.dep.Rd | 92 - NNS-12.0/NNS/man/NNS.diff.Rd | 29 NNS-12.0/NNS/man/NNS.moments.Rd | 2 NNS-12.0/NNS/man/NNS.norm.Rd | 2 NNS-12.0/NNS/man/NNS.nowcast.Rd | 2 NNS-12.0/NNS/man/NNS.part.Rd | 2 NNS-12.0/NNS/man/NNS.reg.Rd | 2 NNS-12.0/NNS/man/NNS.seas.Rd | 2 NNS-12.0/NNS/man/UPM.Rd | 13 NNS-12.0/NNS/man/UPM.VaR.Rd | 2 NNS-12.0/NNS/man/dy.d_.Rd | 2 NNS-12.0/NNS/man/dy.dx.Rd | 2 NNS-12.0/NNS/src/NNS_dep.cpp |only NNS-12.0/NNS/src/RcppExports.cpp | 42 NNS-12.0/NNS/src/internal_functions.cpp | 8 NNS-12.0/NNS/src/stoch_sup.cpp |only NNS-12.0/NNS/tests/testthat/Rplots.pdf |binary NNS-12.0/NNS/vignettes/NNSvignette_Classification.Rmd | 4 NNS-12.0/NNS/vignettes/NNSvignette_Clustering_and_Regression.Rmd | 21 NNS-12.0/NNS/vignettes/NNSvignette_Comparing_Distributions.Rmd | 82 + NNS-12.0/NNS/vignettes/NNSvignette_Correlation_and_Dependence.Rmd | 10 NNS-12.0/NNS/vignettes/NNSvignette_Forecasting.Rmd | 4 NNS-12.0/NNS/vignettes/NNSvignette_Normalization_and_Rescaling.Rmd | 4 NNS-12.0/NNS/vignettes/NNSvignette_Overview.Rmd | 218 ++- NNS-12.0/NNS/vignettes/NNSvignette_Partial_Moments.Rmd | 16 NNS-12.0/NNS/vignettes/NNSvignette_Sampling.Rmd | 4 88 files changed, 2222 insertions(+), 1225 deletions(-)
Title: Solve Systems of Nonlinear Equations
Description: Solve a system of nonlinear equations using a Broyden or a Newton method
with a choice of global strategies such as line search and trust region.
There are options for using a numerical or user supplied Jacobian,
for specifying a banded numerical Jacobian and for allowing
a singular or ill-conditioned Jacobian.
Author: Berend Hasselman [aut] ,
Rob Carnell [aut, cre]
Maintainer: Rob Carnell <bertcarnell@gmail.com>
Diff between nleqslv versions 3.3.6 dated 2026-03-05 and 3.3.7 dated 2026-04-10
nleqslv-3.3.6/nleqslv/build |only nleqslv-3.3.6/nleqslv/inst |only nleqslv-3.3.6/nleqslv/man/print.testnslv.Rd |only nleqslv-3.3.6/nleqslv/man/searchzeros.Rd |only nleqslv-3.3.6/nleqslv/man/zznleqslv-iterationreport.Rd |only nleqslv-3.3.6/nleqslv/tests/brdban.R |only nleqslv-3.3.6/nleqslv/tests/brdban.Rout.save |only nleqslv-3.3.6/nleqslv/tests/brdbanded.R |only nleqslv-3.3.6/nleqslv/tests/brdbanded.Rout.save |only nleqslv-3.3.6/nleqslv/tests/brdtri.R |only nleqslv-3.3.6/nleqslv/tests/brdtri.Rout.save |only nleqslv-3.3.6/nleqslv/tests/brdtrijac.R |only nleqslv-3.3.6/nleqslv/tests/brdtrijac.Rout.save |only nleqslv-3.3.6/nleqslv/tests/chquad.R |only nleqslv-3.3.6/nleqslv/tests/chquad.Rout.save |only nleqslv-3.3.6/nleqslv/tests/control-try.R |only nleqslv-3.3.6/nleqslv/tests/control-try.Rout.save |only nleqslv-3.3.6/nleqslv/tests/dslnex.R |only nleqslv-3.3.6/nleqslv/tests/dslnex.Rout.save |only nleqslv-3.3.6/nleqslv/tests/dslnexCN.R |only nleqslv-3.3.6/nleqslv/tests/dslnexCN.Rout.save |only nleqslv-3.3.6/nleqslv/tests/dslnexHook.R |only nleqslv-3.3.6/nleqslv/tests/dslnexHook.Rout.save |only nleqslv-3.3.6/nleqslv/tests/dslnexauto.R |only nleqslv-3.3.6/nleqslv/tests/dslnexauto.Rout.save |only nleqslv-3.3.6/nleqslv/tests/dslnexjacout.R |only nleqslv-3.3.6/nleqslv/tests/dslnexjacout.Rout.save |only nleqslv-3.3.6/nleqslv/tests/dslnexscaled.R |only nleqslv-3.3.6/nleqslv/tests/dslnexscaled.Rout.save |only nleqslv-3.3.6/nleqslv/tests/singular1.R |only nleqslv-3.3.6/nleqslv/tests/singular1.Rout.save |only nleqslv-3.3.6/nleqslv/tests/singular2.R |only nleqslv-3.3.6/nleqslv/tests/singular2.Rout.save |only nleqslv-3.3.6/nleqslv/tests/singular3.R |only nleqslv-3.3.6/nleqslv/tests/singular3.Rout.save |only nleqslv-3.3.6/nleqslv/tests/trig.R |only nleqslv-3.3.6/nleqslv/tests/trig.Rout.save |only nleqslv-3.3.6/nleqslv/tests/tscalargrad.R |only nleqslv-3.3.6/nleqslv/tests/tscalargrad.Rout.save |only nleqslv-3.3.6/nleqslv/tests/xcutlip1p2.R |only nleqslv-3.3.6/nleqslv/tests/xcutlip1p2.Rout.save |only nleqslv-3.3.6/nleqslv/tests/xnames.R |only nleqslv-3.3.6/nleqslv/tests/xnames.Rout.save |only nleqslv-3.3.6/nleqslv/tests/xsearchzeros.R |only nleqslv-3.3.6/nleqslv/tests/xsearchzeros.Rout.save |only nleqslv-3.3.6/nleqslv/tests/xtestnslv.R |only nleqslv-3.3.6/nleqslv/tests/xtestnslv.Rout.save |only nleqslv-3.3.7/nleqslv/DESCRIPTION | 13 nleqslv-3.3.7/nleqslv/MD5 | 119 +-- nleqslv-3.3.7/nleqslv/NAMESPACE | 9 nleqslv-3.3.7/nleqslv/NEWS | 6 nleqslv-3.3.7/nleqslv/R/nleqslv-iterationreport.R |only nleqslv-3.3.7/nleqslv/R/nleqslv-package.R |only nleqslv-3.3.7/nleqslv/R/nleqslv.R | 523 +++++++++++++-- nleqslv-3.3.7/nleqslv/R/searchzeros.R | 226 ++++-- nleqslv-3.3.7/nleqslv/R/testnslv.R | 301 ++++++--- nleqslv-3.3.7/nleqslv/man/figures |only nleqslv-3.3.7/nleqslv/man/nleqslv-iterationreport.Rd |only nleqslv-3.3.7/nleqslv/man/nleqslv-package.Rd | 78 +- nleqslv-3.3.7/nleqslv/man/nleqslv.Rd | 559 ++++++++--------- nleqslv-3.3.7/nleqslv/man/print.test.nleqslv.Rd |only nleqslv-3.3.7/nleqslv/man/searchZeros.Rd |only nleqslv-3.3.7/nleqslv/man/testnslv.Rd | 122 ++- nleqslv-3.3.7/nleqslv/src/init.c | 4 nleqslv-3.3.7/nleqslv/src/nleqslv.c | 60 - nleqslv-3.3.7/nleqslv/tests/testthat |only nleqslv-3.3.7/nleqslv/tests/testthat.R |only 67 files changed, 1299 insertions(+), 721 deletions(-)
Title: Mixed-Effects Diffusion Models with General Drift
Description: Provides tools for likelihood-based inference in one-dimensional stochastic differential equations with mixed effects using expectation–maximization (EM) algorithms. The package supports Wiener and Ornstein–Uhlenbeck diffusion processes with user-specified drift functions, allowing flexible parametric forms including polynomial, exponential, and trigonometric structures. Estimation is performed via Markov chain Monte Carlo EM.
Author: Pedro Abraham Montoya Calzada [aut, cre, cph] ,
Rogelio Salinas Gutierrez [aut, cph] ,
Silvia Rodriguez-Narciso [aut, cph] ,
Netzahualcoyotl Castaneda-Leyva [aut, cph]
Maintainer: Pedro Abraham Montoya Calzada <pedroabraham.montoya@gmail.com>
Diff between mixediffusion versions 1.0.0 dated 2026-03-20 and 1.0.1 dated 2026-04-10
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- R/EM_wiener.R | 46 ++++++++++++++++++++++++++-------------------- man/fit_ou.Rd | 2 +- man/fit_wiener.Rd | 6 ++---- 5 files changed, 36 insertions(+), 32 deletions(-)
Title: A General Framework for Latent Classify and Profile Analysis
Description: A unified latent class modeling framework that encompasses both latent class analysis (LCA) and latent profile analysis (LPA), offering a one-stop solution for latent class modeling. It implements state-of-the-art parameter estimation methods, including the expectation–maximization (EM) algorithm, neural network estimation (NNE; requires users to have 'Python' and its dependent libraries installed on their computer), and integration with 'Mplus' (requires users to have 'Mplus' installed on their computer). In addition, it provides commonly used model fit indices such as the Akaike information criterion (AIC) and Bayesian information criterion (BIC), as well as classification accuracy measures such as entropy. The package also includes fully functional likelihood ratio tests (LRT) and bootstrap likelihood ratio tests (BLRT) to facilitate model comparison, along with bootstrap-based and observed information matrix-based standard error estimation. Furthermore, it supports the standard thr [...truncated...]
Author: Haijiang Qin [aut, cre, cph] ,
Lei Guo [aut, cph]
Maintainer: Haijiang Qin <haijiang133@outlook.com>
Diff between LCPA versions 1.0.1 dated 2026-02-27 and 1.0.2 dated 2026-04-10
LCPA-1.0.1/LCPA/tests/main_LCA_attention_10.R |only LCPA-1.0.1/LCPA/tests/main_LPA_attention_10.R |only LCPA-1.0.2/LCPA/DESCRIPTION | 37 +- LCPA-1.0.2/LCPA/MD5 | 105 ++++--- LCPA-1.0.2/LCPA/NAMESPACE | 27 ++ LCPA-1.0.2/LCPA/NEWS.md | 11 LCPA-1.0.2/LCPA/R/Kmeans.LCA.R | 6 LCPA-1.0.2/LCPA/R/LCA.R | 22 - LCPA-1.0.2/LCPA/R/LCPA.R | 44 +-- LCPA-1.0.2/LCPA/R/LPA.R | 7 LCPA-1.0.2/LCPA/R/LRT.test.Bootstrap.R | 282 +++++++++++++++------ LCPA-1.0.2/LCPA/R/LTA.R | 25 + LCPA-1.0.2/LCPA/R/Mplus.LCA.R | 55 +++- LCPA-1.0.2/LCPA/R/Mplus.LPA.R | 195 ++++++++------ LCPA-1.0.2/LCPA/R/S3plot.R |only LCPA-1.0.2/LCPA/R/S3print.R | 97 ++++--- LCPA-1.0.2/LCPA/R/S3summary.R | 19 - LCPA-1.0.2/LCPA/R/S3update.R | 4 LCPA-1.0.2/LCPA/R/adjust.model.R |only LCPA-1.0.2/LCPA/R/adjust.response.R | 26 - LCPA-1.0.2/LCPA/R/check.response.R | 10 LCPA-1.0.2/LCPA/R/compare.model.R | 2 LCPA-1.0.2/LCPA/R/get.Log.Lik.LCA.R | 6 LCPA-1.0.2/LCPA/R/get.P.Z.Xn.LCA.R | 114 ++------ LCPA-1.0.2/LCPA/R/get.P.Z.Xn.LPA.R | 147 ++++------ LCPA-1.0.2/LCPA/R/get.SE.R | 4 LCPA-1.0.2/LCPA/R/install_python_dependencies.R | 165 ++++++------ LCPA-1.0.2/LCPA/R/normalize.R | 2 LCPA-1.0.2/LCPA/R/plotResponse.R | 28 +- LCPA-1.0.2/LCPA/R/sim.LCA.R | 6 LCPA-1.0.2/LCPA/R/sim.LPA.R | 6 LCPA-1.0.2/LCPA/R/sim.LTA.R | 12 LCPA-1.0.2/LCPA/R/tools.R | 18 - LCPA-1.0.2/LCPA/inst/python/Net_LCA.py | 223 +++++++++------- LCPA-1.0.2/LCPA/inst/python/Net_LPA.py | 272 ++++++++++++-------- LCPA-1.0.2/LCPA/man/Kmeans.LCA.Rd | 6 LCPA-1.0.2/LCPA/man/LCA.Rd | 16 - LCPA-1.0.2/LCPA/man/LCPA.Rd | 26 + LCPA-1.0.2/LCPA/man/LPA.Rd | 5 LCPA-1.0.2/LCPA/man/LRT.test.Bootstrap.Rd | 161 +++++++---- LCPA-1.0.2/LCPA/man/LTA.Rd | 6 LCPA-1.0.2/LCPA/man/adjust.model.Rd |only LCPA-1.0.2/LCPA/man/adjust.response.Rd | 26 - LCPA-1.0.2/LCPA/man/check.response.Rd | 10 LCPA-1.0.2/LCPA/man/get.Log.Lik.LCA.Rd | 6 LCPA-1.0.2/LCPA/man/get.P.Z.Xn.LCA.Rd | 70 +---- LCPA-1.0.2/LCPA/man/get.P.Z.Xn.LPA.Rd | 65 +--- LCPA-1.0.2/LCPA/man/get.SE.Rd | 4 LCPA-1.0.2/LCPA/man/install_python_dependencies.Rd | 8 LCPA-1.0.2/LCPA/man/normalize.Rd | 2 LCPA-1.0.2/LCPA/man/plot.Rd |only LCPA-1.0.2/LCPA/man/plotResponse.Rd | 28 +- LCPA-1.0.2/LCPA/man/sim.LCA.Rd | 6 LCPA-1.0.2/LCPA/man/sim.LTA.Rd | 12 LCPA-1.0.2/LCPA/man/summary.Rd | 4 LCPA-1.0.2/LCPA/tests/building.R | 2 LCPA-1.0.2/LCPA/tests/demo.R |only 57 files changed, 1393 insertions(+), 1047 deletions(-)
Title: Semi-Automatic Grading of R and Rmd Scripts
Description: A customisable set of tools for assessing and grading
R or R-markdown scripts from students. It allows for checking correctness
of code output, runtime statistics and static code analysis. The latter
feature is made possible by representing R expressions using a tree
structure.
Author: Vik Gopal [aut],
Agrawal Naman [aut, cre],
Yuting Huang [ctb],
Samuel Seah [aut],
Viknesh Jeya Kumar [aut],
Gabriel Ang [aut],
Ruofan Liu [ctb],
National University of Singapore [cph]
Maintainer: Agrawal Naman <naman.a@nus.edu.sg>
Diff between autoharp versions 0.2.0 dated 2026-02-19 and 0.3.1 dated 2026-04-10
autoharp-0.2.0/autoharp/inst/examples/1910-tut04 |only autoharp-0.2.0/autoharp/inst/examples/2010-tut02 |only autoharp-0.2.0/autoharp/inst/examples/2010-tut07 |only autoharp-0.2.0/autoharp/inst/examples/2010-tut08 |only autoharp-0.2.0/autoharp/inst/examples/2010-tut09 |only autoharp-0.2.0/autoharp/inst/examples/2210-ass01 |only autoharp-0.2.0/autoharp/inst/examples/2210-ass02 |only autoharp-0.2.0/autoharp/inst/examples/README.md |only autoharp-0.2.0/autoharp/inst/examples/learnr-1910-tut04 |only autoharp-0.2.0/autoharp/inst/examples/learnr-2210-ass02 |only autoharp-0.3.1/autoharp/DESCRIPTION | 29 - autoharp-0.3.1/autoharp/MD5 | 165 ++++------ autoharp-0.3.1/autoharp/NEWS | 13 autoharp-0.3.1/autoharp/NEWS.md |only autoharp-0.3.1/autoharp/R/autoharp.R | 2 autoharp-0.3.1/autoharp/R/nlp_related.R | 2 autoharp-0.3.1/autoharp/R/populate_soln_env.R | 4 autoharp-0.3.1/autoharp/README.md |only autoharp-0.3.1/autoharp/build |only autoharp-0.3.1/autoharp/inst/doc |only autoharp-0.3.1/autoharp/inst/examples/example-01 |only autoharp-0.3.1/autoharp/inst/shiny/grading_app |only autoharp-0.3.1/autoharp/inst/shiny/similarity_app/R/helpers.R | 102 ++++-- autoharp-0.3.1/autoharp/inst/shiny/similarity_app/app.R | 67 +++- autoharp-0.3.1/autoharp/man/autoharp.Rd | 5 autoharp-0.3.1/autoharp/man/figures |only autoharp-0.3.1/autoharp/vignettes |only 27 files changed, 241 insertions(+), 148 deletions(-)
Title: Functions for Stochastic Search Variable Selection (SSVS)
Description: Functions for performing stochastic search variable selection (SSVS)
for binary and continuous outcomes and visualizing the results.
SSVS is a Bayesian variable selection method used to estimate the probability
that individual predictors should be included in a regression model.
Using MCMC estimation, the method samples thousands of regression models
in order to characterize the model uncertainty regarding both the predictor
set and the regression parameters. For details see Bainter, McCauley, Wager,
and Losin (2020) Improving practices for selecting a subset of important
predictors in psychology: An application to predicting pain, Advances in
Methods and Practices in Psychological Science 3(1), 66-80
<DOI:10.1177/2515245919885617>.
Author: Sierra Bainter [cre, aut] ,
Thomas McCauley [aut],
Mahmoud Fahmy [aut],
Dean Attali [aut]
Maintainer: Sierra Bainter <sbainter@miami.edu>
Diff between SSVS versions 2.1.0 dated 2025-03-19 and 2.2.0 dated 2026-04-09
SSVS-2.1.0/SSVS/inst/testdata |only SSVS-2.2.0/SSVS/DESCRIPTION | 15 +-- SSVS-2.2.0/SSVS/MD5 | 29 +++--- SSVS-2.2.0/SSVS/NEWS.md | 6 + SSVS-2.2.0/SSVS/R/SSVS.R | 91 ++++++++++++++----- SSVS-2.2.0/SSVS/R/SSVS_MI.R | 15 ++- SSVS-2.2.0/SSVS/R/imputed_affairs.R |only SSVS-2.2.0/SSVS/R/utils.R | 69 ++++++++++++++ SSVS-2.2.0/SSVS/README.md | 45 ++++----- SSVS-2.2.0/SSVS/data/imputed_affairs.RData |only SSVS-2.2.0/SSVS/man/figures/README-binary-plot-1.png |binary SSVS-2.2.0/SSVS/man/figures/README-plot-1.png |binary SSVS-2.2.0/SSVS/man/imputed_affairs.Rd |only SSVS-2.2.0/SSVS/man/ssvs.Rd | 56 ++++++++--- SSVS-2.2.0/SSVS/man/ssvs_mi.Rd | 15 ++- SSVS-2.2.0/SSVS/tests/testthat/test-ssvs.R | 31 ++++++ SSVS-2.2.0/SSVS/tests/testthat/test-summary.R | 26 ++++- 17 files changed, 307 insertions(+), 91 deletions(-)