Title: The Research Data Warehouse of Miguel de Carvalho
Description: Pulls together a collection of datasets from Miguel de Carvalho research articles and books. Including, for example:
- de Carvalho (2012) <doi:10.1016/j.jspi.2011.08.016>;
- de Carvalho et al (2012) <doi:10.1080/03610926.2012.709905>;
- de Carvalho et al (2012) <doi:10.1016/j.econlet.2011.09.007>);
- de Carvalho and Davison (2014) <doi:10.1080/01621459.2013.872651>;
- de Carvalho and Rua (2017) <doi:10.1016/j.ijforecast.2015.09.004>;
- de Carvalho et al (2023) <doi:10.1002/sta4.560>;
- de Carvalho et al (2022) <doi:10.1007/s13253-021-00469-9>;
- Palacios et al (2025) <doi:10.1214/24-BA1420>.
Author: Miguel de Carvalho [aut, cre]
Maintainer: Miguel de Carvalho <Miguel.deCarvalho@ed.ac.uk>
Diff between DATAstudio versions 1.2.3 dated 2026-02-11 and 1.2.4 dated 2026-05-24
DESCRIPTION | 8 +++---- MD5 | 57 +++++++++++++++++++++++++++++++++++----------------- R/dataset.R | 13 ++++++++++- build |only man/AIG.Rd |only man/DATAstudio.Rd | 15 +++++++------ man/alps.Rd | 3 +- man/bournemouth.Rd |only man/california.Rd | 7 ++---- man/china_storm.Rd |only man/crypto.Rd |only man/danube.Rd | 5 +--- man/dataset.Rd | 9 ++++---- man/epilepsy.Rd | 16 +++++++------- man/eurorain.Rd |only man/faang.Rd | 13 +++++------ man/flights.Rd | 27 ++++++++++++------------ man/fort.Rd |only man/heatwaves.Rd |only man/hongkong.Rd | 5 +--- man/hurricane.Rd | 6 ++--- man/kfrench.Rd |only man/landslide.Rd | 8 ++----- man/lisbon.Rd | 7 ++++-- man/logreturns.Rd |only man/loss.Rd | 8 +++---- man/madeira.Rd | 13 +++++++++-- man/maxtemps.Rd |only man/netherlands.Rd |only man/pandemics.Rd |only man/pnw.Rd |only man/rain_germany.Rd |only man/seine.Rd |only man/sp500a.Rd |only man/streamflow.Rd |only man/sydney.Rd | 7 +++++- man/thefts.Rd | 9 ++++---- man/us_torn.Rd |only man/venice.Rd |only man/waveheights.Rd |only 40 files changed, 141 insertions(+), 95 deletions(-)
Title: Interval Estimation by Likelihood Method
Description: Currently used CI method has its limitation when the test statistics are asymmetrical (chi-square test, F-test) or the model functions are non-linear. It can be overcome by using the likelihood functions for the interval estimation. 'inteli' package now supports interval estimation for the mean, variance, variance ratio, binomial distribution, Poisson distribution, odds ratio, risk difference, relative risk and their likelihood function plots. Testing functions are also provided.
Author: Minkyu Kim [aut, cre],
Kyun-Seop Bae [aut]
Maintainer: Minkyu Kim <mkim@acr.kr>
Diff between inteli versions 0.1.2 dated 2026-01-07 and 0.2.0 dated 2026-05-24
DESCRIPTION | 8 +-- MD5 | 34 +++++++-------- R/lib.R | 100 ++++++++++++++++++++-------------------------- R/lim.R | 100 ++++++++++++++++++++-------------------------- R/liod.R | 108 ++++++++++++++++++++++---------------------------- R/lipois.R | 97 ++++++++++++++++++++------------------------ R/lir.R | 101 ++++++++++++++++++++++------------------------ R/lird.R | 103 +++++++++++++++++++++-------------------------- R/lirr.R | 103 +++++++++++++++++++++-------------------------- R/liv.R | 98 ++++++++++++++++++++------------------------- man/inteli-package.Rd | 2 man/lib.Rd | 1 man/lim.Rd | 46 ++++++++++----------- man/liod.Rd | 54 ++++++++++++------------- man/lir.Rd | 50 +++++++++++------------ man/lird.Rd | 54 ++++++++++++------------- man/lirr.Rd | 54 ++++++++++++------------- man/liv.Rd | 48 +++++++++++----------- 18 files changed, 539 insertions(+), 622 deletions(-)
Title: Genetic Analysis Package
Description: As first reported [Zhao, J. H. 2007. "gap: Genetic Analysis Package". J Stat Soft 23(8):1-18.
<doi:10.18637/jss.v023.i08>], it is designed as an integrated package for genetic data
analysis of both population and family data. Currently, it contains functions for
sample size calculations of both population-based and family-based designs, probability
of familial disease aggregation, kinship calculation, statistics in linkage analysis,
and association analysis involving genetic markers including haplotype analysis with or
without environmental covariates. Over years, the package has been developed in-between
many projects hence also in line with the name (gap).
Author: Jing Hua Zhao [aut, cre] ,
Kurt Hornik [ctb],
Brian Ripley [ctb],
Uwe Ligges [ctb],
Achim Zeileis [ctb]
Maintainer: Jing Hua Zhao <jinghuazhao@hotmail.com>
Diff between gap versions 1.14 dated 2026-02-19 and 1.15.1 dated 2026-05-24
gap-1.14/gap/vignettes/nature-genetics.csl |only gap-1.15.1/gap/ChangeLog | 20 gap-1.15.1/gap/DESCRIPTION | 19 gap-1.15.1/gap/MD5 | 135 +++--- gap-1.15.1/gap/NAMESPACE | 24 + gap-1.15.1/gap/R/ACDE.R |only gap-1.15.1/gap/R/AE3.R | 4 gap-1.15.1/gap/R/ESplot.R | 168 +++++--- gap-1.15.1/gap/R/METAL_forestplot.R | 12 gap-1.15.1/gap/R/ccsize.R | 233 +++++------ gap-1.15.1/gap/R/cs.R | 45 +- gap-1.15.1/gap/R/fbsize.R | 16 gap-1.15.1/gap/R/gap.R | 15 gap-1.15.1/gap/R/gcontrol.R | 2 gap-1.15.1/gap/R/hwe.R | 347 ++++++++++------ gap-1.15.1/gap/R/kin.morgan.R | 2 gap-1.15.1/gap/R/metap.R | 262 ++++++++---- gap-1.15.1/gap/R/metareg.R | 283 ++++++------- gap-1.15.1/gap/R/mhtplot.R | 599 +++++++++++++++++++--------- gap-1.15.1/gap/R/mhtplot.trunc.R | 603 ++++++++++++++++++++--------- gap-1.15.1/gap/R/mhtplot2.R | 70 +-- gap-1.15.1/gap/R/mr.R | 296 ++++++++------ gap-1.15.1/gap/R/mr_forestplot.R | 110 +++-- gap-1.15.1/gap/R/mvmeta.R | 346 ++++++++++++---- gap-1.15.1/gap/R/pbsize.R | 10 gap-1.15.1/gap/R/pedtodot_verbatim.R | 13 gap-1.15.1/gap/R/qqfun.R | 115 +++-- gap-1.15.1/gap/R/qqunif.R | 198 ++++++--- gap-1.15.1/gap/R/utils.R | 2 gap-1.15.1/gap/build/partial.rdb |binary gap-1.15.1/gap/build/vignette.rds |binary gap-1.15.1/gap/data/hg18.rda |binary gap-1.15.1/gap/data/hg19.rda |binary gap-1.15.1/gap/data/hg38.rda |binary gap-1.15.1/gap/inst/REFERENCES.bib | 13 gap-1.15.1/gap/inst/doc/gap.R |only gap-1.15.1/gap/inst/doc/gap.Rmd |only gap-1.15.1/gap/inst/doc/gap.html |only gap-1.15.1/gap/inst/doc/gap_incl.html |only gap-1.15.1/gap/inst/doc/shinygap.Rmd | 5 gap-1.15.1/gap/inst/doc/shinygap.html | 7 gap-1.15.1/gap/inst/nature-genetics.csl |only gap-1.15.1/gap/man/ACDE.Rd |only gap-1.15.1/gap/man/AE3.Rd | 4 gap-1.15.1/gap/man/ESplot.Rd | 93 +++- gap-1.15.1/gap/man/METAL_forestplot.Rd | 1 gap-1.15.1/gap/man/ccsize.Rd | 189 ++++----- gap-1.15.1/gap/man/cs.Rd | 35 + gap-1.15.1/gap/man/fbsize.Rd | 12 gap-1.15.1/gap/man/gap.Rd | 1 gap-1.15.1/gap/man/gcontrol.Rd | 3 gap-1.15.1/gap/man/hg18.Rd | 2 gap-1.15.1/gap/man/hg19.Rd | 2 gap-1.15.1/gap/man/hg38.Rd | 2 gap-1.15.1/gap/man/hmht.control.Rd | 39 + gap-1.15.1/gap/man/hwe.Rd | 160 +++++-- gap-1.15.1/gap/man/kin.morgan.Rd | 2 gap-1.15.1/gap/man/metap.Rd | 176 +++++--- gap-1.15.1/gap/man/metareg.Rd | 138 ++++-- gap-1.15.1/gap/man/mht.control.Rd | 57 +- gap-1.15.1/gap/man/mhtplot.Rd | 311 ++++++++++---- gap-1.15.1/gap/man/mhtplot.trunc.Rd | 179 +++++--- gap-1.15.1/gap/man/mhtplot2.Rd | 47 -- gap-1.15.1/gap/man/mr.Rd | 115 +++-- gap-1.15.1/gap/man/mr_forestplot.Rd | 90 +++- gap-1.15.1/gap/man/mvmeta.Rd | 141 ++++-- gap-1.15.1/gap/man/pbsize.Rd | 10 gap-1.15.1/gap/man/pedtodot_verbatim.Rd | 10 gap-1.15.1/gap/man/qqfun.Rd | 13 gap-1.15.1/gap/man/qqunif.Rd | 42 -- gap-1.15.1/gap/src/pfc.sim.f | 6 gap-1.15.1/gap/vignettes/gap.Rmd |only gap-1.15.1/gap/vignettes/shinygap.Rmd | 5 73 files changed, 3723 insertions(+), 2136 deletions(-)
Title: Fragment Analysis in R
Description: Performs fragment analysis using genetic data coming from capillary electrophoresis machines. These are files with FSA extension which stands for FASTA-type file, and .txt files from Beckman CEQ 8000 system, both contain DNA fragment intensities read by machinery. In addition to visualization, it performs automatic scoring of SSRs (Sample Sequence Repeats; a type of genetic marker very common across the genome) and other type of PCR markers (standing for Polymerase Chain Reaction) in biparental populations such as F1, F2, BC (backcross), and diversity panels (collection of genetic diversity).
Author: Giovanny Covarrubias-Pazaran [aut, cre] ,
Luis Diaz-Garcia [aut],
Brandon Schlautman [aut],
Walter Salazar [aut],
Juan Zalapa [aut]
Maintainer: Giovanny Covarrubias-Pazaran <cova_ruber@live.com.mx>
Diff between Fragman versions 1.0.9 dated 2018-01-14 and 1.1.0 dated 2026-05-24
Fragman-1.0.9/Fragman/data/datalist |only Fragman-1.1.0/Fragman/DESCRIPTION | 32 ++++++++++++++++-------- Fragman-1.1.0/Fragman/MD5 | 19 +++++++------- Fragman-1.1.0/Fragman/R/find.ladder.R | 2 - Fragman-1.1.0/Fragman/R/ladder.info.attach.R | 36 ++++----------------------- Fragman-1.1.0/Fragman/R/read.abif.R | 1 Fragman-1.1.0/Fragman/R/storing.inds.R | 5 ++- Fragman-1.1.0/Fragman/R/utils.R |only Fragman-1.1.0/Fragman/README.md |only Fragman-1.1.0/Fragman/data/my.plants.RData |binary Fragman-1.1.0/Fragman/inst/CITATION | 22 ++++++++++------ Fragman-1.1.0/Fragman/man/read.abif.Rd | 1 12 files changed, 57 insertions(+), 61 deletions(-)
Title: Convenient Functions for Exploratory Data Analysis
Description: A collection of convenient functions to facilitate common tasks in exploratory data analysis.
Some common tasks include generating summary tables of variables,
displaying tables as a 'flextable' or a 'kable' and visualising variables using 'ggplot2'.
Labels stating the source file with run time can be easily generated
for annotation in tables and plots.
Author: Tomas Sou [aut, cre]
Maintainer: Tomas Sou <tomas.sou@carexer.com>
Diff between edar versions 0.0.6 dated 2025-11-25 and 0.0.7 dated 2026-05-24
DESCRIPTION | 13 +-- MD5 | 55 ++++++++------ NAMESPACE | 5 + NEWS.md | 24 ++++++ R/func_all.R | 120 ++++++++++++++++++++++++++++--- R/func_gg.R | 53 ++++++++++--- README.md | 51 +++++-------- man/edar-package.Rd | 1 man/figures/README-unnamed-chunk-3-1.png |binary man/figures/README-unnamed-chunk-4-1.png |binary man/figures/README-unnamed-chunk-4-2.png |binary man/figures/README-unnamed-chunk-4-3.png |binary man/figures/README-unnamed-chunk-4-4.png |binary man/figures/README-unnamed-chunk-4-5.png |only man/figures/README-unnamed-chunk-5-1.png |binary man/figures/README-unnamed-chunk-5-2.png |binary man/figures/README-unnamed-chunk-5-3.png |binary man/figures/README-unnamed-chunk-5-4.png |binary man/figures/README-unnamed-chunk-5-5.png |only man/figures/README-unnamed-chunk-5-6.png |only man/figures/README-unnamed-chunk-6-1.png |only man/figures/README-unnamed-chunk-6-2.png |only man/figures/README-unnamed-chunk-6-3.png |only man/figures/README-unnamed-chunk-6-4.png |only man/figures/README-unnamed-chunk-6-5.png |only man/geo_cv.Rd |only man/geo_mean.Rd |only man/geo_sd.Rd |only man/ggout.Rd |only man/ggsrc.Rd | 3 man/ggxy.Rd | 14 +-- man/label_src.Rd | 2 man/summ_by.Rd | 15 +++ man/summ_cat.Rd | 6 + man/tab2v.Rd |only 35 files changed, 270 insertions(+), 92 deletions(-)
Title: Nonparametric Bounds for the Average Causal Effect Due to Balke
and Pearl and Extensions
Description: Implementation of the nonparametric bounds for the average
causal effect under an instrumental variable model by Balke and Pearl
(Bounds on Treatment Effects from Studies with Imperfect Compliance,
JASA, 1997, 92, 439, 1171-1176, <doi:10.1080/01621459.1997.10474074>). The package
can calculate bounds for a binary outcome, a binary
treatment/phenotype, and an instrument with either 2 or 3 categories.
The package implements bounds for situations where these 3 variables
are measured in the same dataset (trivariate data) or where the
outcome and instrument are measured in one study and the
treatment/phenotype and instrument are measured in another study
(bivariate data).
Author: Tom Palmer [aut, cre] ,
Roland Ramsahai [aut] ,
Vanessa Didelez [aut] ,
Nuala Sheehan [aut]
Maintainer: Tom Palmer <remlapmot@hotmail.com>
Diff between bpbounds versions 0.1.6 dated 2024-06-13 and 0.1.7 dated 2026-05-24
bpbounds-0.1.6/bpbounds/R/bpbounds-package.r |only bpbounds-0.1.7/bpbounds/DESCRIPTION | 26 bpbounds-0.1.7/bpbounds/MD5 | 34 - bpbounds-0.1.7/bpbounds/NEWS.md | 8 bpbounds-0.1.7/bpbounds/R/bpbounds-package.R |only bpbounds-0.1.7/bpbounds/R/bpbounds.R | 32 - bpbounds-0.1.7/bpbounds/R/bpbounds_calc_tri_z3.R | 13 bpbounds-0.1.7/bpbounds/R/bpbounds_tri_x2y2z2.R | 3 bpbounds-0.1.7/bpbounds/README.md | 2 bpbounds-0.1.7/bpbounds/build/partial.rdb |binary bpbounds-0.1.7/bpbounds/build/vignette.rds |binary bpbounds-0.1.7/bpbounds/inst/doc/bpbounds.R | 37 - bpbounds-0.1.7/bpbounds/inst/doc/bpbounds.Rmd | 66 +- bpbounds-0.1.7/bpbounds/inst/doc/bpbounds.html | 450 ++++++++--------- bpbounds-0.1.7/bpbounds/man/bpbounds-package.Rd | 6 bpbounds-0.1.7/bpbounds/man/bpbounds.Rd | 10 bpbounds-0.1.7/bpbounds/tests/testthat/test-bpbounds.R | 154 +++-- bpbounds-0.1.7/bpbounds/vignettes/bibliography.bib | 5 bpbounds-0.1.7/bpbounds/vignettes/bpbounds.Rmd | 66 +- 19 files changed, 476 insertions(+), 436 deletions(-)
Title: Fast Iterative Filtering (FIF) with Portable FFT Backend
Description: Provides an R interface to a C implementation of Fast Iterative Filtering (FIF)
for decomposing a univariate signal into intrinsic mode functions (IMFs) and a residual.
The package uses Fast Fourier Transform library FFTW, if found. If not, it provides
instructions to install it for your OS. This is recommended, as R's internal fft(), while
avoiding external FFT dependencies, is two orders of magnitude slower. See vignette
'Installing FFTW for RFIF' for RFIF installation instructions.
Author: Chuck Coleman [aut, cre]
Maintainer: Chuck Coleman <cdcoleman113@gmail.com>
This is a re-admission after prior archival of version 1.0.1 dated 2026-04-10
Diff between RFIF versions 1.0.1 dated 2026-04-10 and 1.0.2 dated 2026-05-24
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ NEWS.md | 4 ++++ build/vignette.rds |binary inst/doc/install-fftw3l.html | 4 ++-- src/FFT.h | 8 -------- src/Fif.c | 15 ++++++--------- 7 files changed, 21 insertions(+), 28 deletions(-)
Title: Scraper for National Hockey League Data
Description: Scrapes and cleans data from the 'NHL' and 'ESPN' APIs into data.frames and lists. Wraps 125+ endpoints documented in <https://github.com/RentoSaijo/nhlscraper/wiki> from high-level multi-season summaries and award winners to low-level decisecond replays and bookmakers' odds, making them more accessible. Features cleaning and visualization tools, primarily for play-by-plays.
Author: Rento Saijo [aut, cre, cph] ,
Lars Skytte [ctb],
Jack Pallotta [ctb]
Maintainer: Rento Saijo <rentosaijo0527@gmail.com>
Diff between nhlscraper versions 0.6.0 dated 2026-04-07 and 0.6.1 dated 2026-05-24
nhlscraper-0.6.0/nhlscraper/man/dot-html_on_ice_can_override_strength_context.Rd |only nhlscraper-0.6.0/nhlscraper/man/dot-html_on_ice_matches_event_actors.Rd |only nhlscraper-0.6.0/nhlscraper/man/dot-html_on_ice_matches_late_empty_net.Rd |only nhlscraper-0.6.0/nhlscraper/man/dot-html_on_ice_matches_reconstructed_strength.Rd |only nhlscraper-0.6.0/nhlscraper/man/dot-html_on_ice_matches_situation_code.Rd |only nhlscraper-0.6.0/nhlscraper/man/dot-override_strength_context_from_html.Rd |only nhlscraper-0.6.0/nhlscraper/man/dot-reconstruct_skater_counts_from_penalties.Rd |only nhlscraper-0.6.1/nhlscraper/DESCRIPTION | 6 nhlscraper-0.6.1/nhlscraper/MD5 | 43 nhlscraper-0.6.1/nhlscraper/NAMESPACE | 2 nhlscraper-0.6.1/nhlscraper/NEWS.md | 6 nhlscraper-0.6.1/nhlscraper/R/Clean.R | 16 nhlscraper-0.6.1/nhlscraper/R/Game.R | 1018 +++------- nhlscraper-0.6.1/nhlscraper/R/Load.R | 32 nhlscraper-0.6.1/nhlscraper/R/Skater.R | 13 nhlscraper-0.6.1/nhlscraper/README.md | 2 nhlscraper-0.6.1/nhlscraper/inst/doc/back-to-back-tax.html | 92 nhlscraper-0.6.1/nhlscraper/inst/doc/play-by-play-pipeline.Rmd | 34 nhlscraper-0.6.1/nhlscraper/inst/doc/play-by-play-pipeline.html | 89 nhlscraper-0.6.1/nhlscraper/inst/doc/playoff-size.html | 200 - nhlscraper-0.6.1/nhlscraper/man/shift_chart_summaries.Rd |only nhlscraper-0.6.1/nhlscraper/man/shift_chart_summary.Rd |only nhlscraper-0.6.1/nhlscraper/src/on_ice_shift_timings.c | 6 nhlscraper-0.6.1/nhlscraper/tests/testthat/test-html_on_ice_pbp.R | 161 + nhlscraper-0.6.1/nhlscraper/tests/testthat/test-load_shift_chart_summaries.R |only nhlscraper-0.6.1/nhlscraper/tests/testthat/test-on_ice_shift_timings.R |only nhlscraper-0.6.1/nhlscraper/tests/testthat/test-shift_chart.R | 84 nhlscraper-0.6.1/nhlscraper/vignettes/play-by-play-pipeline.Rmd | 34 28 files changed, 842 insertions(+), 996 deletions(-)
Title: Geolocalização De Endereços Brasileiros (Geocoding Brazilian
Addresses)
Description: Método simples e eficiente de geolocalizar dados no Brasil. O
pacote é baseado em conjuntos de dados espaciais abertos de endereços
brasileiros, utilizando como fonte principal o Cadastro Nacional de Endereços
para Fins Estatísticos (CNEFE). O CNEFE é publicado pelo Instituto Brasileiro
de Geografia e Estatística (IBGE), órgão oficial de estatísticas e geografia
do Brasil. (A simple and efficient method for geolocating data in Brazil. The
package is based on open spatial datasets of Brazilian addresses, primarily
using the Cadastro Nacional de Endereços para Fins Estatísticos (CNEFE),
published by the Instituto Brasileiro de Geografia e Estatística (IBGE),
Brazil's official statistics and geography agency.)
Author: Rafael H. M. Pereira [aut, cre] ,
Daniel Herszenhut [aut] ,
Gabriel Garcia de Almeida [aut] ,
Arthur Bazolli [ctb],
Pedro Milreu Cunha [ctb],
ITpS - Instituto Todos pela Saude [fnd],
Ipea - Instituto de Pesquisa Economica Aplicada [cph, fnd]
Maintainer: Rafael H. M. Pereira <rafa.pereira.br@gmail.com>
Diff between geocodebr versions 0.6.2 dated 2026-04-13 and 0.6.3 dated 2026-05-24
geocodebr-0.6.2/geocodebr/R/onLoad.R |only geocodebr-0.6.3/geocodebr/DESCRIPTION | 18 geocodebr-0.6.3/geocodebr/MD5 | 55 - geocodebr-0.6.3/geocodebr/NEWS.md | 67 + geocodebr-0.6.3/geocodebr/R/geocode.R | 49 + geocodebr-0.6.3/geocodebr/R/geocode_reverso.R | 65 - geocodebr-0.6.3/geocodebr/README.md | 10 geocodebr-0.6.3/geocodebr/inst/doc/geocode.Rmd | 2 geocodebr-0.6.3/geocodebr/inst/doc/geocode.html | 6 geocodebr-0.6.3/geocodebr/inst/doc/geocode_reverso.Rmd | 2 geocodebr-0.6.3/geocodebr/inst/doc/geocode_reverso.html | 10 geocodebr-0.6.3/geocodebr/inst/doc/geocodebr.R | 2 geocodebr-0.6.3/geocodebr/inst/doc/geocodebr.Rmd | 6 geocodebr-0.6.3/geocodebr/inst/doc/geocodebr.html | 28 geocodebr-0.6.3/geocodebr/inst/extdata/large_sample.parquet |binary geocodebr-0.6.3/geocodebr/inst/extdata/munis_bbox_2022.parquet |binary geocodebr-0.6.3/geocodebr/man/definir_pasta_cache.Rd | 2 geocodebr-0.6.3/geocodebr/man/geocodebr.Rd | 9 geocodebr-0.6.3/geocodebr/tests/tests_rafa/benchmark_20k.R | 13 geocodebr-0.6.3/geocodebr/tests/tests_rafa/generate_sample_data.R | 3 geocodebr-0.6.3/geocodebr/tests/tests_rafa/munis_bbox.R | 86 +- geocodebr-0.6.3/geocodebr/tests/tests_rafa/reverse_geocode_tests.R | 348 ---------- geocodebr-0.6.3/geocodebr/tests/testthat/_snaps/cache.md | 60 - geocodebr-0.6.3/geocodebr/tests/testthat/_snaps/definir_campos.md | 16 geocodebr-0.6.3/geocodebr/tests/testthat/_snaps/message.md | 14 geocodebr-0.6.3/geocodebr/tests/testthat/test-geocode.R | 66 + geocodebr-0.6.3/geocodebr/vignettes/geocode.Rmd | 2 geocodebr-0.6.3/geocodebr/vignettes/geocode_reverso.Rmd | 2 geocodebr-0.6.3/geocodebr/vignettes/geocodebr.Rmd | 6 29 files changed, 372 insertions(+), 575 deletions(-)
Title: Understand and Describe Bayesian Models and Posterior
Distributions
Description: Provides utilities to describe posterior
distributions and Bayesian models. It includes point-estimates such as
Maximum A Posteriori (MAP), measures of dispersion (Highest Density
Interval - HDI; Kruschke, 2015 <doi:10.1016/C2012-0-00477-2>) and
indices used for null-hypothesis testing (such as ROPE percentage, pd
and Bayes factors). References: Makowski et al. (2021) <doi:10.21105/joss.01541>.
Author: Dominique Makowski [aut, cre] ,
Daniel Luedecke [aut] ,
Mattan S. Ben-Shachar [aut] ,
Indrajeet Patil [aut] ,
Micah K. Wilson [aut] ,
Brenton M. Wiernik [aut] ,
Paul-Christian Buerkner [rev],
Tristan Mahr [rev] ,
Henrik Singmann [ctb] ,
Quentin F. Gron [...truncated...]
Maintainer: Dominique Makowski <officialeasystats@gmail.com>
Diff between bayestestR versions 0.18.0 dated 2026-05-21 and 0.18.1 dated 2026-05-24
DESCRIPTION | 6 MD5 | 18 NEWS.md | 14 R/describe_posterior.R | 642 ++++++++++++++++------------- R/diagnostic_posterior.R | 18 R/mcse.R | 25 + man/contr.equalprior.Rd | 2 man/diagnostic_posterior.Rd | 6 man/mcse.Rd | 16 tests/testthat/test-diagnostic_posterior.R | 10 10 files changed, 453 insertions(+), 304 deletions(-)
Title: Collection of Utility Functions for Data Analysis and Computing
Description: Provides utility functions for data analysis and computing. Includes functions for logging, parallel processing, and other computational tasks to streamline workflows.
Author: Meng Xu [aut, cre] ,
Haoliang Zhu [aut]
Maintainer: Meng Xu <mengxu98@qq.com>
Diff between thisutils versions 0.4.5 dated 2026-04-24 and 0.4.7 dated 2026-05-24
thisutils-0.4.5/thisutils/man/compute_simpson_index.Rd |only thisutils-0.4.7/thisutils/DESCRIPTION | 18 thisutils-0.4.7/thisutils/MD5 | 19 thisutils-0.4.7/thisutils/NAMESPACE | 1 thisutils-0.4.7/thisutils/NEWS.md | 7 thisutils-0.4.7/thisutils/R/RcppExports.R | 8 thisutils-0.4.7/thisutils/R/lisi.R | 271 ----- thisutils-0.4.7/thisutils/man/compute_lisi.Rd | 21 thisutils-0.4.7/thisutils/src/RcppExports.cpp | 25 thisutils-0.4.7/thisutils/src/lisi.cpp | 894 ++++++++++++++--- thisutils-0.4.7/thisutils/tests/testthat/test-lisi.R | 232 +--- 11 files changed, 904 insertions(+), 592 deletions(-)
Title: Model Visualisation Toolbox for 'easystats' and 'ggplot2'
Description: Provides plotting utilities supporting packages in the 'easystats'
ecosystem (<https://github.com/easystats/easystats>) and some extra themes,
geoms, and scales for 'ggplot2'. Color scales are based on
<https://materialui.co/>.
References: Lüdecke et al. (2021) <doi:10.21105/joss.03393>.
Author: Daniel Luedecke [aut, cre] ,
Dominique Makowski [aut, inv] ,
Indrajeet Patil [aut] ,
Mattan S. Ben-Shachar [aut, ctb] ,
Brenton M. Wiernik [aut, ctb] ,
Remi Theriault [aut, ctb] ,
Philip Waggoner [aut, ctb] ,
Jeffrey R. Stevens [ctb] ,
Matthew Smith [ [...truncated...]
Maintainer: Daniel Luedecke <officialeasystats@gmail.com>
Diff between see versions 0.13.0 dated 2026-01-30 and 0.14.0 dated 2026-05-24
DESCRIPTION | 16 MD5 | 51 +-- NAMESPACE | 4 NEWS.md | 22 + R/geom_point2.R | 98 ++++- R/plot.check_dag.R | 2 R/plot.check_model.R | 425 ++++++++++--------------- R/plot.check_normality.R | 24 - R/plot.check_outliers.dots.R | 25 - R/plot.check_predictions.R | 179 ++++++---- R/plot.compare_parameters.R | 81 +--- R/plot.dw_data_tabulate.R | 32 - R/plot.estimate_contrasts.R | 20 - R/plot.p_direction.R | 169 +++++---- R/plot.parameters_pca.R | 76 ++++ R/plot.parameters_pca_graph.R |only R/print.check_model.R | 1 R/utils.R | 6 build/partial.rdb |binary man/geom_point2.Rd | 45 +- man/ggplot2-ggproto.Rd | 1 man/plot.see_parameters_pca.Rd | 49 ++ man/scale_color_okabeito.Rd | 4 man/see-package.Rd | 1 tests/testthat/test-discovr_book.R |only tests/testthat/test-vdiffr_check_model.R | 39 ++ tests/testthat/test-vdiffr_check_predictions.R |only tests/testthat/test-vdiffr_factor_analysis.R |only tests/testthat/test-vdiffr_geoms_borderless.R |only 29 files changed, 810 insertions(+), 560 deletions(-)
Title: The ScottKnott Clustering Algorithm
Description: Performs the Scott & Knott (1974) clustering algorithm as a
multiple comparison method in the Analysis of Variance context, for
both balanced and unbalanced <doi:10.1590/1984-70332017v17n1a1>
designs. Accepts input from 'formula', 'aov', 'lm', 'aovlist', and 'lmerMod'
objects.
Author: J. C. Faria [aut],
E. G. Jelihovschi [aut],
I. B. Allaman [aut, cre]
Maintainer: I. B. Allaman <ivanalaman@gmail.com>
Diff between ScottKnott versions 1.3-3 dated 2025-03-15 and 1.4-0 dated 2026-05-24
ScottKnott-1.3-3/ScottKnott/ChangeLog |only ScottKnott-1.3-3/ScottKnott/man/LS.Rd |only ScottKnott-1.4-0/ScottKnott/DESCRIPTION | 54 +- ScottKnott-1.4-0/ScottKnott/MD5 | 104 ++- ScottKnott-1.4-0/ScottKnott/NAMESPACE | 67 +- ScottKnott-1.4-0/ScottKnott/NEWS.md |only ScottKnott-1.4-0/ScottKnott/R/MaxValue.R | 361 ++++++------- ScottKnott-1.4-0/ScottKnott/R/SK.aovlist.R | 478 ++++++++---------- ScottKnott-1.4-0/ScottKnott/R/SK.default.R | 8 ScottKnott-1.4-0/ScottKnott/R/SK.formula.R | 130 ++-- ScottKnott-1.4-0/ScottKnott/R/SK.lm.R | 367 ++++++------- ScottKnott-1.4-0/ScottKnott/R/SK.lmerMod.R | 388 +++++++------- ScottKnott-1.4-0/ScottKnott/R/SK.nest.aovlist.R | 285 +++++----- ScottKnott-1.4-0/ScottKnott/R/SK.nest.lm.R | 288 +++++----- ScottKnott-1.4-0/ScottKnott/R/SK.nest.lmerMod.R | 289 +++++----- ScottKnott-1.4-0/ScottKnott/R/boxplot.SK.R | 361 ++++++------- ScottKnott-1.4-0/ScottKnott/R/m.infos.lm.R | 14 ScottKnott-1.4-0/ScottKnott/R/m.infos.lmerMod.R | 69 +- ScottKnott-1.4-0/ScottKnott/R/m.infos.nest.lm.R | 14 ScottKnott-1.4-0/ScottKnott/R/m.infos.nest.lmerMod.R | 117 ++-- ScottKnott-1.4-0/ScottKnott/R/plot.SK.R | 182 ++---- ScottKnott-1.4-0/ScottKnott/R/print.SK.R | 22 ScottKnott-1.4-0/ScottKnott/R/summary.SK.R | 31 - ScottKnott-1.4-0/ScottKnott/R/xtable.SK.R | 51 + ScottKnott-1.4-0/ScottKnott/README.md | 121 +++- ScottKnott-1.4-0/ScottKnott/build |only ScottKnott-1.4-0/ScottKnott/demo/00Index | 14 ScottKnott-1.4-0/ScottKnott/demo/CRD.R | 139 +++-- ScottKnott-1.4-0/ScottKnott/demo/FE.R | 66 +- ScottKnott-1.4-0/ScottKnott/demo/LSD.R | 49 + ScottKnott-1.4-0/ScottKnott/demo/RCBD.R | 61 +- ScottKnott-1.4-0/ScottKnott/demo/SPE.R | 86 +-- ScottKnott-1.4-0/ScottKnott/demo/SPET.R | 97 +-- ScottKnott-1.4-0/ScottKnott/demo/SSPE.R | 90 +-- ScottKnott-1.4-0/ScottKnott/inst/CITATION | 46 - ScottKnott-1.4-0/ScottKnott/inst/doc |only ScottKnott-1.4-0/ScottKnott/man/CRD1.Rd | 4 ScottKnott-1.4-0/ScottKnott/man/CRD2.Rd | 4 ScottKnott-1.4-0/ScottKnott/man/FE.Rd | 6 ScottKnott-1.4-0/ScottKnott/man/LSD.Rd |only ScottKnott-1.4-0/ScottKnott/man/RCBD.Rd | 6 ScottKnott-1.4-0/ScottKnott/man/SK.Rd | 128 ++-- ScottKnott-1.4-0/ScottKnott/man/SPE.Rd | 10 ScottKnott-1.4-0/ScottKnott/man/SSPE.Rd | 12 ScottKnott-1.4-0/ScottKnott/man/ScottKnott-package.Rd | 206 +++---- ScottKnott-1.4-0/ScottKnott/man/boxplot.SK.Rd | 203 +++---- ScottKnott-1.4-0/ScottKnott/man/plot.SK.Rd | 57 +- ScottKnott-1.4-0/ScottKnott/man/print.SK.Rd | 12 ScottKnott-1.4-0/ScottKnott/man/sorghum.Rd | 26 ScottKnott-1.4-0/ScottKnott/man/summary.Rd | 11 ScottKnott-1.4-0/ScottKnott/man/xtable.Rd |only ScottKnott-1.4-0/ScottKnott/man/xtable.SK.Rd | 35 - ScottKnott-1.4-0/ScottKnott/tests |only ScottKnott-1.4-0/ScottKnott/vignettes |only 54 files changed, 2693 insertions(+), 2476 deletions(-)
Title: Processing of Model Parameters
Description: Utilities for processing the parameters of various
statistical models. Beyond computing p values, CIs, and other indices
for a wide variety of models (see list of supported models using the
function 'insight::supported_models()'), this package implements
features like bootstrapping or simulating of parameters and models,
feature reduction (feature extraction and variable selection) as well
as functions to describe data and variable characteristics (e.g.
skewness, kurtosis, smoothness or distribution).
Author: Daniel Luedecke [aut, cre] ,
Dominique Makowski [aut] ,
Mattan S. Ben-Shachar [aut] ,
Indrajeet Patil [aut] ,
Soeren Hoejsgaard [aut],
Brenton M. Wiernik [aut] ,
Zen J. Lau [ctb],
Vincent Arel-Bundock [ctb] ,
Jeffrey Girard [ctb] ,
Christina Maimone [re [...truncated...]
Maintainer: Daniel Luedecke <officialeasystats@gmail.com>
Diff between parameters versions 0.29.0 dated 2026-05-09 and 0.29.1 dated 2026-05-24
DESCRIPTION | 10 MD5 | 65 +- NEWS.md | 19 R/1_model_parameters.R | 14 R/3_p_value.R | 41 - R/4_standard_error.R | 6 R/bootstrap_model.R | 68 +- R/bootstrap_parameters.R | 49 + R/format.R | 747 ++++++++++--------------- R/methods_aod.R | 44 - R/methods_brms.R | 105 ++- R/methods_htest.R | 122 ++-- R/methods_nestedLogit.R | 155 ++--- R/methods_plm.R | 63 +- R/utils_model_parameters.R | 160 ++--- man/bootstrap_model.Rd | 2 man/model_parameters.compare.loo.Rd | 2 man/model_parameters.default.Rd | 11 man/model_parameters.glimML.Rd | 4 man/p_function.Rd | 2 man/parameters-package.Rd | 1 man/principal_components.Rd | 4 man/reexports.Rd | 6 man/standardize_info.Rd | 4 man/standardize_parameters.Rd | 4 tests/testthat/test-brms.R | 32 + tests/testthat/test-coxph.R | 1 tests/testthat/test-discovr_book.R |only tests/testthat/test-factor_analysis.R | 33 - tests/testthat/test-glmer.R | 29 tests/testthat/test-glmmTMB.R | 19 tests/testthat/test-model_parameters.mixed.R | 104 ++- tests/testthat/test-random_effects_covstruct.R | 5 tests/testthat/test-serp.R | 8 34 files changed, 1045 insertions(+), 894 deletions(-)
Title: Conventional Tukey Test
Description: Performs multiple comparison analyses using Tukey's
Honestly Significant Difference (HSD) test, with intuitive letter
grouping of means for balanced and unbalanced designs. Accepts
input from 'formula', 'aov', 'lm', 'aovlist', and 'lmerMod' objects,
including straightforward handling of interactions. For more
details see Tukey (1949) <doi:10.2307/3001913>.
Author: J. C. Faria [aut],
E. G. Jelihovschi [aut],
I. B. Allaman [aut, cre]
Maintainer: I. B. Allaman <ivanalaman@gmail.com>
Diff between TukeyC versions 1.3-44 dated 2026-02-25 and 1.4-0 dated 2026-05-24
TukeyC-1.3-44/TukeyC/ChangeLog |only TukeyC-1.4-0/TukeyC/DESCRIPTION | 58 ++- TukeyC-1.4-0/TukeyC/MD5 | 111 ++++--- TukeyC-1.4-0/TukeyC/NAMESPACE | 2 TukeyC-1.4-0/TukeyC/NEWS.md |only TukeyC-1.4-0/TukeyC/R/TukeyC.R | 2 TukeyC-1.4-0/TukeyC/R/TukeyC.aovlist.R | 297 ++++++++++-------- TukeyC-1.4-0/TukeyC/R/TukeyC.default.R | 13 TukeyC-1.4-0/TukeyC/R/TukeyC.formula.R | 129 ++++---- TukeyC-1.4-0/TukeyC/R/TukeyC.lm.R | 317 ++++++++++---------- TukeyC-1.4-0/TukeyC/R/TukeyC.lmerMod.R | 329 +++++++++++--------- TukeyC-1.4-0/TukeyC/R/TukeyC.nest.aovlist.R | 143 ++++----- TukeyC-1.4-0/TukeyC/R/TukeyC.nest.lm.R | 156 +++++---- TukeyC-1.4-0/TukeyC/R/TukeyC.nest.lmerMod.R | 156 +++++---- TukeyC-1.4-0/TukeyC/R/boxplot.TukeyC.R | 408 ++++++++++++++------------ TukeyC-1.4-0/TukeyC/R/cv.R | 71 ++-- TukeyC-1.4-0/TukeyC/R/m.infos.aovlist.R | 57 ++- TukeyC-1.4-0/TukeyC/R/m.infos.lm.R | 63 ++-- TukeyC-1.4-0/TukeyC/R/m.infos.lmerMod.R | 66 ++-- TukeyC-1.4-0/TukeyC/R/m.infos.nest.aovlist.R | 100 +++--- TukeyC-1.4-0/TukeyC/R/m.infos.nest.lm.R | 94 +++-- TukeyC-1.4-0/TukeyC/R/m.infos.nest.lmerMod.R | 106 +++--- TukeyC-1.4-0/TukeyC/R/make.TukeyC.groups.R | 169 ++++++---- TukeyC-1.4-0/TukeyC/R/make.TukeyC.test.R | 160 +++++----- TukeyC-1.4-0/TukeyC/R/plot.TukeyC.R | 372 +++++++++++++---------- TukeyC-1.4-0/TukeyC/R/print.TukeyC.R | 36 +- TukeyC-1.4-0/TukeyC/R/summary.TukeyC.R | 31 + TukeyC-1.4-0/TukeyC/R/tukeyc-utils.R |only TukeyC-1.4-0/TukeyC/R/xtable.TukeyC.R | 63 +++- TukeyC-1.4-0/TukeyC/README.md | 106 +++++- TukeyC-1.4-0/TukeyC/build |only TukeyC-1.4-0/TukeyC/demo/CRD.R | 18 - TukeyC-1.4-0/TukeyC/demo/RCBD.R | 4 TukeyC-1.4-0/TukeyC/demo/SPE.R | 8 TukeyC-1.4-0/TukeyC/demo/SPET.R | 16 - TukeyC-1.4-0/TukeyC/demo/SSPE.R | 18 - TukeyC-1.4-0/TukeyC/inst/doc |only TukeyC-1.4-0/TukeyC/man/CRD2.Rd | 2 TukeyC-1.4-0/TukeyC/man/FE.Rd | 2 TukeyC-1.4-0/TukeyC/man/LS.Rd | 4 TukeyC-1.4-0/TukeyC/man/RCBD.Rd | 4 TukeyC-1.4-0/TukeyC/man/SPE.Rd | 2 TukeyC-1.4-0/TukeyC/man/SSPE.Rd | 2 TukeyC-1.4-0/TukeyC/man/TukeyC-package.Rd | 26 - TukeyC-1.4-0/TukeyC/man/TukeyC.Rd | 45 +- TukeyC-1.4-0/TukeyC/man/boxplot.TukeyC.Rd | 14 TukeyC-1.4-0/TukeyC/man/cv.Rd | 12 TukeyC-1.4-0/TukeyC/man/make.TukeyC.groups.Rd | 37 +- TukeyC-1.4-0/TukeyC/man/make.TukeyC.test.Rd | 55 +-- TukeyC-1.4-0/TukeyC/man/plot.TukeyC.Rd | 24 - TukeyC-1.4-0/TukeyC/man/print.TukeyC.Rd | 12 TukeyC-1.4-0/TukeyC/man/summary.Rd | 16 - TukeyC-1.4-0/TukeyC/man/xtable.Rd |only TukeyC-1.4-0/TukeyC/man/xtable.TukeyC.Rd | 49 +-- TukeyC-1.4-0/TukeyC/tests |only TukeyC-1.4-0/TukeyC/vignettes |only 56 files changed, 2222 insertions(+), 1763 deletions(-)
Title: Aggregate Matrix Population Models
Description: Aggregates matrix population models (MPMs) in both the lambda (stable
growth rate) and R0 (net reproductive rate) frameworks, including standard and
elasticity-consistent aggregators. Standard aggregation in the lambda framework
maintains consistent lambda and stable stage distribution, while standard aggregation
in the R0 framework maintains consistent R0 and cohort stable stage distribution.
Elasticity-consistent aggregators maintain these same consistencies with respect
to the chosen framework and additionally preserve consistent reproductive values in
the lambda framework and cohort reproductive values in the R0 framework. Aggregation
can take the form of general-to-general MPM (mpm_aggregate) or Leslie-to-Leslie
MPM (leslie_aggregate).
Author: Richard A. Hinrichsen [aut, cre] ,
Roberto Salguero-Gomez [aut] ,
Hiroyuki Yokomizo [aut]
Maintainer: Richard A. Hinrichsen <r.hinrichsen.ecology@gmail.com>
Diff between mpmaggregate versions 0.2.5 dated 2026-04-03 and 0.2.6 dated 2026-05-24
DESCRIPTION | 10 +++++----- MD5 | 14 +++++++------- NEWS.md | 8 ++++++++ README.md | 14 ++++++++++---- build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 7 ++++--- man/mpmaggregate-package.Rd | 1 + 8 files changed, 35 insertions(+), 19 deletions(-)
Title: Likelihood-Based Statistical Inference in the Fisherian
Tradition
Description: Facilitates building likelihood models in the Fisherian tradition
following Richard Royall (1997, ISBN:978-0412044113) "Statistical Evidence: A
Likelihood Paradigm". Defines generic methods for working with likelihoods
(loglik(), score(), hess_loglik(), fim()) and provides functions for pure
likelihood-based inference (support(), relative_likelihood(),
likelihood_interval(), profile_loglik()).
Author: Alexander Towell [aut, cre]
Maintainer: Alexander Towell <lex@metafunctor.com>
Diff between likelihood.model versions 1.0.0 dated 2026-03-19 and 1.0.1 dated 2026-05-24
DESCRIPTION | 6 +- MD5 | 14 +++--- NEWS.md | 27 ++++++++++++ R/core-generics.R | 19 +++++++-- inst/doc/exponential-lifetime.html | 2 inst/doc/getting-started.html | 2 man/fim.likelihood_model.Rd | 17 +++++++- tests/test.R | 77 ++++++++++++++++++++++++++++++++++--- 8 files changed, 142 insertions(+), 22 deletions(-)
More information about likelihood.model at CRAN
Permanent link
Title: Health Geography Toolbox for Model-Based Analysis of Infections
Panel Data
Description: Within epidemic outbreaks, infections grow and decline differently between regions, and the velocity of spatial spread differs between countries. The swash library offers a set of model-based analyses for these topics. Spread velocity may be analysed with the Swash-Backwash Model for the Single Epidemic Wave and corresponding functions for bootstrap confidence intervals, country comparison, and visualization of results. Differences in epidemic growth between regions may be analysed using logistic growth models, exponential growth models, Hawkes processes and breakpoint analyses. All functionalities are accessed by the class "infpan" for infections panel data defined in this package, which is built from a data.frame provided by the user.
Author: Thomas Wieland [aut, cre]
Maintainer: Thomas Wieland <geowieland@googlemail.com>
Diff between swash versions 2.0.0 dated 2026-04-06 and 2.0.1 dated 2026-05-24
DESCRIPTION | 8 ++-- MD5 | 74 +++++++++++++++++++------------------- NEWS.md | 19 +-------- build/partial.rdb |binary data/C19dNUTSdata.rda |binary data/COVID19Cases_geoRegion.rda |binary data/Infections.rda |binary data/Oesterreich_Faelle.rda |binary data/RKI_Corona_counties.rda |binary data/did_fatalities_splm_coef.rda |binary man/COVID19Cases_geoRegion.Rd | 13 +++++- man/Oesterreich_Faelle.Rd | 14 ++++++- man/as_balanced.Rd | 8 +++- man/binary_metrics.Rd | 2 - man/binary_metrics_glm.Rd | 4 +- man/breaks_growth.Rd | 8 ++-- man/calculate_Rt.Rd | 6 +++ man/calculate_cum-method.Rd | 3 + man/calculate_rollsum-method.Rd | 2 - man/compare_countries.Rd | 14 ++++++- man/countries-class.Rd | 5 +- man/did_fatalities_splm_coef.Rd | 19 +++++++++ man/expgrowth-class.Rd | 2 - man/exponential_growth.Rd | 4 +- man/growth.Rd | 2 - man/growth_breaks.Rd | 2 - man/growthmodels-class.Rd | 6 +-- man/hawkes-class.Rd | 6 +-- man/hawkes_growth.Rd | 2 - man/infpan-class.Rd | 2 + man/load_infections_paneldata.Rd | 2 - man/logistic_growth.Rd | 2 - man/metrics.Rd | 2 - man/nbmatrix.Rd | 2 - man/plot-methods.Rd | 10 +++-- man/print-methods.Rd | 10 ++--- man/sbm-class.Rd | 4 -- man/swash-package.Rd | 26 ++++++++----- 38 files changed, 170 insertions(+), 113 deletions(-)
Title: Exploratory Data Analysis for the 'spatstat' Family
Description: Functionality for exploratory data analysis and nonparametric analysis of
spatial data, mainly spatial point patterns,
in the 'spatstat' family of packages.
(Excludes analysis of spatial data on a linear network,
which is covered by the separate package 'spatstat.linnet'.)
Methods include quadrat counts, K-functions and their simulation envelopes, nearest neighbour distance and empty space statistics, Fry plots, pair correlation function, kernel smoothed intensity, relative risk estimation with cross-validated bandwidth selection, mark correlation functions, segregation indices, mark dependence diagnostics, and kernel estimates of covariate effects. Formal hypothesis tests of random pattern (chi-squared, Kolmogorov-Smirnov, Monte Carlo, Diggle-Cressie-Loosmore-Ford, Dao-Genton, two-stage Monte Carlo) and tests for covariate effects (Cox-Berman-Waller-Lawson, Kolmogorov-Smirnov, ANOVA) are also supported.
Author: Adrian Baddeley [aut, cre, cph] ,
Rolf Turner [aut, cph] ,
Ege Rubak [aut, cph] ,
Kasper Klitgaard Berthelsen [ctb],
Warick Brown [cph],
Achmad Choiruddin [ctb],
Ya-Mei Chang [ctb],
Jean-Francois Coeurjolly [ctb],
Lucia Cobo Sanchez [ctb, cph],
Ottma [...truncated...]
Maintainer: Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>
Diff between spatstat.explore versions 3.8-0 dated 2026-03-22 and 3.8-1 dated 2026-05-24
DESCRIPTION | 16 MD5 | 118 +++--- NAMESPACE | 8 NEWS | 126 +++++++ R/Kest.R | 11 R/Kinhom.R | 12 R/Kmeasure.R | 42 +- R/Kmulti.R | 16 R/Kmulti.inhom.R | 12 R/Kscaled.R | 11 R/Ksector.R | 10 R/bw.pcf.R | 5 R/bw.stoyan.R | 37 +- R/circdensity.R | 23 - R/density.ppp.R | 25 - R/density.psp.R | 6 R/densityHeat.ppp.R | 13 R/edgeRipley.R | 12 R/envelopeEngine.R | 27 + R/fv.R | 8 R/localK.R | 7 R/localKcross.R | 7 R/markcorr.R | 5 R/nnorient.R | 4 R/pairorient.R | 13 R/pcf.R | 214 ++++++++---- R/pcfinhom.R | 46 +- R/pcfmulti.R | 52 ++ R/pcfmulti.inhom.R | 55 ++- R/plot.fv.R | 35 + R/rose.R | 692 ++++++++++++++++++++++++++------------- R/wtdclosepair.R | 7 build/partial.rdb |binary inst/doc/packagesizes.txt | 1 inst/info/packagesizes.txt | 1 man/Smooth.ppp.Rd | 18 - man/as.fv.Rd | 16 man/bw.stoyan.Rd | 57 ++- man/circdensity.Rd | 18 - man/density.ppp.Rd | 19 + man/density.psp.Rd | 15 man/edge.Ripley.Rd | 21 - man/edge.Trans.Rd | 3 man/macros/defns.Rd | 1 man/nnorient.Rd | 14 man/pcf.ppp.Rd | 75 +++- man/pcfcross.Rd | 5 man/pcfcross.inhom.Rd | 5 man/pcfdot.Rd | 5 man/pcfdot.inhom.Rd | 5 man/pcfinhom.Rd | 39 +- man/pcfmulti.Rd | 14 man/pcfmulti.inhom.Rd | 24 + man/plot.fv.Rd | 3 man/relrisk.ppp.Rd | 12 man/rose.Rd | 225 ++++++++++-- man/spatstat.explore-internal.Rd | 35 + man/spatstat.explore-package.Rd | 2 src/ripleypoly.h | 16 tests/testsD.R | 13 60 files changed, 1693 insertions(+), 644 deletions(-)
More information about spatstat.explore at CRAN
Permanent link
Title: Clinical Publication
Description: Accelerate the process from clinical data to medical publication,
including clinical data cleaning, significant result screening, and the
generation of publish-ready tables and figures.
Author: Yue Niu [aut, cre, cph] ,
Keyun Wang [aut]
Maintainer: Yue Niu <niuyuesam@163.com>
Diff between clinpubr versions 1.3.0 dated 2026-03-07 and 1.4.0 dated 2026-05-24
DESCRIPTION | 17 MD5 | 115 - NAMESPACE | 2 NEWS.md | 12 R/baseline_table.R | 13 R/check_nonnum.R | 2 R/classif_model_compare.R | 2 R/combine_files.R | 2 R/data_overview.R | 14 R/data_screen.R | 43 R/exclusion_count.R | 9 R/extract_num.R | 64 R/get_valid_subset.R | 348 ++- R/initial_cleaning.R | 144 + R/merge.R | 1048 +++++++++- R/misc.R | 8 R/predictor_effect_plot.R | 4 R/regressions.R | 16 R/time_roc.R | 19 R/to_date.R | 59 R/unit_standardize.R | 355 ++- README.md | 3 build |only inst |only man/auto_encoding_repair.Rd |only man/detect_outliers.Rd | 94 man/first_mode.Rd | 2 man/get_valid_subset.Rd | 23 man/keep_by_keyword.Rd | 110 - man/merge_by_range.Rd |only man/merge_by_substring.Rd | 23 man/regression_scan.Rd | 2 man/screen_data_list.Rd | 290 +- man/time_roc_plot.Rd | 11 man/unit_standardize.Rd | 5 man/unit_view.Rd | 5 man/value_initial_cleaning.Rd | 12 tests/testthat/_snaps/predictor_effect_plot/predictor-effect-logistic-categorical-sex.svg | 4 tests/testthat/_snaps/regressions.md | 40 tests/testthat/test-check_nonnum.R | 3 tests/testthat/test-data_overview.R | 539 ++--- tests/testthat/test-data_screen.R | 86 tests/testthat/test-exclusion_count.R | 9 tests/testthat/test-get_valid_subset.R | 184 + tests/testthat/test-initial_cleaning.R | 214 +- tests/testthat/test-mark_outlier.R | 276 +- tests/testthat/test-merge.R | 257 ++ tests/testthat/test-misc.R | 2 tests/testthat/test-multichoice.R | 14 tests/testthat/test-regressions.R | 3 tests/testthat/test-unit_standardize.R | 3 vignettes |only 52 files changed, 3312 insertions(+), 1198 deletions(-)
Title: Utility Functions for Plotting
Description: Provides utility functions for plotting. Includes functions for color manipulation, plot customization, panel size control, data optimization for plots, and layout adjustments.
Author: Meng Xu [aut, cre] ,
Haoliang Zhu [aut]
Maintainer: Meng Xu <mengxu98@qq.com>
Diff between thisplot versions 0.3.8 dated 2026-04-24 and 0.4.0 dated 2026-05-24
DESCRIPTION | 31 ++++++++++++++----------- MD5 | 14 ++++++----- NAMESPACE | 1 NEWS.md | 10 ++++++++ R/DimDataPlot.R |only R/StatPlot.R | 64 ++++++++++++++++++++++++++++++++++++++++++++++++++--- R/reexports.R | 8 +++++- man/DimDataPlot.Rd |only man/StatPlot.Rd | 7 +++-- 9 files changed, 108 insertions(+), 27 deletions(-)
Title: Profile Boosting Framework for Parametric Models
Description: A profile boosting framework for feature selection in parametric models.
It offers a unified interface pboost() and several wrapped models, including linear model, generalized linear models, quantile regression, Cox proportional hazards model, beta regression, spatial auto-regressive models.
Author: Zengchao Xu [aut, cre, cph]
Maintainer: Zengchao Xu <zengc.xu@aliyun.com>
Diff between pboost versions 0.4.8 dated 2026-05-13 and 0.4.11 dated 2026-05-24
DESCRIPTION | 11 ++-- MD5 | 70 ++++++++++++++++--------------- NAMESPACE | 19 +++++++- NEWS.md | 23 ++++++++++ R/fbetareg.R | 3 - R/fcoxph.R | 3 - R/fglm.R | 7 --- R/flm.R | 7 --- R/frq.R | 74 +++++++++++++++++++++++++++++++-- R/frs.R | 4 - R/fsar.R | 103 ++++++++++++++++++++++++++++++++++++---------- R/pbetareg.R | 4 - R/pboost-package.R | 4 + R/pboost.R | 6 +- R/pcoxph.R | 4 - R/penalization.R | 3 - R/penalty-glmnet.R | 4 - R/penalty-ncvreg.R | 4 - R/penalty-rq.R | 4 - R/penalty-sar.R | 2 R/pglm.R | 12 +---- R/plm.R | 16 ++----- R/prq.R | 69 ++++++++++++++++++++++++++++-- R/psar.R | 100 +++++++++++++++++++++++++++++++++++++------- build/partial.rdb |binary man/coef.penaltyglmnet.Rd |only man/coef.penaltyncvreg.Rd |only man/coef.penaltyrq.Rd |only man/frq.Rd | 23 ++++++++++ man/frs.Rd | 6 +- man/fsar.Rd | 59 ++++++++++++++++++++++++-- man/pboost-package.Rd | 5 ++ man/pboost.Rd | 6 +- man/penalization.Rd |only man/pglm.Rd | 4 - man/plm.Rd | 8 +-- man/prq.Rd | 26 ++++++++++- man/psar.Rd | 80 ++++++++++++++++++++++++++++++----- 38 files changed, 603 insertions(+), 170 deletions(-)
Title: Random Generation Functionality for the 'spatstat' Family
Description: Functionality for random generation of spatial data in the 'spatstat' family of packages.
Generates random spatial patterns of points according to many simple rules (complete spatial randomness,
Poisson, binomial, random grid, systematic, cell), randomised alteration of patterns
(thinning, random shift, jittering), simulated realisations of random point processes including
simple sequential inhibition, Matern inhibition models, Neyman-Scott cluster processes
(using direct, Brix-Kendall, or hybrid algorithms),
log-Gaussian Cox processes, product shot noise cluster processes
and Gibbs point processes (using Metropolis-Hastings birth-death-shift algorithm,
alternating Gibbs sampler, or coupling-from-the-past perfect simulation).
Also generates random spatial patterns of line segments,
random tessellations, and random images (random noise, random mosaics).
Excludes random generation on a linear network,
which is covered by the separate package 'spatstat.linnet'.
Author: Adrian Baddeley [aut, cre, cph] ,
Rolf Turner [aut, cph] ,
Ege Rubak [aut, cph] ,
Tilman Davies [aut, cph] ,
Kasper Klitgaard Berthelsen [ctb, cph],
David Bryant [ctb, cph],
Ya-Mei Chang [ctb, cph],
Ute Hahn [ctb],
Abdollah Jalilian [ctb],
Dominic Sc [...truncated...]
Maintainer: Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>
Diff between spatstat.random versions 3.4-5 dated 2026-03-22 and 3.5-0 dated 2026-05-24
DESCRIPTION | 16 ++--- MD5 | 31 +++++----- NAMESPACE | 17 +++++ NEWS | 28 +++++++++ R/clusterinfo.R | 55 ++++++++++++++---- R/random.R | 61 ++++++++++++++++++++ R/rdiffuse.R |only R/truncpois.R | 117 +++++++++++++++++++++++++++++++++++++++- build/partial.rdb |binary inst/doc/packagesizes.txt | 1 inst/info/packagesizes.txt | 1 man/macros/defns.Rd | 1 man/rUnround.Rd |only man/rdiffuse.Rd |only man/rpoistrunc.Rd | 45 ++++++++++++--- man/spatstat.random-internal.Rd | 5 + man/spatstat.random-package.Rd | 33 ++++++++--- tests/Random.R | 91 ++++++++++++++++++++++++++++++- 18 files changed, 446 insertions(+), 56 deletions(-)
More information about spatstat.random at CRAN
Permanent link
Title: Fused Extended Two-Way Fixed Effects
Description: Calculates the fused extended two-way fixed effects (FETWFE) estimator for unbiased and efficient estimation of difference-in-differences in panel data with staggered treatment adoption. This estimator eliminates bias inherent in conventional two-way fixed effects estimators, while also employing a novel bridge regression regularization approach to improve efficiency and yield valid standard errors. Also implements extended TWFE (etwfe) and bridge-penalized ETWFE (betwfe). Provides S3 classes for streamlined workflow and supports flexible tuning (ridge and rank-condition guarantees), automatic covariate centering/scaling, and detailed overall and cohort-specific effect estimates with valid standard errors. Includes simulation and formatting utilities, extensive diagnostic tools, vignettes, and examples. See Faletto (2025) (<doi:10.48550/arXiv.2312.05985>).
Author: Gregory Faletto [aut, cre]
Maintainer: Gregory Faletto <gfaletto@gmail.com>
Diff between fetwfe versions 1.5.0 dated 2025-07-02 and 1.10.0 dated 2026-05-23
fetwfe-1.10.0/fetwfe/DESCRIPTION | 13 fetwfe-1.10.0/fetwfe/MD5 | 156 fetwfe-1.10.0/fetwfe/NAMESPACE | 30 fetwfe-1.10.0/fetwfe/NEWS.md | 891 ++++ fetwfe-1.10.0/fetwfe/R/betwfe_class.R |only fetwfe-1.10.0/fetwfe/R/betwfe_core.R | 525 +- fetwfe-1.10.0/fetwfe/R/broom_methods.R |only fetwfe-1.10.0/fetwfe/R/class_helpers.R |only fetwfe-1.10.0/fetwfe/R/convert_dfs.R | 85 fetwfe-1.10.0/fetwfe/R/core_funcs.R | 1035 +++-- fetwfe-1.10.0/fetwfe/R/design_matrix.R |only fetwfe-1.10.0/fetwfe/R/etwfe_class.R | 259 - fetwfe-1.10.0/fetwfe/R/etwfe_core.R | 1825 --------- fetwfe-1.10.0/fetwfe/R/event_study.R |only fetwfe-1.10.0/fetwfe/R/fetwfe.R | 643 ++- fetwfe-1.10.0/fetwfe/R/fetwfe_class.R | 290 - fetwfe-1.10.0/fetwfe/R/fetwfe_core.R | 1948 +--------- fetwfe-1.10.0/fetwfe/R/fusion_transforms.R |only fetwfe-1.10.0/fetwfe/R/gen_coefs.R |only fetwfe-1.10.0/fetwfe/R/gen_data.R |only fetwfe-1.10.0/fetwfe/R/getTes_class.R |only fetwfe-1.10.0/fetwfe/R/sim_classes.R |only fetwfe-1.10.0/fetwfe/R/sim_helpers.R |only fetwfe-1.10.0/fetwfe/R/twfeCovs.R | 425 +- fetwfe-1.10.0/fetwfe/R/twfeCovs_class.R |only fetwfe-1.10.0/fetwfe/R/utility.R | 1241 +++++- fetwfe-1.10.0/fetwfe/R/variance_machinery.R |only fetwfe-1.10.0/fetwfe/README.md | 28 fetwfe-1.10.0/fetwfe/build/vignette.rds |binary fetwfe-1.10.0/fetwfe/inst/CITATION | 2 fetwfe-1.10.0/fetwfe/inst/WORDLIST |only fetwfe-1.10.0/fetwfe/inst/doc/etwfe_betwfe_vignette.R |only fetwfe-1.10.0/fetwfe/inst/doc/etwfe_betwfe_vignette.Rmd |only fetwfe-1.10.0/fetwfe/inst/doc/etwfe_betwfe_vignette.html |only fetwfe-1.10.0/fetwfe/inst/doc/inference_vignette.R |only fetwfe-1.10.0/fetwfe/inst/doc/inference_vignette.Rmd |only fetwfe-1.10.0/fetwfe/inst/doc/inference_vignette.html |only fetwfe-1.10.0/fetwfe/inst/doc/simulation_vignette.Rmd | 1 fetwfe-1.10.0/fetwfe/inst/doc/simulation_vignette.html | 46 fetwfe-1.10.0/fetwfe/inst/doc/vignette.R | 108 fetwfe-1.10.0/fetwfe/inst/doc/vignette.Rmd | 164 fetwfe-1.10.0/fetwfe/inst/doc/vignette.html | 505 +- fetwfe-1.10.0/fetwfe/man/FETWFE_coefs-class.Rd |only fetwfe-1.10.0/fetwfe/man/FETWFE_simulated-class.Rd |only fetwfe-1.10.0/fetwfe/man/FETWFE_tes-class.Rd |only fetwfe-1.10.0/fetwfe/man/attgtToFetwfeDf.Rd | 24 fetwfe-1.10.0/fetwfe/man/augment.betwfe.Rd |only fetwfe-1.10.0/fetwfe/man/augment.etwfe.Rd |only fetwfe-1.10.0/fetwfe/man/augment.fetwfe.Rd |only fetwfe-1.10.0/fetwfe/man/betwfe-class.Rd |only fetwfe-1.10.0/fetwfe/man/betwfe.Rd | 115 fetwfe-1.10.0/fetwfe/man/betwfeWithSimulatedData.Rd | 63 fetwfe-1.10.0/fetwfe/man/etwfe.Rd | 106 fetwfe-1.10.0/fetwfe/man/etwfeToFetwfeDf.Rd | 15 fetwfe-1.10.0/fetwfe/man/etwfeWithSimulatedData.Rd | 58 fetwfe-1.10.0/fetwfe/man/eventStudy.Rd |only fetwfe-1.10.0/fetwfe/man/fetwfe.Rd | 98 fetwfe-1.10.0/fetwfe/man/fetwfeWithSimulatedData.Rd | 49 fetwfe-1.10.0/fetwfe/man/genCoefs.Rd | 2 fetwfe-1.10.0/fetwfe/man/genCoefsCore.Rd | 2 fetwfe-1.10.0/fetwfe/man/getTes.Rd | 29 fetwfe-1.10.0/fetwfe/man/glance.betwfe.Rd |only fetwfe-1.10.0/fetwfe/man/glance.etwfe.Rd |only fetwfe-1.10.0/fetwfe/man/glance.fetwfe.Rd |only fetwfe-1.10.0/fetwfe/man/simulateData.Rd | 6 fetwfe-1.10.0/fetwfe/man/simulateDataCore.Rd | 6 fetwfe-1.10.0/fetwfe/man/tidy.FETWFE_tes.Rd |only fetwfe-1.10.0/fetwfe/man/tidy.betwfe.Rd |only fetwfe-1.10.0/fetwfe/man/tidy.etwfe.Rd |only fetwfe-1.10.0/fetwfe/man/tidy.eventStudy.Rd |only fetwfe-1.10.0/fetwfe/man/tidy.fetwfe.Rd |only fetwfe-1.10.0/fetwfe/man/twfeCovs-class.Rd |only fetwfe-1.10.0/fetwfe/man/twfeCovs.Rd | 103 fetwfe-1.10.0/fetwfe/man/twfeCovsWithSimulatedData.Rd | 62 fetwfe-1.10.0/fetwfe/tests/testthat.R |only fetwfe-1.10.0/fetwfe/tests/testthat/_snaps |only fetwfe-1.10.0/fetwfe/tests/testthat/helper-panel-fixture.R |only fetwfe-1.10.0/fetwfe/tests/testthat/test-assemble-cluster-sandwich-78.R |only fetwfe-1.10.0/fetwfe/tests/testthat/test-augment-treatment-parity.R |only fetwfe-1.10.0/fetwfe/tests/testthat/test-betwfe-add-ridge-basis.R |only fetwfe-1.10.0/fetwfe/tests/testthat/test-betwfe-se-fix.R |only fetwfe-1.10.0/fetwfe/tests/testthat/test-betwfe.R | 510 +- fetwfe-1.10.0/fetwfe/tests/testthat/test-broom-methods.R |only fetwfe-1.10.0/fetwfe/tests/testthat/test-build-selected-out-result-80.R |only fetwfe-1.10.0/fetwfe/tests/testthat/test-class-helpers.R |only fetwfe-1.10.0/fetwfe/tests/testthat/test-class-validators.R |only fetwfe-1.10.0/fetwfe/tests/testthat/test-doc-slot-parity.R |only fetwfe-1.10.0/fetwfe/tests/testthat/test-est-omega-sqrt-inv.R |only fetwfe-1.10.0/fetwfe/tests/testthat/test-estimator-entry-snapshot.R |only fetwfe-1.10.0/fetwfe/tests/testthat/test-etwfe.R | 652 ++- fetwfe-1.10.0/fetwfe/tests/testthat/test-event_study.R |only fetwfe-1.10.0/fetwfe/tests/testthat/test-fetwfe-var2-fix.R |only fetwfe-1.10.0/fetwfe/tests/testthat/test-fetwfe.R | 577 ++ fetwfe-1.10.0/fetwfe/tests/testthat/test-genCoefs.R | 46 fetwfe-1.10.0/fetwfe/tests/testthat/test-getCohortATTsFinal-unification.R |only fetwfe-1.10.0/fetwfe/tests/testthat/test-getTes.R | 84 fetwfe-1.10.0/fetwfe/tests/testthat/test-idcohorts-collect-violations.R |only fetwfe-1.10.0/fetwfe/tests/testthat/test-lex-cohort-sort.R |only fetwfe-1.10.0/fetwfe/tests/testthat/test-method-preconditions.R |only fetwfe-1.10.0/fetwfe/tests/testthat/test-micro-helpers-83.R |only fetwfe-1.10.0/fetwfe/tests/testthat/test-prep-helpers-81.R |only fetwfe-1.10.0/fetwfe/tests/testthat/test-print-method-snapshot.R |only fetwfe-1.10.0/fetwfe/tests/testthat/test-simulateData.R | 80 fetwfe-1.10.0/fetwfe/tests/testthat/test-soft-bugs-56.R |only fetwfe-1.10.0/fetwfe/tests/testthat/test-twfeCovs.R | 397 +- fetwfe-1.10.0/fetwfe/vignettes/etwfe_betwfe_vignette.Rmd |only fetwfe-1.10.0/fetwfe/vignettes/inference_vignette.Rmd |only fetwfe-1.10.0/fetwfe/vignettes/simulation_vignette.Rmd | 1 fetwfe-1.10.0/fetwfe/vignettes/vignette.Rmd | 164 fetwfe-1.5.0/fetwfe/R/gen_funcs.R |only fetwfe-1.5.0/fetwfe/R/ols_calcs.R |only 111 files changed, 7641 insertions(+), 5828 deletions(-)
Title: Beta Autoregressive Moving Average Models
Description: Fits Beta Autoregressive Moving Average (BARMA) models for time series data distributed in the standard unit interval (0, 1). The estimation is performed via the conditional maximum likelihood method using the Broyden-Fletcher-Goldfarb-Shanno (BFGS) quasi-Newton algorithm. A ridge penalization scheme is available to improve numerical stability of the estimation, as proposed by Cribari-Neto, Costa and Fonseca (2025) <doi:10.1214/25-BJPS645>. The package includes tools for model fitting, diagnostic checking, and forecasting, along with two hydro-environmental datasets from Brazil. Based on the work of Rocha and Cribari-Neto (2009) <doi:10.1007/s11749-008-0112-z> and the associated erratum Rocha and Cribari-Neto (2017) <doi:10.1007/s11749-017-0528-4>. The original code was developed by Fabio M. Bayer.
Author: Everton da Costa [aut, cre] ,
Francisco Cribari-Neto [ctb, ths] ,
Vinicius Scher [ctb]
Maintainer: Everton da Costa <everto.cost@gmail.com>
Diff between betaARMA versions 1.1.0 dated 2026-04-15 and 1.2.0 dated 2026-05-23
DESCRIPTION | 19 - MD5 | 54 ++-- NAMESPACE | 31 ++ NEWS.md | 54 +++- R/barma.R | 603 +++++++++++++++++++++++----------------------- R/data.R |only R/fim_barma.R | 95 +++++-- R/forecast.barma.R | 25 + R/loglik_barma.R | 92 +++++-- R/plot.barma.R |only R/print.barma.R | 6 R/print.summary.barma.R | 96 +++++-- R/residuals.barma.R | 270 ++++++++++++++------ R/score_vector_barma.R | 132 +++++++--- R/summary.barma.R | 19 - R/utils_internal.R |only R/utils_optimizer.R |only README.md | 305 ++++++++++++++++++----- build/vignette.rds |only data |only inst/CITATION |only inst/REFERENCES.bib |only inst/WORDLIST | 61 +++- inst/doc |only man/barma.Rd | 205 ++++++++++----- man/brasilia_df.Rd |only man/brasilia_ts.Rd |only man/fim_barma.Rd | 31 +- man/loglik_barma.Rd | 47 +++ man/plot.barma.Rd |only man/residuals.barma.Rd | 112 ++++++-- man/score_vector_barma.Rd | 65 ++-- vignettes |only 33 files changed, 1585 insertions(+), 737 deletions(-)
Title: Animated Glass-Style Tabs and Multi-Select Filter for 'Shiny'
Description: Tools for creating animated glassmorphism-style tab
navigation and select filter widgets in 'Shiny' applications.
Provides a tab navigation component with a sliding glass halo
animation, a searchable multi-select dropdown, and a single-select
dropdown — all with multiple colour themes and server-side update
helpers. Tabs support icons, numeric badges, disable/enable toggling,
runtime append/remove, reactive rendering via 'renderGlassTabs()',
URL bookmarking, and compact mode for dashboard card layouts.
'glassTabCondition()' generates 'conditionalPanel()' condition strings
without needing to recall the internal input key pattern.
'glasstabs_news()' displays the release notes from the R console.
Built-in example apps can be launched with 'runGlassExample()'.
All widgets are compatible with standard 'Shiny' layouts and
'bs4Dash' dashboards.
For full documentation and examples see Arthur (2026)
<https://prigasg.github.io/glasstabs/>.
Author: George Arthur [aut, cre]
Maintainer: George Arthur <prigasgenthian48@gmail.com>
Diff between glasstabs versions 0.2.1 dated 2026-04-11 and 0.3.2 dated 2026-05-23
glasstabs-0.2.1/glasstabs/inst/examples/basic/testing_js_select.R |only glasstabs-0.3.2/glasstabs/DESCRIPTION | 26 glasstabs-0.3.2/glasstabs/MD5 | 111 - glasstabs-0.3.2/glasstabs/NAMESPACE | 8 glasstabs-0.3.2/glasstabs/NEWS.md | 185 +- glasstabs-0.3.2/glasstabs/R/dependencies.R | 97 + glasstabs-0.3.2/glasstabs/R/glassSelect.R | 90 glasstabs-0.3.2/glasstabs/R/glass_multiselect.R | 102 - glasstabs-0.3.2/glasstabs/R/glass_select_theme.R | 69 glasstabs-0.3.2/glasstabs/R/glass_tab_theme.R | 91 glasstabs-0.3.2/glasstabs/R/glass_tabs.R | 562 +++++- glasstabs-0.3.2/glasstabs/R/zzz.R | 115 + glasstabs-0.3.2/glasstabs/README.md | 80 glasstabs-0.3.2/glasstabs/inst/WORDLIST | 26 glasstabs-0.3.2/glasstabs/inst/cheatsheet |only glasstabs-0.3.2/glasstabs/inst/doc/cheatsheet.R | 123 + glasstabs-0.3.2/glasstabs/inst/doc/cheatsheet.Rmd | 157 + glasstabs-0.3.2/glasstabs/inst/doc/cheatsheet.html | 362 ++- glasstabs-0.3.2/glasstabs/inst/doc/getting-started.R | 10 glasstabs-0.3.2/glasstabs/inst/doc/getting-started.Rmd | 10 glasstabs-0.3.2/glasstabs/inst/doc/getting-started.html | 10 glasstabs-0.3.2/glasstabs/inst/doc/glassSelect.R | 6 glasstabs-0.3.2/glasstabs/inst/doc/glassSelect.Rmd | 6 glasstabs-0.3.2/glasstabs/inst/doc/glassSelect.html | 6 glasstabs-0.3.2/glasstabs/inst/doc/multiselect.R | 6 glasstabs-0.3.2/glasstabs/inst/doc/multiselect.Rmd | 6 glasstabs-0.3.2/glasstabs/inst/doc/multiselect.html | 6 glasstabs-0.3.2/glasstabs/inst/doc/tabs.R | 2 glasstabs-0.3.2/glasstabs/inst/doc/tabs.Rmd | 2 glasstabs-0.3.2/glasstabs/inst/doc/tabs.html | 2 glasstabs-0.3.2/glasstabs/inst/examples/basic/app.R | 2 glasstabs-0.3.2/glasstabs/inst/examples/bs4dash/app.R | 25 glasstabs-0.3.2/glasstabs/inst/examples/dashboard/app.R | 2 glasstabs-0.3.2/glasstabs/inst/examples/smoke-test/app.R | 30 glasstabs-0.3.2/glasstabs/inst/www/glass.css | 482 ++++- glasstabs-0.3.2/glasstabs/inst/www/glass.js | 912 +++++++--- glasstabs-0.3.2/glasstabs/man/disableGlassTab.Rd |only glasstabs-0.3.2/glasstabs/man/glassFilterTags.Rd | 5 glasstabs-0.3.2/glasstabs/man/glassMultiSelect.Rd | 14 glasstabs-0.3.2/glasstabs/man/glassSelect.Rd | 8 glasstabs-0.3.2/glasstabs/man/glassTabCondition.Rd |only glasstabs-0.3.2/glasstabs/man/glassTabPanel.Rd | 15 glasstabs-0.3.2/glasstabs/man/glassTabsOutput.Rd |only glasstabs-0.3.2/glasstabs/man/glassTabsServer.Rd | 63 glasstabs-0.3.2/glasstabs/man/glassTabsUI.Rd | 15 glasstabs-0.3.2/glasstabs/man/glass_select_theme.Rd | 52 glasstabs-0.3.2/glasstabs/man/glass_tab_theme.Rd | 52 glasstabs-0.3.2/glasstabs/man/glasstabs_news.Rd |only glasstabs-0.3.2/glasstabs/man/renderGlassTabs.Rd |only glasstabs-0.3.2/glasstabs/man/runGlassExample.Rd |only glasstabs-0.3.2/glasstabs/man/updateGlassMultiSelect.Rd | 4 glasstabs-0.3.2/glasstabs/man/updateGlassTabBadge.Rd |only glasstabs-0.3.2/glasstabs/man/useGlassTabs.Rd | 4 glasstabs-0.3.2/glasstabs/tests/testthat/test-new-features.R |only glasstabs-0.3.2/glasstabs/tests/testthat/test-public-readiness.R |only glasstabs-0.3.2/glasstabs/tests/testthat/test-roadmap-phase1.R |only glasstabs-0.3.2/glasstabs/tests/testthat/test-tabs.R | 60 glasstabs-0.3.2/glasstabs/vignettes/cheatsheet.Rmd | 157 + glasstabs-0.3.2/glasstabs/vignettes/getting-started.Rmd | 10 glasstabs-0.3.2/glasstabs/vignettes/glassSelect.Rmd | 6 glasstabs-0.3.2/glasstabs/vignettes/multiselect.Rmd | 6 glasstabs-0.3.2/glasstabs/vignettes/tabs.Rmd | 2 62 files changed, 3380 insertions(+), 822 deletions(-)
Title: Examples of Datasets on Allometry
Description: Examples of datasets on allometry, the study of the relationship of biological traits to body size. This package contains the datasets of morphological measurement taken from 113 maritime earwigs (Anisolabis maritima) by Matsuzawa and Konuma (2025) <doi:10.1093/biolinnean/blaf031>, and taken from 507 Helm’s stag beetles (Geodorcus helmsi) collected by Grey et al. (2025) <doi:10.1093/biolinnean/blae024>.
Author: Takeshi Abe [aut, cre]
Maintainer: Takeshi Abe <tabe@fixedpoint.jp>
Diff between allometry versions 0.1.1 dated 2025-07-17 and 0.2.0 dated 2026-05-23
allometry-0.1.1/allometry/COPYING |only allometry-0.2.0/allometry/DESCRIPTION | 10 +++-- allometry-0.2.0/allometry/MD5 | 12 +++--- allometry-0.2.0/allometry/NEWS.md | 4 ++ allometry-0.2.0/allometry/R/data.R | 30 ++++++++++++++++- allometry-0.2.0/allometry/README.md | 15 ++++++-- allometry-0.2.0/allometry/data/helmsi.rda |only allometry-0.2.0/allometry/man/helmsi.Rd |only allometry-0.2.0/allometry/tests/testthat/test-helmsi.R |only 9 files changed, 58 insertions(+), 13 deletions(-)
Title: Spatial Projection of Network Signals along Geodesic Paths
Description: For a given graph containing vertices, edges, and a signal
associated with the vertices, the 'PathwaySpace' package performs a convolution
operation, which involves a weighted combination of neighboring vertices and
their associated signals. The package uses a decay function to project these
signals, creating geodesic paths on a 2D-image space. 'PathwaySpace' has various
applications, such as visualizing network data in a graphical format that
highlights the relationships and signal strengths between vertices. By
combining graph theory, signal processing, and visualization, 'PathwaySpace'
provides a way of representing graph data on a continuous projection space.
Based on methods introduced in Tercan et al. (2025)
<doi:10.1016/j.xpro.2025.103681> and Ellrott et al. (2025)
<doi:10.1016/j.ccell.2024.12.002>.
Author: Sysbiolab Team [aut],
Victor Apolonio [ctb],
Jonathan Back [ctb],
Lana Querne [ctb],
Vinicius Chagas [ctb],
Bahar Tercan [ctb],
Mauro Castro [cre]
Maintainer: Mauro Castro <mauro.a.castro@gmail.com>
Diff between PathwaySpace versions 1.2.0 dated 2026-04-25 and 1.3.0 dated 2026-05-23
DESCRIPTION | 8 +-- MD5 | 78 ++++++++++++++++++------------------ R/pspaceDecay.R | 6 +- R/pspaceMisc.R | 30 ++----------- R/pspacePlots.R | 2 R/pspaceWatershed.R | 2 build/partial.rdb |binary build/vignette.rds |binary inst/NEWS.Rd | 19 ++++++++ inst/doc/PathwaySpace.R | 2 inst/doc/PathwaySpace.Rmd | 6 +- inst/doc/PathwaySpace.html | 47 +++++++++++---------- man/CGC_20211118.Rd | 2 man/Hallmarks_v2023_1_Hs_symbols.Rd | 6 +- man/PCv12_pruned_igraph.Rd | 14 +++--- man/PathwaySpace-package.Rd | 53 +++++++++++++----------- man/buildPathwaySpace.Rd | 12 ++--- man/circularProjection-methods.Rd | 32 +++++++------- man/expDecay.Rd | 42 +++++++++---------- man/getNearestNode.Rd | 4 - man/getPathwaySpace-methods.Rd | 6 +- man/linearDecay.Rd | 46 ++++++++++----------- man/pathDistances.Rd | 4 - man/plotPathDistances.Rd | 2 man/plotPathwaySpace-methods.Rd | 30 ++++++------- man/polarProjection-methods.Rd | 44 ++++++++++---------- man/pspace.pals.Rd | 4 - man/signalAggregation.Rd | 8 +-- man/signalDecay.Rd | 2 man/silhouetteMapping-methods.Rd | 10 ++-- man/summitMapping-methods.Rd | 8 +-- man/summitWatershed.Rd | 2 man/vertexSignal-accessors.Rd | 2 man/weibullDecay.Rd | 48 +++++++++++----------- vignettes/PathwaySpace.Rmd | 6 +- vignettes/bibliography.bib | 28 +++++++++++- vignettes/figures/fig1.png |binary vignettes/figures/fig3.png |binary vignettes/figures/fig4.png |binary vignettes/figures/fig8.png |binary 40 files changed, 321 insertions(+), 294 deletions(-)
Title: Object-Oriented Diagram Plots with 'ggplot2'
Description: Creates diagrams with an object-oriented approach. Geometric
objects have computed properties with information about themselves
(e.g., their area) or about their relationships with other objects
(e.g, the distance between their edges). The objects have methods to
convert them to geoms that can be plotted in 'ggplot2'.
Author: W. Joel Schneider [aut, cre]
Maintainer: W. Joel Schneider <w.joel.schneider@gmail.com>
Diff between ggdiagram versions 0.1.1 dated 2025-09-14 and 0.2.0 dated 2026-05-23
DESCRIPTION | 24 MD5 | 158 +- NAMESPACE | 170 +- NEWS.md | 21 R/a_early.R | 988 +++++++++------ R/angles.R | 283 ++-- R/arcs.R | 741 ++++++----- R/bezier.R | 624 ++++++--- R/circles.R | 407 +++--- R/colors.R | 150 +- R/distances.R | 63 R/ellipses.R | 1485 ++++++++++++---------- R/equations.R | 227 ++- R/inside.R | 92 - R/intersections.R | 1192 ++++++++++-------- R/labels.R | 575 ++++---- R/lines.R | 466 +++---- R/paths.R | 418 +++--- R/points.R | 830 +++++++----- R/polygons.R | 2354 +++++++++++++++++------------------- R/rectangles.R | 469 ++++--- R/rescale.R |only R/rotate.R | 104 - R/segments.R | 388 +++-- R/str.R | 124 - R/style.R | 183 +- R/zzz.R | 2 README.md | 3 build/vignette.rds |binary inst/WORDLIST | 4 inst/doc/ggdiagram.R | 2 inst/doc/ggdiagram.html | 7 inst/doc/ggdiagram.qmd | 2 man/class_color.Rd | 30 man/class_margin.Rd |only man/data2shape.Rd | 3 man/equation.Rd | 13 man/ggdiagram-package.Rd | 5 man/ggdiagram.Rd | 2 man/lead_cycle.Rd |only man/map2_ob.Rd |only man/map_ob.Rd | 2 man/mean_color.Rd | 9 man/ob_angle.Rd | 18 man/ob_arc.Rd | 62 man/ob_array.Rd | 15 man/ob_bezier.Rd | 37 man/ob_circle.Rd | 64 man/ob_covariance.Rd | 35 man/ob_ellipse.Rd | 42 man/ob_intercept.Rd | 29 man/ob_label.Rd | 22 man/ob_latex.Rd | 6 man/ob_line.Rd | 22 man/ob_ngon.Rd | 59 man/ob_path.Rd | 25 man/ob_point.Rd | 36 man/ob_polygon.Rd | 18 man/ob_rectangle.Rd | 33 man/ob_reuleaux.Rd | 47 man/ob_segment.Rd | 32 man/ob_style.Rd | 4 man/ob_variance.Rd | 31 man/reexports.Rd | 2 man/rescale.Rd |only man/subscript.Rd | 5 tests/testthat/test-addition.R | 133 -- tests/testthat/test-angle.R | 81 + tests/testthat/test-arc.R |only tests/testthat/test-bezier.R |only tests/testthat/test-circle.R | 287 +--- tests/testthat/test-color.R |only tests/testthat/test-distance.R |only tests/testthat/test-ellipse.R |only tests/testthat/test-equation.R |only tests/testthat/test-inside.R |only tests/testthat/test-intersections.R |only tests/testthat/test-label.R |only tests/testthat/test-latex.R |only tests/testthat/test-line.R | 138 ++ tests/testthat/test-misc.R | 173 ++ tests/testthat/test-path.R |only tests/testthat/test-point.R | 161 ++ tests/testthat/test-polygon.R |only tests/testthat/test-rectangle.R |only tests/testthat/test-rescale.R |only tests/testthat/test-rotate.R |only tests/testthat/test-segment.R |only tests/testthat/test-str.R |only tests/testthat/test-style.R | 301 ++++ vignettes/ggdiagram.qmd | 2 91 files changed, 8486 insertions(+), 6054 deletions(-)
Title: Risk Tool Library - Trading, Risk, Analytics for Commodities
Description: A toolkit for Commodities 'analytics', risk management and
trading professionals. Includes functions for API calls to
<https://www.zema.global/platforms/zema-marketplace>, <https://developer.genscape.com/>,
and <https://www.bankofcanada.ca/valet/docs>.
Author: Philippe Cote [aut, cre],
Nima Safaian [aut]
Maintainer: Philippe Cote <pcote@ualberta.ca>
Diff between RTL versions 1.3.7 dated 2025-02-25 and 1.3.9 dated 2026-05-23
RTL-1.3.7/RTL/R/morningstar.R |only RTL-1.3.7/RTL/data/eurodollar.rda |only RTL-1.3.7/RTL/data/fxfwd.rda |only RTL-1.3.7/RTL/data/tradeprocess.rda |only RTL-1.3.7/RTL/man/eurodollar.Rd |only RTL-1.3.7/RTL/man/fxfwd.Rd |only RTL-1.3.7/RTL/man/tradeprocess.Rd |only RTL-1.3.9/RTL/DESCRIPTION | 19 - RTL-1.3.9/RTL/MD5 | 96 ++++----- RTL-1.3.9/RTL/NAMESPACE | 1 RTL-1.3.9/RTL/NEWS.md | 280 ----------------------------- RTL-1.3.9/RTL/R/chart_spreads.R | 6 RTL-1.3.9/RTL/R/data.R | 26 -- RTL-1.3.9/RTL/R/efficientFrontier.R | 1 RTL-1.3.9/RTL/R/promptBeta.R | 31 --- RTL-1.3.9/RTL/R/swapInfo.R | 6 RTL-1.3.9/RTL/R/tradeStats.R | 1 RTL-1.3.9/RTL/R/tradeStrategyDY.R | 1 RTL-1.3.9/RTL/R/tradeStrategySMA.R | 1 RTL-1.3.9/RTL/R/zema.R |only RTL-1.3.9/RTL/README.md | 12 - RTL-1.3.9/RTL/data/cma.rda |binary RTL-1.3.9/RTL/data/cushing.rda |binary RTL-1.3.9/RTL/data/dflong.rda |binary RTL-1.3.9/RTL/data/dfwide.rda |binary RTL-1.3.9/RTL/data/eiaStocks.rda |binary RTL-1.3.9/RTL/data/eiaStorageCap.rda |binary RTL-1.3.9/RTL/data/expiry_table.rda |binary RTL-1.3.9/RTL/data/fizdiffs.rda |binary RTL-1.3.9/RTL/data/futuresRef.rda |binary RTL-1.3.9/RTL/data/holidaysOil.rda |binary RTL-1.3.9/RTL/data/spot2futConvergence.rda |binary RTL-1.3.9/RTL/data/steo.rda |binary RTL-1.3.9/RTL/data/stocks.rda |binary RTL-1.3.9/RTL/data/tickers_eia.rda |binary RTL-1.3.9/RTL/data/tradeCycle.rda |binary RTL-1.3.9/RTL/data/tsQuotes.rda |binary RTL-1.3.9/RTL/data/usSwapCurves.rda |binary RTL-1.3.9/RTL/data/usSwapCurvesPar.rda |binary RTL-1.3.9/RTL/data/wtiSwap.rda |binary RTL-1.3.9/RTL/inst/WORDLIST | 35 --- RTL-1.3.9/RTL/man/RTL-package.Rd | 3 RTL-1.3.9/RTL/man/chart_spreads.Rd | 6 RTL-1.3.9/RTL/man/dflong.Rd | 3 RTL-1.3.9/RTL/man/dfwide.Rd | 3 RTL-1.3.9/RTL/man/getCurve.Rd | 16 - RTL-1.3.9/RTL/man/getPrice.Rd | 21 -- RTL-1.3.9/RTL/man/getPrices.Rd | 12 - RTL-1.3.9/RTL/man/spot2futConvergence.Rd | 2 RTL-1.3.9/RTL/man/spot2futCurve.Rd | 3 RTL-1.3.9/RTL/man/swapInfo.Rd | 6 RTL-1.3.9/RTL/man/usSwapCurves.Rd | 3 RTL-1.3.9/RTL/man/wtiSwap.Rd | 3 53 files changed, 115 insertions(+), 482 deletions(-)
Title: Tools for the Analysis of Clustered Data in QCA
Description: Clustered set-relational data in Qualitative Comparative Analysis
(QCA) can have a hierarchical structure, a panel structure or repeated cross
sections. 'QCAcluster' allows researchers to supplement the analysis
of pooled the data with a differentiated perspective focusing on selected
partitions of the data. The pooled data can be partitioned along the
dimensions of the clustered data (individual cross sections or time series)
to perform partition-specific truth table minimization. Empirical
researchers can further calculate the weight that each partition has on the
parameters of the pooled solution and the diversity of the cases under
analysis within and across partitions
(see <https://ingorohlfing.github.io/QCAcluster/>).
Author: Ingo Rohlfing [aut, cre] ,
Ayjeren Bekmuratovna [aut],
Jan Schwalbach [aut]
Maintainer: Ingo Rohlfing <ingo.rohlfing@uni-passau.de>
This is a re-admission after prior archival of version 0.1.0 dated 2021-10-26
Diff between QCAcluster versions 0.1.0 dated 2021-10-26 and 0.2.0 dated 2026-05-23
DESCRIPTION | 37 - MD5 | 57 +-- NEWS.md |only R/partition_div.R | 4 R/partition_min.R | 12 R/partition_min_inter.R | 4 R/upset_conditions.R | 8 R/upset_configurations.R | 6 R/wop.R | 6 R/wop_inter.R | 4 README.md | 10 build/vignette.rds |binary inst/doc/Aggregation-over-partitions.R | 6 inst/doc/Aggregation-over-partitions.html | 427 +++++++++++++++++----- inst/doc/Diversity-of-partitions.R | 2 inst/doc/Diversity-of-partitions.html | 493 ++++++++++++++++++------- inst/doc/Minimization-of-partitions.R | 6 inst/doc/Minimization-of-partitions.html | 569 ++++++++++++++++++++++-------- inst/doc/Weight-of-partitions.R | 26 - inst/doc/Weight-of-partitions.html | 457 ++++++++++++++++++------ man/Grauvogel2014.Rd | 76 ++-- man/Schwarz2016.Rd | 66 +-- man/Thiem2011.Rd | 78 ++-- man/partition_div.Rd | 4 man/partition_min.Rd | 10 man/partition_min_inter.Rd | 4 man/upset_conditions.Rd | 84 ++-- man/upset_configurations.Rd | 6 man/wop.Rd | 6 man/wop_inter.Rd | 4 30 files changed, 1749 insertions(+), 723 deletions(-)
Title: Machine Learning Feature Selection for High Dimensional Survival
Data
Description: A unified, flexible framework for high dimensional feature
selection in the presence of a survival outcome. Provides multiple
machine learning approaches (Cox elastic net, random survival forest,
accelerated oblique random survival forest, gradient-boosted Cox,
stability selection, classical univariate Cox screening, pseudo-
observation bridging to arbitrary regression learners, and Fine-Gray
competing risks selection) under a single interface. Adds causal
survival forest estimation of heterogeneous treatment effects on
survival (experimental), conformal survival prediction with finite-
sample coverage guarantees, and time-dependent 'SHAP' explanations via
'SurvSHAP(t)'. Methodology is based on regularised Cox regression
(2011) <doi:10.18637/jss.v039.i05>, random survival forests (2008)
<doi:10.1214/08-AOAS169>, oblique random survival forests (2024)
<doi:10.1080/10618600.2023.2231048>, stability selection (2010)
<doi:10.1111/j.1467-9868.2010.00740.x>, causal su [...truncated...]
Author: Atanu Bhattacharjee [aut, cre]
Maintainer: Atanu Bhattacharjee <atanustat@gmail.com>
Diff between highMLR versions 0.1.1 dated 2022-07-18 and 1.0.1 dated 2026-05-23
highMLR-0.1.1/highMLR/R/hnscc.R |only highMLR-0.1.1/highMLR/R/mlclassCox.R |only highMLR-0.1.1/highMLR/R/mlclassKap.R |only highMLR-0.1.1/highMLR/R/mlhighCox.R |only highMLR-0.1.1/highMLR/R/mlhighFrail.R |only highMLR-0.1.1/highMLR/R/mlhighHet.R |only highMLR-0.1.1/highMLR/R/mlhighKap.R |only highMLR-0.1.1/highMLR/R/srdata.R |only highMLR-0.1.1/highMLR/man/mlclassCox.Rd |only highMLR-0.1.1/highMLR/man/mlclassKap.Rd |only highMLR-0.1.1/highMLR/man/mlhighCox.Rd |only highMLR-0.1.1/highMLR/man/mlhighFrail.Rd |only highMLR-0.1.1/highMLR/man/mlhighHet.Rd |only highMLR-0.1.1/highMLR/man/mlhighKap.Rd |only highMLR-1.0.1/highMLR/DESCRIPTION | 67 +++++++++++------- highMLR-1.0.1/highMLR/MD5 | 69 +++++++++++++------ highMLR-1.0.1/highMLR/NAMESPACE | 45 +++++++----- highMLR-1.0.1/highMLR/NEWS.md |only highMLR-1.0.1/highMLR/R/causal.R |only highMLR-1.0.1/highMLR/R/class-highmlr-fit.R |only highMLR-1.0.1/highMLR/R/companions.R |only highMLR-1.0.1/highMLR/R/conformal.R |only highMLR-1.0.1/highMLR/R/fit-aorsf.R |only highMLR-1.0.1/highMLR/R/fit-coxnet.R |only highMLR-1.0.1/highMLR/R/fit-finegray.R |only highMLR-1.0.1/highMLR/R/fit-pseudo.R |only highMLR-1.0.1/highMLR/R/fit-rsf.R |only highMLR-1.0.1/highMLR/R/fit-stability.R |only highMLR-1.0.1/highMLR/R/fit-univariate.R |only highMLR-1.0.1/highMLR/R/fit-xgboost.R |only highMLR-1.0.1/highMLR/R/highMLR-package.R |only highMLR-1.0.1/highMLR/R/highmlr.R |only highMLR-1.0.1/highMLR/README.md |only highMLR-1.0.1/highMLR/build |only highMLR-1.0.1/highMLR/data/hnscc.rda |binary highMLR-1.0.1/highMLR/data/srdata.rda |binary highMLR-1.0.1/highMLR/inst |only highMLR-1.0.1/highMLR/man/coef.highmlr_fit.Rd |only highMLR-1.0.1/highMLR/man/highMLR-package.Rd |only highMLR-1.0.1/highMLR/man/highmlr.Rd |only highMLR-1.0.1/highMLR/man/highmlr_causal.Rd |only highMLR-1.0.1/highMLR/man/highmlr_compare.Rd |only highMLR-1.0.1/highMLR/man/highmlr_conformal.Rd |only highMLR-1.0.1/highMLR/man/highmlr_explain.Rd |only highMLR-1.0.1/highMLR/man/highmlr_report.Rd |only highMLR-1.0.1/highMLR/man/highmlr_screen.Rd |only highMLR-1.0.1/highMLR/man/highmlr_stability.Rd |only highMLR-1.0.1/highMLR/man/hnscc.Rd | 28 ++++--- highMLR-1.0.1/highMLR/man/new_highmlr_fit.Rd |only highMLR-1.0.1/highMLR/man/plot.highmlr_conformal.Rd |only highMLR-1.0.1/highMLR/man/plot.highmlr_fit.Rd |only highMLR-1.0.1/highMLR/man/predict.highmlr_fit.Rd |only highMLR-1.0.1/highMLR/man/print.highmlr_conformal.Rd |only highMLR-1.0.1/highMLR/man/print.highmlr_fit.Rd |only highMLR-1.0.1/highMLR/man/srdata.Rd | 27 +++---- highMLR-1.0.1/highMLR/man/summary.highmlr_fit.Rd |only highMLR-1.0.1/highMLR/tests |only highMLR-1.0.1/highMLR/vignettes |only 58 files changed, 148 insertions(+), 88 deletions(-)
Title: Modeling Species Distributions in Three Dimensions
Description: Facilitates modeling species' ecological niches and
geographic distributions based on occurrences and environments that
have a vertical as well as horizontal component, and projecting models
into three-dimensional geographic space. Working in three dimensions is
useful in an aquatic context when the organisms one wishes to model can
be found across a wide range of depths in the water column. The package
also contains functions to automatically generate marine training
model training regions using machine learning, and interpolate and smooth
patchily sampled environmental rasters using thin plate splines.
Davis Rabosky AR, Cox CL, Rabosky DL, Title PO, Holmes IA, Feldman A, McGuire JA (2016) <doi:10.1038/ncomms11484>.
Nychka D, Furrer R, Paige J, Sain S (2021) <doi:10.5065/D6W957CT>.
Pateiro-Lopez B, Rodriguez-Casal A (2022) <https://CRAN.R-project.org/package=alphahull>.
Author: Hannah L. Owens [aut, cre, cph] ,
Emmaline Sheahan [aut] ,
Carsten Rahbek [aut]
Maintainer: Hannah L. Owens <hannah.owens@gmail.com>
This is a re-admission after prior archival of version 0.2.3 dated 2025-07-18
Diff between voluModel versions 0.2.3 dated 2025-07-18 and 0.2.4 dated 2026-05-23
voluModel-0.2.3/voluModel/man/figures/SoMePreview-01.png |only voluModel-0.2.3/voluModel/man/figures/SoMePreview.eps |only voluModel-0.2.4/voluModel/.aspell |only voluModel-0.2.4/voluModel/DESCRIPTION | 19 +-- voluModel-0.2.4/voluModel/MD5 | 62 ++++++---- voluModel-0.2.4/voluModel/NAMESPACE | 9 + voluModel-0.2.4/voluModel/NEWS.md | 5 voluModel-0.2.4/voluModel/R/cleanDepth.R |only voluModel-0.2.4/voluModel/R/depthMatch.R |only voluModel-0.2.4/voluModel/R/env_stack_transform.R |only voluModel-0.2.4/voluModel/R/maxent_3D.R |only voluModel-0.2.4/voluModel/R/modelDiagnostics.R | 21 +-- voluModel-0.2.4/voluModel/R/partition_3D.R |only voluModel-0.2.4/voluModel/R/threshold_3D.R |only voluModel-0.2.4/voluModel/R/visualizations.R | 2 voluModel-0.2.4/voluModel/build/vignette.rds |binary voluModel-0.2.4/voluModel/inst/doc/a_Introduction.Rmd | 2 voluModel-0.2.4/voluModel/inst/doc/a_Introduction.html | 20 +-- voluModel-0.2.4/voluModel/inst/doc/b_RasterProcessing.html | 12 - voluModel-0.2.4/voluModel/inst/doc/c_DataSampling.Rmd | 2 voluModel-0.2.4/voluModel/inst/doc/c_DataSampling.html | 28 ++-- voluModel-0.2.4/voluModel/inst/doc/d_Visualization.Rmd | 2 voluModel-0.2.4/voluModel/inst/doc/d_Visualization.html | 14 +- voluModel-0.2.4/voluModel/inst/doc/e_GLMWorkflow.R | 7 - voluModel-0.2.4/voluModel/inst/doc/e_GLMWorkflow.Rmd | 9 + voluModel-0.2.4/voluModel/inst/doc/e_GLMWorkflow.html | 39 +++--- voluModel-0.2.4/voluModel/man/MESS3D.Rd | 11 + voluModel-0.2.4/voluModel/man/cleanDepth.Rd |only voluModel-0.2.4/voluModel/man/depthMatch.Rd |only voluModel-0.2.4/voluModel/man/env_stack_transform.Rd |only voluModel-0.2.4/voluModel/man/maxent_3D.Rd |only voluModel-0.2.4/voluModel/man/partition_3D.Rd |only voluModel-0.2.4/voluModel/man/threshold_3D.Rd |only voluModel-0.2.4/voluModel/tests/testthat/test-MaxentModellingFunctions.R |only voluModel-0.2.4/voluModel/tests/testthat/test-cleanDepth.R |only voluModel-0.2.4/voluModel/tests/testthat/test-depthMatch.R |only voluModel-0.2.4/voluModel/tests/testthat/test-env_stack_transform.R |only voluModel-0.2.4/voluModel/tests/testthat/test-modelDiagnostics.R | 15 +- voluModel-0.2.4/voluModel/vignettes/a_Introduction.Rmd | 2 voluModel-0.2.4/voluModel/vignettes/c_DataSampling.Rmd | 2 voluModel-0.2.4/voluModel/vignettes/d_Visualization.Rmd | 2 voluModel-0.2.4/voluModel/vignettes/e_GLMWorkflow.Rmd | 9 + 42 files changed, 177 insertions(+), 117 deletions(-)
Title: Compare and Verify File Contents
Description: Extendable 'R6' file comparison classes, including a 'shiny' app for combining the comparison functionality into a file comparison application. The package idea originates from pharma companies' drug development processes, where statisticians and statistical programmers need to review and compare different versions of the same outputs and datasets. The package implementation itself is not tied to any specific industry and can be used in any context for easy file comparisons between different file version sets.
Author: Juha Javanainen [aut, cre],
Tiina Kirsilae [ctb],
Anna Wiksten [ctb]
Maintainer: Juha Javanainen <ejuhjav@gmail.com>
Diff between verifyr2 versions 1.1.0 dated 2026-01-08 and 1.2.0 dated 2026-05-23
DESCRIPTION | 10 MD5 | 56 - NEWS.md | 21 R/BinaryFileComparator.R | 10 R/Config.R | 138 ++- R/RtfFileComparator.R | 25 R/TxtFileComparator.R | 45 - R/list_folder_files.R | 4 inst/extdata/base_files/file11_spaces.txt |only inst/extdata/compare_files/file11_spaces.txt |only inst/shiny_examples/app/app.R | 437 +++++++--- inst/shiny_examples/app/report_styles.css |only inst/shiny_examples/app/report_template.Rmd |only inst/shiny_examples/app/styles.css | 8 inst/shiny_examples/app/www/verifyr2.ico |binary man/BinaryFileComparator.Rd | 4 man/Config.Rd | 25 man/RtfFileComparator.Rd | 19 man/TxtFileComparator.Rd | 4 tests/testthat.R | 26 tests/testthat/_snaps |only tests/testthat/test-Config.R | 4 tests/testthat/test-app-app.R |only tests/testthat/test-details_comparison_txt.R | 49 + tests/testthat/test-summary_comparison_rtf.R | 19 tests/testthat/test-summary_comparison_txt.R | 33 tests/testthat/test_configs/config1.json | 4 tests/testthat/test_outputs/rtf/base_corrupted.rtf |only tests/testthat/test_outputs/rtf/changes_five_rows_content_corrupted.rtf |only tests/testthat/test_outputs/txt/additional_spaces_and_tabs.txt |only 30 files changed, 743 insertions(+), 198 deletions(-)
Title: Geometrical Functionality of the 'spatstat' Family
Description: Defines spatial data types and supports geometrical operations
on them. Data types include point patterns, windows (domains),
pixel images, line segment patterns, tessellations and hyperframes.
Capabilities include creation and manipulation of data
(using command line or graphical interaction),
plotting, geometrical operations (rotation, shift, rescale,
affine transformation), convex hull, discretisation and
pixellation, Dirichlet tessellation, Delaunay triangulation,
pairwise distances, nearest-neighbour distances,
distance transform, morphological operations
(erosion, dilation, closing, opening), quadrat counting,
geometrical measurement, geometrical covariance,
colour maps, calculus on spatial domains,
Gaussian blur, level sets of images, transects of images,
intersections between objects, minimum distance matching.
(Excludes spatial data on a network, which are supported by
the package 'spatstat.linnet'.)
Author: Adrian Baddeley [aut, cre, cph] ,
Rolf Turner [aut, cph] ,
Ege Rubak [aut, cph] ,
Warick Brown [ctb],
Tilman Davies [ctb],
Ute Hahn [ctb],
Martin Hazelton [ctb],
Abdollah Jalilian [ctb],
Greg McSwiggan [ctb, cph],
Sebastian Meyer [ctb, cph],
Jens Oeh [...truncated...]
Maintainer: Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>
Diff between spatstat.geom versions 3.7-3 dated 2026-03-23 and 3.8-1 dated 2026-05-23
DESCRIPTION | 18 ++--- MD5 | 82 ++++++++++++------------- NEWS | 80 ++++++++++++++++++++++++ R/as.im.R | 44 ++++++++----- R/distbdry.R | 22 ++---- R/distfun.R | 9 +- R/exactPdt.R | 47 ++++++++++---- R/images.R | 10 ++- R/layered.R | 13 ++- R/nearestsegment.R | 137 +++++++++++++++++++++++++----------------- R/nnfun.R | 11 +-- R/nnmap.R | 4 - R/owin2mask.R | 31 +++++---- R/pixellate.R | 14 ++-- R/plot.im.R | 10 +-- R/plot.ppp.R | 9 +- R/ppp.R | 18 +++-- R/psp2pix.R | 14 ++-- R/randombasic.R | 2 R/util.R | 4 - R/window.R | 31 ++++++--- R/wingeom.R | 92 ++++++++++++++++++---------- inst/doc/packagesizes.txt | 1 inst/info/packagesizes.txt | 1 man/Extract.im.Rd | 8 ++ man/as.im.Rd | 23 +++++++ man/as.mask.Rd | 3 man/as.ppp.Rd | 25 +++++++ man/intensity.Rd | 14 ++-- man/intersect.owin.Rd | 14 +++- man/macros/defns.Rd | 1 man/owin2mask.Rd | 78 ++++++++++++----------- man/pixellate.owin.Rd | 19 +++++ man/pixellate.ppp.Rd | 22 +++++- man/pixellate.psp.Rd | 17 ++++- man/plot.im.Rd | 15 +++- man/plot.ppp.Rd | 18 +++++ man/ppp.Rd | 18 +++-- man/project2set.Rd | 55 ++++++++++++---- man/spatstat.geom-internal.Rd | 64 +++++++++---------- tests/testsGtoJ.R | 1 tests/testsUtoZ.R | 24 ++++++- 42 files changed, 753 insertions(+), 370 deletions(-)
Title: Core Utilities for Developing and Running Spatially Explicit
Discrete Event Models
Description: Provides the core framework for a discrete event system to
implement a complete data-to-decisions, reproducible workflow.
The core components facilitate the development of modular pieces,
and enable the user to include additional functionality by running user-built modules.
Includes conditional scheduling, restart after interruption, packaging of
reusable modules, tools for developing arbitrary automated workflows,
automated interweaving of modules of different temporal resolution,
and tools for visualizing and understanding the within-project dependencies.
Author: Alex M Chubaty [aut] ,
Eliot J B McIntire [aut, cre] ,
Yong Luo [ctb],
Steve Cumming [ctb],
Ceres Barros [ctb] ,
His Majesty the King in Right of Canada, as represented by the Minister
of Natural Resources Canada [cph]
Maintainer: Eliot J B McIntire <eliot.mcintire@canada.ca>
Diff between SpaDES.core versions 3.1.0 dated 2026-05-19 and 3.1.2 dated 2026-05-23
DESCRIPTION | 14 +--- MD5 | 27 ++++---- NEWS.md | 35 ++++++++++ R/module-define.R | 2 inst/doc/i-introduction.html | 2 inst/doc/ii-modules.html | 2 inst/doc/iii-cache.R | 31 +-------- inst/doc/iii-cache.Rmd | 41 ++---------- inst/doc/iii-cache.html | 43 +++---------- inst/doc/iv-advanced.html | 2 inst/doc/v-automated-testing.html | 2 inst/sampleModules/randomLandscapes/randomLandscapes.R | 55 +++++++++++------ tests/testthat/setup.R |only tests/testthat/test-module-deps-methods.R | 7 ++ vignettes/iii-cache.Rmd | 41 ++---------- 15 files changed, 139 insertions(+), 165 deletions(-)
Title: Series System Distributions from Dynamic Failure Rate Components
Description: Compose multiple dynamic failure rate distributions into
series system distributions where the system hazard equals the sum
of component hazards. Supports hazard, survival, cumulative
distribution function, density, sampling, and maximum likelihood
estimation fitting via the dfr_dist() class from 'flexhaz'. Series
distributions implement the 'dist.structure' protocol so structural
queries (phi, min_paths, min_cuts, system_signature, structural
importance, reliability, dual) and the importance measures from
'dist.structure' work directly on serieshaz objects. Methods for
series system reliability follow Barlow and Proschan (1975,
ISBN:0898713692).
Author: Alexander Towell [aut, cre]
Maintainer: Alexander Towell <lex@metafunctor.com>
Diff between serieshaz versions 0.1.1 dated 2026-04-13 and 0.2.0 dated 2026-05-23
serieshaz-0.1.1/serieshaz/man/component.Rd |only serieshaz-0.1.1/serieshaz/man/ncomponents.Rd |only serieshaz-0.2.0/serieshaz/DESCRIPTION | 17 + serieshaz-0.2.0/serieshaz/MD5 | 27 +-- serieshaz-0.2.0/serieshaz/NAMESPACE | 14 + serieshaz-0.2.0/serieshaz/NEWS.md | 28 +++ serieshaz-0.2.0/serieshaz/R/dfr_dist_series.R | 10 + serieshaz-0.2.0/serieshaz/R/generic_functions.R | 89 ---------- serieshaz-0.2.0/serieshaz/R/methods.R | 47 ++++- serieshaz-0.2.0/serieshaz/R/reexports.R | 20 ++ serieshaz-0.2.0/serieshaz/man/component_hazard.Rd | 2 serieshaz-0.2.0/serieshaz/man/param_layout.Rd | 2 serieshaz-0.2.0/serieshaz/man/reexports.Rd | 8 serieshaz-0.2.0/serieshaz/man/sample_components.Rd | 2 serieshaz-0.2.0/serieshaz/man/serieshaz-package.Rd | 2 serieshaz-0.2.0/serieshaz/tests/testthat/test-dist-structure-interop.R |only 16 files changed, 148 insertions(+), 120 deletions(-)
Title: Interactive Graphics for QTL Experiments
Description: Web-based interactive charts (using D3.js) for the analysis of
experimental crosses to identify genetic loci (quantitative trait
loci, QTL) contributing to variation in quantitative traits.
Broman (2015) <doi:10.1534/genetics.114.172742>.
Author: Karl W Broman [aut, cre] ,
Michael Bostock [ctb, cph] ,
jQuery Foundation [cph] ,
jQuery contributors [ctb] ,
jQuery UI contributors [ctb]
Maintainer: Karl W Broman <broman@wisc.edu>
Diff between qtlcharts versions 0.18 dated 2025-05-10 and 0.20 dated 2026-05-23
DESCRIPTION | 10 ++--- MD5 | 48 +++++++++++++------------- NEWS.md | 7 +++ R/qtlcharts.R | 3 - README.md | 1 data/geneExpr.rda |binary data/grav.rda |binary inst/htmlwidgets/iboxplot.yaml | 4 +- inst/htmlwidgets/idotplot.yaml | 4 +- inst/htmlwidgets/iheatmap.yaml | 4 +- inst/htmlwidgets/ipleiotropy.yaml | 4 +- inst/htmlwidgets/iplot.yaml | 4 +- inst/htmlwidgets/iplotCorr.yaml | 4 +- inst/htmlwidgets/iplotCurves.yaml | 4 +- inst/htmlwidgets/iplotMScanone.yaml | 4 +- inst/htmlwidgets/iplotMap.yaml | 4 +- inst/htmlwidgets/iplotRF.yaml | 4 +- inst/htmlwidgets/iplotScanone.yaml | 4 +- inst/htmlwidgets/iplotScantwo.yaml | 4 +- inst/htmlwidgets/itriplot.yaml | 4 +- inst/htmlwidgets/lib/d3panels/LICENSE.md | 2 - inst/htmlwidgets/lib/d3panels/d3panels.min.js | 2 - inst/htmlwidgets/lib/d3panels/package.json | 2 - inst/htmlwidgets/scat2scat.yaml | 4 +- man/qtlcharts-package.Rd | 28 ++++++++++++++- 25 files changed, 95 insertions(+), 64 deletions(-)
Title: Benchmark for Publication Bias Correction Methods
Description: Implements a unified interface for benchmarking meta-analytic
publication bias correction methods through simulation studies (see
Bartoš et al., 2025, <doi:10.48550/arXiv.2510.19489>). It provides
1) predefined data-generating mechanisms from the literature, 2) functions
for running meta-analytic methods on simulated data, 3) pre-simulated
datasets and pre-computed results for reproducible benchmarks, 4) tools for
visualizing and comparing method performance.
Author: Frantisek Bartos [aut, cre] ,
Samuel Pawel [aut] ,
Bjoern S. Siepe [aut] ,
Petr Čala [aut]
Maintainer: Frantisek Bartos <f.bartos96@gmail.com>
Diff between PublicationBiasBenchmark versions 0.2.0 dated 2026-03-16 and 0.2.1 dated 2026-05-23
DESCRIPTION | 11 ++++++----- MD5 | 12 ++++++------ NEWS.md | 4 ++++ R/method-RoBMA.R | 17 +++++++++++------ build/partial.rdb |binary build/vignette.rds |binary man/method.RoBMA.Rd | 6 +++--- 7 files changed, 30 insertions(+), 20 deletions(-)
More information about PublicationBiasBenchmark at CRAN
Permanent link
Title: Access Open Target
Description: Interact seamlessly with Open Target GraphQL endpoint to query and retrieve tidy data tables, facilitating the analysis of gene, disease, drug, and genetic data. For more information about the Open Target API (<https://platform.opentargets.org/api>).
Author: Amir Feizi [aut, cre]
Maintainer: Amir Feizi <afeizi@gmail.com>
Diff between otargen versions 2.0.0 dated 2025-07-15 and 2.0.1 dated 2026-05-23
DESCRIPTION | 9 - MD5 | 43 +++---- NEWS.md | 19 +++ R/chemblQuery.R | 12 -- R/clinvarQuery.R | 5 R/geneBurdenQuery.R | 3 R/geneOntologyQuery.R | 2 R/indicationsQuery.R | 8 - R/interactionsQuery.R | 3 R/knownDrugsChemblQuery.R | 72 +++--------- R/knownDrugsGeneQuery.R | 60 ++++------ R/orphanetQuery.R | 3 README.md | 163 +++++++++++++++++----------- inst |only man/knownDrugsChemblQuery.Rd | 20 +-- man/knownDrugsGeneQuery.Rd | 20 +-- tests/testthat/test_chemblQuery.R | 7 - tests/testthat/test_clinVarQuery.R | 2 tests/testthat/test_geneOntologyQuery.R | 2 tests/testthat/test_interactionsQuery.R | 2 tests/testthat/test_knownDrugsChemblQuery.R | 8 - tests/testthat/test_knownDrugsGeneQuery.R | 5 tests/testthat/test_orphanetQuery.R | 2 23 files changed, 237 insertions(+), 233 deletions(-)
Title: Work with Microsoft Access Files
Description: Work with Microsoft Access '.mdb' and '.accdb' files using the
open source 'MDB Tools' library <https://github.com/mdbtools/mdbtools/>.
The library is compiled and bundled with the package, so no external
installation is required. Provides high-level helpers for reading tables,
exporting to CSV or JSON, inspecting table definitions, and running SQL queries.
Also exposes a full read-only 'DBI' interface for use with standard
database workflows.
Author: Kiernan Nicholls [aut, cre, cph] ,
Bruno Tremblay [ctb]
Maintainer: Kiernan Nicholls <k5cents@gmail.com>
Diff between mdbr versions 0.2.1 dated 2024-03-12 and 0.3.0 dated 2026-05-23
DESCRIPTION | 44 ++++++++++------- MD5 | 108 +++++++++++++++++++++++++++++++++++-------- NAMESPACE | 39 ++++++++++++++- NEWS.md | 31 ++++++++++++ R/advanced.R |only R/dbi.R |only R/example.R | 3 + R/export.R | 64 +++++++++++++++---------- R/native.R |only R/read.R | 58 +++++++++++++---------- R/schema.R | 47 ------------------ R/tables.R | 108 ++++++++++++++++++++++++++++++++++++++++--- R/utils.R | 30 +---------- README.md | 103 +++++++++++++++++++---------------------- cleanup |only cleanup.win |only configure |only configure.win |only man/export_mdb.Rd | 10 +-- man/mdb.Rd |only man/mdb_array.Rd |only man/mdb_count.Rd |only man/mdb_example.Rd | 6 ++ man/mdb_export.Rd |only man/mdb_header.Rd |only man/mdb_hexdump.Rd |only man/mdb_import.Rd |only man/mdb_json.Rd |only man/mdb_prop.Rd |only man/mdb_queries.Rd |only man/mdb_schema.Rd | 77 ++++++++++++++++++++++++++---- man/mdb_sql.Rd |only man/mdb_tables.Rd | 28 +++++++++-- man/mdb_ver.Rd |only man/print.mdblist.Rd |only man/read_mdb.Rd | 20 ++++--- src |only tests/testthat/mdbtestdata |only tests/testthat/test-dbi.R |only tests/testthat/test-export.R | 8 +-- tests/testthat/test-native.R |only tests/testthat/test-read.R | 24 +++------ tests/testthat/test-schema.R | 18 +++---- tests/testthat/test-tables.R | 2 44 files changed, 549 insertions(+), 279 deletions(-)
Title: Local Polynomial Density Estimation and Inference
Description: Implements local polynomial distribution and density methods for point estimation, inference and bandwidth selection, documented in Cattaneo, Jansson and Ma (2020) <doi:10.1080/01621459.2019.1635480>, Cattaneo, Jansson and Ma (2022) <doi:10.18637/jss.v101.i02>, and Cattaneo, Jansson and Ma (2024) <doi:10.1016/j.jeconom.2021.01.006>. lpdensity() constructs local polynomial distribution and density estimators with robust bias-corrected inference, and lpbwdensity() implements data-driven bandwidth selection.
Author: Matias D. Cattaneo [aut, cre],
Michael Jansson [aut],
Xinwei Ma [aut]
Maintainer: Matias D. Cattaneo <matias.d.cattaneo@gmail.com>
Diff between lpdensity versions 3.0 dated 2026-05-21 and 3.0.1 dated 2026-05-23
DESCRIPTION | 8 +++---- MD5 | 4 +-- tests/testthat/test-numerical-baseline.R | 32 +++++++++++++++++++++++++++---- 3 files changed, 34 insertions(+), 10 deletions(-)
Title: Access the Intergovernmental Organizations Database
Description: Tools for searching, extracting and recoding information from
the Intergovernmental Organizations ('IGO') Database (v3), distributed
by the Correlates of War Project <https://correlatesofwar.org/>. See
also Pevehouse, J. C. et al. (2020) <doi:10.1177/0022343319881175>.
Author: Diego Hernangomez [aut, cre, cph] ,
The Correlates of War Project [cph]
Maintainer: Diego Hernangomez <diego.hernangomezherrero@gmail.com>
Diff between igoR versions 1.0.1 dated 2026-03-13 and 1.0.2 dated 2026-05-23
DESCRIPTION | 19 +- MD5 | 110 ++++++------- NAMESPACE | 24 +- NEWS.md | 57 +++--- R/data.R | 106 ++++++------ R/igoR-package.R | 12 - R/igo_dyadic.R | 108 ++++++------- R/igo_members.R | 69 +++----- R/igo_recode.R | 26 +-- R/igo_search.R | 57 +++--- R/igo_search_states.R | 34 ++-- R/igo_state_membership.R | 72 +++----- R/sysdata.rda |binary README.md | 62 +++---- build/partial.rdb |binary build/vignette.rds |binary data/igo_year_format3.rda |binary data/state_year_format3.rda |binary data/states2016.rda |binary inst/CITATION | 74 ++++---- inst/COPYRIGHTS | 22 +- inst/REFERENCES.bib | 96 +++++------ inst/WORDLIST | 139 ++++++++-------- inst/doc/igoR.R | 37 ++-- inst/doc/igoR.html | 153 ++++++++---------- inst/doc/igoR.qmd | 95 ++++------- inst/doc/mapping.html | 216 ++++++++++++-------------- inst/doc/mapping.qmd | 98 +++++------ inst/schemaorg.json | 10 - man/igoR-package.Rd | 67 ++++---- man/igo_dyadic.Rd | 182 ++++++++++----------- man/igo_members.Rd | 140 ++++++++-------- man/igo_recode.Rd | 120 ++++++-------- man/igo_search.Rd | 154 +++++++++--------- man/igo_search_states.Rd | 88 +++++----- man/igo_state_membership.Rd | 132 +++++++-------- man/igo_year_format3.Rd | 184 +++++++++++----------- man/state_year_format3.Rd | 140 ++++++++-------- man/states2016.Rd | 136 ++++++++-------- tests/testthat/_snaps/igo_dyadic.md | 30 +-- tests/testthat/_snaps/igo_members.md | 14 - tests/testthat/_snaps/igo_search.md | 2 tests/testthat/_snaps/igo_search_states.md | 6 tests/testthat/_snaps/igo_state_membership.md | 20 +- tests/testthat/test-igo_dyadic.R | 100 ++++++------ tests/testthat/test-igo_members.R | 159 ++++++++----------- tests/testthat/test-igo_recode.R | 58 +++--- tests/testthat/test-igo_search.R | 14 - tests/testthat/test-igo_search_states.R | 44 ++--- tests/testthat/test-igo_state_membership.R | 183 +++++++++------------- vignettes/REFERENCES.bib | 96 +++++------ vignettes/fig-AustShared-1.png |binary vignettes/fig-NAShared-1.png |binary vignettes/fig-UNMaps-1.png |binary vignettes/igoR.qmd | 95 ++++------- vignettes/mapping.qmd | 98 +++++------ 56 files changed, 1927 insertions(+), 2031 deletions(-)
Title: Utilities to Weave Hydrologic Fabrics
Description: A collection of utilities that support creation of network attributes for hydrologic networks. Methods and algorithms implemented are documented in Moore et al. (2019) <doi:10.3133/ofr20191096>), Cormen and Leiserson (2022) <ISBN:9780262046305> and Verdin and Verdin (1999) <doi:10.1016/S0022-1694(99)00011-6>.
Author: David Blodgett [aut, cre] ,
Andrew Psoras [ctb]
Maintainer: David Blodgett <dblodgett@usgs.gov>
Diff between hydroloom versions 1.1.2 dated 2026-02-20 and 1.2.0 dated 2026-05-23
hydroloom-1.1.2/hydroloom/tests/testthat/data/reweight_test.rds |only hydroloom-1.2.0/hydroloom/DESCRIPTION | 18 hydroloom-1.2.0/hydroloom/MD5 | 238 +- hydroloom-1.2.0/hydroloom/NAMESPACE | 61 hydroloom-1.2.0/hydroloom/NEWS.md | 63 hydroloom-1.2.0/hydroloom/R/00_hydroloom.R | 459 ++-- hydroloom-1.2.0/hydroloom/R/accumulate_downstream.R | 580 +++-- hydroloom-1.2.0/hydroloom/R/add_divergence.R | 954 ++++----- hydroloom-1.2.0/hydroloom/R/add_levelpaths.R | 697 +++--- hydroloom-1.2.0/hydroloom/R/add_measures.R | 230 +- hydroloom-1.2.0/hydroloom/R/add_pathlength.R | 143 - hydroloom-1.2.0/hydroloom/R/add_pfafstetter.R | 466 ++-- hydroloom-1.2.0/hydroloom/R/add_streamorder-level.R | 573 +++-- hydroloom-1.2.0/hydroloom/R/add_toids.R | 288 +- hydroloom-1.2.0/hydroloom/R/align_names.R | 278 +- hydroloom-1.2.0/hydroloom/R/check_hy_graph.R | 453 ++-- hydroloom-1.2.0/hydroloom/R/check_valid.R |only hydroloom-1.2.0/hydroloom/R/disambiguate.R | 234 +- hydroloom-1.2.0/hydroloom/R/dissolve_polygons.R |only hydroloom-1.2.0/hydroloom/R/get_bridges.R | 424 ++-- hydroloom-1.2.0/hydroloom/R/get_hydro_location.R | 156 - 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Title: Estimate Gaps Under an Intervention
Description: Provides functions to estimate the disparities across categories (e.g. Black and white) that persists if a treatment variable (e.g. college) is equalized. Makes estimates by treatment modeling, outcome modeling, and doubly-robust augmented inverse probability weighting estimation, with standard errors calculated by a nonparametric bootstrap. Cross-fitting is supported. Survey weights are supported for point estimation but not for standard error estimation; those applying this package with complex survey samples should consult the data distributor to select an appropriate approach for standard error construction, which may involve calling the functions repeatedly for many sets of replicate weights provided by the data distributor. The methods in this package are described in the accompanying paper: <doi:10.1177/00491241211055769>.
Author: Ian Lundberg [aut, cre]
Maintainer: Ian Lundberg <ianlundberg@ucla.edu>
This is a re-admission after prior archival of version 1.0.2 dated 2021-10-11
Diff between gapclosing versions 1.0.2 dated 2021-10-11 and 1.0.3 dated 2026-05-23
DESCRIPTION | 16 MD5 | 18 NAMESPACE | 2 R/disparityplot.R | 12 R/gapclosing.R | 6 build/vignette.rds |binary inst/CITATION | 6 inst/WORDLIST | 13 inst/doc/gapclosing.R | 24 - inst/doc/gapclosing.html | 1004 +++++++++++++++++++++++++++++++++++------------ 10 files changed, 805 insertions(+), 296 deletions(-)
Title: Fuzzy C-Means for Fuzzy Data
Description: Implements a fuzzy clustering approach for ordinal Likert-type data
using triangular fuzzy numbers (TFNs). The package extends the classical
fuzzy C-means algorithm to better handle uncertainty in ordinal scales and
includes automatic selection of the number of clusters using the Xie-Beni
validity index. References: Coppi, R., D'Urso, P., and Giordani, P. (2012),
"Fuzzy and possibilistic clustering for fuzzy data", <doi:10.1016/j.csda.2010.09.013>. Xie, X. L. and Beni, G.
(1991), "A validity measure for fuzzy clustering", <doi:10.1109/34.85677>.
Author: Jose Ortigas [aut, cre]
Maintainer: Jose Ortigas <jose.ortigas@unmsm.edu.pe>
Diff between fcmfd versions 0.1.0 dated 2026-05-05 and 0.1.1 dated 2026-05-23
DESCRIPTION | 10 +++++----- MD5 | 6 +++--- R/fcmTFN.R | 24 +++++++++--------------- man/fcmTFN.Rd | 24 +++++++++--------------- 4 files changed, 26 insertions(+), 38 deletions(-)
Title: Data Science Infrastructure for Global Health
Description: Supports global health data analysis, including a
publication-ready 'ggplot2' theme, a 'flextable' defaults helper,
a thin pie chart wrapper, built-in regional country-code datasets
with a WHO region lookup helper, a geometric mean function for
indicator aggregation, and convenience clients for the World
Health Organization Global Health Observatory (GHO) OData API
<https://ghoapi.azureedge.net/api/> and the United Nations
Sustainable Development Goals (SDG) API
<https://unstats.un.org/SDGAPI/swagger/>.
Author: Shanlong Ding [aut, cre]
Maintainer: Shanlong Ding <dings@who.int>
Diff between DSIR versions 0.7.0 dated 2026-05-21 and 0.7.1 dated 2026-05-23
DESCRIPTION | 10 +++++----- MD5 | 8 ++++---- NEWS.md | 4 ++++ inst/doc/DSIR.html | 46 +++++++++++++++++++++++----------------------- man/DSIR-package.Rd | 4 ++-- 5 files changed, 38 insertions(+), 34 deletions(-)
Title: Optimal Pairing and Matching via Linear Assignment
Description: Solves optimal pairing and matching problems using linear assignment
algorithms. Provides implementations of the Hungarian method (Kuhn 1955)
<doi:10.1002/nav.3800020109>, Jonker-Volgenant shortest path algorithm
(Jonker and Volgenant 1987) <doi:10.1007/BF02278710>, Auction algorithm
(Bertsekas 1988) <doi:10.1007/BF02186476>, cost-scaling
(Goldberg and Kennedy 1995) <doi:10.1007/BF01585996>, scaling algorithms
(Gabow and Tarjan 1989) <doi:10.1137/0218069>, push-relabel (Goldberg and
Tarjan 1988) <doi:10.1145/48014.61051>, and Sinkhorn entropy-regularized
transport (Cuturi 2013) <doi:10.48550/arxiv.1306.0895>. Designed for
matching plots, sites, samples, or any pairwise optimization problem.
Supports rectangular matrices, forbidden assignments, data frame inputs,
batch solving, k-best solutions, and pixel-level image morphing for
visualization. Includes automatic preprocessing with variable health
checks, multiple scaling methods (standardized, [...truncated...]
Author: Gilles Colling [aut, cre, cph]
Maintainer: Gilles Colling <gilles.colling051@gmail.com>
Diff between couplr versions 1.4.0 dated 2026-05-18 and 1.4.1 dated 2026-05-23
DESCRIPTION | 6 MD5 | 34 ++--- NEWS.md | 40 ++++++ R/lap_solve.R | 6 R/matching_constraints.R | 11 + R/matching_core.R | 142 +++++++++++++--------- README.md | 2 inst/doc/algorithms.Rmd | 2 inst/doc/algorithms.html | 14 +- inst/doc/comparison.html | 4 inst/doc/getting-started.html | 22 ++- inst/doc/matching-workflows.html | 80 ++++++------ inst/doc/pixel-morphing.html | 4 inst/doc/troubleshooting.html | 110 +++++++++++------ src/solvers/jv_core.cpp | 15 +- tests/testthat/test-lap-solve-extended-coverage.R | 4 tests/testthat/test-matching-core-coverage-4.R | 4 vignettes/algorithms.Rmd | 2 18 files changed, 320 insertions(+), 182 deletions(-)
Title: Integrating Multi-Source Block-Wise Missing Data in Model
Selection
Description: Model selection method with multiple block-wise imputation for block-wise missing data; see Xue, F., and Qu, A. (2021) <doi:10.1080/01621459.2020.1751176>.
Author: Fei Xue [aut, cre],
Annie Qu [aut]
Maintainer: Fei Xue <feixue@purdue.edu>
This is a re-admission after prior archival of version 0.1.0 dated 2023-09-12
Diff between BlockMissingData versions 0.1.0 dated 2023-09-12 and 0.1.1 dated 2026-05-23
DESCRIPTION | 9 ++++----- MD5 | 8 ++++---- NAMESPACE | 1 - R/MBI.R | 2 -- R/imputeglm.predict.R | 1 - 5 files changed, 8 insertions(+), 13 deletions(-)
More information about BlockMissingData at CRAN
Permanent link
Title: Ensemble Platform for Species Distribution Modeling
Description: Functions for species distribution modeling, calibration and evaluation,
ensemble of models, ensemble forecasting and visualization. The package permits to run
consistently up to 10 single models on a presence/absences (resp presences/pseudo-absences)
dataset and to combine them in ensemble models and ensemble projections. Some bench of other
evaluation and visualisation tools are also available within the package.
Author: Maya Gueguen [aut, cre],
Helene Blancheteau [aut],
Remi Lemaire-Patin [aut],
Wilfried Thuiller [aut]
Maintainer: Maya Gueguen <maya.gueguen@univ-grenoble-alpes.fr>
Diff between biomod2 versions 4.3-4-5 dated 2026-01-30 and 4.3-4-6 dated 2026-05-23
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Title: Analysis of Multivariate Event Times
Description: Implementation of various statistical models for multivariate
event history data <doi:10.1007/s10985-013-9244-x>. Including multivariate
cumulative incidence models <doi:10.1002/sim.6016>, and bivariate random
effects probit models (Liability models) <doi:10.1016/j.csda.2015.01.014>.
Modern methods for survival analysis, including regression modelling (Cox, Fine-Gray,
Ghosh-Lin, Binomial regression) with fast computation of influence functions.
Author: Klaus K. Holst [aut, cre],
Thomas Scheike [aut]
Maintainer: Klaus K. Holst <klaus@holst.it>
Diff between mets versions 1.3.9 dated 2026-01-11 and 1.3.10 dated 2026-05-23
mets-1.3.10/mets/DESCRIPTION | 17 mets-1.3.10/mets/MD5 | 525 +- mets-1.3.10/mets/NAMESPACE | 243 mets-1.3.10/mets/NEWS.md | 23 mets-1.3.10/mets/R/Event.Split.R | 125 mets-1.3.10/mets/R/RcppExports.R | 8 mets-1.3.10/mets/R/WA-estimands.R | 230 mets-1.3.10/mets/R/bicomprisk.R | 113 mets-1.3.10/mets/R/binomial.regression.R | 1217 ----- mets-1.3.10/mets/R/binomial.twostage.R | 424 - mets-1.3.10/mets/R/binregTSR.R | 125 mets-1.3.10/mets/R/biprobit.R | 13 mets-1.3.10/mets/R/blocksample.R | 2 mets-1.3.10/mets/R/bptwin.R | 2 mets-1.3.10/mets/R/casewise.R | 153 mets-1.3.10/mets/R/cifreg.R | 492 -- mets-1.3.10/mets/R/claytonakes.R | 7 mets-1.3.10/mets/R/clusterindex-reshape.R | 75 mets-1.3.10/mets/R/cor.R | 100 mets-1.3.10/mets/R/discrete-survival-haplo.R | 153 mets-1.3.10/mets/R/divide.conquer.R | 63 mets-1.3.10/mets/R/drop.strata.R | 17 mets-1.3.10/mets/R/dutils.R | 18 mets-1.3.10/mets/R/event.r | 5 mets-1.3.10/mets/R/fastcluster.R | 7 mets-1.3.10/mets/R/fastreshape.R | 6 mets-1.3.10/mets/R/force.same.cens.R | 69 mets-1.3.10/mets/R/glm-utils.R | 21 mets-1.3.10/mets/R/gof-phreg.R | 299 - mets-1.3.10/mets/R/interval-cumoddsreg.r | 128 mets-1.3.10/mets/R/ipw.R | 6 mets-1.3.10/mets/R/jumptimes.R | 15 mets-1.3.10/mets/R/lifecourse.R | 8 mets-1.3.10/mets/R/mediator-survival.R | 4 mets-1.3.10/mets/R/mets-package.R | 48 mets-1.3.10/mets/R/multinomialreg.R |only mets-1.3.10/mets/R/npc.R | 76 mets-1.3.10/mets/R/phreg.R | 2431 ++++------ mets-1.3.10/mets/R/phreg_rct.R | 137 mets-1.3.10/mets/R/phreg_weibull.R | 4 mets-1.3.10/mets/R/plotcr.R | 7 mets-1.3.10/mets/R/pmvn.R | 2 mets-1.3.10/mets/R/procformula.R | 5 mets-1.3.10/mets/R/prop-odds.R | 2 mets-1.3.10/mets/R/ratio.regression.R | 189 mets-1.3.10/mets/R/recreg.R | 557 +- mets-1.3.10/mets/R/recurrent.marginal.R | 1670 ++++-- mets-1.3.10/mets/R/restricted.mean.R | 219 mets-1.3.10/mets/R/score-mean-tests.R |only mets-1.3.10/mets/R/sim-docs.R |only mets-1.3.10/mets/R/sim-nordic-twin.R | 30 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Title: Provider-Agnostic OAuth Authentication for 'shiny' Applications
Description: Provides a simple, configurable, provider-agnostic 'OAuth 2.0' and
'OpenID Connect' (OIDC) authentication framework for 'shiny' applications
using 'S7' classes. Defines providers, clients, and tokens, as well
as various supporting functions and a 'shiny' module. Features include
cross-site request forgery (CSRF) protection, state encryption,
'Proof Key for Code Exchange' (PKCE) handling, validation of OIDC identity
tokens (nonces, signatures, claims), automatic user info retrieval, asynchronous
flows, and hooks for audit logging.
Author: Luka Koning [aut, cre, cph]
Maintainer: Luka Koning <koningluka@gmail.com>
Diff between shinyOAuth versions 0.4.0 dated 2026-02-14 and 0.5.0 dated 2026-05-23
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shinyOAuth-0.5.0/shinyOAuth/R/utils__shiny_dispatch.R |only shinyOAuth-0.5.0/shinyOAuth/R/utils__shiny_otel.R |only shinyOAuth-0.5.0/shinyOAuth/R/utils__shiny_request_uri.R |only shinyOAuth-0.5.0/shinyOAuth/R/utils__state.R | 821 +- shinyOAuth-0.5.0/shinyOAuth/R/utils__url_helpers.R |only shinyOAuth-0.5.0/shinyOAuth/R/utils__validators.R |only shinyOAuth-0.5.0/shinyOAuth/R/zzz.R | 17 shinyOAuth-0.5.0/shinyOAuth/README.md | 43 shinyOAuth-0.5.0/shinyOAuth/build/vignette.rds |binary shinyOAuth-0.5.0/shinyOAuth/inst/doc/audit-logging.Rmd | 262 shinyOAuth-0.5.0/shinyOAuth/inst/doc/audit-logging.html | 440 - shinyOAuth-0.5.0/shinyOAuth/inst/doc/authentication-flow.Rmd | 523 - shinyOAuth-0.5.0/shinyOAuth/inst/doc/authentication-flow.html | 670 + shinyOAuth-0.5.0/shinyOAuth/inst/doc/example-spotify.R | 45 shinyOAuth-0.5.0/shinyOAuth/inst/doc/example-spotify.Rmd | 53 shinyOAuth-0.5.0/shinyOAuth/inst/doc/example-spotify.html | 2043 ++--- shinyOAuth-0.5.0/shinyOAuth/inst/doc/opentelemetry.Rmd 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Title: Univariate GARCH Models
Description: Multiple flavors of the Generalized Autoregressive Conditional Heteroskedasticity (GARCH) model with a large choice of conditional distributions. Methods for specification, estimation, prediction, filtering, simulation, statistical testing and more. Represents a partial re-write and re-think of 'rugarch', making use of automatic differentiation for estimation.
Author: Alexios Galanos [aut, cre, cph]
Maintainer: Alexios Galanos <alexios@4dscape.com>
Diff between tsgarch versions 1.0.3 dated 2024-10-11 and 1.0.4 dated 2026-05-23
DESCRIPTION | 18 ++--- MD5 | 50 +++++++------- NAMESPACE | 1 NEWS.md | 24 ++++++ R/estimate.R | 27 +++++++ R/initialization.R | 140 ++++++++++++++++++++++++++++++++++++++++ R/methods.R | 37 ++++++++++ R/multispec.R | 3 R/specification.R | 13 ++- R/tsgarch-package.R | 2 build/partial.rdb |binary build/vignette.rds |binary inst/doc/benchmark.html | 46 ++++++++----- inst/doc/demonstration.R | 4 - inst/doc/demonstration.Rmd | 21 +++--- inst/doc/demonstration.html | 80 ++++++++++++---------- inst/doc/garch_models.pdf |binary man/figures |only man/garch_modelspec.Rd | 8 +- man/reexports.Rd | 4 - man/tsgarch-package.Rd | 8 ++ src/TMB/distfun.h | 8 -- src/TMB/realgarch.hpp.cpp |only src/TMB/tsgarch_TMBExports.cpp | 11 ++- tests/longtests/test-backtest.R | 8 +- tests/testthat/helper-global.R | 38 +++++----- vignettes/demonstration.Rmd | 21 +++--- 27 files changed, 420 insertions(+), 152 deletions(-)
Title: SQLite Interface for R
Description: Embeds the SQLite database engine in R and provides an
interface compliant with the DBI package. The source for the SQLite
engine and for various extensions is included.
System libraries will never be consulted because this package relies
on static linking for the plugins it includes; this also ensures a
consistent experience across all installations.
Author: Kirill Mueller [aut, cre] ,
Hadley Wickham [aut],
David A. James [aut],
Seth Falcon [aut],
D. Richard Hipp [ctb] ,
Dan Kennedy [ctb] ,
Joe Mistachkin [ctb] ,
SQLite Authors [ctb] ,
Liam Healy [ctb] ,
R Consortium [fnd],
RStudio [cph]
Maintainer: Kirill Mueller <kirill@cynkra.com>
Diff between RSQLite versions 3.52.0 dated 2026-05-10 and 3.53.1 dated 2026-05-23
DESCRIPTION | 8 MD5 | 14 NEWS.md | 7 src/vendor/extensions/csv.c | 17 src/vendor/extensions/regexp.c | 19 src/vendor/extensions/series.c | 8 src/vendor/sqlite3/sqlite3.c | 3311 +++++++++++++++++++++++++++++------------ src/vendor/sqlite3/sqlite3.h | 364 +++- 8 files changed, 2692 insertions(+), 1056 deletions(-)
Title: Easy to Configure an Isolated 'Python' Environment
Description: Aims to create a single isolated 'Miniconda'
and 'Python' environment for reproducible pipeline scripts.
The package provides utilities to run system command within the 'conda'
environment, making it easy to install, launch, manage, and stop
'Jupyter-lab'.
Author: Zhengjia Wang [cph, aut, cre]
Maintainer: Zhengjia Wang <dipterix.wang@gmail.com>
Diff between rpymat versions 0.1.8 dated 2025-07-22 and 0.1.9 dated 2026-05-23
DESCRIPTION | 8 - MD5 | 44 +++--- NAMESPACE | 2 NEWS.md | 8 + R/aaa.R | 46 +++---- R/background.R | 12 - R/cmd.R | 90 +++++++------- R/download.R | 8 - R/exec_py.R | 48 +++---- R/file_choose.R | 14 +- R/fixes.R |only R/install.R | 255 ++++++++++++++++++++-------------------- R/jupyter.R | 81 ++++++------ R/ported.R | 6 R/reexports.R | 50 +++---- R/rstudioapi.R | 35 ++--- R/utils-readxlsx.R | 30 ++-- R/utils.R | 6 R/zzz.R | 10 - inst/matlab-python-versions.txt | 2 man/conda-env.Rd | 3 man/fix_omp_conflict.Rd |only man/reexports.Rd | 2 tests/spelling.R | 2 24 files changed, 387 insertions(+), 375 deletions(-)
Title: Read 'Blackrock-Microsystems' Files ('NEV', 'NSx')
Description: Loads 'Blackrock' <https://blackrockneurotech.com> neural signal
data files into the memory, provides utility tools to extract the data into
common formats such as plain-text 'tsv' and 'HDF5'.
Author: Zhengjia Wang [aut, cre]
Maintainer: Zhengjia Wang <dipterix.wang@gmail.com>
Diff between readNSx versions 0.0.6 dated 2025-10-24 and 0.0.7 dated 2026-05-23
DESCRIPTION | 10 MD5 | 48 +-- NEWS.md | 6 R/bci2000.R | 22 - R/blackrock.R | 281 ++++++++++++++++++--- R/cpp11.R | 12 R/formats.R | 16 - R/hdf5-alternative.R | 187 +++++++++++--- R/hdf5.R | 470 +++++++++++++++++++++++++++--------- R/nev.R | 56 ++-- R/nsx.R | 369 +++++++++++++++++++++++++--- R/parsers.R | 22 - R/specifications.R | 6 R/utils.R | 104 ++++--- R/validators.R | 6 build/vignette.rds |binary man/compare_nsx_methods.Rd |only src/common.h | 73 +++++ src/cpp11.cpp | 24 + src/readBCI.h | 88 +++--- src/readNSxDataPacket.cpp | 230 +++++++++++++++++ tests/spelling.R | 2 tests/testthat/test-bci2000.R |only tests/testthat/test-fileimport.R | 18 - tests/testthat/test-h5-allocation.R |only tests/testthat/test-nsx-local.R |only tests/testthat/test-rawToSEXP.R | 12 27 files changed, 1632 insertions(+), 430 deletions(-)
Title: Estimation and Inference for Boundary Discontinuity Designs
Description: Provides pointwise and uniform estimation and inference methods for boundary discontinuity (BD) designs,
a causal inference design that generalizes univariate regression discontinuity (RD) designs to settings with bivariate scores.
Implements local polynomial methods for location-based and distance-based analyses, including sharp and fuzzy designs,
data-driven bandwidth selection, pointwise confidence intervals, and uniform confidence bands. Methodology is developed in
Cattaneo, Titiunik, and Yu (2026) <doi:10.48550/arXiv.2505.05670> for location-based methods and
Cattaneo, Titiunik, and Yu (2026) <doi:10.48550/arXiv.2510.26051> for distance-based methods.
For an overview and empirical guidance, see Cattaneo, Titiunik, and Yu (2026) <doi:10.48550/arXiv.2511.06474>.
The companion software article is Cattaneo, Titiunik, and Yu (2025) <doi:10.48550/arXiv.2505.07989>.
Author: Matias D. Cattaneo [aut, cre],
Rocio Titiunik [aut],
Ruiqi Rae Yu [aut]
Maintainer: Matias D. Cattaneo <matias.d.cattaneo@gmail.com>
Diff between rd2d versions 0.1.0 dated 2026-05-14 and 0.2.0 dated 2026-05-23
DESCRIPTION | 8 - MD5 | 50 ++++----- NEWS.md | 5 R/rd2d-package.R | 2 R/rd2d.R | 108 ++++++++++++-------- R/rd2d_distance.R | 128 +++++++++++++++-------- R/rd2d_distance_fn.R | 155 +++++++++++++++++++---------- R/rd2d_fn.R | 82 ++++++++++----- R/rdbw2d.R | 61 ++++++----- R/rdbw2d_distance.R | 15 +- man/print.rd2d.Rd | 2 man/print.rd2d.distance.Rd | 2 man/print.rdbw2d.Rd | 2 man/print.rdbw2d.distance.Rd | 2 man/rd2d-package.Rd | 2 man/rd2d.Rd | 14 -- man/rd2d.distance.Rd | 7 - man/rdbw2d.Rd | 2 man/rdbw2d.distance.Rd | 2 man/summary.rd2d.Rd | 15 +- man/summary.rd2d.distance.Rd | 12 +- man/summary.rdbw2d.Rd | 2 man/summary.rdbw2d.distance.Rd | 2 tests/testthat/test-distance-methods.R | 47 +++++--- tests/testthat/test-numerical-regression.R | 14 -- tests/testthat/test-package.R | 74 ++++++++----- 26 files changed, 497 insertions(+), 318 deletions(-)
Title: Signal and Image Processing Toolbox for Analyzing Intracranial
Electroencephalography Data
Description: Implemented fast and memory-efficient Notch-filter,
Welch-periodogram, discrete wavelet spectrogram for minutes of
high-resolution signals, fast 3D convolution, image registration,
3D mesh manipulation; providing fundamental toolbox for intracranial
Electroencephalography (iEEG) pipelines.
Documentation and examples about 'RAVE' project are provided at
<https://rave.wiki>, and the paper by John F. Magnotti,
Zhengjia Wang, Michael S. Beauchamp (2020)
<doi:10.1016/j.neuroimage.2020.117341>; see 'citation("ravetools")' for
details.
Author: Zhengjia Wang [aut, cre],
John Magnotti [aut],
Michael Beauchamp [aut],
Trustees of the University of Pennsylvania [cph] ,
Karim Rahim [cph, ctb] ,
Thomas Possidente [cph, ctb] ,
Michael Prerau [cph, ctb] ,
Marcus Geelnard [ctb, cph] ,
Stefan Schlage [...truncated...]
Maintainer: Zhengjia Wang <dipterix.wang@gmail.com>
Diff between ravetools versions 0.2.4 dated 2025-09-10 and 0.2.5 dated 2026-05-23
DESCRIPTION | 11 MD5 | 196 ++++++----- NAMESPACE | 16 NEWS.md | 17 + R/RcppExports.R | 16 R/aaa.R | 38 +- R/band-pass.R | 40 +- R/baseline.R | 69 ++-- R/carla.R |only R/class-Matrix4.R | 64 +-- R/class-Quaternion.R | 18 - R/class-Vector3.R | 26 - R/collapse.R | 26 - R/convolve.R | 26 - R/crp.R |only R/curve-catmull.R |only R/detrend.R | 14 R/dijkstras-path.R | 44 +- R/fast_cov.R | 16 R/fast_quantile.R | 4 R/fftw.R |only R/filter-butter.R | 10 R/filter-cutoff.R | 4 R/filter-decimate.R | 14 R/filter-diagnosis.R | 102 +++--- R/filter-fftfilt.R | 14 R/filter-filtfilt.R | 69 ++-- R/filter-fir-design.R | 98 ++++- R/filter-fir.R | 110 ++++-- R/filter-notch.R | 24 - R/filter-utils.R | 34 +- R/filter.R | 111 ++++-- R/find_peaks.R | 8 R/gammatone.R | 30 - R/geometry-plane.R | 69 ++-- R/guess_number.R | 16 R/image-mesh-from-volume.R | 17 - R/image-resample3d.R | 13 R/imaging-fill-surface.R | 39 +- R/imaging-registration.R | 4 R/interpolate.R | 56 +-- R/misc.R | 11 R/multitaper.R | 148 ++++----- R/nmf.R | 16 R/parse_svec.R | 56 +-- R/plot-signals.R | 19 - R/pwelch-diagnosis.R | 80 ++-- R/pwelch.R | 110 +++--- R/rgl.R | 16 R/shift_array.R | 10 R/spike_sorting.R |only R/stimulation_pauses.R | 50 +-- R/vcg.R | 58 +-- R/wavelet-double.R |only R/wavelet-float.R |only R/wavelet.R | 559 ++++++++-------------------------- build |only inst/CITATION | 61 +++ inst/WORDLIST | 4 inst/include/ravetools_RcppExports.h | 43 +- man/baseline_array.Rd | 45 +- man/carla.Rd |only man/catmull_rom_3d.Rd |only man/collapse.Rd | 4 man/crp.Rd |only man/design_filter.Rd | 10 man/design_filter_iir.Rd | 19 - man/dijkstras-path.Rd | 4 man/fftw-internal.Rd |only man/filtfilt.Rd | 15 man/firls.Rd | 9 man/plot.ravetools_crp.Rd |only man/plot.ravetools_curve.Rd |only man/print.ravetools_curve.Rd |only man/project_plane.Rd | 5 man/pwelch.Rd | 2 man/reexports.Rd | 2 man/shift_array.Rd | 2 man/vcg_uniform_remesh.Rd | 2 man/wavelet.Rd | 14 src/RcppExports.cpp | 236 ++++++++------ src/baseline.cpp | 54 ++- src/ffts.cpp | 43 +- src/fftw-wrapper.cpp | 148 ++++++--- src/fftw-wrapper.h | 12 src/glQuaternion.cpp | 23 + src/glQuaternion.h | 2 src/vcgCommon.cpp | 2 tests/spelling.R | 6 tests/testthat.R | 2 tests/testthat/test-baseline.R | 372 ++++++++++++++++------ tests/testthat/test-collapse.R | 148 ++++----- tests/testthat/test-convolve.R | 24 - tests/testthat/test-extra.R | 2 tests/testthat/test-fftw.R | 312 ++++++++++++++---- tests/testthat/test-fftw2D.R | 73 ++++ tests/testthat/test-fftw3D.R | 75 ++++ tests/testthat/test-filter.R | 48 +- tests/testthat/test-fir-design.R |only tests/testthat/test-firls-fast-path.R |only tests/testthat/test-matrix4.R | 86 ++--- tests/testthat/test-pwelch.R | 48 ++ tests/testthat/test-quaternion.R | 41 +- tests/testthat/test-rawToSEXP.R | 28 - tests/testthat/test-resample3D.R | 18 - tests/testthat/test-shiftarray.R | 55 +-- tests/testthat/test-vector3.R | 331 +++++++++++--------- tests/testthat/test-wavelet.R |only 108 files changed, 2922 insertions(+), 2124 deletions(-)
Title: Likelihood Models for Systems with Masked Component Cause of
Failure
Description: Maximum likelihood estimation for series systems where the
component cause of failure is masked. Implements analytical log-likelihood,
score, and Hessian functions for exponential, homogeneous Weibull, and
heterogeneous Weibull component lifetimes under masked cause conditions
(C1, C2, C3). Supports exact, right-censored, left-censored, and
interval-censored observations via composable observation functors.
Provides random data generation, model fitting, and Fisher information
for asymptotic inference. See Lin, Loh, and Bai (1993)
<doi:10.1109/24.257799> and Craiu and Reiser (2006)
<doi:10.1111/j.1541-0420.2005.00498.x>.
Author: Alexander Towell [aut, cre]
Maintainer: Alexander Towell <lex@metafunctor.com>
Diff between maskedcauses versions 0.9.3 dated 2026-03-17 and 0.10.0 dated 2026-05-23
maskedcauses-0.10.0/maskedcauses/DESCRIPTION | 11 maskedcauses-0.10.0/maskedcauses/MD5 | 36 +- maskedcauses-0.10.0/maskedcauses/NAMESPACE | 2 maskedcauses-0.10.0/maskedcauses/NEWS.md | 34 ++ maskedcauses-0.10.0/maskedcauses/R/exp_series.R | 129 +++++++--- maskedcauses-0.10.0/maskedcauses/R/utils.R | 18 + maskedcauses-0.10.0/maskedcauses/R/zzz.R |only maskedcauses-0.10.0/maskedcauses/inst/doc/censoring_comparison.html | 6 maskedcauses-0.10.0/maskedcauses/inst/doc/weibull_series.html | 6 maskedcauses-0.10.0/maskedcauses/man/Exponential-series-system.Rd | 15 - maskedcauses-0.10.0/maskedcauses/man/dexp_series.Rd | 9 maskedcauses-0.10.0/maskedcauses/man/hazard_exp_series.Rd | 8 maskedcauses-0.10.0/maskedcauses/man/integrate_hazard.Rd |only maskedcauses-0.10.0/maskedcauses/man/mean.exp_series.Rd | 27 +- maskedcauses-0.10.0/maskedcauses/man/pexp_series.Rd | 7 maskedcauses-0.10.0/maskedcauses/man/qexp_series.Rd | 7 maskedcauses-0.10.0/maskedcauses/man/rexp_series.Rd | 8 maskedcauses-0.10.0/maskedcauses/man/surv.exp_series.Rd | 7 maskedcauses-0.10.0/maskedcauses/tests/testthat/test-dist-structure-interop.R |only maskedcauses-0.10.0/maskedcauses/tests/testthat/test-utils.R | 26 +- maskedcauses-0.9.3/maskedcauses/man/cum_haz.Rd |only 21 files changed, 252 insertions(+), 104 deletions(-)
Title: Dynamic Failure Rate Distributions for Survival Analysis
Description: Flexible framework for specifying survival distributions through
their hazard (failure rate) functions. Define arbitrary time-varying
hazard functions to model complex failure patterns including bathtub
curves, proportional hazards with covariates, and other non-standard
hazard behaviors. Provides automatic computation of survival, CDF, PDF,
quantiles, and sampling. Implements the likelihood model interface for
maximum likelihood estimation with right-censored and left-censored
survival data.
Author: Alexander Towell [aut, cre]
Maintainer: Alexander Towell <queelius@gmail.com>
Diff between flexhaz versions 0.5.1 dated 2026-03-19 and 0.5.2 dated 2026-05-23
DESCRIPTION | 6 +++--- MD5 | 22 +++++++++++----------- NEWS.md | 9 +++++++++ R/distributions.R | 32 ++++++++++++++++++++------------ inst/doc/custom_distributions.html | 6 +++--- inst/doc/failure_rate.html | 4 ++-- inst/doc/flexhaz-package.html | 4 ++-- man/dfr_exponential.Rd | 3 +-- man/dfr_gompertz.Rd | 3 +-- man/dfr_loglogistic.Rd | 3 +-- man/dfr_weibull.Rd | 3 +-- tests/testthat/Rplots.pdf |binary 12 files changed, 54 insertions(+), 41 deletions(-)
Title: File-Backed Array for Out-of-Memory Computation
Description: Stores large arrays in files to avoid occupying large
memories. Implemented with super fast gigabyte-level multi-threaded
reading/writing via 'OpenMP'. Supports multiple non-character data
types (double, float, complex, integer, logical, and raw).
Author: Zhengjia Wang [aut, cre, cph]
Maintainer: Zhengjia Wang <dipterix.wang@gmail.com>
Diff between filearray versions 0.2.1 dated 2026-03-23 and 0.2.2 dated 2026-05-23
DESCRIPTION | 8 MD5 | 88 ++--- NEWS.md | 5 R/aaa.R | 40 +- R/bind.R | 52 +-- R/class-filearray.R | 289 ++++++++--------- R/class-proxy.R | 88 ++--- R/filearray-package.R | 48 +- R/header.R | 46 +- R/helpers.R | 88 ++--- R/internal_misc.R | 40 +- R/load.R | 56 +-- R/mapreduce.R | 42 +- R/method-map.R | 86 ++--- R/methods-add.R | 34 +- R/methods-apply.R | 14 R/methods-subset.R | 50 +-- R/methods-subsetAssign.R | 76 ++-- R/methods-typeof.R | 10 R/methods.R | 96 ++--- R/misc-docs.R | 6 R/write.R | 32 - build/vignette.rds |binary inst/doc/performance.R | 232 ++++++++----- inst/doc/performance.Rmd | 232 ++++++++----- inst/doc/performance.html | 368 ++++++++++++---------- man/S4-filearray.Rd | 3 man/filearray.Rd | 2 man/fmap.Rd | 12 man/mapreduce.Rd | 8 src/core.cpp | 38 ++ src/load.cpp | 9 tests/testthat/test-bind.R | 134 ++++---- tests/testthat/test-collapse.R | 499 +++++++++++++++++++----------- tests/testthat/test-cpp.R | 207 ++++++------ tests/testthat/test-dimnames.R | 54 +-- tests/testthat/test-helpers.R | 64 ++- tests/testthat/test-map.R | 90 +++-- tests/testthat/test-method_add.R | 18 - tests/testthat/test-method_sub.R | 18 - tests/testthat/test-method_subset.R | 49 ++ tests/testthat/test-method_subsetAssign.R | 20 - tests/testthat/test-methods.R | 12 tests/testthat/test-methods_simple.R | 14 vignettes/performance.Rmd | 232 ++++++++----- 45 files changed, 2077 insertions(+), 1532 deletions(-)
Title: Ecological Limit Function Model Generation and Analysis Toolkit
Description: A toolset for generating Ecological Limit Function (ELF) models and evaluating potential species loss resulting from flow change, based on the 'elfgen' framework. ELFs describe the relation between aquatic species richness (fish or benthic macroinvertebrates) and stream size characteristics (streamflow or drainage area). Journal publications are available outlining framework methodology (Kleiner et al. (2020) <doi:10.1111/1752-1688.12876>) and application (Rapp et al. (2020) <doi:10.1111/1752-1688.12877>).
Author: Joseph Kleiner [aut] ,
Robert Burgholzer [ctb] ,
Connor Brogan [cre]
Maintainer: Connor Brogan <connor.brogan@deq.virginia.gov>
Diff between elfgen versions 2.3.4 dated 2025-11-28 and 2.3.5 dated 2026-05-23
DESCRIPTION | 9 ++++++--- MD5 | 41 ++++++++++++++++++++++------------------- NEWS.md | 3 +++ R/bkpt-pwit.R | 7 +------ R/bkpt-ymax.R | 7 +------ R/clean-vahydro.R | 4 ---- R/data.R |only R/elfchange.R | 8 +------- R/elfdata-vahydro.R | 4 ---- R/elfdata.R | 22 +++++++++++----------- R/elfgen.R | 7 +------ R/richness-change.R | 7 +------ data |only man/bkpt_pwit.Rd | 7 +------ man/bkpt_ymax.Rd | 7 +------ man/clean_vahydro.Rd | 4 ---- man/elfchange.Rd | 8 +------- man/elfdata.Rd | 6 +++--- man/elfdata_vahydro.Rd | 4 ---- man/elfgen.Rd | 7 +------ man/richness_change.Rd | 7 +------ man/watershed.df.Rd |only tests/testthat/test-elfdata.R | 37 +++++++++++++++++++++++++++++-------- 23 files changed, 84 insertions(+), 122 deletions(-)
Title: A Dipping Sauce for Data Analysis and Visualizations
Description: Works as an "add-on" to packages like 'shiny', 'future', as well as
'rlang', and provides utility functions. Just like dipping sauce adding
flavors to potato chips or pita bread, 'dipsaus' for data analysis and
visualizations adds handy functions and enhancements to popular packages.
The goal is to provide simple solutions that are frequently asked for
online, such as how to synchronize 'shiny' inputs without freezing the app,
or how to get memory size on 'Linux' or 'MacOS' system. The enhancements
roughly fall into these four categories: 1. 'shiny' input widgets; 2.
high-performance computing using the 'future' package; 3.
modify R calls and convert among numbers, strings, and other objects. 4.
utility functions to get system information such like CPU chip-set, memory
limit, etc.
Author: Zhengjia Wang [aut, cre],
John Magnotti [ctb] ,
Xiang Zhang [ctb]
Maintainer: Zhengjia Wang <dipterix.wang@gmail.com>
Diff between dipsaus versions 0.3.4 dated 2026-03-20 and 0.3.5 dated 2026-05-23
dipsaus-0.3.4/dipsaus/man/attached_packages.Rd |only dipsaus-0.3.4/dipsaus/man/update_fastmap2.Rd |only dipsaus-0.3.5/dipsaus/DESCRIPTION | 12 dipsaus-0.3.5/dipsaus/MD5 | 264 +++++------ dipsaus-0.3.5/dipsaus/NAMESPACE | 1 dipsaus-0.3.5/dipsaus/NEWS.md | 14 dipsaus-0.3.5/dipsaus/R/aaa.R | 23 dipsaus-0.3.5/dipsaus/R/apply.R | 38 - dipsaus-0.3.5/dipsaus/R/cpp-baseline_array.R | 38 - dipsaus-0.3.5/dipsaus/R/cpp-collapse.R | 24 - dipsaus-0.3.5/dipsaus/R/cpp-fastcov2.R | 16 dipsaus-0.3.5/dipsaus/R/cpp-fastquantile.R | 4 dipsaus-0.3.5/dipsaus/R/credentials.R | 62 +- dipsaus-0.3.5/dipsaus/R/fastmap2.R | 94 ++- dipsaus-0.3.5/dipsaus/R/fastqueue2.R | 48 +- dipsaus-0.3.5/dipsaus/R/graphics.R | 70 +- dipsaus-0.3.5/dipsaus/R/language.R | 261 +++++----- dipsaus-0.3.5/dipsaus/R/lock.R | 100 ++-- dipsaus-0.3.5/dipsaus/R/map-abstract.R | 122 ++--- dipsaus-0.3.5/dipsaus/R/map-memory.R | 40 - dipsaus-0.3.5/dipsaus/R/map-rds.R | 86 +-- dipsaus-0.3.5/dipsaus/R/map-s3.R | 8 dipsaus-0.3.5/dipsaus/R/map-txt.R | 28 - dipsaus-0.3.5/dipsaus/R/parallels-apply-script.R | 82 +-- dipsaus-0.3.5/dipsaus/R/parallels-future.R | 76 +-- dipsaus-0.3.5/dipsaus/R/parallels-rscripts.R | 92 +-- dipsaus-0.3.5/dipsaus/R/parallels.R | 62 +- dipsaus-0.3.5/dipsaus/R/persist.R | 60 +- dipsaus-0.3.5/dipsaus/R/queue-abstract.R | 164 +++--- dipsaus-0.3.5/dipsaus/R/queue-memory.R | 142 ++--- dipsaus-0.3.5/dipsaus/R/queue-rds.R | 88 +-- dipsaus-0.3.5/dipsaus/R/queue-txtq.R | 38 - dipsaus-0.3.5/dipsaus/R/reexports.R | 5 dipsaus-0.3.5/dipsaus/R/rutabaga.R | 4 dipsaus-0.3.5/dipsaus/R/screenshot.R | 38 - dipsaus-0.3.5/dipsaus/R/shiny-actionbutton-styled.R | 43 + dipsaus-0.3.5/dipsaus/R/shiny-compoundInput2.R | 152 +++--- dipsaus-0.3.5/dipsaus/R/shiny-fancyFileInput.R | 162 +++--- dipsaus-0.3.5/dipsaus/R/shiny-flex-div.R | 85 +-- dipsaus-0.3.5/dipsaus/R/shiny-inputbindings.R | 134 ++--- dipsaus-0.3.5/dipsaus/R/shiny-progress.R | 121 ++--- dipsaus-0.3.5/dipsaus/R/shiny-setInputs.R | 67 +- dipsaus-0.3.5/dipsaus/R/shiny-swal-alert.R | 16 dipsaus-0.3.5/dipsaus/R/shiny-syncInputs.R | 26 - dipsaus-0.3.5/dipsaus/R/shortcuts.R | 123 ++--- dipsaus-0.3.5/dipsaus/R/strings-base64.R | 6 dipsaus-0.3.5/dipsaus/R/strings.R | 264 +++++------ dipsaus-0.3.5/dipsaus/R/systems.R | 89 +-- dipsaus-0.3.5/dipsaus/R/utils-filesystem.R | 34 - dipsaus-0.3.5/dipsaus/R/utils-package.R | 34 - dipsaus-0.3.5/dipsaus/R/utils-rstudio.R | 203 ++++---- dipsaus-0.3.5/dipsaus/R/utils.R | 122 ++--- dipsaus-0.3.5/dipsaus/R/zzz-finalizers.R | 111 ++-- dipsaus-0.3.5/dipsaus/R/zzz.R | 24 - dipsaus-0.3.5/dipsaus/build/vignette.rds |binary dipsaus-0.3.5/dipsaus/demo/example-actionButtonStyled.R | 14 dipsaus-0.3.5/dipsaus/demo/example-compountInput2.R | 30 - dipsaus-0.3.5/dipsaus/demo/example-fancyDirectoryInput.R | 140 ++--- dipsaus-0.3.5/dipsaus/inst/doc/r_expr_addons.R | 58 +- dipsaus-0.3.5/dipsaus/inst/doc/r_expr_addons.Rmd | 60 +- dipsaus-0.3.5/dipsaus/inst/doc/r_expr_addons.html | 81 +-- dipsaus-0.3.5/dipsaus/inst/doc/shiny_customized_widgets.R | 78 +-- dipsaus-0.3.5/dipsaus/inst/doc/shiny_customized_widgets.Rmd | 78 +-- dipsaus-0.3.5/dipsaus/inst/doc/shiny_customized_widgets.html | 102 ++-- dipsaus-0.3.5/dipsaus/inst/doc/utility_functions.R | 35 - 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dipsaus-0.3.5/dipsaus/tests/testthat/test.fastmap2.R | 24 - dipsaus-0.3.5/dipsaus/tests/testthat/test.finalizers.R | 28 - dipsaus-0.3.5/dipsaus/tests/testthat/test.hardware.R | 8 dipsaus-0.3.5/dipsaus/tests/testthat/test.maps.R | 6 dipsaus-0.3.5/dipsaus/tests/testthat/test.queues.R | 8 dipsaus-0.3.5/dipsaus/tests/testthat/test.shift_array.R | 24 - dipsaus-0.3.5/dipsaus/tests/testthat/test.zzz.R | 4 dipsaus-0.3.5/dipsaus/vignettes/r_expr_addons.Rmd | 60 +- dipsaus-0.3.5/dipsaus/vignettes/shiny_customized_widgets.Rmd | 78 +-- dipsaus-0.3.5/dipsaus/vignettes/utility_functions.Rmd | 22 134 files changed, 2830 insertions(+), 2605 deletions(-)
Title: Compositional Data Analysis
Description: Regression, classification, contour plots, hypothesis testing and fitting of distributions for compositional data are some of the functions included. We further include functions for percentages (or proportions).
The standard textbook for such data is John Aitchison's (1986) "The statistical analysis of compositional data". Relevant papers include:
a) Tsagris M.T., Preston S. and Wood A.T.A. (2011). "A data--based power transformation for compositional data". Fourth International International Workshop on Compositional Data Analysis. <doi:10.48550/arXiv.1106.1451>.
b) Tsagris M. (2014). "The k--NN algorithm for compositional data: a revised approach with and without zero values present". Journal of Data Science, 12(3): 519--534. <doi:10.6339/JDS.201407_12(3).0008>.
c) Tsagris M. (2015). "A novel, divergence based, regression for compositional data". Proceedings of the 28th Panhellenic Statistics Conference, 15-18 April 2015, Athens, Greece, 430--444. <doi:10.48550/arXiv. [...truncated...]
Author: Michail Tsagris [aut, cre],
Giorgos Athineou [aut],
Abdulaziz Alenazi [ctb],
Christos Adam [ctb]
Maintainer: Michail Tsagris <mtsagris@uoc.gr>
Diff between Compositional versions 8.1 dated 2026-02-17 and 8.2 dated 2026-05-23
DESCRIPTION | 30 ++++++------- MD5 | 98 +++++++++++++++++++++---------------------- NAMESPACE | 18 +++---- R/aeqdist.etest.R | 48 ++++++--------------- R/alfa.pcr.R | 10 +--- R/alfa.reg.R | 3 - R/alfa.reg2.R | 3 - R/alfa.reg3.R | 3 - R/alfa.tune.R | 6 +- R/dptest.R | 2 R/eel.test2.R | 4 - R/el.test2.R | 26 +++++------ R/eqdist.etest.R | 4 - R/gendiri.contour.R | 2 R/hd.meantest2.R | 4 - R/hellinger.compreg.R | 15 ++---- R/hotel2T2.R | 4 - R/ice.akernreg.R | 4 - R/ice.aknnreg.R | 4 - R/ice.kernreg.R | 4 - R/ice.pprcomp.R | 4 - R/james.R | 4 - R/js.compreg.R | 6 +- R/kl.compreg.R | 6 +- R/makefolds.R | 2 R/ols.compreg.R | 19 +++----- R/rda.tune.R | 2 R/rdiri.R | 2 R/rfd.R | 4 - R/rgendiri.R | 2 R/ridge.reg.R | 2 R/rlogitnorm.R | 2 R/rmixcomp.R | 2 R/rmixdiri.R | 2 R/scls.R | 4 - R/scls.betest.R | 2 R/scls.indeptest.R | 2 R/symkl.compreg.R | 6 +- R/ternary.coefcr.R | 4 - R/tflr.betest.R | 6 +- R/tflr.indeptest.R | 6 +- R/tflr.irls.R | 6 +- R/tv.compreg.R | 6 +- man/Compositional-package.Rd | 4 - man/aeqdist.etest.Rd | 8 +-- man/ice.akernreg.Rd | 4 - man/ice.aknnreg.Rd | 10 ++-- man/ice.kernreg.Rd | 4 - man/ice.pprcomp.Rd | 4 - man/ternary.coefcr.Rd | 5 -- 50 files changed, 199 insertions(+), 233 deletions(-)
Title: Likelihood Based Inference
Description: Maximum likelihood estimation and likelihood ratio test are essential for modern statistics. This package supports in calculating likelihood based inference.
Reference: Pawitan Y. (2001, ISBN:0-19-850765-8).
Author: Kyun-Seop Bae [aut, cre, cph]
Maintainer: Kyun-Seop Bae <k@acr.kr>
Diff between LBI versions 0.2.3 dated 2025-08-21 and 0.2.4 dated 2026-05-22
LBI-0.2.3/LBI/inst/doc |only LBI-0.2.4/LBI/DESCRIPTION | 6 +++--- LBI-0.2.4/LBI/MD5 | 7 +++---- LBI-0.2.4/LBI/R/LIvRatio.R | 4 ++-- LBI-0.2.4/LBI/inst/NEWS.Rd | 6 ++++++ 5 files changed, 14 insertions(+), 9 deletions(-)
Title: Multi-Stock Assessment
Description: Implementation of a next-generation, multi-stock age-structured fisheries assessment model.
'multiSA' is intended for use in mixed fisheries where stock composition can not be readily identified in
fishery data alone, e.g., from catch and age/length composition. Models can be fitted to genetic data,
e.g., stock composition of catches and close-kin pairs, with seasonal stock availability and movement.
Author: Quang Huynh [aut, cre]
Maintainer: Quang Huynh <quang@bluematterscience.com>
Diff between multiSA versions 0.1.1 dated 2026-03-20 and 0.2.0 dated 2026-05-22
DESCRIPTION | 8 MD5 | 57 - NAMESPACE | 1 NEWS.md | 10 R/calc_population.R | 807 ++++++++++-------- R/check-data.R | 1406 ++++++++++++++++---------------- R/like.R | 319 ++++--- R/make-parameters.R | 1704 +++++++++++++++++++------------------- R/misc.R | 879 ++++++++++---------- R/model.R | 174 ++- R/model_int.R | 38 R/report-int-data.R | 315 +++++-- R/report-int-state.R | 1924 +++++++++++++++++++++++--------------------- R/report-rmd.R | 762 ++++++++--------- R/resid.R | 26 R/rtmb-methods.R | 252 ++--- R/selectivity.R | 472 ++++++---- R/simulate.R | 50 - build/partial.rdb |binary inst/include/MSAreport.Rmd | 206 ++-- man/calc_eqdist.Rd | 70 - man/calc_init_population.Rd |only man/calc_phi_project.Rd | 2 man/calc_population.Rd | 2 man/conv_selpar.Rd | 26 man/fit_MSA.Rd | 4 man/like_comp.Rd | 4 man/make_parameters.Rd | 12 man/plot-MSA-data.Rd | 27 man/plot-MSA-state.Rd | 41 30 files changed, 5083 insertions(+), 4515 deletions(-)
Title: Species Distribution Modeling with H3 Grids
Description: Provides tools for species distribution modeling using H3
hexagonal grids (Uber Technologies Inc., 2022, <https://h3geo.org>).
Facilitates retrieval of species occurrence records, generation of H3 grids,
computation of landscape metrics, and preparation of spatial data for modern
species distribution models workflows. Designed for biodiversity and landscape ecology research.
Author: Manuel Spinola [aut, cre]
Maintainer: Manuel Spinola <mspinola10@gmail.com>
Diff between h3sdm versions 0.1.1 dated 2026-05-13 and 0.1.2 dated 2026-05-22
DESCRIPTION | 8 - MD5 | 24 ++--- NAMESPACE | 3 NEWS.md | 16 +++ R/h3sdm_fit_model.R | 26 ++++-- R/h3sdm_get_records.R | 193 +++++++++++++++++++++++++++++++++-------------- R/h3sdm_pa.R | 6 + R/h3sdm_predict.R | 28 ++++-- inst/doc/h3sdm.html | 32 +++---- man/h3sdm_fit_model.Rd | 13 +-- man/h3sdm_get_records.Rd | 73 ++++++++++------- man/h3sdm_pa.Rd | 6 + man/h3sdm_predict.Rd | 8 + 13 files changed, 294 insertions(+), 142 deletions(-)
Title: Sex- and Age-Standardized Metrics from the Centers for Disease
Control and Prevention (CDC) Growth Charts
Description: Calculation of sex- and age-standardized growth metrics
based on the 2000 CDC growth charts. Provides functions to generate
z-scores and percentiles for weight, height, and body mass index (BMI)
using the LMS method (lambda-mu-sigma). Includes extended BMI z-scores
for values above the 95th percentile to more accurately characterize
the sex- and age-standardized BMI of children with very high BMIs.
Author: David Freedman [aut, cre]
Maintainer: David Freedman <DavidSFreedman@gmail.com>
Diff between cdcanthro versions 0.1.0 dated 2026-03-17 and 0.2.0 dated 2026-05-22
DESCRIPTION | 27 +- MD5 | 9 NAMESPACE | 5 NEWS.md |only R/cdcanthro.R | 501 ++++++++++++++++++++++++++++++++----------------------- man/cdcanthro.Rd | 222 +++++++++++++----------- 6 files changed, 448 insertions(+), 316 deletions(-)
Title: End-to-End Automated Machine Learning and Model Evaluation
Description: Single unified interface for end-to-end modelling of regression,
categorical and time-to-event (survival) outcomes. Models created using
familiar are self-containing, and their use does not require additional
information such as baseline survival, feature clustering, or feature
transformation and normalisation parameters. Model performance,
calibration, risk group stratification, (permutation) variable importance,
individual conditional expectation, partial dependence, and more, are
assessed automatically as part of the evaluation process and exported in
tabular format and plotted, and may also be computed manually using export
and plot functions. Where possible, metrics and values obtained during the
evaluation process come with confidence intervals.
Author: Alex Zwanenburg [aut, cre] ,
Steffen Loeck [aut],
German Cancer Research Center [cph],
Technische Universitaet Dresden [cph]
Maintainer: Alex Zwanenburg <alexander.zwanenburg@nct-dresden.de>
Diff between familiar versions 2.0.0 dated 2026-04-23 and 2.0.1 dated 2026-05-22
DESCRIPTION | 8 MD5 | 160 ++++++------ NAMESPACE | 1 NEWS.md | 32 ++ R/DataObject.R | 5 R/DataParameterChecks.R | 15 + R/Familiar.R | 6 R/FamiliarDataComputation.R | 12 R/FamiliarDataComputationFeatureExpression.R | 34 ++ R/FamiliarDataComputationFeatureSimilarity.R | 43 +++ R/FamiliarDataComputationICE.R | 2 R/FamiliarDataComputationRiskStratificationData.R | 14 - R/FamiliarDataComputationSHAP.R | 2 R/FamiliarDataComputationSampleSimilarity.R | 29 +- R/FamiliarDataComputationUtilities.R | 64 +++- R/FamiliarObjectConversion.R | 1 R/PlotFeatureSimilarity.R | 26 +- R/PlotICE.R | 2 R/PlotKaplanMeier.R | 18 + R/PlotSampleClustering.R | 45 +++ build/vignette.rds |binary man/as_familiar_collection-methods.Rd | 5 man/as_familiar_data-methods.Rd | 5 man/dot-extract_data.Rd | 5 man/dot-parse_general_settings.Rd | 2 man/dot-parse_initial_settings.Rd | 2 man/export_all-methods.Rd | 5 man/export_auc_data-methods.Rd | 2 man/export_calibration_data-methods.Rd | 2 man/export_calibration_info-methods.Rd | 150 +++++------ man/export_confusion_matrix_data-methods.Rd | 2 man/export_decision_curve_analysis_data-methods.Rd | 138 +++++----- man/export_feature_expressions-methods.Rd | 137 ++++++++++ man/export_feature_similarity-methods.Rd | 138 ++++++++++ man/export_fs_vimp-methods.Rd | 256 +++++++++---------- man/export_hyperparameters-methods.Rd | 154 +++++------ man/export_ice_data-methods.Rd | 2 man/export_model_performance-methods.Rd | 2 man/export_model_vimp-methods.Rd | 260 ++++++++++---------- man/export_partial_dependence_data-methods.Rd | 2 man/export_permutation_vimp-methods.Rd | 2 man/export_prediction_data-methods.Rd | 2 man/export_risk_stratification_data-methods.Rd | 5 man/export_risk_stratification_info-methods.Rd | 189 +++++++------- man/export_sample_similarity-methods.Rd | 131 ++++++++++ man/export_shap-methods.Rd | 2 man/export_univariate_analysis_data-methods.Rd | 2 man/extract_feature_similarity.Rd | 3 man/extract_risk_stratification_data.Rd | 3 man/extract_risk_stratification_info.Rd | 3 man/extract_sample_similarity.Rd | 5 man/familiar.Rd | 1 man/plot_auc_precision_recall_curve-methods.Rd | 2 man/plot_auc_roc_curve-methods.Rd | 2 man/plot_calibration_data-methods.Rd | 2 man/plot_confusion_matrix-methods.Rd | 2 man/plot_decision_curve-methods.Rd | 2 man/plot_feature_similarity-methods.Rd | 15 + man/plot_ice-methods.Rd | 2 man/plot_kaplan_meier-methods.Rd | 2 man/plot_model_performance-methods.Rd | 2 man/plot_pd-methods.Rd | 2 man/plot_permutation_variable_importance-methods.Rd | 2 man/plot_sample_clustering-methods.Rd | 21 + man/plot_shap_dependence-methods.Rd | 2 man/plot_shap_force-methods.Rd | 2 man/plot_shap_summary-methods.Rd | 2 man/plot_shap_waterfall-methods.Rd | 2 man/plot_univariate_importance-methods.Rd | 2 man/plot_variable_importance-methods.Rd | 2 man/precompute_data_assignment.Rd | 2 man/precompute_feature_info.Rd | 2 man/precompute_vimp.Rd | 2 man/summon_familiar.Rd | 2 man/train_familiar.Rd | 2 tests/testthat.R | 9 tests/testthat/test-experimental_design.R | 151 +++++------ tests/testthat/test-experimental_design_imbalance.R |only tests/testthat/test-experimental_design_loocv.R |only tests/testthat/test-plot_feature_similarity.R | 37 ++ tests/testthat/test-plot_kaplan_meier_curve.R | 22 + tests/testthat/test-plot_sample_clustering_b.R | 47 +++ 82 files changed, 1653 insertions(+), 827 deletions(-)
Title: Access the 'CDC PLACES' API
Description: Allows users to seamlessly query several 'CDC PLACES' APIs (<https://data.cdc.gov/browse?q=PLACES%20&sortBy=relevance>)
by geography, state, measure, and release year. This package also contains a
function to explore the available measures for each release year.
Author: Brenden Smith [aut, cre]
Maintainer: Brenden Smith <smit2535@msu.edu>
Diff between CDCPLACES versions 1.2.0 dated 2026-02-12 and 1.2.1 dated 2026-05-22
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- NEWS.md | 15 +++++++++++++++ R/get_places.R | 24 +++++++++++++++++++++--- R/sysdata.rda |binary README.md | 2 +- tests/testthat/test-get_places.R | 4 ++-- tests/testthat/test-helpers.R | 7 ------- 8 files changed, 49 insertions(+), 23 deletions(-)
Title: Reliability Growth Analysis and Repairable Systems Modeling
Description: Modeling and plotting functions for Reliability Growth Analysis (RGA) and Non-Homogeneous Poisson Process (NHPP) models for repairable systems. RGA models include the Duane (1962) <doi:10.1109/TA.1964.4319640>, NHPP by Crow (1975) (No. AMSAATR138), Piecewise Weibull NHPP by Guo et al. (2010) <doi:10.1109/RAMS.2010.5448029>, and Piecewise Weibull NHPP with Change Point Detection based on the 'segmented' package by Muggeo (2024) <https://cran.r-project.org/package=segmented>. Repairable systems functions include the Mean Cumulative Function (MCF) using the Nelson-Aalen estimator, parametric Power Law and Log-Linear NHPP models, and forecasting.
Author: Paul Govan [aut, cre, cph]
Maintainer: Paul Govan <paul.govan2@gmail.com>
Diff between ReliaGrowR versions 0.6 dated 2026-04-16 and 0.7 dated 2026-05-22
DESCRIPTION | 10 - MD5 | 60 ++++-- NAMESPACE | 9 NEWS.md | 16 + R/duane.R | 295 ++++++++++++++++++++++++++++--- R/gof.R | 118 ++++++++++++ R/mcp.R |only R/nhpp.R | 82 ++++++-- README.md | 38 +++ build/vignette.rds |binary inst/doc/MCP.R |only inst/doc/MCP.Rmd |only inst/doc/MCP.html |only inst/doc/RDT.R |only inst/doc/RDT.Rmd |only inst/doc/RDT.html |only inst/doc/RSA.R | 42 +--- inst/doc/RSA.Rmd | 62 +++--- inst/doc/RSA.html | 88 +++++---- inst/mcp |only man/duane.Rd | 17 + man/figures/README-forecast-1.png |only man/figures/README-unnamed-chunk-6-1.png |only man/gof.Rd |only man/mcp.Rd |only man/plot.duane.Rd | 19 + man/plot.duane_predict.Rd |only man/ppplot.rga.Rd | 2 man/predict_duane.Rd |only man/print.duane.Rd | 5 man/print.duane_predict.Rd |only man/print.gof.Rd |only man/qqplot.rga.Rd | 4 man/rga_mcp_server.Rd |only tests/testthat/Rplots.pdf |binary tests/testthat/test-srr-duane.R | 162 ++++++++++++++--- tests/testthat/test-srr-gof.R | 54 +++++ tests/testthat/test-srr-mcp.R |only vignettes/MCP.Rmd |only vignettes/RDT.Rmd |only vignettes/RSA.Rmd | 62 +++--- 41 files changed, 916 insertions(+), 229 deletions(-)
Title: Sparse Principal Component Analysis with Multiple Principal
Components
Description: Implements an algorithm for computing multiple sparse principal
components of a dataset. The method is based on Cory-Wright and Pauphilet
"Sparse PCA with Multiple Principal Components" (2026)
<doi:10.48550/arXiv.2209.14790>. The algorithm uses an iterative deflation
heuristic with a truncated power method applied at each iteration to compute
sparse principal components with controlled sparsity.
Author: Ryan Cory-Wright [aut, cph] ,
Jean Pauphilet [aut, cre, cph]
Maintainer: Jean Pauphilet <jpauphilet@london.edu>
Diff between msPCA versions 0.3.0 dated 2026-05-15 and 0.4.0 dated 2026-05-22
msPCA-0.3.0/msPCA/man/orthogonality_violation.Rd |only msPCA-0.3.0/msPCA/man/pairwise_correlation.Rd |only msPCA-0.4.0/msPCA/DESCRIPTION | 10 ++-- msPCA-0.4.0/msPCA/MD5 | 21 ++++----- msPCA-0.4.0/msPCA/NAMESPACE | 6 +- msPCA-0.4.0/msPCA/NEWS.md | 8 +++ msPCA-0.4.0/msPCA/R/RcppExports.R | 4 - msPCA-0.4.0/msPCA/R/main.R | 44 ++++++++------------ msPCA-0.4.0/msPCA/man/feasibility_violation_off.Rd |only msPCA-0.4.0/msPCA/man/mspca.Rd | 18 ++++---- msPCA-0.4.0/msPCA/man/print_mspca.Rd | 2 msPCA-0.4.0/msPCA/src/RcppExports.cpp | 14 +++--- msPCA-0.4.0/msPCA/src/msPCA_R_CPP.cpp | 45 +++++++++++++-------- 13 files changed, 91 insertions(+), 81 deletions(-)
Title: RFSI & STRK Interpolation for Meteo and Environmental Variables
Description: Random Forest Spatial Interpolation (RFSI, Sekulić et al. (2020) <doi:10.3390/rs12101687>) and spatio-temporal geostatistical (spatio-temporal regression Kriging (STRK)) interpolation for meteorological (Kilibarda et al. (2014) <doi:10.1002/2013JD020803>, Sekulić et al. (2020) <doi:10.1007/s00704-019-03077-3>) and other environmental variables. Contains global spatio-temporal models calculated using publicly available data.
Author: Milan Kilibarda [aut] ,
Aleksandar Sekulic [aut, cre] ,
Tomislav Hengl [ctb],
Edzer Pebesma [ctb],
Benedikt Graeler [ctb]
Maintainer: Aleksandar Sekulic <asekulic@grf.bg.ac.rs>
Diff between meteo versions 2.0-4 dated 2026-03-24 and 2.0-5 dated 2026-05-22
DESCRIPTION | 8 ++++---- MD5 | 22 +++++++++++----------- R/near.obs.R | 41 +++++++++++++++++++++++++++++++++++++---- R/near.obs.batimetry.R | 16 ++++++++++------ man/dprec.Rd | 2 +- man/dslp.Rd | 2 +- man/dsndp.Rd | 2 +- man/dtemp_maxc.Rd | 2 +- man/dtemp_minc.Rd | 2 +- man/dtempc.Rd | 2 +- man/dwdsp.Rd | 2 +- man/stations.Rd | 2 +- 12 files changed, 70 insertions(+), 33 deletions(-)
Title: Assertion and Message Functions
Description: Enhanced message functions (cat() / message() / warning() / error())
using wrappers around sprintf(). Also, multiple assertion functions
(e.g. to check class, length, values, files, arguments, etc.).
Author: Florian Prive [aut, cre]
Maintainer: Florian Prive <florian.prive.21@gmail.com>
Diff between bigassertr versions 0.1.7 dated 2025-06-27 and 0.2.0 dated 2026-05-22
DESCRIPTION | 10 +++---- MD5 | 8 ++--- R/assert.R | 59 +++++++++++++++++++++--------------------- R/message.R | 81 ++++++++++++++++++++++++++++++++++------------------------ man/printf.Rd | 8 ++++- 5 files changed, 93 insertions(+), 73 deletions(-)
Title: A Unified Time Series Event Detection Framework
Description: By analyzing time series, it is possible to observe significant changes in the behavior of observations that frequently characterize events. Events present themselves as anomalies, change points, or motifs. In the literature, there are several methods for detecting events. However, searching for a suitable time series method is a complex task, especially considering that the nature of events is often unknown. This work presents Harbinger, a framework for integrating and analyzing event detection methods. Harbinger contains several state-of-the-art methods described in Salles et al. (2020) <doi:10.5753/sbbd.2020.13626>.
Author: Eduardo Ogasawara [aut, ths, cre] ,
Anthony Heimlich [aut],
Antonio Castro [aut],
Antonio Mello [aut],
Diego Carvalho [ctb],
Eduardo Bezerra [ctb],
Ellen Paixao [aut],
Fernando Fraga [aut],
Gabriel Giuliano [aut],
Heraldo Borges [aut],
Igor Andrade [ [...truncated...]
Maintainer: Eduardo Ogasawara <eogasawara@ieee.org>
Diff between harbinger versions 2.0.747 dated 2026-05-14 and 2.0.757 dated 2026-05-22
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ R/hanr_ml.R | 12 ++++++++++-- R/hanr_remd.R | 16 ++++++++++------ R/hcp_waypoint.R | 6 ++---- man/hanr_ml.Rd | 5 +++++ man/hanr_remd.Rd | 3 +++ 7 files changed, 39 insertions(+), 21 deletions(-)
Title: Deep Python Extensions for 'daltoolbox'
Description: Extends 'daltoolbox' with Python-backed components for deep learning,
scikit-learn classification, and time-series forecasting through
'reticulate'. The package provides objects that follow the 'daltoolbox'
architecture while delegating model creation, fitting, encoding, and
prediction to Python libraries such as 'torch' and 'scikit-learn'. In the
package name, 'dp' stands for 'Deep Python'. The overall workflow is
inspired by the Experiment Lines approach described in Ogasawara et al.
(2009) <doi:10.1007/978-3-642-02279-1_20>.
Author: Eduardo Ogasawara [aut, ths, cre] ,
Diego Salles [aut],
Erich Carvalho [aut],
Janio Lima [aut],
Joao Kongevold [aut],
Lucas Tavares [aut],
Eduardo Bezerra [ctb],
CEFET/RJ [cph]
Maintainer: Eduardo Ogasawara <eogasawara@ieee.org>
Diff between daltoolboxdp versions 1.3.737 dated 2026-05-14 and 1.3.747 dated 2026-05-22
DESCRIPTION | 6 ++--- MD5 | 18 ++++++++-------- R/torch_reg_mlp.R | 55 ++++++++++++++++++++++++++++++++++++++++++--------- R/torch_ts_mlp.R | 18 +++++++++++++--- R/ts_conv1d.R | 18 +++++++++++++--- R/ts_lstm.R | 18 +++++++++++++--- man/torch_reg_mlp.Rd | 6 ++--- man/torch_ts_mlp.Rd | 11 ++++++++++ man/ts_conv1d.Rd | 10 +++++++++ man/ts_lstm.Rd | 10 +++++++++ 10 files changed, 137 insertions(+), 33 deletions(-)
Title: Time Series Prediction with Integrated Tuning
Description: Time series prediction is a critical task in data analysis, requiring not only the selection of appropriate models, but also suitable data preprocessing and tuning strategies.
TSPredIT (Time Series Prediction with Integrated Tuning) is a framework that provides a seamless integration of data preprocessing, decomposition, model training, hyperparameter optimization, and evaluation.
Unlike other frameworks, TSPredIT emphasizes the co-optimization of both preprocessing and modeling steps, improving predictive performance.
It supports a variety of statistical and machine learning models, filtering techniques, outlier detection, data augmentation, and ensemble strategies.
More information is available in Salles et al. <doi:10.1007/978-3-662-68014-8_2>.
Author: Eduardo Ogasawara [aut, ths, cre] ,
Cristiane Gea [aut],
Diego Carvalho [ctb],
Diogo Santos [aut],
Arthur Garcia [aut],
Eduardo Bezerra [ctb],
Esther Pacitti [ctb],
Fabio Porto [ctb],
Fernando Alexandrino [aut],
Rebecca Salles [aut],
Vitoria Birindib [...truncated...]
Maintainer: Eduardo Ogasawara <eogasawara@ieee.org>
Diff between tspredit versions 1.3.707 dated 2026-05-14 and 2.0.707 dated 2026-05-22
DESCRIPTION | 9 +- MD5 | 198 +++++++++++++++++++++++++--------------------- NAMESPACE | 31 +++++++ R/ts_arima.R | 10 +- R/ts_arimax.R |only R/ts_aug_awareness.R | 2 R/ts_aug_awaresmooth.R | 2 R/ts_aug_flip.R | 2 R/ts_aug_jitter.R | 2 R/ts_aug_none.R | 2 R/ts_aug_shrink.R | 2 R/ts_aug_stretch.R | 2 R/ts_aug_wormhole.R | 2 R/ts_darima.R |only R/ts_data.R | 15 ++- R/ts_data_mv.R |only R/ts_deterministic.R |only R/ts_elm.R | 8 + R/ts_fil_ema.R | 2 R/ts_fil_emd.R | 2 R/ts_fil_fft.R | 2 R/ts_fil_hp.R | 2 R/ts_fil_kalman.R | 2 R/ts_fil_lowess.R | 2 R/ts_fil_ma.R | 2 R/ts_fil_none.R | 2 R/ts_fil_qes.R | 2 R/ts_fil_recursive.R | 2 R/ts_fil_remd.R | 2 R/ts_fil_seas_adj.R | 2 R/ts_fil_ses.R | 2 R/ts_fil_smooth.R | 2 R/ts_fil_spline.R | 2 R/ts_fil_wavelet.R | 2 R/ts_fil_winsor.R | 2 R/ts_integtune.R | 4 R/ts_knn.R | 4 R/ts_lagmap.R | 7 + R/ts_lm_mv.R |only R/ts_mlp.R | 4 R/ts_norm_an.R | 21 +++- R/ts_norm_diff.R | 7 + R/ts_norm_gminmax.R | 2 R/ts_norm_none.R | 2 R/ts_norm_swminmax.R | 2 R/ts_plot_mv.R |only R/ts_reg_mv.R |only R/ts_regsw.R | 18 +++- R/ts_regsw_mv.R |only R/ts_rf.R | 4 R/ts_sample.R | 18 +++- R/ts_svm.R | 4 R/ts_tune.R | 4 R/ts_var.R |only R/ts_warma.R |only README.md | 36 ++++++++ man/adjust_ts_data_mv.Rd |only man/plot_ts_pred_mv.Rd |only man/ts_arima.Rd | 8 - man/ts_arimax.Rd |only man/ts_aug_awareness.Rd | 2 man/ts_aug_awaresmooth.Rd | 2 man/ts_aug_flip.Rd | 2 man/ts_aug_jitter.Rd | 2 man/ts_aug_none.Rd | 2 man/ts_aug_shrink.Rd | 2 man/ts_aug_stretch.Rd | 2 man/ts_aug_wormhole.Rd | 2 man/ts_darima.Rd |only man/ts_data.Rd | 7 - man/ts_data_mv.Rd |only man/ts_deterministic.Rd |only man/ts_elm.Rd | 4 man/ts_fil_ema.Rd | 2 man/ts_fil_emd.Rd | 2 man/ts_fil_fft.Rd | 2 man/ts_fil_hp.Rd | 2 man/ts_fil_kalman.Rd | 2 man/ts_fil_lowess.Rd | 2 man/ts_fil_ma.Rd | 2 man/ts_fil_none.Rd | 2 man/ts_fil_qes.Rd | 2 man/ts_fil_recursive.Rd | 2 man/ts_fil_remd.Rd | 2 man/ts_fil_seas_adj.Rd | 2 man/ts_fil_ses.Rd | 2 man/ts_fil_smooth.Rd | 2 man/ts_fil_spline.Rd | 2 man/ts_fil_wavelet.Rd | 2 man/ts_fil_winsor.Rd | 2 man/ts_integtune.Rd | 4 man/ts_knn.Rd | 4 man/ts_lagmap.Rd | 7 + man/ts_lm_mv.Rd |only man/ts_mlp.Rd | 4 man/ts_mv_spec.Rd |only man/ts_norm_an.Rd | 11 +- man/ts_norm_diff.Rd | 7 + man/ts_norm_gminmax.Rd | 2 man/ts_norm_none.Rd | 2 man/ts_norm_swminmax.Rd | 2 man/ts_periodic.Rd |only man/ts_persist.Rd |only man/ts_reg_mv.Rd |only man/ts_regsw.Rd | 6 + man/ts_regsw_mv.Rd |only man/ts_rf.Rd | 4 man/ts_sample.Rd | 9 +- man/ts_svm.Rd | 4 man/ts_tune.Rd | 4 man/ts_var.Rd |only man/ts_warma.Rd |only 112 files changed, 386 insertions(+), 211 deletions(-)
Title: Serology-Based Data Analysis and Visualization
Description: Data wrangling and cleaning, quality control checks and
implementation of machine learning classification algorithm.
Author: Dionne Argyropoulos [aut, cre]
Maintainer: Dionne Argyropoulos <argyropoulos.d@wehi.edu.au>
Diff between SeroTrackR versions 1.0.0 dated 2026-03-26 and 1.1.0 dated 2026-05-22
SeroTrackR-1.0.0/SeroTrackR/inst/extdata/excluding_LF016_threshold_values.csv |only SeroTrackR-1.1.0/SeroTrackR/DESCRIPTION | 16 SeroTrackR-1.1.0/SeroTrackR/MD5 | 74 SeroTrackR-1.1.0/SeroTrackR/NAMESPACE | 3 SeroTrackR-1.1.0/SeroTrackR/NEWS.md | 18 SeroTrackR-1.1.0/SeroTrackR/R/MFItoRAU.R | 59 SeroTrackR-1.1.0/SeroTrackR/R/classifyResults.R | 57 SeroTrackR-1.1.0/SeroTrackR/R/globals.R | 12 SeroTrackR-1.1.0/SeroTrackR/R/plotBoxPlotClassification.R | 3 SeroTrackR-1.1.0/SeroTrackR/R/plotMFI.R | 2 SeroTrackR-1.1.0/SeroTrackR/R/plotRAU.R | 2 SeroTrackR-1.1.0/SeroTrackR/R/plotStds.R | 130 - SeroTrackR-1.1.0/SeroTrackR/R/processPkPfPv.R | 8 SeroTrackR-1.1.0/SeroTrackR/R/readSeroData.R | 82 SeroTrackR-1.1.0/SeroTrackR/R/renderClassificationTable.R | 7 SeroTrackR-1.1.0/SeroTrackR/R/renderQCReport.R | 50 SeroTrackR-1.1.0/SeroTrackR/R/renderReport.R | 33 SeroTrackR-1.1.0/SeroTrackR/R/runPlasmoPipeline.R | 14 SeroTrackR-1.1.0/SeroTrackR/R/runPvSeroPipeline.R | 14 SeroTrackR-1.1.0/SeroTrackR/build/vignette.rds |binary SeroTrackR-1.1.0/SeroTrackR/inst/doc/FAQs.R | 116 + SeroTrackR-1.1.0/SeroTrackR/inst/doc/FAQs.Rmd | 230 ++ SeroTrackR-1.1.0/SeroTrackR/inst/doc/FAQs.html | 192 + SeroTrackR-1.1.0/SeroTrackR/inst/doc/Pk_Pv_Pf_Serology_Tutorial.html | 970 +++++----- SeroTrackR-1.1.0/SeroTrackR/inst/doc/PvSeroApp_R_Tutorial.html | 20 SeroTrackR-1.1.0/SeroTrackR/inst/doc/setup.Rmd | 16 SeroTrackR-1.1.0/SeroTrackR/inst/doc/setup.html | 18 SeroTrackR-1.1.0/SeroTrackR/inst/rmd/experiment1_20260408_ETH_v1.5.1_QCreport.log |only SeroTrackR-1.1.0/SeroTrackR/man/SeroTrackR-package.Rd | 5 SeroTrackR-1.1.0/SeroTrackR/man/classifyResults.Rd | 14 SeroTrackR-1.1.0/SeroTrackR/man/dot-check_platform.Rd | 8 SeroTrackR-1.1.0/SeroTrackR/man/dot-relabel_columns.Rd | 1 SeroTrackR-1.1.0/SeroTrackR/man/plotBoxPlotClassification.Rd | 3 SeroTrackR-1.1.0/SeroTrackR/man/readSeroData.Rd | 2 SeroTrackR-1.1.0/SeroTrackR/man/renderClassificationTable.Rd | 4 SeroTrackR-1.1.0/SeroTrackR/man/runPlasmoPipeline.Rd | 14 SeroTrackR-1.1.0/SeroTrackR/man/runPvSeroPipeline.Rd | 14 SeroTrackR-1.1.0/SeroTrackR/vignettes/FAQs.Rmd | 230 ++ SeroTrackR-1.1.0/SeroTrackR/vignettes/setup.Rmd | 16 39 files changed, 1620 insertions(+), 837 deletions(-)
Title: R Access to the 'FMP Cloud' and 'Financial Modeling Prep' API
Description: Use R to access to the 'Financial Modeling Prep' API <https://site.financialmodelingprep.com>.
Data available includes stock prices, market indexes, company fundamentals,
13F holdings data, and much more. A valid API token must be set to enable
functions.
Author: Anthony Trevisan [aut, cre]
Maintainer: Anthony Trevisan <tony@altanalyticsllc.com>
Diff between fmpcloudr versions 0.1.5 dated 2021-03-01 and 0.1.7 dated 2026-05-22
DESCRIPTION | 24 ++++++++++------------ MD5 | 36 +++++++++++++++++---------------- NAMESPACE | 1 NEWS.md | 9 +++++++- R/other.R | 37 +++++++++++++++++++++++++++++++++- R/setup.R | 7 +++--- R/utils.R | 2 - README.md | 33 ++++++++++++++++++------------ man/fmpc_cots_data.Rd | 4 +++ man/fmpc_etf_list.Rd |only man/fmpc_set_token.Rd | 7 +++--- tests/testthat/helper-skip.R |only tests/testthat/test-calendar.R | 4 --- tests/testthat/test-financials.R | 6 +---- tests/testthat/test-holdings.R | 6 +---- tests/testthat/test-marketInfo.R | 8 +------ tests/testthat/test-other.R | 5 +++- tests/testthat/test-pricing.R | 13 ++++------- tests/testthat/test-secDetails.R | 5 +--- tests/testthat/test-securityMetrics.R | 12 ++++------- 20 files changed, 131 insertions(+), 88 deletions(-)
Title: Parallel GLM
Description: Provides a parallel estimation method for generalized linear
models without compiling with a multithreaded LAPACK or BLAS.
Author: Benjamin Christoffersen [aut] ,
Anthony Williams [cph],
Boost developers [cph],
Tom Palmer [aut, cre]
Maintainer: Tom Palmer <remlapmot@hotmail.com>
Diff between parglm versions 0.1.9-1 dated 2026-05-14 and 0.1.10 dated 2026-05-22
DESCRIPTION | 6 +++--- MD5 | 20 ++++++++++---------- NEWS.md | 7 +++++++ R/parglm.R | 2 +- inst/doc/parglm.Rmd | 4 ++-- inst/doc/parglm.html | 6 +++--- man/parglm.Rd | 2 +- src/thread_pool.h | 7 ++++--- tests/testthat/test_misc.R | 16 +++++++++------- vignettes/parglm.Rmd | 4 ++-- vignettes/parglm.Rmd.orig | 4 ++-- 11 files changed, 44 insertions(+), 34 deletions(-)
Title: Translate R Expressions to 'MathML' and 'LaTeX'/'MathJax'
Description: Translate R expressions to 'MathML' or 'MathJax'/'LaTeX' so that
they can be rendered in R markdown documents and shiny apps. This package
depends on R package 'rolog', which requires an installation of the
'SWI'-'Prolog' runtime either from 'swi-prolog.org' or from R
package 'rswipl'.
Author: Matthias Gondan [aut, cre, cph] ,
Irene Alfarone [aut] ,
European Commission [fnd]
Maintainer: Matthias Gondan <Matthias.Gondan-Rochon@uibk.ac.at>
Diff between mathml versions 1.7 dated 2026-01-17 and 1.8 dated 2026-05-22
DESCRIPTION | 10 +- MD5 | 22 ++-- NEWS.md | 6 + R/mathml.R | 41 +++++++- build/vignette.rds |binary inst/doc/mathml.R | 19 ++-- inst/doc/mathml.Rmd | 29 +++--- inst/doc/mathml.html | 198 +++++++++++++++++++++--------------------- inst/pl/lib/main.pl | 2 inst/pl/lib/op.pl | 19 ++-- vignettes/bibliography.bibtex | 2 vignettes/mathml.Rmd | 29 +++--- 12 files changed, 219 insertions(+), 158 deletions(-)
Title: Data Base Backend for 'mlr3'
Description: Extends the 'mlr3' package with a backend to transparently
work with databases such as 'SQLite', 'DuckDB', 'MySQL', 'MariaDB', or
'PostgreSQL'. The package provides three additional backends:
'DataBackendDplyr' relies on the abstraction of package 'dbplyr' to
interact with most DBMS. 'DataBackendDuckDB' operates on 'DuckDB' data
bases and also on Apache Parquet files. 'DataBackendPolars' operates on
'Polars' data frames.
Author: Michel Lang [aut] ,
Lona Koers [aut],
Marc Becker [cre, aut]
Maintainer: Marc Becker <marcbecker@posteo.de>
Diff between mlr3db versions 0.7.1 dated 2026-02-28 and 0.7.2 dated 2026-05-22
DESCRIPTION | 6 +- MD5 | 26 ++++++------ NEWS.md | 4 + R/DataBackendDplyr.R | 35 +++++++++++----- R/DataBackendDuckDB.R | 67 ++++++++++++++++++++++---------- R/DataBackendPolars.R | 51 +++++++++++++++--------- R/as_duckdb_backend.R | 29 ++++++++++--- R/as_polars_backend.R | 5 +- R/as_sqlite_backend.R | 12 ++++- R/helper.R | 5 -- R/zzz.R | 3 - tests/testthat/helper.R | 3 + tests/testthat/test_as_polars_backend.R | 1 tests/testthat/test_polars.R | 18 +++++--- 14 files changed, 175 insertions(+), 90 deletions(-)
Title: Joint Model for Longitudinal and Multiple Time to Events Data
Description: Provides model fitting, prediction, and plotting for joint models of longitudinal and multiple time-to-event data, including methods from Rizopoulos (2012) <doi:10.1201/b12208>. Useful for handling complex survival and longitudinal data in clinical research.
Author: Atanu Bhattacharjee [aut, cre]
Maintainer: Atanu Bhattacharjee <atanustat@gmail.com>
Diff between JMbdirect versions 0.1.0 dated 2025-03-11 and 0.1.1 dated 2026-05-22
DESCRIPTION | 18 +++++++----------- MD5 | 24 ++++++++++++------------ R/jmbB.R | 2 +- R/jmcsB.R | 2 +- R/jmrmlB.R | 2 +- R/jmstB.R | 2 +- R/plot.jmcsB.R | 4 ++-- R/predict.R | 4 ++-- R/print.R | 16 ++++++++-------- man/jmbB.Rd | 2 +- man/jmcsB.Rd | 2 +- man/jmrmlB.Rd | 2 +- man/jmstB.Rd | 2 +- 13 files changed, 39 insertions(+), 43 deletions(-)
Title: Discovery, Retrieval, and Analysis of Water Isotope Data
Description: The wiDB...() functions provide an interface to the public API
of the wiDB <https://github.com/SPATIAL-Lab/isoWater/blob/master/Protocol.md>:
build, check and submit queries, and receive and
unpack responses. Data analysis functions support Bayesian
inference of the source and source isotope composition of water
samples that may have experienced evaporation. Algorithms
adapted from Bowen et al. (2018, <doi:10.1007/s00442-018-4192-5>).
Author: Gabe Bowen [aut, cre]
Maintainer: Gabe Bowen <gabe.bowen@utah.edu>
Diff between isoWater versions 1.2.1 dated 2025-07-01 and 1.2.2 dated 2026-05-22
DESCRIPTION | 8 ++-- MD5 | 8 ++-- NEWS.md | 3 + R/wiDBfunctions.R | 14 +++++++- inst/doc/isoWater.html | 83 ++++++++++++++++++++++++------------------------- 5 files changed, 65 insertions(+), 51 deletions(-)
Title: Use Foreach to Parallelize via the Future Framework
Description: The 'future' package provides a unifying parallelization framework for R that supports many parallel and distributed backends <doi:10.32614/RJ-2021-048>. The 'foreach' package provides a powerful API for iterating over an R expression in parallel. The 'doFuture' package brings the best of the two together. There are two alternative ways to use this package. The recommended approach is to use 'y <- foreach(...) %dofuture% { ... }', which does not require using 'registerDoFuture()' and has many advantages over '%dopar%'. The alternative is the traditional 'foreach' approach by registering the 'foreach' adapter 'registerDoFuture()' and so that 'y <- foreach(...) %dopar% { ... }' runs in parallelizes with the 'future' framework.
Author: Henrik Bengtsson [aut, cre, cph]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between doFuture versions 1.2.1 dated 2026-02-20 and 1.2.2 dated 2026-05-22
doFuture-1.2.1/doFuture/inst/testme/test-utils.R |only doFuture-1.2.1/doFuture/tests/test-utils.R |only doFuture-1.2.2/doFuture/DESCRIPTION | 8 doFuture-1.2.2/doFuture/MD5 | 54 +++- doFuture-1.2.2/doFuture/NEWS.md | 13 - doFuture-1.2.2/doFuture/R/doFuture-package.R | 77 +++--- doFuture-1.2.2/doFuture/R/doFuture.R | 32 ++ doFuture-1.2.2/doFuture/R/doFuture2.R | 28 ++ doFuture-1.2.2/doFuture/build/vignette.rds |binary doFuture-1.2.2/doFuture/inst/doc/doFuture-1-overview.html | 96 +++++-- doFuture-1.2.2/doFuture/inst/doc/doFuture-1-overview.md.rsp | 121 ++++++---- doFuture-1.2.2/doFuture/inst/testme/test-debug.R |only doFuture-1.2.2/doFuture/inst/testme/test-dofuture-options.R |only doFuture-1.2.2/doFuture/inst/testme/test-dopar-options.R |only doFuture-1.2.2/doFuture/inst/testme/test-errors-dofuture.R |only doFuture-1.2.2/doFuture/inst/testme/test-errors-dopar.R |only doFuture-1.2.2/doFuture/inst/testme/test-foreach_dofuture,disposable.R |only doFuture-1.2.2/doFuture/inst/testme/test-foreach_dofuture,ordering.R |only doFuture-1.2.2/doFuture/inst/testme/test-foreach_dopar,disposable.R |only doFuture-1.2.2/doFuture/inst/testme/test-foreach_dopar,ordering.R |only doFuture-1.2.2/doFuture/inst/testme/test-globals-maxSize.R |only doFuture-1.2.2/doFuture/inst/testme/test-internals.R |only doFuture-1.2.2/doFuture/inst/testme/test-rng-misuse.R |only doFuture-1.2.2/doFuture/inst/testme/test-verbose.R |only doFuture-1.2.2/doFuture/inst/testme/test-with.DoPar.R | 12 doFuture-1.2.2/doFuture/man/doFuture.Rd | 80 ++++-- doFuture-1.2.2/doFuture/man/doFuture.options.Rd | 6 doFuture-1.2.2/doFuture/man/grapes-dofuture-grapes.Rd | 2 doFuture-1.2.2/doFuture/tests/test-debug.R |only doFuture-1.2.2/doFuture/tests/test-dofuture-options.R |only doFuture-1.2.2/doFuture/tests/test-dopar-options.R |only doFuture-1.2.2/doFuture/tests/test-errors-dofuture.R |only doFuture-1.2.2/doFuture/tests/test-errors-dopar.R |only doFuture-1.2.2/doFuture/tests/test-foreach_dofuture,disposable.R |only doFuture-1.2.2/doFuture/tests/test-foreach_dofuture,ordering.R |only doFuture-1.2.2/doFuture/tests/test-foreach_dopar,disposable.R |only doFuture-1.2.2/doFuture/tests/test-foreach_dopar,ordering.R |only doFuture-1.2.2/doFuture/tests/test-globals-maxSize.R |only doFuture-1.2.2/doFuture/tests/test-internals.R |only doFuture-1.2.2/doFuture/tests/test-rng-misuse.R |only doFuture-1.2.2/doFuture/tests/test-verbose.R |only doFuture-1.2.2/doFuture/vignettes/doFuture-1-overview.md.rsp | 121 ++++++---- 42 files changed, 443 insertions(+), 207 deletions(-)
Title: Binscatter Estimation and Inference
Description: Provides tools for statistical analysis using the binscatter methods developed by Cattaneo, Crump, Farrell and Feng (2024) <https://nppackages.github.io/references/Cattaneo-Crump-Farrell-Feng_2024_AER.pdf>, Cattaneo, Crump, Farrell and Feng (2025) <https://nppackages.github.io/references/Cattaneo-Crump-Farrell-Feng_2025_Stata.pdf> and Cattaneo, Crump, Farrell and Feng (2026) <https://nppackages.github.io/references/Cattaneo-Crump-Farrell-Feng_2026_RESTAT.pdf>. Binscatter provides a flexible way of describing the relationship between two variables based on partitioning/binning of the independent variable of interest. binsreg(), binsqreg() and binsglm() implement binscatter least squares regression, quantile regression and generalized linear regression respectively, with particular focus on constructing binned scatter plots. They also implement robust (pointwise and uniform) inference of regression functions and derivatives thereof. binstest() implements hypothesis test [...truncated...]
Author: Matias D. Cattaneo [aut, cre],
Richard K. Crump [aut],
Max H. Farrell [aut],
Yingjie Feng [aut]
Maintainer: Matias D. Cattaneo <matias.d.cattaneo@gmail.com>
Diff between binsreg versions 2.0 dated 2026-05-15 and 2.1 dated 2026-05-22
binsreg-2.0/binsreg/tests/testthat |only binsreg-2.0/binsreg/tests/testthat.R |only binsreg-2.1/binsreg/DESCRIPTION | 8 binsreg-2.1/binsreg/MD5 | 22 binsreg-2.1/binsreg/R/binsglm.R | 2 binsreg-2.1/binsreg/R/binspwc.R | 40 binsreg-2.1/binsreg/R/binsreg.R | 10 binsreg-2.1/binsreg/R/binsreg_functions.R | 893 +++++++++++-- binsreg-2.1/binsreg/R/binsregselect.R | 46 binsreg-2.1/binsreg/R/binstest.R | 40 binsreg-2.1/binsreg/tests/fixtures/replication-r-smoke.csv | 28 11 files changed, 907 insertions(+), 182 deletions(-)
Title: Extension to 'spatstat' for Large Datasets on a Linear Network
Description: Extension to the 'spatstat' family of packages, for analysing
large datasets of spatial points on a network. The geometrically-
corrected K function is computed using a memory-efficient
tree-based algorithm described by Rakshit, Baddeley and Nair (2019).
Author: Suman Rakshit [aut, cph] ,
Adrian Baddeley [cre, cph]
Maintainer: Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>
Diff between spatstat.Knet versions 3.1-2 dated 2024-09-05 and 3.1-3 dated 2026-05-22
DESCRIPTION | 26 ++++++++++++++------------ MD5 | 18 +++++++++--------- NEWS | 19 +++++++++++++++++++ R/Knet.R | 19 +++++++++++++------ R/Knetinhom.R | 23 +++++++++++++++-------- build/partial.rdb |binary data/wacrashes.rda |binary man/Knet.Rd | 8 ++++++-- man/Knetinhom.Rd | 6 +++++- tests/alltests.R | 5 +++++ 10 files changed, 86 insertions(+), 38 deletions(-)
Title: A Lightweight Interface Between 'igraph' and 'ggplot2' Graphics
Description: An interface to integrate 'igraph' and 'ggplot2' graphics
within a normalized coordinate system. 'RGraphSpace' implements
geometric objects based on 'ggplot2' prototypes, optimized for
the representation of large networks. The package provides three
specialized 'geoms' to translate graph data into geometric layers,
supporting customization of aesthetics and visual styles. These
'geoms' use a dual-anchor normalization approach to align layers,
required for analyses where network elements must be referenced
to a spatial map. 'RGraphSpace' aims to facilitate side-by-side
visualization of multiple graphs spatially aligned with reference
maps and images.
Author: Sysbiolab Team [aut],
Flavio Kessler [ctb],
Jonathan Back [ctb],
Lana Querne [ctb],
Victor Apolonio [ctb],
Vinicius Chagas [ctb],
Mauro Castro [cre]
Maintainer: Mauro Castro <mauro.a.castro@gmail.com>
Diff between RGraphSpace versions 1.2.0 dated 2026-04-25 and 1.3.0 dated 2026-05-22
RGraphSpace-1.2.0/RGraphSpace/vignettes/figs |only RGraphSpace-1.3.0/RGraphSpace/DESCRIPTION | 16 RGraphSpace-1.3.0/RGraphSpace/MD5 | 83 - RGraphSpace-1.3.0/RGraphSpace/NAMESPACE | 18 RGraphSpace-1.3.0/RGraphSpace/R/geom-edgespace.R | 360 ++++--- RGraphSpace-1.3.0/RGraphSpace/R/geom-graphspace.R | 104 +- RGraphSpace-1.3.0/RGraphSpace/R/geom-nodespace.R | 221 +++- RGraphSpace-1.3.0/RGraphSpace/R/gspace-classes.R | 76 + RGraphSpace-1.3.0/RGraphSpace/R/gspace-constructor.R | 20 RGraphSpace-1.3.0/RGraphSpace/R/gspace-generics.R | 5 RGraphSpace-1.3.0/RGraphSpace/R/gspace-methods.R | 207 +++- RGraphSpace-1.3.0/RGraphSpace/R/gspace-misc.R | 3 RGraphSpace-1.3.0/RGraphSpace/R/gspace-normalize.R | 1 RGraphSpace-1.3.0/RGraphSpace/R/gspace-themes.R | 4 RGraphSpace-1.3.0/RGraphSpace/R/gspace-validation.R | 13 RGraphSpace-1.3.0/RGraphSpace/R/inject-nodespace.R | 315 +++++- RGraphSpace-1.3.0/RGraphSpace/build/vignette.rds |binary RGraphSpace-1.3.0/RGraphSpace/inst/CITATION | 5 RGraphSpace-1.3.0/RGraphSpace/inst/NEWS.Rd | 20 RGraphSpace-1.3.0/RGraphSpace/inst/doc/RGraphSpace.R | 214 ---- RGraphSpace-1.3.0/RGraphSpace/inst/doc/RGraphSpace.Rmd | 355 ------- RGraphSpace-1.3.0/RGraphSpace/inst/doc/RGraphSpace.html | 472 +--------- RGraphSpace-1.3.0/RGraphSpace/man/GeomEdgeSpace.Rd | 5 RGraphSpace-1.3.0/RGraphSpace/man/GeomGraphSpace.Rd | 5 RGraphSpace-1.3.0/RGraphSpace/man/GeomNodeSpace.Rd | 5 RGraphSpace-1.3.0/RGraphSpace/man/GraphSpace-accessors.Rd | 21 RGraphSpace-1.3.0/RGraphSpace/man/GraphSpace-class.Rd | 2 RGraphSpace-1.3.0/RGraphSpace/man/GraphSpace-internal.Rd |only RGraphSpace-1.3.0/RGraphSpace/man/GraphSpace-methods.Rd | 22 RGraphSpace-1.3.0/RGraphSpace/man/RGraphSpace-package.Rd | 3 RGraphSpace-1.3.0/RGraphSpace/man/StatEdgeSpace.Rd |only RGraphSpace-1.3.0/RGraphSpace/man/StatNodeSpace.Rd |only RGraphSpace-1.3.0/RGraphSpace/man/as_colorraster.Rd | 2 RGraphSpace-1.3.0/RGraphSpace/man/dot-generate_gs_uuid.Rd |only RGraphSpace-1.3.0/RGraphSpace/man/geom_edgespace.Rd | 43 RGraphSpace-1.3.0/RGraphSpace/man/geom_graphspace.Rd | 14 RGraphSpace-1.3.0/RGraphSpace/man/geom_nodespace.Rd | 52 - RGraphSpace-1.3.0/RGraphSpace/man/getGraphSpace-methods.Rd | 10 RGraphSpace-1.3.0/RGraphSpace/man/gtoys.Rd | 1 RGraphSpace-1.3.0/RGraphSpace/man/inject_nodespace.Rd | 2 RGraphSpace-1.3.0/RGraphSpace/man/normalizeGraphSpace-methods.Rd | 1 RGraphSpace-1.3.0/RGraphSpace/man/plotGraphSpace-methods.Rd | 7 RGraphSpace-1.3.0/RGraphSpace/man/theme_gspace.Rd | 4 RGraphSpace-1.3.0/RGraphSpace/vignettes/RGraphSpace.Rmd | 355 ------- 44 files changed, 1320 insertions(+), 1746 deletions(-)
Title: General Bivariate Copula Theory and Many Utility Functions
Description: Extensive functions for bivariate copula (bicopula) computations and related operations
for bicopula theory. The lower, upper, product, and select other bicopula are implemented along
with operations including the diagonal, survival copula, dual of a copula, co-copula, and
numerical bicopula density. Level sets, horizontal and vertical sections are supported. Numerical
derivatives and inverses of a bicopula are provided through which simulation is implemented.
Bicopula composition, convex combination, asymmetry extension, and products also are provided.
Support extends to the Kendall Function as well as the Lmoments thereof. Kendall Tau,
Spearman Rho and Footrule, Gini Gamma, Blomqvist Beta, Hoeffding Phi, Schweizer-
Wolff Sigma, tail dependency, tail order, skewness, and bivariate Lmoments are implemented, and
positive/negative quadrant dependency, left (right) increasing (decreasing) are available.
Other features include Kullback-Leibler Divergence, Vuong Procedure, spectral measure, [...truncated...]
Author: William Asquith [aut, cre]
Maintainer: William Asquith <william.asquith@ttu.edu>
Diff between copBasic versions 2.2.11 dated 2025-11-03 and 2.2.14 dated 2026-05-22
copBasic-2.2.11/copBasic/inst/OtherTest.R |only copBasic-2.2.14/copBasic/DESCRIPTION | 8 copBasic-2.2.14/copBasic/MD5 | 117 ++--- copBasic-2.2.14/copBasic/NAMESPACE | 7 copBasic-2.2.14/copBasic/NEWS | 51 ++ copBasic-2.2.14/copBasic/R/EMPIRgrid.R | 21 copBasic-2.2.14/copBasic/R/EMPIRgrid_fast.R |only copBasic-2.2.14/copBasic/R/EMPIRgrid_lkup.R |only copBasic-2.2.14/copBasic/R/ORDSUMcop.R | 40 - copBasic-2.2.14/copBasic/R/ORDSUWcop.R | 40 - copBasic-2.2.14/copBasic/R/bilmoms.R | 13 copBasic-2.2.14/copBasic/R/lcomCOP.R | 3 copBasic-2.2.14/copBasic/R/lcomCOPpv.R | 36 - copBasic-2.2.14/copBasic/R/wolfCOP.R | 45 +- copBasic-2.2.14/copBasic/R/wolfCOPsamc.R |only copBasic-2.2.14/copBasic/R/wolfCOPtest.R |only copBasic-2.2.14/copBasic/build/partial.rdb |binary copBasic-2.2.14/copBasic/data/wolfCOPtest_data_smlsam.RData |only copBasic-2.2.14/copBasic/man/EMPIRcop.Rd | 27 - copBasic-2.2.14/copBasic/man/EMPIRgrid.Rd | 270 ++++++------ copBasic-2.2.14/copBasic/man/EMPIRgrid_fast.Rd |only copBasic-2.2.14/copBasic/man/EMPIRgrid_lkup.Rd |only copBasic-2.2.14/copBasic/man/EMPIRgridder.Rd | 4 copBasic-2.2.14/copBasic/man/EMPIRgridder2.Rd | 2 copBasic-2.2.14/copBasic/man/EMPIRgridderinv.Rd | 2 copBasic-2.2.14/copBasic/man/EMPIRgridderinv2.Rd | 2 copBasic-2.2.14/copBasic/man/EuvCOP.Rd | 2 copBasic-2.2.14/copBasic/man/EvuCOP.Rd | 4 copBasic-2.2.14/copBasic/man/HRcop.Rd | 2 copBasic-2.2.14/copBasic/man/JOcopB5.Rd | 2 copBasic-2.2.14/copBasic/man/MOcop.Rd | 4 copBasic-2.2.14/copBasic/man/ORDSUMcop.Rd | 8 copBasic-2.2.14/copBasic/man/PARETOcop.Rd | 2 copBasic-2.2.14/copBasic/man/PSP.Rd | 2 copBasic-2.2.14/copBasic/man/RAYcop.Rd | 4 copBasic-2.2.14/copBasic/man/bicoploc.Rd | 4 copBasic-2.2.14/copBasic/man/bilmoms.Rd | 42 - copBasic-2.2.14/copBasic/man/copBasic-package.Rd | 33 - copBasic-2.2.14/copBasic/man/copBasic.fitpara.Rd | 4 copBasic-2.2.14/copBasic/man/densityCOP.Rd | 2 copBasic-2.2.14/copBasic/man/duCOP.Rd | 4 copBasic-2.2.14/copBasic/man/figures/lmrdiaT34wolfP.jpg |only copBasic-2.2.14/copBasic/man/figures/lmrdiaT34wolfP.pdf |only copBasic-2.2.14/copBasic/man/footCOP.Rd | 2 copBasic-2.2.14/copBasic/man/hoefCOP.Rd | 2 copBasic-2.2.14/copBasic/man/isCOP.permsym.Rd | 2 copBasic-2.2.14/copBasic/man/joint.curvesCOP2.Rd | 2 copBasic-2.2.14/copBasic/man/jointCOP.Rd | 2 copBasic-2.2.14/copBasic/man/kfuncCOP.Rd | 6 copBasic-2.2.14/copBasic/man/kfuncCOPlmoms.Rd | 2 copBasic-2.2.14/copBasic/man/lcomCOP.Rd | 6 copBasic-2.2.14/copBasic/man/lcomCOPpv.Rd | 30 - copBasic-2.2.14/copBasic/man/med.regressCOP.Rd | 4 copBasic-2.2.14/copBasic/man/med.regressCOP2.Rd | 2 copBasic-2.2.14/copBasic/man/prod2COP.Rd | 2 copBasic-2.2.14/copBasic/man/simCOPmicro.Rd | 2 copBasic-2.2.14/copBasic/man/statTn.Rd | 2 copBasic-2.2.14/copBasic/man/surCOP.Rd | 2 copBasic-2.2.14/copBasic/man/tailconCOP.Rd | 2 copBasic-2.2.14/copBasic/man/taildepCOP.Rd | 2 copBasic-2.2.14/copBasic/man/tailordCOP.Rd | 6 copBasic-2.2.14/copBasic/man/vuongCOP.Rd | 2 copBasic-2.2.14/copBasic/man/wolfCOP.Rd | 132 ++++- copBasic-2.2.14/copBasic/man/wolfCOPsamc.Rd |only copBasic-2.2.14/copBasic/man/wolfCOPtest.Rd |only copBasic-2.2.14/copBasic/man/wolfCOPtest_data_smlsam.Rd |only 66 files changed, 610 insertions(+), 409 deletions(-)
Title: Occurrence Data Cleaning
Description: Flags and checks occurrence data that are in Darwin Core
format. The package includes generic functions and data as well as
some that are specific to bees. This package is meant to build upon
and be complimentary to other excellent occurrence cleaning packages,
including 'bdc' and 'CoordinateCleaner'. This package uses datasets
from several sources and particularly from the Discover Life Website,
created by Ascher and Pickering (2020). For further information,
please see the original publication and package website. Publication
- Dorey et al. (2023) <doi:10.1101/2023.06.30.547152> and package
website - Dorey et al. (2023) <https://github.com/jbdorey/BeeBDC>.
Author: James B. Dorey [aut, cre, cph] ,
Robert L. O'Reilly [aut] ,
Silas Bossert [aut] ,
Erica E. Fischer [aut]
Maintainer: James B. Dorey <jbdorey@me.com>
Diff between BeeBDC versions 1.3.3 dated 2026-02-06 and 1.3.4 dated 2026-05-22
DESCRIPTION | 8 - MD5 | 32 ++--- NAMESPACE | 39 ------ NEWS.md | 18 ++ R/ColTypeR.R | 7 - R/HarmoniseR.R | 228 ++++++++++++++++++++++++++++++++++--- R/beesTaxonomy.R | 5 R/ggRichnessWrapper.R | 45 ++++++- R/jbd_create_figures.R | 12 - R/plotFlagSummary.R | 5 README.md | 213 +++++++++++++++++++++------------- inst/CITATION | 6 man/ColTypeR.Rd | 14 +- man/atlasDownloader.Rd | 2 man/beesTaxonomy.Rd | 5 man/harmoniseR.Rd | 13 ++ tests/testthat/test-readr_BeeBDC.R | 48 +++---- 17 files changed, 485 insertions(+), 215 deletions(-)
Title: Double Generalized Gamma Regression Models
Description: Fits double generalized Gamma regression models from a Bayesian perspective, where both the mean and shape parameters are modeled simultaneously using flexible link functions. The methodology is based on Cepeda-Cuervo and Urdinola (2012) <doi:10.1080/03610918.2011.600500> and extended in Cepeda-Cuervo (2026), 'Double Generalized Linear Models: Likelihood and Bayesian Methods' (ISBN: 9781041169970). The package provides parameter estimation, model fitting, and model comparison tools, including Akaike Information Criterion (AIC) and Bayesian Information Criterion (BIC).
Author: Arturo Camargo-Lozano [aut, cre],
Edilberto Cepeda-Cuervo [aut]
Maintainer: Arturo Camargo-Lozano <bacamargol@unal.edu.co>
Diff between Bayesiangammareg versions 0.1.0 dated 2020-02-06 and 0.1.1 dated 2026-05-22
DESCRIPTION | 23 +++++++++++------------ MD5 | 24 ++++++++++++------------ R/GammaIdentity.R | 14 +++++++++----- R/GammaLog.R | 15 +++++++++------ R/criteria.R | 27 +++++++++++++++++++-------- R/gammaresiduals.R | 3 +-- R/summary.Bayesiangammareg.R | 5 ++--- man/Bayesiangammareg.Rd | 13 +++++++------ man/GammaIdentity.Rd | 23 ++--------------------- man/GammaLog.Rd | 17 +++++++++-------- man/criteria.Rd | 8 ++++---- man/gammaresiduals.Rd | 4 ++-- man/summary.Bayesiangammareg.Rd | 2 +- 13 files changed, 88 insertions(+), 90 deletions(-)
More information about Bayesiangammareg at CRAN
Permanent link
Title: Model Wrappers for Tree-Based Models
Description: Bindings for additional tree-based model engines for use with
the 'parsnip' package. Models include gradient boosted decision trees
with 'LightGBM' (Ke et al, 2017.), conditional inference trees and
conditional random forests with 'partykit' (Hothorn and Zeileis, 2015.
and Hothorn et al, 2006. <doi:10.1198/106186006X133933>), and
accelerated oblique random forests with 'aorsf' (Jaeger et al, 2022
<doi:10.5281/zenodo.7116854>).
Author: Daniel Falbel [aut],
Athos Damiani [aut],
Roel M. Hogervorst [aut] ,
Max Kuhn [aut] ,
Simon Couch [aut] ,
Emil Hvitfeldt [aut, cre] ,
Posit Software, PBC [cph, fnd]
Maintainer: Emil Hvitfeldt <emil.hvitfeldt@posit.co>
Diff between bonsai versions 0.4.0 dated 2025-06-25 and 0.4.1 dated 2026-05-21
DESCRIPTION | 10 - MD5 | 24 ++-- NAMESPACE | 1 NEWS.md | 10 + R/catboost.R | 75 +++++++++++++ R/catboost_data.R | 29 +++++ README.md | 2 build/partial.rdb |binary build/vignette.rds |binary man/bonsai-package.Rd | 2 man/catboost_helpers.Rd | 3 man/figures/logo.png |binary tests/testthat/test-catboost.R | 224 +++++++++++++++++++++++++++++++++++++++++ 13 files changed, 360 insertions(+), 20 deletions(-)
Title: A Common API to Clustering
Description: A common interface to specifying clustering models, in the
same style as 'parsnip'. Creates unified interface across different
functions and computational engines.
Author: Emil Hvitfeldt [aut, cre] ,
Kelly Bodwin [aut],
Posit Software, PBC [cph, fnd]
Maintainer: Emil Hvitfeldt <emil.hvitfeldt@posit.co>
Diff between tidyclust versions 0.2.4 dated 2025-01-27 and 0.3.0 dated 2026-05-21
tidyclust-0.2.4/tidyclust/R/append.R |only tidyclust-0.2.4/tidyclust/R/pull.R |only tidyclust-0.2.4/tidyclust/man/figures/logo.svg |only tidyclust-0.2.4/tidyclust/tests/testthat/_snaps/fiting.md |only tidyclust-0.2.4/tidyclust/tests/testthat/test-fiting.R |only tidyclust-0.3.0/tidyclust/DESCRIPTION | 43 tidyclust-0.3.0/tidyclust/LICENSE | 2 tidyclust-0.3.0/tidyclust/MD5 | 361 tidyclust-0.3.0/tidyclust/NAMESPACE | 44 tidyclust-0.3.0/tidyclust/NEWS.md | 52 tidyclust-0.3.0/tidyclust/R/aaa.R | 7 tidyclust-0.3.0/tidyclust/R/arguments.R | 26 tidyclust-0.3.0/tidyclust/R/augment.R | 34 tidyclust-0.3.0/tidyclust/R/butcher.R |only tidyclust-0.3.0/tidyclust/R/cluster_spec.R | 7 tidyclust-0.3.0/tidyclust/R/control.R | 15 tidyclust-0.3.0/tidyclust/R/convert_data.R | 93 tidyclust-0.3.0/tidyclust/R/db_clust.R |only tidyclust-0.3.0/tidyclust/R/db_clust_data.R |only tidyclust-0.3.0/tidyclust/R/db_clust_dbscan.R |only tidyclust-0.3.0/tidyclust/R/db_clust_hdbscan.R |only tidyclust-0.3.0/tidyclust/R/dials-params.R | 154 tidyclust-0.3.0/tidyclust/R/engine_docs.R | 14 tidyclust-0.3.0/tidyclust/R/engines.R | 22 tidyclust-0.3.0/tidyclust/R/extract.R | 4 tidyclust-0.3.0/tidyclust/R/extract_centroids.R | 17 tidyclust-0.3.0/tidyclust/R/extract_cluster_assignment.R | 89 tidyclust-0.3.0/tidyclust/R/extract_fit_summary.R | 294 tidyclust-0.3.0/tidyclust/R/extract_parameter_set_dials.R | 6 tidyclust-0.3.0/tidyclust/R/finalize.R | 31 tidyclust-0.3.0/tidyclust/R/fit.R | 117 tidyclust-0.3.0/tidyclust/R/fit_helpers.R | 79 tidyclust-0.3.0/tidyclust/R/gm_clust.R |only tidyclust-0.3.0/tidyclust/R/gm_clust_data.R |only tidyclust-0.3.0/tidyclust/R/gm_clust_mclust.R |only tidyclust-0.3.0/tidyclust/R/hier_clust.R | 38 tidyclust-0.3.0/tidyclust/R/hier_clust_data.R | 9 tidyclust-0.3.0/tidyclust/R/k_means.R | 22 tidyclust-0.3.0/tidyclust/R/k_means_ClusterR.R | 12 tidyclust-0.3.0/tidyclust/R/k_means_clustMixType.R | 12 tidyclust-0.3.0/tidyclust/R/k_means_klaR.R | 12 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tidyclust-0.3.0/tidyclust/tests/testthat/test-workflows.R | 122 tidyclust-0.3.0/tidyclust/vignettes |only 224 files changed, 14471 insertions(+), 6480 deletions(-)
Title: Read and Write 'las' and 'laz' Binary File Formats Used for
Remote Sensing Data
Description: Read and write 'las' and 'laz' binary file formats. The LAS file format is a public file format for the interchange of 3-dimensional point cloud data between data users. The LAS specifications are approved by the American Society for Photogrammetry and Remote Sensing <https://community.asprs.org/leadership-restricted/leadership-content/public-documents/standards>. The LAZ file format is an open and lossless compression scheme for binary LAS format versions 1.0 to 1.4 <https://laszip.org/>.
Author: Jean-Romain Roussel [aut, cre, cph],
Florian De Boissieu [aut, ctb] ,
Martin Isenburg [cph] ,
David Auty [ctb] ,
Pierrick Marie [ctb] ,
Tiago de Conto [ctb]
Maintainer: Jean-Romain Roussel <info@r-lidar.com>
Diff between rlas versions 1.9.1 dated 2026-05-14 and 1.9.2 dated 2026-05-21
DESCRIPTION | 6 - MD5 | 12 +- NEWS.md | 4 R/readLAS.r | 3 src/LASzip/lasreaditemcompressed_v4.cpp | 148 ++++++++++++++++-------------- src/LASzip/laswriteitemcompressed_v3.cpp | 152 ++++++++++++++++--------------- src/LASzip/laswriteitemcompressed_v4.cpp | 152 ++++++++++++++++--------------- 7 files changed, 259 insertions(+), 218 deletions(-)
Title: Variational Autoencoders for Heterogeneous Tabular Data
Description: Build and train a variational autoencoder (VAE) for mixed-type
tabular data (continuous, binary, categorical).
Models are implemented using 'TensorFlow' and 'Keras' via the 'reticulate'
interface, enabling reproducible VAE training for heterogeneous tabular
datasets.
Author: Sarah Milligan [aut, cre]
Maintainer: Sarah Milligan <slm1999@bu.edu>
Diff between autotab versions 1.0 dated 2026-03-25 and 1.0.1 dated 2026-05-21
DESCRIPTION | 7 ++++--- MD5 | 17 ++++++++++------- R/data.R |only R/decoder.R | 19 ++++++++++++++++--- R/latent_sampling.R | 10 ++++------ R/loss.R | 3 +-- README.md | 14 ++++++-------- data |only man/Latent_sample.Rd | 10 ++++------ man/data_example.Rd |only man/decoder_model.Rd | 4 ++-- 11 files changed, 47 insertions(+), 37 deletions(-)
Title: Stepwise Regression Analysis
Description: Stepwise regression is a statistical technique used for model selection. This package streamlines stepwise regression analysis by supporting multiple regression types(linear, Cox, logistic, Poisson, Gamma, and negative binomial), incorporating popular selection strategies(forward, backward, bidirectional, and subset), and offering essential metrics. It enables users to apply multiple selection strategies and metrics in a single function call, visualize variable selection processes, and export results in various formats. StepReg offers a data-splitting option to address potential issues with invalid statistical inference and a randomized forward selection option to avoid overfitting. We validated StepReg's accuracy using public datasets within the SAS software environment. For an interactive web interface, users can install the companion 'StepRegShiny' package.
Author: Junhui Li [cre] ,
Junhui Li [aut],
Kai Hu [aut],
Xiaohuan Lu [aut],
Wenxin Liu [aut],
Lihua Julie Zhu [aut]
Maintainer: Junhui Li <junhui.li11@umassmed.edu>
Diff between StepReg versions 1.6.4 dated 2026-05-14 and 1.6.5 dated 2026-05-21
DESCRIPTION | 8 ++-- MD5 | 12 +++--- R/performance.R | 3 + R/stepwise.R | 2 - R/stepwiseUtils.R | 90 +++++++++++++++++++++++++++++--------------------- inst/doc/StepReg.html | 60 ++++++++++++++++----------------- man/performance.Rd | 3 + 7 files changed, 98 insertions(+), 80 deletions(-)
Title: Manipulation Testing Based on Density Discontinuity
Description: Density discontinuity testing (a.k.a. manipulation testing) is commonly employed in regression discontinuity designs and other program evaluation settings to detect perfect self-selection (manipulation) around a cutoff where treatment/policy assignment changes. This package implements manipulation testing procedures using local polynomial density estimators: rddensity() constructs test statistics and p-values given a prespecified cutoff, rdbwdensity() performs data-driven bandwidth selection, and rdplotdensity() constructs density plots.
Author: Matias D. Cattaneo [aut, cre],
Michael Jansson [aut],
Xinwei Ma [aut]
Maintainer: Matias D. Cattaneo <matias.d.cattaneo@gmail.com>
Diff between rddensity versions 2.6 dated 2024-10-06 and 3.0 dated 2026-05-21
DESCRIPTION | 40 ++++++++++++++++++++-------------------- MD5 | 25 ++++++++++++++----------- R/rdbwdensity.R | 44 +++++++++++++++++++++++--------------------- R/rddensity-package.R | 6 +++--- R/rddensity.R | 38 +++++++++++++++++++++----------------- R/rddensity_fun.R | 34 +++++++++++++++++++++++++++++++--- R/rdplotdensity.R | 6 +++--- build/partial.rdb |binary man/rdbwdensity.Rd | 6 +++--- man/rddensity-package.Rd | 6 +++--- man/rddensity.Rd | 6 +++--- man/rdplotdensity.Rd | 6 +++--- tests |only 13 files changed, 127 insertions(+), 90 deletions(-)
Title: Assessment of Regression Models Performance
Description: Utilities for computing measures to assess model quality,
which are not directly provided by R's 'base' or 'stats' packages.
These include e.g. measures like r-squared, intraclass correlation
coefficient (Nakagawa, Johnson & Schielzeth (2017)
<doi:10.1098/rsif.2017.0213>), root mean squared error or functions to
check models for overdispersion, singularity or zero-inflation and
more. Functions apply to a large variety of regression models,
including generalized linear models, mixed effects models and Bayesian
models. References: Lüdecke et al. (2021) <doi:10.21105/joss.03139>.
Author: Daniel Luedecke [aut, cre] ,
Dominique Makowski [aut, ctb] ,
Mattan S. Ben-Shachar [aut, ctb] ,
Indrajeet Patil [aut, ctb] ,
Philip Waggoner [aut, ctb] ,
Brenton M. Wiernik [aut, ctb] ,
Remi Theriault [aut, ctb] ,
Vincent Arel-Bundock [ctb] ,
Martin J [...truncated...]
Maintainer: Daniel Luedecke <officialeasystats@gmail.com>
Diff between performance versions 0.16.0 dated 2026-02-04 and 0.17.0 dated 2026-05-21
DESCRIPTION | 12 MD5 | 103 +++---- NAMESPACE | 1 NEWS.md | 28 ++ R/check_collinearity.R | 53 +++ R/check_homogeneity.R | 2 R/check_model.R | 28 ++ R/check_outliers.R | 6 R/check_predictions.R | 80 ++--- R/performance_cv.R | 282 +++++++++++---------- R/test_likelihoodratio.R | 15 - R/test_performance.R | 15 - build/partial.rdb |binary man/check_autocorrelation.Rd | 22 - man/check_collinearity.Rd | 22 - man/check_convergence.Rd | 22 - man/check_heteroscedasticity.Rd | 22 - man/check_homogeneity.Rd | 22 - man/check_model.Rd | 51 ++- man/check_outliers.Rd | 32 +- man/check_overdispersion.Rd | 22 - man/check_predictions.Rd | 29 +- man/check_singularity.Rd | 22 - man/check_zeroinflation.Rd | 22 - man/compare_performance.Rd | 2 man/figures/card.png |binary man/figures/figure_workflow.png |binary man/figures/logo.png |binary man/figures/pp_check.png |binary man/figures/unnamed-chunk-14-1.png |binary man/figures/unnamed-chunk-15-1.png |binary man/figures/unnamed-chunk-20-1.png |binary man/figures/unnamed-chunk-21-1.png |binary man/performance-package.Rd | 1 man/performance_accuracy.Rd | 2 man/performance_cv.Rd | 6 man/r2_mlm.Rd | 2 man/reexports.Rd | 2 man/test_performance.Rd | 15 - tests/testthat/test-check_autocorrelation_simres.R | 4 tests/testthat/test-check_collinearity.R | 110 ++++++++ tests/testthat/test-check_homogeneity.R | 12 tests/testthat/test-check_normality.R | 2 tests/testthat/test-check_outliers.R | 2 tests/testthat/test-check_overdispersion.R | 18 - tests/testthat/test-check_predictions.R | 52 +++ tests/testthat/test-check_residuals.R | 2 tests/testthat/test-check_zeroinflation.R | 25 - tests/testthat/test-discovr_book.R |only tests/testthat/test-glmmPQL.R | 2 tests/testthat/test-performance_cv.R | 27 +- tests/testthat/test-r2_mcfadden.R | 4 tests/testthat/test-test_likelihoodratio.R | 71 +++++ 53 files changed, 827 insertions(+), 447 deletions(-)
Title: Model Evaluation and Analysis
Description: Analyses species distribution models and evaluates their performance. It includes functions for variation partitioning, extracting variable importance, computing several metrics of model discrimination and calibration performance, optimizing prediction thresholds based on a number of criteria, performing multivariate environmental similarity surface (MESS) analysis, and displaying various analytical plots. Initially described in Barbosa et al. (2013) <doi:10.1111/ddi.12100>.
Author: A. Marcia Barbosa [aut, cre],
Jennifer A. Brown [aut],
Alberto Jimenez-Valverde [aut],
Raimundo Real [aut],
Oswald van Ginkel [ctb],
Jurica Levatic [ctb],
Victoria Formoso-Freire [ctb],
Andres Baselga [ctb],
Carola Gomez-Rodriguez [ctb],
Carlos C. Ra [...truncated...]
Maintainer: A. Marcia Barbosa <ana.marcia.barbosa@gmail.com>
Diff between modEvA versions 3.41 dated 2026-01-09 and 3.45 dated 2026-05-21
DESCRIPTION | 16 +-- MD5 | 98 ++++++++++--------- NAMESPACE | 10 + NEWS.md | 113 +++++++++++++++++++++- R/AUC.R | 33 +++++- R/Boyce.R | 67 +++++++------ R/HLfit.R | 203 ++++++++++++++++++++++------------------ R/Miller.R |only R/MillerCalib.R | 48 --------- R/evaluate.R | 8 - R/getBins.R | 246 ++++++++++++++++++++++++++++++------------------- R/lollipop.R | 2 R/modEvAmethods.R | 17 +-- R/multModEv.R | 2 R/optiPair.R | 2 R/optiThresh.R | 2 R/plotGLM.R | 162 ++++++++++++++++---------------- R/poMeasures.R |only R/predDensity.R | 236 ++++++++++++++++++++++++----------------------- R/predPlot.R | 80 +++++++-------- R/threshMeasures.R | 33 ++++-- data/rotif.mods.rda |binary inst/CITATION | 67 ++++++++++--- man/AUC.Rd | 31 ++++-- man/Boyce.Rd | 37 ++++--- man/Dsquared.Rd | 4 man/HLfit.Rd | 40 +++---- man/Miller.Rd |only man/MillerCalib.Rd | 102 ++++---------------- man/RMSE.Rd | 4 man/RsqGLM.Rd | 4 man/applyThreshold.Rd | 2 man/confusionLabel.Rd | 2 man/confusionMatrix.Rd | 2 man/errorMeasures.Rd | 118 +++++++++++------------ man/getBins.Rd | 49 ++++----- man/getModEqn.Rd | 4 man/getThreshold.Rd | 2 man/inputMunch.Rd | 4 man/logLike.Rd | 132 +++++++++++++------------- man/lollipop.Rd | 6 - man/modEvA-package.Rd | 33 +++--- man/multModEv.Rd | 6 - man/optiPair.Rd | 4 man/optiThresh.Rd | 4 man/plotGLM.Rd | 4 man/poMeasures.Rd |only man/predDensity.Rd | 16 +-- man/predPlot.Rd | 162 ++++++++++++++++---------------- man/pseudoRsq.Rd | 14 +- man/similarity.Rd | 2 man/threshMeasures.Rd | 55 ++++++++-- 52 files changed, 1272 insertions(+), 1016 deletions(-)
Title: Feature Selection for 'mlr3'
Description: Feature selection package of the 'mlr3' ecosystem. It selects
the optimal feature set for any 'mlr3' learner. The package works with
several optimization algorithms e.g. Random Search, Recursive Feature
Elimination, and Genetic Search. Moreover, it can automatically
optimize learners and estimate the performance of optimized feature
sets with nested resampling.
Author: Marc Becker [aut, cre] ,
Patrick Schratz [aut] ,
Michel Lang [aut] ,
Bernd Bischl [aut] ,
John Zobolas [aut]
Maintainer: Marc Becker <marcbecker@posteo.de>
Diff between mlr3fselect versions 1.5.1 dated 2026-03-18 and 1.6.0 dated 2026-05-21
mlr3fselect-1.5.1/mlr3fselect/tests/testthat/helper_rush.R |only mlr3fselect-1.6.0/mlr3fselect/DESCRIPTION | 13 mlr3fselect-1.6.0/mlr3fselect/MD5 | 233 +++---- mlr3fselect-1.6.0/mlr3fselect/NEWS.md | 7 mlr3fselect-1.6.0/mlr3fselect/R/ArchiveAsyncFSelect.R | 44 - mlr3fselect-1.6.0/mlr3fselect/R/ArchiveAsyncFSelectFrozen.R | 34 - mlr3fselect-1.6.0/mlr3fselect/R/ArchiveBatchFSelect.R | 39 - mlr3fselect-1.6.0/mlr3fselect/R/AutoFSelector.R | 83 +- mlr3fselect-1.6.0/mlr3fselect/R/CallbackAsyncFSelect.R | 95 +- mlr3fselect-1.6.0/mlr3fselect/R/CallbackBatchFSelect.R | 68 +- mlr3fselect-1.6.0/mlr3fselect/R/ContextAsyncFSelect.R | 9 mlr3fselect-1.6.0/mlr3fselect/R/ContextBatchFSelect.R | 11 mlr3fselect-1.6.0/mlr3fselect/R/EnsembleFSResult.R | 229 ++++--- mlr3fselect-1.6.0/mlr3fselect/R/FSelectInstanceAsyncMultiCrit.R | 22 mlr3fselect-1.6.0/mlr3fselect/R/FSelectInstanceAsyncSingleCrit.R | 19 mlr3fselect-1.6.0/mlr3fselect/R/FSelectInstanceBatchMultiCrit.R | 16 mlr3fselect-1.6.0/mlr3fselect/R/FSelectInstanceBatchSingleCrit.R | 28 mlr3fselect-1.6.0/mlr3fselect/R/FSelector.R | 20 mlr3fselect-1.6.0/mlr3fselect/R/FSelectorAsync.R | 13 mlr3fselect-1.6.0/mlr3fselect/R/FSelectorAsyncDesignPoints.R | 4 mlr3fselect-1.6.0/mlr3fselect/R/FSelectorAsyncExhaustiveSearch.R | 19 mlr3fselect-1.6.0/mlr3fselect/R/FSelectorAsyncFromOptimizerAsync.R | 14 mlr3fselect-1.6.0/mlr3fselect/R/FSelectorAsyncRandomSearch.R | 4 mlr3fselect-1.6.0/mlr3fselect/R/FSelectorBatch.R | 37 - mlr3fselect-1.6.0/mlr3fselect/R/FSelectorBatchDesignPoints.R | 4 mlr3fselect-1.6.0/mlr3fselect/R/FSelectorBatchExhaustiveSearch.R | 19 mlr3fselect-1.6.0/mlr3fselect/R/FSelectorBatchFromOptimizerBatch.R | 9 mlr3fselect-1.6.0/mlr3fselect/R/FSelectorBatchGeneticSearch.R | 20 mlr3fselect-1.6.0/mlr3fselect/R/FSelectorBatchRFE.R | 68 +- mlr3fselect-1.6.0/mlr3fselect/R/FSelectorBatchRFECV.R | 46 - mlr3fselect-1.6.0/mlr3fselect/R/FSelectorBatchRandomSearch.R | 7 mlr3fselect-1.6.0/mlr3fselect/R/FSelectorBatchSequential.R | 53 - mlr3fselect-1.6.0/mlr3fselect/R/FSelectorBatchShadowVariableSearch.R | 78 +- mlr3fselect-1.6.0/mlr3fselect/R/ObjectiveFSelect.R | 16 mlr3fselect-1.6.0/mlr3fselect/R/ObjectiveFSelectAsync.R | 41 + mlr3fselect-1.6.0/mlr3fselect/R/ObjectiveFSelectBatch.R | 36 - mlr3fselect-1.6.0/mlr3fselect/R/assertions.R | 38 - mlr3fselect-1.6.0/mlr3fselect/R/auto_fselector.R | 5 mlr3fselect-1.6.0/mlr3fselect/R/bibentries.R | 27 mlr3fselect-1.6.0/mlr3fselect/R/embedded_ensemble_fselect.R | 19 mlr3fselect-1.6.0/mlr3fselect/R/ensemble_fselect.R | 30 mlr3fselect-1.6.0/mlr3fselect/R/extract_inner_fselect_archives.R | 32 mlr3fselect-1.6.0/mlr3fselect/R/extract_inner_fselect_results.R | 34 - mlr3fselect-1.6.0/mlr3fselect/R/faggregate.R | 27 mlr3fselect-1.6.0/mlr3fselect/R/fselect.R | 20 mlr3fselect-1.6.0/mlr3fselect/R/fselect_nested.R | 5 mlr3fselect-1.6.0/mlr3fselect/R/helper.R | 9 mlr3fselect-1.6.0/mlr3fselect/R/mlr_callbacks.R | 53 + mlr3fselect-1.6.0/mlr3fselect/R/mlr_fselectors.R | 27 mlr3fselect-1.6.0/mlr3fselect/R/sugar.R | 19 mlr3fselect-1.6.0/mlr3fselect/README.md | 26 mlr3fselect-1.6.0/mlr3fselect/build/partial.rdb |binary mlr3fselect-1.6.0/mlr3fselect/inst/testthat/helper_expectations.R | 7 mlr3fselect-1.6.0/mlr3fselect/inst/testthat/helper_fselector.R | 6 mlr3fselect-1.6.0/mlr3fselect/inst/testthat/helper_misc.R | 42 - mlr3fselect-1.6.0/mlr3fselect/man/ArchiveAsyncFSelect.Rd | 3 mlr3fselect-1.6.0/mlr3fselect/man/ArchiveBatchFSelect.Rd | 11 mlr3fselect-1.6.0/mlr3fselect/man/AutoFSelector.Rd | 19 mlr3fselect-1.6.0/mlr3fselect/man/CallbackAsyncFSelect.Rd | 3 mlr3fselect-1.6.0/mlr3fselect/man/CallbackBatchFSelect.Rd | 6 mlr3fselect-1.6.0/mlr3fselect/man/ContextBatchFSelect.Rd | 3 mlr3fselect-1.6.0/mlr3fselect/man/FSelectInstanceAsyncMultiCrit.Rd | 13 mlr3fselect-1.6.0/mlr3fselect/man/FSelectInstanceAsyncSingleCrit.Rd | 10 mlr3fselect-1.6.0/mlr3fselect/man/FSelectInstanceBatchMultiCrit.Rd | 10 mlr3fselect-1.6.0/mlr3fselect/man/FSelectInstanceBatchSingleCrit.Rd | 19 mlr3fselect-1.6.0/mlr3fselect/man/FSelector.Rd | 6 mlr3fselect-1.6.0/mlr3fselect/man/FSelectorAsync.Rd | 15 mlr3fselect-1.6.0/mlr3fselect/man/FSelectorAsyncFromOptimizerAsync.Rd | 6 mlr3fselect-1.6.0/mlr3fselect/man/FSelectorBatch.Rd | 31 mlr3fselect-1.6.0/mlr3fselect/man/ObjectiveFSelect.Rd | 3 mlr3fselect-1.6.0/mlr3fselect/man/ObjectiveFSelectAsync.Rd | 3 mlr3fselect-1.6.0/mlr3fselect/man/ObjectiveFSelectBatch.Rd | 3 mlr3fselect-1.6.0/mlr3fselect/man/auto_fselector.Rd | 15 mlr3fselect-1.6.0/mlr3fselect/man/callback_async_fselect.Rd | 3 mlr3fselect-1.6.0/mlr3fselect/man/callback_batch_fselect.Rd | 3 mlr3fselect-1.6.0/mlr3fselect/man/embedded_ensemble_fselect.Rd | 20 mlr3fselect-1.6.0/mlr3fselect/man/ensemble_fs_result.Rd | 93 +- mlr3fselect-1.6.0/mlr3fselect/man/ensemble_fselect.Rd | 27 mlr3fselect-1.6.0/mlr3fselect/man/extract_inner_fselect_archives.Rd | 8 mlr3fselect-1.6.0/mlr3fselect/man/extract_inner_fselect_results.Rd | 6 mlr3fselect-1.6.0/mlr3fselect/man/fselect.Rd | 18 mlr3fselect-1.6.0/mlr3fselect/man/fsi.Rd | 3 mlr3fselect-1.6.0/mlr3fselect/man/fsi_async.Rd | 3 mlr3fselect-1.6.0/mlr3fselect/man/mlr3fselect.async_freeze_archive.Rd | 3 mlr3fselect-1.6.0/mlr3fselect/man/mlr3fselect.svm_rfe.Rd | 2 mlr3fselect-1.6.0/mlr3fselect/man/mlr_fselectors_genetic_search.Rd | 2 mlr3fselect-1.6.0/mlr3fselect/man/mlr_fselectors_random_search.Rd | 3 mlr3fselect-1.6.0/mlr3fselect/man/mlr_fselectors_rfe.Rd | 15 mlr3fselect-1.6.0/mlr3fselect/man/mlr_fselectors_rfecv.Rd | 21 mlr3fselect-1.6.0/mlr3fselect/man/mlr_fselectors_sequential.Rd | 6 mlr3fselect-1.6.0/mlr3fselect/man/mlr_fselectors_shadow_variable_search.Rd | 3 mlr3fselect-1.6.0/mlr3fselect/tests/testthat/helper.R | 5 mlr3fselect-1.6.0/mlr3fselect/tests/testthat/setup.R | 14 mlr3fselect-1.6.0/mlr3fselect/tests/testthat/teardown.R | 4 mlr3fselect-1.6.0/mlr3fselect/tests/testthat/test_ArchiveAsyncFSelect.R | 21 mlr3fselect-1.6.0/mlr3fselect/tests/testthat/test_ArchiveBatchFSelect.R | 322 ++++++++-- mlr3fselect-1.6.0/mlr3fselect/tests/testthat/test_AutoFSelector.R | 94 ++ mlr3fselect-1.6.0/mlr3fselect/tests/testthat/test_CallbackAsyncFSelect.R | 254 ++++--- mlr3fselect-1.6.0/mlr3fselect/tests/testthat/test_FSelectInstanceMultiCrit.R | 21 mlr3fselect-1.6.0/mlr3fselect/tests/testthat/test_FSelectInstanceSingleCrit.R | 34 - mlr3fselect-1.6.0/mlr3fselect/tests/testthat/test_FSelectorAsyncDesignPoints.R | 3 mlr3fselect-1.6.0/mlr3fselect/tests/testthat/test_FSelectorBatchDesignPoints.R | 6 mlr3fselect-1.6.0/mlr3fselect/tests/testthat/test_FSelectorExhaustiveSearch.R | 2 mlr3fselect-1.6.0/mlr3fselect/tests/testthat/test_FSelectorRFE.R | 37 - mlr3fselect-1.6.0/mlr3fselect/tests/testthat/test_FSelectorRFECV.R | 28 mlr3fselect-1.6.0/mlr3fselect/tests/testthat/test_FSelectorShadowVariableSearch.R | 10 mlr3fselect-1.6.0/mlr3fselect/tests/testthat/test_ObjectiveFSelect.R | 90 +- mlr3fselect-1.6.0/mlr3fselect/tests/testthat/test_ObjectiveFSelectAsync.R | 61 + mlr3fselect-1.6.0/mlr3fselect/tests/testthat/test_auto_fselector.R | 28 mlr3fselect-1.6.0/mlr3fselect/tests/testthat/test_embedded_ensemble_fselect.R | 16 mlr3fselect-1.6.0/mlr3fselect/tests/testthat/test_ensemble_fselect.R | 112 ++- mlr3fselect-1.6.0/mlr3fselect/tests/testthat/test_extract_inner_fselect_archives.R | 293 ++++++++- mlr3fselect-1.6.0/mlr3fselect/tests/testthat/test_extract_inner_fselect_result.R | 306 ++++++++- mlr3fselect-1.6.0/mlr3fselect/tests/testthat/test_fselect.R | 30 mlr3fselect-1.6.0/mlr3fselect/tests/testthat/test_fselect_nested.R | 12 mlr3fselect-1.6.0/mlr3fselect/tests/testthat/test_fsi.R | 119 ++- mlr3fselect-1.6.0/mlr3fselect/tests/testthat/test_fsi_async.R | 6 mlr3fselect-1.6.0/mlr3fselect/tests/testthat/test_mlr_callbacks.R | 1 118 files changed, 2923 insertions(+), 1308 deletions(-)
Title: R Logging Package
Description: Pure R implementation of the ubiquitous log4j package. It offers hierarchic
loggers, multiple handlers per logger, level based filtering, space handling in messages
and custom formatting.
Author: Mario Frasca [aut, cre],
Walerian Sokolowski [aut]
Maintainer: Mario Frasca <mariotomo@gmail.com>
Diff between logging versions 0.10-108 dated 2019-07-14 and 0.10-111 dated 2026-05-21
DESCRIPTION | 16 ++++++++-------- MD5 | 9 +++++---- R/utils.R | 2 +- man/logging-package.Rd | 2 +- tests/testthat/_problems |only tests/testthat/test.msg-composer.R | 3 +++ 6 files changed, 18 insertions(+), 14 deletions(-)
Title: Accessing and Analyzing Large-Scale Environmental Data
Description: Functions are designed to facilitate access to and utility with large scale, publicly available environmental data in R. The package contains functions for downloading raw data files from web URLs (download_data()), processing the raw data files into clean spatial objects (process_covariates()), and extracting values from the spatial data objects at point and polygon locations (calculate_covariates()). These functions call a series of source-specific functions which are tailored to each data sources/datasets particular URL structure, data format, and spatial/temporal resolution. The functions are tested, versioned, and open source and open access. For sum_edc() method details, see Messier, Akita, and Serre (2012) <doi:10.1021/es203152a>.
Author: Mitchell Manware [aut, ctb] ,
Insang Song [aut, ctb] ,
Eva Marques [aut, ctb] ,
Mariana Alifa Kassien [aut, ctb] ,
Elizabeth Scholl [ctb] ,
Kyle Messier [aut, cre] ,
Spatiotemporal Exposures and Toxicology Group [cph]
Maintainer: Kyle Messier <kyle.messier@nih.gov>
Diff between amadeus versions 1.3.2.1 dated 2026-01-26 and 2.0.0 dated 2026-05-21
amadeus-1.3.2.1/amadeus/R/helpers.R |only amadeus-1.3.2.1/amadeus/inst/doc/gridmet_workflow.R |only amadeus-1.3.2.1/amadeus/inst/doc/gridmet_workflow.Rmd |only amadeus-1.3.2.1/amadeus/inst/doc/gridmet_workflow.html |only amadeus-1.3.2.1/amadeus/inst/doc/narr_workflow.R |only amadeus-1.3.2.1/amadeus/inst/doc/narr_workflow.Rmd |only amadeus-1.3.2.1/amadeus/inst/doc/narr_workflow.html |only amadeus-1.3.2.1/amadeus/inst/doc/terraclimate_workflow.R |only amadeus-1.3.2.1/amadeus/inst/doc/terraclimate_workflow.Rmd |only amadeus-1.3.2.1/amadeus/inst/doc/terraclimate_workflow.html |only amadeus-1.3.2.1/amadeus/inst/extdata/nasa |only amadeus-1.3.2.1/amadeus/inst/extdata/nlcd_classes.csv |only amadeus-1.3.2.1/amadeus/inst/extdata/openlandmap_assets.rds |only amadeus-1.3.2.1/amadeus/man/cov.Rd |only amadeus-1.3.2.1/amadeus/man/interactive.Rd |only amadeus-1.3.2.1/amadeus/man/process_modis_sds.Rd |only amadeus-1.3.2.1/amadeus/man/test.Rd |only amadeus-1.3.2.1/amadeus/man/test_download_functions.Rd 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amadeus-2.0.0/amadeus/man/download_data.Rd | 33 amadeus-2.0.0/amadeus/man/download_drought.Rd |only amadeus-2.0.0/amadeus/man/download_ecoregion.Rd | 70 amadeus-2.0.0/amadeus/man/download_edgar.Rd | 28 amadeus-2.0.0/amadeus/man/download_geos.Rd | 73 amadeus-2.0.0/amadeus/man/download_gmted.Rd | 64 amadeus-2.0.0/amadeus/man/download_goes.Rd |only amadeus-2.0.0/amadeus/man/download_gridmet.Rd | 70 amadeus-2.0.0/amadeus/man/download_groads.Rd | 72 amadeus-2.0.0/amadeus/man/download_hms.Rd | 81 amadeus-2.0.0/amadeus/man/download_huc.Rd | 21 amadeus-2.0.0/amadeus/man/download_improve.Rd |only amadeus-2.0.0/amadeus/man/download_koppen_geiger.Rd | 84 amadeus-2.0.0/amadeus/man/download_merra2.Rd | 246 amadeus-2.0.0/amadeus/man/download_modis.Rd | 152 amadeus-2.0.0/amadeus/man/download_narr.Rd | 193 amadeus-2.0.0/amadeus/man/download_nei.Rd | 101 amadeus-2.0.0/amadeus/man/download_nlcd.Rd | 90 amadeus-2.0.0/amadeus/man/download_population.Rd | 75 amadeus-2.0.0/amadeus/man/download_prism.Rd | 47 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Title: Power Analyses using Monte Carlo Simulations
Description: Provides a general purpose simulation-based power analysis
API for routine and customized simulation experimental designs.
The package focuses exclusively on Monte Carlo simulation experiment variants of
(expected) prospective power analyses,
criterion analyses, compromise analyses, sensitivity analyses, and
a priori/post-hoc analyses. The default simulation experiment functions defined within the package
provide stochastic variants of the power analysis subroutines in
G*Power 3.1 (Faul, Erdfelder, Buchner, and Lang, 2009) <doi:10.3758/brm.41.4.1149>,
along with various other parametric and non-parametric power analysis
applications (e.g., mediation analyses) and support for Bayesian power analysis
by way of Bayes factors or posterior probability evaluations.
Additional functions for building
empirical power curves, reanalyzing simulation information, and
for increasing the precision of the resulting power
estimates are also included, each of which utilize similar API structures. [...truncated...]
Author: Phil Chalmers [aut, cre]
Maintainer: Phil Chalmers <rphilip.chalmers@gmail.com>
Diff between Spower versions 0.6.2 dated 2026-05-05 and 0.6.3 dated 2026-05-21
DESCRIPTION | 6 MD5 | 34 - inst/doc/SpowerIntro.R | 26 inst/doc/SpowerIntro.Rmd | 28 - inst/doc/SpowerIntro.html | 354 ++++++------ inst/doc/SpowerIntro_logicals.R | 20 inst/doc/SpowerIntro_logicals.Rmd | 20 inst/doc/SpowerIntro_logicals.html | 378 ++++++------- inst/doc/Spower_TypeSM.R | 10 inst/doc/Spower_TypeSM.Rmd | 10 inst/doc/Spower_TypeSM.html | 178 +++--- inst/doc/gpower_examples.R | 82 +- inst/doc/gpower_examples.Rmd | 82 +- inst/doc/gpower_examples.html | 1022 ++++++++++++++++++------------------- vignettes/SpowerIntro.Rmd | 28 - vignettes/SpowerIntro_logicals.Rmd | 20 vignettes/Spower_TypeSM.Rmd | 10 vignettes/gpower_examples.Rmd | 82 +- 18 files changed, 1195 insertions(+), 1195 deletions(-)
Title: Regional and Multi-Regional Input-Output Data
Description: Provides Regional (Brazil, 2020) and Multi-Regional (World, 2000)
input-output matrices for R. This package serves as a data-only
companion to the 'fio' package, facilitating input-output analysis
by providing standardized R6 data objects.
Author: Alberson da Silva Miranda [aut, cre, cph] ,
Celso Bissoli Sessa [aut, dtc]
Maintainer: Alberson da Silva Miranda <albersonmiranda@hotmail.com>
Diff between fiodata versions 0.1.1 dated 2026-03-05 and 0.2.0 dated 2026-05-21
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ NEWS.md | 4 ++++ README.md | 1 + data/br_2020.rda |binary data/world_2000.rda |binary man/fiodata-package.Rd | 1 + 7 files changed, 16 insertions(+), 10 deletions(-)
Title: Interface for Large Language Model APIs in R
Description: Provides a unified interface to large language models across multiple
providers. Supports text generation, tidy data workflows, structured output
with optional JSON Schema validation, XML-like tag extraction, and embeddings.
Includes chat sessions, consistent error handling, and parallel batch tools.
Author: Ali Sanaei [aut, cre]
Maintainer: Ali Sanaei <sanaei@uchicago.edu>
Diff between LLMR versions 0.6.3 dated 2025-10-11 and 0.6.4 dated 2026-05-21
LLMR-0.6.3/LLMR/.aspell |only LLMR-0.6.4/LLMR/DESCRIPTION | 14 LLMR-0.6.4/LLMR/MD5 | 124 ++-- LLMR-0.6.4/LLMR/NAMESPACE | 3 LLMR-0.6.4/LLMR/NEWS.md | 18 LLMR-0.6.4/LLMR/R/LLMR.R | 487 +++++++++--------- LLMR-0.6.4/LLMR/R/LLMR_response.R | 34 - LLMR-0.6.4/LLMR/R/LLMR_tidy.R | 96 ++- LLMR-0.6.4/LLMR/R/LLM_chat_session.R | 2 LLMR-0.6.4/LLMR/R/LLM_parallel_utils.R | 45 - LLMR-0.6.4/LLMR/R/LLM_robust_utils.R | 7 LLMR-0.6.4/LLMR/R/globalVariables.R | 3 LLMR-0.6.4/LLMR/R/json_mode.R | 29 + LLMR-0.6.4/LLMR/R/tags_mode.R |only LLMR-0.6.4/LLMR/README.md | 155 ++++- LLMR-0.6.4/LLMR/inst/doc/about-schema.R | 8 LLMR-0.6.4/LLMR/inst/doc/about-schema.Rmd | 26 LLMR-0.6.4/LLMR/inst/doc/about-schema.html | 40 - LLMR-0.6.4/LLMR/inst/doc/chat-basics.R | 2 LLMR-0.6.4/LLMR/inst/doc/chat-basics.Rmd | 10 LLMR-0.6.4/LLMR/inst/doc/chat-basics.html | 14 LLMR-0.6.4/LLMR/inst/doc/experiments.R | 6 LLMR-0.6.4/LLMR/inst/doc/experiments.Rmd | 6 LLMR-0.6.4/LLMR/inst/doc/experiments.html | 6 LLMR-0.6.4/LLMR/inst/doc/presidential_embeddings.R | 102 ++- LLMR-0.6.4/LLMR/inst/doc/presidential_embeddings.Rmd | 76 +- LLMR-0.6.4/LLMR/inst/doc/presidential_embeddings.html | 85 +-- LLMR-0.6.4/LLMR/inst/doc/tidy-and-structured.R | 18 LLMR-0.6.4/LLMR/inst/doc/tidy-and-structured.Rmd | 31 - LLMR-0.6.4/LLMR/inst/doc/tidy-and-structured.html | 89 ++- LLMR-0.6.4/LLMR/inst/examples/JSON-Scheme.R | 4 LLMR-0.6.4/LLMR/inst/examples/LLM_experiment.R | 4 LLMR-0.6.4/LLMR/inst/examples/demo.qmd | 70 ++ LLMR-0.6.4/LLMR/man/LLMR-package.Rd |only LLMR-0.6.4/LLMR/man/call_llm.Rd | 9 LLMR-0.6.4/LLMR/man/call_llm_broadcast.Rd | 10 LLMR-0.6.4/LLMR/man/call_llm_compare.Rd | 14 LLMR-0.6.4/LLMR/man/call_llm_par.Rd | 11 LLMR-0.6.4/LLMR/man/call_llm_par_structured.Rd | 4 LLMR-0.6.4/LLMR/man/call_llm_robust.Rd | 2 LLMR-0.6.4/LLMR/man/call_llm_sweep.Rd | 10 LLMR-0.6.4/LLMR/man/disable_structured_output.Rd | 3 LLMR-0.6.4/LLMR/man/enable_structured_output.Rd | 11 LLMR-0.6.4/LLMR/man/get_batched_embeddings.Rd | 2 LLMR-0.6.4/LLMR/man/llm_chat_session.Rd | 2 LLMR-0.6.4/LLMR/man/llm_config.Rd | 29 - LLMR-0.6.4/LLMR/man/llm_fn.Rd | 17 LLMR-0.6.4/LLMR/man/llm_fn_structured.Rd | 4 LLMR-0.6.4/LLMR/man/llm_mutate.Rd | 67 ++ LLMR-0.6.4/LLMR/man/llm_mutate_structured.Rd | 8 LLMR-0.6.4/LLMR/man/llm_mutate_tags.Rd |only LLMR-0.6.4/LLMR/man/llm_parse_structured.Rd | 8 LLMR-0.6.4/LLMR/man/llm_parse_structured_col.Rd | 9 LLMR-0.6.4/LLMR/man/llm_parse_tags.Rd |only LLMR-0.6.4/LLMR/man/llm_parse_tags_col.Rd |only LLMR-0.6.4/LLMR/man/llm_validate_structured_col.Rd | 3 LLMR-0.6.4/LLMR/man/log_llm_error.Rd | 2 LLMR-0.6.4/LLMR/man/parse_embeddings.Rd | 2 LLMR-0.6.4/LLMR/tests/testthat/test-call_llm.R | 2 LLMR-0.6.4/LLMR/tests/testthat/test-gemini-vertex.R |only LLMR-0.6.4/LLMR/tests/testthat/test-json-mode.R | 23 LLMR-0.6.4/LLMR/tests/testthat/test-llm_fn.R | 2 LLMR-0.6.4/LLMR/vignettes/about-schema.Rmd | 26 LLMR-0.6.4/LLMR/vignettes/chat-basics.Rmd | 10 LLMR-0.6.4/LLMR/vignettes/experiments.Rmd | 6 LLMR-0.6.4/LLMR/vignettes/presidential_embeddings.Rmd | 76 +- LLMR-0.6.4/LLMR/vignettes/tidy-and-structured.Rmd | 31 - 67 files changed, 1317 insertions(+), 700 deletions(-)
Title: Leakage-Safe Modeling and Auditing for Genomic and Clinical Data
Description: Prevents and detects information leakage in biomedical machine learning.
Provides leakage-resistant split policies (subject-grouped, batch-blocked, study leave-out, time-ordered),
guarded preprocessing (train-only imputation, normalization, filtering, feature selection),
cross-validated fitting with common learners, permutation-gap auditing, batch and fold association tests,
and duplicate detection.
Author: Selcuk Korkmaz [aut, cre]
Maintainer: Selcuk Korkmaz <selcukorkmaz@gmail.com>
Diff between bioLeak versions 0.3.7 dated 2026-04-29 and 0.3.8 dated 2026-05-21
DESCRIPTION | 16 - MD5 | 76 ++--- NAMESPACE | 15 + R/accessors.R | 445 ++++++++++++++++++-------------- R/audit.R | 22 + R/classes.R | 37 ++ R/delta_lsi.R | 29 +- R/fit_resample.R | 16 + R/globals.R | 2 R/make_split_plan.R | 6 R/plotting_audit.R | 180 ++++++++++++ R/simulate_suite.R | 8 inst/doc/bioLeak-intro.R | 22 - inst/doc/bioLeak-intro.Rmd | 27 + inst/doc/bioLeak-intro.html | 115 ++++---- man/LeakClasses.Rd | 55 +++ man/audit_batch_assoc.Rd | 16 - man/audit_duplicates.Rd | 23 + man/audit_info.Rd | 23 + man/audit_leakage.Rd | 22 + man/audit_perm_gap.Rd | 13 man/audit_target_assoc.Rd | 24 + man/delta_lsi.Rd | 29 +- man/dlsi_R_eff.Rd | 17 - man/dlsi_ci.Rd | 22 + man/dlsi_metric.Rd | 13 man/dlsi_p_value.Rd | 13 man/dlsi_repeats.Rd | 13 man/dlsi_robust.Rd | 13 man/dlsi_tier.Rd | 17 - man/fit_metrics.Rd | 13 man/fit_resample.Rd | 16 + man/make_split_plan.Rd | 6 man/plot-LeakAudit-missing-method.Rd |only man/plot-LeakDeltaLSI-missing-method.Rd |only man/plot-LeakFit-missing-method.Rd |only man/plot_dlsi_repeats.Rd |only man/simulate_leakage_suite.Rd | 8 tests/testthat/test-accessors.R | 43 +-- tests/testthat/test-plot-methods.R |only tests/testthat/test-s4-accessors.R |only vignettes/bioLeak-intro.Rmd | 27 + 42 files changed, 1009 insertions(+), 433 deletions(-)
Title: High Throughput Phenotyping (HTP) Data Analysis
Description: Phenotypic analysis of data coming from high throughput
phenotyping (HTP) platforms, including different types of outlier detection,
spatial analysis, and parameter estimation. The package is being developed
within the EPPN2020 project (<https://cordis.europa.eu/project/id/731013>).
Some functions have been created to be used in conjunction with the R
package 'asreml' for the 'ASReml' software, which can be obtained upon
purchase from 'VSN' international (<https://vsni.co.uk/software/asreml-r/>).
Author: Emilie J Millet [aut] ,
Maria Xose Rodriguez Alvarez [aut] ,
Diana Marcela Perez Valencia [aut] ,
Isabelle Sanchez [aut],
Nadine Hilgert [aut],
Bart-Jan van Rossum [aut, cre] ,
Fred van Eeuwijk [aut] ,
Martin Boer [aut]
Maintainer: Bart-Jan van Rossum <bart-jan.vanrossum@wur.nl>
Diff between statgenHTP versions 1.0.9.1 dated 2025-07-03 and 1.0.9.2 dated 2026-05-21
DESCRIPTION | 10 +-- MD5 | 74 +++++++++++------------ NEWS.md | 4 + build/partial.rdb |binary build/vignette.rds |binary inst/doc/Overview_HTP.html | 82 ++++++++++++-------------- inst/tinytest/test_detectSerieOut.R | 8 +- inst/tinytest/test_estimateSplineParameters.R | 2 inst/tinytest/test_fitSpline.R | 4 - man/as.data.frame.TP.Rd | 12 +-- man/createTimePoints.Rd | 12 +-- man/detectSerieOut.Rd | 6 - man/detectSingleOut.Rd | 8 +- man/detectSingleOutMaize.Rd | 8 +- man/estimateSplineParameters.Rd | 4 - man/fitModels.Rd | 16 ++--- man/fitSpline.Rd | 4 - man/fitSplineHDM.Rd | 6 - man/getCorrected.Rd | 16 ++--- man/getEffDims.Rd | 16 ++--- man/getGenoPred.Rd | 16 ++--- man/getHerit.Rd | 16 ++--- man/getTimePoints.Rd | 12 +-- man/getVar.Rd | 16 ++--- man/plot.HTPSpline.Rd | 4 - man/plot.TP.Rd | 12 +-- man/plot.fitMod.Rd | 16 ++--- man/plot.psHDM.Rd | 6 - man/plot.serieOut.Rd | 6 - man/plot.singleOut.Rd | 8 +- man/plot.splineEst.Rd | 4 - man/predict.psHDM.Rd | 6 - man/removeSerieOut.Rd | 6 - man/removeSingleOut.Rd | 8 +- man/removeTimePoints.Rd | 12 +-- man/statgenHTP-package.Rd | 1 man/summary.TP.Rd | 12 +-- man/summary.fitMod.Rd | 16 ++--- 38 files changed, 236 insertions(+), 233 deletions(-)
Title: Helper Package for Installing 'OpenCV'
Description: Installs 'OpenCV' for use by other packages. 'OpenCV' <https://opencv.org/>
is library of programming functions mainly aimed at real-time computer
vision. This 'Lite' version installs the stable base version of 'OpenCV' and
some of its experimental externally contributed modules. It does not provide
R bindings directly.
Author: Simon Garnier [aut, cre, cph] ,
Muschelli John [ctb]
Maintainer: Simon Garnier <garnier@njit.edu>
Diff between ROpenCVLite versions 4.110.0 dated 2025-05-05 and 4.130.0 dated 2026-05-21
DESCRIPTION | 31 +++-- MD5 | 41 ++++--- NEWS.md | 25 ++++ R/ROpenCVLite.R | 2 R/install.R | 237 +++++++++++++++++++++++++++++++-------------- R/utils.R | 148 +++++++++++++++++++--------- R/zzz.R | 61 ++++------- README.md | 13 -- build/vignette.rds |binary inst/doc/install.R | 9 - inst/doc/install.Rmd | 89 ++++++---------- inst/doc/install.html | 82 ++++++--------- inst/doc/usage.Rmd | 2 inst/doc/usage.html | 2 man/ROpenCVLite-package.Rd | 1 man/defaultOpenCVPath.Rd | 2 man/installOpenCV.Rd | 25 ++++ tests |only vignettes/install.Rmd | 89 ++++++---------- vignettes/usage.Rmd | 2 20 files changed, 497 insertions(+), 364 deletions(-)
Title: Correction of Preprocessed MS Data
Description: An 'R' implementation of the 'python' program Metabolomics Peak Analysis Computational Tool ('MPACT') (Robert M. Samples, Sara P. Puckett, and Marcy J. Balunas (2023) <doi:10.1021/acs.analchem.2c04632>). Filters in the package serve to address common errors in tandem mass spectrometry preprocessing, including: (1) isotopic patterns that are incorrectly split during preprocessing, (2) features present in solvent blanks due to carryover between samples, (3) features whose abundance is greater than user-defined abundance threshold in a specific group of samples, for example media blanks, (4) ions that are inconsistent between technical replicates, and (5) in-source fragment ions created during ionization before fragmentation in the tandem mass spectrometry workflow.
Author: Allison Mason [aut] ,
Gregory Johnson [aut] ,
Patrick Schloss [aut, cre, cph]
Maintainer: Patrick Schloss <pschloss@umich.edu>
Diff between mpactr versions 0.3.2 dated 2026-05-14 and 0.3.3 dated 2026-05-21
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Title: Extra Geometries and Stats for 'ggplot2'
Description: A collection of layers for 'ggplot2'. Provides geoms built on
linear and radial gradients from the 'grid' package, giving areas, bars,
paths, rectangles, and ridgelines a fading or glowing visual effect.
Also includes mathematically driven layers — catenary curves,
Chaikin's corner-cutting smoothing
(Chaikin, 1974, <doi:10.1016/0146-664X(74)90028-8>), and Fourier-series
reconstruction — plus Lexis diagrams, isotype bar charts.
Author: Markus Doering [aut, cre, cph]
Maintainer: Markus Doering <m4rkus.doering@gmail.com>
Diff between ggpointless versions 0.2.0 dated 2026-03-09 and 0.3.0 dated 2026-05-21
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Title: Understand and Describe Bayesian Models and Posterior
Distributions
Description: Provides utilities to describe posterior
distributions and Bayesian models. It includes point-estimates such as
Maximum A Posteriori (MAP), measures of dispersion (Highest Density
Interval - HDI; Kruschke, 2015 <doi:10.1016/C2012-0-00477-2>) and
indices used for null-hypothesis testing (such as ROPE percentage, pd
and Bayes factors). References: Makowski et al. (2021) <doi:10.21105/joss.01541>.
Author: Dominique Makowski [aut, cre] ,
Daniel Luedecke [aut] ,
Mattan S. Ben-Shachar [aut] ,
Indrajeet Patil [aut] ,
Micah K. Wilson [aut] ,
Brenton M. Wiernik [aut] ,
Paul-Christian Buerkner [rev],
Tristan Mahr [rev] ,
Henrik Singmann [ctb] ,
Quentin F. Gron [...truncated...]
Maintainer: Dominique Makowski <officialeasystats@gmail.com>
Diff between bayestestR versions 0.17.0 dated 2025-08-29 and 0.18.0 dated 2026-05-21
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bayestestR-0.18.0/bayestestR/build/partial.rdb |binary bayestestR-0.18.0/bayestestR/build/vignette.rds |binary bayestestR-0.18.0/bayestestR/man/bayesfactor.Rd | 2 bayestestR-0.18.0/bayestestR/man/bayesfactor_inclusion.Rd | 37 - bayestestR-0.18.0/bayestestR/man/bayesfactor_methods.Rd |only bayestestR-0.18.0/bayestestR/man/bayesfactor_models.Rd | 99 ++ bayestestR-0.18.0/bayestestR/man/bayesfactor_parameters.Rd | 89 +- bayestestR-0.18.0/bayestestR/man/bayesfactor_restricted.Rd | 91 +- bayestestR-0.18.0/bayestestR/man/bci.Rd | 34 bayestestR-0.18.0/bayestestR/man/check_prior.Rd | 2 bayestestR-0.18.0/bayestestR/man/ci.Rd | 10 bayestestR-0.18.0/bayestestR/man/convert_bayesian_as_frequentist.Rd | 2 bayestestR-0.18.0/bayestestR/man/describe_posterior.Rd | 11 bayestestR-0.18.0/bayestestR/man/diagnostic_draws.Rd | 5 bayestestR-0.18.0/bayestestR/man/diagnostic_posterior.Rd | 41 - bayestestR-0.18.0/bayestestR/man/display.describe_posterior.Rd | 2 bayestestR-0.18.0/bayestestR/man/distribution.Rd | 5 bayestestR-0.18.0/bayestestR/man/effective_sample.Rd | 9 bayestestR-0.18.0/bayestestR/man/equivalence_test.Rd | 12 bayestestR-0.18.0/bayestestR/man/estimate_density.Rd | 2 bayestestR-0.18.0/bayestestR/man/eti.Rd | 36 - bayestestR-0.18.0/bayestestR/man/figures/logo.png |binary bayestestR-0.18.0/bayestestR/man/figures/unnamed-chunk-10-1.png |binary bayestestR-0.18.0/bayestestR/man/figures/unnamed-chunk-12-1.png |binary bayestestR-0.18.0/bayestestR/man/figures/unnamed-chunk-14-1.png |binary bayestestR-0.18.0/bayestestR/man/figures/unnamed-chunk-16-1.png |binary bayestestR-0.18.0/bayestestR/man/figures/unnamed-chunk-7-1.png |binary bayestestR-0.18.0/bayestestR/man/figures/unnamed-chunk-8-1.png |binary bayestestR-0.18.0/bayestestR/man/hdi.Rd | 36 - bayestestR-0.18.0/bayestestR/man/map_estimate.Rd | 2 bayestestR-0.18.0/bayestestR/man/mcse.Rd | 2 bayestestR-0.18.0/bayestestR/man/mediation.Rd | 4 bayestestR-0.18.0/bayestestR/man/p_direction.Rd | 4 bayestestR-0.18.0/bayestestR/man/p_map.Rd | 2 bayestestR-0.18.0/bayestestR/man/p_significance.Rd | 2 bayestestR-0.18.0/bayestestR/man/p_to_bf.Rd | 2 bayestestR-0.18.0/bayestestR/man/point_estimate.Rd | 2 bayestestR-0.18.0/bayestestR/man/rope.Rd | 13 bayestestR-0.18.0/bayestestR/man/rope_range.Rd | 2 bayestestR-0.18.0/bayestestR/man/sensitivity_to_prior.Rd | 2 bayestestR-0.18.0/bayestestR/man/sexit.Rd | 2 bayestestR-0.18.0/bayestestR/man/si.Rd | 47 - bayestestR-0.18.0/bayestestR/man/simulate_correlation.Rd | 2 bayestestR-0.18.0/bayestestR/man/simulate_simpson.Rd | 2 bayestestR-0.18.0/bayestestR/man/spi.Rd | 4 bayestestR-0.18.0/bayestestR/tests/testthat/test-bayesfactor_models.R | 55 + bayestestR-0.18.0/bayestestR/tests/testthat/test-bayesfactor_restricted.R | 32 bayestestR-0.18.0/bayestestR/tests/testthat/test-blavaan.R | 26 bayestestR-0.18.0/bayestestR/tests/testthat/test-brms.R | 157 +++- bayestestR-0.18.0/bayestestR/tests/testthat/test-describe_posterior.R | 315 +++++++- bayestestR-0.18.0/bayestestR/tests/testthat/test-diagnostic_posterior.R |only bayestestR-0.18.0/bayestestR/tests/testthat/test-rope.R | 35 bayestestR-0.18.0/bayestestR/tests/testthat/test-rstanarm.R | 125 ++- 94 files changed, 3091 insertions(+), 1665 deletions(-)
Title: Tufte's Styles for R Markdown Documents
Description: Provides R Markdown output formats to use Tufte styles for
PDF and HTML output.
Author: Yihui Xie [aut] ,
Christophe Dervieux [ctb, cre] ,
JJ Allaire [aut],
Andrzej Oles [ctb],
Dave Liepmann [ctb] ,
Posit Software, PBC [cph, fnd]
Maintainer: Christophe Dervieux <cderv@posit.co>
Diff between tufte versions 0.14.0 dated 2025-07-29 and 0.15.0 dated 2026-05-21
tufte-0.14.0/tufte/tools |only tufte-0.15.0/tufte/DESCRIPTION | 16 - tufte-0.15.0/tufte/MD5 | 31 +- tufte-0.15.0/tufte/NAMESPACE | 3 tufte-0.15.0/tufte/NEWS.md | 87 ++++- tufte-0.15.0/tufte/R/handout.R | 105 ++++++ tufte-0.15.0/tufte/R/html.R | 48 ++- tufte-0.15.0/tufte/R/utils.R | 123 ++++++-- tufte-0.15.0/tufte/README.md | 2 tufte-0.15.0/tufte/inst/rmarkdown/templates/tufte_handout/patches |only tufte-0.15.0/tufte/man/tufte-package.Rd | 2 tufte-0.15.0/tufte/man/tufte_handout.Rd | 69 ++++ tufte-0.15.0/tufte/tests/testthat/_snaps/new-citeproc-post-3.8 |only tufte-0.15.0/tufte/tests/testthat/_snaps/pandoc-citeproc/html.md | 62 ++-- tufte-0.15.0/tufte/tests/testthat/helpers.R | 21 + tufte-0.15.0/tufte/tests/testthat/resources/refs-natbib.bib |only tufte-0.15.0/tufte/tests/testthat/test-handout.R |only tufte-0.15.0/tufte/tests/testthat/test-html.R | 153 +++++++++- tufte-0.15.0/tufte/tests/testthat/test-pdf.R |only tufte-0.15.0/tufte/tests/testthat/test-utils.R |only 20 files changed, 620 insertions(+), 102 deletions(-)
Title: Data Science Infrastructure for Global Health
Description: Supports global health data analysis, including a
publication-ready 'ggplot2' theme, a 'flextable' defaults helper,
a thin pie chart wrapper, built-in regional country-code datasets
with a WHO region lookup helper, a geometric mean function for
indicator aggregation, and convenience clients for the World
Health Organization Global Health Observatory (GHO) OData API
<https://ghoapi.azureedge.net/api/> and the United Nations
Sustainable Development Goals (SDG) API
<https://unstats.un.org/SDGAPI/swagger/>.
Author: Shanlong Ding [aut, cre]
Maintainer: Shanlong Ding <dings@who.int>
Diff between DSIR versions 0.2.0 dated 2026-04-21 and 0.7.0 dated 2026-05-21
DSIR-0.2.0/DSIR/man/wpro_cty.Rd |only DSIR-0.7.0/DSIR/DESCRIPTION | 39 - DSIR-0.7.0/DSIR/MD5 | 109 ++ DSIR-0.7.0/DSIR/NAMESPACE | 16 DSIR-0.7.0/DSIR/NEWS.md | 379 ++++++++- DSIR-0.7.0/DSIR/R/DSIR-package.R | 25 DSIR-0.7.0/DSIR/R/bind_indicators.R |only DSIR-0.7.0/DSIR/R/clean_schema.R |only DSIR-0.7.0/DSIR/R/data.R | 168 ++++ DSIR-0.7.0/DSIR/R/geomean.R |only DSIR-0.7.0/DSIR/R/ggpie.R | 149 +-- DSIR-0.7.0/DSIR/R/gho.R | 544 ++++++++++++-- DSIR-0.7.0/DSIR/R/iso3_to_m49.R |only DSIR-0.7.0/DSIR/R/iso3_to_region.R |only DSIR-0.7.0/DSIR/R/m49_to_iso3.R |only DSIR-0.7.0/DSIR/R/scale_dsi_col.R |only DSIR-0.7.0/DSIR/R/sdg.R | 392 ++++++++-- DSIR-0.7.0/DSIR/R/sdg_coverage.R |only DSIR-0.7.0/DSIR/R/theme_dsi.R | 304 ++++++- DSIR-0.7.0/DSIR/README.md | 409 ++++++++-- DSIR-0.7.0/DSIR/build |only DSIR-0.7.0/DSIR/data/afro_cty.rda |only DSIR-0.7.0/DSIR/data/amro_cty.rda |only DSIR-0.7.0/DSIR/data/emro_cty.rda |only DSIR-0.7.0/DSIR/data/euro_cty.rda |only DSIR-0.7.0/DSIR/data/pic_cty.rda |only DSIR-0.7.0/DSIR/data/searo_cty.rda |only DSIR-0.7.0/DSIR/data/who_countries.rda |only DSIR-0.7.0/DSIR/data/wpro_cty.rda |binary DSIR-0.7.0/DSIR/inst/doc |only DSIR-0.7.0/DSIR/man/DSIR-package.Rd | 76 + DSIR-0.7.0/DSIR/man/bind_indicators.Rd |only DSIR-0.7.0/DSIR/man/figures/logo.jpg |binary DSIR-0.7.0/DSIR/man/geomean.Rd |only DSIR-0.7.0/DSIR/man/ggpie.Rd | 110 +- DSIR-0.7.0/DSIR/man/gho_clean.Rd |only DSIR-0.7.0/DSIR/man/gho_count.Rd |only DSIR-0.7.0/DSIR/man/gho_coverage.Rd |only DSIR-0.7.0/DSIR/man/gho_data.Rd | 6 DSIR-0.7.0/DSIR/man/gho_dimensions.Rd | 2 DSIR-0.7.0/DSIR/man/gho_has_data.Rd |only DSIR-0.7.0/DSIR/man/gho_indicators.Rd | 83 +- DSIR-0.7.0/DSIR/man/iso3_to_m49.Rd |only DSIR-0.7.0/DSIR/man/iso3_to_region.Rd |only DSIR-0.7.0/DSIR/man/m49_to_iso3.Rd |only DSIR-0.7.0/DSIR/man/pic_cty.Rd |only DSIR-0.7.0/DSIR/man/scale_dsi_col.Rd |only DSIR-0.7.0/DSIR/man/sdg_areas.Rd | 6 DSIR-0.7.0/DSIR/man/sdg_clean.Rd |only DSIR-0.7.0/DSIR/man/sdg_coverage.Rd |only DSIR-0.7.0/DSIR/man/sdg_data.Rd | 25 DSIR-0.7.0/DSIR/man/sdg_goals.Rd | 6 DSIR-0.7.0/DSIR/man/sdg_indicators.Rd | 40 - DSIR-0.7.0/DSIR/man/sdg_targets.Rd | 6 DSIR-0.7.0/DSIR/man/theme_dsi.Rd | 71 + DSIR-0.7.0/DSIR/man/theme_dsi_facet.Rd |only DSIR-0.7.0/DSIR/man/who_countries.Rd |only DSIR-0.7.0/DSIR/man/who_region_vectors.Rd |only DSIR-0.7.0/DSIR/tests/testthat/helper-gho-cache.R |only DSIR-0.7.0/DSIR/tests/testthat/test-bind_indicators.R |only DSIR-0.7.0/DSIR/tests/testthat/test-clean.R |only DSIR-0.7.0/DSIR/tests/testthat/test-flextable_defaults.R | 24 DSIR-0.7.0/DSIR/tests/testthat/test-geomean.R |only DSIR-0.7.0/DSIR/tests/testthat/test-ggpie.R | 13 DSIR-0.7.0/DSIR/tests/testthat/test-gho-availability.R |only DSIR-0.7.0/DSIR/tests/testthat/test-gho-dimensions.R |only DSIR-0.7.0/DSIR/tests/testthat/test-gho-get-mock.R |only DSIR-0.7.0/DSIR/tests/testthat/test-gho.R |only DSIR-0.7.0/DSIR/tests/testthat/test-iso3-to-m49.R |only DSIR-0.7.0/DSIR/tests/testthat/test-iso3_to_region.R |only DSIR-0.7.0/DSIR/tests/testthat/test-m49_to_iso3.R |only DSIR-0.7.0/DSIR/tests/testthat/test-region_vectors.R |only DSIR-0.7.0/DSIR/tests/testthat/test-scale_dsi_col.R |only DSIR-0.7.0/DSIR/tests/testthat/test-sdg-area-resolution.R |only DSIR-0.7.0/DSIR/tests/testthat/test-sdg-coverage.R |only DSIR-0.7.0/DSIR/tests/testthat/test-sdg-get-mock.R |only DSIR-0.7.0/DSIR/tests/testthat/test-sdg-indicators.R |only DSIR-0.7.0/DSIR/tests/testthat/test-sdg-year-filter.R |only DSIR-0.7.0/DSIR/tests/testthat/test-theme-dsi-facet.R |only DSIR-0.7.0/DSIR/tests/testthat/test-theme_dsi.R | 55 + DSIR-0.7.0/DSIR/tests/testthat/test-who_countries.R |only DSIR-0.7.0/DSIR/vignettes |only 82 files changed, 2491 insertions(+), 566 deletions(-)
Title: Client for the Brazilian Foreign Trade Statistics API
('ComexStat')
Description: Interface to the 'ComexStat' API
<https://comexstat.mdic.gov.br/> from the Brazilian Ministry of
Development, Industry, Trade and Services (MDIC). Provides access to
detailed export and import data, including general trade statistics
(1997-present), city-level data, historical data (1989-1996), and
auxiliary tables with product codes (NCM - Nomenclatura Comum do
Mercosul, NBM - Nomenclatura Brasileira de Mercadorias, HS -
Harmonized System), countries, economic classifications (CGCE -
Classificacao por Grandes Categorias Economicas, SITC - Standard
International Trade Classification, ISIC - International Standard
Industrial Classification), and other categories. Uses only 'httr2'
for HTTP requests and 'cli' for console messages.
Author: Andre Leite [aut, cre],
Marcos Wasilew [aut],
Hugo Vasconcelos [aut],
Carlos Amorin [aut],
Diogo Bezerra [aut]
Maintainer: Andre Leite <leite@castlab.org>
Diff between comexr versions 0.2.1 dated 2026-03-17 and 0.3.0 dated 2026-05-21
DESCRIPTION | 10 ++-- MD5 | 64 ++++++++++++++++-------------- NEWS.md | 51 +++++++++++++++++++++++ R/historical.R | 8 ++- R/query.R | 35 +++++++++------- R/query_city.R | 34 +++++++-------- R/tables.R | 11 ++++- R/tables_classifications.R | 52 ++++++++++-------------- R/utils.R | 81 ++++++++++++++++++++++---------------- README.md | 1 build/vignette.rds |binary inst/doc/auxiliary-tables.R | 5 +- inst/doc/auxiliary-tables.Rmd | 11 +++-- inst/doc/auxiliary-tables.html | 12 +++-- inst/doc/city-profile.R |only inst/doc/city-profile.Rmd |only inst/doc/city-profile.html |only inst/doc/getting-started.Rmd | 34 +++++++-------- inst/doc/getting-started.html | 64 ++++++++++++++++-------------- inst/doc/querying-trade-data.Rmd | 11 +++-- inst/doc/querying-trade-data.html | 15 ++++--- inst/doc/state-trade-profile.R |only inst/doc/state-trade-profile.Rmd |only inst/doc/state-trade-profile.html |only man/comex_export.Rd | 35 +++++++++------- man/comex_filter_values.Rd | 11 ++++- man/comex_historical.Rd | 8 ++- man/comex_import.Rd | 35 +++++++++------- man/comex_isic.Rd | 46 +++++++-------------- man/comex_query.Rd | 35 +++++++++------- man/comex_query_city.Rd | 26 ++++++------ man/comexr-package.Rd | 1 vignettes/auxiliary-tables.Rmd | 11 +++-- vignettes/city-profile.Rmd |only vignettes/getting-started.Rmd | 34 +++++++-------- vignettes/querying-trade-data.Rmd | 11 +++-- vignettes/state-trade-profile.Rmd |only 37 files changed, 439 insertions(+), 313 deletions(-)
Title: Fuzzy Similarity in Species Distributions
Description: Functions to compute fuzzy versions of species occurrence patterns based on presence-absence data (including inverse distance interpolation, trend surface analysis, and prevalence-independent favourability obtained from probability of presence), as well as pair-wise fuzzy similarity (based on fuzzy logic versions of commonly used similarity indices) among those occurrence patterns. Includes also functions for model consensus and comparison (overlap and fuzzy similarity, fuzzy loss, fuzzy gain), and for data preparation, such as obtaining unique abbreviations of species names, defining the background region, cleaning and gridding (thinning) point occurrence data onto raster maps, selecting among (pseudo)absences to address survey bias, converting species lists (long format) to presence-absence tables (wide format), transposing part of a data frame, selecting relevant variables for models, assessing the false discovery rate, or analysing and dealing with multicollinearity. Initially desc [...truncated...]
Author: A. Marcia Barbosa [aut],
Alba Estrada [ctb],
Paul Melloy [ctb],
Jose Carlos Guerrero [fnd],
A. Marcia Barbosa [cre]
Maintainer: A. Marcia Barbosa <ana.marcia.barbosa@gmail.com>
Diff between fuzzySim versions 4.50 dated 2026-03-28 and 4.54 dated 2026-05-21
DESCRIPTION | 8 +- MD5 | 34 ++++---- NEWS.md | 189 ++++++++++-------------------------------------- R/cleanCoords.R | 20 +++-- R/gridRecords.R | 9 +- R/multicol.R | 17 ++-- R/partialResp.R | 35 +++++--- data/rotif.env.rda |binary data/rotifers.rda |binary man/biasLayer.Rd | 3 man/cleanCoords.Rd | 18 ++-- man/corSelect.Rd | 2 man/fuzzySim-package.Rd | 4 - man/getRegion.Rd | 13 ++- man/gridRecords.Rd | 3 man/multicol.Rd | 10 +- man/partialResp.Rd | 8 +- man/stepwise.Rd | 12 +-- 18 files changed, 159 insertions(+), 226 deletions(-)
Title: Conducts Analyses Informing Ecosystem Restoration Decisions
Description: Three sets of data and functions for informing ecosystem restoration
decisions, particularly in the context of the U.S. Army Corps of Engineers.
First, model parameters are compiled as a data set and associated metadata
for over 300 habitat suitability models developed by the U.S. Fish and
Wildlife Service (USFWS 1980, <https://www.fws.gov/policy-library/870fw1>).
Second, functions for conducting habitat suitability analyses both for the
models described above as well as generic user-specified model parameterizations.
Third, a suite of decision support tools for conducting cost-effectiveness and
incremental cost analyses (Robinson et al. 1995, IWR Report 95-R-1, U.S.
Army Corps of Engineers).
Author: S. Kyle McKay [aut, cre] ,
Darixa D. Hernandez-Abrams [aut],
Kiara C. Cushway [aut]
Maintainer: S. Kyle McKay <skmckay@gmail.com>
Diff between ecorest versions 2.0.2 dated 2026-03-30 and 2.0.3 dated 2026-05-21
DESCRIPTION | 6 MD5 | 50 +++---- R/BBfinder.R | 12 + R/CEICAplotter.R | 144 +++++++++++---------- R/CEfinder.R | 8 - R/HSIarimean.R | 40 ++++- R/HSIeqtn.R | 352 +++++++++++++++++++++++++++++----------------------- R/HSIgeomean.R | 37 ++++- R/HSImin.R | 36 ++++- R/HSIplotter.R | 9 + R/HSIwarimean.R | 58 ++++++-- R/HUcalc.R | 47 +++++- R/SIcalc.R | 175 ++++++++++++++++--------- R/annualizer.R | 16 +- man/BBfinder.Rd | 6 man/CEICAplotter.Rd | 10 - man/CEfinder.Rd | 4 man/HSIarimean.Rd | 20 ++ man/HSIeqtn.Rd | 56 +++++--- man/HSIgeomean.Rd | 16 +- man/HSImin.Rd | 16 +- man/HSIplotter.Rd | 6 man/HSIwarimean.Rd | 15 +- man/HUcalc.Rd | 17 +- man/SIcalc.Rd | 35 ++--- man/annualizer.Rd | 5 26 files changed, 752 insertions(+), 444 deletions(-)
Title: MR Spectroscopy Analysis Tools
Description: Tools for reading, visualising and processing Magnetic Resonance
Spectroscopy data. The package includes methods for spectral fitting: Wilson
(2021) <DOI:10.1002/mrm.28385>, Wilson (2025) <DOI:10.1002/mrm.30462> and
spectral alignment: Wilson (2018) <DOI:10.1002/mrm.27605>.
Author: Martin Wilson [cre, aut] ,
Yong Wang [ctb],
John Muschelli [ctb]
Maintainer: Martin Wilson <martin.wilson111@gmail.com>
Diff between spant versions 4.0.0 dated 2026-05-08 and 4.1.0 dated 2026-05-21
DESCRIPTION | 8 +- MD5 | 20 ++--- NEWS.md | 4 + R/fit_svs.R | 6 - R/fit_svs_edited.R | 6 - inst/doc/spant-intro.html | 132 +++++++++++++++++++------------------- inst/doc/spant-preprocessing.html | 4 - man/fit_svs.Rd | 4 - man/fit_svs_edited.Rd | 4 - src/lsei.f | 4 - tests/testthat/test_qm_sim.R | 2 11 files changed, 100 insertions(+), 94 deletions(-)
Title: Convert Chinese Characters into Hanyu Pinyin
Description: Convert Chinese characters into Hanyu Pinyin (the official
romanization system for Standard Chinese) with support for tones,
toneless output, initials, URL slugs, and valid R variable names.
The package was inspired by the now-orphaned CRAN package 'pinyin'
(archived in April 2026 after the maintainer became unreachable).
'hanyupinyin' is a ground-up rewrite using the authoritative Unicode
Unihan database, a vectorized engine, and modern R practices.
Dictionary data are derived from the Unicode Unihan Database
(Unicode Consortium, 2025) <https://www.unicode.org/reports/tr38/>.
Author: Haoran Cui [aut, cre]
Maintainer: Haoran Cui <hao.ran.cui@ktstat.com>
Diff between hanyupinyin versions 0.1.1 dated 2026-04-22 and 0.1.3 dated 2026-05-21
DESCRIPTION | 6 MD5 | 29 ++-- NAMESPACE | 1 NEWS.md | 19 ++ R/sysdata.rda |binary R/to_pinyin.R | 268 ++++++++++++++++++++++++++++++++++++---- README.md | 43 +++++- man/add_phrase.Rd | 30 +++- man/list_phrases.Rd | 11 + man/to_pinyin.Rd | 15 +- man/to_pinyin_initials.Rd | 7 - man/to_pinyin_marks.Rd |only man/to_pinyin_toneless.Rd | 7 - man/to_slug.Rd | 7 - man/to_varname.Rd | 7 - tests/testthat/test-to_pinyin.R | 48 ++++++- 16 files changed, 426 insertions(+), 72 deletions(-)
Title: Retrieve Data from 'Banco de España'
Description: Tools for retrieving time series data from 'Banco de España'
('BdE') as 'tibble' objects. 'Banco de España' is the national central
bank and, within the framework of the Single Supervisory Mechanism
('SSM'), the supervisor of the Spanish banking system alongside the
European Central Bank. This package is not sponsored, endorsed or
administered by 'Banco de España'.
Author: Diego H. Herrero [aut, cre, cph]
Maintainer: Diego H. Herrero <dev.dieghernan@gmail.com>
Diff between tidyBdE versions 0.6.0 dated 2026-03-23 and 0.6.1 dated 2026-05-21
DESCRIPTION | 21 MD5 | 96 +-- NAMESPACE | 78 +- NEWS.md | 150 ++-- R/bde_check_access.R | 122 +-- R/bde_tidy_palettes.R | 39 - R/catalogs.R | 793 ++++++++++++------------- R/data.R | 76 +- R/indicators.R | 368 +++++------ R/scales.R | 23 R/series.R | 914 ++++++++++++++--------------- R/superseded.R | 101 +-- R/theme_tidybde.R | 214 +++--- R/tidyBdE-package.R | 18 R/utils.R | 588 +++++++++--------- README.md | 93 +- build/vignette.rds |binary data/bde_ind_db.rda |binary inst/CITATION | 36 - inst/COPYRIGHTS | 30 inst/WORDLIST | 90 ++ inst/doc/tidyBdE.html | 86 +- inst/doc/tidyBdE.qmd | 60 - inst/schemaorg.json | 10 man/bde_catalog_load.Rd | 136 ++-- man/bde_catalog_search.Rd | 130 ++-- man/bde_catalog_update.Rd | 115 +-- man/bde_check_access.Rd | 43 - man/bde_ind_db.Rd | 98 +-- man/bde_indicators.Rd | 168 ++--- man/bde_pals.Rd | 66 +- man/bde_parse_dates.Rd | 118 +-- man/bde_series_full_load.Rd | 159 ++--- man/bde_series_load.Rd | 264 ++++---- man/bde_tidy_palettes.Rd | 112 +-- man/scales_bde.Rd | 195 +++--- man/theme_tidybde.Rd | 147 ++-- man/tidyBdE-package.Rd | 57 - tests/testthat.R | 24 tests/testthat/_snaps/bde_tidy_palettes.md | 30 tests/testthat/_snaps/superseded.md | 36 - tests/testthat/test-bde_tidy_palettes.R | 90 +- tests/testthat/test-catalogs.R | 218 +++--- tests/testthat/test-indicators.R | 70 +- tests/testthat/test-parse_dates.R | 43 - tests/testthat/test-scales.R | 194 +++--- tests/testthat/test-series.R | 257 ++++---- tests/testthat/test-superseded.R | 32 - vignettes/tidyBdE.qmd | 60 - 49 files changed, 3461 insertions(+), 3407 deletions(-)
Title: Nanosecond-Resolution Time Support for R
Description: Full 64-bit resolution date and time functionality with
nanosecond granularity is provided, with easy transition to and from
the standard 'POSIXct' type. Three additional classes offer interval,
period and duration functionality for nanosecond-resolution timestamps.
Author: Dirk Eddelbuettel [aut, cre] ,
Leonardo Silvestri [aut]
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between nanotime versions 0.3.14 dated 2026-04-22 and 0.3.15 dated 2026-05-21
ChangeLog | 24 ++++++++++++++++++++---- DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ build/vignette.rds |binary inst/NEWS.Rd | 9 +++++++++ src/rounding.cpp | 4 ++-- tools/configure.R | 8 +++++--- 7 files changed, 46 insertions(+), 19 deletions(-)
Title: Boundary Adaptive Local Polynomial Conditional Density Estimator
Description: Tools for estimation and inference of conditional densities, derivatives and functions. This is the companion software for Cattaneo, Chandak, Jansson and Ma (2024) <doi:10.3150/23-BEJ1711>.
Author: Matias D. Cattaneo [aut, cre],
Rajita Chandak [aut],
Michael Jansson [aut],
Xinwei Ma [aut]
Maintainer: Matias D. Cattaneo <matias.d.cattaneo@gmail.com>
Diff between lpcde versions 0.1.6 dated 2025-02-25 and 1.0.0 dated 2026-05-21
DESCRIPTION | 42 MD5 | 114 - NAMESPACE | 36 NEWS.md | 71 - R/RcppExports.R | 26 R/lpbwcde.R | 560 ++++---- R/lpbwcde_fns.R | 1828 +++++++++++++-------------- R/lpbwcde_methods.R | 404 +++--- R/lpcde-package.R | 10 R/lpcde.R | 728 +++++------ R/lpcde_fns.R | 1219 ++++++++---------- R/lpcde_methods.R | 1912 ++++++++++++++--------------- R/matrices.R | 379 +++-- R/utils.R | 542 ++++---- README.md | 105 - build/partial.rdb |binary inst/REFERENCES.bib | 78 - man/S_exact.Rd | 46 man/S_x.Rd | 44 man/T_x.Rd | 52 man/T_y.Rd | 44 man/T_y_exact.Rd | 52 man/b_x.Rd | 48 man/basis_vec.Rd | 52 man/bw_irot.Rd | 72 - man/bw_rot.Rd | 72 - man/c_exact.Rd | 52 man/c_x.Rd | 50 man/check_inv.Rd | 36 man/coef.lpbwcde.Rd | 87 - man/coef.lpcde.Rd | 90 - man/confint.lpcde.Rd | 142 +- man/cov_hat.Rd | 80 - man/fhat.Rd | 72 - man/int_val.Rd | 50 man/kernel_eval.Rd | 40 man/lpbwcde.Rd | 208 +-- man/lpcde.Rd | 310 ++-- man/lpcde_fn.Rd | 122 - man/mvec.Rd | 34 man/normal_dgps.Rd | 42 man/plot.lpcde.Rd | 262 +-- man/poly_base.Rd | 50 man/print.lpbwcde.Rd | 90 - man/print.lpcde.Rd | 88 - man/print_all_sumC.Rd | 38 man/summary.lpbwcde.Rd | 94 - man/summary.lpcde.Rd | 100 - man/vcov.lpcde.Rd | 98 - src/Makevars | 5 src/Makevars.win | 5 tests/fixtures |only tests/test.R | 98 - tests/testthat.R | 8 tests/testthat/test-lpbwcde.R | 88 - tests/testthat/test-lpcde.R | 218 +-- tests/testthat/test-matrices.R | 22 tests/testthat/test-numerical-regression.R |only tests/testthat/test-utils.R | 70 - 59 files changed, 5582 insertions(+), 5703 deletions(-)
Title: Convert Digital Images into 'SpatRaster' Objects
Description: Create 'SpatRaster' objects, as defined by the 'terra'
package, from digital images using a spatial object as a geographic
reference. Supported inputs include objects from the 'sf', 'terra' and
'stars' packages. The main function is an S3 generic, so other
packages can provide methods for additional spatial classes.
Author: Diego Hernangomez [aut, cre, cph]
Maintainer: Diego Hernangomez <diego.hernangomezherrero@gmail.com>
Diff between rasterpic versions 0.4.0 dated 2026-03-21 and 0.5.0 dated 2026-05-21
rasterpic-0.4.0/rasterpic/tests/testthat/_snaps/bbox.md |only rasterpic-0.5.0/rasterpic/DESCRIPTION | 28 rasterpic-0.5.0/rasterpic/MD5 | 74 rasterpic-0.5.0/rasterpic/NAMESPACE | 20 rasterpic-0.5.0/rasterpic/NEWS.md | 78 rasterpic-0.5.0/rasterpic/R/asp_ratio.R | 75 rasterpic-0.5.0/rasterpic/R/rasterpic-package.R | 14 rasterpic-0.5.0/rasterpic/R/rasterpic_img.R | 907 ++++++---- rasterpic-0.5.0/rasterpic/R/test_helpers.R | 5 rasterpic-0.5.0/rasterpic/R/utils.R | 70 rasterpic-0.5.0/rasterpic/README.md | 64 rasterpic-0.5.0/rasterpic/build/vignette.rds |binary rasterpic-0.5.0/rasterpic/inst/CITATION | 36 rasterpic-0.5.0/rasterpic/inst/WORDLIST | 36 rasterpic-0.5.0/rasterpic/inst/doc/rasterpic.R | 13 rasterpic-0.5.0/rasterpic/inst/doc/rasterpic.html | 51 rasterpic-0.5.0/rasterpic/inst/doc/rasterpic.qmd | 53 rasterpic-0.5.0/rasterpic/inst/schemaorg.json | 8 rasterpic-0.5.0/rasterpic/man/asp_ratio.Rd | 61 rasterpic-0.5.0/rasterpic/man/rasterpic-package.Rd | 57 rasterpic-0.5.0/rasterpic/man/rasterpic_img.Rd | 546 +++--- rasterpic-0.5.0/rasterpic/tests/testthat/_snaps/errors_messages.md | 24 rasterpic-0.5.0/rasterpic/tests/testthat/_snaps/nlayers.md | 8 rasterpic-0.5.0/rasterpic/tests/testthat/_snaps/online.md | 3 rasterpic-0.5.0/rasterpic/tests/testthat/_snaps/s3.md |only rasterpic-0.5.0/rasterpic/tests/testthat/test-alignment.R | 133 - rasterpic-0.5.0/rasterpic/tests/testthat/test-asp_ratio.R | 6 rasterpic-0.5.0/rasterpic/tests/testthat/test-bbox.R | 125 - rasterpic-0.5.0/rasterpic/tests/testthat/test-crop_mask.R | 479 ++--- rasterpic-0.5.0/rasterpic/tests/testthat/test-errors_messages.R | 220 +- rasterpic-0.5.0/rasterpic/tests/testthat/test-expand.R | 24 rasterpic-0.5.0/rasterpic/tests/testthat/test-fileformat.R | 2 rasterpic-0.5.0/rasterpic/tests/testthat/test-nlayers.R | 5 rasterpic-0.5.0/rasterpic/tests/testthat/test-online.R | 54 rasterpic-0.5.0/rasterpic/tests/testthat/test-s3.R |only rasterpic-0.5.0/rasterpic/tests/testthat/test-sfg.R | 130 - rasterpic-0.5.0/rasterpic/tests/testthat/test-spatextent.R | 110 - rasterpic-0.5.0/rasterpic/tests/testthat/test-stars.R |only rasterpic-0.5.0/rasterpic/tests/testthat/test-vector.R | 125 - rasterpic-0.5.0/rasterpic/vignettes/rasterpic.qmd | 53 40 files changed, 2022 insertions(+), 1675 deletions(-)
Title: Weighting and Estimation for Panel Data with Non-Response
Description: Functions to calculate weights, estimates of changes and corresponding variance estimates for panel data with non-response. Partially overlapping samples are handled. Initially, weights are calculated by linear calibration. By default, the 'survey' package is used for this purpose. It is also possible to use 'ReGenesees', which can be installed from <https://github.com/DiegoZardetto/ReGenesees>. Variances of linear combinations (changes and averages) and ratios are calculated from a covariance matrix based on residuals according to the calibration model. The methodology was presented at the conference, The Use of R in Official Statistics, and is described in Langsrud (2016) <http://www.revistadestatistica.ro/wp-content/uploads/2016/06/RRS2_2016_A021.pdf>.
Author: Oeyvind Langsrud [aut, cre]
Maintainer: Oeyvind Langsrud <oyl@ssb.no>
Diff between CalibrateSSB versions 1.3.0 dated 2020-08-04 and 1.4.0 dated 2026-05-21
DESCRIPTION | 25 +- MD5 | 46 ++--- NEWS.md | 11 + R/CalibrateSSB-package.R | 3 R/CalibrateSSB.R | 62 ++++++- R/etosFunctions.R | 8 R/impVekt.R | 4 R/lagVekter.R | 13 - R/setAndGetTotal.R | 2 man/AkuData.Rd | 54 +++--- man/CalSSBobj.Rd | 156 ++++++++--------- man/CalSSBobjReGenesees.Rd | 126 +++++++------- man/CalibrateSSB-package.Rd | 82 +++++---- man/CalibrateSSB.Rd | 385 +++++++++++++++++++++++--------------------- man/CalibrateSSBpanel.Rd | 60 +++--- man/CrossStrata.Rd | 66 +++---- man/LinCombMatrix.Rd | 184 ++++++++++----------- man/MatchVarNames.Rd | 60 +++--- man/OrderedVarNames.Rd | 50 ++--- man/PanelEstimation.Rd | 230 +++++++++++++------------- man/WideFromCalibrate.Rd | 74 ++++---- man/print.calSSB.Rd | 44 ++--- man/print.calSSBwide.Rd | 44 ++--- man/testDataBasis.Rd | 22 +- 24 files changed, 960 insertions(+), 851 deletions(-)
Title: Conduct Additional Modeling and Analysis for 'seminr'
Description: Supplementary tools for evaluating and validating partial least
squares structural equation models estimated with 'seminr'. Provides methods
for predictive model assessment, importance-performance analysis with
necessary condition testing, overfitting diagnostics, measurement model
verification, mediator contribution analysis, unobserved heterogeneity
detection via latent class and prediction-oriented segmentation, and
congruence coefficient testing. All functions accept estimated 'seminr'
model objects and return results with print, summary, and plot methods.
Author: Soumya Ray [aut, ths],
Nicholas Patrick Danks [aut, cre]
Maintainer: Nicholas Patrick Danks <nicholasdanks@hotmail.com>
Diff between seminrExtras versions 1.0.0 dated 2026-04-29 and 1.0.1 dated 2026-05-21
DESCRIPTION | 7 MD5 | 28 +-- NEWS.md | 10 + inst/doc/SEMinRExtras.R | 11 - inst/doc/SEMinRExtras.Rmd | 11 - inst/doc/SEMinRExtras.html | 75 ++++------ tests/testthat/test-cipma-comprehensive.R | 6 tests/testthat/test-coa.R | 4 tests/testthat/test-cta.R | 3 tests/testthat/test-cvpat-comprehensive.R | 115 +++++---------- tests/testthat/test-cvpat.R | 221 ++++++++++++++---------------- tests/testthat/test-fimix.R | 7 tests/testthat/test-pcm.R | 1 tests/testthat/test-pos.R | 3 vignettes/SEMinRExtras.Rmd | 11 - 15 files changed, 227 insertions(+), 286 deletions(-)
Title: qPCR Data Analysis
Description: Tools for qPCR data analysis using Delta Ct and Delta Delta Ct methods, including t-test, Wilcoxon-test, ANOVA models, and publication-ready visualizations. The package supports multiple target, and multiple reference genes, and uses a calculation framework adopted from Ganger et al. (2017) <doi:10.1186/s12859-017-1949-5> and Taylor et al. (2019) <doi:10.1016/j.tibtech.2018.12.002>, covering both the Livak and Pfaffl methods.
Author: Ghader Mirzaghaderi [aut, cre, cph]
Maintainer: Ghader Mirzaghaderi <mirzaghaderi@gmail.com>
Diff between rtpcr versions 2.1.7 dated 2026-04-13 and 2.1.8 dated 2026-05-21
DESCRIPTION | 6 +++--- MD5 | 7 ++++--- NEWS.md | 5 +++++ R/meanTech.R | 12 ++++-------- vignettes/--find-assets.html |only 5 files changed, 16 insertions(+), 14 deletions(-)
Title: Estimate Parameters of Mixtures of Logistic Regressions
Description: Mixture of logistic regressions parameters (H)estimation with
(U)spectral methods. The main methods take d-dimensional inputs and a vector
of binary outputs, and return parameters according to the GLMs mixture model
(General Linear Model). For more details see chapter 3 in the PhD thesis of
Mor-Absa Loum: <https://theses.fr/s156435>, available here
<https://theses.hal.science/tel-01877796/document>.
Author: Benjamin Auder [aut, cre],
Mor-Absa Loum [aut]
Maintainer: Benjamin Auder <benjamin.auder@universite-paris-saclay.fr>
This is a re-admission after prior archival of version 1.0-4 dated 2023-02-09
Diff between morpheus versions 1.0-4 dated 2023-02-09 and 1.0-5 dated 2026-05-21
DESCRIPTION | 26 ++++++--- LICENSE | 4 - MD5 | 45 +++++++++------- NAMESPACE | 3 + R/A_NAMESPACE.R | 2 R/multiRun.R | 32 ++++++++--- R/optimParams.R | 2 R/plot.R | 83 ++++++++++++++++--------------- R/utils.R | 30 +++++++++++ build/partial.rdb |binary inst |only man/multiRun.Rd | 20 ++++--- man/normalize.Rd | 1 man/optimParams.Rd | 2 man/plotBox.Rd | 18 +++--- man/plotCoefs.Rd | 19 +++---- man/plotHist.Rd | 17 +++--- man/pvalue.Rd |only tests/testthat/test-alignMatrices.R | 2 tests/testthat/test-computeMu.R | 1 tests/testthat/test-hungarianAlgorithm.R | 1 tests/testthat/test-jointDiag.R | 2 tests/testthat/test-optimParams.R | 2 23 files changed, 197 insertions(+), 115 deletions(-)
Title: Case Classification and Selection Based on Regression Results
Description: Researchers doing a mixed-methods analysis (nested analysis as
developed by Lieberman (2005) <doi:10.1017/S0003055405051762>) can
use the package for the classification of cases and case selection using
results of a linear regression. One can designate cases
as typical, deviant, extreme and pathway case and use different case
selection strategies for the choice of a case belonging to one of
these types.
Author: Ingo Rohlfing [aut, cre]
Maintainer: Ingo Rohlfing <ingo.rohlfing@uni-passau.de>
This is a re-admission after prior archival of version 0.1.0 dated 2020-06-03
Diff between MMRcaseselection versions 0.1.0 dated 2020-06-03 and 0.2.0 dated 2026-05-21
DESCRIPTION | 18 - MD5 | 54 ++- NEWS.md |only R/classification.R | 14 - R/deviant.R | 8 R/extreme.R | 8 R/most_typical.R | 4 R/pathway.R | 10 README.md | 32 +- build/partial.rdb |only build/vignette.rds |binary inst/doc/Classification-as-typical-and-deviant.R | 6 inst/doc/Classification-as-typical-and-deviant.html | 277 ++++++++++++-------- inst/doc/Extreme-case.R | 2 inst/doc/Extreme-case.html | 265 +++++++++++-------- inst/doc/Most-typical-and-most-deviant.R | 2 inst/doc/Most-typical-and-most-deviant.html | 213 +++++++++------ inst/doc/Pathway-case.R | 6 inst/doc/Pathway-case.html | 254 ++++++++++++------ man/extreme_on_x.Rd | 2 man/extreme_on_y.Rd | 2 man/most_deviant.Rd | 2 man/most_typical.Rd | 2 man/pathway.Rd | 4 man/pathway_xvr.Rd | 2 man/predint.Rd | 2 man/predint_plot.Rd | 4 man/residstd.Rd | 2 man/residstd_plot.Rd | 2 29 files changed, 750 insertions(+), 447 deletions(-)
More information about MMRcaseselection at CRAN
Permanent link
Title: Easy Access to Model Information for Various Model Objects
Description: A tool to provide an easy, intuitive and consistent
access to information contained in various R models, like model
formulas, model terms, information about random effects, data that was
used to fit the model or data from response variables. 'insight'
mainly revolves around two types of functions: Functions that find
(the names of) information, starting with 'find_', and functions that
get the underlying data, starting with 'get_'. The package has a
consistent syntax and works with many different model objects, where
otherwise functions to access these information are missing.
Author: Daniel Luedecke [aut, cre] ,
Dominique Makowski [aut, ctb] ,
Indrajeet Patil [aut, ctb] ,
Philip Waggoner [aut, ctb] ,
Mattan S. Ben-Shachar [aut, ctb] ,
Brenton M. Wiernik [aut, ctb] ,
Vincent Arel-Bundock [aut, ctb] ,
Etienne Bacher [aut, ctb] ,
Ale [...truncated...]
Maintainer: Daniel Luedecke <officialeasystats@gmail.com>
Diff between insight versions 1.5.0 dated 2026-04-14 and 1.5.1 dated 2026-05-21
DESCRIPTION | 10 MD5 | 74 +++---- NAMESPACE | 24 ++ NEWS.md | 34 +++ R/find_algorithm.R | 10 R/find_parameters_bayesian.R | 15 + R/format_bf.R | 51 +++- R/format_table.R | 7 R/get_data.R | 14 + R/get_df.R | 8 R/get_df_kenward-rogers.R | 199 ++++++++++++------- R/get_parameters_bayesian.R | 14 + R/get_response.R | 12 + R/get_varcov.R | 41 +-- R/get_varcov_fpc.R |only R/get_varcov_sandwich.R | 19 + R/has_intercept.R | 19 + R/standardize_column_order.R | 4 R/standardize_names.R | 19 - R/utils_model_info.R | 6 build/partial.rdb |binary build/vignette.rds |binary inst/doc/display.html | 370 ++++++++++++++++++------------------ man/format_bf.Rd | 6 man/get_df.Rd | 8 man/get_predicted.Rd | 15 + man/get_predicted_ci.Rd | 15 + man/get_varcov.Rd | 20 + man/has_intercept.Rd | 4 man/insight-package.Rd | 1 man/vcovFPC.Rd |only tests/testthat/test-format.R | 32 +++ tests/testthat/test-format_table.R | 18 - tests/testthat/test-get_simulated.R | 1 tests/testthat/test-has_intercept.R | 49 +++- tests/testthat/test-htest.R | 34 +++ tests/testthat/test-mira.R |only tests/testthat/test-model_info.R | 2 tests/testthat/test-rstanarm.R | 3 tests/testthat/test-vcov_fpc.R |only 40 files changed, 757 insertions(+), 401 deletions(-)
Title: Coefficient of Variation (CV) with Confidence Intervals (CI)
Description: Provides some easy-to-use functions and classes to calculate
variability measures such as coefficient of variation with confidence
intervals provided with all available methods. References are
'Panichkitkosolkul' (2013) <doi:10.1155/2013/324940>,
'Altunkaynak' & 'Gamgam' (2018) <doi:10.1080/03610918.2018.1435800>,
'Albatineh', 'Kibria', Wilcox & 'Zogheib' (2014) <doi:10.1080/02664763.2013.847405>.
Author: Maani Beigy [aut, cre]
Maintainer: Maani Beigy <manibeygi@gmail.com>
This is a re-admission after prior archival of version 1.0.0 dated 2019-08-06
Diff between cvcqv versions 1.0.0 dated 2019-08-06 and 1.0.3 dated 2026-05-21
DESCRIPTION | 26 MD5 | 105 NAMESPACE | 42 NEWS.md | 72 R/BootCoefQuartVar.R | 409 +-- R/BootCoefVar.R | 400 +-- R/CoefQuartVar.R | 348 +- R/CoefQuartVarCI.R | 760 +++--- R/CoefVar.R | 210 - R/CoefVarCI.R | 3336 +++++++++++++-------------- R/SampleQuantiles.R | 258 +- R/cqv_versatile.R | 802 +++--- R/cv_versatile.R | 2495 ++++++++++---------- README.md | 322 +- build/partial.rdb |only build/vignette.rds |binary inst/doc/cqv_versatile.R | 732 ++--- inst/doc/cqv_versatile.Rmd | 824 +++--- inst/doc/cqv_versatile.html | 933 ++++--- inst/doc/cv_versatile.R | 2532 ++++++++++---------- inst/doc/cv_versatile.Rmd | 2812 +++++++++++----------- inst/doc/cv_versatile.html | 1407 ++++++----- man/BootCoefQuartVar.Rd | 94 man/BootCoefVar.Rd | 92 man/CoefQuartVar.Rd | 80 man/CoefQuartVarCI.Rd | 166 - man/CoefVar.Rd | 84 man/CoefVarCI.Rd | 250 +- man/SampleQuantiles.Rd | 76 man/cqv_versatile.Rd | 154 - man/cv_versatile.Rd | 232 - man/figures/sticker.svg | 236 - tests/testthat.R | 8 tests/testthat/test_state_BootCoefQuartVar.R | 278 +- tests/testthat/test_state_BootCoefVar.R | 252 +- tests/testthat/test_state_CoefQuartVar.R | 348 +- tests/testthat/test_state_CoefQuartVarCI.R | 352 +- tests/testthat/test_state_CoefVar.R | 60 tests/testthat/test_state_CoefVarCI.R | 2092 ++++++++-------- tests/testthat/test_state_R.R | 102 tests/testthat/test_state_SampleQuantiles.R | 84 tests/testthat/test_state_alpha.R | 118 tests/testthat/test_state_cqv_versatile.R | 630 ++--- tests/testthat/test_state_cv_versatile.R | 1795 +++++++------- tests/testthat/test_state_digits.R | 428 +-- tests/testthat/test_state_na_rm.R | 194 - tests/testthat/test_state_names.R | 64 tests/testthat/test_state_probs.R | 120 tests/testthat/test_state_type.R | 34 tests/testthat/test_state_x.R | 410 +-- vignettes/apa.csl | 1550 ++++++------ vignettes/cqv_versatile.Rmd | 824 +++--- vignettes/cv_versatile.Rmd | 2812 +++++++++++----------- vignettes/cvcqv.bib | 282 +- 54 files changed, 16731 insertions(+), 16395 deletions(-)
Title: Oncology Extension Package for ADaM in 'R' Asset Library
Description: Programming oncology specific Clinical Data Interchange
Standards Consortium (CDISC) compliant Analysis Data Model (ADaM)
datasets in 'R'. ADaM datasets are a mandatory part of any New Drug or
Biologics License Application submitted to the United States Food and
Drug Administration (FDA). Analysis derivations are implemented in
accordance with the "Analysis Data Model Implementation Guide" (CDISC
Analysis Data Model Team (2021),
<https://www.cdisc.org/standards/foundational/adam>). The package is
an extension package of the 'admiral' package.
Author: Stefan Bundfuss [aut, cre],
Amit Jain [aut],
Vinh Nguyen [aut],
Olga Starostecka [aut],
Kiran Peddamudium [aut],
Tomoyuki Namai [aut],
Ross Farrugia [aut],
Yirong Cao [ctb],
Ashwini Weber [ctb],
F. Hoffmann-La Roche AG [cph, fnd],
GlaxoSmithKline LLC [...truncated...]
Maintainer: Stefan Bundfuss <stefan.bundfuss@external.roche.com>
Diff between admiralonco versions 1.4.0 dated 2026-01-29 and 1.4.1 dated 2026-05-21
DESCRIPTION | 51 +++++++------ MD5 | 80 ++++++++++----------- NEWS.md | 9 ++ R/admiralonco-package.R | 33 ++++++--- README.md | 2 build/vignette.rds |binary inst/WORDLIST | 4 - inst/doc/admiralonco.html | 13 +-- inst/doc/adrs.Rmd | 2 inst/doc/adrs.html | 131 +++++++++++++++++++---------------- inst/doc/adrs_basic.Rmd | 2 inst/doc/adrs_basic.html | 41 +++++------ inst/doc/adrs_gcig.Rmd | 2 inst/doc/adrs_gcig.html | 132 +++++++++++++++++++----------------- inst/doc/adrs_imwg.html | 18 +++- inst/doc/adrs_pcwg3.html | 135 +++++++++++++++++++------------------ inst/doc/adtr.Rmd | 2 inst/doc/adtr.html | 7 + inst/doc/adtte.Rmd | 4 - inst/doc/adtte.html | 9 +- inst/doc/irecist.html | 5 - inst/doc/nactdt.html | 5 - man/admiralonco-package.Rd | 3 man/date_source.Rd | 14 +-- man/derive_param_bor.Rd | 14 +-- man/derive_param_clinbenefit.Rd | 14 +-- man/derive_param_confirmed_bor.Rd | 14 +-- man/derive_param_confirmed_resp.Rd | 14 +-- man/derive_param_response.Rd | 14 +-- man/event_objects.Rd | 1 man/figures/gsk_logo.png |binary man/figures/roche_logo.png |binary man/filter_pd.Rd | 14 +-- man/get_crpr_dataset.Rd | 2 man/signal_crpr.Rd | 2 man/tte_source_objects.Rd | 1 vignettes/adrs.Rmd | 2 vignettes/adrs_basic.Rmd | 2 vignettes/adrs_gcig.Rmd | 2 vignettes/adtr.Rmd | 2 vignettes/adtte.Rmd | 4 - 41 files changed, 431 insertions(+), 375 deletions(-)
Title: Fetch Data from Yahoo Finance API
Description: Obtain historical and near real time data related to stocks, index
and currencies from the Yahoo Finance API. This package is community maintained
and is not officially supported by 'Yahoo'. The accuracy of data is only as
correct as provided on <https://finance.yahoo.com/>.
Author: Aravind Hebbali [aut, cre]
Maintainer: Aravind Hebbali <hebbali.aravind@gmail.com>
Diff between yahoofinancer versions 0.4.0 dated 2024-11-14 and 0.5.0 dated 2026-05-21
yahoofinancer-0.4.0/yahoofinancer/R/index.R |only yahoofinancer-0.4.0/yahoofinancer/man/Index-class.Rd |only yahoofinancer-0.5.0/yahoofinancer/DESCRIPTION | 12 yahoofinancer-0.5.0/yahoofinancer/MD5 | 47 yahoofinancer-0.5.0/yahoofinancer/NAMESPACE | 3 yahoofinancer-0.5.0/yahoofinancer/NEWS.md | 18 yahoofinancer-0.5.0/yahoofinancer/R/base.R |only yahoofinancer-0.5.0/yahoofinancer/R/indice.R |only yahoofinancer-0.5.0/yahoofinancer/R/others.R | 41 yahoofinancer-0.5.0/yahoofinancer/R/ticker.R | 475 +--------- yahoofinancer-0.5.0/yahoofinancer/R/tickers.R |only yahoofinancer-0.5.0/yahoofinancer/R/utils.R | 23 yahoofinancer-0.5.0/yahoofinancer/README.md | 20 yahoofinancer-0.5.0/yahoofinancer/man/Indice-class.Rd |only yahoofinancer-0.5.0/yahoofinancer/man/Ticker-class.Rd | 289 +----- yahoofinancer-0.5.0/yahoofinancer/man/Tickers.Rd |only yahoofinancer-0.5.0/yahoofinancer/man/YahooFinanceBase-class.Rd |only yahoofinancer-0.5.0/yahoofinancer/man/validate.Rd | 40 yahoofinancer-0.5.0/yahoofinancer/tests/testthat/helper-mocks.R |only yahoofinancer-0.5.0/yahoofinancer/tests/testthat/samples |only yahoofinancer-0.5.0/yahoofinancer/tests/testthat/test-currency.R | 86 + yahoofinancer-0.5.0/yahoofinancer/tests/testthat/test-index-success.R |only yahoofinancer-0.5.0/yahoofinancer/tests/testthat/test-index.R | 84 + yahoofinancer-0.5.0/yahoofinancer/tests/testthat/test-market-summary.R | 1 yahoofinancer-0.5.0/yahoofinancer/tests/testthat/test-ticker-success.R |only yahoofinancer-0.5.0/yahoofinancer/tests/testthat/test-ticker.R | 205 +++- yahoofinancer-0.5.0/yahoofinancer/tests/testthat/test-tickers.R |only yahoofinancer-0.5.0/yahoofinancer/tests/testthat/test-utils.R | 52 - 28 files changed, 585 insertions(+), 811 deletions(-)
Title: 'SAS'-Style 'PROC FORMAT' for R
Description: Provides 'SAS' 'PROC FORMAT'-like functionality for creating and applying
value formats in R. Supports discrete and range-based mapping of values to labels,
reverse formatting (invalue), date/time/datetime formatting with built-in 'SAS' format
names, multi-label formats, expression labels evaluated at apply-time,
case-insensitive matching, import/export of format definitions, and proper handling
of missing values (NA, NULL, NaN).
Author: Vladimir Larchenko [aut, cre],
Igor Aleschenkov [aut]
Maintainer: Vladimir Larchenko <vladimir.larchenko@keystatsolutions.com>
Diff between ksformat versions 0.4.2 dated 2026-03-28 and 0.7.1 dated 2026-05-21
DESCRIPTION | 11 MD5 | 71 + NAMESPACE | 9 NEWS.md |only R/cheatsheet.R | 2 R/format_apply.R | 608 +++++++++++++-- R/format_create.R | 301 +++++++ R/format_invalue.R | 93 ++ R/format_library_app.R |only R/format_parse.R | 467 +++++++++++ R/ksformat-package.R | 2 R/utilities.R | 998 ++++++++++++++++++++++++ README.md | 18 build/vignette.rds |binary inst/doc/ksformat-Cheat-Sheet.pdf |binary inst/doc/ksformat-cheatsheet.html | 173 +--- inst/doc/usage_examples.R | 508 ++++++++++++ inst/doc/usage_examples.Rmd | 771 +++++++++++++++++++ inst/doc/usage_examples.html | 1083 ++++++++++++++++++++++++-- inst/rstudio |only man/dot-expr_parse_cache.Rd |only man/dot-format_date_bound.Rd |only man/dot-format_library.Rd | 4 man/dot-sas_format_defaults.Rd | 4 man/fimport.Rd | 1 man/finput.Rd | 11 man/finputk.Rd |only man/flist.Rd |only man/fmap.Rd |only man/fmap_ranges.Rd |only man/fmap_strata.Rd |only man/fmap_to_ranges.Rd |only man/fnew.Rd | 94 ++ man/fnew_bid.Rd | 6 man/format_library_app.Rd |only man/fparse.Rd | 24 man/fprint.Rd | 5 man/fputk.Rd |only man/franges.Rd |only man/ksformat-package.Rd | 3 man/ksformat_cheatsheet.Rd | 2 tests/testthat/test-format-library-app.R |only tests/testthat/test-formats.R | 1245 +++++++++++++++++++++++++++++++ vignettes/usage_examples.Rmd | 771 +++++++++++++++++++ 44 files changed, 6900 insertions(+), 385 deletions(-)
Title: Euclidean Distance-Optimized Data Transformation
Description: A data transformation method which takes into account the special property of scale non-invariance with a breakpoint at 1 of the Euclidean distance.
Author: Jorn Lotsch [aut, cre] ,
Alfred Ultsch [aut]
Maintainer: Jorn Lotsch <j.lotsch@em.uni-frankfurt.de>
Diff between EDOtrans versions 0.2.5 dated 2024-04-14 and 0.3.5 dated 2026-05-21
DESCRIPTION | 26 ++++- MD5 | 17 ++- NAMESPACE | 6 + R/EDOtrans.R | 144 ++++++++++++++++++++++++------ R/RcppExports.R |only R/combinedModesParameters.R | 27 ++++- R/get_seed.R | 205 +++++++++++++++++++++++++++++++++++++++----- inst |only man/EDOtrans.Rd | 31 ++++-- man/get_seed.Rd |only src |only 11 files changed, 381 insertions(+), 75 deletions(-)
Title: Sequential Trial Emulation
Description: Implementation of sequential trial emulation for the analysis of observational databases.
The 'SEQTaRget' software accommodates time-varying treatments and confounders, as well as binary
and failure time outcomes. 'SEQTaRget' allows to compare both static and dynamic strategies,
can be used to estimate observational analogs of intention-to-treat
and per-protocol effects, and can adjust for potential selection bias
induced by losses-to-follow-up. (Paper to come).
Author: Ryan O'Dea [aut, cre] ,
Alejandro Szmulewicz [aut] ,
Tom Palmer [aut] ,
Paul Madley-Dowd [aut] ,
Miguel Hernan [aut] ,
The President and Fellows of Harvard College [cph]
Maintainer: Ryan O'Dea <ryan.odea@psi.ch>
Diff between SEQTaRget versions 1.4.1 dated 2026-03-31 and 1.4.2 dated 2026-05-21
SEQTaRget-1.4.1/SEQTaRget/R/internal_fatglmHelpers.R |only SEQTaRget-1.4.1/SEQTaRget/man/format.time.Rd |only SEQTaRget-1.4.2/SEQTaRget/DESCRIPTION | 14 SEQTaRget-1.4.2/SEQTaRget/MD5 | 122 + SEQTaRget-1.4.2/SEQTaRget/NAMESPACE | 3 SEQTaRget-1.4.2/SEQTaRget/NEWS.md | 23 SEQTaRget-1.4.2/SEQTaRget/R/SEQTaRget-package.R |only SEQTaRget-1.4.2/SEQTaRget/R/SEQestimate.R | 13 SEQTaRget-1.4.2/SEQTaRget/R/SEQexpand.R | 32 SEQTaRget-1.4.2/SEQTaRget/R/SEQopts.R | 38 SEQTaRget-1.4.2/SEQTaRget/R/SEQuential.R | 49 SEQTaRget-1.4.2/SEQTaRget/R/class_definitions.R | 12 SEQTaRget-1.4.2/SEQTaRget/R/class_setters.R | 14 SEQTaRget-1.4.2/SEQTaRget/R/internal_analysis.R | 34 SEQTaRget-1.4.2/SEQTaRget/R/internal_covariates.R | 10 SEQTaRget-1.4.2/SEQTaRget/R/internal_glmHelpers.R |only SEQTaRget-1.4.2/SEQTaRget/R/internal_hazard.R | 2 SEQTaRget-1.4.2/SEQTaRget/R/internal_misc.R | 238 ++- SEQTaRget-1.4.2/SEQTaRget/R/internal_models.R | 29 SEQTaRget-1.4.2/SEQTaRget/R/internal_multinomial.R | 11 SEQTaRget-1.4.2/SEQTaRget/R/internal_survival.R | 19 SEQTaRget-1.4.2/SEQTaRget/R/internal_weights.R | 23 SEQTaRget-1.4.2/SEQTaRget/build/vignette.rds |binary SEQTaRget-1.4.2/SEQTaRget/inst/doc/ITT.R | 1 SEQTaRget-1.4.2/SEQTaRget/inst/doc/ITT.Rmd | 1 SEQTaRget-1.4.2/SEQTaRget/inst/doc/ITT.html | 3 SEQTaRget-1.4.2/SEQTaRget/inst/doc/SEQuential.R | 3 SEQTaRget-1.4.2/SEQTaRget/inst/doc/SEQuential.Rmd | 3 SEQTaRget-1.4.2/SEQTaRget/inst/doc/SEQuential.html | 682 +++++------ SEQTaRget-1.4.2/SEQTaRget/inst/doc/censoring.R | 282 ++-- SEQTaRget-1.4.2/SEQTaRget/inst/doc/censoring.Rmd | 4 SEQTaRget-1.4.2/SEQTaRget/inst/doc/censoring.html | 328 +---- SEQTaRget-1.4.2/SEQTaRget/inst/doc/doseresponse.R | 1 SEQTaRget-1.4.2/SEQTaRget/inst/doc/doseresponse.Rmd | 1 SEQTaRget-1.4.2/SEQTaRget/inst/doc/doseresponse.html | 3 SEQTaRget-1.4.2/SEQTaRget/inst/doc/seqopts.R | 1 SEQTaRget-1.4.2/SEQTaRget/inst/doc/seqopts.Rmd | 29 SEQTaRget-1.4.2/SEQTaRget/inst/doc/seqopts.html | 121 + SEQTaRget-1.4.2/SEQTaRget/man/SEQTaRget-package.Rd |only SEQTaRget-1.4.2/SEQTaRget/man/SEQestimate.Rd | 4 SEQTaRget-1.4.2/SEQTaRget/man/SEQopts.Rd | 23 SEQTaRget-1.4.2/SEQTaRget/man/SEQoutput-class.Rd | 2 SEQTaRget-1.4.2/SEQTaRget/man/SEQuential.Rd | 6 SEQTaRget-1.4.2/SEQTaRget/man/bake_followup_spline.Rd |only SEQTaRget-1.4.2/SEQTaRget/man/clean_fastglm.Rd | 8 SEQTaRget-1.4.2/SEQTaRget/man/fit_glm.Rd |only SEQTaRget-1.4.2/SEQTaRget/man/format_time.Rd |only SEQTaRget-1.4.2/SEQTaRget/man/formula_vars.Rd |only SEQTaRget-1.4.2/SEQTaRget/man/inline.pred.Rd | 4 SEQTaRget-1.4.2/SEQTaRget/man/internal.model.Rd | 2 SEQTaRget-1.4.2/SEQTaRget/man/multinomial.Rd | 2 SEQTaRget-1.4.2/SEQTaRget/man/predict_model.Rd |only SEQTaRget-1.4.2/SEQTaRget/man/prepare.data_cached.Rd | 2 SEQTaRget-1.4.2/SEQTaRget/man/resolve_risk_times.Rd |only SEQTaRget-1.4.2/SEQTaRget/tests/testthat/setup.R |only SEQTaRget-1.4.2/SEQTaRget/tests/testthat/test_coefficients.R | 1 SEQTaRget-1.4.2/SEQTaRget/tests/testthat/test_coverage.R | 25 SEQTaRget-1.4.2/SEQTaRget/tests/testthat/test_hazard.R | 3 SEQTaRget-1.4.2/SEQTaRget/tests/testthat/test_misc.R | 121 + SEQTaRget-1.4.2/SEQTaRget/tests/testthat/test_parallel.R | 2 SEQTaRget-1.4.2/SEQTaRget/tests/testthat/test_parglm.R |only SEQTaRget-1.4.2/SEQTaRget/tests/testthat/test_setters.R | 19 SEQTaRget-1.4.2/SEQTaRget/tests/testthat/test_splines.R |only SEQTaRget-1.4.2/SEQTaRget/tests/testthat/test_survival.R | 59 SEQTaRget-1.4.2/SEQTaRget/vignettes/ITT.Rmd | 1 SEQTaRget-1.4.2/SEQTaRget/vignettes/SEQuential.Rmd | 3 SEQTaRget-1.4.2/SEQTaRget/vignettes/censoring.Rmd | 4 SEQTaRget-1.4.2/SEQTaRget/vignettes/doseresponse.Rmd | 1 SEQTaRget-1.4.2/SEQTaRget/vignettes/seqopts.Rmd | 29 69 files changed, 1468 insertions(+), 1002 deletions(-)
Title: Analyzing the Survey of Consumer Finances
Description: Analyze public-use micro data from the Survey of Consumer Finances.
Provides tools to download prepared data files, construct replicate-weighted
multiply imputed survey designs, compute descriptive statistics and model
estimates, and produce plots and tables. Methods follow design-based inference
for complex surveys and pooling across multiple imputations. See the package
website and the code book for background.
Author: Joseph Cohen [aut, cre]
Maintainer: Joseph Cohen <joseph.cohen@qc.cuny.edu>
Diff between scf versions 1.0.8 dated 2026-05-14 and 1.0.10 dated 2026-05-21
DESCRIPTION | 6 - MD5 | 18 +-- NEWS | 8 + R/scf_axis_text_x.R |only R/scf_pctile_sum.R | 194 ++++++++++++++++++++++++++++---------- R/scf_plot_cbar.R | 2 R/scf_plot_dbar.R | 2 R/scf_plot_dist.R | 2 R/utils-weighted.R |only inst/extdata/scf2022_mock_raw.rds |binary man/scf_pctile_sum.Rd | 27 +++-- 11 files changed, 187 insertions(+), 72 deletions(-)
Title: Ex Post Survey Data Harmonization
Description: Assist in reproducible retrospective (ex-post) harmonization
of data, particularly individual level survey data, by providing tools
for organizing metadata, standardizing the coding of variables, and
variable names and value labels, including missing values, and
documenting the data transformations, with the help of comprehensive
s3 classes.
Author: Daniel Antal [aut, cre] ,
Marta Kolczynska [ctb]
Maintainer: Daniel Antal <daniel.antal@dataobservatory.eu>
This is a re-admission after prior archival of version 0.2.7 dated 2026-01-14
Diff between retroharmonize versions 0.2.7 dated 2026-01-14 and 0.2.8 dated 2026-05-21
DESCRIPTION | 16 MD5 | 198 +-- NAMESPACE | 10 NEWS.md | 31 R/assertions.R | 47 R/concatenate.R | 69 - R/create_codebook.R | 126 + R/crosswalk.R | 162 +- R/document_survey_item.R | 76 - R/harmonize_na_values.R | 2 R/harmonize_survey_values.R | 123 - R/harmonize_survey_variables.R | 9 R/harmonize_values.R | 157 +- R/harmonize_var_names.R | 103 + R/labelled_spss_survey-print.R |only R/labelled_spss_survey-vctrs.R |only R/labelled_spss_survey.R | 1143 ------------------ R/labelled_spss_survey_arithmetic.R | 25 R/labelled_spss_survey_coercion.R | 1 R/merge_surveys.R | 104 + R/metadata_create.R | 222 ++- R/na_range_to_values.R | 19 R/pull_survey.R | 65 - R/read_csv.R | 159 +- R/read_dta.R | 125 + R/read_rds.R | 87 - R/read_spss.R | 168 +- R/read_surveys.R | 103 + R/retroharmonize.R | 2 R/subset_surveys.R | 60 R/survey.R | 28 R/survey_df.R | 30 R/utils.R | 8 inst/WORDLIST | 17 inst/doc/afrobarometer.html | 38 inst/doc/codelist.R | 2 inst/doc/codelist.Rmd | 2 inst/doc/codelist.html | 2 inst/doc/concept.Rmd | 2 inst/doc/concept.html | 8 inst/doc/crosswalk.html | 6 inst/doc/documentation.html | 6 inst/doc/harmonize_labels.html | 13 inst/doc/labelled_spss_survey.html | 18 inst/doc/metadata.html | 6 inst/doc/retroharmonize.html | 8 man/as_labelled_spss_survey.Rd | 2 man/collect_val_labels.Rd | 16 man/create_codebook.Rd | 13 man/crosswalk_surveys.Rd | 16 man/crosswalk_table_create.Rd | 32 man/document_survey_item.Rd | 72 - man/document_surveys.Rd | 4 man/harmonize_na_values.Rd | 16 man/harmonize_survey_values.Rd | 30 man/harmonize_survey_variables.Rd | 19 man/harmonize_values.Rd | 142 +- man/harmonize_var_names.Rd | 88 - man/label_normalize.Rd | 29 man/labelled_spss_survey.Rd | 102 - man/labelled_spss_survey_coercion.Rd | 4 man/labelled_spss_survey_vctrs.Rd | 35 man/merge_surveys.Rd | 68 - man/merge_waves.Rd |only man/metadata_create.Rd | 55 man/metadata_survey_create.Rd | 91 - man/na_range_to_values.Rd | 4 man/pull_survey.Rd | 69 - man/read_csv.Rd | 70 - man/read_dta.Rd | 71 - man/read_rds.Rd | 70 - man/read_spss.Rd | 96 - man/read_surveys.Rd | 93 - man/retroharmonize-package.Rd | 5 man/retroharmonize.Rd | 5 man/survey.Rd | 4 man/survey_df.Rd | 4 tests/testthat/_snaps |only tests/testthat/test-as_labelled_spss_survey.R |only tests/testthat/test-collect_val_labels.R | 7 tests/testthat/test-concatenate.R |only tests/testthat/test-create_codebook.R | 26 tests/testthat/test-crosswalk.R | 71 - tests/testthat/test-document_survey_item.R | 128 +- tests/testthat/test-harmonize_na_values.R | 57 tests/testthat/test-harmonize_survey_values.R | 40 tests/testthat/test-harmonize_values.R | 40 tests/testthat/test-harmonize_var_names.R |only tests/testthat/test-labelled_spss_survey-print.R |only tests/testthat/test-labelled_spss_survey-vctrs.R |only tests/testthat/test-labelled_spss_survey.R | 129 -- tests/testthat/test-labelled_spss_survey_arithmetic.R |only tests/testthat/test-merge_surveys.R | 9 tests/testthat/test-merge_surveys_harmonize_surveys.R | 76 - tests/testthat/test-metadata_create.R | 192 ++- tests/testthat/test-na_range_to_values.R | 12 tests/testthat/test-pull_survey.R | 147 ++ tests/testthat/test-read_csv.R | 99 + tests/testthat/test-read_dta.R |only tests/testthat/test-read_rds.R | 70 + tests/testthat/test-read_spss.R | 143 ++ tests/testthat/test-read_surveys.R | 131 ++ tests/testthat/test-survey_df.R | 21 tests/testthat/test-utils.R |only vignettes/codelist.Rmd | 2 vignettes/concept.Rmd | 2 106 files changed, 3349 insertions(+), 2984 deletions(-)
More information about retroharmonize at CRAN
Permanent link
Title: Miscellaneous Utilities for 'rerddap'
Description: The 'rerddapUtils' package is an 'R' package that is a set of four main
functions designed to work with and extend the 'rerddap' package. These functions includes one for restricting by season,
one for splitting large requests, and two for working with projected datasets. There are also two utility functions
that provide estimates of the size of a proposed 'rerddap::griddap()' request.
Author: Roy Mendelssohn [aut, cre]
Maintainer: Roy Mendelssohn <roy.mendelssohn@noaa.gov>
Diff between rerddapUtils versions 1.0.0 dated 2026-05-19 and 1.0.1 dated 2026-05-21
DESCRIPTION | 8 ++++---- MD5 | 20 ++++++++++---------- NEWS.md | 4 ++++ R/conversion.R | 12 +++++++----- R/griddap_season.R | 1 + R/griddap_split.R | 1 + data/proj_extract.rda |binary man/griddap_season.Rd | 1 + man/griddap_split.Rd | 1 + man/latlon_to_xy.Rd | 1 + man/xy_to_latlon.Rd | 11 ++++++----- 11 files changed, 36 insertions(+), 24 deletions(-)
Title: Causal Mediation Analysis in Presence of Multiple Mediators
Uncausally Related
Description: Estimates key quantities in causal mediation analysis - including
average causal mediation effects (indirect effects), average direct
effects, total effects, and proportions mediated - in the presence of
multiple uncausally related mediators. Methods are described by
Jerolon et al., (2021) <doi:10.1515/ijb-2019-0088> and extended to
accommodate survival outcomes as described by Domingo-Relloso et al.,
(2024) <doi:10.1101/2024.02.16.24302923>.
Author: Allan Jerolon [aut],
Arce Domingo-Relloso [aut],
Samara Kiihl [cre, aut],
Maria Tellez-Plaza [aut]
Maintainer: Samara Kiihl <samarak@unicamp.br>
Diff between multimediate versions 0.1.4 dated 2025-07-14 and 0.1.6 dated 2026-05-21
multimediate-0.1.4/multimediate/data/data1.csv |only multimediate-0.1.4/multimediate/data/data2.csv |only multimediate-0.1.4/multimediate/data/data3.csv |only multimediate-0.1.4/multimediate/data/data4.csv |only multimediate-0.1.4/multimediate/data/data5.csv |only multimediate-0.1.6/multimediate/DESCRIPTION | 12 multimediate-0.1.6/multimediate/MD5 | 32 multimediate-0.1.6/multimediate/R/functions_cor.R | 35 multimediate-0.1.6/multimediate/R/multimediate.R | 1838 ++++++++------ multimediate-0.1.6/multimediate/R/multimediate_survival.R | 18 multimediate-0.1.6/multimediate/README.md | 4 multimediate-0.1.6/multimediate/data/data1.csv.gz |only multimediate-0.1.6/multimediate/data/data2.csv.gz |only multimediate-0.1.6/multimediate/data/data3.csv.gz |only multimediate-0.1.6/multimediate/data/data4.csv.gz |only multimediate-0.1.6/multimediate/data/data5.csv.gz |only multimediate-0.1.6/multimediate/man/data1.Rd | 23 multimediate-0.1.6/multimediate/man/data2.Rd | 27 multimediate-0.1.6/multimediate/man/data3.Rd | 26 multimediate-0.1.6/multimediate/man/data4.Rd | 24 multimediate-0.1.6/multimediate/man/data5.Rd | 14 multimediate-0.1.6/multimediate/man/multimediate.Rd | 24 22 files changed, 1217 insertions(+), 860 deletions(-)
Title: Local Polynomial Density Estimation and Inference
Description: Implements local polynomial distribution and density methods for point estimation, inference and bandwidth selection, documented in Cattaneo, Jansson and Ma (2020) <doi:10.1080/01621459.2019.1635480>, Cattaneo, Jansson and Ma (2022) <doi:10.18637/jss.v101.i02>, and Cattaneo, Jansson and Ma (2024) <doi:10.1016/j.jeconom.2021.01.006>. lpdensity() constructs local polynomial distribution and density estimators with robust bias-corrected inference, and lpbwdensity() implements data-driven bandwidth selection.
Author: Matias D. Cattaneo [aut, cre],
Michael Jansson [aut],
Xinwei Ma [aut]
Maintainer: Matias D. Cattaneo <matias.d.cattaneo@gmail.com>
Diff between lpdensity versions 2.5 dated 2024-10-06 and 3.0 dated 2026-05-21
DESCRIPTION | 39 +++++------ MD5 | 51 +++++++------- R/lpbwdensity.R | 6 - R/lpbwdensity_fn.R | 159 +++++++++++++++++++-------------------------- R/lpbwdensity_methods.R | 18 ++--- R/lpdensity-package.R | 8 +- R/lpdensity.R | 6 - R/lpdensity_fn.R | 16 ++-- R/lpdensity_methods.R | 48 ++++++------- build/partial.rdb |binary inst/CITATION | 7 - man/coef.lpbwdensity.Rd | 6 - man/coef.lpdensity.Rd | 6 - man/confint.lpdensity.Rd | 6 - man/lpbwdensity.Rd | 6 - man/lpdensity-package.Rd | 8 +- man/lpdensity.Rd | 6 - man/lpdensity.plot.Rd | 6 - man/plot.lpdensity.Rd | 6 - man/print.lpbwdensity.Rd | 6 - man/print.lpdensity.Rd | 6 - man/summary.lpbwdensity.Rd | 6 - man/summary.lpdensity.Rd | 6 - man/vcov.lpdensity.Rd | 6 - tests |only 25 files changed, 212 insertions(+), 226 deletions(-)
Title: Analysis of Surface Plasmon Resonance Data
Description: Analysis of Surface Plasmon Resonance (SPR) and Biolayer Interferometry data, with automations for high-throughput SPR. This version of the package fits the 1: 1 binding model, with and without bulkshift. It offers optional local or global Rmax fitting. The user must provide a sample sheet and a Carterra output file in Carterra's current format. There is a utility function to convert from Carterra's old output format. The user may run a custom pipeline or use the provided 'Runscript', which will produce a pdf file containing fitted Rmax, ka, kd and standard errors, a plot of the sensorgram and fits, and a plot of residuals. The script will also produce a .csv file with all of the relevant parameters for each spot on the SPR chip.
Author: Janice McCarthy Developer [aut, cre, cph],
Kan Li Dev [aut],
S. Moses Dennison [aut],
Georgia D. Tomaras [aut]
Maintainer: Janice McCarthy Developer <janice.mccarthy@duke.edu>
This is a re-admission after prior archival of version 0.1.2 dated 2026-05-05
Diff between htrSPRanalysis versions 0.1.2 dated 2026-05-05 and 0.1.3 dated 2026-05-21
DESCRIPTION | 6 ++-- MD5 | 8 ++--- R/InputProcessingFunctions.R | 6 ---- R/UserFunctions.R | 64 +++++++++++++++++++++++++++++++++---------- man/process_input.Rd | 58 +++++++++++++++++++++++++++++++------- 5 files changed, 105 insertions(+), 37 deletions(-)
More information about htrSPRanalysis at CRAN
Permanent link
Title: Automated Eye Tracking Data Quality Determination for
Screen-Based Eye Trackers
Description: Compute common data quality metrics for accuracy, precision and data loss
for screen-based eye trackers. The package supports gaze input in screen pixels or
degrees and reports angular measures in degrees where appropriate. If you use this
package, please cite Niehorster, D.C., Nyström, M., Hessels, R.S., Benjamins, J.S.,
Andersson, R., and Hooge, I.T.C. (2026). The fundamentals of eye tracking part 7:
Determining data quality. Behavior Research Methods. <doi:10.3758/s13428-026-03039-4>.
Author: Diederick Niehorster [aut, cre, cph]
Maintainer: Diederick Niehorster <diederick_c.niehorster@humlab.lu.se>
Diff between ETDQualitizer versions 0.9.0 dated 2025-09-09 and 1.0.0 dated 2026-05-21
DESCRIPTION | 13 LICENSE | 2 MD5 | 20 R/ETDQualitizer.R | 1518 ++++++++++++++-------------- man/DataQuality.Rd | 4 man/compute_data_quality_from_validation.Rd | 5 man/report_data_quality_table.Rd | 5 tests/testthat/test-data_quality_class.R | 226 ++-- tests/testthat/test-data_quality_metrics.R | 150 +- tests/testthat/test-fick_conversions.R | 74 - tests/testthat/test-screen_configuration.R | 160 +- 11 files changed, 1109 insertions(+), 1068 deletions(-)
Title: Bayesian Estimation of the Temporal and Spatio-Temporal ETAS
Models for Earthquake Occurrences
Description: The Epidemic Type Aftershock Sequence (ETAS) model is widely
used for modelling and forecasting earthquake occurrences. This package
implements Bayesian estimation routines for both the temporal and spatial ETAS
model, allowing samples to be drawn from the full posterior distribution
of the model parameters given an earthquake catalogue. The methods are
described in Ross (2021) "Bayesian Estimation of the ETAS Model for
Earthquake Occurrences" <doi:10.1785/0120200198>.
Author: Gordon J. Ross [aut, cre]
Maintainer: Gordon J. Ross <gordon@gordonjross.co.uk>
This is a re-admission after prior archival of version 1.0.3 dated 2017-01-17
Diff between bayesianETAS versions 1.0.3 dated 2017-01-17 and 2.0.0 dated 2026-05-21
bayesianETAS-1.0.3/bayesianETAS/R/bayesianETAS-package.R |only bayesianETAS-1.0.3/bayesianETAS/R/maxLikelihoodETAS.R |only bayesianETAS-1.0.3/bayesianETAS/R/sampleETASposterior.R |only bayesianETAS-1.0.3/bayesianETAS/R/simulateETAS.R |only bayesianETAS-1.0.3/bayesianETAS/R/simulateNHPP.R |only bayesianETAS-1.0.3/bayesianETAS/man/bayesianETAS.Rd |only bayesianETAS-1.0.3/bayesianETAS/man/sampleETASposterior.Rd |only bayesianETAS-1.0.3/bayesianETAS/man/simulateNHPP.Rd |only bayesianETAS-1.0.3/bayesianETAS/src/Makevars |only bayesianETAS-2.0.0/bayesianETAS/DESCRIPTION | 30 bayesianETAS-2.0.0/bayesianETAS/MD5 | 26 bayesianETAS-2.0.0/bayesianETAS/NAMESPACE | 8 bayesianETAS-2.0.0/bayesianETAS/R/packagefiles.R |only bayesianETAS-2.0.0/bayesianETAS/inst |only bayesianETAS-2.0.0/bayesianETAS/man/estimateETAS.Rd |only bayesianETAS-2.0.0/bayesianETAS/man/maxLikelihoodETAS.Rd | 75 - bayesianETAS-2.0.0/bayesianETAS/man/simulateETAS.Rd | 72 - bayesianETAS-2.0.0/bayesianETAS/src/etas.cpp | 790 ++++++++----- bayesianETAS-2.0.0/bayesianETAS/src/init.c |only bayesianETAS-2.0.0/bayesianETAS/tests |only 20 files changed, 676 insertions(+), 325 deletions(-)
Title: Record Linkage Based on an Entropy-Maximizing Classifier
Description: The goal of 'automatedRecLin' is to perform record linkage (also known as entity resolution) in unsupervised or supervised settings. It compares pairs of records from two datasets using selected comparison functions to estimate the probability or density ratio between matched and non-matched records. Based on these estimates, it predicts a set of matches that maximizes entropy. For details see: Lee et al. (2022) <https://www150.statcan.gc.ca/n1/pub/12-001-x/2022001/article/00007-eng.htm>, Vo et al. (2023) <https://ideas.repec.org/a/eee/csdana/v179y2023ics0167947322002365.html>, Sugiyama et al. (2008) <doi:10.1007/s10463-008-0197-x>.
Author: Adam Struzik [aut, cre] ,
Maciej Beresewicz [aut, ctb]
Maintainer: Adam Struzik <adastr5@st.amu.edu.pl>
Diff between automatedRecLin versions 1.1.0 dated 2026-05-08 and 1.1.1 dated 2026-05-21
automatedRecLin-1.1.0/automatedRecLin/man/est_se_bootstrap.Rd |only automatedRecLin-1.1.1/automatedRecLin/DESCRIPTION | 9 automatedRecLin-1.1.1/automatedRecLin/MD5 | 27 automatedRecLin-1.1.1/automatedRecLin/NEWS.md | 5 automatedRecLin-1.1.1/automatedRecLin/R/bootstrap.R | 18 automatedRecLin-1.1.1/automatedRecLin/R/internals.R | 1644 ++++++++-- automatedRecLin-1.1.1/automatedRecLin/R/methods.R | 12 automatedRecLin-1.1.1/automatedRecLin/R/unsupervised_learning.R | 807 ---- automatedRecLin-1.1.1/automatedRecLin/inst/doc/mec-blocking.R | 12 automatedRecLin-1.1.1/automatedRecLin/inst/doc/mec-blocking.Rmd | 16 automatedRecLin-1.1.1/automatedRecLin/inst/doc/mec-blocking.html | 87 automatedRecLin-1.1.1/automatedRecLin/inst/tinytest/test_mec_blocking.R | 133 automatedRecLin-1.1.1/automatedRecLin/man/mec_blocking.Rd | 131 automatedRecLin-1.1.1/automatedRecLin/tests/tinytest.R | 16 automatedRecLin-1.1.1/automatedRecLin/vignettes/mec-blocking.Rmd | 16 15 files changed, 1744 insertions(+), 1189 deletions(-)
More information about automatedRecLin at CRAN
Permanent link
Title: Bayesian Multivariate GARCH Models
Description: Fit Bayesian multivariate GARCH models using 'Stan' for full Bayesian inference. Generate (weighted) forecasts for means, variances (volatility) and correlations. Currently DCC(P,Q), CCC(P,Q), pdBEKK(P,Q), and BEKK(P,Q) parameterizations are implemented, alongside a constant covariance baseline (that can be used for testing whether GARCH is warranted), based either on a multivariate gaussian normal or student-t distribution. DCC and CCC models are based on Engle (2002) <doi:10.1198/073500102288618487> and Bollerslev (1990). The BEKK parameterization follows Engle and Kroner (1995) <doi:10.1017/S0266466600009063> while the pdBEKK as well as the estimation approach for this package is described in Rast et al. (2020) <doi:10.31234/osf.io/j57pk>. The fitted models contain 'rstan' objects and can be examined with 'rstan' functions.
Author: Philippe Rast [aut, cre] ,
Stephen Martin [aut]
Maintainer: Philippe Rast <rast.ph@gmail.com>
Diff between bmgarch versions 2.0.0 dated 2023-09-11 and 2.1.0 dated 2026-05-21
DESCRIPTION | 19 MD5 | 95 NAMESPACE | 2 NEWS.md | 55 R/bmgarch-package.R | 7 R/bmgarch.R | 99 R/cmdstan_path.R |only R/forecasting_gq.R | 16 R/helper.R | 22 R/lfocv.R | 35 R/model_weights.R | 8 R/print.R | 119 R/stanmodels.R | 4 R/zzz.R | 12 README.md | 2 build/partial.rdb |binary inst/REFERENCES.bib | 15 inst/auto/REFERENCES.el | 6 inst/stan/CCCMGARCH.stan | 4 inst/stan/DCCMGARCH.stan | 2 inst/stan/constMGARCH.stan |only inst/stan/forecastConst.stan |only inst/stan/functions/jacobian.stan | 2 man/bmgarch-package.Rd | 10 man/bmgarch.Rd | 7 man/dot-colQTs.Rd | 2 man/dot-extract_param_list.Rd |only man/dot-f_MA.Rd | 10 man/dot-f_array_x_mat.Rd | 8 man/dot-get_target_stan_path.Rd |only man/dot-pred_array_to_df.Rd | 2 man/dot-qtile.Rd | 2 man/supported_models.Rd | 4 src/Makevars | 2 src/RcppExports.cpp | 4 src/stanExports_BEKKMGARCH.cc | 34 src/stanExports_BEKKMGARCH.h | 3889 +++++++++++++--------------- src/stanExports_CCCMGARCH.cc | 34 src/stanExports_CCCMGARCH.h | 4369 ++++++++++++++----------------- src/stanExports_DCCMGARCH.cc | 34 src/stanExports_DCCMGARCH.h | 5235 +++++++++++++++++--------------------- src/stanExports_constMGARCH.cc |only src/stanExports_constMGARCH.h |only src/stanExports_forecastBEKK.cc | 34 src/stanExports_forecastBEKK.h | 4072 +++++++++++++---------------- src/stanExports_forecastCCC.cc | 34 src/stanExports_forecastCCC.h | 3823 ++++++++++++--------------- src/stanExports_forecastConst.cc |only src/stanExports_forecastConst.h |only src/stanExports_forecastDCC.cc | 34 src/stanExports_forecastDCC.h | 4862 ++++++++++++++++------------------- src/stanExports_pdBEKKMGARCH.cc | 34 src/stanExports_pdBEKKMGARCH.h | 4889 ++++++++++++++++------------------- 53 files changed, 14800 insertions(+), 17152 deletions(-)
Title: Sparse Three-Dimensional Arrays and Linear Algebra Utilities
Description: Defines sparse three-dimensional arrays
and supports standard operations on them.
The package also includes utility functions for
matrix calculations that are common in
statistics, such as quadratic forms.
Author: Adrian Baddeley [aut, cre, cph] ,
Rolf Turner [aut, cph] ,
Ege Rubak [aut, cph]
Maintainer: Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>
Diff between spatstat.sparse versions 3.1-0 dated 2024-06-21 and 3.2-0 dated 2026-05-21
DESCRIPTION | 18 ++++---- MD5 | 45 +++++++++++--------- NAMESPACE | 7 +++ NEWS | 35 ++++++++++++++++ R/halfmatrix.R |only R/linalg.R | 27 +++++++----- R/matrixpower.R | 3 - R/sparse3Darray.R | 55 +++++++++++++++++-------- R/sparseMarkov.R |only R/sparsecommon.R | 87 ++++++++++++++++++++++++++++++++-------- R/sparselinalg.R | 18 ++++---- inst/doc/packagesizes.txt | 1 inst/info/packagesizes.txt | 1 man/macros/defns.Rd | 36 +++++++++++----- man/methods.sparse3Darray.Rd | 12 ++++- man/runSparseMarkovChain.Rd |only man/spatstat.sparse-internal.Rd | 8 ++- man/spatstat.sparse-package.Rd | 7 ++- man/sumouter.Rd | 1 man/sumsymouter.Rd |only man/symmatrix.Rd |only src/init.c | 2 src/proto.h | 2 src/rmarkovchain.c |only src/spasumsymout.h | 4 - tests/sparse3Darrays.R | 69 ++++++++++++++++++++++++------- tests/sparsemarkov.R |only 27 files changed, 323 insertions(+), 115 deletions(-)
More information about spatstat.sparse at CRAN
Permanent link
Title: Introductory Statistics with R
Description: Data sets and scripts for text examples and exercises in
P. Dalgaard (2008), `Introductory Statistics with R', 2nd ed., Springer Verlag, ISBN 978-0387790534.
Author: Peter Dalgaard [aut, cre]
Maintainer: Peter Dalgaard <pd.mes@cbs.dk>
Diff between ISwR versions 2.0-11 dated 2025-10-23 and 2.0-12 dated 2026-05-21
DESCRIPTION | 8 +-- MD5 | 6 +- tests/allexercises.Rout.save | 12 ++--- tests/allscripts.Rout.save | 96 +++++++++++++++++++++---------------------- 4 files changed, 61 insertions(+), 61 deletions(-)
Title: Generalized Kumaraswamy Distribution Family
Description: Implements the five-parameter Generalized Kumaraswamy ('gkw')
distribution proposed by 'Carrasco, Ferrari and Cordeiro (2010)'
<doi:10.48550/arXiv.1004.0911> and its seven nested sub-families for
modeling bounded continuous data on the unit interval (0,1). The 'gkw'
distribution extends the Kumaraswamy distribution described by Jones (2009)
<doi:10.1016/j.stamet.2008.04.001>. Provides density, distribution,
quantile, and random generation functions, along with analytical
log-likelihood, gradient, and Hessian functions implemented in 'C++' via
'RcppArmadillo' for maximum computational efficiency. Suitable for modeling
proportions, rates, percentages, and indices exhibiting complex features
such as asymmetry, or heavy tails and other shapes not adequately captured by
standard distributions like simple Beta or Kumaraswamy.
Author: Jose Evandeilton Lopes [aut, cre]
Maintainer: Jose Evandeilton Lopes <evandeilton@gmail.com>
Diff between gkwdist versions 1.1.2 dated 2026-01-08 and 1.1.3 dated 2026-05-21
DESCRIPTION | 6 MD5 | 20 NEWS.md | 64 + README.md | 1531 +++++++++++++++++++++---------------------- inst/doc/into-gkwdist.html | 43 - inst/doc/theory-gkwdist.html | 4 src/bkw.cpp | 23 src/ekw.cpp | 57 - src/gkw.cpp | 71 - src/gkwinit.cpp | 23 src/utils.h | 22 11 files changed, 930 insertions(+), 934 deletions(-)
Title: Dendrochronology Program Library in R
Description: Perform tree-ring analyses such as detrending, chronology
building, and cross dating. Read and write standard file formats
used in dendrochronology.
Author: Andy Bunn [aut, cph, cre, trl],
Mikko Korpela [aut, cph, trl],
Franco Biondi [aut, cph],
Filipe Campelo [aut, cph],
Stefan Klesse [aut, cph],
Pierre Merian [aut, cph],
Fares Qeadan [aut, cph],
Christian Zang [aut, cph],
Allan Buras [ctb],
Alice Cecil [...truncated...]
Maintainer: Andy Bunn <bunna@wwu.edu>
Diff between dplR versions 1.7.8 dated 2025-01-30 and 1.7.9 dated 2026-05-21
ChangeLog | 74 ++++ DESCRIPTION | 6 MD5 | 54 +-- NAMESPACE | 3 R/bakker.R | 7 R/chron.ars.R | 91 +++-- R/rcs.R | 133 ++++---- R/rwi.stats.running.R | 732 +++++++++++++++++++++++------------------------ R/universalPOWT.R | 11 R/xdate.floater.R | 301 +++++++++++-------- man/ads.Rd | 4 man/caps.Rd | 2 man/ccf.series.rwl.Rd | 2 man/chron.ars.Rd | 98 ++++-- man/chron.stabilized.Rd | 2 man/csv2rwl.Rd | 2 man/detrend.series.Rd | 2 man/rcs.Rd | 108 +++++- man/read.crn.Rd | 2 man/read.tucson.Rd | 2 man/rwi.stats.running.Rd | 6 man/rwl.report.Rd | 6 man/ssf.Rd | 2 man/sss.Rd | 47 ++- man/treeMean.Rd | 2 man/write.crn.Rd | 2 man/write.tucson.Rd | 2 man/xdate.floater.Rd | 164 +++++++--- 28 files changed, 1140 insertions(+), 727 deletions(-)
Title: Grammar of Graphics for 'base' Plot
Description: A grammar of graphics framework built on 'base' graphics. It
provides a 'bbplot' object and a '+' operator to incrementally compose plots
from data, aesthetic mappings and layers, then render them using the base
plotting system. The package includes common geometric layers (points, lines,
segments, bars, histograms, boxplots and tiles), scales for color and other
aesthetics, legends, faceting, themes, and significance annotations.
Author: Guangchuang Yu [aut, cre, cph]
Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>
Diff between plotbb versions 0.1.1 dated 2026-01-30 and 0.1.2 dated 2026-05-21
DESCRIPTION | 6 +- MD5 | 25 +++++----- NAMESPACE | 2 NEWS.md | 8 +++ R/bb-density.R |only R/bb-lm.R | 105 ++++++++++++++++++++++++++++++------------ R/print.R | 74 ++++++++++++++++++++++++++--- R/scale.R | 107 ++++++++++++++++++++++++++++++++++--------- R/utilities.R | 35 +++++++++++++- build/vignette.rds |binary inst/doc/plotbb.html | 50 ++++++++++---------- man/bb_legend.Rd | 5 +- man/layer.Rd | 19 ++++++- tests/testthat/test-basics.R | 28 +++++++++++ 14 files changed, 356 insertions(+), 108 deletions(-)
Title: High Dimensional Analysis in Linked Spaces
Description: A 'shiny' GUI that performs high dimensional cluster analysis.
This tool performs data preparation, clustering and visualisation within a dynamic GUI.
With interactive methods allowing the user to change settings all without having to to leave the GUI.
An earlier version of this package was described in Laa and Valencia (2022) <doi:10.1140/epjp/s13360-021-02310-1>.
Author: Gabriel McCoy [aut, cre] ,
Ursula Laa [aut] ,
German Valencia [aut]
Maintainer: Gabriel McCoy <gabe.mccoy02@gmail.com>
Diff between pandemonium versions 0.2.4 dated 2025-11-03 and 1.0.0 dated 2026-05-21
pandemonium-0.2.4/pandemonium/man/chi2bins.Rd |only pandemonium-0.2.4/pandemonium/man/chi2score.Rd |only pandemonium-0.2.4/pandemonium/man/outsidescore.Rd |only pandemonium-1.0.0/pandemonium/DESCRIPTION | 26 pandemonium-1.0.0/pandemonium/MD5 | 145 pandemonium-1.0.0/pandemonium/NAMESPACE | 5 pandemonium-1.0.0/pandemonium/R/coordinates.R | 53 pandemonium-1.0.0/pandemonium/R/data.R | 1 pandemonium-1.0.0/pandemonium/R/dimensionReduction.R | 12 pandemonium-1.0.0/pandemonium/R/helper.R | 135 pandemonium-1.0.0/pandemonium/R/output.R | 59 pandemonium-1.0.0/pandemonium/R/plotting.R | 407 +- pandemonium-1.0.0/pandemonium/R/scores.R | 165 - pandemonium-1.0.0/pandemonium/R/server.R | 1515 +++++----- pandemonium-1.0.0/pandemonium/R/tourMaker.R | 128 pandemonium-1.0.0/pandemonium/R/ui.R | 550 ++- pandemonium-1.0.0/pandemonium/README.md | 13 pandemonium-1.0.0/pandemonium/inst/doc/analysis-pages.R | 10 pandemonium-1.0.0/pandemonium/inst/doc/analysis-pages.Rmd | 63 pandemonium-1.0.0/pandemonium/inst/doc/analysis-pages.html | 144 pandemonium-1.0.0/pandemonium/inst/doc/datainput.R | 13 pandemonium-1.0.0/pandemonium/inst/doc/datainput.Rmd | 28 pandemonium-1.0.0/pandemonium/inst/doc/datainput.html | 46 pandemonium-1.0.0/pandemonium/inst/doc/dim-reduction.R | 18 pandemonium-1.0.0/pandemonium/inst/doc/dim-reduction.Rmd | 18 pandemonium-1.0.0/pandemonium/inst/doc/dim-reduction.html | 18 pandemonium-1.0.0/pandemonium/inst/doc/get-coords.R | 10 pandemonium-1.0.0/pandemonium/inst/doc/get-coords.Rmd | 10 pandemonium-1.0.0/pandemonium/inst/doc/get-coords.html | 33 pandemonium-1.0.0/pandemonium/inst/doc/get-scores.R | 49 pandemonium-1.0.0/pandemonium/inst/doc/get-scores.Rmd | 59 pandemonium-1.0.0/pandemonium/inst/doc/get-scores.html | 69 pandemonium-1.0.0/pandemonium/inst/doc/make-plots.R | 11 pandemonium-1.0.0/pandemonium/inst/doc/make-plots.Rmd | 27 pandemonium-1.0.0/pandemonium/inst/doc/make-plots.html | 138 pandemonium-1.0.0/pandemonium/inst/doc/output.Rmd | 2 pandemonium-1.0.0/pandemonium/inst/doc/output.html | 2 pandemonium-1.0.0/pandemonium/man/chi2Bins.Rd |only pandemonium-1.0.0/pandemonium/man/chi2Score.Rd |only pandemonium-1.0.0/pandemonium/man/computeChi2.Rd | 2 pandemonium-1.0.0/pandemonium/man/getBenchmarkInformation.Rd | 2 pandemonium-1.0.0/pandemonium/man/getClusterDists.Rd | 2 pandemonium-1.0.0/pandemonium/man/getDists.Rd | 4 pandemonium-1.0.0/pandemonium/man/makePlots.Rd | 55 pandemonium-1.0.0/pandemonium/man/makeResults.Rd |only pandemonium-1.0.0/pandemonium/man/normCoords.Rd | 1 pandemonium-1.0.0/pandemonium/man/outsideScore.Rd |only pandemonium-1.0.0/pandemonium/man/pandemonium.Rd | 14 pandemonium-1.0.0/pandemonium/man/plotChi2.Rd | 2 pandemonium-1.0.0/pandemonium/man/plotDimRed.Rd | 5 pandemonium-1.0.0/pandemonium/man/plotObs.Rd | 2 pandemonium-1.0.0/pandemonium/man/plotSigBin.Rd | 2 pandemonium-1.0.0/pandemonium/man/plotWC.Rd | 2 pandemonium-1.0.0/pandemonium/man/pullCoords.Rd | 7 pandemonium-1.0.0/pandemonium/man/pullCoordsNoCov.Rd | 7 pandemonium-1.0.0/pandemonium/man/rawCoords.Rd | 1 pandemonium-1.0.0/pandemonium/man/tSNE.Rd | 3 pandemonium-1.0.0/pandemonium/man/tourMaker.Rd | 5 pandemonium-1.0.0/pandemonium/man/umap.Rd | 3 pandemonium-1.0.0/pandemonium/man/userCoords.Rd | 9 pandemonium-1.0.0/pandemonium/man/writeResults.Rd | 29 pandemonium-1.0.0/pandemonium/tests/testthat/test-plotting.R | 43 pandemonium-1.0.0/pandemonium/vignettes/Images/benchmark_tab_bike.png |binary pandemonium-1.0.0/pandemonium/vignettes/Images/comparison_tab_bike.png |binary pandemonium-1.0.0/pandemonium/vignettes/Images/coordinates_tab_bike.png |binary pandemonium-1.0.0/pandemonium/vignettes/Images/dimred_tab_bike.png |binary pandemonium-1.0.0/pandemonium/vignettes/Images/distancebreak_tab_bike.png |binary pandemonium-1.0.0/pandemonium/vignettes/Images/input_tab_bike.png |binary pandemonium-1.0.0/pandemonium/vignettes/Images/statistics_tab_bike.png |binary pandemonium-1.0.0/pandemonium/vignettes/Images/tour_tab_bike.png |binary pandemonium-1.0.0/pandemonium/vignettes/analysis-pages.Rmd | 63 pandemonium-1.0.0/pandemonium/vignettes/datainput.Rmd | 28 pandemonium-1.0.0/pandemonium/vignettes/dim-reduction.Rmd | 18 pandemonium-1.0.0/pandemonium/vignettes/get-coords.Rmd | 10 pandemonium-1.0.0/pandemonium/vignettes/get-scores.Rmd | 59 pandemonium-1.0.0/pandemonium/vignettes/make-plots.Rmd | 27 pandemonium-1.0.0/pandemonium/vignettes/output.Rmd | 2 77 files changed, 2641 insertions(+), 1748 deletions(-)
Title: Synthesise and Correlate Likert Scale and Rating-Scale Data
Based on Summary Statistics
Description: Generate and correlate synthetic Likert and rating-scale
questionnaire responses with predefined means, standard deviations,
Cronbach's Alpha, Factor Loading table, coefficients, and other summary
statistics.
It can be used to simulate Likert data, construct multi-item scales,
generate correlation matrices, and create example survey datasets for
teaching statistics, psychometrics, and methodological research.
Worked examples and documentation are available in the package
articles, accessible via the package website,
<https://winzarh.github.io/LikertMakeR/>.
Author: Hume Winzar [cre, aut]
Maintainer: Hume Winzar <winzar@gmail.com>
Diff between LikertMakeR versions 2.0.0 dated 2026-03-23 and 2.3.0 dated 2026-05-21
DESCRIPTION | 21 MD5 | 35 NAMESPACE | 17 NEWS.md | 21 R/RcppExports.R | 4 R/makeItemsScale.R | 445 +++++---- README.md | 2 build/vignette.rds |binary inst/doc/LikertMakeR_vignette.R | 65 - inst/doc/LikertMakeR_vignette.Rmd | 74 - inst/doc/LikertMakeR_vignette.html | 1559 +++++++++++++++++------------------ inst/doc/reliability_measures.html | 28 inst/extdata |only man/makeItemsScale.Rd | 114 -- src/RcppExports.cpp | 15 src/score_items.cpp |only tests/testthat/test-makeItemsScale.R | 13 vignettes/LikertMakeR_vignette.Rmd | 74 - vignettes/references_2.bib | 36 19 files changed, 1248 insertions(+), 1275 deletions(-)
Title: Breeding-Related Mixed-Effects Models
Description: Fit relationship-based and customized mixed-effects models with complex variance-covariance structures using the 'lme4' machinery. The core computational algorithms are implemented using the
'Eigen' 'C++' library for numerical linear algebra and 'RcppEigen' 'glue'.
Author: Giovanny Covarrubias-Pazaran [aut, cre]
Maintainer: Giovanny Covarrubias-Pazaran <cova_ruber@live.com.mx>
Diff between lme4breeding versions 1.1.1 dated 2026-02-15 and 1.1.2 dated 2026-05-20
DESCRIPTION | 10 +++++----- MD5 | 18 +++++++++--------- R/lmeb.R | 15 ++++++++------- R/utils.R | 3 ++- inst/doc/lmebreed.gxe.Rmd | 2 +- inst/doc/lmebreed.gxe.html | 13 ++++++++----- inst/doc/lmebreed.qg.html | 32 ++++++++++++++++---------------- inst/doc/lmebreed.summaries.html | 4 ++-- man/lmeb.Rd | 16 +++++++++++++--- vignettes/lmebreed.gxe.Rmd | 2 +- 10 files changed, 65 insertions(+), 50 deletions(-)
Title: Byte Pair Encoding Text Tokenization
Description: Unsupervised text tokenizer focused on computational efficiency. Wraps the 'YouTokenToMe' library <https://github.com/VKCOM/YouTokenToMe> which is an implementation of fast Byte Pair Encoding (BPE) <https://aclanthology.org/P16-1162/>.
Author: Jan Wijffels [aut, cre, cph] ,
BNOSAC [cph] ,
VK.com [cph],
Gregory Popovitch [ctb, cph] ,
The Abseil Authors [ctb, cph] ,
Ivan Belonogov [ctb, cph] )
Maintainer: Jan Wijffels <jwijffels@bnosac.be>
Diff between tokenizers.bpe versions 0.1.4 dated 2025-09-05 and 0.1.5 dated 2026-05-20
DESCRIPTION | 6 MD5 | 6 NEWS.md | 7 src/parallel_hashmap/phmap_base.h | 284 +++++++++++++++++++------------------- 4 files changed, 155 insertions(+), 148 deletions(-)
More information about tokenizers.bpe at CRAN
Permanent link
Title: Statistical Tools Designed for End Users
Description: The statistical tools in this package do one of four things:
1) Enhance basic statistical functions with more
flexible inputs, smarter defaults, and richer, clearer, and ready-to-use
output (e.g., t.test2())
2) Produce publication-ready commonly needed figures with one line of code (e.g., plot_cdf())
3) Implement novel analytical tools developed by the authors (e.g., twolines())
4) Deliver niche functions of high value to the authors that are not easily
available elsewhere (e.g., clear(), convert_to_sql(), resize_images()).
Author: Uri Simonsohn [aut, cre]
Maintainer: Uri Simonsohn <urisohn@gmail.com>
Diff between statuser versions 0.2.1 dated 2026-04-25 and 0.3.0 dated 2026-05-20
DESCRIPTION | 19 MD5 | 89 NAMESPACE | 13 NEWS.md | 16 R/clear_stimulus_cache.R |only R/desc_var.R | 14 R/interprobe.R | 800 ++++---- R/interprobe_helpers.R | 2128 +++++++++++----------- R/lm2.R | 2874 +++++++++++++++--------------- R/plot_freq.R | 15 R/plot_gam.R | 2 R/plot_means.R | 25 R/print_t.test2.R | 23 R/statuser-package.R | 9 R/stimulus.beeswarm.R |only R/stimulus.plot.R |only R/stimulus_auxiliary.R |only R/t.test2.R | 67 R/text2.R | 4 R/twolines.R | 16 R/validate.R | 241 ++ R/zzz.R | 6 README.md | 7 build/partial.rdb |binary man/clear_stimulus_cache.Rd |only man/interprobe.Rd | 2 man/lm2.Rd | 11 man/lm2_notes.Rd |only man/plot_freq.Rd | 7 man/plot_gam.Rd | 2 man/print.lm2.Rd | 5 man/statuser-package.Rd | 9 man/stimulus.beeswarm.Rd |only man/stimulus.plot.Rd |only man/t.test2.Rd | 2 man/text2.Rd | 4 tests/UNIT_TESTS.md | 15 tests/testthat/Rplots.pdf |binary tests/testthat/_snaps/lm2.md | 40 tests/testthat/_snaps/t.test2.md | 16 tests/testthat/data |only tests/testthat/test-backend_equivalence.R | 2 tests/testthat/test-desc_var.R | 632 +++--- tests/testthat/test-gam_functions.R | 20 tests/testthat/test-interprobe.R | 774 ++++---- tests/testthat/test-lm2.R | 1904 ++++++++++--------- tests/testthat/test-plot_means.R | 12 tests/testthat/test-stimulus.plot.R |only tests/testthat/test-t.test2.R | 30 49 files changed, 5211 insertions(+), 4644 deletions(-)
Title: Gaussian and Student-t Copula Models for Count Time Series
Description: Provides likelihood-based inference for Gaussian and Student-t
copula models for univariate count time series. Supports Poisson,
negative binomial, binomial, beta-binomial, and zero-inflated
marginals with ARMA dependence structures. Includes simulation,
maximum-likelihood estimation, residual diagnostics, and predictive
inference. Implements Time Series Minimax Exponential Tilting (TMET)
<doi:10.1016/j.csda.2026.108344>, an adaptation of minimax exponential
tilting of Botev (2017) <doi:10.1111/rssb.12162>. Also provides a
linear-cost implementation of the Geweke–Hajivassiliou–Keane (GHK)
simulator following Masarotto and Varin (2012) <doi:10.1214/12-EJS721>,
and the Continuous Extension (CE) approximation of Nguyen and
De Oliveira (2025) <doi:10.1080/02664763.2025.2498502>. The package
follows the S3 design philosophy of 'gcmr' but is developed independently.
Author: Quynh Nguyen [aut, cre],
Victor De Oliveira [aut]
Maintainer: Quynh Nguyen <nqnhu2209@gmail.com>
Diff between gctsc versions 0.2.3 dated 2026-03-20 and 0.2.4 dated 2026-05-20
gctsc-0.2.3/gctsc/R/loglik_factory.R |only gctsc-0.2.3/gctsc/R/marg_utils.R |only gctsc-0.2.3/gctsc/R/sample_utils.R |only gctsc-0.2.3/gctsc/R/validate-utils.R |only gctsc-0.2.3/gctsc/inst/Gaussian_copula_examples |only gctsc-0.2.3/gctsc/inst/t_copula_examples |only gctsc-0.2.3/gctsc/man/pmv_ce.Rd |only gctsc-0.2.3/gctsc/man/pmv_ghk.Rd |only gctsc-0.2.3/gctsc/man/pmv_tmet.Rd |only gctsc-0.2.4/gctsc/DESCRIPTION | 8 gctsc-0.2.4/gctsc/MD5 | 110 +- gctsc-0.2.4/gctsc/NAMESPACE | 18 gctsc-0.2.4/gctsc/R/arma-helpers.R | 2 gctsc-0.2.4/gctsc/R/cond_mv.R | 160 ++-- gctsc-0.2.4/gctsc/R/gctsc-examples.R |only gctsc-0.2.4/gctsc/R/gctsc-package.R |only gctsc-0.2.4/gctsc/R/loglik_ce.R | 172 ---- gctsc-0.2.4/gctsc/R/loglik_ghk.R | 221 +---- gctsc-0.2.4/gctsc/R/loglik_tmet.R | 227 +----- gctsc-0.2.4/gctsc/R/main.R | 829 +++++++++++++++------- gctsc-0.2.4/gctsc/R/marginals.R | 784 ++++++++++++++------ gctsc-0.2.4/gctsc/R/methods-print.R | 39 - gctsc-0.2.4/gctsc/R/pmvn.R |only gctsc-0.2.4/gctsc/R/pmvt.R |only gctsc-0.2.4/gctsc/R/prediction.R | 652 ++++++++--------- gctsc-0.2.4/gctsc/R/residuals.R | 253 +++--- gctsc-0.2.4/gctsc/R/sim-utils.R | 326 +++----- gctsc-0.2.4/gctsc/R/simulate-gctsc.R | 234 ++++++ gctsc-0.2.4/gctsc/R/tmet_t_solver.R | 2 gctsc-0.2.4/gctsc/README.md | 68 - gctsc-0.2.4/gctsc/build/partial.rdb |only gctsc-0.2.4/gctsc/inst/doc/gctsc_vignette.R | 30 gctsc-0.2.4/gctsc/inst/doc/gctsc_vignette.Rmd | 32 gctsc-0.2.4/gctsc/inst/doc/gctsc_vignette.html | 232 +++--- gctsc-0.2.4/gctsc/inst/examples |only gctsc-0.2.4/gctsc/man/gctsc-examples.Rd |only gctsc-0.2.4/gctsc/man/gctsc-package.Rd |only gctsc-0.2.4/gctsc/man/gctsc.Rd | 237 +++--- gctsc-0.2.4/gctsc/man/gctsc.opts.Rd | 33 gctsc-0.2.4/gctsc/man/marginal.gctsc.Rd | 103 +- gctsc-0.2.4/gctsc/man/plot.gctsc.Rd | 5 gctsc-0.2.4/gctsc/man/pmvn.Rd |only gctsc-0.2.4/gctsc/man/pmvt.Rd |only gctsc-0.2.4/gctsc/man/predict.gctsc.Rd | 130 ++- gctsc-0.2.4/gctsc/man/residuals.gctsc.Rd | 50 - gctsc-0.2.4/gctsc/man/sim_gctsc.Rd | 408 +++++----- gctsc-0.2.4/gctsc/src/RcppExports.cpp | 10 gctsc-0.2.4/gctsc/src/kernel_mvn.cpp | 248 +++--- gctsc-0.2.4/gctsc/src/kernel_mvt.cpp | 151 ++-- gctsc-0.2.4/gctsc/src/loglik_ce.cpp | 7 gctsc-0.2.4/gctsc/tests/testthat/test-marginals.R | 4 gctsc-0.2.4/gctsc/vignettes/gctsc_vignette.Rmd | 32 52 files changed, 3252 insertions(+), 2565 deletions(-)
Title: Extracts the Backbone from Networks
Description: An implementation of methods for extracting a sparse unweighted network (i.e. a backbone)
from an unweighted network (e.g., Hamann et al., 2016 <doi:10.1007/s13278-016-0332-2>), a weighted network
(e.g., Serrano et al., 2009 <doi:10.1073/pnas.0808904106>), or a weighted projection (e.g., Neal et al., 2021
<doi:10.1038/s41598-021-03238-3>).
Author: Zachary Neal [aut, cre] ,
Rachel Domagalski [ctb],
Bruce Sagan [ctb],
Karl Godard [ctb]
Maintainer: Zachary Neal <zpneal@msu.edu>
Diff between backbone versions 3.0.3 dated 2025-12-08 and 3.0.4 dated 2026-05-20
DESCRIPTION | 9 +- MD5 | 46 +++++++------- NEWS.md | 9 ++ R/backbone.R | 2 R/backbone_from_projection.R | 49 ++++++++++++++- R/backbone_from_unweighted.R | 42 ++++++++++++- R/backbone_from_weighted.R | 43 ++++++++++++- R/functions_projection.R | 12 +-- R/functions_util.R | 127 ---------------------------------------- R/functions_weighted.R | 8 +- README.md | 6 - build/vignette.rds |binary inst/CITATION | 12 +-- inst/doc/backbone.Rmd | 6 - inst/doc/backbone.html | 83 ++++++++++++-------------- inst/doc/senate.Rmd | 6 - inst/doc/senate.html | 72 +++++++++++----------- man/backbone.Rd | 2 man/backbone_from_projection.Rd | 2 man/backbone_from_unweighted.Rd | 2 man/backbone_from_weighted.Rd | 2 vignettes/backbone.Rmd | 6 - vignettes/backbone_bib.bib | 8 +- vignettes/senate.Rmd | 6 - 24 files changed, 275 insertions(+), 285 deletions(-)
Title: Linear and Nonlinear Methods for Analyzing Daily and Monthly
Dendroclimatological Data
Description: Provides novel dendroclimatological methods, primarily used by the
Tree-ring research community. There are four core functions. The first one is
daily_response(), which finds the optimal sequence of days that are related
to one or more tree-ring proxy records. Similar function is daily_response_seascorr(),
which implements partial correlations in the analysis of daily response functions.
For the enthusiast of monthly data, there is monthly_response() function.
The last core function is compare_methods(), which effectively compares several
linear and nonlinear regression algorithms on the task of climate reconstruction.
Author: Jernej Jevsenak [aut, cre]
Maintainer: Jernej Jevsenak <jernej.jevsenak@gmail.com>
Diff between dendroTools versions 1.2.15 dated 2025-07-18 and 1.2.16 dated 2026-05-20
DESCRIPTION | 6 MD5 | 40 NEWS.md | 17 R/daily_response.R | 3067 +++++++++++---------- R/daily_response_seascorr.R | 2226 +++++++-------- R/generics.R | 612 ++-- R/monthly_response.R | 2890 ++++++++++--------- R/monthly_response_seascorr.R | 2135 +++++++------- R/plot_extreme.R | 991 +++--- R/plot_heatmap.R | 488 +-- build/vignette.rds |binary inst/doc/Compare_different_regression_methods.html | 185 - inst/doc/Examples_with_daily_climate_data.html | 60 inst/doc/Modify_plots_with_ggplot.R |only inst/doc/Modify_plots_with_ggplot.Rmd |only inst/doc/Modify_plots_with_ggplot.html |only man/daily_response.Rd | 82 man/daily_response_seascorr.Rd | 77 man/monthly_response.Rd | 70 man/monthly_response_seascorr.Rd | 65 man/plot_extreme.Rd | 60 man/plot_heatmap.Rd | 64 vignettes/Modify_plots_with_ggplot.Rmd |only 23 files changed, 6897 insertions(+), 6238 deletions(-)
Title: Orchestration of Data Pipelines
Description: Framework for creating and orchestrating data pipelines. Organize, orchestrate, and monitor multiple pipelines in a single project. Use tags to decorate functions with scheduling parameters and configuration.
Author: Will Hipson [cre, aut, cph] ,
Ryan Garnett [aut, ctb, cph]
Maintainer: Will Hipson <will.e.hipson@gmail.com>
Diff between maestro versions 1.1.0 dated 2026-04-20 and 1.1.1 dated 2026-05-20
DESCRIPTION | 8 MD5 | 32 - NEWS.md | 8 R/MaestroPipeline.R | 39 + R/get_run_sequence.R | 4 build/vignette.rds |binary inst/doc/maestro-1-quick-start.html | 4 inst/doc/maestro-3-advanced-scheduling.html | 8 inst/doc/maestro-4-directed-acyclic-graphs.html | 22 inst/doc/maestro-5-logging.html | 66 +- inst/doc/maestro-8-conditionals.html | 38 - man/MaestroPipeline.Rd | 656 ++++++++++++------------ man/MaestroPipelineList.Rd | 655 ++++++++++++----------- man/MaestroSchedule.Rd | 321 ++++++----- man/get_run_sequence.Rd | 4 man/maestro.Rd | 1 tests/testthat/test-run_schedule.R | 110 ++++ 17 files changed, 1093 insertions(+), 883 deletions(-)
Title: Methods for ''A Fast Alternative for the R x C Ecological
Inference Case''
Description: Estimates the probability matrix for the R×C Ecological Inference problem using the Expectation-Maximization Algorithm with four approximation methods for the E-Step, and an exact method as well. It also provides a bootstrap function to estimate the standard deviation of the estimated probabilities. In addition, it has functions that aggregate rows optimally to have more reliable estimates in cases of having few data points. For comparing the probability estimates of two groups, a Wald test routine is implemented. The library has data from the first round of the Chilean Presidential Election 2021 and can also generate synthetic election data. Methods described in Thraves, Charles; Ubilla, Pablo; Hermosilla, Daniel (2024) ''A Fast Ecological Inference Algorithm for the R×C case'' <doi:10.2139/ssrn.4832834>.
Author: Charles Thraves [aut] ,
Pablo Ubilla [aut] ,
Daniel Hermosilla [aut, cre]
Maintainer: Daniel Hermosilla <daniel.hermosilla.r@ug.uchile.cl>
Diff between fastei versions 0.0.16 dated 2026-05-08 and 0.0.19 dated 2026-05-20
DESCRIPTION | 6 +-- MD5 | 8 ++-- inst/doc/demonstration.html | 4 +- src/main_symmetric.c | 85 +++++++++++++++++++++++++++++--------------- src/wrapper.cpp | 6 +-- 5 files changed, 69 insertions(+), 40 deletions(-)
Title: F1 Pit Stop Datasets
Description: Formula 1 pit stop data. The package provides information on teams and drivers across seasons (2019 or higher). It also includes a function to visualize pit stop performance.
Author: Jose Jordan-Soria [aut, cre]
Maintainer: Jose Jordan-Soria <jjose.jjordan@gmail.com>
Diff between f1pits versions 1.3.0 dated 2026-05-11 and 1.3.1 dated 2026-05-20
DESCRIPTION | 6 MD5 | 25 +-- NEWS.md | 12 + R/pitchamp.R | 2 R/pitelo.R | 174 +++++++++++++++++++----- R/pitplot.R | 6 R/pits.R | 15 ++ build/partial.rdb |only inst/doc/f1pits-intro.R | 27 ++- inst/doc/f1pits-intro.Rmd | 37 +++-- inst/doc/f1pits-intro.html | 319 ++++++++++++++++++++++----------------------- man/pitchamp.Rd | 2 man/pitelo.Rd | 59 +++++++- vignettes/f1pits-intro.Rmd | 37 +++-- 14 files changed, 461 insertions(+), 260 deletions(-)
Title: Phylogenetic Tree Statistics
Description: Collection of phylogenetic tree statistics,
collected throughout the literature. All functions have been
written to maximize computation speed. The package includes
umbrella functions to calculate all statistics, all balance
associated statistics, or all branching time related statistics.
Furthermore, the 'treestats' package supports summary statistic
calculations on Ltables, provides speed-improved coding of
branching times, Ltable conversion and includes algorithms to
create intermediately balanced trees. Full description can be
found in Janzen (2024) <doi:10.1016/j.ympev.2024.108168>.
Author: Thijs Janzen [cre, aut]
Maintainer: Thijs Janzen <thijsjanzen@gmail.com>
Diff between treestats versions 1.70.8 dated 2025-11-12 and 1.70.11 dated 2026-05-20
treestats-1.70.11/treestats/DESCRIPTION | 13 - treestats-1.70.11/treestats/MD5 | 104 +++++----- treestats-1.70.11/treestats/NEWS.md | 50 +++-- treestats-1.70.11/treestats/R/RcppExports.R | 20 ++ treestats-1.70.11/treestats/R/average_leaf_depth.R | 3 treestats-1.70.11/treestats/R/calc_all_stats.R | 38 ++- treestats-1.70.11/treestats/R/calc_brts_stats.R | 1 treestats-1.70.11/treestats/R/crown_age.R | 2 treestats-1.70.11/treestats/R/eigen_centrality.R | 52 ++--- treestats-1.70.11/treestats/R/gamma.R | 6 treestats-1.70.11/treestats/R/list_statistics.R | 1 treestats-1.70.11/treestats/R/max_closeness.R | 5 treestats-1.70.11/treestats/R/mean_branch_length.R | 28 +- treestats-1.70.11/treestats/R/minmax_adj.R | 118 ++++++++--- treestats-1.70.11/treestats/R/minmax_laplace.R | 120 ++++++++---- treestats-1.70.11/treestats/R/rebase_ltable.R | 5 treestats-1.70.11/treestats/R/rpanda.R | 1 treestats-1.70.11/treestats/R/treeness.R | 5 treestats-1.70.11/treestats/README.md | 2 treestats-1.70.11/treestats/build/vignette.rds |binary treestats-1.70.11/treestats/inst/doc/Correlations.R |only treestats-1.70.11/treestats/inst/doc/Correlations.Rmd |only treestats-1.70.11/treestats/inst/doc/Correlations.html |only treestats-1.70.11/treestats/inst/doc/Getting_started.R | 1 treestats-1.70.11/treestats/inst/doc/Getting_started.Rmd | 1 treestats-1.70.11/treestats/inst/doc/Getting_started.html | 28 +- treestats-1.70.11/treestats/inst/doc/Speed_improvement.html | 10 - treestats-1.70.11/treestats/inst/doc/Tree_size.R |only treestats-1.70.11/treestats/inst/doc/Tree_size.Rmd |only treestats-1.70.11/treestats/inst/doc/Tree_size.html |only treestats-1.70.11/treestats/inst/include/branch_colless.h |only treestats-1.70.11/treestats/inst/include/mpd.h | 110 +++++++++++ treestats-1.70.11/treestats/man/average_leaf_depth.Rd | 6 treestats-1.70.11/treestats/man/calc_all_stats.Rd | 5 treestats-1.70.11/treestats/man/eigen_centrality.Rd | 2 treestats-1.70.11/treestats/man/mean_branch_length.Rd | 2 treestats-1.70.11/treestats/man/mean_branch_length_ext.Rd | 3 treestats-1.70.11/treestats/man/mean_branch_length_int.Rd | 3 treestats-1.70.11/treestats/man/minmax_adj.Rd | 9 treestats-1.70.11/treestats/man/minmax_laplace.Rd | 10 - treestats-1.70.11/treestats/man/rebase_ltable.Rd | 7 treestats-1.70.11/treestats/man/var_branch_length.Rd | 3 treestats-1.70.11/treestats/man/var_branch_length_ext.Rd | 3 treestats-1.70.11/treestats/man/var_branch_length_int.Rd | 7 treestats-1.70.11/treestats/src/RcppExports.cpp | 69 ++++++ treestats-1.70.11/treestats/src/beta.cpp | 4 treestats-1.70.11/treestats/src/brts.cpp | 2 treestats-1.70.11/treestats/src/ladder.cpp | 4 treestats-1.70.11/treestats/src/laplacian.cpp | 27 ++ treestats-1.70.11/treestats/src/mpd.cpp | 20 +- treestats-1.70.11/treestats/src/phylo.cpp | 11 + treestats-1.70.11/treestats/src/rspectra_helpers.cpp |only treestats-1.70.11/treestats/tests/testthat/test-allstats.R | 6 treestats-1.70.11/treestats/vignettes/Correlations.Rmd |only treestats-1.70.11/treestats/vignettes/Getting_started.Rmd | 1 treestats-1.70.11/treestats/vignettes/Tree_size.Rmd |only treestats-1.70.8/treestats/inst/doc/Example_data.R |only treestats-1.70.8/treestats/inst/doc/Example_data.Rmd |only treestats-1.70.8/treestats/inst/doc/Example_data.html |only treestats-1.70.8/treestats/vignettes/Example_data.Rmd |only 60 files changed, 665 insertions(+), 263 deletions(-)
Title: Staggered Difference-in-Differences with Nonlinear Outcomes
Description: Supports staggered difference-in-differences designs with
nonlinear outcomes for both panel and repeated cross-section data.
Implements estimators for staggered treatment adoption with binary,
count, and other nonlinear outcomes, extending Callaway and Sant'Anna
(2021) <doi:10.1016/j.jeconom.2020.12.001> to settings with nonlinear
outcome models such as logit, probit, and Poisson. For panel data,
units are followed over time and 'idname' identifies repeated
observations. For repeated cross-section data, observations are
independent within each time period; 'idname' is optional and may
identify survey records or households, but the estimator does not
require the same units to appear across periods. Repeated cross-section
estimation includes pooled quasi-maximum likelihood approaches motivated
by Wooldridge (2023) <doi:10.1093/ectj/utad016>, with optional weighting
and clustered inference. Methods also draw on Roth and Sant'Anna (2023)
<doi:10.3982/ECTA19402> and Sant'A [...truncated...]
Author: Subir Hait [aut, cre]
Maintainer: Subir Hait <haitsubi@msu.edu>
Diff between NonlinearDiD versions 0.1.0 dated 2026-05-05 and 0.2.0 dated 2026-05-20
NonlinearDiD-0.1.0/NonlinearDiD/build |only NonlinearDiD-0.1.0/NonlinearDiD/inst/doc |only NonlinearDiD-0.1.0/NonlinearDiD/man/att_from_score_cpp.Rd |only NonlinearDiD-0.1.0/NonlinearDiD/man/dr_score_logit_cpp.Rd |only NonlinearDiD-0.1.0/NonlinearDiD/man/multiplier_weights_cpp.Rd |only NonlinearDiD-0.1.0/NonlinearDiD/man/weighted_mean_cpp.Rd |only NonlinearDiD-0.1.0/NonlinearDiD/src |only NonlinearDiD-0.1.0/NonlinearDiD/tests/testthat/test-nonlineardid.R |only NonlinearDiD-0.1.0/NonlinearDiD/vignettes |only NonlinearDiD-0.2.0/NonlinearDiD/DESCRIPTION | 46 NonlinearDiD-0.2.0/NonlinearDiD/MD5 | 70 - NonlinearDiD-0.2.0/NonlinearDiD/NAMESPACE | 3 NonlinearDiD-0.2.0/NonlinearDiD/NEWS.md | 93 - NonlinearDiD-0.2.0/NonlinearDiD/R/NonlinearDiD-package.R | 89 + NonlinearDiD-0.2.0/NonlinearDiD/R/RcppExports.R | 43 NonlinearDiD-0.2.0/NonlinearDiD/R/attgt.R | 660 +++++----- NonlinearDiD-0.2.0/NonlinearDiD/R/bounds.R | 362 ++--- NonlinearDiD-0.2.0/NonlinearDiD/R/estimators.R | 648 ++++----- NonlinearDiD-0.2.0/NonlinearDiD/R/inference.R | 282 +++- NonlinearDiD-0.2.0/NonlinearDiD/R/methods.R | 637 ++++----- NonlinearDiD-0.2.0/NonlinearDiD/R/pretest.R | 434 +++--- NonlinearDiD-0.2.0/NonlinearDiD/R/simulate.R | 238 ++- NonlinearDiD-0.2.0/NonlinearDiD/README.md | 152 +- NonlinearDiD-0.2.0/NonlinearDiD/inst/cleanup_stale_rd.R | 38 NonlinearDiD-0.2.0/NonlinearDiD/man/NonlinearDiD-package.Rd | 87 + NonlinearDiD-0.2.0/NonlinearDiD/man/dot-bootstrap_inference.Rd | 9 NonlinearDiD-0.2.0/NonlinearDiD/man/nonlinear_aggte.Rd | 30 NonlinearDiD-0.2.0/NonlinearDiD/man/nonlinear_attgt.Rd | 151 +- NonlinearDiD-0.2.0/NonlinearDiD/man/nonlinear_bounds.Rd | 22 NonlinearDiD-0.2.0/NonlinearDiD/man/nonlinear_pretest.Rd | 45 NonlinearDiD-0.2.0/NonlinearDiD/man/nonlineardid_methods.Rd | 2 NonlinearDiD-0.2.0/NonlinearDiD/man/plot.nonlinear_aggte.Rd | 2 NonlinearDiD-0.2.0/NonlinearDiD/man/plot.nonlinear_attgt.Rd | 2 NonlinearDiD-0.2.0/NonlinearDiD/man/sim_binary_panel.Rd | 10 NonlinearDiD-0.2.0/NonlinearDiD/man/sim_binary_rcs.Rd |only NonlinearDiD-0.2.0/NonlinearDiD/tests/testthat.R | 11 NonlinearDiD-0.2.0/NonlinearDiD/tests/testthat/helper.R | 14 NonlinearDiD-0.2.0/NonlinearDiD/tests/testthat/test-attgt.R |only 38 files changed, 2325 insertions(+), 1855 deletions(-)
Title: Make 'PICRUSt2' Output Analysis and Visualization Easier
Description: Provides a convenient way to analyze and visualize 'PICRUSt2' output with pre-defined plots and functions. Allows for generating statistical plots about microbiome functional predictions and offers customization options. Features a one-click option for creating publication-level plots, saving time and effort in producing professional-grade figures. Streamlines the 'PICRUSt2' analysis and visualization process. For more details, see Yang et al. (2023) <doi:10.1093/bioinformatics/btad470>.
Author: Chen Yang [aut, cre],
Liangliang Zhang [aut]
Maintainer: Chen Yang <cafferychen7850@gmail.com>
Diff between ggpicrust2 versions 2.5.14 dated 2026-04-29 and 2.5.16 dated 2026-05-20
ggpicrust2-2.5.14/ggpicrust2/tests/testthat/Rplots.pdf |only ggpicrust2-2.5.16/ggpicrust2/DESCRIPTION | 6 ggpicrust2-2.5.16/ggpicrust2/MD5 | 50 - ggpicrust2-2.5.16/ggpicrust2/NAMESPACE | 1 ggpicrust2-2.5.16/ggpicrust2/NEWS.md | 21 ggpicrust2-2.5.16/ggpicrust2/R/compare_daa_results.R | 1 ggpicrust2-2.5.16/ggpicrust2/R/data_utils.R | 30 ggpicrust2-2.5.16/ggpicrust2/R/ggpicrust2.R | 8 ggpicrust2-2.5.16/ggpicrust2/R/ko2kegg_abundance.R | 4 ggpicrust2-2.5.16/ggpicrust2/R/pathway_annotation.R | 100 ++ ggpicrust2-2.5.16/ggpicrust2/R/pathway_daa.R | 2 ggpicrust2-2.5.16/ggpicrust2/R/taxa_contribution.R | 341 +++++++--- ggpicrust2-2.5.16/ggpicrust2/README.md | 32 ggpicrust2-2.5.16/ggpicrust2/inst/doc/using_ggpicrust2.R | 16 ggpicrust2-2.5.16/ggpicrust2/inst/doc/using_ggpicrust2.Rmd | 22 ggpicrust2-2.5.16/ggpicrust2/inst/doc/using_ggpicrust2.html | 88 +- ggpicrust2-2.5.16/ggpicrust2/man/aggregate_taxa_contributions.Rd | 8 ggpicrust2-2.5.16/ggpicrust2/man/pathway_annotation.Rd | 10 ggpicrust2-2.5.16/ggpicrust2/man/read_contrib_file.Rd | 30 ggpicrust2-2.5.16/ggpicrust2/man/read_pathway_contrib_file.Rd |only ggpicrust2-2.5.16/ggpicrust2/man/read_strat_file.Rd | 2 ggpicrust2-2.5.16/ggpicrust2/tests/testthat/test-data_utils.R | 39 + ggpicrust2-2.5.16/ggpicrust2/tests/testthat/test-first-principles-fixes.R | 17 ggpicrust2-2.5.16/ggpicrust2/tests/testthat/test-ko2kegg_abundance.R | 18 ggpicrust2-2.5.16/ggpicrust2/tests/testthat/test-pathway_annotation.R | 55 + ggpicrust2-2.5.16/ggpicrust2/tests/testthat/test-taxa_contribution.R | 167 ++++ ggpicrust2-2.5.16/ggpicrust2/vignettes/using_ggpicrust2.Rmd | 22 27 files changed, 895 insertions(+), 195 deletions(-)
Title: A Tool for Processing and Analyzing Dendrometer Data
Description: There are various functions for managing and cleaning data before the application of different approaches. This includes identifying and erasing sudden jumps in dendrometer data not related to environmental change, identifying the time gaps of recordings, and changing the temporal resolution of data to different frequencies. Furthermore, the package calculates daily statistics of dendrometer data, including the daily amplitude of tree growth. Various approaches can be applied to separate radial growth from daily cyclic shrinkage and expansion due to uptake and loss of stem water. In addition, it identifies periods of consecutive days with user-defined climatic conditions in daily meteorological data, then check what trees are doing during that period.
Author: Sugam Aryal [aut, cre, dtc],
Martin Haeusser [aut],
Jussi Griessinger [aut],
Ze-Xin Fan [aut],
Achim Braeuning [aut, dgs]
Maintainer: Sugam Aryal <sugam.aryal@fau.de>
Diff between dendRoAnalyst versions 0.1.5 dated 2024-03-19 and 0.1.6 dated 2026-05-20
dendRoAnalyst-0.1.5/dendRoAnalyst/R/i.jump.locator.R |only dendRoAnalyst-0.1.5/dendRoAnalyst/R/jump_locator.R |only dendRoAnalyst-0.1.5/dendRoAnalyst/man/dm.detrend.Rd |only dendRoAnalyst-0.1.5/dendRoAnalyst/man/plot_SC_output.Rd |only dendRoAnalyst-0.1.5/dendRoAnalyst/man/plot_ZG_output.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/DESCRIPTION | 18 dendRoAnalyst-0.1.6/dendRoAnalyst/MD5 | 252 + dendRoAnalyst-0.1.6/dendRoAnalyst/NAMESPACE | 155 dendRoAnalyst-0.1.6/dendRoAnalyst/R/clim.twd.R | 735 +++ dendRoAnalyst-0.1.6/dendRoAnalyst/R/climate_functions.R |only dendRoAnalyst-0.1.6/dendRoAnalyst/R/daily.data.R | 192 - dendRoAnalyst-0.1.6/dendRoAnalyst/R/dendro.resample.R | 365 + dendRoAnalyst-0.1.6/dendRoAnalyst/R/dendro.truncate.R | 257 + dendRoAnalyst-0.1.6/dendRoAnalyst/R/dm.detrend.R | 349 + dendRoAnalyst-0.1.6/dendRoAnalyst/R/dm.fit.gompertz.R | 48 dendRoAnalyst-0.1.6/dendRoAnalyst/R/dm.growth.evaluate.R |only dendRoAnalyst-0.1.6/dendRoAnalyst/R/dm.growth.fit.R |only dendRoAnalyst-0.1.6/dendRoAnalyst/R/dm.growth.fit.double.R |only dendRoAnalyst-0.1.6/dendRoAnalyst/R/dm.na.interpolation.R | 1303 ++++++- dendRoAnalyst-0.1.6/dendRoAnalyst/R/dm_add_climate.R |only dendRoAnalyst-0.1.6/dendRoAnalyst/R/dm_join_daily_clim.R |only dendRoAnalyst-0.1.6/dendRoAnalyst/R/dm_join_phase_clim.R |only dendRoAnalyst-0.1.6/dendRoAnalyst/R/dm_join_subdaily_clim.R |only dendRoAnalyst-0.1.6/dendRoAnalyst/R/dm_normalize.R |only dendRoAnalyst-0.1.6/dendRoAnalyst/R/dm_sea.R |only dendRoAnalyst-0.1.6/dendRoAnalyst/R/dm_smooth.R |only dendRoAnalyst-0.1.6/dendRoAnalyst/R/dm_wavelet.R |only dendRoAnalyst-0.1.6/dendRoAnalyst/R/dm_wavelet_coherence.R |only dendRoAnalyst-0.1.6/dendRoAnalyst/R/dm_wavelet_reconstruct.R |only dendRoAnalyst-0.1.6/dendRoAnalyst/R/events_phase_plots.R |only dendRoAnalyst-0.1.6/dendRoAnalyst/R/jump.locator.R |only dendRoAnalyst-0.1.6/dendRoAnalyst/R/ktm_clim_hourly.R |only dendRoAnalyst-0.1.6/dendRoAnalyst/R/mean.detrended.dm.R | 579 ++- 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dendRoAnalyst-0.1.6/dendRoAnalyst/R/zzz.R | 2 dendRoAnalyst-0.1.6/dendRoAnalyst/build/partial.rdb |binary dendRoAnalyst-0.1.6/dendRoAnalyst/build/vignette.rds |binary dendRoAnalyst-0.1.6/dendRoAnalyst/data/ktm_clim_hourly.rda |only dendRoAnalyst-0.1.6/dendRoAnalyst/inst/doc/NEWS.R | 3 dendRoAnalyst-0.1.6/dendRoAnalyst/inst/doc/NEWS.Rmd | 271 + dendRoAnalyst-0.1.6/dendRoAnalyst/inst/doc/NEWS.html | 440 ++ dendRoAnalyst-0.1.6/dendRoAnalyst/inst/doc/dendRoAnalyst_vignettes.R | 637 +++ dendRoAnalyst-0.1.6/dendRoAnalyst/inst/doc/dendRoAnalyst_vignettes.Rmd | 936 ++++- dendRoAnalyst-0.1.6/dendRoAnalyst/inst/doc/dendRoAnalyst_vignettes.html | 1345 ++++++- dendRoAnalyst-0.1.6/dendRoAnalyst/man/clim.twd.Rd | 149 dendRoAnalyst-0.1.6/dendRoAnalyst/man/clim.twd.stats.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/clim.twd.test.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/daily.data.Rd | 81 dendRoAnalyst-0.1.6/dendRoAnalyst/man/dendro.resample.Rd | 77 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dendRoAnalyst-0.1.6/dendRoAnalyst/man/plot.clim_twd_test.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/plot.daily_output.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/plot.daily_output_clim.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/plot.dm_detrended.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/plot.dm_epoch.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/plot.dm_growth_evaluation.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/plot.dm_growth_fit.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/plot.dm_na_interpolation.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/plot.dm_standardized.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/plot.dm_wavelet.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/plot.dm_wavelet_coherence.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/plot.dm_wavelet_reconstruct.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/plot.mean_dm_detrended.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/plot.mov_cor_dm.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/plot.network_interpolation.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/plot.summary_mov_cor_dm.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/plot_dm_assessment.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/plot_dm_gaps.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/plot_dm_interpolation.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/plot_event_climate_box.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/plot_event_climate_relation.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/plot_mov.cor.Rd | 26 dendRoAnalyst-0.1.6/dendRoAnalyst/man/print.dm_growth_fit.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/print.mov_cor_dm.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/print.summary.clim_twd_stats.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/print.summary.clim_twd_test.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/print.summary.dm_epoch.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/print.summary.dm_growth_fit.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/print.summary.dm_wavelet_reconstruct.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/print.summary_mov_cor_dm.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/read.climate.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/read.dendrometer.Rd | 89 dendRoAnalyst-0.1.6/dendRoAnalyst/man/reso_dm.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/smooth_dm.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/summary.clim_twd_stats.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/summary.clim_twd_test.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/summary.dm_epoch.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/summary.dm_growth_fit.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/summary.dm_wavelet.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/summary.dm_wavelet_reconstruct.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/summary.mov_cor_dm.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/vignettes/NEWS.Rmd | 271 + dendRoAnalyst-0.1.6/dendRoAnalyst/vignettes/dendRoAnalyst_vignettes.Rmd | 936 ++++- 208 files changed, 16203 insertions(+), 1782 deletions(-)
Title: Add Ipea Editorial Standards to 'ggplot2' Graphics
Description: Convenient functions to create 'ggplot2' graphics following the
editorial guidelines of the Institute for Applied Economic
Research (Ipea).
Author: Pedro Ferreira [aut, cre],
Pedro Jorge [aut],
Daniel Lima [aut],
Gustavo Coelho [aut],
Rafael H. M. Pereira [aut],
Lucas Mation [aut],
Fabio Vaz [ctb],
Ipea - Institue for Applied Economic Research [cph, fnd]
Maintainer: Pedro Ferreira <pedro.ferreira2@ipea.gov.br>
Diff between ipeaplot versions 0.5.1 dated 2026-02-06 and 0.5.2 dated 2026-05-20
DESCRIPTION | 6 +++--- MD5 | 20 ++++++++++---------- NEWS.md | 3 +++ inst/doc/cookbook.R | 1 - inst/doc/cookbook.Rmd | 1 - inst/doc/cookbook.html | 5 ++--- inst/doc/intro_ipeaplot.R | 4 ---- inst/doc/intro_ipeaplot.Rmd | 4 ---- inst/doc/intro_ipeaplot.html | 10 +++------- vignettes/cookbook.Rmd | 1 - vignettes/intro_ipeaplot.Rmd | 4 ---- 11 files changed, 21 insertions(+), 38 deletions(-)
Title: Create Maps of Air Pollution Data
Description: Combine the air quality data analysis methods of 'openair'
with the JavaScript 'Leaflet' (<https://leafletjs.com/>) library.
Functionality includes plotting site maps, "directional analysis"
figures such as polar plots, and air mass trajectories.
Author: Jack Davison [cre, aut] ,
David Carslaw [aut]
Maintainer: Jack Davison <jack.davison@wsp.com>
Diff between openairmaps versions 0.10.0 dated 2026-04-04 and 0.10.1 dated 2026-05-20
DESCRIPTION | 17 - MD5 | 58 +-- NEWS.md | 702 ++++++++++++++++++++++----------------------- R/polar_annulusMap.R | 7 R/polar_diffMap.R | 4 R/polar_freqMap.R | 7 R/polar_percentileMap.R | 7 R/polar_polarMap.R | 7 R/polar_pollroseMap.R | 7 R/polar_windroseMap.R | 10 R/traj_trajLevelMap.R | 184 ++++------- R/zDeprecated.R | 490 +------------------------------ man/addPolarMarkers.Rd | 4 man/addTrajPaths.Rd | 14 man/annulusMap.Rd | 54 ++- man/deprecated-traj.Rd | 356 ---------------------- man/diffMap.Rd | 69 +++- man/freqMap.Rd | 70 +++- man/interpolate-map.Rd | 6 man/networkMap.Rd | 4 man/openairmaps-package.Rd | 1 man/percentileMap.Rd | 41 +- man/polarMap.Rd | 63 ++-- man/polar_data.Rd | 2 man/pollroseMap.Rd | 20 - man/searchNetwork.Rd | 4 man/trajLevelMap.Rd | 13 man/trajMap.Rd | 8 man/traj_data.Rd | 2 man/windroseMap.Rd | 42 +- 30 files changed, 799 insertions(+), 1474 deletions(-)
Title: Download Official Spatial Data Sets of Brazil
Description: Easy access to official spatial data sets of Brazil. The package
offers a wide range of spatial data sets available at various
geographic scales and for various years with harmonized attributes,
projection and fixed topology. All functions allow for seamless
integration sf, DuckDB and Arrow.
Author: Rafael H. M. Pereira [aut, cre] ,
Rogerio Jeronimo Barbosa [aut],
Caio Nogueira Goncalves [ctb],
Cecilia do Lago [ctb],
Filipe Cavalcanti [ctb],
Arthur Bazolli [ctb],
Lucas Gelape [ctb],
Rafael Lopes [ctb],
Vinicius Oike [ctb],
Paulo Henrique Fernand [...truncated...]
Maintainer: Rafael H. M. Pereira <rafa.pereira.br@gmail.com>
Diff between geobr versions 1.9.1 dated 2024-09-06 and 2.0.0 dated 2026-05-20
geobr-1.9.1/geobr/man/download_gpkg.Rd |only geobr-1.9.1/geobr/man/download_metadata.Rd |only geobr-1.9.1/geobr/man/filter_state.Rd |only geobr-1.9.1/geobr/man/load_gpkg.Rd |only geobr-1.9.1/geobr/man/select_data_type.Rd |only geobr-1.9.1/geobr/tests/testthat/test-read_indigenous_land.R |only geobr-2.0.0/geobr/DESCRIPTION | 61 - geobr-2.0.0/geobr/MD5 | 254 ++-- geobr-2.0.0/geobr/NAMESPACE | 5 geobr-2.0.0/geobr/R/cep_to_state.R | 1 geobr-2.0.0/geobr/R/geobr.R | 15 geobr-2.0.0/geobr/R/list_geobr.R | 239 ++-- geobr-2.0.0/geobr/R/lookup_muni.R | 244 +--- geobr-2.0.0/geobr/R/onLoad.R |only geobr-2.0.0/geobr/R/read_amazon.R | 48 geobr-2.0.0/geobr/R/read_biomes.R | 49 geobr-2.0.0/geobr/R/read_capitals.R | 43 geobr-2.0.0/geobr/R/read_census_tract.R | 132 -- geobr-2.0.0/geobr/R/read_comparable_areas.R | 22 geobr-2.0.0/geobr/R/read_conservation_units.R | 50 geobr-2.0.0/geobr/R/read_country.R | 51 geobr-2.0.0/geobr/R/read_disaster_risk_area.R | 57 geobr-2.0.0/geobr/R/read_favelas.R |only geobr-2.0.0/geobr/R/read_health_facilities.R | 90 - geobr-2.0.0/geobr/R/read_health_region.R | 145 +- geobr-2.0.0/geobr/R/read_immediate_region.R | 75 - geobr-2.0.0/geobr/R/read_indigenous_land.R | 61 - geobr-2.0.0/geobr/R/read_intermediate_region.R | 76 - geobr-2.0.0/geobr/R/read_meso_region.R | 89 - geobr-2.0.0/geobr/R/read_metro_area.R | 65 - geobr-2.0.0/geobr/R/read_micro_region.R | 91 - geobr-2.0.0/geobr/R/read_municipal_seat.R | 59 - geobr-2.0.0/geobr/R/read_municipality.R | 101 - geobr-2.0.0/geobr/R/read_neighborhood.R | 64 - geobr-2.0.0/geobr/R/read_polling_places.R |only geobr-2.0.0/geobr/R/read_pop_arrangements.R | 57 geobr-2.0.0/geobr/R/read_quilombos.R |only geobr-2.0.0/geobr/R/read_region.R | 44 geobr-2.0.0/geobr/R/read_schools.R | 95 + geobr-2.0.0/geobr/R/read_semiarid.R | 54 geobr-2.0.0/geobr/R/read_state.R | 92 - geobr-2.0.0/geobr/R/read_statistical_grid.R | 144 -- geobr-2.0.0/geobr/R/read_urban_area.R | 67 - geobr-2.0.0/geobr/R/read_urban_concentrations.R | 59 - geobr-2.0.0/geobr/R/read_weighting_area.R | 116 -- geobr-2.0.0/geobr/R/remove_islands.R |only geobr-2.0.0/geobr/R/utils.R | 577 +++++----- geobr-2.0.0/geobr/build/partial.rdb |binary geobr-2.0.0/geobr/build/vignette.rds |binary geobr-2.0.0/geobr/inst/doc/intro_to_geobr.R | 280 ++-- geobr-2.0.0/geobr/inst/doc/intro_to_geobr.Rmd | 156 +- geobr-2.0.0/geobr/inst/doc/intro_to_geobr.html | 308 ++--- geobr-2.0.0/geobr/inst/extdata/br_offcoast.parquet |only geobr-2.0.0/geobr/inst/extdata/br_states_lifexpect2017.csv | 56 geobr-2.0.0/geobr/man/cep_to_state.Rd | 3 geobr-2.0.0/geobr/man/check_connection.Rd | 2 geobr-2.0.0/geobr/man/download_metadata2.Rd |only geobr-2.0.0/geobr/man/download_parquet.Rd |only geobr-2.0.0/geobr/man/figures/Thumbs.db |only geobr-2.0.0/geobr/man/filter_arrw.Rd |only geobr-2.0.0/geobr/man/geobr.Rd | 14 geobr-2.0.0/geobr/man/geobr_open_dataset.Rd |only geobr-2.0.0/geobr/man/list_geobr.Rd | 15 geobr-2.0.0/geobr/man/lookup_muni.Rd | 41 geobr-2.0.0/geobr/man/numbers_only.Rd | 36 geobr-2.0.0/geobr/man/read_amazon.Rd | 58 - geobr-2.0.0/geobr/man/read_biomes.Rd | 64 - geobr-2.0.0/geobr/man/read_capitals.Rd | 59 - geobr-2.0.0/geobr/man/read_census_tract.Rd | 53 geobr-2.0.0/geobr/man/read_comparable_areas.Rd | 40 geobr-2.0.0/geobr/man/read_conservation_units.Rd | 35 geobr-2.0.0/geobr/man/read_country.Rd | 62 - geobr-2.0.0/geobr/man/read_disaster_risk_area.Rd | 69 - geobr-2.0.0/geobr/man/read_favela.Rd |only geobr-2.0.0/geobr/man/read_health_facilities.Rd | 101 - geobr-2.0.0/geobr/man/read_health_region.Rd | 98 - geobr-2.0.0/geobr/man/read_immediate_region.Rd | 69 - geobr-2.0.0/geobr/man/read_indigenous_land.Rd | 70 - geobr-2.0.0/geobr/man/read_intermediate_region.Rd | 70 - geobr-2.0.0/geobr/man/read_meso_region.Rd | 63 - geobr-2.0.0/geobr/man/read_metro_area.Rd | 64 - geobr-2.0.0/geobr/man/read_micro_region.Rd | 67 - geobr-2.0.0/geobr/man/read_municipal_seat.Rd | 73 - geobr-2.0.0/geobr/man/read_municipality.Rd | 66 - geobr-2.0.0/geobr/man/read_neighborhood.Rd | 76 - geobr-2.0.0/geobr/man/read_polling_places.Rd |only geobr-2.0.0/geobr/man/read_pop_arrangements.Rd | 69 - geobr-2.0.0/geobr/man/read_quilombola_land.Rd |only geobr-2.0.0/geobr/man/read_region.Rd | 60 - geobr-2.0.0/geobr/man/read_schools.Rd | 100 + geobr-2.0.0/geobr/man/read_semiarid.Rd | 64 - geobr-2.0.0/geobr/man/read_state.Rd | 66 - geobr-2.0.0/geobr/man/read_statistical_grid.Rd | 83 - geobr-2.0.0/geobr/man/read_urban_area.Rd | 74 - geobr-2.0.0/geobr/man/read_urban_concentrations.Rd | 70 - geobr-2.0.0/geobr/man/read_weighting_area.Rd | 88 - geobr-2.0.0/geobr/man/remove_islands.Rd |only geobr-2.0.0/geobr/man/roxygen/templates/code_muni.R |only geobr-2.0.0/geobr/man/roxygen/templates/code_state.R |only geobr-2.0.0/geobr/man/roxygen/templates/date.R |only geobr-2.0.0/geobr/man/roxygen/templates/output.R |only geobr-2.0.0/geobr/man/roxygen/templates/verbose.R |only geobr-2.0.0/geobr/man/roxygen/templates/year.R |only geobr-2.0.0/geobr/man/select_geometry_type.Rd |only geobr-2.0.0/geobr/man/select_metadata.Rd | 7 geobr-2.0.0/geobr/man/select_year_input.Rd | 10 geobr-2.0.0/geobr/tests/tests_rafa/create_br_buffer_to_remove_islands.R |only geobr-2.0.0/geobr/tests/tests_rafa/test_rafa.R | 2 geobr-2.0.0/geobr/tests/testthat.R | 1 geobr-2.0.0/geobr/tests/testthat/test-download_metadata.R | 16 geobr-2.0.0/geobr/tests/testthat/test-list_geobr.R | 10 geobr-2.0.0/geobr/tests/testthat/test-lookup_muni.R | 22 geobr-2.0.0/geobr/tests/testthat/test-read_amazon.R | 4 geobr-2.0.0/geobr/tests/testthat/test-read_biomes.R | 10 geobr-2.0.0/geobr/tests/testthat/test-read_capitals.R | 5 geobr-2.0.0/geobr/tests/testthat/test-read_census_tract.R | 24 geobr-2.0.0/geobr/tests/testthat/test-read_comparable_areas.R | 25 geobr-2.0.0/geobr/tests/testthat/test-read_conservation_units.R | 3 geobr-2.0.0/geobr/tests/testthat/test-read_country.R | 13 geobr-2.0.0/geobr/tests/testthat/test-read_disaster_risk_area.R | 9 geobr-2.0.0/geobr/tests/testthat/test-read_favela.R |only geobr-2.0.0/geobr/tests/testthat/test-read_health_facilities.R | 17 geobr-2.0.0/geobr/tests/testthat/test-read_health_region.R | 22 geobr-2.0.0/geobr/tests/testthat/test-read_immediate_region.R | 12 geobr-2.0.0/geobr/tests/testthat/test-read_indigenous_lands.R |only geobr-2.0.0/geobr/tests/testthat/test-read_intermediate_region.R | 9 geobr-2.0.0/geobr/tests/testthat/test-read_meso_region.R | 10 geobr-2.0.0/geobr/tests/testthat/test-read_metro_area.R | 50 geobr-2.0.0/geobr/tests/testthat/test-read_micro_region.R | 10 geobr-2.0.0/geobr/tests/testthat/test-read_municipal_seat.R | 3 geobr-2.0.0/geobr/tests/testthat/test-read_municipality.R | 29 geobr-2.0.0/geobr/tests/testthat/test-read_neighborhood.R | 3 geobr-2.0.0/geobr/tests/testthat/test-read_polling_places.R |only geobr-2.0.0/geobr/tests/testthat/test-read_pop_arrangements.R | 5 geobr-2.0.0/geobr/tests/testthat/test-read_quilombola_lands.R |only geobr-2.0.0/geobr/tests/testthat/test-read_region.R | 10 geobr-2.0.0/geobr/tests/testthat/test-read_schools.R | 11 geobr-2.0.0/geobr/tests/testthat/test-read_semiarid.R | 20 geobr-2.0.0/geobr/tests/testthat/test-read_state.R | 15 geobr-2.0.0/geobr/tests/testthat/test-read_statistical_grid.R | 30 geobr-2.0.0/geobr/tests/testthat/test-read_urban_area.R | 37 geobr-2.0.0/geobr/tests/testthat/test-read_urban_concentrations.R | 6 geobr-2.0.0/geobr/tests/testthat/test-read_weighting_area.R | 6 geobr-2.0.0/geobr/tests/testthat/test-remove_islands.R |only geobr-2.0.0/geobr/vignettes/intro_to_geobr.Rmd | 156 +- 145 files changed, 3662 insertions(+), 3294 deletions(-)
Title: Set Proxy in R Console
Description: The use of proxies is required in certain network
environments. Despite the power of system level software, it is still
inconvenient to switch proxy networks at random in R's console. This
package is designed to provide one-click switching between proxy and
non-proxy states.
Author: Yonghe Xia [aut, ctb, cre]
Maintainer: Yonghe Xia <xiayh17@gmail.com>
Diff between r.proxy versions 0.1.3 dated 2023-08-15 and 0.1.4 dated 2026-05-20
DESCRIPTION | 8 ++-- MD5 | 16 ++++---- NAMESPACE | 15 +++---- R/check_ip.R | 102 ++++++++++++++++++++++++++++-------------------------- R/proxy.R | 4 +- man/check_ip.Rd | 8 ++-- man/init_proxy.Rd | 38 ++++++++++---------- man/noproxy.Rd | 38 ++++++++++---------- man/proxy.Rd | 38 ++++++++++---------- 9 files changed, 137 insertions(+), 130 deletions(-)
Title: Access the 'PREDICTS' Biodiversity Database
Description: Fetches the 'PREDICTS' database and relevant metadata from the Data
Portal at the Natural History Museum, London <https://data.nhm.ac.uk>. Data
were collated from over 400 existing spatial comparisons of local-scale
biodiversity exposed to different intensities and types of anthropogenic
pressures, from sites around the world. These data are described in Hudson
et al. (2013) <doi:10.1002/ece3.2579>.
Author: Connor Duffin [aut, cre],
The Trustees of The Natural History Museum, London [cph]
Maintainer: Connor Duffin <c.duffin@protonmail.com>
Diff between predictsr versions 0.2.0 dated 2025-11-28 and 0.2.1 dated 2026-05-20
DESCRIPTION | 11 +- MD5 | 26 ++--- NEWS.md | 8 + R/get-extras.R | 15 ++ R/load-predicts-data.R | 156 +++++++++++++++++++++--------- R/utils.R | 32 +++++- README.md | 1 build/partial.rdb |binary build/vignette.rds |binary man/predictsr-package.Rd | 3 tests/testthat/helper.R | 148 +++++++++++++++++++++------- tests/testthat/test-column-descriptions.R | 122 +++++++++++++++++++---- tests/testthat/test-load-predicts.R | 42 +++----- tests/testthat/test-utils.R | 19 +++ 14 files changed, 435 insertions(+), 148 deletions(-)
Title: Tools for the Analysis of Air Pollution Data
Description: Tools to analyse, interpret and understand air pollution
data. Data are typically regular time series and air quality
measurement, meteorological data and dispersion model output can be
analysed. The package is described in Carslaw and Ropkins (2012,
<doi:10.1016/j.envsoft.2011.09.008>) and subsequent papers.
Author: David Carslaw [aut, cre] ,
Jack Davison [aut] ,
Karl Ropkins [aut]
Maintainer: David Carslaw <david.carslaw@york.ac.uk>
Diff between openair versions 3.0.0 dated 2026-04-02 and 3.1.0 dated 2026-05-20
DESCRIPTION | 14 LICENSE | 4 MD5 | 338 +- NAMESPACE | 158 - NEWS.md | 134 + R/GaussianSmooth.R | 272 +- R/RColorBrewer.R | 3576 ++++++++++++++---------------- R/RcppExports.R | 132 - R/TaylorDiagram.R | 1338 +++++------ R/TheilSen.R | 1280 +++++----- R/WhittakerSmooth.R | 366 +-- R/aqStats.R | 736 +++--- R/bootMeans.R | 586 ++-- R/breakOpts.R |only R/calcPercentile.R | 262 +- R/calendarPlot.R | 1593 ++++++------- R/checkPrep.R | 332 +- R/colourOpts.R |only R/conditionalEval.R | 917 +++---- R/conditionalQuantile.R | 814 +++--- R/corPlot.R | 1333 +++++------ R/cutData.R | 1951 ++++++++-------- R/datePad.R | 318 +- R/facet_wd.R | 298 +- R/ggplot2-utils.R | 654 ++--- R/importADMS.R | 2464 ++++++++++---------- R/importEurope.R | 438 +-- R/importImperial.R | 880 +++---- R/importMeta.R | 746 +++--- R/importTraj.R | 360 +-- R/importUKAQ-utils.R | 1168 ++++----- R/importUKAQ.R | 1456 ++++++------ R/kzFilter.R |only R/layer_stroked_path.R | 390 +-- R/layer_windflow.R | 288 +- R/modStats.R | 800 +++--- R/mydata.R | 62 R/openColours.R | 1972 +++++++++++----- R/openair-package.R | 198 - R/openair.generics.R | 6 R/percentileRose.R | 1256 +++++----- R/polarAnnulus.R | 1437 ++++++------ R/polarCluster.R | 885 +++---- R/polarDiff.R | 377 +-- R/polarFreq.R | 919 +++---- R/polarPlot.R | 3302 ++++++++++++++------------- R/quickText.R | 490 ++-- R/refOpts.R |only R/rollingMean.R | 300 +- R/rollingQuantile.R | 298 +- R/runRegression.R | 338 +- R/scatterPlot.R | 3187 +++++++++++++------------- R/selectByDate.R | 370 +-- R/selectRunning.R | 320 +- R/senTheil.R | 286 -- R/shared-docs.R | 288 +- R/smoothTrend.R | 1380 ++++++----- R/splitByDate.R | 252 +- R/timeAverage.R | 1196 ++++------ R/timePlot.R | 1566 ++++++------- R/timeProp.R | 615 ++--- R/timeVariation.R | 794 +++--- R/trajCluster.R | 536 ++-- R/trajLevel.R | 2043 +++++++++-------- R/trajPlot.R | 72 R/trendLevel.R | 1244 +++++----- R/utilities.R | 775 ++++-- R/variationPlot.R | 1473 ++++++------ R/windRose.R | 2278 +++++++++---------- R/windflowOpts.R | 375 +-- README.md | 196 - build/partial.rdb |binary inst/CITATION | 42 inst/WORDLIST | 1006 ++++---- man/GaussianSmooth.Rd | 116 man/TaylorDiagram.Rd | 628 ++--- man/TheilSen.Rd | 583 ++-- man/WhittakerSmooth.Rd | 178 - man/aqStats.Rd | 228 - man/bootMeans.Rd | 178 - man/breakOpts.Rd |only man/calcPercentile.Rd | 257 +- man/calc_sqtba_cpp.Rd | 80 man/calendarPlot.Rd | 606 ++--- man/colourOpts.Rd |only man/conditionalEval.Rd | 342 +- man/conditionalQuantile.Rd | 417 +-- man/corPlot.Rd | 440 ++- man/cutData.Rd | 356 +- man/datePad.Rd | 134 - man/distAngle.Rd | 24 man/distEuclid.Rd | 24 man/importADMS.Rd | 363 +-- man/importEurope.Rd | 124 - man/importImperial.Rd | 392 +-- man/importMeta.Rd | 236 - man/importTraj.Rd | 312 +- man/importUKAQ-wrapper.Rd | 506 ++-- man/importUKAQ.Rd | 472 +-- man/kzFilter.Rd |only man/modStats.Rd | 400 +-- man/mydata.Rd | 98 man/openColours.Rd | 317 +- man/openSchemes.Rd |only man/openair-package.Rd | 239 +- man/percentileRose.Rd | 476 ++- man/polarAnnulus.Rd | 628 ++--- man/polarCluster.Rd | 610 +---- man/polarDiff.Rd | 645 ++--- man/polarFreq.Rd | 556 ++-- man/polarPlot.Rd | 995 ++++---- man/pollutionRose.Rd | 357 -- man/quickText.Rd | 112 man/refOpts.Rd |only man/rollingMean.Rd | 140 - man/rollingQuantile.Rd | 128 - man/rolling_gaussian_cpp.Rd | 38 man/runRegression.Rd | 134 - man/scatterPlot.Rd | 743 +++--- man/selectByDate.Rd | 146 - man/selectRunning.Rd | 164 - man/shared_openair_params.Rd | 279 +- man/smoothTrend.Rd | 561 ++-- man/splitByDate.Rd | 142 - man/timeAverage.Rd | 435 +-- man/timePlot.Rd | 729 +++--- man/timeProp.Rd | 389 +-- man/timeVariation.Rd | 642 ++--- man/trajCluster.Rd | 276 +- man/trajLevel.Rd | 698 +++-- man/trajPlot.Rd | 488 ++-- man/trendLevel.Rd | 476 ++- man/variationPlot.Rd | 433 +-- man/windRose.Rd | 603 ++--- man/windflowOpts.Rd | 172 - src/RcppExports.cpp | 31 src/kz_filters.cpp |only tests/testthat.R | 26 tests/testthat/test-GaussianSmooth.R | 326 +- tests/testthat/test-TaylorDiagram.R | 292 +- tests/testthat/test-TheilSen.R | 254 +- tests/testthat/test-WhittakerSmooth.R | 372 +-- tests/testthat/test-aqStats.R | 314 +- tests/testthat/test-bootMeans.R | 242 +- tests/testthat/test-calcPercentile.R | 314 +- tests/testthat/test-calendarPlot.R | 388 +-- tests/testthat/test-conditionalEval.R | 292 +- tests/testthat/test-conditionalQuantile.R | 318 +- tests/testthat/test-corPlot.R | 198 - tests/testthat/test-cutData.R | 382 +-- tests/testthat/test-datePad.R | 304 +- tests/testthat/test-modStats.R | 274 +- tests/testthat/test-openColours.R | 474 ++- tests/testthat/test-percentileRose.R | 224 - tests/testthat/test-polarAnnulus.R | 328 +- tests/testthat/test-polarCluster.R | 178 - tests/testthat/test-polarDiff.R | 116 tests/testthat/test-polarFreq.R | 259 +- tests/testthat/test-polarPlot.R | 348 +- tests/testthat/test-rollingMean.R | 410 +-- tests/testthat/test-rollingQuantile.R | 512 ++-- tests/testthat/test-scatterPlot.R | 310 +- tests/testthat/test-selectByDate.R | 344 +- tests/testthat/test-selectRunning.R | 400 +-- tests/testthat/test-smoothTrend.R | 306 +- tests/testthat/test-splitByDate.R | 234 - tests/testthat/test-timeAverage.R | 471 ++- tests/testthat/test-timePlot.R | 320 +- tests/testthat/test-timeProp.R | 258 +- tests/testthat/test-trajCluster.R | 146 - tests/testthat/test-trajLevel.R | 241 -- tests/testthat/test-trajPlot.R | 186 - tests/testthat/test-trendLevel.R | 307 +- tests/testthat/test-variationPlot.R | 498 ++-- tests/testthat/test-windRose.R | 238 - 175 files changed, 46322 insertions(+), 43888 deletions(-)
Title: 'CRU' 'CL' v. 2.0 Climatology Client
Description: Provides functions that automate downloading and importing
University of East Anglia Climate Research Unit ('CRU') 'CL' v. 2.0
climatology data, facilitates the calculation of minimum temperature
and maximum temperature and formats the data into a data.table object
or a 'terra' 'SpatRaster' object. 'CRU' 'CL' v. 2.0 data are a
gridded climatology of 1961-1990 monthly means released in 2002 and
cover all land areas (excluding Antarctica) at 10 arc minutes
(0.1666667 degree) resolution. For more information see the
description of the data provided by the University of East Anglia
Climate Research Unit,
<https://crudata.uea.ac.uk/cru/data/hrg/tmc/readme.txt>.
Author: Adam H. Sparks [aut, cre]
Maintainer: Adam H. Sparks <adamhsparks@gmail.com>
This is a re-admission after prior archival of version 1.0.3 dated 2025-02-08
Diff between getCRUCLdata versions 1.0.3 dated 2025-02-08 and 2.0.0 dated 2026-05-20
getCRUCLdata-1.0.3/getCRUCLdata/R/create_CRU_df.R |only getCRUCLdata-1.0.3/getCRUCLdata/R/create_CRU_stack.R |only getCRUCLdata-1.0.3/getCRUCLdata/R/get_CRU.R |only getCRUCLdata-1.0.3/getCRUCLdata/R/get_CRU_df.R |only getCRUCLdata-1.0.3/getCRUCLdata/R/get_CRU_stack.R |only getCRUCLdata-1.0.3/getCRUCLdata/R/internal_functions.R |only getCRUCLdata-1.0.3/getCRUCLdata/R/manage_cached_files.R |only getCRUCLdata-1.0.3/getCRUCLdata/inst/doc/Advanced_use.R |only getCRUCLdata-1.0.3/getCRUCLdata/inst/doc/Advanced_use.Rmd |only getCRUCLdata-1.0.3/getCRUCLdata/inst/doc/Advanced_use.html |only getCRUCLdata-1.0.3/getCRUCLdata/man/create_CRU_df.Rd |only getCRUCLdata-1.0.3/getCRUCLdata/man/create_CRU_stack.Rd |only getCRUCLdata-1.0.3/getCRUCLdata/man/get_CRU_df.Rd |only getCRUCLdata-1.0.3/getCRUCLdata/man/get_CRU_stack.Rd |only getCRUCLdata-1.0.3/getCRUCLdata/man/manage_cache.Rd |only getCRUCLdata-1.0.3/getCRUCLdata/tests/testthat/test-create_CRU_df.R |only getCRUCLdata-1.0.3/getCRUCLdata/tests/testthat/test-create_CRU_stack.R |only getCRUCLdata-1.0.3/getCRUCLdata/tests/testthat/test-create_df.R |only getCRUCLdata-1.0.3/getCRUCLdata/tests/testthat/test-create_stack.R |only getCRUCLdata-1.0.3/getCRUCLdata/tests/testthat/test-get_CRU.R |only getCRUCLdata-1.0.3/getCRUCLdata/tests/testthat/test-get_CRU_df.R |only getCRUCLdata-1.0.3/getCRUCLdata/tests/testthat/test-get_CRU_stack.R |only getCRUCLdata-1.0.3/getCRUCLdata/tests/testthat/test-validate_dsn.R |only getCRUCLdata-1.0.3/getCRUCLdata/tests/testthat/test_caching.R |only getCRUCLdata-1.0.3/getCRUCLdata/tests/testthat/test_get_local.R |only getCRUCLdata-1.0.3/getCRUCLdata/tests/testthat/test_set_cache.R |only getCRUCLdata-1.0.3/getCRUCLdata/vignettes/Advanced_use.Rmd |only getCRUCLdata-2.0.0/getCRUCLdata/DESCRIPTION | 44 - getCRUCLdata-2.0.0/getCRUCLdata/MD5 | 102 +-- getCRUCLdata-2.0.0/getCRUCLdata/NAMESPACE | 27 getCRUCLdata-2.0.0/getCRUCLdata/NEWS.md | 287 +-------- getCRUCLdata-2.0.0/getCRUCLdata/R/constants.R |only getCRUCLdata-2.0.0/getCRUCLdata/R/getCRUCLdata-package.R | 1 getCRUCLdata-2.0.0/getCRUCLdata/R/globals.R | 22 getCRUCLdata-2.0.0/getCRUCLdata/R/internal-check_gzip_support.R |only getCRUCLdata-2.0.0/getCRUCLdata/R/internal-create_dt.R |only getCRUCLdata-2.0.0/getCRUCLdata/R/internal-create_rast.R |only getCRUCLdata-2.0.0/getCRUCLdata/R/internal-dt_to_rast.R |only getCRUCLdata-2.0.0/getCRUCLdata/R/internal-file_handling.R |only getCRUCLdata-2.0.0/getCRUCLdata/R/internal-filter.R |only getCRUCLdata-2.0.0/getCRUCLdata/R/internal-make_rast.R |only getCRUCLdata-2.0.0/getCRUCLdata/R/internal-read_local_files.R |only getCRUCLdata-2.0.0/getCRUCLdata/R/internal-resolve_cru_inputs.R |only getCRUCLdata-2.0.0/getCRUCLdata/R/internal-retry_download.R |only getCRUCLdata-2.0.0/getCRUCLdata/R/internal-tidy_dt.R |only getCRUCLdata-2.0.0/getCRUCLdata/R/internal-validate.R |only getCRUCLdata-2.0.0/getCRUCLdata/R/internal-vars.R |only getCRUCLdata-2.0.0/getCRUCLdata/R/read_cru_dt.R |only getCRUCLdata-2.0.0/getCRUCLdata/R/read_cru_rast.R |only getCRUCLdata-2.0.0/getCRUCLdata/R/zzz.R | 27 getCRUCLdata-2.0.0/getCRUCLdata/README.md | 94 +-- getCRUCLdata-2.0.0/getCRUCLdata/build/vignette.rds |binary getCRUCLdata-2.0.0/getCRUCLdata/inst/WORDLIST | 53 - getCRUCLdata-2.0.0/getCRUCLdata/inst/doc/getCRUCLdata.Rmd | 221 ++----- getCRUCLdata-2.0.0/getCRUCLdata/inst/doc/getCRUCLdata.html | 298 +++------- getCRUCLdata-2.0.0/getCRUCLdata/inst/scripts |only getCRUCLdata-2.0.0/getCRUCLdata/man/dot-add_derived_dt.Rd |only getCRUCLdata-2.0.0/getCRUCLdata/man/dot-drop_source_vars_dt.Rd |only getCRUCLdata-2.0.0/getCRUCLdata/man/figures/lifecycle-deprecated.svg |only getCRUCLdata-2.0.0/getCRUCLdata/man/figures/lifecycle-experimental.svg |only getCRUCLdata-2.0.0/getCRUCLdata/man/figures/lifecycle-stable.svg |only getCRUCLdata-2.0.0/getCRUCLdata/man/figures/lifecycle-superseded.svg |only getCRUCLdata-2.0.0/getCRUCLdata/man/getCRUCLdata-package.Rd | 11 getCRUCLdata-2.0.0/getCRUCLdata/man/read_cru_dt.Rd |only getCRUCLdata-2.0.0/getCRUCLdata/man/read_cru_rast.Rd |only getCRUCLdata-2.0.0/getCRUCLdata/tests/spelling.R | 3 getCRUCLdata-2.0.0/getCRUCLdata/tests/testthat/fixtures |only getCRUCLdata-2.0.0/getCRUCLdata/tests/testthat/helper-fixtures.R |only getCRUCLdata-2.0.0/getCRUCLdata/tests/testthat/helper-mock_download.R |only getCRUCLdata-2.0.0/getCRUCLdata/tests/testthat/test-create_cru_dt.R |only getCRUCLdata-2.0.0/getCRUCLdata/tests/testthat/test-dt_to_rast.R |only getCRUCLdata-2.0.0/getCRUCLdata/tests/testthat/test-internals.R |only getCRUCLdata-2.0.0/getCRUCLdata/tests/testthat/test-mocked_download.R |only getCRUCLdata-2.0.0/getCRUCLdata/tests/testthat/test-read_cru_dt.R |only getCRUCLdata-2.0.0/getCRUCLdata/tests/testthat/test-read_cru_rast.R |only getCRUCLdata-2.0.0/getCRUCLdata/tests/testthat/test-read_local.R |only getCRUCLdata-2.0.0/getCRUCLdata/tests/testthat/test-retry_download.R |only getCRUCLdata-2.0.0/getCRUCLdata/tests/testthat/test-tidy_dt.R |only getCRUCLdata-2.0.0/getCRUCLdata/tests/testthat/test-validate.R |only getCRUCLdata-2.0.0/getCRUCLdata/vignettes/getCRUCLdata.Rmd | 221 ++----- getCRUCLdata-2.0.0/getCRUCLdata/vignettes/getCRUCLdata.Rmd.orig | 199 ++---- getCRUCLdata-2.0.0/getCRUCLdata/vignettes/plot_t-1.png |binary getCRUCLdata-2.0.0/getCRUCLdata/vignettes/precompile.R | 8 getCRUCLdata-2.0.0/getCRUCLdata/vignettes/violin_plot-1.png |binary 84 files changed, 532 insertions(+), 1086 deletions(-)
Title: R Interface to Yandex Metrica API
Description: Allows work with 'Management API' for load counters, segments, filters,
user permissions and goals list from Yandex Metrica, 'Reporting API' allows you to get
information about the statistics of site visits and other data without
using the web interface, 'Logs API' allows to receive non-aggregated data and
'Compatible with Google Analytics Core Reporting API v3' allows
receive information about site traffic and other data using field names
from Google Analytics Core API. For more information see official
documents <https://yandex.ru/dev/metrika/doc/api2/concept/about-docpage>.
Author: Alexey Seleznev [aut, cre] ,
Netpeak [cph]
Maintainer: Alexey Seleznev <selesnow@gmail.com>
Diff between rym versions 1.0.6 dated 2023-03-17 and 1.1.2 dated 2026-05-20
DESCRIPTION | 11 - MD5 | 44 +++--- NAMESPACE | 2 NEWS.md | 13 ++ R/rym_auth.R | 189 ++++++++++++++---------------- README.md | 9 - build/partial.rdb |binary build/vignette.rds |binary inst/doc/intro-to-rym.html | 17 +- inst/doc/rym-calls.R | 30 ++-- inst/doc/rym-calls.html | 31 ++-- inst/doc/rym-ga-api.html | 23 +-- inst/doc/rym-load-expense.R | 74 +++++------ inst/doc/rym-load-expense.html | 79 ++++++------ inst/doc/rym-load-offline-conversion.R | 44 +++--- inst/doc/rym-load-offline-conversion.Rmd | 2 inst/doc/rym-load-offline-conversion.html | 47 +++---- inst/doc/rym-logs-api.html | 23 +-- inst/doc/rym-management-api.R | 82 ++++++------- inst/doc/rym-management-api.html | 87 ++++++------- inst/doc/rym-reporting-api.html | 27 ++-- man/rym-offline-conversion.Rd | 2 vignettes/rym-load-offline-conversion.Rmd | 2 23 files changed, 430 insertions(+), 408 deletions(-)
Title: Extra Binary Relational and Logical Operators
Description: Speed up common tasks, particularly logical or
relational comparisons and routine follow up tasks such as finding the
indices and subsetting. Inspired by mathematics, where something like:
3 < x < 6 is a standard, elegant and clear way to assert that
x is both greater than 3 and less than 6
(see for example <https://en.wikipedia.org/wiki/Relational_operator>),
a chaining operator is implemented. The chaining operator, %c%,
allows multiple relational operations to be used in quotes on the right
hand side for the same object, on the left hand side.
The %e% operator allows something like set-builder notation
(see for example <https://en.wikipedia.org/wiki/Set-builder_notation>)
to be used on the right hand side.
Operators have built in prefixes defined for all, any, subset, and which
to reduce the amount of code needed for common tasks, such as return those
values that are true.
Author: Joshua F. Wiley [aut, cre]
Maintainer: Joshua F. Wiley <jwiley.psych@gmail.com>
Diff between extraoperators versions 0.3.0 dated 2023-12-13 and 0.4.0 dated 2026-05-20
DESCRIPTION | 15 +- MD5 | 46 ++++---- NAMESPACE | 20 +++ NEWS.md | 12 +- R/identity.R |only R/logical_all.R | 66 +++++------- R/logical_any.R |only R/logicals.R | 175 +++++++++++++++++++++------------ R/subsetting.R | 52 +++------ R/which.R | 54 ++++------ README.md | 70 +++++++------ build/vignette.rds |binary inst/doc/logicals-vignette.R | 61 +++++++++++ inst/doc/logicals-vignette.Rmd | 115 ++++++++++++++++++--- inst/doc/logicals-vignette.html | 211 ++++++++++++++++++++++++++++------------ man/grapes-c-grapes.Rd | 11 +- man/grapes-e-grapes.Rd | 7 - man/identity_operators.Rd |only man/logicalall.Rd | 7 - man/logicalany.Rd |only man/logicals.Rd | 11 +- man/logicalwhich.Rd | 9 - man/subsetting.Rd | 7 - tests/testthat/test-any.R |only tests/testthat/test-identity.R |only tests/testthat/test-logicals.R | 37 ++++--- vignettes/logicals-vignette.Rmd | 115 ++++++++++++++++++--- 27 files changed, 746 insertions(+), 355 deletions(-)
More information about extraoperators at CRAN
Permanent link
Title: Bayesian Analysis of Change Point Problems
Description: Provides an implementation of the product partition model described in Barry and Hartigan (2019) <doi:10.2307/2290726> for the normal errors change point problem using Markov Chain Monte Carlo (MCMC). It also extends the methodology to regression models on a connected graph as reported in Wang and Emerson (2015) <doi:10.48550/arXiv.1509.00817>, allowing estimation of change point models with multivariate responses. Parallel MCMC, previously available in 'bcp' v.3.0.0, is currently not implemented.
Author: Xiaofei Wang [aut],
Chandra Erdman [aut],
John W. Emerson [aut],
Kaiguang Zhao [aut, cre]
Maintainer: Kaiguang Zhao <zhao.1423@osu.edu>
This is a re-admission after prior archival of version 4.0.3 dated 2018-08-13
Diff between bcp versions 4.0.3 dated 2018-08-13 and 4.0.4 dated 2026-05-20
DESCRIPTION | 43 +++++++++++++++++++++++------------ MD5 | 60 ++++++++++++++++++++++++------------------------- R/RcppExports.R | 38 +++++++++++++++---------------- R/bcp-data.R | 8 +++--- R/bcp.R | 10 ++++---- R/output.R | 1 README.md | 2 - demo/NewHaven.R | 41 ++++++++++++++++++--------------- inst/CITATION | 27 +++++++++++++--------- man/NewHavenHousing.Rd | 4 +-- man/RealInt.Rd | 7 ++++- man/bcp.Rd | 20 ++++++++-------- man/coriell.Rd | 4 +-- man/interval.prob.Rd | 2 - man/legacyplot.Rd | 1 man/lombard.Rd | 2 - man/makeAdjGrid.Rd | 19 ++++++++------- man/plot.bcp.Rd | 2 + man/summary.bcp.Rd | 5 ++-- src/Cbcp.cpp | 28 ++++++++++++---------- src/CbcpM.cpp | 6 +++- src/Cbcpgraph.cpp | 18 ++++++++------ src/CbcpgraphR.cpp | 21 +++++++++-------- src/Graph.h | 58 +++++++++++++++++++++++------------------------ src/HelperVariables.h | 10 ++++---- src/MCMC.h | 34 +++++++++++++-------------- src/Makevars | 3 +- src/Makevars.win | 3 +- src/Params.h | 2 - src/RcppExports.cpp | 41 ++++++++++++++++++--------------- src/utils.cpp | 14 +++++------ 31 files changed, 295 insertions(+), 239 deletions(-)
Title: Linear Latent Non-Gaussian Models with Flexible Distributions
Description: Fits and analyzes linear latent non-Gaussian models for
temporal, spatial, and space-time data. The package provides model
components for autoregressive and Ornstein-Uhlenbeck processes, random
walks, Matern fields based on stochastic partial differential equations,
separable and non-separable space-time models, graph-based Matern models,
bivariate type-G fields, and user-defined sparse operators. Latent fields
and observation models can use Gaussian and non-Gaussian noise
distributions, including normal inverse Gaussian, generalized asymmetric
Laplace, and skew-t distributions. Functions are included for simulation,
likelihood-based estimation, prediction, cross-validation, convergence
diagnostics, stochastic gradient optimization, batch-means confidence
intervals, and posterior-like sampling. The modeling framework is described
in Bolin, Jin, Simas and Wallin (2026) "A Unified and Computationally
Efficient Non-Gaussian Statistical Modeling Framework"
<doi:10.48550/arXiv.2602.23987 [...truncated...]
Author: David Bolin [aut, cph],
Xiaotian Jin [aut, cre],
Alexandre Simas [aut],
Jonas Wallin [aut],
Andrea V. Rocha [ctb] ,
Timothy A. Davis [ctb, cph] ,
Patrick R. Amestoy [ctb, cph] ,
Iain S. Duff [ctb, cph] ,
John K. Reid [ctb, cph] ,
Yanqing Chen [ctb, c [...truncated...]
Maintainer: Xiaotian Jin <xiaotian.jin@kaust.edu.sa>
Diff between ngme2 versions 0.9.7 dated 2026-04-28 and 0.9.8 dated 2026-05-20
DESCRIPTION | 6 - MD5 | 21 ++-- NAMESPACE | 4 NEWS.md | 36 ++++++- R/info_datasets.R | 30 +++++ R/models.R | 52 ++-------- R/noise.R | 152 ++++++++++++++++++++++++++++++ R/predict.R | 39 +++++++ data/pm25_quarterly_2022.rda |only man/noise_moments.Rd |only man/pm25_quarterly_2022.Rd |only man/precision_matrix_multivariate_spde.Rd | 52 ++-------- tests/testthat/test-core-noise-moments.R |only tests/testthat/test-predict-normal-nig.R |only 14 files changed, 298 insertions(+), 94 deletions(-)
Title: Lasso Penalized Precision Matrix Estimation
Description: Estimates a lasso penalized precision matrix via blockwise coordinate descent (BCD). This package is a simple wrapper around the popular 'glasso' package and extends and enhances its capabilities. These enhancements include built-in cross validation and visualizations.
See Friedman et al. (2008) <doi:10.1093/biostatistics/kxm045> for details regarding the estimation method.
Author: Matt Galloway [aut],
James Curran [aut, cre]
Maintainer: James Curran <j.curran@auckland.ac.nz>
Diff between CVglasso versions 1.0 dated 2018-06-04 and 1.0.1 dated 2026-05-20
DESCRIPTION | 43 +- MD5 | 29 - NEWS.md |only R/CV.R | 34 - R/CVP.R | 31 - R/glasso.R | 871 +++++++++++++++++++++--------------------- build |only inst |only man/CV.Rd | 20 man/CVP.Rd | 18 man/CVglasso.Rd | 34 + man/plot.CVglasso.Rd | 8 tests/testthat/testCVglasso.R | 77 +-- vignettes |only 14 files changed, 613 insertions(+), 552 deletions(-)
Title: Climate Tools (Series Homogenization and Derived Products)
Description: Functions for the quality control, homogenization and missing data filling of climatological series and to obtain climatological summaries and grids from the results. Also functions to display wind-roses, meteograms, Walter&Lieth diagrams, and more.
Author: Jose A. Guijarro [aut, cre]
Maintainer: Jose A. Guijarro <jaguijarro21@gmail.com>
Diff between climatol versions 4.4-0 dated 2025-12-17 and 4.5-0 dated 2026-05-20
DESCRIPTION | 8 - MD5 | 18 +- NAMESPACE | 2 NEWS | 22 +++ R/clihomog.R | 337 +++++++++++++++++++++++++---------------------- R/clitools.R | 13 - man/climatol2rclimdex.Rd | 4 man/homogen.Rd | 51 +++---- man/meteogram.Rd | 2 man/outrename.Rd | 7 10 files changed, 254 insertions(+), 210 deletions(-)
Title: Spatial Analysis and Modelling Utilities
Description: Utilities to support spatial data manipulation, query, sampling
and modelling in ecological applications. Functions include models for species
population density, spatial smoothing, multivariate separability, point process
model for creating pseudo- absences and sub-sampling, Quadrant-based sampling and
analysis, auto-logistic modeling, sampling models, cluster optimization, statistical
exploratory tools and raster-based metrics.
Author: Jeffrey S. Evans [aut, cre] ,
Melanie A. Murphy [ctb],
Karthik Ram [ctb]
Maintainer: Jeffrey S. Evans <sage_insights@outlook.com>
Diff between spatialEco versions 2.0-4 dated 2026-04-04 and 2.0-5 dated 2026-05-20
DESCRIPTION | 10 MD5 | 456 +++++++++++++++++++-------------------- R/annulus.matrix.R | 2 R/aspline.downscale.R | 4 R/background.R | 2 R/bbox_poly.R | 2 R/bearing.distance.R | 2 R/breeding.density.R | 2 R/built.index.R | 2 R/chae.R | 2 R/classBreaks.R | 2 R/collinear.R | 2 R/combine.R | 2 R/concordance.R | 2 R/conf.interval.R | 2 R/correlogram.R | 2 R/cross.tab.R | 2 R/csi.R | 33 ++ R/curvature.R | 2 R/dahi.R | 2 R/date_seq.R | 2 R/daymet.point.R | 2 R/daymet.tiles.R | 2 R/dispersion.R | 2 R/dissection.R | 2 R/divergence.R | 2 R/effect.size.R | 2 R/extract_vertices.R | 2 R/fuzzySum.R | 2 R/gaussian.kernel.R | 2 R/geo.buffer.R | 2 R/hli.R | 2 R/hli.pt.R | 2 R/hsp.R | 2 R/hybrid.kmeans.R | 2 R/insert.R | 2 R/insert.values.R | 2 R/is.empty.R | 2 R/kendall.R | 2 R/kl.divergence.R | 2 R/knn.R | 2 R/lai.R | 2 R/local.min.max.R | 2 R/loess.boot.R | 2 R/loess.ci.R | 2 R/logistic.regression.R | 2 R/max_extent.R | 2 R/mean_angle.R | 2 R/moments.R | 2 R/morans.plot.R | 2 R/nni.R | 2 R/nth.values.R | 2 R/o.ring.R | 2 R/optimized.sample.variance.R | 2 R/outliers.R | 2 R/overlap.R | 2 R/parea.sample.R | 2 R/parse.bits.R | 2 R/partial.cor.R | 2 R/plot.effect.size.R | 2 R/plot.loess.boot.R | 2 R/poly.regression.R | 2 R/polyPerimeter.R | 2 R/poly_trend.R | 2 R/pp.subsample.R | 2 R/proximity.index.R | 2 R/pseudo.absence.R | 2 R/quadrats.R | 2 R/random.raster.R | 2 R/raster.Zscore.R | 2 R/raster.change.R | 2 R/raster.deviation.R | 2 R/raster.downscale.R | 4 R/raster.entropy.R | 2 R/raster.gaussian.smooth.R | 2 R/raster.invert.R | 2 R/raster.kendall.R | 2 R/raster.mds.R | 2 R/raster.modified.ttest.R | 2 R/raster.moments.R | 2 R/raster.transformations.R | 2 R/raster.vol.R | 2 R/rasterCorrelation.R | 2 R/rasterDistance.R | 2 R/remove.holes.R | 2 R/remove_duplicates.R | 2 R/sa.trans.R | 12 - R/sample.annulus.R | 2 R/sampleTransect.R | 2 R/sar.R | 2 R/separability.R | 2 R/sf.kde.R | 14 - R/sf_dissolve.R | 2 R/shannons.R | 2 R/shift.R | 2 R/sieve.R | 2 R/similarity.R | 2 R/smooth.time.series.R | 2 R/sobel.R | 2 R/spatial.select.R | 2 R/spectral.separability.R | 2 R/squareBuffer.R | 2 R/srr.R | 2 R/stratified.random.R | 2 R/subsample.distance.R | 2 R/swvi.R | 2 R/time_to_event.R | 2 R/topo.distance.R | 2 R/tpi.R | 2 R/trasp.R | 2 R/trend.line.R | 2 R/tri.R | 2 R/vrm.R | 2 R/winsorize.R | 2 R/wt.centroids.R | 2 R/z_normalization.R | 2 inst/NEWS | 14 + man/annulus.matrix.Rd | 2 man/aspline.downscale.Rd | 4 man/background.Rd | 2 man/bbox_poly.Rd | 2 man/bearing.distance.Rd | 2 man/breeding.density.Rd | 2 man/built.index.Rd | 2 man/chae.Rd | 2 man/classBreaks.Rd | 2 man/collinear.Rd | 2 man/combine.Rd | 2 man/concordance.Rd | 2 man/conf.interval.Rd | 2 man/correlogram.Rd | 2 man/cross.tab.Rd | 2 man/csi.Rd | 4 man/curvature.Rd | 2 man/dahi.Rd | 2 man/date_seq.Rd | 2 man/daymet.point.Rd | 2 man/daymet.tiles.Rd | 2 man/dispersion.Rd | 2 man/dissection.Rd | 2 man/divergence.Rd | 2 man/effect.size.Rd | 2 man/extract.vertices.Rd | 2 man/fuzzySum.Rd | 2 man/gaussian.kernel.Rd | 2 man/geo.buffer.Rd | 2 man/hli.Rd | 2 man/hli.pt.Rd | 2 man/hsp.Rd | 2 man/hybrid.kmeans.Rd | 2 man/insert.Rd | 2 man/insert.values.Rd | 2 man/is.empty.Rd | 2 man/kendall.Rd | 2 man/kl.divergence.Rd | 2 man/knn.Rd | 2 man/lai.Rd | 2 man/local.min.max.Rd | 2 man/loess.boot.Rd | 2 man/loess.ci.Rd | 2 man/logistic.regression.Rd | 2 man/max_extent.Rd | 2 man/mean_angle.Rd | 2 man/moments.Rd | 2 man/morans.plot.Rd | 2 man/nni.Rd | 2 man/nth.values.Rd | 2 man/o.ring.Rd | 2 man/optimized.sample.variance.Rd | 2 man/outliers.Rd | 2 man/overlap.Rd | 2 man/parea.sample.Rd | 2 man/parse.bits.Rd | 2 man/partial.cor.Rd | 2 man/plot.effect.size.Rd | 2 man/plot.loess.boot.Rd | 2 man/poly.regression.Rd | 2 man/polyPerimeter.Rd | 2 man/poly_trend.Rd | 2 man/pp.subsample.Rd | 2 man/proximity.index.Rd | 2 man/pseudo.absence.Rd | 2 man/quadrats.Rd | 2 man/random.raster.Rd | 2 man/raster.Zscore.Rd | 2 man/raster.change.Rd | 2 man/raster.deviation.Rd | 2 man/raster.downscale.Rd | 4 man/raster.entropy.Rd | 2 man/raster.gaussian.smooth.Rd | 2 man/raster.invert.Rd | 2 man/raster.kendall.Rd | 2 man/raster.mds.Rd | 2 man/raster.modified.ttest.Rd | 2 man/raster.moments.Rd | 2 man/raster.transformation.Rd | 2 man/raster.vol.Rd | 2 man/rasterCorrelation.Rd | 2 man/rasterDistance.Rd | 2 man/remove.holes.Rd | 2 man/remove_duplicates.Rd | 2 man/sample.annulus.Rd | 2 man/sampleTransect.Rd | 2 man/sar.Rd | 2 man/separability.Rd | 2 man/sf_dissolve.Rd | 2 man/shannons.Rd | 2 man/shift.Rd | 2 man/sieve.Rd | 2 man/similarity.Rd | 2 man/smooth.time.series.Rd | 2 man/sobal.Rd | 2 man/spatial.select.Rd | 2 man/spectral.separability.Rd | 2 man/squareBuffer.Rd | 2 man/srr.Rd | 2 man/stratified.random.Rd | 2 man/subsample.distance.Rd | 2 man/swvi.Rd | 2 man/time_to_event.Rd | 2 man/topo.distance.Rd | 2 man/tpi.Rd | 2 man/trasp.Rd | 2 man/trend.line.Rd | 2 man/tri.Rd | 2 man/vrm.Rd | 2 man/winsorize.Rd | 2 man/wt.centroid.Rd | 2 man/z_normalization.Rd | 2 229 files changed, 511 insertions(+), 484 deletions(-)
Title: Load Data From 'Yandex Direct'
Description: Load data from 'Yandex Direct' API V5
<https://yandex.ru/dev/direct/doc/dg/concepts/about-docpage> into R.
Provide function for load lists of campaings, ads, keywords and other
objects from 'Yandex Direct' account. Also you can load statistic from
API 'Reports Service' <https://yandex.ru/dev/direct/doc/reports/reports-docpage>.
And allows keyword bids management.
Author: Alexey Seleznev [aut, cre]
Maintainer: Alexey Seleznev <selesnow@gmail.com>
Diff between ryandexdirect versions 3.6.2 dated 2023-03-17 and 3.6.6 dated 2026-05-20
DESCRIPTION | 14 - MD5 | 43 +-- NAMESPACE | 4 NEWS.md | 12 R/methods.R | 5 R/yadirAuth.R | 157 +++++++----- R/yadirGetCampaign.R | 280 ++++++++-------------- R/zzz.R | 4 README.md | 3 build/partial.rdb |binary build/vignette.rds |binary inst/doc/yandex-direct-auth.R | 12 inst/doc/yandex-direct-auth.html | 17 - inst/doc/yandex-direct-cost-data.R | 46 +-- inst/doc/yandex-direct-cost-data.html | 101 ++++--- inst/doc/yandex-direct-get-statistic.R | 138 +++++----- inst/doc/yandex-direct-get-statistic.html | 143 +++++------ inst/doc/yandex-direct-get-wordstat-forecast.R | 112 ++++---- inst/doc/yandex-direct-get-wordstat-forecast.html | 123 ++++----- inst/doc/yandex-direct-keyword-bids.R | 248 +++++++++---------- inst/doc/yandex-direct-keyword-bids.html | 227 ++++++++--------- man/print.yadir_token.Rd |only man/yadirGetCampaign.Rd | 2 23 files changed, 845 insertions(+), 846 deletions(-)
Title: Rapid Realistic Routing with 'R5'
Description: Rapid realistic routing on multimodal transport networks
(walk, bike, public transport and car) using 'R5', the Rapid Realistic
Routing on Real-world and Reimagined networks engine
<https://github.com/conveyal/r5>. The package allows users to generate
detailed routing analysis or calculate travel time and monetary cost matrices
using seamless parallel computing on top of the R5 Java machine. While R5
is developed by Conveyal, the package r5r is independently developed
by a team at the Institute for Applied Economic Research (Ipea) with
contributions from collaborators. Apart from the documentation in this
package, users will find additional information on R5 documentation at
<https://docs.conveyal.com/>. Although we try to keep new releases of
r5r in synchrony with R5, the development of R5 follows Conveyal's
independent update process. Hence, users should confirm the R5 version
implied by the Conveyal user manual (see
<https://docs.conveyal.com/changelog>) correspon [...truncated...]
Author: Marcus Saraiva [aut] ,
Rafael H. M. Pereira [aut, cre] ,
Daniel Herszenhut [aut] ,
Alex Magnus [aut],
Matthew Wigginton Bhagat-Conway [aut] ,
Carlos Kaue Vieira Braga [ctb] ,
Luyu Liu [ctb] ,
Egor Kotov [ctb] ,
Daniel Snow [ctb],
Ipea - Institute for [...truncated...]
Maintainer: Rafael H. M. Pereira <rafa.pereira.br@gmail.com>
Diff between r5r versions 2.3.0 dated 2025-08-21 and 2.4.0 dated 2026-05-20
DESCRIPTION | 18 MD5 | 241 - NAMESPACE | 3 NEWS.md | 53 R/accessibility.R | 605 +-- R/arrival_travel_time_matrix.R | 15 R/build_network.R | 333 - R/check_transit_availability.R |only R/detailed_itineraries.R | 33 R/download_r5.R | 206 - R/expanded_travel_time_matrix.R | 19 R/get_gtfs_errors.R |only R/isochrone.R | 701 +-- R/onLoad.R | 70 R/pareto_frontier.R | 5 R/set.R | 56 R/setup_r5.R | 138 R/street_network_bbox.R |only R/surface_isochrone.R |only R/travel_time_matrix.R | 19 R/travel_time_surface.R |only R/utils.R | 8 R/webmercator.R |only build/partial.rdb |binary build/vignette.rds |binary inst/doc/accessibility.R | 268 - inst/doc/accessibility.Rmd | 72 inst/doc/accessibility.html | 138 inst/doc/detailed_itineraries.R | 120 inst/doc/detailed_itineraries.Rmd | 22 inst/doc/detailed_itineraries.html | 55 inst/doc/faq.Rmd | 208 - inst/doc/faq.html | 4 inst/doc/fare_structure.R | 405 +- inst/doc/fare_structure.Rmd | 989 ++--- inst/doc/fare_structure.html | 233 - inst/doc/isochrones.R | 213 - inst/doc/isochrones.Rmd | 131 inst/doc/isochrones.html | 210 - inst/doc/pareto_frontier.R | 211 - inst/doc/pareto_frontier.Rmd | 493 +- inst/doc/pareto_frontier.html | 72 inst/doc/r5r.R | 220 - inst/doc/r5r.Rmd | 2 inst/doc/r5r.html | 103 inst/doc/scenarios.R | 330 - inst/doc/scenarios.html | 5489 ----------------------------- inst/doc/time_window.R | 178 inst/doc/time_window.Rmd | 418 +- inst/doc/time_window.html | 147 inst/doc/travel_time_matrix.R | 184 inst/doc/travel_time_matrix.Rmd | 422 +- inst/doc/travel_time_matrix.html | 182 inst/extdata/metadata_r5r.csv | 1 inst/extdata/poa/network_settings.json |only inst/extdata/poa/poa_osm.pbf.mapdb |only inst/jar/r5r.jar |binary man/accessibility.Rd | 7 man/arrival_travel_time_matrix.Rd | 2 man/build_network.Rd | 7 man/check_transit_availability.Rd |only man/congestion_poly2geojson.Rd | 2 man/detailed_itineraries.Rd | 19 man/download_r5.Rd | 2 man/exists_tiff.Rd | 2 man/expanded_travel_time_matrix.Rd | 2 man/fileurl_from_metadata.Rd | 2 man/find_snap.Rd | 3 man/get_gtfs_errors.Rd |only man/isochrone.Rd | 37 man/lts_lines2shp.Rd | 2 man/pareto_frontier.Rd | 2 man/r5r.Rd | 1 man/r5r_cache.Rd | 2 man/r5r_sitrep.Rd | 2 man/read_fare_structure.Rd | 2 man/reverse_back_if_direct_mode.Rd |only man/reverse_if_direct_mode.Rd | 7 man/roxygen/templates/elevation.R | 5 man/roxygen/templates/elevation_section.R | 28 man/roxygen/templates/percentiles.R |only man/set_breakdown.Rd | 1 man/set_cutoffs.Rd | 1 man/set_elevation.Rd | 1 man/set_expanded_travel_times.Rd | 1 man/set_fare_cutoffs.Rd | 1 man/set_fare_structure.Rd | 1 man/set_max_fare.Rd | 1 man/set_max_lts.Rd | 1 man/set_max_rides.Rd | 1 man/set_monte_carlo_draws.Rd | 1 man/set_n_threads.Rd | 1 man/set_new_congestion.Rd | 1 man/set_new_lts.Rd | 1 man/set_output_dir.Rd | 1 man/set_percentiles.Rd | 1 man/set_progress.Rd | 1 man/set_speed.Rd | 1 man/set_suboptimal_minutes.Rd | 1 man/set_time_window.Rd | 1 man/set_verbose.Rd | 1 man/setup_fare_structure.Rd | 2 man/setup_r5.Rd | 7 man/start_r5r_java.Rd | 2 man/stop_r5.Rd | 4 man/street_network_bbox.Rd |only man/street_network_to_sf.Rd | 3 man/tempdir_unique.Rd | 2 man/transit_network_to_sf.Rd | 3 man/travel_time_matrix.Rd | 2 man/travel_time_surface.Rd |only man/validate_bad_osm_ids.Rd | 64 man/write_fare_structure.Rd | 2 tests/tests_rafa/issue_534.R |only tests/tests_rafa/osm_ids.R | 244 - tests/tests_rafa/r5r_arrow.R | 145 tests/tests_rafa/test_rafa.R | 1936 +++++----- tests/testthat/test-build_network.R | 327 + tests/testthat/test-isochrone.R | 14 tests/testthat/test-street_network_bbox.R |only tests/testthat/test-transit_availability.R |only vignettes/accessibility.Rmd | 72 vignettes/detailed_itineraries.Rmd | 22 vignettes/faq.Rmd | 208 - vignettes/fare_structure.Rmd | 989 ++--- vignettes/isochrones.Rmd | 131 vignettes/pareto_frontier.Rmd | 493 +- vignettes/r5r.Rmd | 2 vignettes/time_window.Rmd | 418 +- vignettes/travel_time_matrix.Rmd | 422 +- 130 files changed, 7057 insertions(+), 12656 deletions(-)
Title: Simulate from ODE-Based Models
Description: Fast simulation from ordinary differential equation
(ODE) based models typically employed in quantitative pharmacology and
systems biology.
Author: Kyle T Baron [aut, cre] ,
Bill Gillespie [ctb],
Charles Margossian [ctb],
Devin Pastoor [ctb],
Bill Denney [ctb] ,
Dilawar Singh [ctb],
Felicien Le Louedec [ctb] ,
Timothy Waterhouse [ctb] ,
Kyle Meyer [ctb],
Metrum Research Group [cph]
Maintainer: Kyle T Baron <kyleb@metrumrg.com>
Diff between mrgsolve versions 1.7.2 dated 2026-01-22 and 2.0.1 dated 2026-05-20
mrgsolve-1.7.2/mrgsolve/R/r_to_cpp.R |only mrgsolve-1.7.2/mrgsolve/R/render.R |only mrgsolve-1.7.2/mrgsolve/man/cama.Rd |only mrgsolve-1.7.2/mrgsolve/man/plot_batch_mrgsims.Rd |only mrgsolve-1.7.2/mrgsolve/man/render.Rd |only mrgsolve-1.7.2/mrgsolve/src/housemodel-mread-header.h |only mrgsolve-1.7.2/mrgsolve/tests/testthat/test-knobs.R |only mrgsolve-1.7.2/mrgsolve/tests/testthat/test-workflow.R |only mrgsolve-2.0.1/mrgsolve/DESCRIPTION | 19 mrgsolve-2.0.1/mrgsolve/MD5 | 217 +- mrgsolve-2.0.1/mrgsolve/NAMESPACE | 18 mrgsolve-2.0.1/mrgsolve/NEWS.md | 149 + mrgsolve-2.0.1/mrgsolve/R/Aaaa.R | 20 mrgsolve-2.0.1/mrgsolve/R/RcppExports.R | 66 mrgsolve-2.0.1/mrgsolve/R/class_build.R | 11 mrgsolve-2.0.1/mrgsolve/R/class_mrgmod.R | 51 mrgsolve-2.0.1/mrgsolve/R/class_mrgsims.R | 10 mrgsolve-2.0.1/mrgsolve/R/compile.R | 276 +-- mrgsolve-2.0.1/mrgsolve/R/custom-tol.R | 27 mrgsolve-2.0.1/mrgsolve/R/data_set.R | 78 mrgsolve-2.0.1/mrgsolve/R/dsl-preprocess-addin.R |only mrgsolve-2.0.1/mrgsolve/R/env.R | 106 - mrgsolve-2.0.1/mrgsolve/R/events.R | 19 mrgsolve-2.0.1/mrgsolve/R/generics.R | 2 mrgsolve-2.0.1/mrgsolve/R/handle_spec_block.R | 224 +- mrgsolve-2.0.1/mrgsolve/R/idata_set.R | 66 mrgsolve-2.0.1/mrgsolve/R/init.R | 6 mrgsolve-2.0.1/mrgsolve/R/knobs.R | 293 --- mrgsolve-2.0.1/mrgsolve/R/matrix.R | 1 mrgsolve-2.0.1/mrgsolve/R/model_include.R | 50 mrgsolve-2.0.1/mrgsolve/R/modlib.R | 359 +--- mrgsolve-2.0.1/mrgsolve/R/modspec.R | 353 +++ mrgsolve-2.0.1/mrgsolve/R/mread.R | 175 - mrgsolve-2.0.1/mrgsolve/R/mrgsim_q.R | 2 mrgsolve-2.0.1/mrgsolve/R/mrgsims.R | 177 + mrgsolve-2.0.1/mrgsolve/R/mrgsolve.R | 19 mrgsolve-2.0.1/mrgsolve/R/nm-mode.R | 35 mrgsolve-2.0.1/mrgsolve/R/nmxml.R | 6 mrgsolve-2.0.1/mrgsolve/R/package.R | 1 mrgsolve-2.0.1/mrgsolve/R/print.R | 1 mrgsolve-2.0.1/mrgsolve/R/utils.R | 27 mrgsolve-2.0.1/mrgsolve/R/workflows.R | 75 mrgsolve-2.0.1/mrgsolve/inst/WORDLIST | 9 mrgsolve-2.0.1/mrgsolve/inst/base/modelheader.h | 75 mrgsolve-2.0.1/mrgsolve/inst/base/mrgsolv.h | 47 mrgsolve-2.0.1/mrgsolve/inst/base/mrgsolve-evtools-regimen.h | 2 mrgsolve-2.0.1/mrgsolve/inst/include/dataobject.h | 1 mrgsolve-2.0.1/mrgsolve/inst/include/odeproblem.h | 5 mrgsolve-2.0.1/mrgsolve/inst/models/1005.cpp | 30 mrgsolve-2.0.1/mrgsolve/inst/models/MODLIST | 2 mrgsolve-2.0.1/mrgsolve/inst/models/emax.cpp | 14 mrgsolve-2.0.1/mrgsolve/inst/models/irm1.cpp | 6 mrgsolve-2.0.1/mrgsolve/inst/models/irm2.cpp | 16 mrgsolve-2.0.1/mrgsolve/inst/models/irm3.cpp | 16 mrgsolve-2.0.1/mrgsolve/inst/models/irm4.cpp | 22 mrgsolve-2.0.1/mrgsolve/inst/models/nm-like.cpp | 33 mrgsolve-2.0.1/mrgsolve/inst/models/pk1.cpp | 4 mrgsolve-2.0.1/mrgsolve/inst/models/pk1cmt.cpp | 34 mrgsolve-2.0.1/mrgsolve/inst/models/pk2.cpp | 4 mrgsolve-2.0.1/mrgsolve/inst/models/pk2cmt.cpp | 24 mrgsolve-2.0.1/mrgsolve/inst/models/pk2iv.cpp | 2 mrgsolve-2.0.1/mrgsolve/inst/models/pk3.cpp |only mrgsolve-2.0.1/mrgsolve/inst/models/pk3cmt.cpp | 34 mrgsolve-2.0.1/mrgsolve/inst/models/pk3iv.cpp |only mrgsolve-2.0.1/mrgsolve/inst/models/tmdd.cpp | 14 mrgsolve-2.0.1/mrgsolve/inst/mrgx/mrgx.h | 123 + mrgsolve-2.0.1/mrgsolve/inst/rstudio |only mrgsolve-2.0.1/mrgsolve/man/PKMODEL.Rd | 89 mrgsolve-2.0.1/mrgsolve/man/convert_fort_if_impl.Rd |only mrgsolve-2.0.1/mrgsolve/man/convert_pow_impl.Rd |only mrgsolve-2.0.1/mrgsolve/man/convert_semicolons_impl.Rd |only mrgsolve-2.0.1/mrgsolve/man/data_set.Rd | 37 mrgsolve-2.0.1/mrgsolve/man/dsl_preprocess.Rd |only mrgsolve-2.0.1/mrgsolve/man/env_eval.Rd | 6 mrgsolve-2.0.1/mrgsolve/man/env_get.Rd | 54 mrgsolve-2.0.1/mrgsolve/man/ev_ops.Rd | 3 mrgsolve-2.0.1/mrgsolve/man/idata_set.Rd | 38 mrgsolve-2.0.1/mrgsolve/man/knobs.Rd | 77 mrgsolve-2.0.1/mrgsolve/man/modelparse.Rd | 28 mrgsolve-2.0.1/mrgsolve/man/modelsplit.Rd |only mrgsolve-2.0.1/mrgsolve/man/modlib.Rd | 1 mrgsolve-2.0.1/mrgsolve/man/modlib_details.Rd | 67 mrgsolve-2.0.1/mrgsolve/man/modlib_pk.Rd | 41 mrgsolve-2.0.1/mrgsolve/man/modlib_pkpd.Rd | 32 mrgsolve-2.0.1/mrgsolve/man/modlib_tmdd.Rd | 36 mrgsolve-2.0.1/mrgsolve/man/modlib_viral.Rd | 39 mrgsolve-2.0.1/mrgsolve/man/mrgsims_dplyr.Rd | 18 mrgsolve-2.0.1/mrgsolve/man/nmext.Rd | 2 mrgsolve-2.0.1/mrgsolve/man/nmxml.Rd | 2 mrgsolve-2.0.1/mrgsolve/man/plot_mrgsims.Rd | 46 mrgsolve-2.0.1/mrgsolve/man/warn_int_div_impl.Rd |only mrgsolve-2.0.1/mrgsolve/man/wf_sweep.Rd | 32 mrgsolve-2.0.1/mrgsolve/src/RcppExports.cpp | 58 mrgsolve-2.0.1/mrgsolve/src/dataobject.cpp | 6 mrgsolve-2.0.1/mrgsolve/src/datarecord.cpp | 41 mrgsolve-2.0.1/mrgsolve/src/devtran.cpp | 104 - mrgsolve-2.0.1/mrgsolve/src/dsl-preprocess.cpp |only mrgsolve-2.0.1/mrgsolve/src/housemodel-mread-source.cpp | 159 + mrgsolve-2.0.1/mrgsolve/src/lsoda_functions.h | 10 mrgsolve-2.0.1/mrgsolve/src/mrgsolve.cpp | 46 mrgsolve-2.0.1/mrgsolve/src/mrgsolve_init.cpp | 12 mrgsolve-2.0.1/mrgsolve/src/odeproblem.cpp | 275 ++- mrgsolve-2.0.1/mrgsolve/tests/testthat/nm/1005-both.cpp | 1 mrgsolve-2.0.1/mrgsolve/tests/testthat/nm/1005-ext.cpp | 1 mrgsolve-2.0.1/mrgsolve/tests/testthat/nm/1005-omega-skip.mod | 1 mrgsolve-2.0.1/mrgsolve/tests/testthat/nm/1005-path-ext.mod | 2 mrgsolve-2.0.1/mrgsolve/tests/testthat/nm/1005-path-xml.mod | 2 mrgsolve-2.0.1/mrgsolve/tests/testthat/nm/1005-xml.cpp | 1 mrgsolve-2.0.1/mrgsolve/tests/testthat/nm/cppstem-nmext/1005.cpp | 1 mrgsolve-2.0.1/mrgsolve/tests/testthat/nm/cppstem-nmxml/1005.cpp | 1 mrgsolve-2.0.1/mrgsolve/tests/testthat/test-carry_out.R | 4 mrgsolve-2.0.1/mrgsolve/tests/testthat/test-data_set.R | 40 mrgsolve-2.0.1/mrgsolve/tests/testthat/test-dplyr-generics.R | 8 mrgsolve-2.0.1/mrgsolve/tests/testthat/test-env.R | 79 mrgsolve-2.0.1/mrgsolve/tests/testthat/test-idata_set.R | 23 mrgsolve-2.0.1/mrgsolve/tests/testthat/test-inventory-too.R | 9 mrgsolve-2.0.1/mrgsolve/tests/testthat/test-modspec.R | 892 ++++++++-- mrgsolve-2.0.1/mrgsolve/tests/testthat/test-mrgsims.R | 71 mrgsolve-2.0.1/mrgsolve/tests/testthat/test-tolerances.R | 23 119 files changed, 3726 insertions(+), 2248 deletions(-)
Title: Read and Write General Transit Feed Specification (GTFS) Files
Description: Tools for the development of packages related to General
Transit Feed Specification (GTFS) files. Establishes a standard for
representing GTFS feeds using R data types. Provides fast and flexible
functions to read and write GTFS feeds while sticking to this
standard. Defines a basic 'gtfs' class which is meant to be extended
by packages that depend on it. And offers utility functions that
support checking the structure of GTFS objects.
Author: Daniel Herszenhut [aut] ,
Flavio Poletti [aut, cre],
Mark Padgham [aut],
Rafael H. M. Pereira [rev] ,
Tom Buckley [rev],
Ipea - Institute for Applied Economic Research [cph, fnd]
Maintainer: Flavio Poletti <flavio.poletti@hotmail.ch>
Diff between gtfsio versions 1.2.0 dated 2024-10-11 and 1.2.1 dated 2026-05-20
DESCRIPTION | 24 LICENSE | 4 MD5 | 115 +- NAMESPACE | 38 NEWS.md | 166 +-- R/assert_gtfs.R | 232 ++-- R/assert_inputs.R | 560 +++++------ R/checks.R | 517 +++++------ R/data.R | 104 +- R/export_gtfs.R | 486 +++++----- R/get_gtfs_standards.R | 793 ++++++++-------- R/gtfs_methods.R | 100 +- R/gtfs_subset.R | 70 - R/gtfsio.R | 34 R/gtfsio_error.R | 109 +- R/import_gtfs.R | 931 ++++++++++--------- R/new_gtfs.R | 132 +- R/utils.R | 62 - README.md | 200 ++-- build/vignette.rds |binary data/gtfs_reference.rda |binary inst/doc/gtfsio.R | 258 ++--- inst/doc/gtfsio.Rmd | 406 ++++---- inst/doc/gtfsio.html | 1313 ++++++++++++++-------------- inst/extdata/blank_lines.zip |only inst/extdata/subdirectories.zip |only inst/reference/create_gtfs_reference_data.R | 211 ++-- inst/reference/gtfs-reference-str.txt |only inst/reference/parse_markdown.R | 211 ++-- inst/tinytest/test_assert_gtfs.R | 178 +-- inst/tinytest/test_assert_inputs.R | 374 +++---- inst/tinytest/test_checks.R | 762 ++++++++-------- inst/tinytest/test_export_gtfs.R | 632 ++++++------- inst/tinytest/test_gtfsio_error.R | 172 +-- inst/tinytest/test_import_gtfs.R | 892 +++++++++---------- inst/tinytest/test_new_gtfs.R | 126 +- inst/tinytest/test_print.R | 66 - inst/tinytest/test_subset.R | 44 inst/tinytest/test_summary.R | 58 - man/assert_gtfs.Rd | 74 - man/assert_vector.Rd | 114 +- man/check_field_class.Rd | 114 +- man/check_field_exists.Rd | 88 - man/check_file_exists.Rd | 82 - man/export_gtfs.Rd | 146 +-- man/get_gtfs_standards.Rd | 83 - man/gtfs_reference.Rd | 131 +- man/gtfsio-package.Rd | 84 - man/gtfsio_error.Rd | 51 - man/import_gtfs.Rd | 182 +-- man/new_gtfs.Rd | 122 +- man/parent_function_error.Rd | 51 - man/print.gtfs.Rd | 58 - man/read_files.Rd | 78 - man/read_geojson.Rd | 33 man/sub-.gtfs.Rd | 72 - man/summary.gtfs.Rd | 49 - man/translate_types.Rd | 46 tests/tinytest.R | 12 vignettes/gtfsio.Rmd | 406 ++++---- 60 files changed, 6235 insertions(+), 6221 deletions(-)
Title: Fusing Machine Learning in R
Description: Recent technological advances have enable the simultaneous collection
of multi-omics data i.e., different types or modalities of molecular data,
presenting challenges for integrative prediction modeling due to the heterogeneous,
high-dimensional nature and possible missing modalities of some individuals.
We introduce this package for late integrative prediction modeling, enabling
modality-specific variable selection and prediction modeling, followed by the
aggregation of the modality-specific predictions to train a final meta-model.
This package facilitates conducting late integration predictive modeling in a
systematic, structured, and reproducible way.
Author: Cesaire J. K. Fouodo [aut, cre],
Marina Bleskina [ctb]
Maintainer: Cesaire J. K. Fouodo <cesaire.joris.kuete.fouodo@emory.edu>
This is a re-admission after prior archival of version 0.0.2 dated 2025-10-13
Diff between fuseMLR versions 0.0.2 dated 2025-10-13 and 0.0.4 dated 2026-05-20
DESCRIPTION | 19 ++-- MD5 | 22 ++-- R/Training.R | 7 + README.md | 2 inst/doc/fuseMLR.R | 12 +- inst/doc/fuseMLR.Rmd | 14 ++- inst/doc/fuseMLR.html | 182 ++++++++++++++++++----------------------- man/createTrainMetaLayer.Rd | 2 man/varSelection.Rd | 2 tests/testthat/test-Training.R | 3 tests/testthat/test-VarSel.R | 6 - vignettes/fuseMLR.Rmd | 14 ++- 12 files changed, 146 insertions(+), 139 deletions(-)
Title: Complexity Measures for Supervised Problems
Description: Provides measures to characterize the complexity of classification
and regression problems based on aspects that quantify the linearity of the
data, the presence of informative feature, the sparsity and dimensionality
of the datasets. This package provides bug fixes, generalizations and
implementations of many state of the art measures. The measures are
described in the papers: Lorena et al. (2019) <doi:10.1145/3347711> and
Lorena et al. (2018) <doi:10.1007/s10994-017-5681-1>.
Author: Luis Garcia [aut, cre],
Ana Lorena [aut, ctb],
Marcilio Souto [aut, ctb],
Tin K. Ho [aut, ctb]
Maintainer: Luis Garcia <luis.garcia@unb.br>
Diff between ECoL versions 0.3.0 dated 2019-11-05 and 0.4.4 dated 2026-05-20
ECoL-0.3.0/ECoL/R/overlapping.R |only ECoL-0.3.0/ECoL/man/overlapping.Rd |only ECoL-0.3.0/ECoL/tests/testthat/test_overlapping.R |only ECoL-0.4.4/ECoL/DESCRIPTION | 32 ++++++++--- ECoL-0.4.4/ECoL/LICENSE | 4 - ECoL-0.4.4/ECoL/MD5 | 56 ++++++++++---------- ECoL-0.4.4/ECoL/NAMESPACE | 6 +- ECoL-0.4.4/ECoL/R/balance.R | 14 ++--- ECoL-0.4.4/ECoL/R/complexity.R | 6 +- ECoL-0.4.4/ECoL/R/correlation.R | 16 +++-- ECoL-0.4.4/ECoL/R/dimensionality.R | 16 ++--- ECoL-0.4.4/ECoL/R/feature-based.R |only ECoL-0.4.4/ECoL/R/internal.R | 12 ++-- ECoL-0.4.4/ECoL/R/linearity.R | 37 ++++++------- ECoL-0.4.4/ECoL/R/neighborhood.R | 39 ++++++------- ECoL-0.4.4/ECoL/R/network.R | 18 +++--- ECoL-0.4.4/ECoL/R/smoothness.R | 17 ++---- ECoL-0.4.4/ECoL/man/balance.Rd | 16 +++-- ECoL-0.4.4/ECoL/man/complexity.Rd | 10 +-- ECoL-0.4.4/ECoL/man/correlation.Rd | 22 ++++--- ECoL-0.4.4/ECoL/man/dimensionality.Rd | 18 +++--- ECoL-0.4.4/ECoL/man/featurebased.Rd |only ECoL-0.4.4/ECoL/man/linearity.Rd | 18 +++--- ECoL-0.4.4/ECoL/man/neighborhood.Rd | 24 ++++---- ECoL-0.4.4/ECoL/man/network.Rd | 31 +++++++---- ECoL-0.4.4/ECoL/man/smoothness.Rd | 18 +++--- ECoL-0.4.4/ECoL/tests/testthat/test_balance.R | 24 ++++---- ECoL-0.4.4/ECoL/tests/testthat/test_feature-based.R |only ECoL-0.4.4/ECoL/tests/testthat/test_linearity.R | 6 +- ECoL-0.4.4/ECoL/tests/testthat/test_neighborhood.R | 9 +-- ECoL-0.4.4/ECoL/tests/testthat/test_network.R | 12 ++-- ECoL-0.4.4/ECoL/tests/testthat/test_smoothness.R | 8 +- 32 files changed, 260 insertions(+), 229 deletions(-)
Title: R Toolkit for 'Databricks'
Description: Collection of utilities that improve using 'Databricks' from
R. Primarily functions that wrap specific 'Databricks' APIs
(<https://docs.databricks.com/api>), 'RStudio' connection pane
support, quality of life functions to make 'Databricks' simpler to
use.
Author: Zac Davies [aut, cre],
Rafi Kurlansik [aut],
Databricks [cph, fnd]
Maintainer: Zac Davies <zac@databricks.com>
Diff between brickster versions 0.2.12 dated 2026-02-04 and 0.2.13 dated 2026-05-20
brickster-0.2.12/brickster/man/db_generate_values_sql.Rd |only brickster-0.2.12/brickster/tests/testthat/test-dbfs.R |only brickster-0.2.13/brickster/DESCRIPTION | 10 brickster-0.2.13/brickster/MD5 | 409 +++++----- brickster-0.2.13/brickster/NAMESPACE | 19 brickster-0.2.13/brickster/NEWS.md | 12 brickster-0.2.13/brickster/R/clusters.R | 264 ++++++ brickster-0.2.13/brickster/R/connection-pane.R | 11 brickster-0.2.13/brickster/R/data-structures.R | 86 +- brickster-0.2.13/brickster/R/databricks-dbi.R | 297 ++++--- brickster-0.2.13/brickster/R/databricks-dbplyr.R | 19 brickster-0.2.13/brickster/R/dbfs.R | 124 ++- brickster-0.2.13/brickster/R/execution-context.R | 9 brickster-0.2.13/brickster/R/jobs.R | 100 ++ brickster-0.2.13/brickster/R/libraries.R | 4 brickster-0.2.13/brickster/R/misc-helpers.R | 11 brickster-0.2.13/brickster/R/mlflow-databricks.R | 10 brickster-0.2.13/brickster/R/notebook-helpers.R | 2 brickster-0.2.13/brickster/R/package-auth.R | 345 +++++++- brickster-0.2.13/brickster/R/queries.R | 7 brickster-0.2.13/brickster/R/query-history.R | 1 brickster-0.2.13/brickster/R/remote-repl.R | 5 brickster-0.2.13/brickster/R/repos.R | 5 brickster-0.2.13/brickster/R/request-helpers.R | 25 brickster-0.2.13/brickster/R/secrets.R | 10 brickster-0.2.13/brickster/R/sql-query-execution.R | 6 brickster-0.2.13/brickster/R/vector-search.R | 14 brickster-0.2.13/brickster/R/volume-fs.R | 161 +++ brickster-0.2.13/brickster/R/warehouses.R | 167 ++++ brickster-0.2.13/brickster/R/workspaces.R | 10 brickster-0.2.13/brickster/README.md | 2 brickster-0.2.13/brickster/build/vignette.rds |binary brickster-0.2.13/brickster/inst/doc/cluster-management.html | 5 brickster-0.2.13/brickster/inst/doc/managing-jobs.html | 5 brickster-0.2.13/brickster/inst/doc/remote-repl.html | 5 brickster-0.2.13/brickster/inst/doc/setup-auth.Rmd | 27 brickster-0.2.13/brickster/inst/doc/setup-auth.html | 97 +- brickster-0.2.13/brickster/inst/doc/sql-backend.html | 5 brickster-0.2.13/brickster/inst/doc/working-with-volumes.R |only brickster-0.2.13/brickster/inst/doc/working-with-volumes.Rmd |only brickster-0.2.13/brickster/inst/doc/working-with-volumes.html |only brickster-0.2.13/brickster/man/auth_params.Rd |only brickster-0.2.13/brickster/man/dbConnect-DatabricksDriver-method.Rd | 5 brickster-0.2.13/brickster/man/dbGetQuery-DatabricksConnection-character-method.Rd | 6 brickster-0.2.13/brickster/man/dbSendQuery-DatabricksConnection-character-method.Rd | 5 brickster-0.2.13/brickster/man/dbWriteTable-DatabricksConnection-AsIs-data.frame-method.Rd | 6 brickster-0.2.13/brickster/man/dbWriteTable-DatabricksConnection-Id-data.frame-method.Rd | 6 brickster-0.2.13/brickster/man/dbWriteTable-DatabricksConnection-character-data.frame-method.Rd | 6 brickster-0.2.13/brickster/man/db_cluster_create.Rd | 3 brickster-0.2.13/brickster/man/db_cluster_delete.Rd | 3 brickster-0.2.13/brickster/man/db_cluster_edit.Rd | 3 brickster-0.2.13/brickster/man/db_cluster_events.Rd | 3 brickster-0.2.13/brickster/man/db_cluster_get.Rd | 4 brickster-0.2.13/brickster/man/db_cluster_list.Rd | 5 brickster-0.2.13/brickster/man/db_cluster_list_node_types.Rd | 3 brickster-0.2.13/brickster/man/db_cluster_list_zones.Rd | 3 brickster-0.2.13/brickster/man/db_cluster_perm_delete.Rd | 3 brickster-0.2.13/brickster/man/db_cluster_pin.Rd | 3 brickster-0.2.13/brickster/man/db_cluster_resize.Rd | 3 brickster-0.2.13/brickster/man/db_cluster_restart.Rd | 3 brickster-0.2.13/brickster/man/db_cluster_runtime_versions.Rd | 3 brickster-0.2.13/brickster/man/db_cluster_start.Rd | 3 brickster-0.2.13/brickster/man/db_cluster_terminate.Rd | 3 brickster-0.2.13/brickster/man/db_cluster_unpin.Rd | 3 brickster-0.2.13/brickster/man/db_context_command_cancel.Rd | 3 brickster-0.2.13/brickster/man/db_context_command_run.Rd | 3 brickster-0.2.13/brickster/man/db_context_command_run_and_wait.Rd | 3 brickster-0.2.13/brickster/man/db_context_command_status.Rd | 3 brickster-0.2.13/brickster/man/db_context_create.Rd | 3 brickster-0.2.13/brickster/man/db_context_destroy.Rd | 3 brickster-0.2.13/brickster/man/db_context_manager.Rd | 11 brickster-0.2.13/brickster/man/db_context_status.Rd | 3 brickster-0.2.13/brickster/man/db_dbfs_add_block.Rd | 4 brickster-0.2.13/brickster/man/db_dbfs_close.Rd | 5 brickster-0.2.13/brickster/man/db_dbfs_create.Rd | 5 brickster-0.2.13/brickster/man/db_dbfs_delete.Rd | 3 brickster-0.2.13/brickster/man/db_dbfs_get_status.Rd | 4 brickster-0.2.13/brickster/man/db_dbfs_list.Rd | 5 brickster-0.2.13/brickster/man/db_dbfs_mkdirs.Rd | 6 brickster-0.2.13/brickster/man/db_dbfs_move.Rd | 5 brickster-0.2.13/brickster/man/db_dbfs_put.Rd | 5 brickster-0.2.13/brickster/man/db_dbfs_read.Rd | 5 brickster-0.2.13/brickster/man/db_jobs_create.Rd | 3 brickster-0.2.13/brickster/man/db_jobs_delete.Rd | 3 brickster-0.2.13/brickster/man/db_jobs_get.Rd | 4 brickster-0.2.13/brickster/man/db_jobs_list.Rd | 5 brickster-0.2.13/brickster/man/db_jobs_repair_run.Rd | 3 brickster-0.2.13/brickster/man/db_jobs_reset.Rd | 3 brickster-0.2.13/brickster/man/db_jobs_run_now.Rd | 3 brickster-0.2.13/brickster/man/db_jobs_runs_cancel.Rd | 3 brickster-0.2.13/brickster/man/db_jobs_runs_delete.Rd | 3 brickster-0.2.13/brickster/man/db_jobs_runs_export.Rd | 3 brickster-0.2.13/brickster/man/db_jobs_runs_get.Rd | 3 brickster-0.2.13/brickster/man/db_jobs_runs_get_output.Rd | 3 brickster-0.2.13/brickster/man/db_jobs_runs_list.Rd | 3 brickster-0.2.13/brickster/man/db_jobs_runs_submit.Rd | 3 brickster-0.2.13/brickster/man/db_jobs_update.Rd | 3 brickster-0.2.13/brickster/man/db_libs_all_cluster_statuses.Rd | 3 brickster-0.2.13/brickster/man/db_libs_cluster_status.Rd | 3 brickster-0.2.13/brickster/man/db_libs_install.Rd | 3 brickster-0.2.13/brickster/man/db_libs_uninstall.Rd | 3 brickster-0.2.13/brickster/man/db_mlflow_model_approve_transition_req.Rd | 3 brickster-0.2.13/brickster/man/db_mlflow_model_delete_transition_req.Rd | 3 brickster-0.2.13/brickster/man/db_mlflow_model_open_transition_reqs.Rd | 3 brickster-0.2.13/brickster/man/db_mlflow_model_reject_transition_req.Rd | 3 brickster-0.2.13/brickster/man/db_mlflow_model_transition_req.Rd | 3 brickster-0.2.13/brickster/man/db_mlflow_model_transition_stage.Rd | 3 brickster-0.2.13/brickster/man/db_mlflow_model_version_comment.Rd | 3 brickster-0.2.13/brickster/man/db_mlflow_model_version_comment_delete.Rd | 3 brickster-0.2.13/brickster/man/db_mlflow_model_version_comment_edit.Rd | 3 brickster-0.2.13/brickster/man/db_mlflow_registered_model_details.Rd | 3 brickster-0.2.13/brickster/man/db_oauth_client.Rd | 22 brickster-0.2.13/brickster/man/db_perform_request.Rd | 1 brickster-0.2.13/brickster/man/db_perform_response.Rd |only brickster-0.2.13/brickster/man/db_query_create.Rd | 3 brickster-0.2.13/brickster/man/db_query_delete.Rd | 3 brickster-0.2.13/brickster/man/db_query_get.Rd | 3 brickster-0.2.13/brickster/man/db_query_list.Rd | 3 brickster-0.2.13/brickster/man/db_query_update.Rd | 3 brickster-0.2.13/brickster/man/db_repl.Rd | 3 brickster-0.2.13/brickster/man/db_repo_create.Rd | 3 brickster-0.2.13/brickster/man/db_repo_delete.Rd | 3 brickster-0.2.13/brickster/man/db_repo_get.Rd | 3 brickster-0.2.13/brickster/man/db_repo_get_all.Rd | 3 brickster-0.2.13/brickster/man/db_repo_update.Rd | 3 brickster-0.2.13/brickster/man/db_req_error_body.Rd | 1 brickster-0.2.13/brickster/man/db_request.Rd | 1 brickster-0.2.13/brickster/man/db_request_json.Rd | 1 brickster-0.2.13/brickster/man/db_secrets_delete.Rd | 3 brickster-0.2.13/brickster/man/db_secrets_list.Rd | 3 brickster-0.2.13/brickster/man/db_secrets_put.Rd | 3 brickster-0.2.13/brickster/man/db_secrets_scope_acl_delete.Rd | 3 brickster-0.2.13/brickster/man/db_secrets_scope_acl_get.Rd | 3 brickster-0.2.13/brickster/man/db_secrets_scope_acl_list.Rd | 3 brickster-0.2.13/brickster/man/db_secrets_scope_acl_put.Rd | 3 brickster-0.2.13/brickster/man/db_secrets_scope_create.Rd | 3 brickster-0.2.13/brickster/man/db_secrets_scope_delete.Rd | 3 brickster-0.2.13/brickster/man/db_secrets_scope_list_all.Rd | 3 brickster-0.2.13/brickster/man/db_sql_exec_cancel.Rd | 3 brickster-0.2.13/brickster/man/db_sql_exec_query.Rd | 3 brickster-0.2.13/brickster/man/db_sql_exec_result.Rd | 3 brickster-0.2.13/brickster/man/db_sql_exec_status.Rd | 3 brickster-0.2.13/brickster/man/db_sql_global_warehouse_get.Rd | 3 brickster-0.2.13/brickster/man/db_sql_query_history.Rd | 3 brickster-0.2.13/brickster/man/db_sql_warehouse_create.Rd | 3 brickster-0.2.13/brickster/man/db_sql_warehouse_delete.Rd | 3 brickster-0.2.13/brickster/man/db_sql_warehouse_edit.Rd | 3 brickster-0.2.13/brickster/man/db_sql_warehouse_get.Rd | 4 brickster-0.2.13/brickster/man/db_sql_warehouse_list.Rd | 5 brickster-0.2.13/brickster/man/db_sql_warehouse_start.Rd | 3 brickster-0.2.13/brickster/man/db_sql_warehouse_stop.Rd | 3 brickster-0.2.13/brickster/man/db_volume_delete.Rd | 4 brickster-0.2.13/brickster/man/db_volume_dir_create.Rd | 4 brickster-0.2.13/brickster/man/db_volume_dir_delete.Rd | 4 brickster-0.2.13/brickster/man/db_volume_dir_exists.Rd | 4 brickster-0.2.13/brickster/man/db_volume_download_dir.Rd |only brickster-0.2.13/brickster/man/db_volume_file_exists.Rd | 4 brickster-0.2.13/brickster/man/db_volume_list.Rd | 4 brickster-0.2.13/brickster/man/db_volume_list_files_recursive.Rd |only brickster-0.2.13/brickster/man/db_volume_read.Rd | 4 brickster-0.2.13/brickster/man/db_volume_upload_dir.Rd | 6 brickster-0.2.13/brickster/man/db_volume_write.Rd | 4 brickster-0.2.13/brickster/man/db_vs_endpoints_create.Rd | 3 brickster-0.2.13/brickster/man/db_vs_endpoints_delete.Rd | 3 brickster-0.2.13/brickster/man/db_vs_endpoints_get.Rd | 3 brickster-0.2.13/brickster/man/db_vs_endpoints_list.Rd | 3 brickster-0.2.13/brickster/man/db_vs_indexes_create.Rd | 3 brickster-0.2.13/brickster/man/db_vs_indexes_delete.Rd | 3 brickster-0.2.13/brickster/man/db_vs_indexes_delete_data.Rd | 3 brickster-0.2.13/brickster/man/db_vs_indexes_get.Rd | 3 brickster-0.2.13/brickster/man/db_vs_indexes_list.Rd | 3 brickster-0.2.13/brickster/man/db_vs_indexes_query.Rd | 3 brickster-0.2.13/brickster/man/db_vs_indexes_query_next_page.Rd | 3 brickster-0.2.13/brickster/man/db_vs_indexes_scan.Rd | 3 brickster-0.2.13/brickster/man/db_vs_indexes_sync.Rd | 3 brickster-0.2.13/brickster/man/db_vs_indexes_upsert_data.Rd | 3 brickster-0.2.13/brickster/man/db_workspace_delete.Rd | 3 brickster-0.2.13/brickster/man/db_workspace_get_status.Rd | 3 brickster-0.2.13/brickster/man/db_workspace_import.Rd | 3 brickster-0.2.13/brickster/man/db_workspace_list.Rd | 3 brickster-0.2.13/brickster/man/db_workspace_mkdirs.Rd | 3 brickster-0.2.13/brickster/man/db_write_table_volume.Rd | 2 brickster-0.2.13/brickster/man/read_databrickscfg.Rd | 6 brickster-0.2.13/brickster/man/read_env_var.Rd | 6 brickster-0.2.13/brickster/tests/testthat/test-auth.R | 197 ++++ brickster-0.2.13/brickster/tests/testthat/test-clusters-offline-helpers.R |only brickster-0.2.13/brickster/tests/testthat/test-clusters.R | 38 brickster-0.2.13/brickster/tests/testthat/test-connection-pane-offline.R |only brickster-0.2.13/brickster/tests/testthat/test-connection-pane.R | 2 brickster-0.2.13/brickster/tests/testthat/test-databricks-dbi-offline-helpers.R |only brickster-0.2.13/brickster/tests/testthat/test-databricks-dbi.R | 30 brickster-0.2.13/brickster/tests/testthat/test-databricks-dbplyr-offline-helpers.R |only brickster-0.2.13/brickster/tests/testthat/test-execution-contexts-offline-helpers.R |only brickster-0.2.13/brickster/tests/testthat/test-execution-contexts.R | 18 brickster-0.2.13/brickster/tests/testthat/test-jobs-offline-helpers.R |only brickster-0.2.13/brickster/tests/testthat/test-jobs.R | 2 brickster-0.2.13/brickster/tests/testthat/test-libraries.R | 14 brickster-0.2.13/brickster/tests/testthat/test-misc-helpers.R | 4 brickster-0.2.13/brickster/tests/testthat/test-mlflow-dbrx.R | 26 brickster-0.2.13/brickster/tests/testthat/test-repl.R | 2 brickster-0.2.13/brickster/tests/testthat/test-request-helpers.R | 65 + brickster-0.2.13/brickster/tests/testthat/test-secrets.R | 18 brickster-0.2.13/brickster/tests/testthat/test-sql-execution-helpers-offline.R |only brickster-0.2.13/brickster/tests/testthat/test-uc-catalogs.R | 4 brickster-0.2.13/brickster/tests/testthat/test-uc-schemas.R | 4 brickster-0.2.13/brickster/tests/testthat/test-uc-tables.R | 10 brickster-0.2.13/brickster/tests/testthat/test-uc-volumes.R | 12 brickster-0.2.13/brickster/tests/testthat/test-unity-catalog.R | 26 brickster-0.2.13/brickster/tests/testthat/test-volumes-fs-offline-helpers.R |only brickster-0.2.13/brickster/tests/testthat/test-volumes-fs.R | 58 + brickster-0.2.13/brickster/tests/testthat/test-warehouses-offline-helpers.R |only brickster-0.2.13/brickster/tests/testthat/test-warehouses.R | 16 brickster-0.2.13/brickster/tests/testthat/test-workspace-folder.R | 16 brickster-0.2.13/brickster/vignettes/setup-auth.Rmd | 27 brickster-0.2.13/brickster/vignettes/working-with-volumes.Rmd |only 215 files changed, 2639 insertions(+), 733 deletions(-)
Title: A Unified Framework for Identification and Ecological
Interpretation of Microbial Data from Bioenergy Research
Centers
Description: A unified framework for identification and ecological interpretation of core microbiomes across time and space, enhancing robustness and reproducibility in microbiome data analysis. 'BRCore' implements the workflow proposed by Shade and Stopnisek (2019) and incorporates additional rarefaction steps. The proposed workflow aims to identify persistent microbiomes using abundance-occupancy distributions and neutral community model fitting. For more details on abundance-occupancy distributions see Shade A, Stopnisek N (2019) <doi:10.1016/j.mib.2019.09.008>, for neutral models, see Sloan et al. (2006) <doi:10.1111/j.1462-2920.2005.00956.x> and Burns et al. (2015) <doi:10.1038/ismej.2015.142>.
Author: Bolivar Aponte Rolon [aut, cre] ,
Gian Maria Niccolo Benucci [aut] ,
Brandon Kristy [aut] ,
Ashley Shade [aut] ,
Nejc Stopnisek [aut] ,
Adina Howe [aut] ,
Center for Advanced Bioenergy and Bioproducts Innovation [cph, fnd],
Great Lakes Bioenergy Rese [...truncated...]
Maintainer: Bolivar Aponte Rolon <bolaponte@pm.me>
Diff between BRCore versions 2.0.5 dated 2026-05-18 and 2.0.7 dated 2026-05-20
DESCRIPTION | 19 ++++++++++--------- MD5 | 8 ++++---- NEWS.md | 23 ++++++++++++++--------- README.md | 12 +++++++++--- tests/testthat/setup.R | 12 +++++++++++- 5 files changed, 48 insertions(+), 26 deletions(-)
Title: Bayesian Estimation and Forecasting of Age-Specific Rates
Description: Fast Bayesian estimation and forecasting of age-specific
rates, probabilities, and means, based on 'Template Model Builder'.
Author: John Bryant [aut, cre],
Junni Zhang [aut],
Bayesian Demography Limited [cph]
Maintainer: John Bryant <john@bayesiandemography.com>
Diff between bage versions 0.10.8 dated 2026-02-22 and 0.10.9 dated 2026-05-20
bage-0.10.8/bage/tests/testthat/manual-checks.R |only bage-0.10.8/bage/tests/testthat/test-simulation-studies.R |only bage-0.10.9/bage/DESCRIPTION | 8 bage-0.10.9/bage/MD5 | 130 - bage-0.10.9/bage/NAMESPACE | 54 bage-0.10.9/bage/NEWS.md | 34 bage-0.10.9/bage/R/accessor-functions.R | 59 bage-0.10.9/bage/R/bage-package.R | 18 bage-0.10.9/bage/R/bage_mod-methods.R | 13 bage-0.10.9/bage/R/bage_prior-constructors.R | 471 +++- bage-0.10.9/bage/R/bage_prior-methods.R | 917 ++++++-- bage-0.10.9/bage/R/check-functions.R | 2 bage-0.10.9/bage/R/fit.R | 4 bage-0.10.9/bage/R/forecast.R | 92 bage-0.10.9/bage/R/make-inputs.R | 65 bage-0.10.9/bage/R/make-outputs.R | 283 -- bage-0.10.9/bage/R/priors.R | 2 bage-0.10.9/bage/R/sim.R | 78 bage-0.10.9/bage/R/util.R | 541 ++-- bage-0.10.9/bage/README.md | 20 bage-0.10.9/bage/build/vignette.rds |binary bage-0.10.9/bage/inst/Matrix-version | 2 bage-0.10.9/bage/inst/TMB-version | 2 bage-0.10.9/bage/inst/doc/vig01_intro.html | 128 - bage-0.10.9/bage/man/AR.Rd | 20 bage-0.10.9/bage/man/AR1.Rd | 18 bage-0.10.9/bage/man/DRW.Rd | 17 bage-0.10.9/bage/man/DRW2.Rd | 19 bage-0.10.9/bage/man/Lin.Rd | 13 bage-0.10.9/bage/man/Lin_AR.Rd | 33 bage-0.10.9/bage/man/Lin_AR1.Rd | 39 bage-0.10.9/bage/man/RW.Rd | 13 bage-0.10.9/bage/man/RW2.Rd | 13 bage-0.10.9/bage/man/RW2_AR.Rd |only bage-0.10.9/bage/man/RW2_AR1.Rd |only bage-0.10.9/bage/man/RW2_Infant.Rd | 13 bage-0.10.9/bage/man/RW2_Seas.Rd | 13 bage-0.10.9/bage/man/RW_Seas.Rd | 13 bage-0.10.9/bage/man/SVD_AR.Rd | 10 bage-0.10.9/bage/man/Sp.Rd | 13 bage-0.10.9/bage/man/bage-package.Rd | 12 bage-0.10.9/bage/man/forecast.bage_mod.Rd | 2 bage-0.10.9/bage/man/generate.bage_prior_ar.Rd | 6 bage-0.10.9/bage/man/priors.Rd | 2 bage-0.10.9/bage/man/reexports.Rd | 2 bage-0.10.9/bage/man/set_covariates.Rd | 2 bage-0.10.9/bage/src/bage.cpp | 137 - bage-0.10.9/bage/tests/README.md |only bage-0.10.9/bage/tests/plots |only bage-0.10.9/bage/tests/simulation |only bage-0.10.9/bage/tests/testthat.R | 14 bage-0.10.9/bage/tests/testthat/_snaps/bage_prior-methods.md | 122 + bage-0.10.9/bage/tests/testthat/test-accessor-functions.R | 57 bage-0.10.9/bage/tests/testthat/test-all-models.R | 7 bage-0.10.9/bage/tests/testthat/test-all-priors.R | 88 bage-0.10.9/bage/tests/testthat/test-bage_prior-constructors.R | 161 + bage-0.10.9/bage/tests/testthat/test-bage_prior-methods.R | 1119 ++++++---- bage-0.10.9/bage/tests/testthat/test-forecast.R | 121 + bage-0.10.9/bage/tests/testthat/test-make-inputs.R | 76 bage-0.10.9/bage/tests/testthat/test-make-outputs.R | 131 - bage-0.10.9/bage/tests/testthat/test-sim.R | 67 bage-0.10.9/bage/tests/testthat/test-util.R | 18 bage-0.10.9/bage/tests/valgrind |only bage-0.10.9/bage/vignettes/articles/vig02_math.Rmd | 573 ++--- bage-0.10.9/bage/vignettes/articles/vig03_priors.Rmd | 454 ++-- bage-0.10.9/bage/vignettes/articles/vig09_covariates.Rmd | 35 66 files changed, 4310 insertions(+), 2066 deletions(-)
Title: An 'Armadillo' Interface
Description: Provides function declarations and inline function definitions that
facilitate communication between R and the 'Armadillo' 'C++' library for
linear algebra and scientific computing. This implementation is derived
from Vargas Sepulveda and Schneider Malamud (2024)
<doi:10.1016/j.softx.2025.102087>.
Author: Mauricio Vargas Sepulveda [aut, cre] ,
Jonathan Schneider Malamud [ctb],
Conrad Sanderson [aut] )
Maintainer: Mauricio Vargas Sepulveda <m.vargas.sepulveda@gmail.com>
Diff between armadillo4r versions 0.8.0 dated 2026-04-08 and 0.9.0 dated 2026-05-20
DESCRIPTION | 10 MD5 | 138 +- NEWS.md | 13 R/template.R | 5 R/version.R | 23 README.md | 6 build/partial.rdb |binary inst/extdata/src/Makevars.in | 4 inst/include/armadillo4r.hpp | 27 inst/include/armadillo4r/armadillo.hpp | 5 inst/include/armadillo4r/armadillo/BaseCube_meat.hpp | 54 inst/include/armadillo4r/armadillo/Base_meat.hpp | 70 - inst/include/armadillo4r/armadillo/Col_meat.hpp | 4 inst/include/armadillo4r/armadillo/Cube_bones.hpp | 3 inst/include/armadillo4r/armadillo/Cube_meat.hpp | 79 - inst/include/armadillo4r/armadillo/Mat_meat.hpp | 180 +-- inst/include/armadillo4r/armadillo/Row_meat.hpp | 4 inst/include/armadillo4r/armadillo/SpBase_meat.hpp | 8 inst/include/armadillo4r/armadillo/SpMat_meat.hpp | 140 +- inst/include/armadillo4r/armadillo/SpSubview_meat.hpp | 47 inst/include/armadillo4r/armadillo/arma_forward.hpp | 3 inst/include/armadillo4r/armadillo/arma_rng.hpp | 85 + inst/include/armadillo4r/armadillo/arma_version.hpp | 2 inst/include/armadillo4r/armadillo/arrayops_meat.hpp | 6 inst/include/armadillo4r/armadillo/config.hpp | 30 inst/include/armadillo4r/armadillo/config.hpp.cmake | 24 inst/include/armadillo4r/armadillo/constants.hpp | 61 - inst/include/armadillo4r/armadillo/diagview_meat.hpp | 114 + inst/include/armadillo4r/armadillo/diskio_meat.hpp | 38 inst/include/armadillo4r/armadillo/fill.hpp | 31 inst/include/armadillo4r/armadillo/fn_approx_equal.hpp | 14 inst/include/armadillo4r/armadillo/fn_clamp.hpp | 6 inst/include/armadillo4r/armadillo/fn_rande.hpp | 8 inst/include/armadillo4r/armadillo/fn_randg.hpp | 8 inst/include/armadillo4r/armadillo/fn_randi.hpp | 8 inst/include/armadillo4r/armadillo/fn_randn.hpp | 16 inst/include/armadillo4r/armadillo/fn_randu.hpp | 16 inst/include/armadillo4r/armadillo/fn_spsolve.hpp | 6 inst/include/armadillo4r/armadillo/fn_svds.hpp | 4 inst/include/armadillo4r/armadillo/glue_solve_meat.hpp | 6 inst/include/armadillo4r/armadillo/gmm_diag_meat.hpp | 6 inst/include/armadillo4r/armadillo/gmm_full_meat.hpp | 6 inst/include/armadillo4r/armadillo/newarp_SparseGenRealShiftSolve_meat.hpp | 4 inst/include/armadillo4r/armadillo/op_accu_meat.hpp | 8 inst/include/armadillo4r/armadillo/op_clamp_meat.hpp | 22 inst/include/armadillo4r/armadillo/op_expmat_meat.hpp | 2 inst/include/armadillo4r/armadillo/op_htrans_meat.hpp | 1 inst/include/armadillo4r/armadillo/op_mean_bones.hpp | 6 inst/include/armadillo4r/armadillo/op_mean_meat.hpp | 175 ++- inst/include/armadillo4r/armadillo/op_norm2est_meat.hpp | 8 inst/include/armadillo4r/armadillo/op_orth_null_meat.hpp | 8 inst/include/armadillo4r/armadillo/op_pinv_meat.hpp | 8 inst/include/armadillo4r/armadillo/op_rank_meat.hpp | 24 inst/include/armadillo4r/armadillo/op_repmat_meat.hpp | 20 inst/include/armadillo4r/armadillo/op_resize_meat.hpp | 2 inst/include/armadillo4r/armadillo/op_strans_meat.hpp | 1 inst/include/armadillo4r/armadillo/op_vectorise_meat.hpp | 8 inst/include/armadillo4r/armadillo/op_wishrnd_meat.hpp | 4 inst/include/armadillo4r/armadillo/sp_auxlib_meat.hpp | 28 inst/include/armadillo4r/armadillo/spdiagview_meat.hpp | 2 inst/include/armadillo4r/armadillo/subview_bones.hpp | 13 inst/include/armadillo4r/armadillo/subview_cube_each_meat.hpp | 154 +- inst/include/armadillo4r/armadillo/subview_cube_meat.hpp | 84 + inst/include/armadillo4r/armadillo/subview_each_meat.hpp | 278 ++-- inst/include/armadillo4r/armadillo/subview_meat.hpp | 572 +++++++--- inst/include/armadillo4r/armadillo/typedef_elem.hpp | 2 inst/include/armadillo4r/wrappers/sparse_matrices.hpp | 238 ++-- inst/include/update_instructions.md | 18 man/armadillo4r-package.Rd | 3 tests/testthat/test-version.R | 2 70 files changed, 2092 insertions(+), 921 deletions(-)
Title: Publication-Ready Forest Plots with 'ggplot2'
Description: Transform model coefficients into flexible forest
plots using 'ggplot2'. Provides helpers to standardize
coefficient data from a range of modelling workflows and render
publication-ready forest plots with a consistent interface.
Author: Carson Richardson [aut, cre, cph]
Maintainer: Carson Richardson <carson.richardson@outlook.com>
Diff between ggforestplotR versions 0.1.1 dated 2026-04-22 and 0.2.0 dated 2026-05-19
DESCRIPTION | 6 MD5 | 56 - NEWS.md | 17 R/add_forest_table.R | 665 +++++++------ R/add_split_table.R | 835 +++++++++-------- R/as_forest_data.R | 208 ++-- R/ggforestplot.R | 574 ++++++----- R/tidy_forest_model.R | 53 - R/utils.R | 1206 +++++++++++++++---------- README.md | 176 +-- build/vignette.rds |binary inst/doc/ggforestplotR-get-started.R | 25 inst/doc/ggforestplotR-get-started.Rmd | 38 inst/doc/ggforestplotR-get-started.html | 62 - inst/doc/ggforestplotR-plot-customization.R | 34 inst/doc/ggforestplotR-plot-customization.Rmd | 49 - inst/doc/ggforestplotR-plot-customization.html | 258 ++--- man/add_forest_table.Rd | 67 + man/add_split_table.Rd | 50 - man/as_forest_data.Rd | 8 man/ggforestplot.Rd | 41 man/tidy_forest_model.Rd | 14 tests/testthat/Rplots.pdf |binary tests/testthat/test-as_forest_data.R | 44 tests/testthat/test-ggforestplot.R | 474 +++++++++ tests/testthat/test-table-contracts.R | 7 tests/testthat/test-tidy_forest_model.R | 40 vignettes/ggforestplotR-get-started.Rmd | 38 vignettes/ggforestplotR-plot-customization.Rmd | 49 - 29 files changed, 3165 insertions(+), 1929 deletions(-)
Title: Robust Data Analysis Through Monitoring and Dynamic
Visualization
Description: Provides interface to the 'MATLAB' toolbox 'Flexible Statistical Data Analysis
(FSDA)' which is comprehensive and computationally efficient
software package for robust statistics in regression, multivariate
and categorical data analysis. The current R version implements tools
for regression: (forward search, S- and MM-estimation, least trimmed
squares (LTS) and least median of squares (LMS)), for multivariate analysis
(forward search, S- and MM-estimation), for cluster analysis and cluster-wise regression.
The distinctive feature of our package is the possibility of
monitoring the statistics of interest as a function of breakdown point,
efficiency or subset size, depending on the estimator. This is
accompanied by a rich set of graphical features, such as dynamic
brushing, linking, particularly useful for exploratory data analysis.
Author: Valentin Todorov [aut, cre] ,
Emmanuele Sordini [aut],
Aldo Corbellini [ctb],
Francesca Torti [ctb],
Marco Riani [ctb],
Domenico Perrotta [ctb],
Andrea Cerioli [ctb]
Maintainer: Valentin Todorov <valentin.todorov@chello.at>
Diff between fsdaR versions 0.9-0 dated 2023-12-05 and 0.9-1 dated 2026-05-19
ChangeLog | 8 DESCRIPTION | 14 MD5 | 87 ++- NAMESPACE | 4 R/datadoc.R | 14 R/fanplot.R | 113 ----- R/fsmult-methods.R | 3 R/fsrbase.R | 2 R/fsreg-methods.R | 6 R/fsreg.R | 2 R/fsrfan.R | 3 R/normBoxCox.R |only R/normYJ.R |only R/normYJpn.R |only R/resfwdplot.R | 3 R/s3objectsdoc.R | 123 +++++ R/score.R | 5 R/scoreyj.R |only R/scoreyjpn.R |only R/tclust-methods.R | 6 R/tclust.R | 4 R/tclustIC.R | 17 R/tclustICsol.R | 25 - R/tclustreg.R | 124 +++-- R/tclustregIC.R | 324 ++++++++++---- build/partial.rdb |binary build/vignette.rds |binary data/X.rda |binary data/fishery2003.rda |only inst/doc/fsdaR.R | 2 inst/doc/fsdaR.pdf |binary inst/tests/tfsreg.Rout.save | 12 inst/tests/tsomeplots.R | 1 inst/tests/tsomeplots.Rout.save | 43 + inst/tests/ttclust.Rout.save | 875 ++++++++++++++++++++++++++++++++++++++-- man/fanplot.Rd |only man/fishery2003.Rd |only man/loyalty.Rd | 3 man/normBoxCox.Rd |only man/normYJ.Rd |only man/normYJpn.Rd |only man/score.Rd | 5 man/score.object.Rd | 2 man/scoreYJ.Rd |only man/scoreYJ.object.Rd |only man/scoreYJpn.Rd |only man/scoreYJpn.object.Rd |only man/tclustIC.Rd | 23 - man/tclustfsda.object.Rd | 7 man/tclustreg.Rd | 50 +- man/tclustreg.object.Rd | 41 + man/tclustregIC.Rd | 385 +++++++++++------ 52 files changed, 1836 insertions(+), 500 deletions(-)
Title: Analysis of Visual Meteor Data
Description: Provides a suite of analytical functionalities to process and analyze
visual meteor observations from the Visual Meteor Database
of the International Meteor Organization <https://www.imo.net/>.
Author: Janko Richter [aut, cre]
Maintainer: Janko Richter <janko@richtej.de>
Diff between vismeteor versions 3.0.0 dated 2026-05-16 and 3.0.1 dated 2026-05-19
DESCRIPTION | 6 MD5 | 42 +-- NEWS.md | 29 ++ R/load_data.R | 131 ++++++++-- inst/doc/select_knots.R | 17 - inst/doc/select_knots.Rmd | 19 - inst/doc/select_knots.html | 65 ++-- inst/doc/vismeteor.R | 3 inst/doc/vismeteor.Rmd | 5 inst/doc/vismeteor.html | 21 - inst/doc/vmgeom.html | 4 inst/doc/vmideal.html | 4 man/load_vmdb.Rd | 30 +- tests/testthat/fixtures/empty/example.com/api/v1/magnitudes.json | 2 tests/testthat/fixtures/empty/example.com/api/v1/rates.json | 2 tests/testthat/fixtures/full/example.com/api/v1/magnitudes.json | 6 tests/testthat/fixtures/full/example.com/api/v1/rates.json | 9 tests/testthat/fixtures/sporadic_mixed |only tests/testthat/fixtures/sporadic_mixed_magn |only tests/testthat/fixtures/sporadic_only |only tests/testthat/fixtures/sporadic_only_magn |only tests/testthat/test_load_vmdb.R | 129 +++++++++ vignettes/select_knots.Rmd | 19 - vignettes/vismeteor.Rmd | 5 24 files changed, 402 insertions(+), 146 deletions(-)
Title: Data from the Ecuador Truth Commission
Description: Provides access to data collected by the Ecuadorian Truth Commission.
Allows users to extract and analyze systematized information for human rights
research in Ecuador. The package contains datasets documenting human rights
violations from 1984-2008, including victim information, violation types,
perpetrators, and geographic distribution.
Author: Adriana Robles [aut] ,
Javier Borja [aut, cre]
Maintainer: Javier Borja <javier@demografiando.pro>
Diff between verdadecu versions 1.0.0 dated 2025-09-18 and 1.0.1 dated 2026-05-19
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ NEWS.md | 4 ++++ inst/CITATION | 4 ++-- inst/doc/verdadecu.Rmd | 1 + inst/doc/verdadecu.html | 6 +++--- vignettes/verdadecu.Rmd | 1 + 7 files changed, 20 insertions(+), 14 deletions(-)
Title: Descriptive Statistics, Summary Tables, and Data Management
Tools
Description: Provides tabulation, descriptive-summary, and
variable-inspection tools for applied data analysis. Frequency
tables and cross-tabulations with contingency-table association
measures (Cramer's V, Phi, Goodman-Kruskal Gamma, Kendall's
Tau-b, Somers' D, and others); categorical and continuous
summary tables; regression coefficient tables for one or more
'lm' or 'glm' fits side by side; and outcome-by-group
comparison tables from linear models with optional additive
covariate adjustment. All table outputs follow APA conventions
and expose 'broom'-compatible 'tidy()' / 'glance()' methods
for downstream pipelines. Helpers cover interactive codebooks,
variable-label extraction, clipboard export, and row-wise
descriptive summaries.
Author: Amal Tawfik [aut, cre, cph]
Maintainer: Amal Tawfik <amal.tawfik@hesav.ch>
Diff between spicy versions 0.11.0 dated 2026-05-04 and 0.12.0 dated 2026-05-19
DESCRIPTION | 38 LICENSE | 4 MD5 | 243 NAMESPACE | 11 NEWS.md | 111 R/abort.R | 372 + R/assoc.R | 158 R/code_book-filename.R | 13 R/code_book-validation.R | 8 R/code_book.R | 40 R/copy_clipboard.R | 57 R/count_n.R | 111 R/cross_tab.R | 180 R/data.R | 39 R/freq.R | 70 R/freq_print.R | 66 R/glm_compute.R |only R/label_from_names.R | 50 R/lm_compute.R |only R/lm_helpers.R |only R/mean_n.R | 20 R/regression_align.R |only R/regression_ame.R |only R/regression_broom.R |only R/regression_dispatch.R |only R/regression_extract.R |only R/regression_nested.R |only R/regression_partial.R |only R/regression_render.R |only R/regression_structured.R |only R/regression_titlefooter.R |only R/regression_transform.R |only R/regression_validate.R |only R/spicy-package.R | 93 R/spicy_tables.R | 53 R/standardize_glm.R |only R/standardize_lm.R |only R/sum_n.R | 35 R/table_categorical.R | 108 R/table_categorical_print.R | 3 R/table_continuous.R | 140 R/table_continuous_lm.R | 5187 +++++++-------------- R/table_continuous_lm_print.R | 48 R/table_continuous_lm_render.R |only R/table_continuous_print.R | 19 R/table_helpers.R | 438 + R/table_regression.R |only R/tables_ascii.R | 1332 +++-- R/varlist-values.R | 17 R/varlist.R | 46 README.md | 54 build/vignette.rds |binary inst/CITATION | 21 inst/WORDLIST |only inst/citation.bib | 15 inst/doc/association-measures.Rmd | 16 inst/doc/association-measures.html | 19 inst/doc/frequency-tables.Rmd | 11 inst/doc/frequency-tables.html | 10 inst/doc/spicy.Rmd | 23 inst/doc/spicy.html | 19 inst/doc/summary-tables-reporting.R | 15 inst/doc/summary-tables-reporting.Rmd | 24 inst/doc/summary-tables-reporting.html | 105 inst/doc/table-categorical.R | 15 inst/doc/table-categorical.Rmd | 20 inst/doc/table-categorical.html | 8 inst/doc/table-continuous-lm.R | 35 inst/doc/table-continuous-lm.Rmd | 834 +-- inst/doc/table-continuous-lm.html | 547 +- inst/doc/table-continuous.R | 16 inst/doc/table-continuous.Rmd | 27 inst/doc/table-continuous.html | 149 inst/doc/table-regression.R |only inst/doc/table-regression.Rmd |only inst/doc/table-regression.html |only inst/doc/variable-exploration.Rmd | 20 inst/doc/variable-exploration.html | 18 man/as.data.frame.spicy_regression_table.Rd |only man/as_structured.Rd |only man/assoc_measures.Rd | 21 man/build_ascii_table.Rd | 61 man/code_book.Rd | 37 man/copy_clipboard.Rd | 59 man/count_n.Rd | 102 man/cross_tab.Rd | 51 man/freq.Rd | 55 man/goodman_kruskal_tau.Rd | 7 man/kendall_tau_c.Rd | 6 man/label_from_names.Rd | 43 man/mean_n.Rd | 20 man/phi.Rd | 14 man/print.spicy_freq_table.Rd | 70 man/sochealth.Rd | 37 man/somers_d.Rd | 16 man/spicy-package.Rd | 97 man/spicy_print_table.Rd | 57 man/spicy_tables.Rd | 64 man/sum_n.Rd | 20 man/table_categorical.Rd | 64 man/table_continuous.Rd | 120 man/table_continuous_lm.Rd | 1930 ++++--- man/table_regression.Rd |only man/tidy.spicy_categorical_table.Rd | 3 man/tidy.spicy_continuous_lm_table.Rd | 15 man/tidy.spicy_continuous_table.Rd | 17 man/tidy.spicy_regression_table.Rd |only man/uncertainty_coef.Rd | 18 man/varlist.Rd | 40 man/yule_q.Rd | 14 tests/spelling.R |only tests/testthat/_snaps/snapshots.md | 28 tests/testthat/_snaps/table_regression.md |only tests/testthat/test-assoc.R | 65 tests/testthat/test-code_book.R | 8 tests/testthat/test-count_n.R | 13 tests/testthat/test-cross_tab.R | 82 tests/testthat/test-lm_helpers.R |only tests/testthat/test-regression_align.R |only tests/testthat/test-regression_ame_satterthwaite.R |only tests/testthat/test-regression_broom.R |only tests/testthat/test-regression_coverage_push.R |only tests/testthat/test-regression_dispatch_engines.R |only tests/testthat/test-regression_glm.R |only tests/testthat/test-regression_nested.R |only tests/testthat/test-regression_render.R |only tests/testthat/test-regression_structured.R |only tests/testthat/test-regression_titlefooter.R |only tests/testthat/test-regression_transform.R |only tests/testthat/test-regression_validate_branches.R |only tests/testthat/test-snapshots.R | 31 tests/testthat/test-table_categorical.R | 24 tests/testthat/test-table_continuous.R | 2 tests/testthat/test-table_continuous_lm.R | 54 tests/testthat/test-table_regression.R |only vignettes/_pkgdown-helpers.R |only vignettes/association-measures.Rmd | 16 vignettes/frequency-tables.Rmd | 11 vignettes/spicy.Rmd | 23 vignettes/summary-tables-reporting.Rmd | 24 vignettes/table-categorical.Rmd | 20 vignettes/table-continuous-lm.Rmd | 834 +-- vignettes/table-continuous.Rmd | 27 vignettes/table-regression.Rmd |only vignettes/variable-exploration.Rmd | 20 145 files changed, 7863 insertions(+), 7608 deletions(-)
Title: Open Working Directory
Description: Open the current working directory (or a given directory path) in your computer's file manager.
Author: Benjamin G. Feakins [aut, cre] ,
Benjamin J. Cairns [ctb] ,
University of Oxford [cph, sht]
Maintainer: Benjamin G. Feakins <feakster@posteo.eu>
Diff between owd versions 1.0.6 dated 2020-08-05 and 1.0-7 dated 2026-05-19
DESCRIPTION | 25 ++++++++++++++----------- MD5 | 8 ++++---- inst/CITATION | 4 ++-- inst/NEWS.Rd | 6 ++++++ man/owd.Rd | 2 +- 5 files changed, 27 insertions(+), 18 deletions(-)
Title: Classify Open Street Map Features
Description: Classify Open Street Map (OSM) features into meaningful functional
or analytical categories. Designed for OSM PBF files, e.g. from <https://download.geofabrik.de/>
imported as spatial data frames. A classification consists of a list of categories that are related to
certain OSM tags and values. Given a layer from an OSM PBF file and a classification, the main
osm_classify() function returns a classification data table giving, for each feature, the primary and
alternative categories (if there is overlap) assigned, and the tag(s) and value(s) matched on.
The package also contains a classification of OSM features by economic function/significance,
following Krantz (2023) <https://www.ssrn.com/abstract=4537867>.
Author: Sebastian Krantz [aut, cre]
Maintainer: Sebastian Krantz <sebastian.krantz@graduateinstitute.ch>
Diff between osmclass versions 0.1.4 dated 2026-05-02 and 0.1.5 dated 2026-05-19
DESCRIPTION | 6 ++-- MD5 | 11 ++++---- NAMESPACE | 1 NEWS.md | 6 ++++ R/functions.R | 57 ++++++++++++++++++++++++++++++++++++++++++++++ man/osm_other_tags_str.Rd |only man/osmclass-package.Rd | 1 7 files changed, 74 insertions(+), 8 deletions(-)
Title: NHANES Data Search, Preview, and Download Tools
Description: Search, preview, and download datasets from the National Health and Nutrition Examination Survey (NHANES) across survey cycles. The package provides functions to identify relevant datasets by keyword, inspect available .XPT files before downloading, and organize retrieved data locally. Data are retrieved from the NHANES web services available at <https://wwwn.cdc.gov/nchs/nhanes/> .
Author: Sushma Dahal [aut, cre]
Maintainer: Sushma Dahal <sushdahal@gmail.com>
Diff between nhanesdiva versions 1.0.0 dated 2026-05-19 and 1.0.1 dated 2026-05-19
DESCRIPTION | 6 +++--- MD5 | 7 ++++--- NEWS.md |only R/get_nhanes_data.R | 6 ++++-- R/nhanes_download_utilities.R | 2 +- 5 files changed, 12 insertions(+), 9 deletions(-)
Title: Grouped Hyper Data Frame
Description: To aggregate a hyper data frame, defined in the package 'spatstat.geom', according to a grouping structure. To facilitate downstream analysis based on a "grouped" hyper data frame.
Author: Tingting Zhan [aut, cre]
Maintainer: Tingting Zhan <tingtingzhan@gmail.com>
This is a re-admission after prior archival of version 0.3.6 dated 2026-03-10
Diff between groupedHyperframe versions 0.3.6 dated 2026-03-10 and 0.4.1 dated 2026-05-19
groupedHyperframe-0.3.6/groupedHyperframe/R/Math.R |only groupedHyperframe-0.3.6/groupedHyperframe/R/Surv.R |only groupedHyperframe-0.3.6/groupedHyperframe/R/aggregate.R |only groupedHyperframe-0.3.6/groupedHyperframe/R/aggregate_marks.R |only groupedHyperframe-0.3.6/groupedHyperframe/R/append_marks.R |only groupedHyperframe-0.3.6/groupedHyperframe/R/as.groupedHyperframe.R |only groupedHyperframe-0.3.6/groupedHyperframe/R/attr_.R |only groupedHyperframe-0.3.6/groupedHyperframe/R/cash_set.R |only groupedHyperframe-0.3.6/groupedHyperframe/R/cbind.groupedHyperframe.R |only groupedHyperframe-0.3.6/groupedHyperframe/R/cor_spatial.R |only groupedHyperframe-0.3.6/groupedHyperframe/R/density_marks.R |only groupedHyperframe-0.3.6/groupedHyperframe/R/fvlist.R |only groupedHyperframe-0.3.6/groupedHyperframe/R/groupedHyperframe.R |only groupedHyperframe-0.3.6/groupedHyperframe/R/grouped_ppp.R |only groupedHyperframe-0.3.6/groupedHyperframe/R/hyperframe_S3.R |only groupedHyperframe-0.3.6/groupedHyperframe/R/interpolation.fv.R |only groupedHyperframe-0.3.6/groupedHyperframe/R/kerndens.R |only groupedHyperframe-0.3.6/groupedHyperframe/R/key1val.R |only groupedHyperframe-0.3.6/groupedHyperframe/R/kmeans.R |only groupedHyperframe-0.3.6/groupedHyperframe/R/kmeans_S3.R |only groupedHyperframe-0.3.6/groupedHyperframe/R/ksmooth.fv.R |only groupedHyperframe-0.3.6/groupedHyperframe/R/lastLegal.R |only groupedHyperframe-0.3.6/groupedHyperframe/R/loess.fv.R |only groupedHyperframe-0.3.6/groupedHyperframe/R/mc_identical_by.R |only groupedHyperframe-0.3.6/groupedHyperframe/R/nncross.R |only groupedHyperframe-0.3.6/groupedHyperframe/R/op_hyperframe.R |only groupedHyperframe-0.3.6/groupedHyperframe/R/op_ppp.R |only groupedHyperframe-0.3.6/groupedHyperframe/R/op_ppplist.R |only groupedHyperframe-0.3.6/groupedHyperframe/R/pmean.R |only groupedHyperframe-0.3.6/groupedHyperframe/R/ppp_S3.R |only groupedHyperframe-0.3.6/groupedHyperframe/R/quantile.R |only groupedHyperframe-0.3.6/groupedHyperframe/R/rlabelRes.R |only groupedHyperframe-0.3.6/groupedHyperframe/R/rmax.R |only groupedHyperframe-0.3.6/groupedHyperframe/R/smooth.spline.fv.R |only groupedHyperframe-0.3.6/groupedHyperframe/R/subset_ppp_tzh.R |only groupedHyperframe-0.3.6/groupedHyperframe/R/superimpose.hyperframe.R |only groupedHyperframe-0.3.6/groupedHyperframe/R/vignette.R |only groupedHyperframe-0.3.6/groupedHyperframe/R/vtrapz.R |only groupedHyperframe-0.3.6/groupedHyperframe/data/bib.rda |only groupedHyperframe-0.3.6/groupedHyperframe/inst |only groupedHyperframe-0.3.6/groupedHyperframe/man/aggregate.vectorlist.Rd |only groupedHyperframe-0.3.6/groupedHyperframe/man/aggregate_marks.Rd |only groupedHyperframe-0.3.6/groupedHyperframe/man/append_marks_set.Rd |only groupedHyperframe-0.3.6/groupedHyperframe/man/as.fvlist.Rd |only groupedHyperframe-0.3.6/groupedHyperframe/man/as.groupedHyperframe.Rd |only groupedHyperframe-0.3.6/groupedHyperframe/man/as.list.fvlist.Rd |only 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groupedHyperframe-0.3.6/groupedHyperframe/man/length.hyperframe.Rd |only groupedHyperframe-0.3.6/groupedHyperframe/man/loess.fv.Rd |only groupedHyperframe-0.3.6/groupedHyperframe/man/mc_identical_by.Rd |only groupedHyperframe-0.3.6/groupedHyperframe/man/methods2kable.Rd |only groupedHyperframe-0.3.6/groupedHyperframe/man/na_fail_ppp.Rd |only groupedHyperframe-0.3.6/groupedHyperframe/man/op_hyperframe.Rd |only groupedHyperframe-0.3.6/groupedHyperframe/man/op_ppplist.Rd |only groupedHyperframe-0.3.6/groupedHyperframe/man/pairwise_cor_spatial.Rd |only groupedHyperframe-0.3.6/groupedHyperframe/man/plot.pppkm.Rd |only groupedHyperframe-0.3.6/groupedHyperframe/man/pmean.Rd |only groupedHyperframe-0.3.6/groupedHyperframe/man/ppp2..Rd |only groupedHyperframe-0.3.6/groupedHyperframe/man/print.cumv.Rd |only groupedHyperframe-0.3.6/groupedHyperframe/man/print.fvlist.Rd |only groupedHyperframe-0.3.6/groupedHyperframe/man/print.groupedHyperframe.Rd |only groupedHyperframe-0.3.6/groupedHyperframe/man/print.pppkm.Rd |only groupedHyperframe-0.3.6/groupedHyperframe/man/print.summary.groupedHyperframe.Rd |only groupedHyperframe-0.3.6/groupedHyperframe/man/print.vectorlist.Rd |only groupedHyperframe-0.3.6/groupedHyperframe/man/quantile.anylist.Rd |only groupedHyperframe-0.3.6/groupedHyperframe/man/quantile.hyperframe.Rd |only groupedHyperframe-0.3.6/groupedHyperframe/man/quantile.ppp.Rd |only groupedHyperframe-0.3.6/groupedHyperframe/man/quantile.ppplist.Rd |only groupedHyperframe-0.3.6/groupedHyperframe/man/rds2versiondate.Rd |only groupedHyperframe-0.3.6/groupedHyperframe/man/rlabelRes.Rd |only groupedHyperframe-0.3.6/groupedHyperframe/man/rmax.Rd |only groupedHyperframe-0.3.6/groupedHyperframe/man/smooth.spline.fv.Rd |only groupedHyperframe-0.3.6/groupedHyperframe/man/split.hyperframekm.Rd |only groupedHyperframe-0.3.6/groupedHyperframe/man/split.pppkm.Rd |only groupedHyperframe-0.3.6/groupedHyperframe/man/split.pppkmlist.Rd |only 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More information about groupedHyperframe at CRAN
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Title: Spatiotemporal Mixture Risk Assessment
Description: Connecting spatiotemporal exposure to individual and
population-level risk via source-to-outcome continuum modeling. The
package, methods, and case-studies are described in Messier, Reif, and
Marvel (2025) <doi:10.1186/s40246-024-00711-8> and Eccles et al.
(2023) <doi:10.1016/j.scitotenv.2022.158905>.
Author: Skylar Marvel [aut, cre] ,
David Reif [aut] ,
Kyle Messier [aut] ,
Spatiotemporal Exposures and Toxicology Group [cph]
Maintainer: Skylar Marvel <skylar.marvel@nih.gov>
Diff between GeoTox versions 0.3.0 dated 2026-01-16 and 1.0.0 dated 2026-05-19
GeoTox-0.3.0/GeoTox/R/calc_concentration_response.R |only GeoTox-0.3.0/GeoTox/R/calculate_response.R |only GeoTox-0.3.0/GeoTox/R/check_lengths.R |only GeoTox-0.3.0/GeoTox/R/check_names.R |only GeoTox-0.3.0/GeoTox/R/check_types.R |only GeoTox-0.3.0/GeoTox/R/compute_sensitivity.R |only GeoTox-0.3.0/GeoTox/R/get_fixed_age.R |only GeoTox-0.3.0/GeoTox/R/get_fixed_css.R |only GeoTox-0.3.0/GeoTox/R/get_fixed_obesity.R |only GeoTox-0.3.0/GeoTox/R/get_fixed_other.R |only GeoTox-0.3.0/GeoTox/R/get_fixed_params.R |only GeoTox-0.3.0/GeoTox/R/plot_exposure.R |only GeoTox-0.3.0/GeoTox/R/plot_hill.R |only GeoTox-0.3.0/GeoTox/R/plot_resp.R |only GeoTox-0.3.0/GeoTox/R/plot_sensitivity.R |only GeoTox-0.3.0/GeoTox/R/resp_quantiles.R |only GeoTox-0.3.0/GeoTox/R/sample_Css.R |only GeoTox-0.3.0/GeoTox/R/set_boundaries.R |only GeoTox-0.3.0/GeoTox/R/set_hill_params.R |only GeoTox-0.3.0/GeoTox/R/set_population.R |only GeoTox-0.3.0/GeoTox/R/simulate_inhalation_rate.R |only GeoTox-0.3.0/GeoTox/inst/doc/package_data.Rmd |only GeoTox-0.3.0/GeoTox/man/calc_concentration_response.Rd |only GeoTox-0.3.0/GeoTox/man/calc_independent_action.Rd |only GeoTox-0.3.0/GeoTox/man/calculate_response.Rd |only GeoTox-0.3.0/GeoTox/man/compute_sensitivity.Rd |only GeoTox-0.3.0/GeoTox/man/figures/README-pressure-1.png |only GeoTox-0.3.0/GeoTox/man/get_fixed_age.Rd |only GeoTox-0.3.0/GeoTox/man/get_fixed_css.Rd |only GeoTox-0.3.0/GeoTox/man/get_fixed_obesity.Rd |only GeoTox-0.3.0/GeoTox/man/get_fixed_other.Rd |only GeoTox-0.3.0/GeoTox/man/get_fixed_params.Rd |only GeoTox-0.3.0/GeoTox/man/hill_conc.Rd |only GeoTox-0.3.0/GeoTox/man/hill_val.Rd |only GeoTox-0.3.0/GeoTox/man/plot_exposure.Rd |only GeoTox-0.3.0/GeoTox/man/plot_hill.Rd |only GeoTox-0.3.0/GeoTox/man/plot_resp.Rd |only GeoTox-0.3.0/GeoTox/man/plot_sensitivity.Rd |only GeoTox-0.3.0/GeoTox/man/resp_quantiles.Rd |only GeoTox-0.3.0/GeoTox/man/sample_Css.Rd |only GeoTox-0.3.0/GeoTox/man/set_boundaries.Rd |only GeoTox-0.3.0/GeoTox/man/set_hill_params.Rd |only GeoTox-0.3.0/GeoTox/man/set_population.Rd |only GeoTox-0.3.0/GeoTox/man/simulate_inhalation_rate.Rd |only GeoTox-0.3.0/GeoTox/tests/testthat/test-calc_concentration_response.R |only GeoTox-0.3.0/GeoTox/tests/testthat/test-calculate_response.R |only GeoTox-0.3.0/GeoTox/tests/testthat/test-check_lengths.R |only GeoTox-0.3.0/GeoTox/tests/testthat/test-check_names.R |only GeoTox-0.3.0/GeoTox/tests/testthat/test-check_types.R |only GeoTox-0.3.0/GeoTox/tests/testthat/test-compute_sensitivity.R |only GeoTox-0.3.0/GeoTox/tests/testthat/test-get_fixed_age.R |only GeoTox-0.3.0/GeoTox/tests/testthat/test-get_fixed_css.R |only GeoTox-0.3.0/GeoTox/tests/testthat/test-get_fixed_obesity.R |only GeoTox-0.3.0/GeoTox/tests/testthat/test-get_fixed_other.R |only GeoTox-0.3.0/GeoTox/tests/testthat/test-get_fixed_params.R |only GeoTox-0.3.0/GeoTox/tests/testthat/test-plot_exposure.R |only GeoTox-0.3.0/GeoTox/tests/testthat/test-plot_hill.R |only GeoTox-0.3.0/GeoTox/tests/testthat/test-plot_resp.R |only GeoTox-0.3.0/GeoTox/tests/testthat/test-plot_sensitivity.R |only GeoTox-0.3.0/GeoTox/tests/testthat/test-resp_quantiles.R |only GeoTox-0.3.0/GeoTox/tests/testthat/test-sample_Css.R |only GeoTox-0.3.0/GeoTox/tests/testthat/test-set_boundaries.R |only GeoTox-0.3.0/GeoTox/tests/testthat/test-set_hill_params.R |only GeoTox-0.3.0/GeoTox/tests/testthat/test-set_population.R |only GeoTox-0.3.0/GeoTox/tests/testthat/test-simulate_inhalation_rate.R |only GeoTox-0.3.0/GeoTox/vignettes/package_data.Rmd |only GeoTox-1.0.0/GeoTox/DESCRIPTION | 46 GeoTox-1.0.0/GeoTox/MD5 | 216 -- GeoTox-1.0.0/GeoTox/NAMESPACE | 44 GeoTox-1.0.0/GeoTox/NEWS.md | 10 GeoTox-1.0.0/GeoTox/R/GeoTox-package.R | 6 GeoTox-1.0.0/GeoTox/R/GeoTox.R | 332 +-- GeoTox-1.0.0/GeoTox/R/add_tables.R |only GeoTox-1.0.0/GeoTox/R/boundary_table.R |only GeoTox-1.0.0/GeoTox/R/calc_independent_action.R | 38 GeoTox-1.0.0/GeoTox/R/calc_internal_dose.R | 147 - 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Title: Deductive Rational Method
Description: Apply the Deductive Rational Method to a monthly series of flow or precipitation data to fill in missing data. The method is as described in: Campos, D.F., (1984, ISBN:9686194444).
Author: Alonso Arriagada [aut, cre]
Maintainer: Alonso Arriagada <alonso.arriagada@usach.cl>
Diff between DeductiveR versions 1.1.0 dated 2024-12-17 and 2.0.0 dated 2026-05-19
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Title: Dynamic Web-Based Analytics for the Energy Industry
Description: A 'Shiny' web application for energy industry analytics.
Take an overview of the industry, measure Key Performance Indicators,
identify changes in the industry over time, and discover new relationships in the data.
Author: Paul Govan [aut, cre, cph]
Maintainer: Paul Govan <paul.govan2@gmail.com>
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