Title: Work with the Doges/Dogaresse Dataset
Description: Work with data on Venetian doges and dogaresse and the noble families of the Republic of Venice, and use it for social network analysis, as used in Merelo (2022) <arXiv:2209.07334>.
Author: Juan Julian Merelo-Guervos
Maintainer: Juan Julian Merelo-Guervos <jjmerelo@gmail.com>
Diff between dogesr versions 0.2.0 dated 2023-02-21 and 0.3.0 dated 2023-05-28
DESCRIPTION | 6 - MD5 | 48 +++++---- NEWS.md | 9 + R/marriage.graph.R | 11 -- README.md | 1 build/partial.rdb |binary build/vignette.rds |binary data/doge.families.rda |only data/doges.marriages.rda |only data/doges.rda |binary data/families.rda |binary inst/doc/counting-doge-families.R |only inst/doc/counting-doge-families.Rmd |only inst/doc/counting-doge-families.html |only inst/doc/doges-family-types.Rmd | 4 inst/doc/doges-family-types.html | 170 ++++++++++++++--------------------- inst/doc/doges-social-network.R | 4 inst/doc/doges-social-network.Rmd | 13 +- inst/doc/doges-social-network.html | 52 ++++++---- inst/doc/doges-terms.html | 23 +++- inst/doges.bib | 15 +++ man/doge.families.Rd |only man/doges.marriages.Rd |only man/families.Rd | 2 man/marriage.graph.Rd | 4 tests/testthat/test-dogesdata.R | 2 vignettes/counting-doge-families.Rmd |only vignettes/doges-family-types.Rmd | 4 vignettes/doges-social-network.Rmd | 13 +- 29 files changed, 198 insertions(+), 183 deletions(-)
Title: Tools for Joint Sentiment and Topic Analysis of Textual Data
Description: A framework that joins topic modeling and sentiment analysis of
textual data. The package implements a fast Gibbs sampling estimation of
Latent Dirichlet Allocation (Griffiths and Steyvers (2004)
<doi:10.1073/pnas.0307752101>) and Joint Sentiment/Topic Model (Lin, He,
Everson and Ruger (2012) <doi:10.1109/TKDE.2011.48>). It offers a variety of
helpers and visualizations to analyze the result of topic modeling. The
framework also allows enriching topic models with dates and externally
computed sentiment measures. A flexible aggregation scheme enables the
creation of time series of sentiment or topical proportions from the enriched
topic models. Moreover, a novel method jointly aggregates topic proportions
and sentiment measures to derive time series of topical sentiment.
Author: Olivier Delmarcelle [aut, cre]
,
Samuel Borms [ctb] ,
Chengua Lin [cph] ,
Yulan He [cph] ,
Jose Bernardo [cph] ,
David Robinson [cph] ),
Julia Silge [cph] ,
<https://orcid.org/0000-0002-3671-836X>)
Maintainer: Olivier Delmarcelle <delmarcelle.olivier@gmail.com>
Diff between sentopics versions 0.7.1 dated 2022-05-18 and 0.7.2 dated 2023-05-28
DESCRIPTION | 15 - MD5 | 35 ++-- NAMESPACE | 2 NEWS.md | 5 R/conversions.R | 240 +++++++++++++++++++++++------ R/methods.R | 107 ++++++------- R/others.R | 7 R/timeSeries.R | 90 +++++------ build/vignette.rds |binary inst/doc/Basic_usage.html | 306 ++++++++------------------------------ inst/doc/Topical_time_series.html | 306 ++++++++------------------------------ man/as.LDA.Rd | 16 + man/melt.Rd | 4 man/sentiment_series.Rd | 2 src/Makevars | 5 src/Makevars.win | 1 tests/testthat/Rplots.pdf |only tests/testthat/test-conversions.R | 39 ++++ tests/testthat/test-utils.R | 14 + 19 files changed, 527 insertions(+), 667 deletions(-)
Title: Fit, Simulate and Diagnose Exponential-Family Models for
Networks
Description: An integrated set of tools to analyze and simulate networks based on exponential-family random graph models (ERGMs). 'ergm' is a part of the Statnet suite of packages for network analysis. See Hunter, Handcock, Butts, Goodreau, and Morris (2008) <doi:10.18637/jss.v024.i03> and Krivitsky, Hunter, Morris, and Klumb (2023) <doi:10.18637/jss.v105.i06>.
Author: Mark S. Handcock [aut],
David R. Hunter [aut],
Carter T. Butts [aut],
Steven M. Goodreau [aut],
Pavel N. Krivitsky [aut, cre] ,
Martina Morris [aut],
Li Wang [ctb],
Kirk Li [ctb],
Skye Bender-deMoll [ctb],
Chad Klumb [ctb],
Michal Bojanowski [ctb] ,
[...truncated...]
Maintainer: Pavel N. Krivitsky <pavel@statnet.org>
Diff between ergm versions 4.4.0 dated 2023-01-27 and 4.5.0 dated 2023-05-28
ergm-4.4.0/ergm/BUGS |only ergm-4.4.0/ergm/man/ddsp-ergmTerm-076a318a.Rd |only ergm-4.4.0/ergm/man/desp-ergmTerm-04c7d89a.Rd |only ergm-4.4.0/ergm/man/dgwdsp-ergmTerm-533d79cb.Rd |only ergm-4.4.0/ergm/man/dgwesp-ergmTerm-c07796bb.Rd |only ergm-4.4.0/ergm/man/dgwnsp-ergmTerm-94667ff6.Rd |only ergm-4.4.0/ergm/man/dnsp-ergmTerm-fed3f8fd.Rd |only ergm-4.4.0/ergm/tests/testthat/test-gw-sp.R |only ergm-4.5.0/ergm/DESCRIPTION | 37 ergm-4.5.0/ergm/MD5 | 196 - ergm-4.5.0/ergm/NAMESPACE | 4 ergm-4.5.0/ergm/R/InitErgmConstraint.R | 6 ergm-4.5.0/ergm/R/InitErgmConstraint.blockdiag.R | 12 ergm-4.5.0/ergm/R/InitErgmTerm.R | 908 ----- ergm-4.5.0/ergm/R/InitErgmTerm.dgw_sp.R | 433 -- ergm-4.5.0/ergm/R/approx.hotelling.diff.test.R | 13 ergm-4.5.0/ergm/R/as.network.numeric.R | 79 ergm-4.5.0/ergm/R/control.ergm.R | 103 ergm-4.5.0/ergm/R/ergm.CD.fixed.R | 58 ergm-4.5.0/ergm/R/ergm.Cprepare.R | 6 ergm-4.5.0/ergm/R/ergm.MCMLE.R | 58 ergm-4.5.0/ergm/R/ergm.R | 344 - ergm-4.5.0/ergm/R/ergm.bridge.R | 3 ergm-4.5.0/ergm/R/ergm.errors.R | 10 ergm-4.5.0/ergm/R/ergm.estimate.R | 15 ergm-4.5.0/ergm/R/ergm.getMCMCsample.R | 4 ergm-4.5.0/ergm/R/ergm.initialfit.R | 55 ergm-4.5.0/ergm/R/ergm.mple.R | 96 ergm-4.5.0/ergm/R/ergm.phase12.R | 31 ergm-4.5.0/ergm/R/ergm.pl.R | 16 ergm-4.5.0/ergm/R/ergm.stocapprox.R | 142 ergm-4.5.0/ergm/R/ergm.utility.R | 148 ergm-4.5.0/ergm/R/ergmMPLE.R | 2 ergm-4.5.0/ergm/R/ergm_mplecov.R |only ergm-4.5.0/ergm/R/logLik.ergm.R | 2 ergm-4.5.0/ergm/R/mcmc.diagnostics.ergm.R | 4 ergm-4.5.0/ergm/R/nparam.R | 1 ergm-4.5.0/ergm/R/predict.ergm.R | 8 ergm-4.5.0/ergm/R/rlebdm.R | 5 ergm-4.5.0/ergm/R/simulate.ergm.R | 14 ergm-4.5.0/ergm/R/summary.ergm.R | 6 ergm-4.5.0/ergm/R/zzz.R | 2 ergm-4.5.0/ergm/build/ergm.pdf |binary ergm-4.5.0/ergm/build/partial.rdb |binary ergm-4.5.0/ergm/build/stage23.rdb |only ergm-4.5.0/ergm/build/vignette.rds |binary ergm-4.5.0/ergm/inst/CITATION | 31 ergm-4.5.0/ergm/inst/NEWS.Rd | 81 ergm-4.5.0/ergm/inst/REFERENCES.bib | 16 ergm-4.5.0/ergm/inst/doc/ergm-term-crossRef.html | 555 --- ergm-4.5.0/ergm/inst/doc/ergm.pdf |binary ergm-4.5.0/ergm/inst/doc/nodal_attributes.html | 4 ergm-4.5.0/ergm/inst/include/ergm_util.h | 23 ergm-4.5.0/ergm/man/as.network.numeric.Rd | 16 ergm-4.5.0/ergm/man/b1degrange-ergmTerm-ae4dbc10.Rd | 7 ergm-4.5.0/ergm/man/b1degree-ergmTerm-b23eca4d.Rd | 15 ergm-4.5.0/ergm/man/b1star-ergmTerm-24b65fe7.Rd | 15 ergm-4.5.0/ergm/man/b2degrange-ergmTerm-d16c3697.Rd | 7 ergm-4.5.0/ergm/man/b2star-ergmTerm-76adb9af.Rd | 12 ergm-4.5.0/ergm/man/bd-ergmConstraint-54194cbb.Rd | 2 ergm-4.5.0/ergm/man/control.ergm.Rd | 99 ergm-4.5.0/ergm/man/degrange-ergmTerm-e31fe592.Rd | 7 ergm-4.5.0/ergm/man/degree-ergmTerm-64bfdc89.Rd | 7 ergm-4.5.0/ergm/man/dsp-ergmTerm-1a10473d.Rd | 49 ergm-4.5.0/ergm/man/ergm.mple.Rd | 31 ergm-4.5.0/ergm/man/ergm_cutoff_message.Rd |only ergm-4.5.0/ergm/man/esp-ergmTerm-d2e07fc8.Rd | 49 ergm-4.5.0/ergm/man/gwdsp-ergmTerm-4e3dfd97.Rd | 49 ergm-4.5.0/ergm/man/gwesp-ergmTerm-3d6fb5a8.Rd | 51 ergm-4.5.0/ergm/man/gwnsp-ergmTerm-6def2a32.Rd | 53 ergm-4.5.0/ergm/man/idegrange-ergmTerm-03001d90.Rd | 7 ergm-4.5.0/ergm/man/idegree-ergmTerm-036b6e10.Rd | 7 ergm-4.5.0/ergm/man/istar-ergmTerm-686da871.Rd | 15 ergm-4.5.0/ergm/man/kstar-ergmTerm-9ffb742c.Rd | 15 ergm-4.5.0/ergm/man/nsp-ergmTerm-4586ea4f.Rd | 51 ergm-4.5.0/ergm/man/odegrange-ergmTerm-a29a08d0.Rd | 7 ergm-4.5.0/ergm/man/odegree-ergmTerm-12c180fc.Rd | 7 ergm-4.5.0/ergm/man/ostar-ergmTerm-88787ec2.Rd | 15 ergm-4.5.0/ergm/man/predict.formula.Rd | 1 ergm-4.5.0/ergm/man/to_ergm_Cdouble.Rd | 5 ergm-4.5.0/ergm/src/MCMC.c.template.do_not_include_directly.h | 258 - ergm-4.5.0/ergm/src/MCMC.h.template.do_not_include_directly.h | 5 ergm-4.5.0/ergm/src/changestat.c | 1 ergm-4.5.0/ergm/src/changestats.c | 1525 -------- ergm-4.5.0/ergm/src/changestats.h | 4 ergm-4.5.0/ergm/src/changestats_concurrentties.c | 4 ergm-4.5.0/ergm/src/changestats_dgw_sp.c | 1762 ++++------ ergm-4.5.0/ergm/src/changestats_spcache.c | 10 ergm-4.5.0/ergm/src/changestats_test.c | 14 ergm-4.5.0/ergm/src/init.c | 12 ergm-4.5.0/ergm/tests/testthat/helper-expect-summary.R |only ergm-4.5.0/ergm/tests/testthat/test-as.network.numeric.R |only ergm-4.5.0/ergm/tests/testthat/test-basis.R |only ergm-4.5.0/ergm/tests/testthat/test-bd.R | 38 ergm-4.5.0/ergm/tests/testthat/test-constraints.R | 11 ergm-4.5.0/ergm/tests/testthat/test-ergm-san.R | 8 ergm-4.5.0/ergm/tests/testthat/test-mple-cov.R |only ergm-4.5.0/ergm/tests/testthat/test-mple-target.R | 2 ergm-4.5.0/ergm/tests/testthat/test-networkLite.R |only ergm-4.5.0/ergm/tests/testthat/test-nodrop.R | 30 ergm-4.5.0/ergm/tests/testthat/test-nonunique-names.R | 2 ergm-4.5.0/ergm/tests/testthat/test-stocapprox.R | 2 ergm-4.5.0/ergm/tests/testthat/test-term-bipartite.R | 37 ergm-4.5.0/ergm/tests/testthat/test-term-directed.R | 25 ergm-4.5.0/ergm/tests/testthat/test-term-flexible.R | 75 ergm-4.5.0/ergm/tests/testthat/test-term-gw-sp.R |only ergm-4.5.0/ergm/tests/testthat/test-term-undirected.R | 8 ergm-4.5.0/ergm/vignettes/old.ergm.Rmd.off |only 108 files changed, 2688 insertions(+), 5275 deletions(-)
Title: Advanced and Fast Data Transformation
Description: A C/C++ based package for advanced data transformation and
statistical computing in R that is extremely fast, class-agnostic,
and programmer friendly through a flexible and robust API. Core functionality
includes a rich set of S3 generic grouped and weighted statistical functions
for vectors, matrices and data frames, which provide efficient low-level
vectorizations, OpenMP multithreading, and skip missing values by default.
These are integrated with fast grouping and ordering algorithms (also callable
from C), and efficient data manipulation functions. The package also provides
a flexible and rigorous approach to time series and panel data in R. It further
includes fast functions for common statistical procedures, detailed (grouped,
weighted) summary statistics, powerful tools to work with nested data, fast
data object conversions, functions for memory efficient R programming, and
helpers to effectively deal with variable labels, attributes, and missing data.
It is well integrated wit [...truncated...]
Author: Sebastian Krantz [aut, cre],
Matt Dowle [ctb],
Arun Srinivasan [ctb],
Morgan Jacob [ctb],
Dirk Eddelbuettel [ctb],
Laurent Berge [ctb],
Kevin Tappe [ctb],
R Core Team and contributors worldwide [ctb],
Martyn Plummer [cph],
1999-2016 The R Core Team [ [...truncated...]
Maintainer: Sebastian Krantz <sebastian.krantz@graduateinstitute.ch>
Diff between collapse versions 1.9.5 dated 2023-04-07 and 1.9.6 dated 2023-05-28
DESCRIPTION | 8 +- MD5 | 95 +++++++++++++++-------------- NEWS.md | 14 +++- R/BY.R | 12 +-- R/GRP.R | 12 +-- R/collap.R | 54 +++++++++------- R/dapply.R | 6 - R/descr.R | 26 +++++-- R/fcount.R | 2 R/fsubset_ftransform_fmutate.R | 8 +- R/fsummarise.R | 2 R/indexing.R | 8 +- R/psacf.R | 4 - R/psmat.R | 2 R/pwcor_pwcov_pwnobs.R | 2 R/quick_conversion.R | 8 +- R/select_replace_add_vars.R | 9 +- build/vignette.rds |binary inst/doc/collapse_documentation.Rmd | 10 ++- inst/doc/collapse_documentation.html | 25 +++++-- inst/doc/collapse_object_handling.R |only inst/doc/collapse_object_handling.Rmd |only inst/doc/collapse_object_handling.html |only man/GGDC10S.Rd | 69 ++++++++++----------- man/collap.Rd | 16 ++-- man/dapply.Rd | 2 man/descr.Rd | 2 man/efficient-programming.Rd | 4 - man/fast-statistical-functions.Rd | 6 - man/fcumsum.Rd | 2 man/fdiff.Rd | 4 - man/fgrowth.Rd | 4 - man/flag.Rd | 4 - man/fmode.Rd | 2 man/fnth_fmedian.Rd | 2 man/fquantile.Rd | 2 man/fsubset.Rd | 4 - src/base_radixsort.c | 2 src/data.table.h | 32 +-------- src/data.table_init.c | 14 +--- src/data.table_subset.c | 47 +++++++++----- src/fmean.c | 2 src/fsum.c | 4 - src/gsplit.c | 2 src/programming.c | 8 +- tests/testthat/test-fsubset-ftransform.R | 5 + tests/testthat/test-misc.R | 2 tests/testthat/test-miscellaneous-issues.R | 16 ++++ tests/testthat/testthat-problems.rds |only vignettes/collapse_documentation.Rmd | 10 ++- vignettes/collapse_object_handling.Rmd |only 51 files changed, 320 insertions(+), 254 deletions(-)
Title: R Commander Plug-in for the 'WorldFlora' Package
Description: An R Commander plug-in for the 'WorldFlora' package. It was mainly developed to show work flows and scripts for first-time users.
Author: Roeland Kindt [cre, aut]
Maintainer: Roeland Kindt <RoelandCEKindt@gmail.com>
Diff between RcmdrPlugin.WorldFlora versions 1.2 dated 2022-09-07 and 1.3 dated 2023-05-28
DESCRIPTION | 10 ++-- MD5 | 19 +++++--- R/WFO.acceptable.match.GUI.R |only R/WFO.download.GUI.R | 2 R/WFO.match.fuzzyjoin.GUI.R |only R/WorldFlora.get.started.R | 47 ++++++++++++--------- inst/CITATION | 30 +++++++------ inst/ChangeLog | 69 ++++++++++++++++++-------------- inst/etc/Getting-started-WorldFlora.txt |only inst/etc/menus.txt | 41 ++++++++++--------- man/RcmdrPlugin.WorldFlora-internal.Rd | 2 man/WorldFlora.get.started.Rd | 18 ++++++++ 12 files changed, 143 insertions(+), 95 deletions(-)
More information about RcmdrPlugin.WorldFlora at CRAN
Permanent link
Title: Analysis of Augmented Randomised Complete Block Designs
Description: Functions for analysis of data generated from experiments in
augmented randomised complete block design according to Federer, W.T.
(1961) <doi:10.2307/2527837>. Computes analysis of variance, adjusted
means, descriptive statistics, genetic variability statistics etc.
Further includes data visualization and report generation functions.
Author: J. Aravind [aut, cre] ,
S. Mukesh Sankar [aut],
Dhammaprakash Pandhari Wankhede [aut]
,
Vikender Kaur [aut],
ICAR-NBGPR [cph]
Maintainer: J. Aravind <j.aravind@icar.gov.in>
Diff between augmentedRCBD versions 0.1.5 dated 2021-06-12 and 0.1.6 dated 2023-05-28
augmentedRCBD-0.1.5/augmentedRCBD/vignettes/tmp-pdfcrop-12084.tex |only augmentedRCBD-0.1.5/augmentedRCBD/vignettes/tmp-pdfcrop-12632.tex |only augmentedRCBD-0.1.5/augmentedRCBD/vignettes/tmp-pdfcrop-14248.tex |only augmentedRCBD-0.1.5/augmentedRCBD/vignettes/tmp-pdfcrop-17692.tex |only augmentedRCBD-0.1.5/augmentedRCBD/vignettes/tmp-pdfcrop-18776.tex |only augmentedRCBD-0.1.5/augmentedRCBD/vignettes/tmp-pdfcrop-19248.tex |only augmentedRCBD-0.1.5/augmentedRCBD/vignettes/tmp-pdfcrop-2168.tex |only augmentedRCBD-0.1.5/augmentedRCBD/vignettes/tmp-pdfcrop-2356.tex |only augmentedRCBD-0.1.6/augmentedRCBD/DESCRIPTION | 37 augmentedRCBD-0.1.6/augmentedRCBD/MD5 | 78 augmentedRCBD-0.1.6/augmentedRCBD/NAMESPACE | 8 augmentedRCBD-0.1.6/augmentedRCBD/NEWS.md | 15 augmentedRCBD-0.1.6/augmentedRCBD/R/augmentedRCBD.R | 365 +- augmentedRCBD-0.1.6/augmentedRCBD/R/augmentedRCBD.bulk.R | 175 - augmentedRCBD-0.1.6/augmentedRCBD/R/describe.augmentedRCBD.R | 4 augmentedRCBD-0.1.6/augmentedRCBD/R/freqdist.augmentedRCBD.R | 8 augmentedRCBD-0.1.6/augmentedRCBD/R/globals.R | 10 augmentedRCBD-0.1.6/augmentedRCBD/R/gva.augmentedRCBD.R | 7 augmentedRCBD-0.1.6/augmentedRCBD/R/print.augmentedRCBD.R | 73 augmentedRCBD-0.1.6/augmentedRCBD/R/print.augmentedRCBD.bulk.R | 225 + augmentedRCBD-0.1.6/augmentedRCBD/R/report.augmentedRCBD.R | 1129 ++++++- augmentedRCBD-0.1.6/augmentedRCBD/R/report.augmentedRCBD.bulk.R | 1447 ++++++++-- augmentedRCBD-0.1.6/augmentedRCBD/R/xtra.R | 2 augmentedRCBD-0.1.6/augmentedRCBD/README.md | 192 - augmentedRCBD-0.1.6/augmentedRCBD/build/augmentedRCBD.pdf |binary augmentedRCBD-0.1.6/augmentedRCBD/build/partial.rdb |binary augmentedRCBD-0.1.6/augmentedRCBD/build/stage23.rdb |only augmentedRCBD-0.1.6/augmentedRCBD/build/vignette.rds |binary augmentedRCBD-0.1.6/augmentedRCBD/inst/CITATION | 50 augmentedRCBD-0.1.6/augmentedRCBD/inst/REFERENCES.bib | 46 augmentedRCBD-0.1.6/augmentedRCBD/inst/doc/Data_Analysis_with_augmentedRCBD.Rmd | 120 augmentedRCBD-0.1.6/augmentedRCBD/inst/doc/Data_Analysis_with_augmentedRCBD.pdf |binary augmentedRCBD-0.1.6/augmentedRCBD/inst/extdata/augmentedRCBD.svg | 332 -- augmentedRCBD-0.1.6/augmentedRCBD/inst/schemaorg.json |only augmentedRCBD-0.1.6/augmentedRCBD/inst/template.docx |binary augmentedRCBD-0.1.6/augmentedRCBD/man/augmentedRCBD.Rd | 4 augmentedRCBD-0.1.6/augmentedRCBD/man/augmentedRCBD.bulk.Rd | 21 augmentedRCBD-0.1.6/augmentedRCBD/man/print.augmentedRCBD.Rd | 5 augmentedRCBD-0.1.6/augmentedRCBD/man/report.augmentedRCBD.Rd | 64 augmentedRCBD-0.1.6/augmentedRCBD/man/report.augmentedRCBD.bulk.Rd | 37 augmentedRCBD-0.1.6/augmentedRCBD/vignettes/Data_Analysis_with_augmentedRCBD.Rmd | 120 augmentedRCBD-0.1.6/augmentedRCBD/vignettes/REFERENCES.bib | 46 augmentedRCBD-0.1.6/augmentedRCBD/vignettes/augRCBDbulkexcel.png |only augmentedRCBD-0.1.6/augmentedRCBD/vignettes/augRCBDbulkword.png |binary augmentedRCBD-0.1.6/augmentedRCBD/vignettes/augRCBDexcel.png |only augmentedRCBD-0.1.6/augmentedRCBD/vignettes/augRCBDword.png |binary 46 files changed, 3410 insertions(+), 1210 deletions(-)
Title: Oblique Decision Random Forest for Classification and Regression
Description: The oblique decision tree (ODT) uses linear combinations of
predictors as partitioning variables in a decision tree. Oblique
Decision Random Forest (ODRF) is an ensemble of multiple ODTs
generated by feature bagging. Both can be used for classification and
regression as supplements to the classical CART of Breiman (1984)
<DOI:10.1201/9781315139470> and Random Forest of Breiman (2001)
<DOI:10.1023/A:1010933404324> respectively.
Author: Yu Liu [aut, cre, cph],
Yingcun Xia [aut]
Maintainer: Yu Liu <liuyuchina123@gmail.com>
Diff between ODRF versions 0.0.3 dated 2023-03-16 and 0.0.4 dated 2023-05-28
DESCRIPTION | 11 MD5 | 69 +++--- NEWS.md | 10 R/Accuracy.R | 34 +-- R/ODRF.R | 110 ++++----- R/ODT.R | 96 ++++++-- R/RotMat.R | 4 R/VarImp.R | 298 ++++++++++++++++----------- R/as_party_ODT.R | 36 +-- R/best_cut_node.R | 4 R/defaults.R | 9 R/online_ODRF.R | 109 +++++---- R/online_ODT.R | 100 ++++++--- R/plot_ODT.R | 2 R/predictTree.R |only R/predict_ODRF.R | 82 ++++--- R/predict_ODT.R | 124 ++++------- R/print_ODRF.R | 2 R/prune_ODRF.R | 110 +++++---- R/prune_ODT.R | 92 +++----- inst/WORDLIST | 4 inst/doc/Oblique-Decision-Random-Forest.html | 79 +++---- man/ODRF.Rd | 27 +- man/ODT.Rd | 17 - man/VarImp.Rd | 36 ++- man/best.cut.node.Rd | 4 man/online.ODRF.Rd | 4 man/online.ODT.Rd | 4 man/predict.ODRF.Rd | 5 src/gini_split.cpp | 11 src/infogain_split.cpp | 12 - src/mse_split.cpp | 12 - tests/testthat/test-ODRF.R | 4 tests/testthat/test-ODT.R | 13 - tests/testthat/test-predict_ODRF.R | 4 tests/testthat/test-predict_ODT.R | 6 36 files changed, 863 insertions(+), 681 deletions(-)
Title: Testing Differences Between Families of Trees
Description: Perform test to detect differences in structure between families of
trees. The method is based on cophenetic distances and aggregated
Student's tests.
Author: Nathalie Vialaneix [aut, cre] ,
Gwendaelle Cardenas [aut],
Marie Chavent [aut],
Sylvain Foissac [aut],
Pierre Neuvial [aut],
Nathanael Randriamihamison [aut]
Maintainer: Nathalie Vialaneix <nathalie.vialaneix@inrae.fr>
Diff between treediff versions 0.1 dated 2023-03-01 and 0.2 dated 2023-05-27
DESCRIPTION | 18 ++++++++++-------- MD5 | 26 +++++++++++++++++++++++--- NAMESPACE | 26 ++++++++++++++++++++++++++ NEWS.md |only R/HiC2Tree.R |only R/treediff.R | 2 +- inst |only man/HiC2Tree.Rd |only man/HiCDOCDataSet.Rd |only man/clusterTree.Rd |only man/normalizeCount.Rd |only tests/testthat/test-HiC2Tree.R |only 12 files changed, 60 insertions(+), 12 deletions(-)
Title: Bayesian Psychometric Measurement Using 'Stan'
Description: Estimate diagnostic classification models (also called cognitive
diagnostic models) with 'Stan'. Diagnostic classification models are
confirmatory latent class models, as described by Rupp et al.
(2010, ISBN: 978-1-60623-527-0). Automatically generate 'Stan' code for the
general loglinear cognitive diagnostic diagnostic model proposed by
Henson et al. (2009) <doi:10.1007/s11336-008-9089-5> and other subtypes that
introduce additional model constraints. Using the generated 'Stan' code,
estimate the model evaluate the model's performance using model fit indices,
information criteria, and reliability metrics.
Author: W. Jake Thompson [aut, cre] ,
Nathan Jones [ctb] ,
Matthew Johnson [cph] ),
Paul-Christian Buerkner [cph] ),
University of Kansas [cph],
Institute of Education Sciences [fnd]
Maintainer: W. Jake Thompson <wjakethompson@gmail.com>
Diff between measr versions 0.2.1 dated 2023-04-03 and 0.3.1 dated 2023-05-27
DESCRIPTION | 6 MD5 | 87 NEWS.md |only R/data-checks.R | 28 R/extract.R | 244 -- R/fit-dcm.R | 31 R/m2-methods.R | 6 R/measr-package.R | 7 R/model-evaluation.R | 2 R/ppmc.R | 2 R/priors.R | 31 R/stan-dina.R | 18 R/stan-lcdm.R | 65 R/stan-strc.R |only R/stan-utils.R | 5 R/utils-extract.R |only R/utils-fit.R | 2 R/utils-methods.R | 22 R/utils-model-evaluation.R | 12 R/utils.R | 21 README.md | 102 - inst/WORDLIST | 16 inst/stan/test_dina.stan | 1 man/default_dcm_priors.Rd | 10 man/get_parameters.Rd | 13 man/measr_dcm.Rd | 20 man/measr_extract.Rd | 94 man/measrprior.Rd | 5 man/model_evaluation.Rd | 2 src/stanExports_gqs_loglik.h | 4 src/stanExports_gqs_ppmc.h | 4 src/stanExports_gqs_probs.h | 4 src/stanExports_test_dina.h | 501 ++--- tests/testthat/_snaps/dina-code/param-estimates.md | 1 tests/testthat/_snaps/dino-code/param-estimates.md | 1 tests/testthat/_snaps/lcdm-ecpe-code/ecpe.md | 1 tests/testthat/_snaps/stan-scripts.md | 2022 +++++++++++++++++++-- tests/testthat/test-data-checks.R | 90 tests/testthat/test-ecpe.R | 12 tests/testthat/test-extract.R | 5 tests/testthat/test-m2-methods.R | 47 tests/testthat/test-mcmc.R | 77 tests/testthat/test-priors.R | 44 tests/testthat/test-reliability.R | 34 tests/testthat/test-stan-scripts.R | 12 tests/testthat/test-utils.R | 5 46 files changed, 2992 insertions(+), 724 deletions(-)
Title: Utility Functions for Forest Inventory Estimation and Analysis
Description: A set of tools for data wrangling, spatial data analysis,
statistical modeling (including direct, model-assisted, photo-based, and
small area tools), and USDA Forest Service data base tools. These tools are
aimed to help Foresters, Analysts, and Scientists extract and perform
analyses on USDA Forest Service data.
Author: Tracey Frescino [aut],
Chris Toney [aut],
Grayson White [aut, cre]
Maintainer: Grayson White <graysonwhite13@gmail.com>
Diff between FIESTAutils versions 1.1.6 dated 2023-05-04 and 1.1.7 dated 2023-05-27
FIESTAutils-1.1.6/FIESTAutils/R/CmbTable.R |only FIESTAutils-1.1.6/FIESTAutils/R/RunningStats.R |only FIESTAutils-1.1.6/FIESTAutils/R/save_largeList.R |only FIESTAutils-1.1.6/FIESTAutils/data/DEFAULT_NODATA.rda |only FIESTAutils-1.1.6/FIESTAutils/man/rasterToVRT.Rd |only FIESTAutils-1.1.6/FIESTAutils/src/r_cmb_table.cpp |only FIESTAutils-1.1.6/FIESTAutils/src/r_running_stats.cpp |only FIESTAutils-1.1.7/FIESTAutils/DESCRIPTION | 16 FIESTAutils-1.1.7/FIESTAutils/MD5 | 57 FIESTAutils-1.1.7/FIESTAutils/NAMESPACE | 12 FIESTAutils-1.1.7/FIESTAutils/R/FIESTAutils-package.R | 165 ++ FIESTAutils-1.1.7/FIESTAutils/R/aaa.R | 2 FIESTAutils-1.1.7/FIESTAutils/R/checks.R | 24 FIESTAutils-1.1.7/FIESTAutils/R/cool_functions.R | 86 + FIESTAutils-1.1.7/FIESTAutils/R/pcheck.functions.R | 18 FIESTAutils-1.1.7/FIESTAutils/R/raster_analysis.R | 1270 +++--------------- FIESTAutils-1.1.7/FIESTAutils/R/raster_functions.R | 6 FIESTAutils-1.1.7/FIESTAutils/R/re_exports.R |only FIESTAutils-1.1.7/FIESTAutils/R/spatial_functions.R | 80 - FIESTAutils-1.1.7/FIESTAutils/data/ref_codes.rda |binary FIESTAutils-1.1.7/FIESTAutils/data/ref_cond.rda |only FIESTAutils-1.1.7/FIESTAutils/data/ref_conversion.rda |only FIESTAutils-1.1.7/FIESTAutils/data/ref_estvar.rda |binary FIESTAutils-1.1.7/FIESTAutils/data/ref_plt.rda |only FIESTAutils-1.1.7/FIESTAutils/data/ref_popType.rda |only FIESTAutils-1.1.7/FIESTAutils/data/ref_shp.rda |only FIESTAutils-1.1.7/FIESTAutils/data/ref_species.rda |only FIESTAutils-1.1.7/FIESTAutils/data/ref_titles.rda |only FIESTAutils-1.1.7/FIESTAutils/data/ref_tree.rda |only FIESTAutils-1.1.7/FIESTAutils/man/DEFAULT_NODATA.Rd | 12 FIESTAutils-1.1.7/FIESTAutils/man/internal_desc.Rd | 3 FIESTAutils-1.1.7/FIESTAutils/man/raster_desc.Rd | 74 - FIESTAutils-1.1.7/FIESTAutils/man/reexports.Rd |only FIESTAutils-1.1.7/FIESTAutils/man/ref_cond.Rd |only FIESTAutils-1.1.7/FIESTAutils/man/ref_conversion.Rd |only FIESTAutils-1.1.7/FIESTAutils/man/ref_plt.Rd |only FIESTAutils-1.1.7/FIESTAutils/man/ref_popType.Rd |only FIESTAutils-1.1.7/FIESTAutils/man/ref_shp.Rd |only FIESTAutils-1.1.7/FIESTAutils/man/ref_species.Rd |only FIESTAutils-1.1.7/FIESTAutils/man/ref_titles.Rd |only FIESTAutils-1.1.7/FIESTAutils/man/ref_tree.Rd |only FIESTAutils-1.1.7/FIESTAutils/src/RcppExports.cpp | 5 42 files changed, 643 insertions(+), 1187 deletions(-)
Title: Extended Two-Way Fixed Effects
Description: Convenience functions for implementing extended two-way
fixed effect regressions a la Wooldridge (2021, 2022)
<doi:10.2139/ssrn.3906345>, <doi:10.2139/ssrn.4183726>.
Author: Grant McDermott [aut, cre] ,
Frederic Kluser [ctb]
Maintainer: Grant McDermott <grantmcd@uoregon.edu>
Diff between etwfe versions 0.3.2 dated 2023-05-02 and 0.3.3 dated 2023-05-27
DESCRIPTION | 8 MD5 | 10 NEWS.md | 8 inst/doc/etwfe.html | 566 +++++++++++++++++++++++----------------------- inst/tinytest/test_emfx.R | 5 inst/tinytest/test_xvar.R | 2 6 files changed, 306 insertions(+), 293 deletions(-)
Title: Use 'nlmixr2' to Interact with Open Source and Commercial
Software
Description: Run other estimation and simulation software via the 'nlmixr2' (Fidler et al (2019)
<doi:10.1002/psp4.12445>) interface including 'PKNCA', 'NONMEM' and 'Monolix'. While not required, you can
get/install the 'lixoftConnectors' package in the 'Monolix' installation, as
described at the following url
<https://monolix.lixoft.com/monolix-api/lixoftconnectors_installation/>. When
'lixoftConnectors' is available, 'Monolix' can be run directly instead of setting up
command line usage.
Author: Matthew Fidler [aut, cre] ,
Bill Denney [aut] ,
Nook Fulloption [ctb]
Maintainer: Matthew Fidler <matt.fidler@novartis.com>
Diff between babelmixr2 versions 0.1.0 dated 2022-10-28 and 0.1.1 dated 2023-05-27
DESCRIPTION | 26 +-- MD5 | 53 +++--- NAMESPACE | 13 + R/as.nlmixr2.R |only R/as.nlmixr2nonmem2rx.R |only R/convert.R | 5 R/monolixControl.R | 20 -- R/monolixNlmixr2est.R | 2 R/nonmemControl.R | 22 ++ R/nonmemNlmixr2est.R | 8 R/nonmemReadData.R | 259 ++++++++++++++++++++---------- R/nonmemRxUiGet.R | 27 ++- R/nonmemRxUiGetPk.R | 26 --- R/nonmemRxUiGetSub.R | 5 R/nonmemRxUiGetTable.R | 4 R/reexport.R | 27 ++- README.md | 64 +++++-- build/vignette.rds |binary inst/doc/new-estimation.Rmd | 10 - inst/doc/new-estimation.html | 1 man/as.nlmixr2.Rd |only man/nonmemControl.Rd | 9 + man/reexports.Rd | 14 + src/Makevars.in | 3 tests/testthat/bad-nonmem-data-convert.qs |only tests/testthat/test-as-nlmixr2.R |only tests/testthat/test-convert.R | 65 +++++++ tests/testthat/test-nonmem-read.R | 28 +-- tests/testthat/test-nonmem.R | 6 vignettes/new-estimation.Rmd | 10 - 30 files changed, 487 insertions(+), 220 deletions(-)
Title: Photobiological Calculations
Description: Definitions of classes, methods, operators and functions for use
in photobiology and radiation meteorology and climatology. Calculation of
effective (weighted) and not-weighted irradiances/doses, fluence rates,
transmittance, reflectance, absorptance, absorbance and diverse ratios and
other derived quantities from spectral data. Local maxima and minima: peaks,
valleys and spikes. Conversion between energy-and photon-based units.
Wavelength interpolation. Astronomical calculations related solar angles and
day length. Colours and vision. This package is part of the 'r4photobiology'
suite, Aphalo, P. J. (2015) <doi:10.19232/uv4pb.2015.1.14>.
Author: Pedro J. Aphalo [aut, cre] ,
Titta K. Kotilainen [ctb] ,
Glenn Davis [ctb],
Agnese Fazio [ctb]
Maintainer: Pedro J. Aphalo <pedro.aphalo@helsinki.fi>
Diff between photobiology versions 0.10.16 dated 2023-04-02 and 0.10.17 dated 2023-05-27
photobiology-0.10.16/photobiology/R/normalized.diff.idx.r |only photobiology-0.10.16/photobiology/R/spct.ratios.R |only photobiology-0.10.17/photobiology/DESCRIPTION | 8 photobiology-0.10.17/photobiology/MD5 | 68 +- photobiology-0.10.17/photobiology/NAMESPACE | 35 + photobiology-0.10.17/photobiology/NEWS.md | 17 photobiology-0.10.17/photobiology/R/NDxI.R |only photobiology-0.10.17/photobiology/R/filter-spct-ratios-fractions.r |only photobiology-0.10.17/photobiology/R/mspct.methods.R | 1 photobiology-0.10.17/photobiology/R/mspct.sample.R |only photobiology-0.10.17/photobiology/R/reflector-spct-ratios-fractions.r |only photobiology-0.10.17/photobiology/R/source-spct-fractions.R |only photobiology-0.10.17/photobiology/R/source-spct-ratios.R |only photobiology-0.10.17/photobiology/R/spct.fscale.r | 19 photobiology-0.10.17/photobiology/R/spct.normalize.r | 268 +++++++--- photobiology-0.10.17/photobiology/R/spct.operators.r | 167 +++--- photobiology-0.10.17/photobiology/R/spct.smooth.spct.r | 103 +++ photobiology-0.10.17/photobiology/R/zmspct.classes.R | 3 photobiology-0.10.17/photobiology/build/partial.rdb |binary photobiology-0.10.17/photobiology/build/vignette.rds |binary photobiology-0.10.17/photobiology/inst/doc/userguide-0-r4p-introduction.html | 2 photobiology-0.10.17/photobiology/inst/doc/userguide-1-radiation.html | 12 photobiology-0.10.17/photobiology/inst/doc/userguide-2-astronomy.html | 46 - photobiology-0.10.17/photobiology/man/Rfr_fraction.Rd |only photobiology-0.10.17/photobiology/man/Rfr_normdiff.Rd |only photobiology-0.10.17/photobiology/man/Rfr_ratio.Rd |only photobiology-0.10.17/photobiology/man/Tfr_fraction.Rd |only photobiology-0.10.17/photobiology/man/Tfr_normdiff.Rd |only photobiology-0.10.17/photobiology/man/Tfr_ratio.Rd |only photobiology-0.10.17/photobiology/man/e_fraction.Rd |only photobiology-0.10.17/photobiology/man/e_ratio.Rd | 60 +- photobiology-0.10.17/photobiology/man/eq_ratio.Rd | 24 photobiology-0.10.17/photobiology/man/fscale.Rd | 5 photobiology-0.10.17/photobiology/man/getNormalized.Rd | 46 + photobiology-0.10.17/photobiology/man/normalize.Rd | 26 photobiology-0.10.17/photobiology/man/normalized_diff_ind.Rd | 23 photobiology-0.10.17/photobiology/man/q_fraction.Rd |only photobiology-0.10.17/photobiology/man/q_ratio.Rd | 60 +- photobiology-0.10.17/photobiology/man/qe_ratio.Rd | 18 photobiology-0.10.17/photobiology/man/sample_spct.Rd |only photobiology-0.10.17/photobiology/man/setNormalized.Rd | 26 photobiology-0.10.17/photobiology/man/smooth_spct.Rd | 12 photobiology-0.10.17/photobiology/man/two_irrads.Rd |only photobiology-0.10.17/photobiology/man/two_reflectances.Rd |only photobiology-0.10.17/photobiology/man/two_transmittances.Rd |only 45 files changed, 770 insertions(+), 279 deletions(-)
Title: Statistics Norway's Miscellaneous Tools
Description: Functions used by other packages from Statistics Norway are gathered. General data manipulation functions, and functions for hierarchical computations are included (Langsrud, 2020) <doi:10.13140/RG.2.2.27313.61283>. The hierarchy specification functions are useful within statistical disclosure control.
Author: Oyvind Langsrud [aut, cre],
Daniel Lupp [aut],
Bjoern-Helge Mevik [ctb]
Maintainer: Oyvind Langsrud <oyl@ssb.no>
Diff between SSBtools versions 1.4.4 dated 2023-03-28 and 1.4.6 dated 2023-05-27
SSBtools-1.4.4/SSBtools/R/forEasySdcTable.R |only SSBtools-1.4.4/SSBtools/man/AddMapsInput.Rd |only SSBtools-1.4.4/SSBtools/man/AddNonExistingCode.Rd |only SSBtools-1.4.4/SSBtools/man/CrossDataDummyHierarchies.Rd |only SSBtools-1.4.4/SSBtools/man/CrossDataDummyHierarchy.Rd |only SSBtools-1.4.6/SSBtools/DESCRIPTION | 8 SSBtools-1.4.6/SSBtools/MD5 | 102 ++-- SSBtools-1.4.6/SSBtools/NAMESPACE | 2 SSBtools-1.4.6/SSBtools/R/AutoHierarchies.R | 243 +---------- SSBtools-1.4.6/SSBtools/R/DataDummyHierarchies.R |only SSBtools-1.4.6/SSBtools/R/DataFrameToMatrix.R | 104 ---- SSBtools-1.4.6/SSBtools/R/DimList2Hierarchy.R |only SSBtools-1.4.6/SSBtools/R/Div.R | 203 +++------ SSBtools-1.4.6/SSBtools/R/DummyHierarchies.R |only SSBtools-1.4.6/SSBtools/R/FactorLevCorr.R |only SSBtools-1.4.6/SSBtools/R/FindCommonCells.R |only SSBtools-1.4.6/SSBtools/R/FindDimLists.R |only SSBtools-1.4.6/SSBtools/R/FindHierarchies.R |only SSBtools-1.4.6/SSBtools/R/FindTableGroup.R |only SSBtools-1.4.6/SSBtools/R/GaussSuppression.R | 27 - SSBtools-1.4.6/SSBtools/R/HierarchicalGroups.R |only SSBtools-1.4.6/SSBtools/R/HierarchyCompute.R | 313 +-------------- SSBtools-1.4.6/SSBtools/R/MakeFreq.R |only SSBtools-1.4.6/SSBtools/R/MakeHierFormula.R | 40 - SSBtools-1.4.6/SSBtools/R/Match.R |only SSBtools-1.4.6/SSBtools/R/ModelMatrix.R | 21 - SSBtools-1.4.6/SSBtools/R/RoundWhole.R |only SSBtools-1.4.6/SSBtools/R/RowGroups.R | 162 ------- SSBtools-1.4.6/SSBtools/R/SSBtoolsData.R | 68 +++ SSBtools-1.4.6/SSBtools/R/SortRows.R |only SSBtools-1.4.6/SSBtools/R/UniqueSeq.R |only SSBtools-1.4.6/SSBtools/R/aggregate_multiple_fun.R | 32 + SSBtools-1.4.6/SSBtools/R/inc_default.R |only SSBtools-1.4.6/SSBtools/R/model_aggregate.R | 3 SSBtools-1.4.6/SSBtools/man/AutoHierarchies.Rd | 47 +- SSBtools-1.4.6/SSBtools/man/CharacterDataFrame.Rd | 2 SSBtools-1.4.6/SSBtools/man/CrossCodeFrames.Rd | 2 SSBtools-1.4.6/SSBtools/man/DataDummyHierarchy.Rd | 2 SSBtools-1.4.6/SSBtools/man/DimList2Hierarchy.Rd | 6 SSBtools-1.4.6/SSBtools/man/DimList2Hrc.Rd | 7 SSBtools-1.4.6/SSBtools/man/DummyHierarchy.Rd | 2 SSBtools-1.4.6/SSBtools/man/FactorLevCorr.Rd | 2 SSBtools-1.4.6/SSBtools/man/FindCommonCells.Rd | 2 SSBtools-1.4.6/SSBtools/man/FindDimLists.Rd | 10 SSBtools-1.4.6/SSBtools/man/FindHierarchies.Rd |only SSBtools-1.4.6/SSBtools/man/FindTableGroup.Rd | 2 SSBtools-1.4.6/SSBtools/man/ForceCharacterDataFrame.Rd | 2 SSBtools-1.4.6/SSBtools/man/ForceFactorDataFrame.Rd | 2 SSBtools-1.4.6/SSBtools/man/HierarchicalGroups.Rd | 11 SSBtools-1.4.6/SSBtools/man/HierarchicalGroups2.Rd | 2 SSBtools-1.4.6/SSBtools/man/HierarchicalGroups3.Rd | 2 SSBtools-1.4.6/SSBtools/man/Hierarchy2Formula.Rd | 8 SSBtools-1.4.6/SSBtools/man/HierarchyFix.Rd | 1 SSBtools-1.4.6/SSBtools/man/MakeFreq.Rd | 2 SSBtools-1.4.6/SSBtools/man/Match.Rd | 2 SSBtools-1.4.6/SSBtools/man/ModelMatrix.Rd | 8 SSBtools-1.4.6/SSBtools/man/Model_Matrix.Rd | 9 SSBtools-1.4.6/SSBtools/man/RoundWhole.Rd | 2 SSBtools-1.4.6/SSBtools/man/SSBtoolsData.Rd | 8 SSBtools-1.4.6/SSBtools/man/SortRows.Rd | 21 - SSBtools-1.4.6/SSBtools/man/UniqueSeq.Rd | 2 SSBtools-1.4.6/SSBtools/man/aggregate_multiple_fun.Rd | 7 SSBtools-1.4.6/SSBtools/man/inc_default.Rd |only 63 files changed, 475 insertions(+), 1026 deletions(-)
Title: Mediation using MZIP Model
Description: We implement functions allowing for mediation analysis to be performed in cases where the mediator is a count variable with excess zeroes. First a function is provided allowing users to perform analysis for zero-inflated count variables using the marginalized zero-inflated Poisson (MZIP) model (Long et al. 2014 <DOI:10.1002/sim.6293>). Using the counterfactual approach to mediation and MZIP we can obtain natural direct and indirect effects for the overall population. Using delta method processes variance estimation can be performed instantaneously. Alternatively, bootstrap standard errors can be used. We also provide functions for cases with exposure-mediator interactions with four-way decomposition of total effect.
Author: Andrew Sims [aut, cre] ,
Dustin Long [aut],
Hemant Tiwari [aut],
Leann Long [aut]
Maintainer: Andrew Sims <ams329@uab.edu>
Diff between mzipmed versions 1.3.0 dated 2023-04-16 and 1.3.5 dated 2023-05-27
DESCRIPTION | 6 - MD5 | 20 ++-- R/mzipmed_package.R | 134 ++++++++++++++--------------- inst/doc/mzipmed-vignette.Rmd | 48 ++++++---- inst/doc/mzipmed-vignette.html | 189 +++++++++++++++++++++-------------------- man/mzip.Rd | 4 man/zioutbinmed.Rd | 18 +-- man/zioutbinmedint.Rd | 34 +++---- man/zioutlmmed.Rd | 18 +-- man/zioutlmmedint.Rd | 34 +++---- vignettes/mzipmed-vignette.Rmd | 48 ++++++---- 11 files changed, 295 insertions(+), 258 deletions(-)
Title: Read and Write 'jamovi' Files ('.omv')
Description: The free and open a statistical spreadsheet 'jamovi'
(<https://www.jamovi.org>) aims to make statistical analyses easy and
intuitive. 'jamovi' produces syntax that can directly be used in R (in
connection with the R-package 'jmv'). Having import / export routines for
the data files 'jamovi' produces ('.omv') permits an easy transfer of
analyses between 'jamovi' and R.
Author: Sebastian Jentschke [aut, cre]
Maintainer: Sebastian Jentschke <sebastian.jentschke@uib.no>
Diff between jmvReadWrite versions 0.3.4 dated 2023-05-06 and 0.3.5 dated 2023-05-27
DESCRIPTION | 12 ++++++------ MD5 | 12 +++++++----- NEWS.md | 6 ++++++ R/merge_rows_omv.R | 34 ++++++++++++++++++++++------------ README.md | 14 ++++++++++---- inst/CITATION |only inst/doc/jmvReadWrite.html | 8 ++++---- man/figures |only 8 files changed, 55 insertions(+), 31 deletions(-)
Title: Bayesian Additive Regression Trees for Confounder Selection
Description: Fit Bayesian Regression Additive Trees (BART) models to
select true confounders from a large set of potential confounders and
to estimate average treatment effect. For more information, see Kim et
al. (2023) <doi:10.1111/biom.13833>.
Author: Yeonghoon Yoo [aut, cre]
Maintainer: Yeonghoon Yoo <yooyh.stat@gmail.com>
Diff between bartcs versions 1.1.0 dated 2023-05-01 and 1.2.0 dated 2023-05-27
DESCRIPTION | 6 +-- MD5 | 32 +++++++++---------- NEWS.md | 4 ++ R/bart.R | 8 +--- R/print.R | 2 - R/separate_bart.R | 36 ++++++++++----------- R/single_bart.R | 36 ++++++++++----------- R/summary.R | 8 ++-- R/trace_plot.R | 82 ++++++++++++++++++++++++-------------------------- inst/doc/bartcs.R | 4 +- inst/doc/bartcs.Rmd | 4 +- inst/doc/bartcs.html | 8 ++-- man/bart.Rd | 8 +--- src/separate_bart.cpp | 17 ++++------ src/single_bart.cpp | 12 +++---- vignettes/article.pdf |binary vignettes/bartcs.Rmd | 4 +- 17 files changed, 131 insertions(+), 140 deletions(-)
Title: Event Prediction
Description: Predicts enrollment and events at the design or analysis stage using specified enrollment and time-to-event models through simulations.
Author: Kaifeng Lu [aut, cre]
Maintainer: Kaifeng Lu <kaifenglu@gmail.com>
Diff between eventPred versions 0.1.3 dated 2023-05-15 and 0.1.4 dated 2023-05-27
DESCRIPTION | 10 MD5 | 50 - NEWS.md | 7 R/data.R | 6 R/eventPred-package.R | 18 R/fitDropout.R | 299 ++++--- R/fitEnrollment.R | 23 R/fitEvent.R | 439 ++++++----- R/getPrediction.R | 842 +++++++++++++--------- R/predictEnrollment.R | 434 ++++++++--- R/predictEvent.R | 1780 +++++++++++++++++++++++++---------------------- R/summarizeObserved.R | 414 ++++++++-- data/finalData.rda |binary data/interimData1.rda |binary data/interimData2.rda |binary man/eventPred-package.Rd | 17 man/finalData.Rd | 2 man/fitDropout.Rd | 16 man/fitEnrollment.Rd | 1 man/fitEvent.Rd | 20 man/getPrediction.Rd | 75 + man/interimData1.Rd | 4 man/interimData2.Rd | 2 man/predictEnrollment.Rd | 26 man/predictEvent.Rd | 60 - man/summarizeObserved.Rd | 18 26 files changed, 2778 insertions(+), 1785 deletions(-)
Title: Package for Community Ecology and Suitability Analysis
Description: Graphical User Interface (via the R-Commander) and utility functions (often based on the vegan package) for statistical analysis of biodiversity and ecological communities, including species accumulation curves, diversity indices, Renyi profiles, GLMs for analysis of species abundance and presence-absence, distance matrices, Mantel tests, and cluster, constrained and unconstrained ordination analysis. A book on biodiversity and community ecology analysis is available for free download from the website. In 2012, methods for (ensemble) suitability modelling and mapping were expanded in the package.
Author: Roeland Kindt [cre, aut]
Maintainer: Roeland Kindt <RoelandCEKindt@gmail.com>
Diff between BiodiversityR versions 2.15-1 dated 2023-01-06 and 2.15-2 dated 2023-05-27
DESCRIPTION | 8 ++++---- MD5 | 20 ++++++++++---------- NAMESPACE | 2 +- R/ensemble.envirem.R | 3 ++- R/ensemble.evaluate.R | 23 +++++++++++++++++++++-- README.md | 2 +- inst/CITATION | 34 +++++++++++++++++----------------- inst/ChangeLog | 14 ++++++++++++++ man/ensemble.concave.Rd | 2 +- man/ensemble.envirem.Rd | 9 +++++---- man/ensemble.evaluate.Rd | 35 +++++++++++++++++++++++++++-------- 11 files changed, 103 insertions(+), 49 deletions(-)
Title: Load US Census Boundary and Attribute Data as 'tidyverse' and
'sf'-Ready Data Frames
Description: An integrated R interface to several United States Census Bureau
APIs (<https://www.census.gov/data/developers/data-sets.html>) and the US Census Bureau's
geographic boundary files. Allows R users to return Census and ACS data as
tidyverse-ready data frames, and optionally returns a list-column with feature geometry for mapping
and spatial analysis.
Author: Kyle Walker [aut, cre],
Matt Herman [aut],
Kris Eberwein [ctb]
Maintainer: Kyle Walker <kyle@walker-data.com>
Diff between tidycensus versions 1.3.4 dated 2023-05-19 and 1.4 dated 2023-05-27
DESCRIPTION | 8 ++--- MD5 | 14 ++++----- NEWS.md | 6 ++++ R/census.R | 73 +++++++++++++++++++++++++++++++++++++++----------- R/helpers.R | 19 +++++++++++-- R/search_variables.R | 6 ++-- man/get_decennial.Rd | 15 ++++------ man/load_variables.Rd | 10 +++--- 8 files changed, 107 insertions(+), 44 deletions(-)
Title: 'Rcpp' Integration for the 'Armadillo' Templated Linear Algebra
Library
Description: 'Armadillo' is a templated C++ linear algebra library (by Conrad
Sanderson) that aims towards a good balance between speed and ease of
use. Integer, floating point and complex numbers are supported, as
well as a subset of trigonometric and statistics functions. Various
matrix decompositions are provided through optional integration with
LAPACK and ATLAS libraries. The 'RcppArmadillo' package includes the
header files from the templated 'Armadillo' library. Thus users do
not need to install 'Armadillo' itself in order to use
'RcppArmadillo'. From release 7.800.0 on, 'Armadillo' is licensed
under Apache License 2; previous releases were under licensed as MPL
2.0 from version 3.800.0 onwards and LGPL-3 prior to that;
'RcppArmadillo' (the 'Rcpp' bindings/bridge to Armadillo) is licensed
under the GNU GPL version 2 or later, as is the rest of 'Rcpp'.
Author: Dirk Eddelbuettel, Romain Francois, Doug Bates, Binxiang Ni, and Conrad Sanderson
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppArmadillo versions 0.12.2.0.0 dated 2023-04-05 and 0.12.4.0.0 dated 2023-05-27
ChangeLog | 16 + DESCRIPTION | 8 MD5 | 75 ++-- README.md | 2 build/partial.rdb |binary build/vignette.rds |binary configure | 18 - configure.ac | 2 inst/NEWS.Rd | 14 inst/doc/RcppArmadillo-intro.pdf |binary inst/doc/RcppArmadillo-sparseMatrix.pdf |binary inst/include/armadillo | 7 inst/include/armadillo_bits/Cube_meat.hpp | 20 - inst/include/armadillo_bits/Mat_meat.hpp | 20 - inst/include/armadillo_bits/SpMat_meat.hpp | 12 inst/include/armadillo_bits/arma_str.hpp | 315 +++++++------------- inst/include/armadillo_bits/arma_version.hpp | 4 inst/include/armadillo_bits/diskio_meat.hpp | 6 inst/include/armadillo_bits/fft_engine_fftw3.hpp | 2 inst/include/armadillo_bits/field_meat.hpp | 20 - inst/include/armadillo_bits/fn_conv_to.hpp | 20 - inst/include/armadillo_bits/fn_norm.hpp | 46 ++ inst/include/armadillo_bits/fn_stddev.hpp | 6 inst/include/armadillo_bits/fn_var.hpp | 12 inst/include/armadillo_bits/fn_vecnorm.hpp |only inst/include/armadillo_bits/op_norm2est_bones.hpp |only inst/include/armadillo_bits/op_norm2est_meat.hpp |only inst/include/armadillo_bits/op_normalise_meat.hpp | 6 inst/include/armadillo_bits/op_stddev_bones.hpp | 8 inst/include/armadillo_bits/op_stddev_meat.hpp | 42 +- inst/include/armadillo_bits/op_var_bones.hpp | 5 inst/include/armadillo_bits/op_var_meat.hpp | 42 +- inst/include/armadillo_bits/op_vecnorm_bones.hpp |only inst/include/armadillo_bits/op_vecnorm_meat.hpp |only inst/include/armadillo_bits/sp_auxlib_meat.hpp | 10 inst/include/armadillo_bits/spop_norm_meat.hpp | 2 inst/include/armadillo_bits/spop_normalise_meat.hpp | 4 inst/include/armadillo_bits/spop_vecnorm_bones.hpp |only inst/include/armadillo_bits/spop_vecnorm_meat.hpp |only inst/include/armadillo_bits/subview_cube_meat.hpp | 2 inst/include/armadillo_bits/subview_field_meat.hpp | 2 inst/include/armadillo_bits/subview_meat.hpp | 2 42 files changed, 399 insertions(+), 351 deletions(-)
Title: Mixture of Markov Chains with Support of Higher Orders and
Multiple Sequences
Description: Fit mixture of Markov chains of higher orders from multiple
sequences. It is also compatible with ordinary 1-component, 1-order or
single-sequence Markov chains. Various utility functions are provided
to derive transition patterns, transition probabilities per component
and component priors. In addition, print(), predict() and component
extracting/replacing methods are also defined as a convention of
mixture models.
Author: Xiurui Zhu [aut, cre]
Maintainer: Xiurui Zhu <zxr6@163.com>
Diff between markovmix versions 0.1.1 dated 2023-04-25 and 0.1.2 dated 2023-05-27
DESCRIPTION | 6 - MD5 | 45 +++++++------ NAMESPACE | 4 + NEWS.md | 23 ++++++ R/RcppExports.R | 49 ++++++++++++++ R/data.R | 6 - R/markov_mix.R | 12 ++- R/markov_mix_utils.R | 112 ++++++++++++++++++++++++++++----- R/markovmix-package.R | 11 ++- README.md | 9 +- inst |only man/Extract.MarkovMix.Rd | 21 +++++- man/get_counts.Rd |only man/get_order.Rd |only man/get_prior.Rd | 17 ++++- man/get_prob.Rd | 17 ++++- man/get_states.Rd |only man/get_states_mat.Rd | 17 ++++- man/markovmix-package.Rd | 11 ++- man/predict.MarkovMix.Rd | 4 - man/restate.Rd | 7 +- src/RcppExports.cpp | 80 +++++++++++++++++++++-- src/fit_markov.cpp | 47 +++++++++++++ tests/testthat/test-markov_mix.R | 8 +- tests/testthat/test-markov_mix_utils.R | 26 +++++-- 25 files changed, 450 insertions(+), 82 deletions(-)
Title: Calibrates and Reweights Units in Samples
Description: Provides user-friendly tools for calibration in survey sampling.
The package is production-oriented, and its interface is inspired by the famous
popular macro 'Calmar' for SAS, so that 'Calmar' users can quickly get used to
'icarus'. In addition to calibration (with linear, raking and logit methods),
'icarus' features functions for calibration on tight bounds and penalized
calibration.
Author: Antoine Rebecq [aut, cre]
Maintainer: Antoine Rebecq <antoine.rebecq@m4x.org>
Diff between icarus versions 0.3.1 dated 2019-08-20 and 0.3.2 dated 2023-05-27
icarus-0.3.1/icarus/data/datalist |only icarus-0.3.2/icarus/DESCRIPTION | 9 +- icarus-0.3.2/icarus/MD5 | 35 +++++------ icarus-0.3.2/icarus/R/calibration.R | 10 +-- icarus-0.3.2/icarus/R/calmarFunctions.R | 50 ++++++++++++---- icarus-0.3.2/icarus/README.md | 2 icarus-0.3.2/icarus/inst/CITATION | 17 ++--- icarus-0.3.2/icarus/man/addMargin.Rd | 9 ++ icarus-0.3.2/icarus/man/calWeights_movies.Rd | 6 + icarus-0.3.2/icarus/man/calibration.Rd | 36 ++++++++--- icarus-0.3.2/icarus/man/calibrationMarginStats.Rd | 12 ++- icarus-0.3.2/icarus/man/dataPop.Rd | 6 + icarus-0.3.2/icarus/man/data_employees.Rd | 6 + icarus-0.3.2/icarus/man/marginStats.Rd | 11 ++- icarus-0.3.2/icarus/man/poptest_calmar.Rd | 6 + icarus-0.3.2/icarus/man/poptest_calmar_nr.Rd | 6 + icarus-0.3.2/icarus/man/regroupCalibrationModalities.Rd | 9 ++ icarus-0.3.2/icarus/man/table_margins_1.Rd | 4 - icarus-0.3.2/icarus/man/table_margins_2.Rd | 4 - 19 files changed, 159 insertions(+), 79 deletions(-)
Title: Check User-Supplied Function Arguments
Description: For developers to check user-supplied function arguments. It
is designed to be simple, fast and customizable. Error messages
follow the tidyverse style guide.
Author: Joe Thorley [aut, cre] ,
Kirill Mueller [aut] ,
Ayla Pearson [aut] ,
Nadine Hussein [ctb] ,
Evan Amies-Galonski [ctb] ,
Poisson Consulting [cph, fnd]
Maintainer: Joe Thorley <joe@poissonconsulting.ca>
Diff between chk versions 0.8.1 dated 2022-08-26 and 0.9.0 dated 2023-05-27
DESCRIPTION | 14 +-- MD5 | 83 +++++++++--------- NAMESPACE | 2 NEWS.md | 11 ++ R/check-dim.R | 2 R/chk-compatible-lengths.R |only R/chk-count.R | 3 R/chk-equal.R | 6 - R/chk-equivalent.R | 6 - R/chk-identical.R | 6 - R/chk-join.R | 2 R/chk-length.R | 16 +-- R/chk-missing.R | 8 + R/chk-not-missing.R | 8 + R/chk-null-or.R | 10 +- R/chk-range.R | 26 ++++- R/chk-sorted.R | 4 R/chkor-vld.R | 3 R/err.R | 24 +++-- R/internal.R | 2 R/template.R | 2 R/utils.R | 2 README.md | 12 +- build/vignette.rds |binary inst/doc/chk-families.html | 14 +-- inst/doc/chk.html | 124 ++++++++++++++------------- man/chk-package.Rd | 2 man/chk_compatible_lengths.Rd |only man/chk_length.Rd | 10 +- man/chk_missing.Rd | 8 + man/chk_not_missing.Rd | 8 + man/chk_range.Rd | 12 ++ man/chk_sorted.Rd | 2 man/err.Rd | 15 ++- man/expect_chk_error.Rd | 19 +++- man/params.Rd | 4 tests/testthat/test-check-dim.R | 3 tests/testthat/test-chk-compatible-lengths.R |only tests/testthat/test-chk-length.R | 3 tests/testthat/test-chk-null-or.R | 1 tests/testthat/test-chk-range.R | 6 + tests/testthat/test-chk-sorted.R | 2 tests/testthat/test-chk-valid-name.R | 2 tests/testthat/test-err.R | 15 +++ 44 files changed, 318 insertions(+), 184 deletions(-)
Title: Framework for the Visualization of Distributional Regression
Models
Description: Functions for visualizing distributional regression models fitted using the 'gamlss', 'bamlss' or 'betareg' R package. The core of the package consists of a 'shiny' application, where the model results can be interactively explored and visualized.
Author: Stanislaus Stadlmann [cre, aut]
Maintainer: Stanislaus Stadlmann <stanislaus@stadlmann.cm>
Diff between distreg.vis versions 1.7.3 dated 2022-02-07 and 1.7.4 dated 2023-05-26
DESCRIPTION | 10 +++++----- MD5 | 8 ++++---- R/external_function.R | 2 +- R/plot_moments.R | 8 ++++++++ R/vis.R | 12 +++++++----- 5 files changed, 25 insertions(+), 15 deletions(-)
Title: Easily Create Production-Ready Rich Text Format (RTF) Table and
Figure
Description: Create production-ready Rich Text Format (RTF) table and figure
with flexible format.
Author: Yilong Zhang [aut, cre],
Siruo Wang [aut],
Simiao Ye [aut],
Fansen Kong [aut],
Brian Lang [aut],
Nan Xiao [ctb],
Madhusudhan Ginnaram [ctb],
Ruchitbhai Patel [ctb],
Huei-Ling Chen [ctb],
Peikun Wu [ctb],
Uday Preetham Palukuru [ctb],
Daniel Woodie [c [...truncated...]
Maintainer: Yilong Zhang <elong0527@gmail.com>
Diff between r2rtf versions 1.0.2 dated 2023-05-01 and 1.0.3 dated 2023-05-26
r2rtf-1.0.2/r2rtf/man/as_rtf_colheader.Rd |only r2rtf-1.0.2/r2rtf/man/as_rtf_color.Rd |only r2rtf-1.0.2/r2rtf/man/as_rtf_end.Rd |only r2rtf-1.0.2/r2rtf/man/as_rtf_font.Rd |only r2rtf-1.0.2/r2rtf/man/as_rtf_footnote.Rd |only r2rtf-1.0.2/r2rtf/man/as_rtf_init.Rd |only r2rtf-1.0.2/r2rtf/man/as_rtf_margin.Rd |only r2rtf-1.0.2/r2rtf/man/as_rtf_new_page.Rd |only r2rtf-1.0.2/r2rtf/man/as_rtf_page.Rd |only r2rtf-1.0.2/r2rtf/man/as_rtf_pageby.Rd |only r2rtf-1.0.2/r2rtf/man/as_rtf_paragraph.Rd |only r2rtf-1.0.2/r2rtf/man/as_rtf_source.Rd |only r2rtf-1.0.2/r2rtf/man/as_rtf_subline.Rd |only r2rtf-1.0.2/r2rtf/man/as_rtf_table.Rd |only r2rtf-1.0.2/r2rtf/man/as_rtf_title.Rd |only r2rtf-1.0.2/r2rtf/man/border_type.Rd |only r2rtf-1.0.2/r2rtf/man/cell_size.Rd |only r2rtf-1.0.2/r2rtf/man/check_args.Rd |only r2rtf-1.0.2/r2rtf/man/color_table.Rd |only r2rtf-1.0.2/r2rtf/man/convert.Rd |only r2rtf-1.0.2/r2rtf/man/fig_format.Rd |only r2rtf-1.0.2/r2rtf/man/font_format.Rd |only r2rtf-1.0.2/r2rtf/man/font_type.Rd |only r2rtf-1.0.2/r2rtf/man/footnote_source_space.Rd |only r2rtf-1.0.2/r2rtf/man/inch_to_twip.Rd |only r2rtf-1.0.2/r2rtf/man/justification.Rd |only r2rtf-1.0.2/r2rtf/man/match_arg.Rd |only r2rtf-1.0.2/r2rtf/man/nrow_paragraph.Rd |only r2rtf-1.0.2/r2rtf/man/nrow_table.Rd |only r2rtf-1.0.2/r2rtf/man/obj_rtf_border.Rd |only r2rtf-1.0.2/r2rtf/man/obj_rtf_text.Rd |only r2rtf-1.0.2/r2rtf/man/rtf_by_subline.Rd |only r2rtf-1.0.2/r2rtf/man/rtf_convert_format.Rd |only r2rtf-1.0.2/r2rtf/man/rtf_encode_figure.Rd |only r2rtf-1.0.2/r2rtf/man/rtf_encode_list.Rd |only r2rtf-1.0.2/r2rtf/man/rtf_encode_table.Rd |only r2rtf-1.0.2/r2rtf/man/rtf_group_by_enhance.Rd |only r2rtf-1.0.2/r2rtf/man/rtf_nline_matrix.Rd |only r2rtf-1.0.2/r2rtf/man/rtf_nline_vector.Rd |only r2rtf-1.0.2/r2rtf/man/rtf_nrow.Rd |only r2rtf-1.0.2/r2rtf/man/rtf_pageby.Rd |only r2rtf-1.0.2/r2rtf/man/rtf_paragraph.Rd |only r2rtf-1.0.2/r2rtf/man/rtf_strwidth.Rd |only r2rtf-1.0.2/r2rtf/man/rtf_subset.Rd |only r2rtf-1.0.2/r2rtf/man/rtf_table_content.Rd |only r2rtf-1.0.2/r2rtf/man/rtf_text.Rd |only r2rtf-1.0.2/r2rtf/man/set_margin.Rd |only r2rtf-1.0.2/r2rtf/man/spacing.Rd |only r2rtf-1.0.2/r2rtf/man/update_border_first.Rd |only r2rtf-1.0.2/r2rtf/man/update_border_last.Rd |only r2rtf-1.0.2/r2rtf/man/update_cellx.Rd |only r2rtf-1.0.2/r2rtf/man/vertical_justification.Rd |only r2rtf-1.0.2/r2rtf/man/write_rtf_para.Rd |only r2rtf-1.0.3/r2rtf/DESCRIPTION | 6 r2rtf-1.0.3/r2rtf/MD5 | 113 ++-------- r2rtf-1.0.3/r2rtf/NEWS.md | 7 r2rtf-1.0.3/r2rtf/R/as_rtf_pageby.R | 28 +- r2rtf-1.0.3/r2rtf/R/as_rtf_paragraph.R | 1 r2rtf-1.0.3/r2rtf/R/as_rtf_table.R | 1 r2rtf-1.0.3/r2rtf/R/check_args.R | 1 r2rtf-1.0.3/r2rtf/R/content_create.R | 12 + r2rtf-1.0.3/r2rtf/R/conversion.R | 3 r2rtf-1.0.3/r2rtf/R/dictionary.R | 8 r2rtf-1.0.3/r2rtf/R/footnote_source_space.R | 1 r2rtf-1.0.3/r2rtf/R/match_arg.R | 1 r2rtf-1.0.3/r2rtf/R/obj_rtf_border.R | 2 r2rtf-1.0.3/r2rtf/R/obj_rtf_text.R | 2 r2rtf-1.0.3/r2rtf/R/rtf_by_subline.R | 1 r2rtf-1.0.3/r2rtf/R/rtf_convert_format.R | 8 r2rtf-1.0.3/r2rtf/R/rtf_encode_figure.R | 1 r2rtf-1.0.3/r2rtf/R/rtf_encode_list.R | 1 r2rtf-1.0.3/r2rtf/R/rtf_encode_table.R | 1 r2rtf-1.0.3/r2rtf/R/rtf_group_by_enhance.R | 1 r2rtf-1.0.3/r2rtf/R/rtf_nrow.R | 10 r2rtf-1.0.3/r2rtf/R/rtf_pageby.R | 1 r2rtf-1.0.3/r2rtf/R/rtf_paragraph.R | 1 r2rtf-1.0.3/r2rtf/R/rtf_strwidth.R | 2 r2rtf-1.0.3/r2rtf/R/rtf_subset.R | 2 r2rtf-1.0.3/r2rtf/R/rtf_table_content.R | 1 r2rtf-1.0.3/r2rtf/R/rtf_text.R | 1 r2rtf-1.0.3/r2rtf/R/set_margin.R | 1 r2rtf-1.0.3/r2rtf/R/update_border.R | 4 r2rtf-1.0.3/r2rtf/R/write_rtf.R | 1 r2rtf-1.0.3/r2rtf/tests/testthat/test-independent-testing-rtf_encode_list.R | 17 + 84 files changed, 144 insertions(+), 96 deletions(-)
Title: Search Contributed R Packages, Sort by Package
Description: Search contributed R packages, sort by package.
Author: Spencer Graves [cre, aut, cph],
Sundar Dorai-Raj [aut], and Romain Francois [ctb]
Maintainer: Spencer Graves <spencer.graves@prodsyse.com>
Diff between sos versions 2.1-4 dated 2022-04-01 and 2.1-7 dated 2023-05-26
sos-2.1-4/sos/NEWS |only sos-2.1-7/sos/DESCRIPTION | 8 sos-2.1-7/sos/MD5 | 100 - sos-2.1-7/sos/NAMESPACE | 62 sos-2.1-7/sos/NEWS.md |only sos-2.1-7/sos/R/CRAN.R | 76 - sos-2.1-7/sos/R/Extract.findFn.R | 36 sos-2.1-7/sos/R/Ops.findFn.R | 68 - sos-2.1-7/sos/R/PackageSum2.R | 290 ++-- sos-2.1-7/sos/R/PackageSummary.R | 108 - sos-2.1-7/sos/R/back2ForwardSlash.R | 8 sos-2.1-7/sos/R/findFn.R | 542 ++++---- sos-2.1-7/sos/R/findFn2.R | 182 +- sos-2.1-7/sos/R/grepFn.R | 32 sos-2.1-7/sos/R/hits.R | 14 sos-2.1-7/sos/R/installPackages.R | 118 - sos-2.1-7/sos/R/intersectFindFn.R | 132 - sos-2.1-7/sos/R/packageSum.R | 122 - sos-2.1-7/sos/R/print.findFn.R | 550 ++++---- sos-2.1-7/sos/R/print.packageSum.R | 570 ++++---- sos-2.1-7/sos/R/sortFindFn.R | 108 - sos-2.1-7/sos/R/summary.findFn.R | 94 - sos-2.1-7/sos/R/unionFindFn.R | 130 - sos-2.1-7/sos/R/writeFindFn2xls.R | 334 ++--- sos-2.1-7/sos/README.md | 144 +- sos-2.1-7/sos/build/vignette.rds |binary sos-2.1-7/sos/inst/WORDLIST | 137 +- sos-2.1-7/sos/inst/brew/default/results.brew.html | 232 +-- sos-2.1-7/sos/inst/brew/iframe/results.brew.html | 190 +- sos-2.1-7/sos/inst/doc/sos.R | 393 ++--- sos-2.1-7/sos/inst/doc/sos.Rnw | 1124 ++++++++--------- sos-2.1-7/sos/inst/doc/sos.pdf |binary sos-2.1-7/sos/inst/js/sorttable.js | 984 +++++++------- sos-2.1-7/sos/inst/tests/example_back2ForwardSlash.txt | 4 sos-2.1-7/sos/man/CRAN.Rd | 214 +-- sos-2.1-7/sos/man/Extract.findFn.Rd | 125 - sos-2.1-7/sos/man/PackageSum2.Rd | 278 ++-- sos-2.1-7/sos/man/PackageSummary.Rd | 177 +- sos-2.1-7/sos/man/back2ForwardSlash.Rd | 160 +- sos-2.1-7/sos/man/findFn.Rd | 498 +++---- sos-2.1-7/sos/man/grepFn.Rd | 122 - sos-2.1-7/sos/man/hits.Rd | 104 - sos-2.1-7/sos/man/installPackages.Rd | 208 +-- sos-2.1-7/sos/man/packageSum.Rd | 266 ++-- sos-2.1-7/sos/man/print.findFn.Rd | 163 +- sos-2.1-7/sos/man/print.packageSum.Rd | 188 +- sos-2.1-7/sos/man/sortFindFn.Rd | 96 - sos-2.1-7/sos/man/summary.findFn.Rd | 198 +- sos-2.1-7/sos/man/unionFindFn.Rd | 228 +-- sos-2.1-7/sos/man/writeFindFn2xls.Rd | 137 +- sos-2.1-7/sos/vignettes/RJournal.sty | 466 +++---- sos-2.1-7/sos/vignettes/sos.Rnw | 1124 ++++++++--------- 52 files changed, 5838 insertions(+), 5806 deletions(-)
Title: Enhancing the 'parallel' Package
Description: Utility functions that enhance the 'parallel' package and support the built-in parallel backends of the 'future' package. For example, availableCores() gives the number of CPU cores available to your R process as given by the operating system, 'cgroups' and Linux containers, R options, and environment variables, including those set by job schedulers on high-performance compute clusters. If none is set, it will fall back to parallel::detectCores(). Another example is makeClusterPSOCK(), which is backward compatible with parallel::makePSOCKcluster() while doing a better job in setting up remote cluster workers without the need for configuring the firewall to do port-forwarding to your local computer.
Author: Henrik Bengtsson [aut, cre, cph]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between parallelly versions 1.35.0 dated 2023-03-22 and 1.36.0 dated 2023-05-26
DESCRIPTION | 6 MD5 | 43 +++--- NAMESPACE | 7 NEWS.md | 47 ++++++ R/RichSOCKcluster.R | 52 ++++++- R/as.cluster.R | 7 R/cgroups.R | 2 R/cloneNode.R |only R/isLocalhostNode.R | 5 R/isNodeAlive.R | 123 ++++++++++++++++- R/killNode.R | 117 +++++++++++++++- R/launchNodePSOCK.R |only R/makeClusterPSOCK.R | 8 - R/makeNodePSOCK.R | 325 +++++++++++----------------------------------- R/options.R | 16 ++ R/supportsMulticore.R | 43 ++++-- R/utils,cluster.R | 6 R/utils.R | 12 + README.md | 6 man/as.cluster.Rd | 3 man/cloneNode.Rd |only man/isNodeAlive.Rd | 5 man/makeClusterPSOCK.Rd | 24 +-- man/parallelly.options.Rd | 14 + 24 files changed, 542 insertions(+), 329 deletions(-)
Title: Tidy Standardized Mean Differences
Description: Tidy standardized mean differences ('SMDs'). 'tidysmd' uses
the 'smd' package to calculate standardized mean differences for
variables in a data frame, returning the results in a tidy format.
Author: Malcolm Barrett [aut, cre]
Maintainer: Malcolm Barrett <malcolmbarrett@gmail.com>
Diff between tidysmd versions 0.1.1 dated 2022-08-05 and 0.2.0 dated 2023-05-26
DESCRIPTION | 20 ++-- MD5 | 37 +++++--- NAMESPACE | 6 + NEWS.md | 9 + R/geom_love.R |only R/matches.R |only R/tidysmd-package.R | 2 R/tidysmd.R | 120 +++++++++++++++++++------- R/utils.R | 12 ++ README.md | 142 +++++++++++++++++++++++++------ data/nhefs_weights.rda |binary inst/WORDLIST | 4 man/bind_matches.Rd |only man/figures/README-unnamed-chunk-4-1.png |binary man/figures/README-unnamed-chunk-5-1.png |only man/figures/README-unnamed-chunk-7-1.png |only man/figures/README-unnamed-chunk-9-1.png |only man/geom_love.Rd |only man/tidy_smd.Rd | 29 +++++- man/tidysmd-package.Rd | 6 - tests/testthat/_snaps |only tests/testthat/test-geom_love.R |only tests/testthat/test-matches.R |only tests/testthat/test-tidysmd.R | 35 +++++-- 24 files changed, 318 insertions(+), 104 deletions(-)
Title: Spatial Statistical Modeling and Prediction
Description: Fit, summarize, and predict for a variety of spatial statistical models applied to point-referenced and areal (lattice) data. Parameters are estimated using various methods. Additional modeling features include anisotropy, non-spatial random effects, partition factors, big data approaches, and more. Model-fit statistics are used to summarize, visualize, and compare models. Predictions at unobserved locations are readily obtainable. For additional details, see Dumelle et al. (2023) <doi:10.1371/journal.pone.0282524>.
Author: Michael Dumelle [aut, cre] ,
Matt Higham [aut],
Jay M. Ver Hoef [aut]
Maintainer: Michael Dumelle <Dumelle.Michael@epa.gov>
Diff between spmodel versions 0.3.0 dated 2023-03-10 and 0.4.0 dated 2023-05-26
spmodel-0.3.0/spmodel/R/PseudoR2.R |only spmodel-0.3.0/spmodel/tests/testthat/test-AIC.R |only spmodel-0.3.0/spmodel/tests/testthat/test-PseudoR2.R |only spmodel-0.3.0/spmodel/tests/testthat/test-anova.R |only spmodel-0.3.0/spmodel/tests/testthat/test-augment.R |only spmodel-0.3.0/spmodel/tests/testthat/test-check_optim_method.R |only spmodel-0.3.0/spmodel/tests/testthat/test-coef.R |only spmodel-0.3.0/spmodel/tests/testthat/test-confint.R |only spmodel-0.3.0/spmodel/tests/testthat/test-cooks.distance.R |only spmodel-0.3.0/spmodel/tests/testthat/test-covmatrix.R |only spmodel-0.3.0/spmodel/tests/testthat/test-deviance.R |only spmodel-0.3.0/spmodel/tests/testthat/test-esv.R |only spmodel-0.3.0/spmodel/tests/testthat/test-fitted.R |only spmodel-0.3.0/spmodel/tests/testthat/test-formula.R |only spmodel-0.3.0/spmodel/tests/testthat/test-generics.R |only spmodel-0.3.0/spmodel/tests/testthat/test-glance.R |only spmodel-0.3.0/spmodel/tests/testthat/test-glances.R |only spmodel-0.3.0/spmodel/tests/testthat/test-hatvalues.R |only spmodel-0.3.0/spmodel/tests/testthat/test-hwInv.R |only spmodel-0.3.0/spmodel/tests/testthat/test-influence.R |only spmodel-0.3.0/spmodel/tests/testthat/test-labels.R |only spmodel-0.3.0/spmodel/tests/testthat/test-logLik.R |only spmodel-0.3.0/spmodel/tests/testthat/test-loocv.R |only spmodel-0.3.0/spmodel/tests/testthat/test-model.frame.R |only spmodel-0.3.0/spmodel/tests/testthat/test-model.matrix.R |only spmodel-0.3.0/spmodel/tests/testthat/test-plot.R |only spmodel-0.3.0/spmodel/tests/testthat/test-predict.R |only spmodel-0.3.0/spmodel/tests/testthat/test-print.R |only spmodel-0.3.0/spmodel/tests/testthat/test-randcov_initial.R |only spmodel-0.3.0/spmodel/tests/testthat/test-randcov_names.R |only spmodel-0.3.0/spmodel/tests/testthat/test-randcov_params.R |only spmodel-0.3.0/spmodel/tests/testthat/test-residuals.R |only spmodel-0.3.0/spmodel/tests/testthat/test-smwInv_rand.R |only spmodel-0.3.0/spmodel/tests/testthat/test-sp_objects.R |only spmodel-0.3.0/spmodel/tests/testthat/test-spautorRF.R |only spmodel-0.3.0/spmodel/tests/testthat/test-spcov_initial.R |only spmodel-0.3.0/spmodel/tests/testthat/test-spcov_matrix.R |only spmodel-0.3.0/spmodel/tests/testthat/test-spcov_params.R |only spmodel-0.3.0/spmodel/tests/testthat/test-spcov_vector.R |only spmodel-0.3.0/spmodel/tests/testthat/test-splmRF.R |only spmodel-0.3.0/spmodel/tests/testthat/test-sprnorm.R |only spmodel-0.3.0/spmodel/tests/testthat/test-summary.R |only spmodel-0.3.0/spmodel/tests/testthat/test-tidy.R |only spmodel-0.3.0/spmodel/tests/testthat/test-varcomp.R |only spmodel-0.3.0/spmodel/tests/testthat/test-vcov.R |only spmodel-0.4.0/spmodel/DESCRIPTION | 16 spmodel-0.4.0/spmodel/MD5 | 375 - spmodel-0.4.0/spmodel/NAMESPACE | 136 spmodel-0.4.0/spmodel/NEWS.md | 32 spmodel-0.4.0/spmodel/R/AIC.R | 450 +- spmodel-0.4.0/spmodel/R/AIC_glm.R |only spmodel-0.4.0/spmodel/R/anova.R | 9 spmodel-0.4.0/spmodel/R/anova_glm.R |only spmodel-0.4.0/spmodel/R/augment.R | 520 +- spmodel-0.4.0/spmodel/R/augment_glm.R |only spmodel-0.4.0/spmodel/R/coef.R | 8 spmodel-0.4.0/spmodel/R/coef_glm.R |only spmodel-0.4.0/spmodel/R/confint.R | 6 spmodel-0.4.0/spmodel/R/confint_glm.R |only spmodel-0.4.0/spmodel/R/cooks.distance.R | 6 spmodel-0.4.0/spmodel/R/cooks.distance_glm.R |only spmodel-0.4.0/spmodel/R/cov_betahat_adjust.R | 324 - spmodel-0.4.0/spmodel/R/cov_estimate_laploglik.R |only spmodel-0.4.0/spmodel/R/cov_initial_search.R | 2222 +++++----- spmodel-0.4.0/spmodel/R/cov_initial_search_glm.R |only spmodel-0.4.0/spmodel/R/cov_matrix.R | 120 spmodel-0.4.0/spmodel/R/covmatrix.R | 35 spmodel-0.4.0/spmodel/R/covmatrix_glm.R |only spmodel-0.4.0/spmodel/R/data.R | 265 - spmodel-0.4.0/spmodel/R/deviance.R | 9 spmodel-0.4.0/spmodel/R/deviance_glm.R |only spmodel-0.4.0/spmodel/R/dispersion_checks.R |only spmodel-0.4.0/spmodel/R/dispersion_initial.R |only spmodel-0.4.0/spmodel/R/dispersion_initial_NA.R |only spmodel-0.4.0/spmodel/R/dispersion_optim2orig.R |only spmodel-0.4.0/spmodel/R/dispersion_orig2optim.R |only spmodel-0.4.0/spmodel/R/dispersion_params.R |only spmodel-0.4.0/spmodel/R/esv.R | 12 spmodel-0.4.0/spmodel/R/fitted.R | 2 spmodel-0.4.0/spmodel/R/fitted_glm.R |only spmodel-0.4.0/spmodel/R/formula.R | 4 spmodel-0.4.0/spmodel/R/formula_glm.R |only spmodel-0.4.0/spmodel/R/get_cholprods_glm.R |only spmodel-0.4.0/spmodel/R/get_coefficients_glm.R |only spmodel-0.4.0/spmodel/R/get_cooks_distance.R | 24 spmodel-0.4.0/spmodel/R/get_cooks_distance_glm.R |only spmodel-0.4.0/spmodel/R/get_cov_matrix_list.R | 44 spmodel-0.4.0/spmodel/R/get_data_object.R | 79 spmodel-0.4.0/spmodel/R/get_data_object_glm.R |only spmodel-0.4.0/spmodel/R/get_deviance_glm.R |only spmodel-0.4.0/spmodel/R/get_eigenprods.R | 51 spmodel-0.4.0/spmodel/R/get_eigenprods_glm.R |only spmodel-0.4.0/spmodel/R/get_fitted.R | 8 spmodel-0.4.0/spmodel/R/get_fitted_glm.R |only spmodel-0.4.0/spmodel/R/get_hatvalues_glm.R |only spmodel-0.4.0/spmodel/R/get_initial_range.R | 158 spmodel-0.4.0/spmodel/R/get_loocv_glm.R |only spmodel-0.4.0/spmodel/R/get_minustwolaploglik.R |only spmodel-0.4.0/spmodel/R/get_model_stats.R | 3 spmodel-0.4.0/spmodel/R/get_model_stats_glm.R |only spmodel-0.4.0/spmodel/R/get_optim_par_glm.R |only spmodel-0.4.0/spmodel/R/get_randcov_list.R | 3 spmodel-0.4.0/spmodel/R/get_residuals.R | 60 spmodel-0.4.0/spmodel/R/get_residuals_glm.R |only spmodel-0.4.0/spmodel/R/get_vcov.R | 31 spmodel-0.4.0/spmodel/R/get_vcov_glm.R |only spmodel-0.4.0/spmodel/R/get_wts_varw.R |only spmodel-0.4.0/spmodel/R/glance.R | 6 spmodel-0.4.0/spmodel/R/glance_glm.R |only spmodel-0.4.0/spmodel/R/glances.R | 16 spmodel-0.4.0/spmodel/R/glances_glm.R |only spmodel-0.4.0/spmodel/R/gloglik_products.R | 289 - 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spmodel-0.4.0/spmodel/R/spcov_initial.R | 18 spmodel-0.4.0/spmodel/R/spcov_initial_NA_glm.R |only spmodel-0.4.0/spmodel/R/spcov_matrix.R | 73 spmodel-0.4.0/spmodel/R/spcov_matrixInv_de.R | 216 spmodel-0.4.0/spmodel/R/spcov_optim2orig.R | 310 - spmodel-0.4.0/spmodel/R/spcov_orig2optim.R | 722 +-- spmodel-0.4.0/spmodel/R/spcov_params.R | 5 spmodel-0.4.0/spmodel/R/spcov_vector.R | 292 - spmodel-0.4.0/spmodel/R/spgautor.R |only spmodel-0.4.0/spmodel/R/spgautor_checks.R |only spmodel-0.4.0/spmodel/R/spglm.R |only spmodel-0.4.0/spmodel/R/spglm_checks.R |only spmodel-0.4.0/spmodel/R/splm.R | 785 +-- spmodel-0.4.0/spmodel/R/splmRF.R | 275 - spmodel-0.4.0/spmodel/R/spmodel-package.R | 8 spmodel-0.4.0/spmodel/R/sprbeta.R |only spmodel-0.4.0/spmodel/R/sprbinom.R |only spmodel-0.4.0/spmodel/R/sprgamma.R |only spmodel-0.4.0/spmodel/R/sprinvgauss.R |only spmodel-0.4.0/spmodel/R/sprnbinom.R |only spmodel-0.4.0/spmodel/R/sprnorm.R | 2 spmodel-0.4.0/spmodel/R/sprpois.R |only spmodel-0.4.0/spmodel/R/summary.R | 4 spmodel-0.4.0/spmodel/R/summary_glm.R |only spmodel-0.4.0/spmodel/R/tidy.R | 284 - 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Title: Utility Functions for Exploratory Factor Analysis
Description: A number of utility function for exploratory factor analysis are included in this package. In particular, it computes standard errors for parameter estimates and factor correlations under a variety of conditions.
Author: Guangjian Zhang, Ge Jiang, Minami Hattori, Lauren Trichtinger
Maintainer: Guangjian Zhang <gzhang3@nd.edu>
Diff between EFAutilities versions 2.1.2 dated 2022-08-27 and 2.1.3 dated 2023-05-26
EFAutilities-2.1.2/EFAutilities/R/ModelTest20220708_c.R |only EFAutilities-2.1.2/EFAutilities/R/PolycorGamma20220818_c.R |only EFAutilities-2.1.2/EFAutilities/R/efa20220708_c.R |only EFAutilities-2.1.2/EFAutilities/R/ssem20220711_c.R |only EFAutilities-2.1.3/EFAutilities/DESCRIPTION | 6 EFAutilities-2.1.3/EFAutilities/MD5 | 24 EFAutilities-2.1.3/EFAutilities/NAMESPACE | 1 EFAutilities-2.1.3/EFAutilities/R/ModelTest20230308_c.R |only EFAutilities-2.1.3/EFAutilities/R/PolycorGamma20220819_c.R |only EFAutilities-2.1.3/EFAutilities/R/efa20230525_c.R |only EFAutilities-2.1.3/EFAutilities/R/ssem20230526_c.R |only EFAutilities-2.1.3/EFAutilities/build/vignette.rds |binary EFAutilities-2.1.3/EFAutilities/inst/doc/Examples.R | 267 - EFAutilities-2.1.3/EFAutilities/inst/doc/Examples.Rmd | 16 EFAutilities-2.1.3/EFAutilities/inst/doc/Examples.html | 2532 ++++++------- EFAutilities-2.1.3/EFAutilities/man/efa.Rd | 15 EFAutilities-2.1.3/EFAutilities/vignettes/Examples.Rmd | 16 17 files changed, 1367 insertions(+), 1510 deletions(-)
Title: A Dipping Sauce for Data Analysis and Visualizations
Description: Works as an "add-on" to packages like 'shiny', 'future', as well as
'rlang', and provides utility functions. Just like dipping sauce adding
flavors to potato chips or pita bread, 'dipsaus' for data analysis and
visualizations adds handy functions and enhancements to popular packages.
The goal is to provide simple solutions that are frequently asked for
online, such as how to synchronize 'shiny' inputs without freezing the app,
or how to get memory size on 'Linux' or 'MacOS' system. The enhancements
roughly fall into these four categories: 1. 'shiny' input widgets; 2.
high-performance computing using the 'future' package; 3.
modify R calls and convert among numbers, strings, and other objects. 4.
utility functions to get system information such like CPU chip-set, memory
limit, etc.
Author: Zhengjia Wang [aut, cre],
John Magnotti [ctb] ,
Xiang Zhang [ctb]
Maintainer: Zhengjia Wang <dipterix.wang@gmail.com>
Diff between dipsaus versions 0.2.6 dated 2023-01-21 and 0.2.7 dated 2023-05-26
dipsaus-0.2.6/dipsaus/inst/include/TinyParallel/RMatrix.h |only dipsaus-0.2.6/dipsaus/inst/shiny-addons/dipsaus/junk.js |only dipsaus-0.2.7/dipsaus/DESCRIPTION | 10 dipsaus-0.2.7/dipsaus/MD5 | 39 - dipsaus-0.2.7/dipsaus/NEWS.md | 20 dipsaus-0.2.7/dipsaus/R/credentials.R | 10 dipsaus-0.2.7/dipsaus/R/lock.R | 10 dipsaus-0.2.7/dipsaus/R/parallels-future.R | 5 dipsaus-0.2.7/dipsaus/R/utils-filesystem.R | 23 dipsaus-0.2.7/dipsaus/R/utils-rstudio.R | 27 - dipsaus-0.2.7/dipsaus/build/vignette.rds |binary dipsaus-0.2.7/dipsaus/inst/doc/r_expr_addons.html | 256 +++++------ dipsaus-0.2.7/dipsaus/inst/doc/shiny_customized_widgets.html | 60 +- dipsaus-0.2.7/dipsaus/inst/doc/utility_functions.html | 112 ++-- dipsaus-0.2.7/dipsaus/inst/include/TinyParallel.h | 1 dipsaus-0.2.7/dipsaus/src/Makevars | 1 dipsaus-0.2.7/dipsaus/src/Makevars.win | 1 dipsaus-0.2.7/dipsaus/src/rcpp_arrayShift.cpp | 1 dipsaus-0.2.7/dipsaus/src/rcpp_baselineArray.cpp | 1 dipsaus-0.2.7/dipsaus/src/utils.cpp | 1 dipsaus-0.2.7/dipsaus/tests/testthat.R | 1 dipsaus-0.2.7/dipsaus/tests/testthat/test.zzz.R |only 22 files changed, 322 insertions(+), 257 deletions(-)
Title: Quasi Variances for Factor Effects in Statistical Models
Description: Functions to compute quasi variances and associated measures of approximation error.
Author: David Firth
Maintainer: David Firth <d.firth@warwick.ac.uk>
Diff between qvcalc versions 1.0.2 dated 2020-02-15 and 1.0.3 dated 2023-05-26
DESCRIPTION | 10 +++++----- MD5 | 11 ++++++----- NEWS.md | 7 ++++++- build |only man/plot.qv.Rd | 6 +++--- man/qvcalc.Rd | 6 +++--- man/worstErrors.Rd | 2 +- 7 files changed, 24 insertions(+), 18 deletions(-)
Title: Precipitation R Recipes
Description: An open-access tool/framework to download, validate, visualize,
and analyze multi-source precipitation data across various spatio-temporal
scales. Ultimately providing the hydrology science community with the tools
for consistent and reproducible analysis regarding precipitation.
Author: Mijael Rodrigo Vargas Godoy [aut, cre]
,
Yannis Markonis [aut, ths]
Maintainer: Mijael Rodrigo Vargas Godoy <mirovago@gmail.com>
Diff between pRecipe versions 2.3.0 dated 2023-04-08 and 2.4.0 dated 2023-05-26
pRecipe-2.3.0/pRecipe/R/era5_ce_ts.R |only pRecipe-2.3.0/pRecipe/R/era5_cze_ts.R |only pRecipe-2.3.0/pRecipe/R/era5_global_ts.R |only pRecipe-2.3.0/pRecipe/data/era5_ce_ts.rda |only pRecipe-2.3.0/pRecipe/data/era5_cze_ts.rda |only pRecipe-2.3.0/pRecipe/data/era5_global_ts.rda |only pRecipe-2.3.0/pRecipe/man/era5_ce_ts.Rd |only pRecipe-2.3.0/pRecipe/man/era5_cze_ts.Rd |only pRecipe-2.3.0/pRecipe/man/era5_global_ts.Rd |only pRecipe-2.4.0/pRecipe/DESCRIPTION | 9 pRecipe-2.4.0/pRecipe/MD5 | 70 pRecipe-2.4.0/pRecipe/NAMESPACE | 4 pRecipe-2.4.0/pRecipe/NEWS.md | 8 pRecipe-2.4.0/pRecipe/R/csi.R |only pRecipe-2.4.0/pRecipe/R/download_era20c.R | 2 pRecipe-2.4.0/pRecipe/R/download_fldas.R | 2 pRecipe-2.4.0/pRecipe/R/download_udel.R | 2 pRecipe-2.4.0/pRecipe/R/far.R |only pRecipe-2.4.0/pRecipe/R/globals.R | 3 pRecipe-2.4.0/pRecipe/R/gpm_cz_ts.R |only pRecipe-2.4.0/pRecipe/R/gpm_global_ts.R |only pRecipe-2.4.0/pRecipe/R/gpm_subset_ts.R |only pRecipe-2.4.0/pRecipe/R/nse.R |only pRecipe-2.4.0/pRecipe/R/plot_box.R | 2 pRecipe-2.4.0/pRecipe/R/pod.R |only pRecipe-2.4.0/pRecipe/R/subset_spacetime.R | 12 pRecipe-2.4.0/pRecipe/R/subset_time.R | 14 pRecipe-2.4.0/pRecipe/build/vignette.rds |binary pRecipe-2.4.0/pRecipe/data/gpm_cz_ts.rda |only pRecipe-2.4.0/pRecipe/data/gpm_global_ts.rda |only pRecipe-2.4.0/pRecipe/data/gpm_subset_ts.rda |only pRecipe-2.4.0/pRecipe/inst/CITATION | 11 pRecipe-2.4.0/pRecipe/inst/WORDLIST | 5 pRecipe-2.4.0/pRecipe/inst/doc/pRecipe.R | 168 +- pRecipe-2.4.0/pRecipe/inst/doc/pRecipe.Rmd | 389 ++--- pRecipe-2.4.0/pRecipe/inst/doc/pRecipe.html | 1586 +++++++++++++++------- pRecipe-2.4.0/pRecipe/man/csi.Rd |only pRecipe-2.4.0/pRecipe/man/far.Rd |only pRecipe-2.4.0/pRecipe/man/gpm_cz_ts.Rd |only pRecipe-2.4.0/pRecipe/man/gpm_global_ts.Rd |only pRecipe-2.4.0/pRecipe/man/gpm_subset_ts.Rd |only pRecipe-2.4.0/pRecipe/man/nse.Rd |only pRecipe-2.4.0/pRecipe/man/plot_box.Rd | 2 pRecipe-2.4.0/pRecipe/man/pod.Rd |only pRecipe-2.4.0/pRecipe/vignettes/pRecipe.Rmd | 389 ++--- pRecipe-2.4.0/pRecipe/vignettes/plots/map.png |binary pRecipe-2.4.0/pRecipe/vignettes/plots/map_ceu.png |binary pRecipe-2.4.0/pRecipe/vignettes/plots/map_cze.png |binary pRecipe-2.4.0/pRecipe/vignettes/plots/summary.png |binary 49 files changed, 1748 insertions(+), 930 deletions(-)
Title: 'NoSQL' Database Connector
Description: Simplified document database access and manipulation,
providing a common API across supported 'NoSQL' databases
'Elasticsearch', 'CouchDB', 'MongoDB' as well as
'SQLite/JSON1', 'PostgreSQL', and 'DuckDB'.
Author: Ralf Herold [aut, cre] ,
Scott Chamberlain [aut] ,
Rich FitzJohn [aut],
Jeroen Ooms [aut]
Maintainer: Ralf Herold <ralf.herold@mailbox.org>
Diff between nodbi versions 0.9.4 dated 2023-05-14 and 0.9.5 dated 2023-05-26
DESCRIPTION | 8 +-- MD5 | 14 +++--- NEWS.md | 6 ++ R/create.R | 90 ++++++++++++++++++++++++-------------------- R/query.R | 20 ++++++--- R/update.R | 34 +++++++++------- tests/testthat/core-nodbi.R | 22 +++++----- tests/testthat/helper.R | 16 ++++--- 8 files changed, 122 insertions(+), 88 deletions(-)
Title: E-Value in the Omics Data Association Studies
Description: In the omics data association studies, it is common to conduct the p-value corrections to control the false significance. Beyond the P-value corrections, E-value is recently studied to facilitate multiple testing correction based on V. Vovk and R. Wang (2021) <doi:10.1214/20-AOS2020>. This package provides E-value calculation for DNA methylation data and RNA-seq data. Currently, five data formats are supported: DNA methylation levels using DMR detection tools (BiSeq, DMRfinder, MethylKit, Metilene and other DNA methylation tools) and RNA-seq data. The relevant references are listed below: Katja Hebestreit and Hans-Ulrich Klein (2022) <doi:10.18129/B9.bioc.BiSeq>; Altuna Akalin et.al (2012) <doi:10.18129/B9.bioc.methylKit>.
Author: Yifan Yang [aut, cre, cph],
Xiaoqing Pan [aut],
Haoyuan Liu [aut]
Maintainer: Yifan Yang <yfyang.86@hotmail.com>
Diff between metevalue versions 0.2.2 dated 2023-05-18 and 0.2.4 dated 2023-05-26
metevalue-0.2.2/metevalue/man/varevalue.signle_general.Rd |only metevalue-0.2.4/metevalue/DESCRIPTION | 10 metevalue-0.2.4/metevalue/MD5 | 54 - metevalue-0.2.4/metevalue/NAMESPACE | 2 metevalue-0.2.4/metevalue/R/evalue_data_DMRfinder.R | 23 metevalue-0.2.4/metevalue/R/evalue_data_biseq.R | 39 metevalue-0.2.4/metevalue/R/evalue_data_chk.R | 101 +- metevalue-0.2.4/metevalue/R/evalue_data_methylKit.R | 32 metevalue-0.2.4/metevalue/R/evalue_data_metilene.R | 24 metevalue-0.2.4/metevalue/R/evalue_main.R | 175 ++-- metevalue-0.2.4/metevalue/build/partial.rdb |binary metevalue-0.2.4/metevalue/data/demo_metilene_input.rda |binary metevalue-0.2.4/metevalue/inst/doc/metevalue.R | 171 ---- metevalue-0.2.4/metevalue/inst/doc/metevalue.Rmd | 215 +++-- metevalue-0.2.4/metevalue/inst/doc/metevalue.html | 598 ++++++++++---- metevalue-0.2.4/metevalue/man/demo_biseq_DMR.Rd | 24 metevalue-0.2.4/metevalue/man/demo_metilene_input.Rd | 3 metevalue-0.2.4/metevalue/man/metevalue.DMRfinder.Rd | 23 metevalue-0.2.4/metevalue/man/metevalue.DMRfinder.chk.Rd | 26 metevalue-0.2.4/metevalue/man/metevalue.RNA_general.Rd | 32 metevalue-0.2.4/metevalue/man/metevalue.biseq.Rd | 36 metevalue-0.2.4/metevalue/man/metevalue.biseq.chk.Rd | 24 metevalue-0.2.4/metevalue/man/metevalue.methylKit.Rd | 32 metevalue-0.2.4/metevalue/man/metevalue.methylKit.chk.Rd | 21 metevalue-0.2.4/metevalue/man/metevalue.metilene.Rd | 25 metevalue-0.2.4/metevalue/man/metevalue.metilene.chk.Rd | 24 metevalue-0.2.4/metevalue/man/varevalue.metilene.Rd | 32 metevalue-0.2.4/metevalue/man/varevalue.single_general.Rd |only metevalue-0.2.4/metevalue/vignettes/metevalue.Rmd | 215 +++-- 29 files changed, 1190 insertions(+), 771 deletions(-)
Title: B-Spline Interpolation and Regression
Description: Build and use B-splines for interpolation and regression.
In case of regression, equality constraints as well as monotonicity
and/or positivity of B-spline weights can be imposed. Moreover,
knot positions (not only spline weights) can be part of
optimized parameters too. For this end, 'bspline' is able to calculate
Jacobian of basis vectors as function of knot positions. User is provided with
functions calculating spline values at arbitrary points. These
functions can be differentiated and integrated to obtain B-splines calculating
derivatives/integrals at any point. B-splines of this package can
simultaneously operate on a series of curves sharing the same set of
knots. 'bspline' is written with concern about computing
performance that's why the basis and Jacobian calculation is implemented in C++.
The rest is implemented in R but without notable impact on computing speed.
Author: Serguei Sokol <sokol@insa-toulouse.fr>
Maintainer: Serguei Sokol <sokol@insa-toulouse.fr>
Diff between bspline versions 2.1 dated 2022-09-28 and 2.2 dated 2023-05-26
DESCRIPTION | 8 +-- MD5 | 24 +++++---- NAMESPACE | 2 NEWS.md | 14 +++-- R/RcppExports.R | 17 ++++++ R/bspline.R | 59 +++++++++++++++++++--- cleanup | 2 inst/unitTests/runit.bspline.R | 10 +++ man/bcurve.Rd |only man/diffn.Rd | 2 man/parr.Rd |only src/RcppExports.cpp | 27 ++++++++++ src/bspline.cpp | 106 +++++++++++++++++++++++++++++++++++++++++ tests/RUnit.R | 4 + 14 files changed, 241 insertions(+), 34 deletions(-)
Title: Functions for Diffusing Function Documentations into 'Roxygen'
Comments
Description: Efficient diffusing of content across function documentations. Sections, parameters or dot parameters are extracted from function documentations and turned into valid Rd character strings, which are ready to diffuse into the 'roxygen' comments of another function by inserting inline code.
Author: Xiurui Zhu [aut, cre]
Maintainer: Xiurui Zhu <zxr6@163.com>
Diff between roclang versions 0.2.1 dated 2023-01-21 and 0.2.2 dated 2023-05-26
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS.md | 9 +++++++++ README.md | 35 ++++++++++++++++++++--------------- 4 files changed, 35 insertions(+), 21 deletions(-)
Title: Tools for 2D and 3D Plots of Single and Multi-Objective
Linear/Integer Programming Models
Description: Make 2D and 3D plots of linear programming (LP),
integer linear programming (ILP), or mixed integer linear programming (MILP) models
with up to three objectives. Plots of both the solution and criterion space are possible.
For instance the non-dominated (Pareto) set for bi-objective LP/ILP/MILP programming models
(see vignettes for an overview). The package also contains an function for checking if a point
is inside the convex hull.
Author: Lars Relund Nielsen [aut, cre]
Maintainer: Lars Relund Nielsen <lars@relund.dk>
Diff between gMOIP versions 1.4.9 dated 2023-02-15 and 1.5.0 dated 2023-05-26
DESCRIPTION | 6 MD5 | 21 NEWS.md | 5 R/plot.R | 61 build/vignette.rds |binary inst/doc/bi-objective_2x.html | 32 inst/doc/bi-objective_3x_ex1.html | 7728 -------------------------------------- inst/doc/intro.html | 16 inst/doc/polytope_2d.html | 4 inst/doc/tri-objective.html | 7704 ------------------------------------- man/plotLines2D.Rd |only man/plotPolytope.Rd | 2 12 files changed, 141 insertions(+), 15438 deletions(-)
Title: Wearable Accelerometer Data File Readers
Description: Reads data collected from wearable acceleratometers as used in sleep and physical activity research. Currently supports file formats: binary data from 'GENEActiv' <https://activinsights.com/>, binary data from GENEA devices (not for sale), and .cwa-format and .wav-format data from 'Axivity' <https://axivity.com>. Primarily designed to complement R package GGIR <https://CRAN.R-project.org/package=GGIR>.
Author: Vincent T van Hees [aut, cre],
Patrick Bos [aut] ,
Jing Hua Zhao [ctb],
Evgeny Mirkes [ctb],
Dan Jackson [ctb],
Jairo H Migueles [ctb],
Medical Research Council UK [cph, fnd],
Accelting [cph, fnd]
Maintainer: Vincent T van Hees <v.vanhees@accelting.com>
Diff between GGIRread versions 0.2.7 dated 2023-05-17 and 0.2.8 dated 2023-05-26
DESCRIPTION | 8 +++--- MD5 | 10 +++---- R/readAxivity.R | 63 ++++++++++++++++++++++++++++++++++++++---------- inst/NEWS.Rd | 7 +++++ man/GGIRread-package.Rd | 4 +-- src/resample.cpp | 6 ++++ 6 files changed, 75 insertions(+), 23 deletions(-)
Title: Create Cartograms with R
Description: Construct continuous and non-contiguous area cartograms.
Author: Sebastian Jeworutzki [aut, cre]
,
Timothee Giraud [ctb],
Nicolas Lambert [ctb],
Roger Bivand [cph],
Edzer Pebesma [cph],
Jakub Nowosad [ctb]
Maintainer: Sebastian Jeworutzki <sebastian.jeworutzki@ruhr-uni-bochum.de>
Diff between cartogram versions 0.2.2 dated 2020-08-26 and 0.3.0 dated 2023-05-26
DESCRIPTION | 11 +-- MD5 | 26 ++++---- NEWS | 1 R/cartogram_cont.R | 60 +++++++------------ R/cartogram_dorling.R | 48 +++++---------- R/cartogram_ncont.R | 38 ++++-------- README.md | 119 +++++++++++---------------------------- man/cartogram.Rd | 1 man/cartogram_cont.Rd | 46 +++++---------- man/cartogram_dorling.Rd | 35 +++-------- man/cartogram_ncont.Rd | 33 +++------- man/figures/README-cont-1.png |binary man/figures/README-dorling-1.png |binary man/figures/README-ncont-1.png |binary 14 files changed, 151 insertions(+), 267 deletions(-)
Title: Processing of Model Parameters
Description: Utilities for processing the parameters of various
statistical models. Beyond computing p values, CIs, and other indices
for a wide variety of models (see list of supported models using the
function 'insight::supported_models()'), this package implements
features like bootstrapping or simulating of parameters and models,
feature reduction (feature extraction and variable selection) as well
as functions to describe data and variable characteristics (e.g.
skewness, kurtosis, smoothness or distribution).
Author: Daniel Luedecke [aut, cre] ,
Dominique Makowski [aut] ,
Mattan S. Ben-Shachar [aut] ,
Indrajeet Patil [aut] ,
Soeren Hoejsgaard [aut],
Brenton M. Wiernik [aut] ,
Zen J. Lau [ctb],
Vincent Arel-Bundock [ctb] ,
Jeffrey Girard [ctb] ,
Christina Maimone [re [...truncated...]
Maintainer: Daniel Luedecke <d.luedecke@uke.de>
Diff between parameters versions 0.21.0 dated 2023-04-19 and 0.21.1 dated 2023-05-26
DESCRIPTION | 22 ++--- MD5 | 27 +++--- NAMESPACE | 8 ++ NEWS.md | 16 ++++ R/1_model_parameters.R | 16 +++- R/2_ci.R | 4 - R/bootstrap_model.R | 53 +++++++++++++ R/format.R | 8 ++ R/methods_nestedLogit.R |only R/parameters_type.R | 25 +++++- R/utils_cleaners.R | 9 +- inst/WORDLIST | 1 tests/testthat/test-mipo.R | 8 +- tests/testthat/test-nestedLogit.R |only tests/testthat/test-ordered.R |only tests/testthat/test-robust.R | 147 ++++++++++++++------------------------ 16 files changed, 219 insertions(+), 125 deletions(-)
Title: Hierarchical and Geographically Weighted Regression
Description: This model divides coefficients into three types,
i.e., local fixed effects, global fixed effects, and random effects (Hu et al., 2022)<doi:10.1177/23998083211063885>.
If data have spatial hierarchical structures (especially are overlapping on some locations),
it is worth trying this model to reach better fitness.
Author: Yigong Hu, Richard Harris, Richard Timmerman
Maintainer: Yigong Hu <yigong.hu@bristol.ac.uk>
Diff between hgwrr versions 0.2-3 dated 2022-06-15 and 0.3-0 dated 2023-05-26
DESCRIPTION | 11 + MD5 | 20 +-- R/hgwr.R | 86 +++++++++----- build/partial.rdb |binary data/wuhan.hp.rda |binary man/hgwr.Rd | 10 + src/Makevars.in | 3 src/Makevars.win | 3 src/RcppExports.cpp | 60 +++++++--- src/hlmgwr.cpp | 306 +++++++++++++++++++++++++++++++++++++++------------- src/hlmgwr.h | 16 +- 11 files changed, 363 insertions(+), 152 deletions(-)
Title: Retrieve and Analyze Clinical Trials in Public Registers
Description: A system for querying, retrieving and analyzing
protocol- and results-related information on clinical trials from
four public registers, the 'European Union Clinical Trials Register'
('EUCTR', <https://www.clinicaltrialsregister.eu/>),
'ClinicalTrials.gov' ('CTGOV', <https://clinicaltrials.gov/>),
the 'ISRCTN' (<http://www.isrctn.com/>) and the
'European Union Clinical Trials Information System'
('CTIS', <https://euclinicaltrials.eu/>).
Trial information is downloaded, converted and stored in a database
('PostgreSQL', 'SQLite', 'DuckDB' or 'MongoDB'; via package 'nodbi').
Documents in registers associated with trials can also be downloaded.
Functions can identify deduplicated records,
easily find and extract variables (fields) of interest even
from complex nesting as used by the registers, and
to update queries.
The package can be used for meta-analysis and trend-analysis of
the design and conduct as well as of the results of clinical trials.
Author: Ralf Herold [aut, cre]
Maintainer: Ralf Herold <ralf.herold@mailbox.org>
Diff between ctrdata versions 1.13.1 dated 2023-05-07 and 1.13.2 dated 2023-05-26
DESCRIPTION | 10 ++--- MD5 | 32 ++++++++-------- NAMESPACE | 5 -- NEWS.md | 4 ++ R/main.R | 6 +-- R/utils.R | 54 +++++++++++---------------- inst/doc/ctrdata_install.pdf |binary inst/doc/ctrdata_retrieve.pdf |binary inst/doc/ctrdata_summarise.pdf |binary inst/tinytest/setup_ctrdata.R | 4 +- inst/tinytest/test_ctrdata_other_functions.R | 2 - man/ctrGetQueryUrl.Rd | 2 - man/dbGetFieldsIntoDf.Rd | 2 - man/dbQueryHistory.Rd | 2 - man/dfListExtractKey.Rd | 2 - man/dfName2Value.Rd | 2 - man/dfTrials2Long.Rd | 2 - 17 files changed, 60 insertions(+), 69 deletions(-)
Title: Download Map Data from GISCO API - Eurostat
Description: Tools to download data from the GISCO (Geographic Information
System of the Commission) Eurostat database
<https://ec.europa.eu/eurostat/web/gisco>. Global and European map
data available. This package is in no way officially related to or
endorsed by Eurostat.
Author: Diego Hernangomez [aut, cre, cph]
,
EuroGeographics [cph] ,
Vincent Arel-Bundock [cph]
Maintainer: Diego Hernangomez <diego.hernangomezherrero@gmail.com>
Diff between giscoR versions 0.3.3 dated 2023-02-16 and 0.3.4 dated 2023-05-26
DESCRIPTION | 7 MD5 | 130 +- NAMESPACE | 46 - NEWS.md | 4 R/data.R | 448 +++++----- R/giscoR-package.R | 12 R/gisco_bulk_download.R | 312 +++---- R/gisco_cache.R | 434 ++++----- R/gisco_check_access.R | 100 +- R/gisco_get_airports.R | 294 +++--- R/gisco_get_coastallines.R | 190 ++-- R/gisco_get_countries.R | 426 ++++----- R/gisco_get_grid.R | 426 ++++----- R/gisco_get_healthcare.R | 180 ++-- R/gisco_get_lau.R | 624 +++++++------- R/gisco_get_nuts.R | 342 +++---- R/gisco_get_units.R | 740 ++++++++-------- R/gisco_get_urban_audit.R | 206 ++-- R/utils_downloads.R | 960 ++++++++++----------- R/utils_names.R | 216 ++-- README.md | 742 ++++++++-------- build/vignette.rds |binary data/gisco_coastallines.rda |binary data/gisco_countries.rda |binary data/gisco_countrycode.rda |binary data/gisco_db.rda |binary data/gisco_nuts.rda |binary data/tgs00026.rda |binary inst/CITATION | 44 inst/COPYRIGHTS | 246 ++--- inst/WORDLIST | 157 +-- inst/doc/giscoR.Rmd | 593 ++++++------- inst/doc/giscoR.html | 1243 ++++++++++++++-------------- man/giscoR-package.Rd | 64 - man/gisco_attributions.Rd | 144 +-- man/gisco_bulk_download.Rd | 216 ++-- man/gisco_check_access.Rd | 40 man/gisco_clear_cache.Rd | 118 +- man/gisco_coastallines.Rd | 108 +- man/gisco_countries.Rd | 98 +- man/gisco_countrycode.Rd | 104 +- man/gisco_db.Rd | 48 - man/gisco_get.Rd | 294 +++--- man/gisco_get_airports.Rd | 260 ++--- man/gisco_get_coastallines.Rd | 204 ++-- man/gisco_get_grid.Rd | 328 +++---- man/gisco_get_healthcare.Rd | 200 ++-- man/gisco_get_lau.Rd | 272 +++--- man/gisco_get_nuts.Rd | 306 +++--- man/gisco_get_postalcodes.Rd | 210 ++-- man/gisco_get_units.Rd | 332 +++---- man/gisco_get_urban_audit.Rd | 222 ++--- man/gisco_nuts.Rd | 104 +- man/gisco_set_cache_dir.Rd | 128 +- man/tgs00026.Rd | 78 - tests/testthat.R | 16 tests/testthat/_snaps/gisco_attributions.md | 64 - tests/testthat/test-gisco_attributions.R | 52 - tests/testthat/test-gisco_cache.R | 80 - tests/testthat/test-gisco_get_countries.R | 160 +-- tests/testthat/test-gisco_get_grid.R | 15 tests/testthat/test-gisco_get_healthcare.R | 18 vignettes/africa-1.png |binary vignettes/country-1.png |binary vignettes/giscoR-1.png |binary vignettes/giscoR.Rmd | 593 ++++++------- 66 files changed, 7022 insertions(+), 6976 deletions(-)
Title: Standardize Plant Names According to World Flora Online
Taxonomic Backbone
Description: World Flora Online is an online flora of all known plants, available from <http://www.worldfloraonline.org/>. Methods are provided of matching a list of plant names (scientific names, taxonomic names, botanical names) against a static copy of the World Flora Online Taxonomic Backbone data that can be downloaded from the World Flora Online website. The World Flora Online Taxonomic Backbone is an updated version of The Plant List (<http://www.theplantlist.org/>), a working list of plant names that has become static since 2013.
Author: Roeland Kindt [cre, aut]
Maintainer: Roeland Kindt <RoelandCEKindt@gmail.com>
Diff between WorldFlora versions 1.13 dated 2023-03-27 and 1.13-2 dated 2023-05-26
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/WFO.download.R | 3 ++- inst/ChangeLog | 8 ++++++++ man/WFO.remember.Rd | 6 ++---- 5 files changed, 20 insertions(+), 13 deletions(-)
Title: Read, Write and Edit 'xlsx' Files
Description: Simplifies the creation of 'xlsx' files by
providing a high level interface to writing, styling and editing
worksheets.
Author: Jordan Mark Barbone [aut] ,
Jan Marvin Garbuszus [aut, cre],
openxlsx authors [cph] ,
Arseny Kapoulkine [ctb, cph]
Maintainer: Jan Marvin Garbuszus <jan.garbuszus@ruhr-uni-bochum.de>
Diff between openxlsx2 versions 0.6.1 dated 2023-04-21 and 0.7 dated 2023-05-26
openxlsx2-0.6.1/openxlsx2/man/convert_datetime.Rd |only openxlsx2-0.6.1/openxlsx2/man/numfmt_is_date.Rd |only openxlsx2-0.6.1/openxlsx2/man/numfmt_is_posix.Rd |only openxlsx2-0.6.1/openxlsx2/man/style_is_date.Rd |only openxlsx2-0.6.1/openxlsx2/man/style_is_posix.Rd |only openxlsx2-0.6.1/openxlsx2/tests/testthat/test-table_overlaps.R |only openxlsx2-0.6.1/openxlsx2/tests/testthat/test-validate_table_name.R |only openxlsx2-0.7/openxlsx2/DESCRIPTION | 6 openxlsx2-0.7/openxlsx2/MD5 | 147 +-- openxlsx2-0.7/openxlsx2/NAMESPACE | 6 openxlsx2-0.7/openxlsx2/NEWS.md | 30 openxlsx2-0.7/openxlsx2/R/RcppExports.R | 4 openxlsx2-0.7/openxlsx2/R/baseXML.R | 79 + openxlsx2-0.7/openxlsx2/R/class-chart-sheet.R | 56 - openxlsx2-0.7/openxlsx2/R/class-color.R | 12 openxlsx2-0.7/openxlsx2/R/class-style_mgr.R | 76 + openxlsx2-0.7/openxlsx2/R/class-workbook-wrappers.R | 178 +++ openxlsx2-0.7/openxlsx2/R/class-workbook.R | 467 +++++++--- openxlsx2-0.7/openxlsx2/R/class-worksheet.R | 120 ++ openxlsx2-0.7/openxlsx2/R/dates.R | 69 + openxlsx2-0.7/openxlsx2/R/get-named-regions.R | 13 openxlsx2-0.7/openxlsx2/R/helperFunctions.R | 67 + openxlsx2-0.7/openxlsx2/R/openxlsx2.R | 4 openxlsx2-0.7/openxlsx2/R/pugixml.R | 2 openxlsx2-0.7/openxlsx2/R/utils.R | 126 ++ openxlsx2-0.7/openxlsx2/R/wb_functions.R | 97 +- openxlsx2-0.7/openxlsx2/R/wb_load.R | 19 openxlsx2-0.7/openxlsx2/R/wb_styles.R | 208 ++++ openxlsx2-0.7/openxlsx2/R/write.R | 139 ++ openxlsx2-0.7/openxlsx2/R/write_xlsx.R | 2 openxlsx2-0.7/openxlsx2/build/vignette.rds |binary openxlsx2-0.7/openxlsx2/inst/WORDLIST | 39 openxlsx2-0.7/openxlsx2/inst/doc/conditional-formatting.html | 26 openxlsx2-0.7/openxlsx2/inst/doc/openxlsx2_charts_manual.html | 14 openxlsx2-0.7/openxlsx2/inst/doc/openxlsx2_formulas_manual.R |only openxlsx2-0.7/openxlsx2/inst/doc/openxlsx2_formulas_manual.Rmd |only openxlsx2-0.7/openxlsx2/inst/doc/openxlsx2_formulas_manual.html |only openxlsx2-0.7/openxlsx2/inst/doc/openxlsx2_style_manual.R | 208 +++- openxlsx2-0.7/openxlsx2/inst/doc/openxlsx2_style_manual.Rmd | 226 +++- openxlsx2-0.7/openxlsx2/inst/doc/openxlsx2_style_manual.html | 430 +++++---- openxlsx2-0.7/openxlsx2/man/convert_date.Rd | 16 openxlsx2-0.7/openxlsx2/man/create_dxfs_style.Rd | 6 openxlsx2-0.7/openxlsx2/man/create_tablestyle.Rd |only openxlsx2-0.7/openxlsx2/man/fmt_txt.Rd |only openxlsx2-0.7/openxlsx2/man/named_region.Rd | 4 openxlsx2-0.7/openxlsx2/man/style_mgr.Rd | 37 openxlsx2-0.7/openxlsx2/man/wbChartSheet.Rd | 16 openxlsx2-0.7/openxlsx2/man/wbWorkbook.Rd | 168 +++ openxlsx2-0.7/openxlsx2/man/wbWorksheet.Rd | 50 + openxlsx2-0.7/openxlsx2/man/wb_add_formula.Rd | 3 openxlsx2-0.7/openxlsx2/man/wb_add_ignore_error.Rd |only openxlsx2-0.7/openxlsx2/man/wb_protect.Rd | 2 openxlsx2-0.7/openxlsx2/man/wb_remove_tables.Rd | 4 openxlsx2-0.7/openxlsx2/man/wb_set_sheetview.Rd |only openxlsx2-0.7/openxlsx2/man/wb_to_df.Rd | 11 openxlsx2-0.7/openxlsx2/man/wb_update_table.Rd |only openxlsx2-0.7/openxlsx2/man/write_data.Rd | 1 openxlsx2-0.7/openxlsx2/man/write_formula.Rd | 3 openxlsx2-0.7/openxlsx2/man/write_xlsx.Rd | 2 openxlsx2-0.7/openxlsx2/src/RcppExports.cpp | 9 openxlsx2-0.7/openxlsx2/src/helper_functions.cpp | 34 openxlsx2-0.7/openxlsx2/src/openxlsx2_types.h | 5 openxlsx2-0.7/openxlsx2/src/strings_xml.cpp | 20 openxlsx2-0.7/openxlsx2/tests/testthat/test-Workbook_properties.R | 27 openxlsx2-0.7/openxlsx2/tests/testthat/test-class-comment.R | 5 openxlsx2-0.7/openxlsx2/tests/testthat/test-class-workbook-wrappers.R | 34 openxlsx2-0.7/openxlsx2/tests/testthat/test-class-worksheet.R | 22 openxlsx2-0.7/openxlsx2/tests/testthat/test-conditional_formatting.R | 2 openxlsx2-0.7/openxlsx2/tests/testthat/test-date_time_conversion.R | 62 + openxlsx2-0.7/openxlsx2/tests/testthat/test-deleting_tables.R | 38 openxlsx2-0.7/openxlsx2/tests/testthat/test-formulas.R | 40 openxlsx2-0.7/openxlsx2/tests/testthat/test-loading_workbook_tables.R | 12 openxlsx2-0.7/openxlsx2/tests/testthat/test-named_regions.R | 2 openxlsx2-0.7/openxlsx2/tests/testthat/test-read_sources.R | 20 openxlsx2-0.7/openxlsx2/tests/testthat/test-read_xlsx_random_seed.R | 21 openxlsx2-0.7/openxlsx2/tests/testthat/test-remove_worksheets.R | 74 + openxlsx2-0.7/openxlsx2/tests/testthat/test-styles_xml.R | 2 openxlsx2-0.7/openxlsx2/tests/testthat/test-tables.R |only openxlsx2-0.7/openxlsx2/tests/testthat/test-utils.R | 45 openxlsx2-0.7/openxlsx2/tests/testthat/test-wb_styles.R | 27 openxlsx2-0.7/openxlsx2/tests/testthat/test-writing_posixct.R | 3 openxlsx2-0.7/openxlsx2/vignettes/openxlsx2_formulas_manual.Rmd |only openxlsx2-0.7/openxlsx2/vignettes/openxlsx2_style_manual.Rmd | 226 +++- 83 files changed, 3200 insertions(+), 723 deletions(-)
Title: Simplify 'ggplot2' Visualisation
Description: Simplify 'ggplot2' visualisation with 'ggblanket' wrapper functions.
Author: David Hodge [aut, cre, cph] ,
Nik Mitchell [ctb]
Maintainer: David Hodge <davidhodge931@gmail.com>
Diff between ggblanket versions 1.8.0 dated 2023-04-24 and 2.0.0 dated 2023-05-26
ggblanket-1.8.0/ggblanket/R/add_tooltip.R |only ggblanket-1.8.0/ggblanket/man/add_tooltip.Rd |only ggblanket-1.8.0/ggblanket/man/na_if_double.Rd |only ggblanket-1.8.0/ggblanket/man/pal_default.Rd |only ggblanket-1.8.0/ggblanket/man/pal_na_default.Rd |only ggblanket-2.0.0/ggblanket/DESCRIPTION | 14 ggblanket-2.0.0/ggblanket/LICENSE | 2 ggblanket-2.0.0/ggblanket/MD5 | 173 - ggblanket-2.0.0/ggblanket/NAMESPACE | 6 ggblanket-2.0.0/ggblanket/NEWS.md | 24 ggblanket-2.0.0/ggblanket/R/gg_area.R | 1120 +++++----- ggblanket-2.0.0/ggblanket/R/gg_bar.R | 1118 ++++----- ggblanket-2.0.0/ggblanket/R/gg_bin2d.R | 1118 ++++----- ggblanket-2.0.0/ggblanket/R/gg_blank.R | 1119 ++++----- ggblanket-2.0.0/ggblanket/R/gg_boxplot.R | 1117 ++++----- ggblanket-2.0.0/ggblanket/R/gg_col.R | 1120 +++++----- ggblanket-2.0.0/ggblanket/R/gg_crossbar.R | 1118 ++++----- ggblanket-2.0.0/ggblanket/R/gg_density.R | 1118 ++++----- ggblanket-2.0.0/ggblanket/R/gg_errorbar.R | 1118 ++++----- ggblanket-2.0.0/ggblanket/R/gg_freqpoly.R | 1112 +++++---- ggblanket-2.0.0/ggblanket/R/gg_function.R | 1118 ++++----- ggblanket-2.0.0/ggblanket/R/gg_hex.R | 1118 ++++----- ggblanket-2.0.0/ggblanket/R/gg_histogram.R | 1118 ++++----- ggblanket-2.0.0/ggblanket/R/gg_jitter.R | 1119 ++++----- ggblanket-2.0.0/ggblanket/R/gg_label.R | 1120 +++++----- ggblanket-2.0.0/ggblanket/R/gg_line.R | 1119 ++++----- ggblanket-2.0.0/ggblanket/R/gg_linerange.R | 1119 ++++----- ggblanket-2.0.0/ggblanket/R/gg_path.R | 1118 ++++----- ggblanket-2.0.0/ggblanket/R/gg_point.R | 1119 ++++----- ggblanket-2.0.0/ggblanket/R/gg_pointrange.R | 1119 ++++----- ggblanket-2.0.0/ggblanket/R/gg_polygon.R | 1119 ++++----- ggblanket-2.0.0/ggblanket/R/gg_qq.R | 1118 ++++----- ggblanket-2.0.0/ggblanket/R/gg_raster.R | 1118 ++++----- ggblanket-2.0.0/ggblanket/R/gg_rect.R | 1118 ++++----- ggblanket-2.0.0/ggblanket/R/gg_ribbon.R | 1118 ++++----- ggblanket-2.0.0/ggblanket/R/gg_segment.R | 1119 ++++----- ggblanket-2.0.0/ggblanket/R/gg_sf.R | 970 +++++++- ggblanket-2.0.0/ggblanket/R/gg_smooth.R | 1119 ++++----- ggblanket-2.0.0/ggblanket/R/gg_step.R | 1119 ++++----- ggblanket-2.0.0/ggblanket/R/gg_text.R | 1120 +++++----- ggblanket-2.0.0/ggblanket/R/gg_tile.R | 1118 ++++----- ggblanket-2.0.0/ggblanket/R/gg_violin.R | 1120 +++++----- ggblanket-2.0.0/ggblanket/R/pal.R | 44 ggblanket-2.0.0/ggblanket/R/utils.R | 2 ggblanket-2.0.0/ggblanket/README.md | 35 ggblanket-2.0.0/ggblanket/build/vignette.rds |binary ggblanket-2.0.0/ggblanket/inst/doc/ggblanket.R | 500 ++-- ggblanket-2.0.0/ggblanket/inst/doc/ggblanket.Rmd | 715 ++---- ggblanket-2.0.0/ggblanket/inst/doc/ggblanket.html | 988 +++----- ggblanket-2.0.0/ggblanket/man/figures/README-setup-1.png |only ggblanket-2.0.0/ggblanket/man/figures/README-setup-2.png |only ggblanket-2.0.0/ggblanket/man/figures/README-unnamed-chunk-2-1.png |binary ggblanket-2.0.0/ggblanket/man/figures/README-unnamed-chunk-3-1.png |binary ggblanket-2.0.0/ggblanket/man/figures/README-unnamed-chunk-4-1.png |binary ggblanket-2.0.0/ggblanket/man/gg_area.Rd | 18 ggblanket-2.0.0/ggblanket/man/gg_bar.Rd | 16 ggblanket-2.0.0/ggblanket/man/gg_bin2d.Rd | 16 ggblanket-2.0.0/ggblanket/man/gg_blank.Rd | 16 ggblanket-2.0.0/ggblanket/man/gg_boxplot.Rd | 16 ggblanket-2.0.0/ggblanket/man/gg_col.Rd | 18 ggblanket-2.0.0/ggblanket/man/gg_crossbar.Rd | 16 ggblanket-2.0.0/ggblanket/man/gg_density.Rd | 16 ggblanket-2.0.0/ggblanket/man/gg_errorbar.Rd | 16 ggblanket-2.0.0/ggblanket/man/gg_freqpoly.Rd | 16 ggblanket-2.0.0/ggblanket/man/gg_function.Rd | 16 ggblanket-2.0.0/ggblanket/man/gg_hex.Rd | 16 ggblanket-2.0.0/ggblanket/man/gg_histogram.Rd | 16 ggblanket-2.0.0/ggblanket/man/gg_jitter.Rd | 16 ggblanket-2.0.0/ggblanket/man/gg_label.Rd | 18 ggblanket-2.0.0/ggblanket/man/gg_line.Rd | 16 ggblanket-2.0.0/ggblanket/man/gg_linerange.Rd | 16 ggblanket-2.0.0/ggblanket/man/gg_path.Rd | 16 ggblanket-2.0.0/ggblanket/man/gg_point.Rd | 16 ggblanket-2.0.0/ggblanket/man/gg_pointrange.Rd | 16 ggblanket-2.0.0/ggblanket/man/gg_polygon.Rd | 16 ggblanket-2.0.0/ggblanket/man/gg_qq.Rd | 16 ggblanket-2.0.0/ggblanket/man/gg_raster.Rd | 16 ggblanket-2.0.0/ggblanket/man/gg_rect.Rd | 16 ggblanket-2.0.0/ggblanket/man/gg_ribbon.Rd | 16 ggblanket-2.0.0/ggblanket/man/gg_segment.Rd | 16 ggblanket-2.0.0/ggblanket/man/gg_sf.Rd | 11 ggblanket-2.0.0/ggblanket/man/gg_smooth.Rd | 16 ggblanket-2.0.0/ggblanket/man/gg_step.Rd | 16 ggblanket-2.0.0/ggblanket/man/gg_text.Rd | 18 ggblanket-2.0.0/ggblanket/man/gg_tile.Rd | 16 ggblanket-2.0.0/ggblanket/man/gg_violin.Rd | 18 ggblanket-2.0.0/ggblanket/man/ggblanket-package.Rd | 2 ggblanket-2.0.0/ggblanket/man/na_if_inf.Rd |only ggblanket-2.0.0/ggblanket/man/pal_blue.Rd |only ggblanket-2.0.0/ggblanket/man/pal_grey.Rd |only ggblanket-2.0.0/ggblanket/man/pal_hue.Rd |only ggblanket-2.0.0/ggblanket/vignettes/ggblanket.Rmd | 715 ++---- ggblanket-2.0.0/ggblanket/vignettes/screenshot_autotab_col.png |only ggblanket-2.0.0/ggblanket/vignettes/screenshot_autotab_y.png |only 94 files changed, 19820 insertions(+), 19558 deletions(-)
Title: Linking R with the Open-Source 'SAGA-GIS' Software
Description: Provides an R scripting interface to the open-source 'SAGA-GIS'
(System for Automated Geoscientific Analyses Geographical Information
System) software. 'Rsagacmd' dynamically generates R functions for every
'SAGA-GIS' geoprocessing tool based on the user's currently installed
'SAGA-GIS' version. These functions are contained within an S3 object
and are accessed as a named list of libraries and tools. This structure
facilitates an easier scripting experience by organizing the large number
of 'SAGA-GIS' geoprocessing tools (>700) by their respective library.
Interactive scripting can fully take advantage of code autocompletion tools
(e.g. in 'Rstudio'), allowing for each tools syntax to be quickly
recognized. Furthermore, the most common types of spatial data (via the
'terra', 'sp', and 'sf' packages) along with non-spatial data are
automatically passed from R to the 'SAGA-GIS' command line tool for
geoprocessing operations, and the results are loaded as the appropriate R
object. Outp [...truncated...]
Author: Steven Pawley [aut, cre]
Maintainer: Steven Pawley <dr.stevenpawley@gmail.com>
Diff between Rsagacmd versions 0.2.0 dated 2022-04-04 and 0.4.0 dated 2023-05-25
Rsagacmd-0.2.0/Rsagacmd/man/figures |only Rsagacmd-0.4.0/Rsagacmd/DESCRIPTION | 25 Rsagacmd-0.4.0/Rsagacmd/MD5 | 86 Rsagacmd-0.4.0/Rsagacmd/NAMESPACE | 4 Rsagacmd-0.4.0/Rsagacmd/NEWS.md | 164 - Rsagacmd-0.4.0/Rsagacmd/R/Rsagacmd.R | 205 - Rsagacmd-0.4.0/Rsagacmd/R/data-formats.R | 88 Rsagacmd-0.4.0/Rsagacmd/R/file-extensions.R | 202 - Rsagacmd-0.4.0/Rsagacmd/R/io-read.R | 312 +- Rsagacmd-0.4.0/Rsagacmd/R/io-save.R | 480 +--- Rsagacmd-0.4.0/Rsagacmd/R/man.R | 76 Rsagacmd-0.4.0/Rsagacmd/R/parameters.R | 794 +++--- Rsagacmd-0.4.0/Rsagacmd/R/read-srtm.R | 44 Rsagacmd-0.4.0/Rsagacmd/R/run-cmd.R | 119 - Rsagacmd-0.4.0/Rsagacmd/R/saga-gis.R | 1182 ++++------ Rsagacmd-0.4.0/Rsagacmd/R/saga-version.R | 40 Rsagacmd-0.4.0/Rsagacmd/R/search-saga.R | 183 - Rsagacmd-0.4.0/Rsagacmd/R/search-tools.R | 108 Rsagacmd-0.4.0/Rsagacmd/R/tempfiles.R | 156 - Rsagacmd-0.4.0/Rsagacmd/R/tidy.R | 410 +-- Rsagacmd-0.4.0/Rsagacmd/R/tool-execute.R | 300 +- Rsagacmd-0.4.0/Rsagacmd/R/tool-function.R | 68 Rsagacmd-0.4.0/Rsagacmd/R/tool-object.R | 148 - Rsagacmd-0.4.0/Rsagacmd/R/tool-overrides.R | 132 - Rsagacmd-0.4.0/Rsagacmd/R/utils.R | 194 - Rsagacmd-0.4.0/Rsagacmd/README.md | 573 ++-- Rsagacmd-0.4.0/Rsagacmd/man/Rsagacmd.Rd | 225 - Rsagacmd-0.4.0/Rsagacmd/man/saga_env.Rd | 6 Rsagacmd-0.4.0/Rsagacmd/man/saga_gis.Rd | 16 Rsagacmd-0.4.0/Rsagacmd/man/search_saga.Rd | 25 Rsagacmd-0.4.0/Rsagacmd/man/tile_geoprocessor.Rd | 4 Rsagacmd-0.4.0/Rsagacmd/tests/testthat.R | 8 Rsagacmd-0.4.0/Rsagacmd/tests/testthat/test-backends-raster.R | 300 -- Rsagacmd-0.4.0/Rsagacmd/tests/testthat/test-backends-vector.R | 58 Rsagacmd-0.4.0/Rsagacmd/tests/testthat/test-data-formats.R | 160 - Rsagacmd-0.4.0/Rsagacmd/tests/testthat/test-outputs-grid-lists.R | 83 Rsagacmd-0.4.0/Rsagacmd/tests/testthat/test-saga-environment.R | 204 - Rsagacmd-0.4.0/Rsagacmd/tests/testthat/test-search-tools.R | 18 Rsagacmd-0.4.0/Rsagacmd/tests/testthat/test-tempfiles.R | 80 Rsagacmd-0.4.0/Rsagacmd/tests/testthat/test-tidy.R | 64 Rsagacmd-0.4.0/Rsagacmd/tests/testthat/test-tool-overrides.R | 142 - Rsagacmd-0.4.0/Rsagacmd/tests/testthat/test-tools.R | 124 - Rsagacmd-0.4.0/Rsagacmd/tests/testthat/test-utils.R | 40 Rsagacmd-0.4.0/Rsagacmd/tests/testthat/test-versions.R | 331 +- 44 files changed, 3885 insertions(+), 4096 deletions(-)
Title: Extension for 'DALEX' Package
Description: Provides wrapper of various machine learning models.
In applied machine learning, there
is a strong belief that we need to strike a balance
between interpretability and accuracy.
However, in field of the interpretable machine learning,
there are more and more new ideas for explaining black-box models,
that are implemented in 'R'.
'DALEXtra' creates 'DALEX' Biecek (2018) <arXiv:1806.08915> explainer for many type of models
including those created using 'python' 'scikit-learn' and 'keras' libraries, and 'java' 'h2o' library.
Important part of the package is Champion-Challenger analysis and innovative approach
to model performance across subsets of test data presented in Funnel Plot.
Author: Szymon Maksymiuk [aut, cre] ,
Przemyslaw Biecek [aut] ,
Hubert Baniecki [aut],
Anna Kozak [ctb]
Maintainer: Szymon Maksymiuk <sz.maksymiuk@gmail.com>
Diff between DALEXtra versions 2.2.1 dated 2022-06-14 and 2.3.0 dated 2023-05-25
DALEXtra-2.2.1/DALEXtra/R/on_attach.R |only DALEXtra-2.3.0/DALEXtra/DESCRIPTION | 14 ++--- DALEXtra-2.3.0/DALEXtra/MD5 | 25 +++++----- DALEXtra-2.3.0/DALEXtra/NAMESPACE | 1 DALEXtra-2.3.0/DALEXtra/NEWS.md | 5 ++ DALEXtra-2.3.0/DALEXtra/R/create_env.R | 52 +++++----------------- DALEXtra-2.3.0/DALEXtra/R/explain_keras.R | 1 DALEXtra-2.3.0/DALEXtra/R/explain_mlr.R | 2 DALEXtra-2.3.0/DALEXtra/R/explain_mlr3.R | 4 + DALEXtra-2.3.0/DALEXtra/R/explain_scikitlearn.R | 1 DALEXtra-2.3.0/DALEXtra/R/explain_tidymodels.R | 3 - DALEXtra-2.3.0/DALEXtra/man/explain_mlr.Rd | 2 DALEXtra-2.3.0/DALEXtra/man/explain_mlr3.Rd | 2 DALEXtra-2.3.0/DALEXtra/man/explain_tidymodels.Rd | 3 - 14 files changed, 50 insertions(+), 65 deletions(-)
Title: Nonlinear Mixed Effects Models in Population PK/PD, Estimation
Routines
Description: Fit and compare nonlinear mixed-effects models in
differential equations with flexible dosing information commonly seen
in pharmacokinetics and pharmacodynamics (Almquist, Leander, and
Jirstrand 2015 <doi:10.1007/s10928-015-9409-1>). Differential equation
solving is by compiled C code provided in the 'rxode2' package (Wang,
Hallow, and James 2015 <doi:10.1002/psp4.12052>).
Author: Matthew Fidler [aut, cre] ,
Yuan Xiong [aut],
Rik Schoemaker [aut] ,
Justin Wilkins [aut] ,
Wenping Wang [aut],
Robert Leary [ctb],
Mason McComb [ctb] ,
Vipul Mann [aut],
Mirjam Trame [ctb],
Mahmoud Abdelwahab [ctb],
Teun Post [ctb],
Richard Hooijmai [...truncated...]
Maintainer: Matthew Fidler <matt.fidler@novartis.com>
Diff between nlmixr2est versions 2.1.5 dated 2023-04-22 and 2.1.6 dated 2023-05-25
DESCRIPTION | 20 ++++++------ MD5 | 52 ++++++++++++++++++--------------- NEWS.md | 28 +++++++++++++++--- R/addCwres.R | 6 ++- R/augPred.R | 19 +++++++++++- R/cov.R | 20 +++++------- R/focei.R | 12 ------- R/foceiControl.R | 8 ++--- R/nlme.R | 5 +-- R/nlmixr2.R | 3 + R/nlmixr2Est.R | 3 + R/nlmixr2Keywords.R |only R/nlmixr2_md5.R | 2 - R/nlmixr2output.R | 4 ++ R/nmObjGet.R | 6 +++ R/saem.R | 20 ++++++++++++ R/saemControl.R | 57 ++++++++++++++++++------------------- data |only man/foceiControl.Rd | 5 +++ man/nlmixr2.Rd | 45 +++++++++++++++++++++++++++++ man/nlmixr2Keywords.Rd |only man/nlmixr2NlmeControl.Rd | 8 ++++- man/rmdhunks |only man/saemControl.Rd | 6 +++ man/setCov.Rd | 6 +++ tests/testthat/test-addCwres.R |only tests/testthat/test-augpred.R | 50 +++++++++++++++++++++++++++++++- tests/testthat/test-saem-theo_sd.R | 1 tests/testthat/test-vpcSim.R | 25 ++++++++++++++++ 29 files changed, 307 insertions(+), 104 deletions(-)
Title: R Interface for the 'H2O' Scalable Machine Learning Platform
Description: R interface for 'H2O', the scalable open source machine learning
platform that offers parallelized implementations of many supervised and
unsupervised machine learning algorithms such as Generalized Linear
Models (GLM), Gradient Boosting Machines (including XGBoost), Random Forests,
Deep Neural Networks (Deep Learning), Stacked Ensembles, Naive Bayes,
Generalized Additive Models (GAM), ANOVA GLM, Cox Proportional Hazards, K-Means, PCA, ModelSelection,
Word2Vec, as well as a fully automatic machine learning algorithm (H2O AutoML).
Author: Tomas Fryda [aut, cre],
Erin LeDell [aut],
Navdeep Gill [aut],
Spencer Aiello [aut],
Anqi Fu [aut],
Arno Candel [aut],
Cliff Click [aut],
Tom Kraljevic [aut],
Tomas Nykodym [aut],
Patrick Aboyoun [aut],
Michal Kurka [aut],
Michal Malohlava [aut],
Seb [...truncated...]
Maintainer: Tomas Fryda <tomas.fryda@h2o.ai>
Diff between h2o versions 3.40.0.1 dated 2023-02-24 and 3.40.0.4 dated 2023-05-25
h2o-3.40.0.1/h2o/inst/java |only h2o-3.40.0.4/h2o/DESCRIPTION | 28 ++++++------ h2o-3.40.0.4/h2o/MD5 | 22 +++++---- h2o-3.40.0.4/h2o/NAMESPACE | 5 ++ h2o-3.40.0.4/h2o/R/explain.R | 12 +++-- h2o-3.40.0.4/h2o/R/gam.R | 41 ++++++++++++++++++ h2o-3.40.0.4/h2o/R/models.R | 35 ++++++++------- h2o-3.40.0.4/h2o/R/modelselection.R | 16 +++++-- h2o-3.40.0.4/h2o/inst/buildnum.txt | 2 h2o-3.40.0.4/h2o/man/h2o-package.Rd | 6 +- h2o-3.40.0.4/h2o/man/h2o.gam.Rd | 4 + h2o-3.40.0.4/h2o/man/h2o.get_gam_knot_column_names.Rd |only h2o-3.40.0.4/h2o/man/h2o.get_knot_locations.Rd |only h2o-3.40.0.4/h2o/man/h2o.modelSelection.Rd | 10 +++- 14 files changed, 129 insertions(+), 52 deletions(-)
Title: Coroutines: Generators / Yield, Async / Await, and Streams
Description: Write sequential-looking code that pauses and resumes.
gen() creates a generator, an iterator that returns a
value and pauses each time it reaches a yield() call.
async() creates a promise, which runs until it reaches
a call to await(), then resumes when information is available.
These work similarly to generator and async constructs
from 'Python' or 'JavaScript'. Objects produced are
compatible with the 'iterators' and 'promises' packages.
Version 0.3 supports on.exit, single-step debugging,
stream() for making asynchronous iterators, and
delimited goto() in switch() calls.
Author: Peter Meilstrup [aut, cre]
Maintainer: Peter Meilstrup <peter.meilstrup@gmail.com>
Diff between async versions 0.3.1 dated 2023-03-22 and 0.3.2 dated 2023-05-25
async-0.3.1/async/R/iteror.R |only async-0.3.1/async/man/ilimit.Rd |only async-0.3.1/async/man/iseq.Rd |only async-0.3.1/async/man/iteror.Rd |only async-0.3.2/async/DESCRIPTION | 23 async-0.3.2/async/MD5 | 126 - async-0.3.2/async/NAMESPACE | 19 async-0.3.2/async/NEWS.md | 6 async-0.3.2/async/R/all_names.R | 49 async-0.3.2/async/R/async-package.R | 11 async-0.3.2/async/R/async.R | 18 async-0.3.2/async/R/channel.R | 213 +- async-0.3.2/async/R/collect.R | 38 async-0.3.2/async/R/coroutine.R | 19 async-0.3.2/async/R/cps.R | 12 async-0.3.2/async/R/gen.R | 38 async-0.3.2/async/R/inline.R |only async-0.3.2/async/R/pump.R | 26 async-0.3.2/async/R/run.R | 2 async-0.3.2/async/R/signals.R | 1 async-0.3.2/async/R/stream.R | 46 async-0.3.2/async/R/syntax.R | 5 async-0.3.2/async/R/util.R | 80 - async-0.3.2/async/R/walk.R | 10 async-0.3.2/async/README.md | 28 async-0.3.2/async/build/vignette.rds |binary async-0.3.2/async/inst/doc/README.R | 4 async-0.3.2/async/inst/doc/README.Rmd | 19 async-0.3.2/async/inst/doc/README.html | 19 async-0.3.2/async/inst/doc/clapping.R | 9 async-0.3.2/async/inst/doc/clapping.Rmd | 24 async-0.3.2/async/inst/doc/clapping.html | 37 async-0.3.2/async/inst/doc/language.R | 16 async-0.3.2/async/inst/doc/language.Rmd | 33 async-0.3.2/async/inst/doc/language.html | 28 async-0.3.2/async/inst/doc/spider.R |only async-0.3.2/async/inst/doc/spider.Rmd |only async-0.3.2/async/inst/doc/spider.html |only async-0.3.2/async/man/channel.Rd | 69 async-0.3.2/async/man/collect.Rd | 33 async-0.3.2/async/man/combine.Rd | 2 async-0.3.2/async/man/gen.Rd | 2 async-0.3.2/async/man/nextThen.Rd | 4 async-0.3.2/async/man/reexports.Rd |only async-0.3.2/async/man/run.Rd | 2 async-0.3.2/async/tests/testthat/test-01-syntax.R | 17 async-0.3.2/async/tests/testthat/test-02-cps.R | 4 async-0.3.2/async/tests/testthat/test-03-gen.R | 34 async-0.3.2/async/tests/testthat/test-04-async.R | 2 async-0.3.2/async/tests/testthat/test-0405-channel.R |only async-0.3.2/async/tests/testthat/test-041-stream.R | 227 -- async-0.3.2/async/tests/testthat/test-042-stream-sendNow.R | 227 -- async-0.3.2/async/tests/testthat/test-044-gc.R |only async-0.3.2/async/tests/testthat/test-07-graph.R | 9 async-0.3.2/async/tests/testthat/test-08-trans.R | 13 async-0.3.2/async/tests/testthat/test-085-debugging.R | 12 async-0.3.2/async/tests/testthat/test-09-munge.R | 2 async-0.3.2/async/tests/testthat/test-10-level-1.R | 4 async-0.3.2/async/tests/testthat/test-11-gen-level-1.R | 34 async-0.3.2/async/tests/testthat/test-11-inlining.R |only async-0.3.2/async/tests/testthat/test-12-async-level-1.R | 2 async-0.3.2/async/tests/testthat/test-121-stream-level-1.R | 227 -- async-0.3.2/async/tests/testthat/test-124-gc-level-1.R |only async-0.3.2/async/tests/testthat/test-145-debugging-level-1.R | 12 async-0.3.2/async/tests/testthat/test-15-graph-level-1.R | 9 async-0.3.2/async/vignettes/README.Rmd | 19 async-0.3.2/async/vignettes/clapping.Rmd | 24 async-0.3.2/async/vignettes/file_dataset.svg | 788 +++++----- async-0.3.2/async/vignettes/language.Rmd | 33 async-0.3.2/async/vignettes/spider.Rmd |only async-0.3.2/async/vignettes/spidered.rds |only async-0.3.2/async/vignettes/spidered_async.rds |only 72 files changed, 1346 insertions(+), 1424 deletions(-)
Title: Matching on Generalized Propensity Scores with Continuous
Exposures
Description: Provides a framework for estimating causal effects of a continuous
exposure using observational data, and implementing matching and weighting
on the generalized propensity score.
Wu, X., Mealli, F., Kioumourtzoglou, M.A., Dominici, F. and Braun, D., 2022.
Matching on generalized propensity scores with continuous exposures. Journal
of the American Statistical Association, pp.1-29.
Author: Naeem Khoshnevis [aut, cre] ,
Xiao Wu [aut] ,
Danielle Braun [aut]
Maintainer: Naeem Khoshnevis <nkhoshnevis@g.harvard.edu>
Diff between CausalGPS versions 0.3.1 dated 2023-05-16 and 0.4.0 dated 2023-05-25
CausalGPS-0.3.1/CausalGPS/R/causalgps_smooth.R |only CausalGPS-0.3.1/CausalGPS/R/estimate_hat_vals.R |only CausalGPS-0.3.1/CausalGPS/R/matching_l1.R |only CausalGPS-0.3.1/CausalGPS/man/matching_l1.Rd |only CausalGPS-0.3.1/CausalGPS/tests/testthat/test-matching_l1.R |only CausalGPS-0.4.0/CausalGPS/DESCRIPTION | 8 CausalGPS-0.4.0/CausalGPS/MD5 | 171 +-- CausalGPS-0.4.0/CausalGPS/NEWS.md | 30 CausalGPS-0.4.0/CausalGPS/R/RcppExports.R | 4 CausalGPS-0.4.0/CausalGPS/R/absolute_corr_fun.R | 8 CausalGPS-0.4.0/CausalGPS/R/absolute_weighted_corr_fun.R | 20 CausalGPS-0.4.0/CausalGPS/R/check_arguments.R | 38 CausalGPS-0.4.0/CausalGPS/R/check_covar_balance.R | 32 CausalGPS-0.4.0/CausalGPS/R/check_kolmogorov_smirnov.R | 12 CausalGPS-0.4.0/CausalGPS/R/compile_pseudo_pop.R | 38 CausalGPS-0.4.0/CausalGPS/R/compute_risk.R | 17 CausalGPS-0.4.0/CausalGPS/R/create_matching.R | 58 - CausalGPS-0.4.0/CausalGPS/R/create_weighting.R | 9 CausalGPS-0.4.0/CausalGPS/R/estimate_gps.R | 116 +- CausalGPS-0.4.0/CausalGPS/R/estimate_npmetric_erf.R | 53 - CausalGPS-0.4.0/CausalGPS/R/estimate_pmetric_erf.R | 66 - CausalGPS-0.4.0/CausalGPS/R/estimate_semipmetric_erf.R | 53 - CausalGPS-0.4.0/CausalGPS/R/generate_pseudo_pop.R | 237 +++- CausalGPS-0.4.0/CausalGPS/R/generate_synthetic_data.R | 153 ++- CausalGPS-0.4.0/CausalGPS/R/matching_fn.R |only CausalGPS-0.4.0/CausalGPS/R/smooth_erf.R | 183 +++ CausalGPS-0.4.0/CausalGPS/R/trim_gps.R |only CausalGPS-0.4.0/CausalGPS/README.md | 69 + CausalGPS-0.4.0/CausalGPS/inst/doc/CausalGPS.Rmd | 43 CausalGPS-0.4.0/CausalGPS/inst/doc/CausalGPS.html | 130 +- CausalGPS-0.4.0/CausalGPS/inst/doc/Developers-Guide.html | 80 - CausalGPS-0.4.0/CausalGPS/inst/doc/Frequently-Asked-Questions.Rmd | 10 CausalGPS-0.4.0/CausalGPS/inst/doc/Frequently-Asked-Questions.html | 17 CausalGPS-0.4.0/CausalGPS/inst/doc/Generating-Pseudo-Population.Rmd | 12 CausalGPS-0.4.0/CausalGPS/inst/doc/Generating-Pseudo-Population.html | 19 CausalGPS-0.4.0/CausalGPS/inst/doc/Singularity-Image.html | 62 - CausalGPS-0.4.0/CausalGPS/inst/doc/Synthetic-Medicare.R | 183 +-- CausalGPS-0.4.0/CausalGPS/inst/doc/Synthetic-Medicare.Rmd | 183 +-- CausalGPS-0.4.0/CausalGPS/inst/doc/Synthetic-Medicare.html | 477 +++++----- CausalGPS-0.4.0/CausalGPS/inst/doc/Testing-the-Package.Rmd | 41 CausalGPS-0.4.0/CausalGPS/inst/doc/Testing-the-Package.html | 261 ++--- CausalGPS-0.4.0/CausalGPS/man/absolute_corr_fun.Rd | 3 CausalGPS-0.4.0/CausalGPS/man/absolute_weighted_corr_fun.Rd | 8 CausalGPS-0.4.0/CausalGPS/man/check_args.Rd | 2 CausalGPS-0.4.0/CausalGPS/man/check_args_estimate_gps.Rd | 6 CausalGPS-0.4.0/CausalGPS/man/check_covar_balance.Rd | 32 CausalGPS-0.4.0/CausalGPS/man/check_kolmogorov_smirnov.Rd | 2 CausalGPS-0.4.0/CausalGPS/man/compile_pseudo_pop.Rd | 37 CausalGPS-0.4.0/CausalGPS/man/compute_risk.Rd | 5 CausalGPS-0.4.0/CausalGPS/man/create_matching.Rd | 11 CausalGPS-0.4.0/CausalGPS/man/create_weighting.Rd | 2 CausalGPS-0.4.0/CausalGPS/man/estimate_gps.Rd | 33 CausalGPS-0.4.0/CausalGPS/man/estimate_hat_vals.Rd | 2 CausalGPS-0.4.0/CausalGPS/man/estimate_npmetric_erf.Rd | 18 CausalGPS-0.4.0/CausalGPS/man/estimate_pmetric_erf.Rd | 20 CausalGPS-0.4.0/CausalGPS/man/estimate_semipmetric_erf.Rd | 16 CausalGPS-0.4.0/CausalGPS/man/generate_kernel.Rd | 2 CausalGPS-0.4.0/CausalGPS/man/generate_pseudo_pop.Rd | 58 - CausalGPS-0.4.0/CausalGPS/man/generate_syn_data.Rd | 51 - CausalGPS-0.4.0/CausalGPS/man/matching_fn.Rd |only CausalGPS-0.4.0/CausalGPS/man/preprocess_data.Rd |only CausalGPS-0.4.0/CausalGPS/man/smooth_erf.Rd | 5 CausalGPS-0.4.0/CausalGPS/man/smooth_erf_kernsmooth.Rd |only CausalGPS-0.4.0/CausalGPS/man/smooth_erf_locpol.Rd |only CausalGPS-0.4.0/CausalGPS/man/trim_gps.Rd |only CausalGPS-0.4.0/CausalGPS/man/w_fun.Rd | 2 CausalGPS-0.4.0/CausalGPS/src/RcppExports.cpp | 16 CausalGPS-0.4.0/CausalGPS/src/compute_closest_wgps_helper.cpp | 25 CausalGPS-0.4.0/CausalGPS/src/compute_closest_wgps_helper_no_sc.cpp | 19 CausalGPS-0.4.0/CausalGPS/src/compute_closest_wgps_helper_sequential.cpp |only CausalGPS-0.4.0/CausalGPS/src/compute_closest_wgps_no_sc_binary_search.cpp | 5 CausalGPS-0.4.0/CausalGPS/tests/testthat/test-CausalGPS_smooth.R | 6 CausalGPS-0.4.0/CausalGPS/tests/testthat/test-absolute_corr_fun.R | 19 CausalGPS-0.4.0/CausalGPS/tests/testthat/test-absolute_weighted_corr_fun.R | 3 CausalGPS-0.4.0/CausalGPS/tests/testthat/test-check_arguments.R | 39 CausalGPS-0.4.0/CausalGPS/tests/testthat/test-check_covar_balance.R | 45 CausalGPS-0.4.0/CausalGPS/tests/testthat/test-check_kolmogorov_smirnov.R | 20 CausalGPS-0.4.0/CausalGPS/tests/testthat/test-compile_pseudo_pop.R | 47 CausalGPS-0.4.0/CausalGPS/tests/testthat/test-create_weighting.R | 49 - CausalGPS-0.4.0/CausalGPS/tests/testthat/test-estimate_gps.R | 135 ++ CausalGPS-0.4.0/CausalGPS/tests/testthat/test-estimate_hat_vals.R | 2 CausalGPS-0.4.0/CausalGPS/tests/testthat/test-estimate_npmetric_erf.R | 32 CausalGPS-0.4.0/CausalGPS/tests/testthat/test-estimate_pmetric_erf.R | 12 CausalGPS-0.4.0/CausalGPS/tests/testthat/test-estimate_semipmetric_erf.R | 12 CausalGPS-0.4.0/CausalGPS/tests/testthat/test-generate_pseudo_pop.R | 281 ++++- CausalGPS-0.4.0/CausalGPS/tests/testthat/test-generate_synthetic_data.R | 6 CausalGPS-0.4.0/CausalGPS/tests/testthat/test-matching_fn.R |only CausalGPS-0.4.0/CausalGPS/tests/testthat/test-smooth_erf.R | 4 CausalGPS-0.4.0/CausalGPS/tests/testthat/test-trim_gps.R |only CausalGPS-0.4.0/CausalGPS/vignettes/CausalGPS.Rmd | 43 CausalGPS-0.4.0/CausalGPS/vignettes/Frequently-Asked-Questions.Rmd | 10 CausalGPS-0.4.0/CausalGPS/vignettes/Generating-Pseudo-Population.Rmd | 12 CausalGPS-0.4.0/CausalGPS/vignettes/Synthetic-Medicare.Rmd | 183 +-- CausalGPS-0.4.0/CausalGPS/vignettes/Testing-the-Package.Rmd | 41 94 files changed, 2503 insertions(+), 1771 deletions(-)
Title: Download Data from Bank of Spain
Description: Tools to download data series from 'Banco de España' ('BdE')
on 'tibble' format. 'Banco de España' is the national central bank
and, within the framework of the Single Supervisory Mechanism ('SSM'),
the supervisor of the Spanish banking system along with the European
Central Bank. This package is in no way sponsored endorsed or
administered by 'Banco de España'.
Author: Diego H. Herrero [aut, cre, cph]
Maintainer: Diego H. Herrero <dev.dieghernan@gmail.com>
Diff between tidyBdE versions 0.3.2 dated 2023-04-01 and 0.3.3 dated 2023-05-25
DESCRIPTION | 8 - MD5 | 26 ++--- NEWS.md | 200 +++++++++++++++++++++---------------------- R/bde_check_access.R | 2 R/catalogs.R | 4 README.md | 4 build/vignette.rds |binary inst/doc/tidyBdE.Rmd | 2 inst/doc/tidyBdE.html | 2 man/bde_catalog_load.Rd | 2 man/bde_catalog_update.Rd | 2 man/bde_check_access.Rd | 2 tests/testthat/test-series.R | 5 - vignettes/tidyBdE.Rmd | 2 14 files changed, 132 insertions(+), 129 deletions(-)
Title: 'Stata' Markdown
Description: Settings and functions to extend the 'knitr' 'Stata' engine.
Author: Doug Hemken [aut, cre] ,
Tom Palmer [ctb] ,
Philipp Lepert [ctb]
Maintainer: Doug Hemken <dehemken@wisc.edu>
Diff between Statamarkdown versions 0.7.2 dated 2023-02-15 and 0.7.4 dated 2023-05-25
DESCRIPTION | 10 +++++----- MD5 | 10 +++++----- R/find_stata.r | 6 ++++-- R/stata_engine.r | 13 ++++++++++--- README.md | 18 ++++++++++++++---- inst/README.md | 18 ++++++++++++++---- 6 files changed, 52 insertions(+), 23 deletions(-)
Title: Climate AEMET Tools
Description: Tools to download the climatic data of the Spanish
Meteorological Agency (AEMET) directly from R using their API and
create scientific graphs (climate charts, trend analysis of climate
time series, temperature and precipitation anomalies maps, warming
stripes graphics, climatograms, etc.).
Author: Manuel Pizarro [aut, cph] ,
Diego Hernangomez [aut, cre] ,
Gema Fernandez-Aviles [aut]
Maintainer: Diego Hernangomez <diego.hernangomezherrero@gmail.com>
Diff between climaemet versions 1.1.0 dated 2023-02-16 and 1.1.1 dated 2023-05-25
DESCRIPTION | 6 MD5 | 68 +-- NEWS.md | 5 R/aemet_api_key.R | 10 R/aemet_api_query.R | 525 +++++++++++++-------------- R/aemet_daily.R | 279 +++++++------- R/aemet_extremes.R | 117 ++---- R/aemet_last_obs.R | 85 ++-- R/aemet_monthly.R | 280 +++++++------- R/aemet_normal.R | 6 R/aemet_stations.R | 3 R/climatogram.R | 162 +++----- R/data.R | 19 R/helpers.R | 4 R/stripes.R | 689 +++++++++++++++++------------------- R/utils.R | 2 R/windrose.R | 231 +++++------- README.md | 50 +- build/vignette.rds |binary data/aemet_munic.rda |binary data/climaemet_9434_climatogram.rda |binary data/climaemet_9434_temp.rda |binary data/climaemet_9434_wind.rda |binary inst/WORDLIST | 20 - inst/doc/climaemet.Rmd | 36 + inst/doc/climaemet.html | 42 +- inst/doc/extending-climaemet.Rmd | 68 +-- inst/doc/extending-climaemet.html | 62 +-- man/climaemet_9434_climatogram.Rd | 10 man/climaemet_9434_temp.Rd | 8 man/figures/README-spatial-1.png |binary vignettes/climaemet.Rmd | 36 + vignettes/example-gif.gif |binary vignettes/extending-climaemet.Rmd | 68 +-- vignettes/spatial-1.png |binary 35 files changed, 1387 insertions(+), 1504 deletions(-)
Title: Structure for Organizing Monte Carlo Simulation Designs
Description: Provides tools to safely and efficiently organize and execute
Monte Carlo simulation experiments in R.
The package controls the structure and back-end of Monte Carlo simulation experiments
by utilizing a generate-analyse-summarise workflow. The workflow safeguards against
common simulation coding issues, such as automatically re-simulating non-convergent results,
prevents inadvertently overwriting simulation files, catches error and warning messages
during execution, and implicitly supports parallel processing.
For a pedagogical introduction to the package see
Sigal and Chalmers (2016) <doi:10.1080/10691898.2016.1246953>. For a more in-depth overview of
the package and its design philosophy see Chalmers and Adkins (2020) <doi:10.20982/tqmp.16.4.p248>.
Author: Phil Chalmers [aut, cre] ,
Matthew Sigal [ctb],
Ogreden Oguzhan [ctb]
Maintainer: Phil Chalmers <rphilip.chalmers@gmail.com>
Diff between SimDesign versions 2.10.1 dated 2023-02-01 and 2.11 dated 2023-05-25
DESCRIPTION | 6 MD5 | 63 + NAMESPACE | 9 NEWS.md | 36 + R/AnalyseIf.R | 8 R/Bradley1978.R |only R/Design.R | 15 R/GenerateIf.R |only R/PBA.R |only R/SimDesign.R | 1 R/SimFunctions.R | 270 ++++++- R/SimSolve.R |only R/runSimulation.R | 149 +++- R/summary_functions.R | 6 R/util.R | 233 ++++++ build/partial.rdb |binary build/vignette.rds |binary inst/doc/Catch_errors.R | 7 inst/doc/Catch_errors.Rmd | 24 inst/doc/Catch_errors.html | 1337 +++++++++++++++++++++++++++++++++++++- inst/doc/Fixed_obj_fun.html | 1305 ++++++++++++++++++++++++++++++++++++- inst/doc/MultipleAnalyses.html | 1338 +++++++++++++++++++++++++++++++++++++- inst/doc/Parallel-computing.html | 1299 ++++++++++++++++++++++++++++++++++++- inst/doc/Saving-results.html | 1339 +++++++++++++++++++++++++++++++++++++- inst/doc/SimDesign-intro.html | 1365 +++++++++++++++++++++++++++++++++++++-- man/AnalyseIf.Rd | 6 man/Bradley1978.Rd |only man/EDR.Rd | 2 man/GenerateIf.Rd |only man/PBA.Rd |only man/SimFunctions.Rd | 60 + man/SimSolve.Rd |only man/createDesign.Rd | 4 man/nc.Rd |only man/runSimulation.Rd | 38 - tests/tests/test-SimDesign.R | 5 vignettes/Catch_errors.Rmd | 24 37 files changed, 8593 insertions(+), 356 deletions(-)
Title: Reporting Tables
Description: Reporting tables often have structure that goes beyond simple
rectangular data. The 'rtables' package provides a framework for
declaring complex multi-level tabulations and then applying them to
data. This framework models both tabulation and the resulting tables
as hierarchical, tree-like objects which support sibling sub-tables,
arbitrary splitting or grouping of data in row and column dimensions,
cells containing multiple values, and the concept of contextual
summary computations. A convenient pipe-able interface is provided for
declaring table layouts and the corresponding computations, and then
applying them to data.
Author: Gabriel Becker [aut, cre],
Adrian Waddell [aut],
Daniel Sabanes Bove [ctb],
Maximilian Mordig [ctb],
Davide Garolini [ctb]
Maintainer: Gabriel Becker <gabembecker@gmail.com>
Diff between rtables versions 0.6.0 dated 2023-03-02 and 0.6.1 dated 2023-05-25
rtables-0.6.0/rtables/man/export_as_rtf.Rd |only rtables-0.6.0/rtables/man/export_as_txt.Rd |only rtables-0.6.0/rtables/man/vpaginate_table.Rd |only rtables-0.6.0/rtables/tests/unit_test_results.xml |only rtables-0.6.1/rtables/DESCRIPTION | 51 - rtables-0.6.1/rtables/MD5 | 124 ++-- rtables-0.6.1/rtables/NAMESPACE | 10 rtables-0.6.1/rtables/NEWS.md | 21 rtables-0.6.1/rtables/R/00tabletrees.R | 14 rtables-0.6.1/rtables/R/colby_constructors.R | 58 +- rtables-0.6.1/rtables/R/deprecated.R | 23 rtables-0.6.1/rtables/R/index_footnotes.R | 23 rtables-0.6.1/rtables/R/make_split_fun.R | 2 rtables-0.6.1/rtables/R/split_funs.R | 10 rtables-0.6.1/rtables/R/summary.R | 31 - rtables-0.6.1/rtables/R/tree_accessors.R | 22 rtables-0.6.1/rtables/R/tt_dotabulation.R | 2 rtables-0.6.1/rtables/R/tt_export.R | 275 +++------- rtables-0.6.1/rtables/R/tt_paginate.R | 105 +-- rtables-0.6.1/rtables/R/tt_pos_and_access.R | 216 +++---- rtables-0.6.1/rtables/R/tt_sort.R | 140 +++-- rtables-0.6.1/rtables/R/tt_toString.R | 127 +--- rtables-0.6.1/rtables/R/zzz_constants.R | 2 rtables-0.6.1/rtables/README.md | 12 rtables-0.6.1/rtables/inst/WORDLIST | 6 rtables-0.6.1/rtables/inst/doc/advanced_usage.html | 4 rtables-0.6.1/rtables/inst/doc/baseline.html | 4 rtables-0.6.1/rtables/inst/doc/clinical_trials.html | 6 rtables-0.6.1/rtables/inst/doc/custom_appearance.html | 4 rtables-0.6.1/rtables/inst/doc/format_precedence.html | 4 rtables-0.6.1/rtables/inst/doc/introduction.html | 39 - rtables-0.6.1/rtables/inst/doc/manual_table_construction.html | 4 rtables-0.6.1/rtables/inst/doc/sorting_pruning.html | 8 rtables-0.6.1/rtables/inst/doc/split_functions.Rmd | 4 rtables-0.6.1/rtables/inst/doc/split_functions.html | 7 rtables-0.6.1/rtables/inst/doc/subsetting_tables.html | 4 rtables-0.6.1/rtables/inst/doc/tabulation_concepts.html | 2 rtables-0.6.1/rtables/inst/doc/tabulation_dplyr.html | 4 rtables-0.6.1/rtables/inst/doc/title_footer.html | 205 +------ rtables-0.6.1/rtables/man/brackets.Rd | 70 -- rtables-0.6.1/rtables/man/cell_values.Rd | 17 rtables-0.6.1/rtables/man/custom_split_funs.Rd | 4 rtables-0.6.1/rtables/man/export_as_pdf.Rd | 38 - rtables-0.6.1/rtables/man/int_methods.Rd | 70 ++ rtables-0.6.1/rtables/man/make_col_row_df.Rd | 2 rtables-0.6.1/rtables/man/make_split_fun.Rd | 3 rtables-0.6.1/rtables/man/paginate.Rd | 15 rtables-0.6.1/rtables/man/reexports.Rd |only rtables-0.6.1/rtables/man/ref_fnotes.Rd | 6 rtables-0.6.1/rtables/man/row_paths_summary.Rd | 2 rtables-0.6.1/rtables/man/score_funs.Rd | 10 rtables-0.6.1/rtables/man/sort_at_path.Rd | 94 +++ rtables-0.6.1/rtables/man/split_cols_by_multivar.Rd | 8 rtables-0.6.1/rtables/man/split_rows_by_multivar.Rd |only rtables-0.6.1/rtables/man/trim_zero_rows.Rd | 2 rtables-0.6.1/rtables/man/tt_to_flextable.Rd | 5 rtables-0.6.1/rtables/tests/testthat/test-deprecated.R | 17 rtables-0.6.1/rtables/tests/testthat/test-exporters.R | 15 rtables-0.6.1/rtables/tests/testthat/test-header-footer.R | 2 rtables-0.6.1/rtables/tests/testthat/test-lyt-tabulation.R | 19 rtables-0.6.1/rtables/tests/testthat/test-pagination.R | 30 - rtables-0.6.1/rtables/tests/testthat/test-printing.R | 48 - rtables-0.6.1/rtables/tests/testthat/test-regressions.R | 26 rtables-0.6.1/rtables/tests/testthat/test-sort-prune.R | 29 - rtables-0.6.1/rtables/tests/testthat/test-split_funs.R | 57 ++ rtables-0.6.1/rtables/vignettes/split_functions.Rmd | 4 66 files changed, 1163 insertions(+), 1003 deletions(-)
Title: Clinical Trial Style Data Readout Listings
Description: Listings are often part of the submission of clinical trial
data in regulatory settings. We provide a framework for the specific
formatting features often used when displaying large datasets in that
context.
Author: Gabriel Becker [aut, cre],
Adrian Waddell [aut],
Joe Zhu [aut],
Davide Garolini [ctb],
Emily de la Rua [ctb],
Abinaya Yogasekaram [ctb],
F. Hoffmann-La Roche AG [cph, fnd]
Maintainer: Gabriel Becker <gabembecker@gmail.com>
Diff between rlistings versions 0.2.1 dated 2023-03-17 and 0.2.2 dated 2023-05-25
rlistings-0.2.1/rlistings/man/export_as_txt.Rd |only rlistings-0.2.1/rlistings/man/toString-listing_df-method.Rd |only rlistings-0.2.1/rlistings/tests/testthat/helper-rlistings.R |only rlistings-0.2.2/rlistings/DESCRIPTION | 12 rlistings-0.2.2/rlistings/MD5 | 33 - rlistings-0.2.2/rlistings/NAMESPACE | 1 rlistings-0.2.2/rlistings/NEWS.md | 3 rlistings-0.2.2/rlistings/R/listing_export.R | 148 -------- rlistings-0.2.2/rlistings/R/paginate_listing.R | 175 ++-------- rlistings-0.2.2/rlistings/R/rlistings.R | 2 rlistings-0.2.2/rlistings/R/rlistings_methods.R | 63 --- rlistings-0.2.2/rlistings/inst/WORDLIST | 3 rlistings-0.2.2/rlistings/inst/doc/rlistings.html | 30 - rlistings-0.2.2/rlistings/man/defunct.Rd |only rlistings-0.2.2/rlistings/man/listing_methods.Rd | 22 + rlistings-0.2.2/rlistings/man/paginate.Rd | 21 - rlistings-0.2.2/rlistings/man/reexports.Rd |only rlistings-0.2.2/rlistings/tests/testthat/setup.R | 5 rlistings-0.2.2/rlistings/tests/testthat/test-paginate_listing.R | 88 ++--- rlistings-0.2.2/rlistings/tests/testthat/test-print.R | 76 ++++ 20 files changed, 263 insertions(+), 419 deletions(-)
Title: Functions to Automate Downloading Geospatial Data Available from
Several Federated Data Sources
Description: Functions to automate downloading geospatial data available
from several federated data sources (mainly sources maintained by the
US Federal government). Currently, the package enables extraction from
seven datasets: The National Elevation Dataset digital elevation
models (1 and 1/3 arc-second; USGS); The National Hydrography Dataset
(USGS); The Soil Survey Geographic (SSURGO) database from the National
Cooperative Soil Survey (NCSS), which is led by the Natural Resources
Conservation Service (NRCS) under the USDA; the Global Historical
Climatology Network (GHCN), coordinated by National Climatic Data
Center at NOAA; the Daymet gridded estimates of daily weather
parameters for North America, version 3, available from the Oak Ridge
National Laboratory's Distributed Active Archive Center (DAAC); the
International Tree Ring Data Bank; and the National Land Cover
Database (NLCD).
Author: R. Kyle Bocinsky [aut, cre, cph],
Dylan Beaudette [ctb],
Scott Chamberlain [ctb, rev],
Jeffrey Hollister [ctb],
Julia Gustavsen [rev]
Maintainer: R. Kyle Bocinsky <bocinsky@gmail.com>
Diff between FedData versions 3.0.3 dated 2023-03-10 and 3.0.4 dated 2023-05-25
DESCRIPTION | 10 +++++----- MD5 | 22 +++++++++++----------- NEWS.md | 7 +++++++ R/GHCN_FUNCTIONS.R | 6 +++--- R/NHD_FUNCTIONS.R | 6 +++++- R/esri.R | 18 +++++++++++++++--- README.md | 6 +++--- man/figures/README-ITRDB-1.png |binary man/figures/README-NHD-1.png |binary man/figures/README-SSURGO-1.png |binary man/figures/README-SSURGO-area-1.png |binary tests/testthat/test.GHCN.R | 8 ++++---- 12 files changed, 53 insertions(+), 30 deletions(-)
Title: Treemap Visualization
Description: A treemap is a space-filling visualization of hierarchical
structures. This package offers great flexibility to draw treemaps.
Author: Martijn Tennekes [aut, cre],
Peter Ellis [ctb]
Maintainer: Martijn Tennekes <mtennekes@gmail.com>
Diff between treemap versions 2.4-3 dated 2021-08-22 and 2.4-4 dated 2023-05-25
DESCRIPTION | 11 - MD5 | 14 - NEWS | 3 R/datasets.R | 2 R/treemap.R | 8 build/vignette.rds |binary inst/doc/treemap-color_mapping.html | 380 ++++++++++++++---------------------- man/GNI2014.Rd | 2 8 files changed, 174 insertions(+), 246 deletions(-)
Title: Spatial Regression Analysis
Description: A collection of all the estimation functions for spatial cross-sectional models (on lattice/areal data using spatial weights matrices) contained up to now in 'spdep'. These model fitting functions include maximum likelihood methods for cross-sectional models proposed by 'Cliff' and 'Ord' (1973, ISBN:0850860369) and (1981, ISBN:0850860814), fitting methods initially described by 'Ord' (1975) <doi:10.1080/01621459.1975.10480272>. The models are further described by 'Anselin' (1988) <doi:10.1007/978-94-015-7799-1>. Spatial two stage least squares and spatial general method of moment models initially proposed by 'Kelejian' and 'Prucha' (1998) <doi:10.1023/A:1007707430416> and (1999) <doi:10.1111/1468-2354.00027> are provided. Impact methods and MCMC fitting methods proposed by 'LeSage' and 'Pace' (2009) <doi:10.1201/9781420064254> are implemented for the family of cross-sectional spatial regression models. Methods for fitting the log determinant term in maximu [...truncated...]
Author: Roger Bivand [cre, aut] ,
Gianfranco Piras [aut],
Luc Anselin [ctb],
Andrew Bernat [ctb],
Eric Blankmeyer [ctb],
Yongwan Chun [ctb],
Virgilio Gomez-Rubio [ctb],
Daniel Griffith [ctb],
Martin Gubri [ctb],
Rein Halbersma [ctb],
James LeSage [ctb],
Ange [...truncated...]
Maintainer: Roger Bivand <Roger.Bivand@nhh.no>
Diff between spatialreg versions 1.2-8 dated 2023-03-01 and 1.2-9 dated 2023-05-25
DESCRIPTION | 22 MD5 | 39 NAMESPACE | 1 NEWS.md | 14 R/ML_models.R | 29 R/SLX_WX.R | 166 --- R/impacts.R | 2 R/predict.sarlm.R | 12 R/sarlm_functions.R | 7 R/spautolm.R | 6 build/partial.rdb |binary build/vignette.rds |binary inst/doc/SpatialFiltering.html | 1553 ++++++++++++++++++++++++++++-- inst/doc/nb_igraph.html | 1712 +++++++++++++++++++++++++++++++--- inst/doc/sids_models.html | 1574 ++++++++++++++++++++++++++++--- inst/tinytest/test_Durbin.R | 44 inst/tinytest/test_SLX_no_intercept.R | 15 inst/tinytest/test_SLX_not_W.R | 8 inst/tinytest/test_TR_20_07_20.R |only man/SET_MCMC.Rd | 6 man/SLX.Rd | 7 21 files changed, 4622 insertions(+), 595 deletions(-)
Title: Non-Crossing Additive Regression Quantiles and Non-Parametric
Growth Charts
Description: Fits non-crossing regression quantiles as a function of linear covariates and multiple smooth terms, including varying coefficients, via B-splines with L1-norm difference penalties.
Random intercepts and variable selection are allowed via the lasso penalties.
The smoothing parameters are estimated as part of the model fitting, see Muggeo and others (2021) <doi:10.1177/1471082X20929802>. Monotonicity and concavity
constraints on the fitted curves are allowed, see Muggeo and others (2013) <doi:10.1007/s10651-012-0232-1>,
and also <doi:10.13140/RG.2.2.12924.85122> or <doi:10.13140/RG.2.2.29306.21445> some code examples.
Author: Vito M. R. Muggeo [aut, cre]
Maintainer: Vito M. R. Muggeo <vito.muggeo@unipa.it>
Diff between quantregGrowth versions 1.6-1 dated 2023-04-14 and 1.6-2 dated 2023-05-25
DESCRIPTION | 8 MD5 | 32 NAMESPACE | 2 NEWS | 9 R/gcrq.r | 1929 ++++++++++++++++++------------------------ R/ncross.rq.fitXB.r | 1755 ++++++++++++++++++-------------------- R/plot.gcrq.R | 12 R/ps.R | 2 R/vcov.gcrq.r | 2 inst/doc/quantregGrowth.R | 4 inst/doc/quantregGrowth.Rmd | 6 inst/doc/quantregGrowth.html | 26 man/gcrq.Rd | 2 man/ncross.rq.fitXB.Rd | 333 +++---- man/ps.Rd | 10 man/quantregGrowth-package.Rd | 4 vignettes/quantregGrowth.Rmd | 6 17 files changed, 1967 insertions(+), 2175 deletions(-)
More information about quantregGrowth at CRAN
Permanent link
Title: Crop Growing Degree Days and Agrometeorological Calculations
Description: Calculate agrometeorological variables for crops
including growing degree days (McMaster, GS & Wilhelm, WW
(1997) <doi:10.1016/S0168-1923(97)00027-0>), cumulative
rainfall, number of stress days and cumulative or mean
radiation and evaporation. Convert dates to day of year
and vice versa. Also, download curated and interpolated
Australian weather data from the Queensland Government
DES longpaddock website
<https://www.longpaddock.qld.gov.au/>. This data is
freely available under the Creative Commons 4.0 licence.
Author: Peter Baker [aut, cre] ,
Miranda Mortlock [aut]
Maintainer: Peter Baker <drpetebaker@gmail.com>
Diff between cropgrowdays versions 0.1.1 dated 2021-12-10 and 0.2.0 dated 2023-05-25
DESCRIPTION | 14 MD5 | 64 +-- NAMESPACE | 1 NEWS.md | 26 + R/cumulative.R | 16 R/daily_mean.R | 14 R/day_of_year.R | 13 R/get_multi_silodata.R | 4 R/get_silodata.R | 97 ++++- R/growing_degree_days.R | 18 - R/stress_days_over.R | 14 R/weather_extract.R | 23 - README.md | 143 ++++---- build/partial.rdb |binary build/vignette.rds |binary inst/doc/crop-grow-days.R | 23 - inst/doc/crop-grow-days.html | 587 +++++++++++++++++++++++++++-------- inst/doc/getting-weather-data.R | 1 inst/doc/getting-weather-data.Rmd | 12 inst/doc/getting-weather-data.html | 453 +++++++++++++++++++++------ man/cumulative.Rd | 12 man/daily_mean.Rd | 10 man/fragments/agro_met_calcs.Rmd | 30 + man/fragments/boonah_description.Rmd | 6 man/fragments/intro.Rmd | 8 man/get_multi_silodata.Rd | 10 man/get_silodata.Rd | 39 +- man/growing_degree_days.Rd | 10 man/stress_days_over.Rd | 10 man/weather_extract.Rd | 11 tests/testthat.R | 2 tests/testthat/test_weather_calcs.R | 58 +-- vignettes/getting-weather-data.Rmd | 12 33 files changed, 1240 insertions(+), 501 deletions(-)
Title: Count Transformation Models
Description: Count transformation models featuring
parameters interpretable as discrete hazard ratios, odds ratios,
reverse-time discrete hazard ratios, or transformed expectations.
An appropriate data transformation for a count outcome and
regression coefficients are simultaneously estimated by maximising
the exact discrete log-likelihood using the computational framework
provided in package 'mlt', technical details are given in
Siegfried & Hothorn (2020) <DOI:10.1111/2041-210X.13383>.
The package also contains an experimental implementation of
multivariate count transformation models with an application
to multi-species distribution models <arXiv:2201.13095>.
Author: Sandra Siegfried [aut, cre] ,
Luisa Barbanti [aut] ,
Torsten Hothorn [aut]
Maintainer: Sandra Siegfried <sandra.siegfried@uzh.ch>
Diff between cotram versions 0.4-2 dated 2022-11-01 and 0.4-4 dated 2023-05-25
cotram-0.4-2/cotram/R/mcotram.R |only cotram-0.4-2/cotram/demo |only cotram-0.4-2/cotram/man/mcotram.Rd |only cotram-0.4-2/cotram/tests/mcotram-Ex.R |only cotram-0.4-4/cotram/DESCRIPTION | 10 +++++----- cotram-0.4-4/cotram/MD5 | 26 +++++++++++--------------- cotram-0.4-4/cotram/NAMESPACE | 4 ++-- cotram-0.4-4/cotram/R/methods.R | 20 ++++++++++++++------ cotram-0.4-4/cotram/R/models.R | 4 ++-- cotram-0.4-4/cotram/build/partial.rdb |binary cotram-0.4-4/cotram/build/vignette.rds |binary cotram-0.4-4/cotram/data/spiders.rda |binary cotram-0.4-4/cotram/inst/CITATION | 4 ++-- cotram-0.4-4/cotram/inst/NEWS.Rd | 13 +++++++++++++ cotram-0.4-4/cotram/inst/doc/cotram.pdf |binary cotram-0.4-4/cotram/tests/Examples |only 16 files changed, 49 insertions(+), 32 deletions(-)
Title: Long Term Water Quality Trend Analysis
Description: Enable users to evaluate long-term trends using a Generalized
Additive Modeling (GAM) approach. The model development includes selecting a
GAM structure to describe nonlinear seasonally-varying changes over time,
incorporation of hydrologic variability via either a river flow or salinity,
the use of an intervention to deal with method or laboratory changes
suspected to impact data values, and representation of left- and
interval-censored data. The approach has been applied to water quality data
in the Chesapeake Bay, a major estuary on the east coast of the United
States to provide insights to a range of management- and research-focused
questions. Methodology described in Murphy (2019)
<doi:10.1016/j.envsoft.2019.03.027>.
Author: Rebecca Murphy, Elgin Perry, Jennifer Keisman, Jon Harcum, Erik W Leppo
Maintainer: Erik W Leppo <Erik.Leppo@tetratech.com>
Diff between baytrends versions 2.0.8 dated 2022-05-05 and 2.0.9 dated 2023-05-25
baytrends-2.0.8/baytrends/man/figures |only baytrends-2.0.9/baytrends/DESCRIPTION | 8 baytrends-2.0.9/baytrends/MD5 | 17 baytrends-2.0.9/baytrends/NEWS | 1715 +++++----- baytrends-2.0.9/baytrends/NEWS.md | 1715 +++++----- baytrends-2.0.9/baytrends/R/gamTest.r | 15 baytrends-2.0.9/baytrends/README.md | 21 baytrends-2.0.9/baytrends/build/vignette.rds |binary baytrends-2.0.9/baytrends/inst/doc/Detrending_Flow_and_Salinity_Data.html | 485 ++ baytrends-2.0.9/baytrends/inst/doc/Processing_Censored_Data.html | 558 ++- 10 files changed, 2584 insertions(+), 1950 deletions(-)
Title: Bayesian Models for Data from Unmarked Animals using 'Stan'
Description: Fit Bayesian hierarchical models of animal abundance and occurrence
via the 'rstan' package, the R interface to the 'Stan' C++ library.
Supported models include single-season occupancy, dynamic occupancy, and
N-mixture abundance models. Covariates on model parameters are specified
using a formula-based interface similar to package 'unmarked', while also
allowing for estimation of random slope and intercept terms. References:
Carpenter et al. (2017) <doi:10.18637/jss.v076.i01>;
Fiske and Chandler (2011) <doi:10.18637/jss.v043.i10>.
Author: Ken Kellner [cre, aut]
Maintainer: Ken Kellner <contact@kenkellner.com>
Diff between ubms versions 1.2.3 dated 2023-05-17 and 1.2.4 dated 2023-05-25
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ NEWS.md | 4 ++++ inst/doc/ubms.html | 20 ++++++++++---------- src/Makevars | 2 +- src/Makevars.win | 2 +- tests/testthat/test_ubmsFit_methods.R | 1 + 7 files changed, 27 insertions(+), 22 deletions(-)
Title: Diffusion Models R Analysis
Description: The implemented methods are: Standard Bass model, Generalized Bass model (with rectangular shock, exponential shock, and mixed shock. You can choose to add from 1 to 3 shocks), Guseo-Guidolin model and Variable Potential Market model, and UCRCD model. The Bass model consists of a simple differential equation that describes the process of how new products get adopted in a population, the Generalized Bass model is a generalization of the Bass model in which there is a "carrier" function x(t) that allows to change the speed of time sliding. In some real processes the reachable potential of the resource available in a temporal instant may appear to be not constant over time, because of this we use Variable Potential Market model, in which the Guseo-Guidolin has a particular specification for the market function. The UCRCD model (Unbalanced Competition and Regime Change Diachronic) is a diffusion model used to capture the dynamics of the competitive or collaborative transition.
Author: Savio Andrea, Zanghi Federico, Filippo Ziliotto, Bessi Alessandro
Maintainer: Savio Andrea <svandr97@gmail.com>
Diff between DIMORA versions 0.3.4 dated 2023-03-11 and 0.3.5 dated 2023-05-25
DESCRIPTION | 8 ++++---- MD5 | 6 ++++-- R/hello.R |only man/GGM.Rd | 2 +- man/hello.Rd |only 5 files changed, 9 insertions(+), 7 deletions(-)
Title: Microbial Community Ecology Data Analysis
Description: A series of statistical and plotting approaches in microbial community ecology based on the R6 class. The classes are designed for data preprocessing, taxa abundance plotting, alpha diversity analysis, beta diversity analysis, differential abundance test, null model analysis, network analysis, machine learning, environmental data analysis and functional analysis.
Author: Chi Liu [aut, cre],
Felipe R. P. Mansoldo [ctb],
Umer Zeeshan Ijaz [ctb],
Chenhao Li [ctb],
Yang Cao [ctb],
Minjie Yao [ctb],
Xiangzhen Li [ctb]
Maintainer: Chi Liu <liuchi0426@126.com>
Diff between microeco versions 0.17.0 dated 2023-05-02 and 0.19.0 dated 2023-05-25
DESCRIPTION | 6 - MD5 | 34 +++++----- R/microtable.R | 29 +++++--- R/trans_abund.R | 73 ++++++++++++++++------ R/trans_alpha.R | 103 +++++++++++++++++++++++-------- R/trans_diff.R | 124 ++++++++++++++++++++++++++------------ R/trans_env.R | 166 +++++++++++++++++++++++++++++++++------------------ R/trans_func.R | 36 +++++------ R/trans_network.R | 2 R/trans_venn.R | 14 ++-- data/dataset.RData |binary man/microtable.Rd | 18 +++-- man/trans_abund.Rd | 12 +++ man/trans_alpha.Rd | 29 +++++--- man/trans_diff.Rd | 51 +++++++++++---- man/trans_env.Rd | 30 +++++---- man/trans_network.Rd | 2 man/trans_venn.Rd | 4 - 18 files changed, 488 insertions(+), 245 deletions(-)
Title: Tidy and Geospatial Kernel Smoothing
Description: Extensions of the kernel smoothing functions from the 'ks' package for compatibility with the tidyverse and geospatial ecosystems <doi:10.48550/arXiv.2203.01686>.
Author: Tarn Duong [aut, cre]
Maintainer: Tarn Duong <tarn.duong@gmail.com>
Diff between eks versions 1.0.3 dated 2023-03-09 and 1.0.4 dated 2023-05-25
CHANGELOG | 4 DESCRIPTION | 8 - MD5 | 14 - R/sf-ks-prelim.R | 2 inst/doc/tidysf_kde.R | 27 +-- inst/doc/tidysf_kde.Rmd | 27 +-- inst/doc/tidysf_kde.html | 364 +++++------------------------------------------ vignettes/tidysf_kde.Rmd | 27 +-- 8 files changed, 100 insertions(+), 373 deletions(-)
Title: Bayesian Inference and Model Selection for Stochastic Epidemics
Description: Bayesian analysis for stochastic extensions of non-linear
dynamic systems using advanced computational algorithms. Described in Bouranis, L.,
Demiris, N., Kalogeropoulos, K., and Ntzoufras, I. (2022) <arXiv:2211.15229>.
Author: Lampros Bouranis [aut, cre, cph]
,
European Union [fnd]
Maintainer: Lampros Bouranis <bernadette.aueb@gmail.com>
Diff between Bernadette versions 1.1.1 dated 2023-05-18 and 1.1.2 dated 2023-05-25
DESCRIPTION | 6 ++-- MD5 | 42 ++++++++++++++++---------------- R/misc.R | 7 ++++- R/posterior_contactmatrix.R | 16 +++++++----- R/posterior_infections.R | 37 +++++++++++++++++----------- R/posterior_mortality.R | 37 +++++++++++++++++----------- R/posterior_rt.R | 40 ++++++++++++++++++++++++------- R/posterior_transmrate.R | 30 ++++++++++++++--------- R/stan_igbm.R | 2 - R/stan_igbm.fit.R | 50 ++------------------------------------- R/summary.stangbm.R | 48 +++++++++++++++++++++---------------- inst/doc/Bernadette.html | 2 - man/plot_posterior_cm.Rd | 8 ++++-- man/plot_posterior_infections.Rd | 5 ++- man/plot_posterior_mortality.Rd | 5 ++- man/plot_posterior_rt.Rd | 3 +- man/plot_posterior_transmrate.Rd | 3 +- man/posterior_infections.Rd | 12 ++++++--- man/posterior_mortality.Rd | 12 ++++++--- man/posterior_rt.Rd | 16 ++++++++++-- man/posterior_transmrate.Rd | 8 ++++-- man/summary.stanigbm.Rd | 10 ++++++- 22 files changed, 227 insertions(+), 172 deletions(-)
Title: Rational Approximations of Fractional Stochastic Partial
Differential Equations
Description: Functions that compute rational approximations of fractional elliptic stochastic partial differential equations. The package also contains functions for common statistical usage of these approximations. The main references for rSPDE are Bolin, Simas and Xiong (2023) <doi:10.48550/arXiv.2209.04670> for the covariance-based method and in Bolin and Kirchner (2020) <doi:10.1080/10618600.2019.1665537> for the operator-based rational approximation. These can be generated by the citation function in R.
Author: David Bolin [cre, aut],
Alexandre Simas [aut],
Finn Lindgren [ctb]
Maintainer: David Bolin <davidbolin@gmail.com>
Diff between rSPDE versions 2.2.0 dated 2023-04-12 and 2.3.1 dated 2023-05-25
rSPDE-2.2.0/rSPDE/man/matern.loglike.Rd |only rSPDE-2.3.1/rSPDE/DESCRIPTION | 10 rSPDE-2.3.1/rSPDE/MD5 | 109 - rSPDE-2.3.1/rSPDE/NAMESPACE | 13 rSPDE-2.3.1/rSPDE/NEWS.md | 10 rSPDE-2.3.1/rSPDE/R/fractional.computations.R | 1135 +++++----- rSPDE-2.3.1/rSPDE/R/fractional.operators.R | 494 ++++ rSPDE-2.3.1/rSPDE/R/inla_rspde.R | 52 rSPDE-2.3.1/rSPDE/R/inlabru_rspde.R | 21 rSPDE-2.3.1/rSPDE/R/rSPDE.R | 2 rSPDE-2.3.1/rSPDE/R/rspde_lme.R |only rSPDE-2.3.1/rSPDE/R/util.R | 169 + rSPDE-2.3.1/rSPDE/inst/doc/build_source.html | 94 rSPDE-2.3.1/rSPDE/inst/doc/build_source.html.asis | 3 rSPDE-2.3.1/rSPDE/inst/doc/rSPDE.html | 221 -- rSPDE-2.3.1/rSPDE/inst/doc/rSPDE.html.asis | 3 rSPDE-2.3.1/rSPDE/inst/doc/rspde_base.html | 593 +++-- rSPDE-2.3.1/rSPDE/inst/doc/rspde_base.html.asis | 3 rSPDE-2.3.1/rSPDE/inst/doc/rspde_cov.html | 1143 ++++++----- rSPDE-2.3.1/rSPDE/inst/doc/rspde_cov.html.asis | 3 rSPDE-2.3.1/rSPDE/inst/doc/rspde_inla.html | 367 +-- rSPDE-2.3.1/rSPDE/inst/doc/rspde_inla.html.asis | 3 rSPDE-2.3.1/rSPDE/inst/doc/rspde_inlabru.html | 182 - rSPDE-2.3.1/rSPDE/inst/doc/rspde_inlabru.html.asis | 3 rSPDE-2.3.1/rSPDE/man/bru_get_mapper.inla_rspde.Rd | 3 rSPDE-2.3.1/rSPDE/man/construct.spde.matern.loglike.Rd | 16 rSPDE-2.3.1/rSPDE/man/cross_validation.Rd | 19 rSPDE-2.3.1/rSPDE/man/get.initial.values.rSPDE.Rd | 3 rSPDE-2.3.1/rSPDE/man/matern.operators.Rd | 54 rSPDE-2.3.1/rSPDE/man/precision.CBrSPDEobj.Rd | 6 rSPDE-2.3.1/rSPDE/man/predict.CBrSPDEobj.Rd | 9 rSPDE-2.3.1/rSPDE/man/predict.rSPDEobj.Rd | 8 rSPDE-2.3.1/rSPDE/man/predict.rspde_lme.Rd |only rSPDE-2.3.1/rSPDE/man/rSPDE.construct.matern.loglike.Rd | 34 rSPDE-2.3.1/rSPDE/man/rSPDE.loglike.Rd | 11 rSPDE-2.3.1/rSPDE/man/rSPDE.matern.loglike.Rd | 14 rSPDE-2.3.1/rSPDE/man/rspde.make.index.Rd | 3 rSPDE-2.3.1/rSPDE/man/rspde.matern.precision.Rd | 6 rSPDE-2.3.1/rSPDE/man/rspde.matern.precision.integer.Rd | 5 rSPDE-2.3.1/rSPDE/man/rspde.result.Rd | 3 rSPDE-2.3.1/rSPDE/man/rspde_lme.Rd |only rSPDE-2.3.1/rSPDE/man/simulate.CBrSPDEobj.Rd | 10 rSPDE-2.3.1/rSPDE/man/simulate.rSPDEobj.Rd | 6 rSPDE-2.3.1/rSPDE/man/spde.matern.loglike.Rd | 17 rSPDE-2.3.1/rSPDE/man/spde.matern.operators.Rd | 20 rSPDE-2.3.1/rSPDE/man/summary.CBrSPDEobj.Rd | 6 rSPDE-2.3.1/rSPDE/man/summary.rspde_lme.Rd |only rSPDE-2.3.1/rSPDE/man/summary.rspde_result.Rd | 3 rSPDE-2.3.1/rSPDE/man/update.CBrSPDEobj.Rd | 35 rSPDE-2.3.1/rSPDE/man/update.rSPDEobj.Rd | 24 rSPDE-2.3.1/rSPDE/tests/testthat/test.CBrSPDE.R | 48 rSPDE-2.3.1/rSPDE/tests/testthat/test.fractional.operators.R | 49 rSPDE-2.3.1/rSPDE/vignettes/build_source.html.asis | 3 rSPDE-2.3.1/rSPDE/vignettes/rSPDE.html.asis | 3 rSPDE-2.3.1/rSPDE/vignettes/rspde_base.html.asis | 3 rSPDE-2.3.1/rSPDE/vignettes/rspde_cov.html.asis | 3 rSPDE-2.3.1/rSPDE/vignettes/rspde_inla.html.asis | 3 rSPDE-2.3.1/rSPDE/vignettes/rspde_inlabru.html.asis | 3 58 files changed, 2930 insertions(+), 2133 deletions(-)
Title: Financial Time Series Objects (Rmetrics)
Description: 'S4' classes and various tools for financial time series:
Basic functions such as scaling and sorting, subsetting,
mathematical operations and statistical functions.
Author: Diethelm Wuertz [aut] ,
Tobias Setz [aut],
Yohan Chalabi [aut],
Martin Maechler [ctb] ,
Georgi N. Boshnakov [cre, ctb]
Maintainer: Georgi N. Boshnakov <georgi.boshnakov@manchester.ac.uk>
Diff between timeSeries versions 4021.105 dated 2022-10-15 and 4030.106 dated 2023-05-25
DESCRIPTION | 7 +++---- MD5 | 36 +++++++++++++++++++----------------- NAMESPACE | 8 ++++---- NEWS.md | 9 ++++++--- build/vignette.rds |binary inst/_pkgdown.yml | 37 +++++++++++++++++++++++-------------- inst/doc/timeSeriesPlot.pdf |binary inst/pkgdown.yml |only man/00timeSeries-package.Rd | 5 +++-- man/base-apply.Rd | 2 +- man/base-start.Rd | 26 ++++++++++---------------- man/fin-dummy.Rd | 14 +++++--------- man/internals.Rd |only man/methods-comment.Rd | 3 +++ man/methods-plot.Rd | 4 ++++ man/statistics-colCumsums.Rd | 20 +++++++++----------- man/timeSeries-deprecated.Rd | 3 ++- man/timeSeries-isRegular.Rd | 8 +++++++- man/timeSeries-slotFinCenter.Rd | 1 + man/utils-description.Rd | 9 ++------- 20 files changed, 102 insertions(+), 90 deletions(-)
Title: Multistage Sampling Allocation and Sample Selection
Description: Multivariate optimal allocation for different domains in one and two stages stratified sample design. 'R2BEAT' extends the Neyman (1934) – Tschuprow (1923) allocation method to the case of several variables, adopting a generalization of the Bethel’s proposal (1989). 'R2BEAT' develops this methodology but, moreover, it allows to determine the sample allocation in the multivariate and multi-domains case of estimates for two-stage stratified samples. It also allows to perform both Primary Stage Units and Secondary Stage Units selection. This package requires the availability of 'ReGenesees', that can be installed from <https://github.com/DiegoZardetto/ReGenesees>.
Author: Andrea Fasulo,Giulio Barcaroli,Stefano Falorsi,Alessio Guandalini,Daniela Pagliuca,Marco Dionisio Terribili
Maintainer: Andrea Fasulo <fasulo@istat.it>
Diff between R2BEAT versions 1.0.4 dated 2021-12-02 and 1.0.5 dated 2023-05-25
R2BEAT-1.0.4/R2BEAT/R/eval_2stage.r |only R2BEAT-1.0.5/R2BEAT/DESCRIPTION | 14 R2BEAT-1.0.5/R2BEAT/MD5 | 39 R2BEAT-1.0.5/R2BEAT/NAMESPACE | 12 R2BEAT-1.0.5/R2BEAT/NEWS.md | 64 R2BEAT-1.0.5/R2BEAT/R/beth2.R | 289 - R2BEAT-1.0.5/R2BEAT/R/build_dummy_variables.R |only R2BEAT-1.0.5/R2BEAT/R/eval_2stage_2.R |only R2BEAT-1.0.5/R2BEAT/R/input_to_beat.2st_1.R | 36 R2BEAT-1.0.5/R2BEAT/R/input_to_beat.2st_2.R | 11 R2BEAT-1.0.5/R2BEAT/R/onAttach.R |only R2BEAT-1.0.5/R2BEAT/R/prepareInputToAllocation1.R | 163 R2BEAT-1.0.5/R2BEAT/R/select_PSU.R | 84 R2BEAT-1.0.5/R2BEAT/R/select_PSU2.R |only R2BEAT-1.0.5/R2BEAT/R/select_SSU.R | 115 R2BEAT-1.0.5/R2BEAT/R/sens_names.R |only R2BEAT-1.0.5/R2BEAT/inst/doc/R2BEAT_methodology.html | 1477 +++++++- R2BEAT-1.0.5/R2BEAT/inst/doc/R2BEAT_workflow.html | 2008 ++++++++--- R2BEAT-1.0.5/R2BEAT/inst/doc/R2BEAT_workflow_from_frame.html | 1880 ++++++++-- R2BEAT-1.0.5/R2BEAT/man/allocation.Rd | 1 R2BEAT-1.0.5/R2BEAT/man/build_dummy_variables.Rd |only R2BEAT-1.0.5/R2BEAT/man/eval_2stage.Rd | 9 R2BEAT-1.0.5/R2BEAT/man/select_PSU2.Rd |only R2BEAT-1.0.5/R2BEAT/man/select_SSU.Rd | 3 R2BEAT-1.0.5/R2BEAT/man/sens_names.Rd |only 25 files changed, 4968 insertions(+), 1237 deletions(-)
Title: Creating and Working with Pedigrees and Marker Data
Description: A comprehensive collection of tools for creating,
manipulating and visualising pedigrees and genetic marker data.
Pedigrees can be read from text files or created on the fly with
built-in functions. A range of utilities enable modifications like
adding or removing individuals, breaking loops, and merging pedigrees.
An online tool for creating pedigrees interactively, based on
'pedtools', is available at <https://magnusdv.shinyapps.io/quickped>.
'pedtools' is the hub of the 'ped suite', a collection of packages for
pedigree analysis. A detailed presentation of the 'ped suite' is given
in the book 'Pedigree Analysis in R' (Vigeland, 2021,
ISBN:9780128244302).
Author: Magnus Dehli Vigeland [aut, cre]
Maintainer: Magnus Dehli Vigeland <m.d.vigeland@medisin.uio.no>
Diff between pedtools versions 2.1.1 dated 2023-01-05 and 2.2.0 dated 2023-05-25
pedtools-2.1.1/pedtools/R/ped_accessors.R |only pedtools-2.1.1/pedtools/man/pedtools.Rd |only pedtools-2.2.0/pedtools/DESCRIPTION | 10 pedtools-2.2.0/pedtools/MD5 | 73 +-- pedtools-2.2.0/pedtools/NAMESPACE | 3 pedtools-2.2.0/pedtools/NEWS.md | 23 + pedtools-2.2.0/pedtools/R/marker.R | 55 ++ pedtools-2.2.0/pedtools/R/marker_allelematrix.R | 5 pedtools-2.2.0/pedtools/R/marker_attach.R | 34 - pedtools-2.2.0/pedtools/R/marker_database.R | 25 + pedtools-2.2.0/pedtools/R/ped.R | 41 + pedtools-2.2.0/pedtools/R/ped_labels.R |only pedtools-2.2.0/pedtools/R/ped_methods.R | 5 pedtools-2.2.0/pedtools/R/ped_modify.R | 9 pedtools-2.2.0/pedtools/R/ped_plot.R | 67 ++- pedtools-2.2.0/pedtools/R/ped_sex.R |only pedtools-2.2.0/pedtools/R/ped_utils.R | 95 +++- pedtools-2.2.0/pedtools/R/pedtools-package.R | 23 - pedtools-2.2.0/pedtools/R/plot_dag.R | 36 - pedtools-2.2.0/pedtools/R/plot_internal.R | 206 ++++++---- pedtools-2.2.0/pedtools/R/randomPed.R | 76 +++ pedtools-2.2.0/pedtools/R/setMutmod.R |only pedtools-2.2.0/pedtools/build/vignette.rds |binary pedtools-2.2.0/pedtools/inst/doc/pedtools.html | 6 pedtools-2.2.0/pedtools/man/famid.Rd | 2 pedtools-2.2.0/pedtools/man/freqDatabase.Rd | 10 pedtools-2.2.0/pedtools/man/getSex.Rd | 23 - pedtools-2.2.0/pedtools/man/internalplot.Rd | 45 +- pedtools-2.2.0/pedtools/man/marker.Rd | 23 - pedtools-2.2.0/pedtools/man/ped_modify.Rd | 6 pedtools-2.2.0/pedtools/man/ped_utils.Rd | 29 - pedtools-2.2.0/pedtools/man/pedtools-package.Rd |only pedtools-2.2.0/pedtools/man/plot.ped.Rd | 14 pedtools-2.2.0/pedtools/man/plotPedList.Rd | 42 -- pedtools-2.2.0/pedtools/man/randomPed.Rd | 30 + pedtools-2.2.0/pedtools/man/relabel.Rd | 2 pedtools-2.2.0/pedtools/man/setMutmod.Rd |only pedtools-2.2.0/pedtools/man/validatePed.Rd | 29 + pedtools-2.2.0/pedtools/tests/testthat/test-marker-attach.R | 12 pedtools-2.2.0/pedtools/tests/testthat/test-ped-modifications.R | 5 pedtools-2.2.0/pedtools/tests/testthat/test-ped-write.R | 12 41 files changed, 748 insertions(+), 328 deletions(-)
Title: Model-Free Functional Chi-Squared and Exact Tests
Description: Statistical hypothesis testing methods for
inferring model-free functional dependency using asymptotic
chi-squared or exact distributions. Functional test
statistics are asymmetric and functionally optimal, unique
from other related statistics. Tests in this package reveal
evidence for causality based on the causality-by-
functionality principle. They include asymptotic functional
chi-squared tests (Zhang & Song 2013) <arXiv:1311.2707>,
an adapted functional chi-squared test (Kumar & Song 2022)
<doi:10.1093/bioinformatics/btac206>,
and an exact functional test (Zhong & Song 2019)
<doi:10.1109/TCBB.2018.2809743> (Nguyen et al. 2020)
<doi:10.24963/ijcai.2020/372>. The normalized functional
chi-squared test was used by Best Performer 'NMSUSongLab'
in HPN-DREAM (DREAM8) Breast Cancer Network Inference
Challenges (Hill et al. 2016) <doi:10.1038/nmeth.3773>. A
function index (Zhong & Song 2019)
<doi:10.1186/s12920-019-0565-9> (Kumar et al. [...truncated...]
Author: Yang Zhang [aut],
Hua Zhong [aut] ,
Hien Nguyen [aut] ,
Ruby Sharma [aut] ,
Sajal Kumar [aut] ,
Yiyi Li [aut],
Joe Song [aut, cre]
Maintainer: Joe Song <joemsong@cs.nmsu.edu>
Diff between FunChisq versions 2.5.2 dated 2021-05-19 and 2.5.3 dated 2023-05-25
FunChisq-2.5.2/FunChisq/NEWS |only FunChisq-2.5.2/FunChisq/src/Makevars |only FunChisq-2.5.2/FunChisq/src/Makevars.win |only FunChisq-2.5.3/FunChisq/DESCRIPTION | 40 - FunChisq-2.5.3/FunChisq/MD5 | 40 - FunChisq-2.5.3/FunChisq/NEWS.md |only FunChisq-2.5.3/FunChisq/R/AdpFunChisq.R | 2 FunChisq-2.5.3/FunChisq/R/CondFunChisq.R | 39 - FunChisq-2.5.3/FunChisq/R/simulate_tables.R | 75 +- FunChisq-2.5.3/FunChisq/README.md | 16 FunChisq-2.5.3/FunChisq/build/partial.rdb |binary FunChisq-2.5.3/FunChisq/build/vignette.rds |binary FunChisq-2.5.3/FunChisq/inst/CITATION | 14 FunChisq-2.5.3/FunChisq/inst/REFERENCES.bib | 12 FunChisq-2.5.3/FunChisq/inst/doc/adapted.fun.chisq.test.html | 384 ++++++++--- FunChisq-2.5.3/FunChisq/inst/doc/exact.fun.test.html | 360 ++++++++-- FunChisq-2.5.3/FunChisq/inst/doc/fun.chisq.test.html | 263 +++++++ FunChisq-2.5.3/FunChisq/inst/doc/patterns.html | 351 ++++++++-- FunChisq-2.5.3/FunChisq/man/FunChisq-package.Rd | 6 FunChisq-2.5.3/FunChisq/man/fun.chisq.test.Rd | 2 FunChisq-2.5.3/FunChisq/man/simulate_tables.Rd | 8 FunChisq-2.5.3/FunChisq/src/RcppExports.cpp | 5 FunChisq-2.5.3/FunChisq/tests/testthat/test_simulate.R | 35 - 23 files changed, 1313 insertions(+), 339 deletions(-)
Title: Joint Clustering and Alignment of Functional Data
Description: Implementations of the k-means, hierarchical agglomerative and
DBSCAN clustering methods for functional data which allows for jointly
aligning and clustering curves. It supports functional data defined on
one-dimensional domains but possibly evaluating in multivariate codomains.
It supports functional data defined in arrays but also via the 'fd' and
'funData' classes for functional data defined in the 'fda' and 'funData'
packages respectively. It currently supports shift, dilation and affine
warping functions for functional data defined on the real line and uses the
SRSF framework to handle boundary-preserving warping for functional data
defined on a specific interval. Main reference for the k-means algorithm:
Sangalli L.M., Secchi P., Vantini S., Vitelli V. (2010) "k-mean alignment
for curve clustering" <doi:10.1016/j.csda.2009.12.008>. Main reference for
the SRSF framework: Tucker, J. D., Wu, W., & Srivastava, A. (2013)
"Generative models for functional data using phase and [...truncated...]
Author: Aymeric Stamm [aut, cre] ,
Laura Sangalli [ctb],
Piercesare Secchi [ctb],
Simone Vantini [ctb],
Valeria Vitelli [ctb],
Alessandro Zito [ctb]
Maintainer: Aymeric Stamm <aymeric.stamm@cnrs.fr>
Diff between fdacluster versions 0.2.1 dated 2023-05-19 and 0.2.2 dated 2023-05-25
DESCRIPTION | 13 ++++++------- MD5 | 18 +++++++++--------- NAMESPACE | 2 +- NEWS.md | 5 +++++ R/caps-class.R | 2 +- R/fdacluster-package.R | 14 +++++--------- R/fdakmeans.R | 44 +++++++++++++++++++++++--------------------- R/utils.R | 4 ++-- man/caps.Rd | 2 +- src/kmap.h | 5 +++++ 10 files changed, 58 insertions(+), 51 deletions(-)
Title: Bayesian Non- And Semi-Parametric Model Fitting
Description: MCMC algorithms & processing functions for: 1. single response multiple regression, see Papageorgiou, G. (2018) <doi: 10.32614/RJ-2018-069>, 2. multivariate response multiple regression, with nonparametric models for the means, the variances and the correlation matrix, with variable selection, see Papageorgiou, G. and Marshall, B. C. (2020) <doi: 10.1080/10618600.2020.1739534>, 3. joint mean-covariance models for multivariate responses, see Papageorgiou, G. (2022) <doi: 10.1002/sim.9376>, and 4.Dirichlet process mixtures, see Papageorgiou, G. (2019) <doi: 10.1111/anzs.12273>.
Author: Georgios Papageorgiou
Maintainer: Georgios Papageorgiou <gpapageo@gmail.com>
Diff between BNSP versions 2.2.2 dated 2023-03-26 and 2.2.3 dated 2023-05-25
BNSP-2.2.2/BNSP/R/bnpMulti.R |only BNSP-2.2.2/BNSP/R/test.R |only BNSP-2.2.3/BNSP/DESCRIPTION | 8 BNSP-2.2.3/BNSP/MD5 | 35 BNSP-2.2.3/BNSP/R/basics.R |only BNSP-2.2.3/BNSP/R/mvrm.R | 2022 ++++++++++++++++++++++++++++------ BNSP-2.2.3/BNSP/R/plot.R | 103 - BNSP-2.2.3/BNSP/man/BNSP-package.Rd | 4 BNSP-2.2.3/BNSP/man/mvrm.Rd | 5 BNSP-2.2.3/BNSP/man/predict.mvrm.Rd | 8 BNSP-2.2.3/BNSP/man/sinusoid.Rd | 12 BNSP-2.2.3/BNSP/src/BNSP_init.c | 4 BNSP-2.2.3/BNSP/src/LongMult.c | 6 BNSP-2.2.3/BNSP/src/MultGT.c | 4 BNSP-2.2.3/BNSP/src/MultGVT.c | 5 BNSP-2.2.3/BNSP/src/MultT.c | 15 BNSP-2.2.3/BNSP/src/Univariate.c | 361 ++++-- BNSP-2.2.3/BNSP/src/other.functions.h | 85 + BNSP-2.2.3/BNSP/src/sampling.h | 19 BNSP-2.2.3/BNSP/src/spec.BCM.h | 2 20 files changed, 2155 insertions(+), 543 deletions(-)
Title: A Collection of Utilities
Description: This is a new version of the 'userfriendlyscience' package,
which has grown a bit unwieldy. Therefore, distinct functionalities
are being 'consciously uncoupled' into different packages. This package
contains the general-purpose tools and utilities (see the
'behaviorchange' package, the 'rosetta' package, and the
soon-to-be-released 'scd' package for other functionality), and
is the most direct 'successor' of the original 'userfriendlyscience' package.
For example, this package contains a number of basic functions to create
higher level plots, such as diamond plots, to easily plot sampling
distributions, to generate confidence intervals, to plan study sample sizes
for confidence intervals, and to do some basic operations such as
(dis)attenuate effect size estimates.
Author: Gjalt-Jorn Peters [aut, cre] ,
Stefan Gruijters [ctb]
Maintainer: Gjalt-Jorn Peters <ufs@opens.science>
Diff between ufs versions 0.5.2 dated 2021-11-13 and 0.5.6 dated 2023-05-25
DESCRIPTION | 22 - MD5 | 233 +++++++++-------- NAMESPACE | 8 R/CIM.R | 13 R/diamondPlot.R | 2 R/getData.R | 8 R/ggSave.R | 39 ++ R/opts.R | 2 R/pCurve_from_d.R |only R/parallelSubscales.R |only R/scaleStructure.R | 68 +++-- R/suspectParticipants.R | 2 R/testRetestAlpha.R |only R/testRetestCES.R |only R/testRetestReliability.R |only build/partial.rdb |binary inst/CITATION | 14 - man/A_VarghaDelaney.Rd | 72 ++--- man/BAC_plot.Rd | 164 ++++++------ man/areColors.Rd | 60 ++-- man/arr.Rd | 98 +++---- man/associationMatrix.Rd | 334 ++++++++++++------------- man/associationMatrixHelperFunctions.Rd | 204 +++++++-------- man/associationsDiamondPlot.Rd | 314 +++++++++++------------ man/attenuate.d.Rd | 64 ++-- man/attenuate.r.Rd | 44 +-- man/basicDiamondplotFunctions.Rd | 368 +++++++++++++-------------- man/bfi-data.Rd | 44 +-- man/biAxisDiamondPlot.Rd | 294 +++++++++++----------- man/carelessObject.Rd | 86 +++--- man/carelessReport.Rd | 154 +++++------ man/cat0.Rd | 46 +-- man/checkDataIntegrity.Rd | 206 +++++++-------- man/checkPkgs.Rd | 108 ++++---- man/cohensDdistribution.Rd | 410 +++++++++++++++--------------- man/comparisonDiamondPlots.Rd | 426 ++++++++++++++++---------------- man/confIntOmegaSq.Rd | 116 ++++---- man/confIntProp.Rd | 112 ++++---- man/confIntR.Rd | 152 +++++------ man/confintdjmv.Rd | 50 +-- man/confintrjmv.Rd | 50 +-- man/convert.Rd | 240 +++++++++--------- man/convert.d.to.U3.Rd | 42 +-- man/convertToNumeric.Rd | 46 +-- man/cramersV.Rd | 128 ++++----- man/descriptives.Rd | 6 man/diamondPlot.Rd | 240 +++++++++--------- man/disattenuate.d.Rd | 66 ++-- man/disattenuate.r.Rd | 44 +-- man/escapeRegex.Rd | 110 ++++---- man/exceptionalScore.Rd | 124 ++++----- man/exceptionalScores.Rd | 126 ++++----- man/exportToHTML.Rd | 74 ++--- man/extractVarName.Rd | 64 ++-- man/fa_failsafe.Rd | 66 ++-- man/factorLoadingHeatmap.Rd | 214 ++++++++-------- man/findShortestInterval.Rd | 58 ++-- man/formatCI.Rd | 94 +++---- man/formatPvalue.Rd | 78 ++--- man/formatR.Rd | 50 +-- man/getData.Rd | 188 ++++++-------- man/ggBarChart.Rd | 70 ++--- man/ggBoxplot.Rd | 136 +++++----- man/ggEasyPlots.Rd | 214 ++++++++-------- man/ggPie.Rd | 60 ++-- man/ggProportionPlot.Rd | 390 ++++++++++++++--------------- man/ggSave.Rd | 109 ++++---- man/ggqq.Rd | 176 ++++++------- man/heading.Rd | 70 ++--- man/ifelseObj.Rd | 52 +-- man/invertingItems.Rd | 96 +++---- man/iqrOutlier.Rd | 70 ++--- man/irpplot.Rd | 100 +++---- man/is.nr.Rd | 48 +-- man/isTrue.Rd | 50 +-- man/itemScaleColours.Rd | 62 ++-- man/knitAndSave.Rd | 94 +++---- man/knitFig.Rd | 132 ++++----- man/makeScales.Rd | 62 ++-- man/massConvertToNumeric.Rd | 90 +++--- man/meanConfInt.Rd | 88 +++--- man/meanSDtoDiamondPlot.Rd | 236 ++++++++--------- man/meansDiamondPlot.Rd | 276 ++++++++++---------- man/meansDiamondPlotjmv.Rd | 54 ++-- man/multiResponse.Rd | 112 ++++---- man/multiResponsejmv.Rd | 60 ++-- man/multiVarFreq.Rd | 86 +++--- man/nncConversion.Rd | 180 ++++++------- man/noZero.Rd | 46 +-- man/normalHist.Rd | 204 +++++++-------- man/normalityAssessment.Rd | 414 +++++++++++++++---------------- man/omegasq.Rd | 148 +++++------ man/opts.Rd | 124 ++++----- man/parallelSubscales.Rd |only man/pwr.bootES.Rd | 122 ++++----- man/pwr.confIntProp.Rd | 70 ++--- man/pwr.confIntR.Rd | 128 ++++----- man/pwr.omegasq.Rd | 144 +++++----- man/qVec.Rd | 50 +-- man/quietRemotesInstall.Rd | 102 +++---- man/rbind_df_list.Rd | 40 +-- man/rbind_dfs.Rd | 48 +-- man/regrInfluential.Rd | 100 +++---- man/repeatStr.Rd | 54 ++-- man/report.Rd | 54 ++-- man/scaleStructure.Rd | 11 man/sharedSubString.Rd | 66 ++-- man/simDataSet.Rd | 288 ++++++++++----------- man/spearmanBrown.Rd | 68 ++--- man/strToFilename.Rd | 44 +-- man/suspectParticipants.Rd | 76 ++--- man/testRetestAlpha.Rd |only man/testRetestCES.Rd |only man/testRetestReliability.Rd |only man/testRetestSimData.Rd | 106 +++---- man/vecTxt.Rd | 124 ++++----- man/viridisPalette.Rd | 34 +- man/wrapVector.Rd | 70 ++--- man/zotero_construct_export_call.Rd | 80 +++--- man/zotero_download_and_export_items.Rd | 78 ++--- man/zotero_get_all_items.Rd | 44 +-- man/zotero_nr_of_items.Rd | 40 +-- 122 files changed, 6337 insertions(+), 6258 deletions(-)
Title: Executes 'SQL' Statements
Description: Runs 'SQL' statements on in-memory data frames within a temporary in-memory 'duckdb' data base.
Author: Jean-Luc Lipatz [aut, cre, cph]
Maintainer: Jean-Luc Lipatz <jllipatz@protonmail.com>
Diff between SQL versions 0.1.0 dated 2023-04-27 and 0.1.1 dated 2023-05-25
DESCRIPTION | 6 +++--- MD5 | 4 ++-- R/tables.R | 9 +++++++-- 3 files changed, 12 insertions(+), 7 deletions(-)
Title: The Online Regularized K-Means Clustering Algorithm
Description: Algorithm of online regularized k-means to deal with online multi(single) view data.
The philosophy of the package is described in Guo G. (2020)
<doi:10.1080/02331888.2020.1823979>.
Author: Guangbao Guo [aut, cre] ,
Miao Yu [aut],
Haoyue Song [aut],
Ruiling Niu [aut]
Maintainer: Guangbao Guo <ggb11111111@163.com>
Diff between ORKM versions 0.6.0.0 dated 2023-05-06 and 0.7.0.0 dated 2023-05-25
ORKM-0.6.0.0/ORKM/data/QCMX.rda |only ORKM-0.6.0.0/ORKM/data/seedX.rda |only ORKM-0.6.0.0/ORKM/man/QCMX.Rd |only ORKM-0.6.0.0/ORKM/man/seedX.Rd |only ORKM-0.7.0.0/ORKM/DESCRIPTION | 8 +- ORKM-0.7.0.0/ORKM/MD5 | 68 +++++++++++++++++++------ ORKM-0.7.0.0/ORKM/NAMESPACE | 2 ORKM-0.7.0.0/ORKM/data/QCM.rda |only ORKM-0.7.0.0/ORKM/data/Washington_cites.rda |only ORKM-0.7.0.0/ORKM/data/Washington_content.rda |only ORKM-0.7.0.0/ORKM/data/Washington_inbound.rda |only ORKM-0.7.0.0/ORKM/data/Washington_outbound.rda |only ORKM-0.7.0.0/ORKM/data/Wisconsin_cites.rda |only ORKM-0.7.0.0/ORKM/data/Wisconsin_content.rda |only ORKM-0.7.0.0/ORKM/data/Wisconsin_inbound.rda |only ORKM-0.7.0.0/ORKM/data/Wisconsin_outbound.rda |only ORKM-0.7.0.0/ORKM/data/cornell_cites.rda |only ORKM-0.7.0.0/ORKM/data/cornell_content.rda |only ORKM-0.7.0.0/ORKM/data/cornell_inbound.rda |only ORKM-0.7.0.0/ORKM/data/cornell_outbound.rda |only ORKM-0.7.0.0/ORKM/data/labelTexas.rda |only ORKM-0.7.0.0/ORKM/data/labelWashington.rda |only ORKM-0.7.0.0/ORKM/data/labelWisconsin.rda |only ORKM-0.7.0.0/ORKM/data/labelcornell.rda |only ORKM-0.7.0.0/ORKM/data/seed.rda |only ORKM-0.7.0.0/ORKM/data/texas_cites.rda |only ORKM-0.7.0.0/ORKM/data/texas_content.rda |only ORKM-0.7.0.0/ORKM/data/texas_inbound.rda |only ORKM-0.7.0.0/ORKM/data/texas_outbound.rda |only ORKM-0.7.0.0/ORKM/man/QCM.Rd |only ORKM-0.7.0.0/ORKM/man/Washington_cites.Rd |only ORKM-0.7.0.0/ORKM/man/Washington_content.Rd |only ORKM-0.7.0.0/ORKM/man/Washington_inbound.Rd |only ORKM-0.7.0.0/ORKM/man/Washington_outbound.Rd |only ORKM-0.7.0.0/ORKM/man/Wisconsin_cites.Rd |only ORKM-0.7.0.0/ORKM/man/Wisconsin_content.Rd |only ORKM-0.7.0.0/ORKM/man/Wisconsin_inbound.Rd |only ORKM-0.7.0.0/ORKM/man/Wisconsin_outbound.Rd |only ORKM-0.7.0.0/ORKM/man/cora_view1.Rd | 4 - ORKM-0.7.0.0/ORKM/man/cora_view2.Rd | 6 +- ORKM-0.7.0.0/ORKM/man/cora_view3.Rd | 6 +- ORKM-0.7.0.0/ORKM/man/cora_view4.Rd | 6 +- ORKM-0.7.0.0/ORKM/man/cornell_cites.Rd |only ORKM-0.7.0.0/ORKM/man/cornell_content.Rd |only ORKM-0.7.0.0/ORKM/man/cornell_inbound.Rd |only ORKM-0.7.0.0/ORKM/man/cornell_outbound.Rd |only ORKM-0.7.0.0/ORKM/man/labelTexas.Rd |only ORKM-0.7.0.0/ORKM/man/labelWashington.Rd |only ORKM-0.7.0.0/ORKM/man/labelWisconsin.Rd |only ORKM-0.7.0.0/ORKM/man/labelcornell.Rd |only ORKM-0.7.0.0/ORKM/man/movie_1.Rd | 4 - ORKM-0.7.0.0/ORKM/man/movie_2.Rd | 4 - ORKM-0.7.0.0/ORKM/man/seed.Rd |only ORKM-0.7.0.0/ORKM/man/sobar.Rd | 4 - ORKM-0.7.0.0/ORKM/man/texas_cites.Rd |only ORKM-0.7.0.0/ORKM/man/texas_content.Rd |only ORKM-0.7.0.0/ORKM/man/texas_inbound.Rd |only ORKM-0.7.0.0/ORKM/man/texas_outbound.Rd |only ORKM-0.7.0.0/ORKM/man/turelabel.Rd | 2 59 files changed, 77 insertions(+), 37 deletions(-)
Title: A General-Purpose Package for Dynamic Report Generation in R
Description: Provides a general-purpose tool for dynamic report generation in R
using Literate Programming techniques.
Author: Yihui Xie [aut, cre] ,
Abhraneel Sarma [ctb],
Adam Vogt [ctb],
Alastair Andrew [ctb],
Alex Zvoleff [ctb],
Amar Al-Zubaidi [ctb],
Andre Simon [ctb] ,
Aron Atkins [ctb],
Aaron Wolen [ctb],
Ashley Manton [ctb],
Atsushi Yasumoto [ctb] ,
Ben Baumer [ctb], [...truncated...]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between knitr versions 1.42 dated 2023-01-25 and 1.43 dated 2023-05-25
DESCRIPTION | 29 +++-- MD5 | 60 +++++------ R/block.R | 24 ++-- R/cache.R | 2 R/citation.R | 1 R/engine.R | 12 +- R/hooks-md.R | 1 R/output.R | 69 ++++++++++--- R/parser.R | 5 R/plot.R | 6 - R/table.R | 16 +-- R/utils-rd2html.R | 2 R/utils-upload.R | 40 ++++--- R/utils.R | 88 ++++++++++++----- build/vignette.rds |binary inst/CITATION | 18 +-- inst/doc/datatables.html | 162 +++++++++++++++++++------------ inst/doc/docco-classic.html | 88 +++++++++++++++-- inst/doc/docco-linear.html | 20 +-- inst/doc/knit_expand.html | 166 ++++++++++++++++++++------------ inst/doc/knit_print.html | 210 ++++++++++++++++++++--------------------- inst/doc/knitr-intro.html | 24 ++-- inst/doc/knitr-markdown.html | 172 ++++++++++++++++++++------------- inst/doc/knitr-refcard.pdf |binary inst/misc/gWidgetsWWW2-knitr.R | 2 inst/opencpu/apps/index.html | 2 inst/shiny/server.R | 2 man/imgur_upload.Rd | 17 ++- man/kable.Rd | 10 - tests/testit/test-hooks-md.R | 4 tests/testit/test-utils.R | 14 +- 31 files changed, 773 insertions(+), 493 deletions(-)
Title: Evaluating the Quality of Natural Forest
Description: Including tree height classification, tree height model establishment, sectional area growth and stock growth modeling, and calculation of actual and potential forest productivity.
Author: Liyong Fu [aut],
Shirong Liu [aut],
Shouzheng Tang [aut],
Guangshuang Duan [aut],
Zhong Wang [aut],
Linyan Feng [aut],
Dongbo Xie [aut],
Yuanyuan Han [aut, cre]
Maintainer: Yuanyuan Han <jackhanyuan@foxmail.com>
Diff between forestat versions 1.0.0 dated 2023-05-22 and 1.0.1 dated 2023-05-25
DESCRIPTION | 21 +++++++++++++++++---- MD5 | 10 +++++----- NEWS.md | 9 ++++++++- inst/doc/vignette.Rmd | 15 ++++----------- inst/doc/vignette.html | 41 +++++++++++++++++------------------------ vignettes/vignette.Rmd | 15 ++++----------- 6 files changed, 55 insertions(+), 56 deletions(-)
Title: R Bindings to the Calendaring Functionality of 'QuantLib'
Description: 'QuantLib' bindings are provided for R using 'Rcpp' via an evolved version
of the initial header-only 'Quantuccia' project offering an subset of 'QuantLib' (now
maintained separately just for the calendaring subset). See the included file 'AUTHORS'
for a full list of contributors to 'QuantLib' (and hence also 'Quantuccia').
Author: Dirk Eddelbuettel; the authors and contributors of QuantLib
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between qlcal versions 0.0.5 dated 2023-04-20 and 0.0.6 dated 2023-05-25
qlcal-0.0.5/qlcal/src/ql/time/asx.hpp |only qlcal-0.0.5/qlcal/src/ql/time/ecb.hpp |only qlcal-0.0.5/qlcal/src/ql/time/imm.hpp |only qlcal-0.0.6/qlcal/ChangeLog | 52 +++ qlcal-0.0.6/qlcal/DESCRIPTION | 8 qlcal-0.0.6/qlcal/MD5 | 63 ++-- qlcal-0.0.6/qlcal/build/partial.rdb |binary qlcal-0.0.6/qlcal/demo/allUScalendars.R | 2 qlcal-0.0.6/qlcal/inst/NEWS.Rd | 10 qlcal-0.0.6/qlcal/src/Makevars | 1 qlcal-0.0.6/qlcal/src/Makevars.win | 1 qlcal-0.0.6/qlcal/src/ql/errors.cpp | 2 qlcal-0.0.6/qlcal/src/ql/errors.hpp | 18 - qlcal-0.0.6/qlcal/src/ql/optional.cpp |only qlcal-0.0.6/qlcal/src/ql/optional.hpp |only qlcal-0.0.6/qlcal/src/ql/patterns/observable.cpp | 12 qlcal-0.0.6/qlcal/src/ql/patterns/observable.hpp | 229 ++++++++-------- qlcal-0.0.6/qlcal/src/ql/patterns/singleton.hpp | 168 +++-------- qlcal-0.0.6/qlcal/src/ql/settings.hpp | 17 - qlcal-0.0.6/qlcal/src/ql/time/all.hpp | 6 qlcal-0.0.6/qlcal/src/ql/time/calendars/hongkong.cpp | 52 +++ qlcal-0.0.6/qlcal/src/ql/time/calendars/india.cpp | 127 ++++++++ qlcal-0.0.6/qlcal/src/ql/time/calendars/india.hpp | 2 qlcal-0.0.6/qlcal/src/ql/time/calendars/singapore.cpp | 88 ++++++ qlcal-0.0.6/qlcal/src/ql/time/calendars/southafrica.cpp | 2 qlcal-0.0.6/qlcal/src/ql/time/calendars/southkorea.cpp | 3 qlcal-0.0.6/qlcal/src/ql/time/date.cpp | 37 +- qlcal-0.0.6/qlcal/src/ql/time/date.hpp | 30 +- qlcal-0.0.6/qlcal/src/ql/time/period.cpp | 68 +--- qlcal-0.0.6/qlcal/src/ql/time/period.hpp | 8 qlcal-0.0.6/qlcal/src/ql/utilities/dataformatters.hpp | 2 qlcal-0.0.6/qlcal/src/ql/utilities/dataparsers.cpp | 7 qlcal-0.0.6/qlcal/src/ql/utilities/dataparsers.hpp | 12 qlcal-0.0.6/qlcal/src/ql/utilities/null.hpp | 47 +-- qlcal-0.0.6/qlcal/src/ql/utilities/observablevalue.hpp | 16 + 35 files changed, 697 insertions(+), 393 deletions(-)
Title: Fits Multivariate Spatio-Temporal Occupancy Model
Description: Spatio-temporal multivariate occupancy models can handle multiple species in occupancy models. This method for fitting such models is described in Hepler and Erhardt (2021) "A spatiotemporal model for multivariate occupancy data" <https://onlinelibrary.wiley.com/doi/abs/10.1002/env.2657>.
Author: Staci Hepler [aut, cre],
Rob Erhardt [aut]
Maintainer: Staci Hepler <heplersa@wfu.edu>
Diff between multiocc versions 0.1.0 dated 2022-07-15 and 0.2.0 dated 2023-05-25
multiocc-0.1.0/multiocc/R/create.data.R |only multiocc-0.1.0/multiocc/R/data.R |only multiocc-0.1.0/multiocc/R/make.basis.R |only multiocc-0.1.0/multiocc/R/run.mcmc.R |only multiocc-0.1.0/multiocc/data/Example.rda |only multiocc-0.1.0/multiocc/man/create.data.Rd |only multiocc-0.1.0/multiocc/man/make.basis.Rd |only multiocc-0.1.0/multiocc/man/run.mcmc.Rd |only multiocc-0.2.0/multiocc/DESCRIPTION | 17 +++++---- multiocc-0.2.0/multiocc/MD5 | 43 +++++++++++++++--------- multiocc-0.2.0/multiocc/NAMESPACE | 22 ++++++++---- multiocc-0.2.0/multiocc/R/GibbsSampler.R |only multiocc-0.2.0/multiocc/R/MakeBasis.R |only multiocc-0.2.0/multiocc/R/coords.R | 2 - multiocc-0.2.0/multiocc/R/detection.R | 2 - multiocc-0.2.0/multiocc/R/multiocc-package.R |only multiocc-0.2.0/multiocc/R/multioccbuild.R |only multiocc-0.2.0/multiocc/R/occupancy.R | 2 - multiocc-0.2.0/multiocc/build |only multiocc-0.2.0/multiocc/data/coords.rda |only multiocc-0.2.0/multiocc/data/detection.rda |only multiocc-0.2.0/multiocc/data/occupancy.rda |only multiocc-0.2.0/multiocc/inst |only multiocc-0.2.0/multiocc/man/GibbsSampler.Rd |only multiocc-0.2.0/multiocc/man/MakeBasis.Rd |only multiocc-0.2.0/multiocc/man/coords.Rd | 2 - multiocc-0.2.0/multiocc/man/detection.Rd | 2 - multiocc-0.2.0/multiocc/man/multiocc-package.Rd |only multiocc-0.2.0/multiocc/man/multioccbuild.Rd |only multiocc-0.2.0/multiocc/man/occupancy.Rd | 4 +- multiocc-0.2.0/multiocc/tests |only multiocc-0.2.0/multiocc/vignettes |only 32 files changed, 60 insertions(+), 36 deletions(-)
Title: Logistic Knowledge Tracing
Description: Computes Logistic Knowledge Tracing ('LKT') which is a general method for tracking human learning in an educational software system. Please see Pavlik, Eglington, and Harrel-Williams (2021) <https://ieeexplore.ieee.org/document/9616435>. 'LKT' is a method to compute features of student data that are used as predictors of subsequent performance. 'LKT' allows great flexibility in the choice of predictive components and features computed for these predictive components. The system is built on top of 'LiblineaR', which enables extremely fast solutions compared to base glm() in R.
Author: Philip I. Pavlik Jr. [aut, ctb, cre]
,
Luke G. Eglington [aut, ctb]
Maintainer: Philip I. Pavlik Jr. <imrryr@gmail.com>
Diff between LKT versions 1.3.0 dated 2022-10-10 and 1.5.0 dated 2023-05-25
LKT-1.3.0/LKT/man/countOutcome.Rd |only LKT-1.3.0/LKT/vignettes/vigfig-unnamed-chunk-18-1.png |only LKT-1.3.0/LKT/vignettes/vigfig-unnamed-chunk-18-2.png |only LKT-1.3.0/LKT/vignettes/vigfig-unnamed-chunk-18-3.png |only LKT-1.3.0/LKT/vignettes/vigfig-unnamed-chunk-18-4.png |only LKT-1.5.0/LKT/DESCRIPTION | 15 LKT-1.5.0/LKT/MD5 | 55 LKT-1.5.0/LKT/NAMESPACE | 13 LKT-1.5.0/LKT/NEWS.md | 6 LKT-1.5.0/LKT/R/LKTfunctions.R | 1135 ++-- LKT-1.5.0/LKT/R/data.R | 4 LKT-1.5.0/LKT/build/vignette.rds |binary LKT-1.5.0/LKT/data/largerawsample.rda |binary LKT-1.5.0/LKT/inst/doc/Basic_Operations.html | 18 LKT-1.5.0/LKT/inst/doc/Examples.Rmd | 4341 +++++++++++---- LKT-1.5.0/LKT/inst/doc/Examples.html | 4888 ++++++++++++------ LKT-1.5.0/LKT/man/LASSOLKTData.Rd |only LKT-1.5.0/LKT/man/LASSOLKTModel.Rd |only LKT-1.5.0/LKT/man/LKT.Rd | 89 LKT-1.5.0/LKT/man/LKT_HDI.Rd | 4 LKT-1.5.0/LKT/man/buildLKTModel.Rd |only LKT-1.5.0/LKT/man/countOutcomeold.Rd |only LKT-1.5.0/LKT/man/largerawsample.Rd | 2 LKT-1.5.0/LKT/man/samplelkt.Rd | 2 LKT-1.5.0/LKT/vignettes/Examples.Rmd | 4341 +++++++++++---- LKT-1.5.0/LKT/vignettes/Examples.Rmd.orig | 277 - LKT-1.5.0/LKT/vignettes/precompile.R |only LKT-1.5.0/LKT/vignettes/vigfig-unnamed-chunk-14-1.png |binary LKT-1.5.0/LKT/vignettes/vigfig-unnamed-chunk-14-2.png |binary LKT-1.5.0/LKT/vignettes/vigfig-unnamed-chunk-14-3.png |binary LKT-1.5.0/LKT/vignettes/vigfig-unnamed-chunk-20-1.png |only LKT-1.5.0/LKT/vignettes/vigfig-unnamed-chunk-22-1.png |only LKT-1.5.0/LKT/vignettes/vigfig-unnamed-chunk-23-1.png |only LKT-1.5.0/LKT/vignettes/vigfig-unnamed-chunk-24-1.png |only LKT-1.5.0/LKT/vignettes/vigfig-unnamed-chunk-25-1.png |only LKT-1.5.0/LKT/vignettes/vigfig-unnamed-chunk-26-1.png |only LKT-1.5.0/LKT/vignettes/vigfig-unnamed-chunk-27-1.png |only 37 files changed, 10634 insertions(+), 4556 deletions(-)
Title: Multivariate and Functional Spatial Scan Statistics
Description: Allows to detect spatial clusters of abnormal values on multivariate or functional data. Martin KULLDORFF and Lan HUANG and Kevin KONTY (2009) <doi:10.1186/1476-072X-8-58>, Inkyung JUNG and Ho Jin CHO (2015) <doi:10.1186/s12942-015-0024-6>, Lionel CUCALA and Michael GENIN and Caroline LANIER and Florent OCCELLI (2017) <doi:10.1016/j.spasta.2017.06.001>, Lionel CUCALA and Michael GENIN and Florent OCCELLI and Julien SOULA (2019) <doi:10.1016/j.spasta.2018.10.002>, Camille FREVENT and Mohamed-Salem AHMED and Matthieu MARBAC and Michael GENIN (2021) <doi:10.1016/j.spasta.2021.100550>, Zaineb SMIDA and Lionel CUCALA and Ali GANNOUN and Ghislain Durif (2022) <doi:10.1016/j.csda.2021.107378>, Camille FREVENT and Mohamed-Salem AHMED and Sophie DABO-NIANG and Michael GENIN (2023) <doi:10.1093/jrsssc/qlad017>.
Author: Camille FREVENT [aut, cre, cph],
Mohamed-Salem AHMED [aut],
Julien SOULA [aut],
Zaineb SMIDA [aut],
Lionel CUCALA [aut],
Sophie DABO-NIANG [aut],
Michael GENIN [aut]
Maintainer: Camille FREVENT <camille.frevent@univ-lille.fr>
Diff between HDSpatialScan versions 1.0.3 dated 2022-08-05 and 1.0.4 dated 2023-05-25
DESCRIPTION | 10 +++++----- MD5 | 24 ++++++++++++------------ NAMESPACE | 2 +- R/documentation_page.R | 12 ++++++------ R/plot_map.R | 4 ++-- R/scan_fonc.R | 12 ++++++------ man/DFFSS.Rd | 2 +- man/HDSpatialScan-package.Rd | 10 +++++----- man/MDFFSS.Rd | 2 +- man/MPFSS.Rd | 2 +- man/MRBFSS.Rd | 2 +- man/NPFSS.Rd | 2 +- man/PFSS.Rd | 2 +- 13 files changed, 43 insertions(+), 43 deletions(-)
Title: Multiple Fill and Colour Scales in 'ggplot2'
Description: Use multiple fill and colour scales in 'ggplot2'.
Author: Elio Campitelli [cre, aut]
Maintainer: Elio Campitelli <elio.campitelli@cima.fcen.uba.ar>
Diff between ggnewscale versions 0.4.8 dated 2022-10-06 and 0.4.9 dated 2023-05-25
DESCRIPTION | 9 MD5 | 19 - NEWS.md | 6 R/new-scale.R | 12 README.md | 242 ++++++++++++++++---- man/figures/README-unnamed-chunk-3-1.png |binary man/ggnewscale-package.Rd | 8 tests/testthat/Rplots.pdf |binary tests/testthat/_snaps/newscale/implicit-mapping.svg |only tests/testthat/_snaps/newscale/many-layers.svg | 18 - tests/testthat/test-newscale.R | 38 ++- 11 files changed, 279 insertions(+), 73 deletions(-)
Title: Generalized Autoregressive Score Models
Description: Estimation, forecasting, and simulation of generalized
autoregressive score (GAS) models of Creal, Koopman, and Lucas (2013)
<doi:10.1002/jae.1279> and Harvey (2013) <doi:10.1017/cbo9781139540933>.
Model specification allows for various conditional distributions, different
parametrizations, exogenous variables, joint and separate modeling of
exogenous variables and dynamics,higher score and autoregressive orders,
custom and unconditional initial values of time-varying parameters, fixed
and bounded values of coefficients, and missing values. Model estimation is
performed by the maximum likelihood method and the Hessian matrix.
Author: Vladimir Holy [aut, cre]
Maintainer: Vladimir Holy <vladimir.holy@vse.cz>
Diff between gasmodel versions 0.2.0 dated 2023-01-06 and 0.3.0 dated 2023-05-25
DESCRIPTION | 13 MD5 | 129 ++++---- NEWS.md | 13 R/data.R | 26 + R/distr_beta_conc.R |only R/distr_beta_meansize.R |only R/distr_beta_meanvar.R |only R/distr_dirichlet_conc.R |only R/distr_exp_rate.R | 6 R/distr_exp_scale.R | 6 R/distr_gamma_rate.R | 6 R/distr_gamma_scale.R | 6 R/distr_gengamma_rate.R | 2 R/distr_gengamma_scale.R | 4 R/distr_geom_mean.R | 6 R/distr_geom_prob.R | 6 R/distr_laplace_meanscale.R |only R/distr_mvnorm_meanvar.R | 6 R/distr_mvt_meanvar.R | 6 R/distr_negbin_nb2.R | 6 R/distr_negbin_prob.R | 6 R/distr_norm_meanvar.R | 6 R/distr_pluce_worth.R | 390 +++++++++++++------------- R/distr_pois_mean.R | 6 R/distr_skellam_diff.R | 6 R/distr_skellam_meandisp.R | 6 R/distr_skellam_meanvar.R | 6 R/distr_t_meanvar.R | 6 R/distr_vonmises_meanconc.R |only R/distr_weibull_rate.R | 6 R/distr_weibull_scale.R | 6 R/distr_zigeom_mean.R | 8 R/distr_zinegbin_nb2.R | 8 R/distr_zipois_mean.R | 8 R/distr_ziskellam_diff.R | 8 R/distr_ziskellam_meandisp.R | 8 R/distr_ziskellam_meanvar.R | 8 R/helper_check.R | 14 R/helper_likelihood.R | 2 R/helper_matrix.R | 18 - R/helper_setup.R | 32 +- R/helper_silent.R |only R/main_bootstrap.R | 2 R/main_estimate.R | 12 R/main_filter.R | 4 R/main_forecast.R | 2 R/main_simulate.R | 2 R/main_wrappers.R | 6 R/sysdata.rda |binary README.md | 184 ++++++------ build/partial.rdb |binary data/german_car_market_cap.rda |only inst/doc/case_durations.Rmd | 4 inst/doc/case_durations.html | 19 - inst/doc/case_rankings.Rmd | 3 inst/doc/case_rankings.html | 18 - inst/doc/distributions.Rmd | 284 ++++++++++++++++++- inst/doc/distributions.html | 549 +++++++++++++++++++++++++++++++------- man/gas.Rd | 6 man/gas_bootstrap.Rd | 2 man/gas_filter.Rd | 2 man/gas_forecast.Rd | 2 man/gas_simulate.Rd | 2 man/german_car_market_cap.Rd |only man/ice_hockey_championships.Rd | 4 vignettes/case_durations.Rmd | 4 vignettes/case_durations.Rmd.orig | 4 vignettes/case_rankings.Rmd | 3 vignettes/case_rankings.Rmd.orig | 3 vignettes/distributions.Rmd | 284 ++++++++++++++++++- 70 files changed, 1601 insertions(+), 603 deletions(-)
Title: ASCII Formatting for Values and Tables
Description: We provide a framework for rendering complex tables to ASCII,
and a set of formatters for transforming values or sets of values into
ASCII-ready display strings.
Author: Gabriel Becker [aut, cre],
Adrian Waddell [aut],
Davide Garolini [ctb],
F. Hoffmann-La Roche AG [cph, fnd]
Maintainer: Gabriel Becker <gabembecker@gmail.com>
Diff between formatters versions 0.4.1 dated 2023-04-14 and 0.5.0 dated 2023-05-25
DESCRIPTION | 8 MD5 | 49 +- NAMESPACE | 20 NEWS.md | 19 R/generics.R | 55 ++ R/matrix_form.R | 630 ++++++++++++++++++++++++++--- R/mpf_exporters.R | 216 ++++++++++ R/page_size.R | 53 +- R/pagination.R | 826 +++++++++++++++++++++++++++++++++++---- R/tostring.R | 476 +++++++++++----------- README.md | 6 inst/WORDLIST | 8 inst/doc/formatters.html | 4 man/MatrixPrintForm.Rd | 13 man/MatrixPrintForm_class.Rd |only man/do_forced_paginate.Rd |only man/export_as_rtf.Rd |only man/export_as_txt.Rd |only man/font_lcpi.Rd | 2 man/mpf_accessors.Rd | 29 + man/mpf_to_rtf.Rd | 4 man/num_rep_cols.Rd |only man/page_lcpp.Rd | 6 man/paginate_indices.Rd |only man/ref_df_row.Rd |only man/tostring.Rd | 2 tests/testthat/test-exporters.R | 112 +++++ tests/testthat/test-formatters.R | 2 tests/testthat/test-pagination.R | 207 +++++++-- 29 files changed, 2238 insertions(+), 509 deletions(-)
Title: Load and Analyze Live Data from the COVID-19 Pandemic
Description: Load and analyze updated time series worldwide data of reported cases for the Novel Coronavirus Disease (COVID-19) from different sources, including the Johns Hopkins University Center for Systems Science and Engineering (JHU CSSE) data repository <https://github.com/CSSEGISandData/COVID-19>, "Our World in Data" <https://github.com/owid/> among several others. The datasets reporting the COVID-19 cases are available in two main modalities, as a time series sequences and aggregated data for the last day with greater spatial resolution. Several analysis, visualization and modelling functions are available in the package that will allow the user to compute and visualize total number of cases, total number of changes and growth rate globally or for an specific geographical location, while at the same time generating models using these trends; generate interactive visualizations and generate Susceptible-Infected-Recovered (SIR) model for the disease spread.
Author: Marcelo Ponce [aut, cre], Amit Sandhel [ctb]
Maintainer: Marcelo Ponce <m.ponce@utoronto.ca>
Diff between covid19.analytics versions 2.1.3 dated 2022-08-18 and 2.1.3.1 dated 2023-05-25
DESCRIPTION | 8 ++-- MD5 | 18 +++++----- NEWS | 4 +- R/covid19_print.R | 3 + README.md | 30 ++++++++++++---- inst/CITATION | 6 +-- inst/doc/covid19.analytics.html | 71 +++++++++++++++++++++------------------- man/print.Rd |only man/print.report.Rd | 11 +----- vignettes/man/print.Rd |only vignettes/man/print.report.Rd | 11 +----- 11 files changed, 88 insertions(+), 74 deletions(-)
More information about covid19.analytics at CRAN
Permanent link
Title: Mining Frequent Sequences
Description: Add-on for arules to handle and mine frequent sequences.
Provides interfaces to the C++ implementation of cSPADE by
Mohammed J. Zaki.
Author: Christian Buchta and Michael Hahsler, with contributions from
Daniel Diaz
Maintainer: Christian Buchta <christian.buchta@wu.ac.at>
Diff between arulesSequences versions 0.2-29 dated 2023-05-18 and 0.2-30 dated 2023-05-25
CHANGELOG | 6 ++++++ DESCRIPTION | 6 +++--- MD5 | 21 ++++++++++++--------- R/04parameter.R | 3 +++ R/05read_write.R | 20 +++++++++++++------- man/SPcontrol-class.Rd | 2 ++ man/cspade.Rd | 7 +++++-- src/TPOSE/getconf.cc | 4 ++++ src/ptree.c | 6 +++--- tests/ptree.Rout.save | 4 ++-- tests/timeout.R |only tests/timeout.Rout.save |only tests/timeout.Rout.windows |only 13 files changed, 53 insertions(+), 26 deletions(-)
More information about arulesSequences at CRAN
Permanent link
Title: WHOIS Server Querying
Description: Queries data from WHOIS servers.
Author: Brad Cable
Maintainer: Brad Cable <brad@bcable.net>
Diff between Rwhois versions 1.0.12 dated 2022-07-13 and 1.0.14 dated 2023-05-24
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/functions.R | 4 +++- README.md | 9 +++------ man/Rwhois.Rd | 7 ++----- 5 files changed, 16 insertions(+), 20 deletions(-)
Title: Empirical Bayesian Lasso and Elastic Net Methods for Generalized
Linear Models
Description: Provides empirical Bayesian lasso and elastic net algorithms for variable selection and effect estimation. Key features include sparse variable selection and effect estimation via generalized linear regression models, high dimensionality with p>>n, and significance test for nonzero effects. This package outperforms other popular methods such as lasso and elastic net methods in terms of power of detection, false discovery rate, and power of detecting grouping effects. Please reference its use as A Huang and D Liu (2016) <doi: 10.1093/bioinformatics/btw143>.
Author: Anhui Huang, Dianting Liu
Maintainer: Anhui Huang <anhuihuang@gmail.com>
Diff between EBglmnet versions 5.3 dated 2023-05-13 and 6.0 dated 2023-05-24
DESCRIPTION | 6 +++--- MD5 | 18 +++++++++--------- R/CVonePair.R | 2 +- inst/doc/EBglmnet_intro.Rmd | 8 ++++---- man/EBglmnet-package.Rd | 9 +++++++-- man/EBglmnet.Rd | 14 +++++++++----- src/elasticNetLinear.c | 6 +++--- src/fEBBinaryNEG.c | 2 +- src/fEBLinearNEG.c | 2 +- vignettes/EBglmnet_intro.Rmd | 8 ++++---- 10 files changed, 42 insertions(+), 33 deletions(-)
Title: Interactive Tutorials for R
Description: Create interactive tutorials using R Markdown. Use a
combination of narrative, figures, videos, exercises, and quizzes to
create self-paced tutorials for learning about R and R packages.
Author: Garrick Aden-Buie [aut, cre] ,
Barret Schloerke [aut] ,
JJ Allaire [aut, ccp],
Alexander Rossell Hayes [aut] ,
Nischal Shrestha [ctb] ,
Angela Li [ctb] ,
Posit, PBC [cph, fnd],
Ajax.org B.V. [ctb, cph] ,
Zeno Rocha [ctb, cph] ,
Nick Payne [ctb, cph] [...truncated...]
Maintainer: Garrick Aden-Buie <garrick@posit.co>
Diff between learnr versions 0.11.3 dated 2023-03-15 and 0.11.4 dated 2023-05-24
learnr-0.11.3/learnr/tests/testthat/tutorials/hint-copy/hint-copy.html |only learnr-0.11.3/learnr/tests/testthat/tutorials/hint-div/hint-div.html |only learnr-0.11.3/learnr/tests/testthat/tutorials/hint-next/hint-next.html |only learnr-0.11.4/learnr/DESCRIPTION | 22 ++-- learnr-0.11.4/learnr/MD5 | 39 +++---- learnr-0.11.4/learnr/NAMESPACE | 1 learnr-0.11.4/learnr/NEWS.md | 6 + learnr-0.11.4/learnr/R/evaluators.R | 5 learnr-0.11.4/learnr/R/question_checkbox.R | 3 learnr-0.11.4/learnr/R/question_numeric.R | 2 learnr-0.11.4/learnr/R/question_radio.R | 2 learnr-0.11.4/learnr/R/question_text.R | 2 learnr-0.11.4/learnr/R/quiz.R | 19 ++- learnr-0.11.4/learnr/build/vignette.rds |binary learnr-0.11.4/learnr/inst/tutorials/ex-data-mutate/ex-data-mutate.Rmd | 2 learnr-0.11.4/learnr/man/question_checkbox.Rd | 5 learnr-0.11.4/learnr/man/quiz.Rd | 10 + learnr-0.11.4/learnr/tests/testthat/test-evaluators.R | 53 ++++------ learnr-0.11.4/learnr/tests/testthat/test-exercise.R | 16 +-- learnr-0.11.4/learnr/tests/testthat/test-question_checkbox.R | 31 +++++ learnr-0.11.4/learnr/tests/testthat/test-question_numeric.R | 10 - learnr-0.11.4/learnr/tests/testthat/test-quiz.R | 39 +++++++ 22 files changed, 179 insertions(+), 88 deletions(-)
Title: Explore the Innards of 'ggplot2' Objects
Description: Extensions to 'ggplot2' providing low-level debug tools: statistics
and geometries echoing their data argument. Layer manipulation: deletion,
insertion, extraction and reordering of layers. Deletion of unused variables
from the data object embedded in "ggplot" objects.
Author: Pedro J. Aphalo [aut, cre]
Maintainer: Pedro J. Aphalo <pedro.aphalo@helsinki.fi>
Diff between gginnards versions 0.1.1 dated 2022-10-15 and 0.1.2 dated 2023-05-24
DESCRIPTION | 10 +- MD5 | 22 ++-- NEWS.md | 4 R/data-manip.R | 2 README.md | 20 ++-- build/vignette.rds |binary inst/doc/user-guide-1.html | 22 ++-- inst/doc/user-guide-2.html | 142 ++++++++++++++++--------------- man/figures/README-unnamed-chunk-4-1.png |binary man/figures/README-unnamed-chunk-5-1.png |binary man/figures/README-unnamed-chunk-6-1.png |binary man/figures/README-unnamed-chunk-6-2.png |binary 12 files changed, 119 insertions(+), 103 deletions(-)
Title: T Loux Doing R: Functions to Simplify Data Analysis and
Reporting
Description: Gives a number of functions to aid common data
analysis processes and reporting statistical results in an 'RMarkdown' file.
Data analysis functions combine multiple base R functions used to describe
simple bivariate relationships into a single, easy to use function.
Reporting functions will return character strings to report p-values,
confidence intervals, and hypothesis test and regression results. Strings
will be LaTeX-formatted as necessary and will knit pretty in an 'RMarkdown'
document. The package also provides a wrapper for the CreateTableOne()
function in the 'tableone' package to make the results knit-able.
Author: Travis Loux [aut, cre]
Maintainer: Travis Loux <travis.loux@slu.edu>
Diff between tldr versions 0.2.3 dated 2021-07-28 and 0.3.0 dated 2023-05-24
DESCRIPTION | 8 ++--- MD5 | 8 ++--- R/KreateTableOne.R | 49 ++++++++++++++++++++++-------------- man/KreateTableOne.Rd | 36 ++++++++++++++------------ man/cutp.Rd | 68 +++++++++++++++++++++++++------------------------- 5 files changed, 92 insertions(+), 77 deletions(-)
Title: Non-Invasive Pretty Printing of R Code
Description: Pretty-prints R code without changing the user's formatting
intent.
Author: Kirill Mueller [aut] ,
Lorenz Walthert [cre, aut],
Indrajeet Patil [ctb]
Maintainer: Lorenz Walthert <lorenz.walthert@icloud.com>
Diff between styler versions 1.9.1 dated 2023-03-04 and 1.10.0 dated 2023-05-24
styler-1.10.0/styler/DESCRIPTION | 10 styler-1.10.0/styler/MD5 | 127 ++++---- styler-1.10.0/styler/NAMESPACE | 3 styler-1.10.0/styler/NEWS.md | 25 + styler-1.10.0/styler/R/addins.R | 4 styler-1.10.0/styler/R/compat-dplyr.R | 37 -- styler-1.10.0/styler/R/compat-tidyr.R | 8 styler-1.10.0/styler/R/detect-alignment-utils.R | 8 styler-1.10.0/styler/R/detect-alignment.R | 7 styler-1.10.0/styler/R/environments.R | 8 styler-1.10.0/styler/R/indent.R | 2 styler-1.10.0/styler/R/io.R | 4 styler-1.10.0/styler/R/nest.R | 78 ++--- styler-1.10.0/styler/R/parse.R | 11 styler-1.10.0/styler/R/reindent.R | 6 styler-1.10.0/styler/R/relevel.R | 150 ---------- styler-1.10.0/styler/R/roxygen-examples-parse.R | 10 styler-1.10.0/styler/R/roxygen-examples.R | 10 styler-1.10.0/styler/R/rules-indention.R | 2 styler-1.10.0/styler/R/rules-line-breaks.R | 2 styler-1.10.0/styler/R/rules-tokens.R | 17 - styler-1.10.0/styler/R/style-guides.R | 4 styler-1.10.0/styler/R/styler-package.R | 14 styler-1.10.0/styler/R/stylerignore.R | 15 - styler-1.10.0/styler/R/token-create.R | 2 styler-1.10.0/styler/R/transform-block.R | 4 styler-1.10.0/styler/R/transform-files.R | 6 styler-1.10.0/styler/R/unindent.R | 6 styler-1.10.0/styler/R/utils-navigate-nest.R | 4 styler-1.10.0/styler/R/utils.R | 2 styler-1.10.0/styler/R/visit.R | 23 + styler-1.10.0/styler/R/zzz.R | 43 ++ styler-1.10.0/styler/inst/doc/customizing_styler.html | 42 +- styler-1.10.0/styler/inst/doc/remove_rules.html | 2 styler-1.10.0/styler/man/combine_children.Rd | 4 styler-1.10.0/styler/man/delete_if_cache_directory.Rd |only styler-1.10.0/styler/tests/testthat/_snaps/public_api-1.md |only styler-1.10.0/styler/tests/testthat/_snaps/public_api-3.md |only styler-1.10.0/styler/tests/testthat/roxygen-examples-complete/01-one-function-example-last-proper-run-in.R |only styler-1.10.0/styler/tests/testthat/roxygen-examples-complete/01-one-function-example-last-proper-run-out.R |only styler-1.10.0/styler/tests/testthat/roxygen-examples-complete/02-one-function-examples-last-proper-run-in.R |only styler-1.10.0/styler/tests/testthat/roxygen-examples-complete/02-one-function-examples-last-proper-run-out.R |only styler-1.10.0/styler/tests/testthat/roxygen-examples-complete/03-one-function-example-not-last-proper-run-in.R |only styler-1.10.0/styler/tests/testthat/roxygen-examples-complete/03-one-function-example-not-last-proper-run-out.R |only styler-1.10.0/styler/tests/testthat/roxygen-examples-complete/04-one-function-examples-not-last-proper-run-in.R |only styler-1.10.0/styler/tests/testthat/roxygen-examples-complete/04-one-function-examples-not-last-proper-run-out.R |only styler-1.10.0/styler/tests/testthat/roxygen-examples-complete/05-multiple-function-examples-last-proper-run-in.R |only styler-1.10.0/styler/tests/testthat/roxygen-examples-complete/05-multiple-function-examples-last-proper-run-out.R |only styler-1.10.0/styler/tests/testthat/roxygen-examples-complete/06-multiple-function-examples-no-last-run-in.R |only styler-1.10.0/styler/tests/testthat/roxygen-examples-complete/06-multiple-function-examples-no-last-run-out.R |only styler-1.10.0/styler/tests/testthat/roxygen-examples-complete/07-roxygen-no-dontrun-in.R |only styler-1.10.0/styler/tests/testthat/roxygen-examples-complete/07-roxygen-no-dontrun-out.R |only styler-1.10.0/styler/tests/testthat/roxygen-examples-complete/08-roxygen-dontrun-in.R |only styler-1.10.0/styler/tests/testthat/roxygen-examples-complete/08-roxygen-dontrun-out.R |only styler-1.10.0/styler/tests/testthat/roxygen-examples-complete/09-styler-r-ui-style-string-multiple-in.R |only styler-1.10.0/styler/tests/testthat/roxygen-examples-complete/09-styler-r-ui-style-string-multiple-out.R |only styler-1.10.0/styler/tests/testthat/test-create_token.R | 6 styler-1.10.0/styler/tests/testthat/test-public_api-0.R |only styler-1.10.0/styler/tests/testthat/test-public_api-1.R |only styler-1.10.0/styler/tests/testthat/test-public_api-2.R |only styler-1.10.0/styler/tests/testthat/test-public_api-3.R |only styler-1.10.0/styler/tests/testthat/test-roxygen-examples-complete.R | 18 - styler-1.10.0/styler/tests/testthat/test-transformers-drop.R | 5 styler-1.10.0/styler/tests/testthat/test-zzz.R | 15 + styler-1.10.0/styler/tests/testthat/tests-cache-require-serial.R | 6 styler-1.9.1/styler/man/add_line_col_to_wrapped_expr.Rd |only styler-1.9.1/styler/man/find_block_id.Rd |only styler-1.9.1/styler/man/relocate_eq_assign.Rd |only styler-1.9.1/styler/man/relocate_eq_assign_nest.Rd |only styler-1.9.1/styler/man/relocate_eq_assign_one.Rd |only styler-1.9.1/styler/tests/testthat/roxygen-examples-complete/1-one-function-example-last-proper-run-in.R |only styler-1.9.1/styler/tests/testthat/roxygen-examples-complete/1-one-function-example-last-proper-run-out.R |only styler-1.9.1/styler/tests/testthat/roxygen-examples-complete/2-one-function-examples-last-proper-run-in.R |only styler-1.9.1/styler/tests/testthat/roxygen-examples-complete/2-one-function-examples-last-proper-run-out.R |only styler-1.9.1/styler/tests/testthat/roxygen-examples-complete/3-one-function-example-not-last-proper-run-in.R |only styler-1.9.1/styler/tests/testthat/roxygen-examples-complete/3-one-function-example-not-last-proper-run-out.R |only styler-1.9.1/styler/tests/testthat/roxygen-examples-complete/4-one-function-examples-not-last-proper-run-in.R |only styler-1.9.1/styler/tests/testthat/roxygen-examples-complete/4-one-function-examples-not-last-proper-run-out.R |only styler-1.9.1/styler/tests/testthat/roxygen-examples-complete/5-multiple-function-examples-last-proper-run-in.R |only styler-1.9.1/styler/tests/testthat/roxygen-examples-complete/5-multiple-function-examples-last-proper-run-out.R |only styler-1.9.1/styler/tests/testthat/roxygen-examples-complete/6-multiple-function-examples-no-last-run-in.R |only styler-1.9.1/styler/tests/testthat/roxygen-examples-complete/6-multiple-function-examples-no-last-run-out.R |only styler-1.9.1/styler/tests/testthat/roxygen-examples-complete/7-roxygen-no-dontrun-in.R |only styler-1.9.1/styler/tests/testthat/roxygen-examples-complete/7-roxygen-no-dontrun-out.R |only styler-1.9.1/styler/tests/testthat/roxygen-examples-complete/8-roxygen-dontrun-in.R |only styler-1.9.1/styler/tests/testthat/roxygen-examples-complete/8-roxygen-dontrun-out.R |only styler-1.9.1/styler/tests/testthat/roxygen-examples-complete/9-styler-r-ui-style-string-multiple-in.R |only styler-1.9.1/styler/tests/testthat/roxygen-examples-complete/9-styler-r-ui-style-string-multiple-out.R |only styler-1.9.1/styler/tests/testthat/test-public_api.R |only 89 files changed, 332 insertions(+), 418 deletions(-)
Title: Common R Scripts and Utilities Used by the Statnet Project
Software
Description: Non-statistical utilities used by the software developed by the Statnet Project. They may also be of use to others.
Author: Pavel N. Krivitsky [aut, cre] ,
Skye Bender-deMoll [ctb],
Chad Klumb [ctb]
Maintainer: Pavel N. Krivitsky <pavel@statnet.org>
Diff between statnet.common versions 4.8.0 dated 2023-01-24 and 4.9.0 dated 2023-05-24
DESCRIPTION | 12 +++---- MD5 | 29 ++++++++++------- NAMESPACE | 14 ++++++++ NEWS | 21 ++++++++++++ NEWS.md | 11 ++++++ R/control.utilities.R | 2 - R/logspace.utils.R | 79 ++++++++++++++++++++++++++++++----------------- R/matrix.utils.R |only R/misc.utilities.R | 7 +--- build/stage23.rdb |only build/statnet.common.pdf |binary inst/CITATION | 8 ++-- man/is.SPD.Rd |only man/logspace.utils.Rd | 54 ++++++++++++++++++++------------ man/ssolve.Rd |only man/xTAx.Rd |only src/init.c | 2 + src/logspace_utils.c | 52 +++++++++++++++++++++++++++--- 18 files changed, 210 insertions(+), 81 deletions(-)
More information about statnet.common at CRAN
Permanent link
Title: Interface to Geometry Engine - Open Source ('GEOS')
Description: Interface to Geometry Engine - Open Source ('GEOS') using the C 'API' for topology operations on geometries. Please note that 'rgeos' will be retired during October 2023, plan transition to 'sf' or 'terra' functions using 'GEOS' at your earliest convenience (see <https://r-spatial.org/r/2023/05/15/evolution4.html> and earlier blogs for guidance). The 'GEOS' library is external to the package, and, when installing the package from source, must be correctly installed first. Windows and Mac Intel OS X binaries are provided on 'CRAN'. ('rgeos' >= 0.5-1): Up to and including 'GEOS' 3.7.1, topological operations succeeded with some invalid geometries for which the same operations fail from and including 'GEOS' 3.7.2. The 'checkValidity=' argument defaults and structure have been changed, from default FALSE to integer default '0L' for 'GEOS' < 3.7.2 (no check), '1L' 'GEOS' >= 3.7.2 (check and warn). A value of '2L' is also provided that may be used, assigned globally using 'set [...truncated...]
Author: Roger Bivand [cre, aut] ,
Colin Rundel [aut],
Edzer Pebesma [ctb],
Rainer Stuetz [ctb],
Karl Ove Hufthammer [ctb],
Patrick Giraudoux [ctb],
Martin Davis [cph, ctb],
Sandro Santilli [cph, ctb]
Maintainer: Roger Bivand <Roger.Bivand@nhh.no>
Diff between rgeos versions 0.6-2 dated 2023-03-02 and 0.6-3 dated 2023-05-24
DESCRIPTION | 10 +++++----- MD5 | 14 +++++++------- NEWS.md | 8 ++++++-- R/AAA.R | 20 ++++++++++---------- configure | 18 +++++++++--------- inst/SVN_VERSION | 2 +- man/experimental-functions.Rd | 5 ----- man/rgeos-deprecated.Rd | 11 ----------- 8 files changed, 38 insertions(+), 50 deletions(-)
Title: Gaussian Graphs Models Selection
Description: Graph estimation in Gaussian Graphical Models, following the method
developed by C. Giraud, S. Huet and N. Verzelen (2012) <doi:10.1515/1544-6115.1625>.
The main functions return the adjacency matrix of an undirected graph
estimated from a data matrix.
Author: Annie Bouvier, Christophe Giraud, Sylvie Huet, Verzelen N.
Maintainer: Benjamin Auder <benjamin.auder@universite-paris-saclay.fr>
Diff between GGMselect versions 0.1-12.5 dated 2022-05-01 and 0.1-12.6 dated 2023-05-24
GGMselect-0.1-12.5/GGMselect/NEWS |only GGMselect-0.1-12.6/GGMselect/DESCRIPTION | 10 +++++----- GGMselect-0.1-12.6/GGMselect/MD5 | 7 +++---- GGMselect-0.1-12.6/GGMselect/inst/CITATION | 8 ++++---- GGMselect-0.1-12.6/GGMselect/inst/doc/Notice.pdf |binary 5 files changed, 12 insertions(+), 13 deletions(-)
Title: Pull Data from an 'ArcGIS REST' API
Description: Functions to efficiently query 'ArcGIS REST' APIs
<https://developers.arcgis.com/rest/>.
Both spatial and SQL queries can be used to retrieve data.
Simple Feature (sf) objects are utilized to perform spatial queries.
This package was neither produced nor is maintained by Esri.
Author: Paul Frater [aut, cre] ,
Zac Driscoll [aut]
Maintainer: Paul Frater <paul.frater@wisconsin.gov>
Diff between arcpullr versions 0.2.7 dated 2022-08-30 and 0.2.8 dated 2023-05-24
DESCRIPTION | 14 +-- MD5 | 49 +++++++------ NAMESPACE | 8 ++ R/data.R | 20 +++++ R/imports.R | 6 + R/retrieve_layers.R | 145 +++++++++++++++++++++++++++++++++------- R/retrieve_layers_by_geometry.R | 7 - R/url_objects.R | 11 ++- R/utilities.R | 5 - inst/doc/intro_to_arcpullr.html | 99 ++++++++++++--------------- inst/doc/raster_layers.R | 2 inst/doc/raster_layers.Rmd | 3 inst/doc/raster_layers.html | 98 ++++++++++++--------------- inst/doc/spatial_queries.R | 2 inst/doc/spatial_queries.Rmd | 3 inst/doc/spatial_queries.html | 116 ++++++++++++++------------------ man/example_urls.Rd |only man/get_image_layer.Rd | 133 ++++++++++++++++++------------------ man/get_layer_info.Rd |only man/get_layers_by_spatial.Rd | 123 ++++++++++++++++----------------- man/get_map_layer.Rd | 141 +++++++++++++++++++------------------- man/get_raster_layer.Rd | 117 ++++++++++++++++---------------- man/get_spatial_layer.Rd | 127 +++++++++++++++++------------------ man/get_table_layer.Rd |only man/sql_where.Rd | 65 ++++++++--------- vignettes/raster_layers.Rmd | 3 vignettes/spatial_queries.Rmd | 3 27 files changed, 709 insertions(+), 591 deletions(-)
Title: Scatter Pie Plot
Description: Creates scatterpie plots, especially useful for plotting pies on a map.
Author: Guangchuang Yu [aut, cre]
Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>
Diff between scatterpie versions 0.1.9 dated 2023-04-21 and 0.2.0 dated 2023-05-24
DESCRIPTION | 8 +-- MD5 | 8 +-- NEWS.md | 4 + build/vignette.rds |binary inst/doc/scatterpie.html | 107 ++++++++++++++++++++++++----------------------- 5 files changed, 67 insertions(+), 60 deletions(-)
Title: Single-Case Data Analyses for Single and Multiple Baseline
Designs
Description: A collection of procedures for analysing, visualising,
and managing single-case data. These include piecewise linear regression
models, multilevel models, overlap indices ('PND', 'PEM', 'PAND', 'PET', 'tau-u',
'baseline corrected tau', 'CDC'), and randomization tests. Data preparation functions
support outlier detection, handling missing values, scaling, truncation,
rank transformation, and smoothing. An export function helps to generate
html and latex tables in a publication friendly style. More details can be
found in the online book 'Analyzing single-case data with R and scan', Juergen Wilbert (2013)
<https://jazznbass.github.io/scan-Book/>.
Author: Juergen Wilbert [cre, aut] ,
Timo Lueke [aut]
Maintainer: Juergen Wilbert <juergen.wilbert@uni-potsdam.de>
Diff between scan versions 0.57 dated 2023-02-24 and 0.58 dated 2023-05-24
scan-0.57/scan/R/private_keep_phases.R |only scan-0.57/scan/R/private_names.R |only scan-0.57/scan/R/ranks.R |only scan-0.57/scan/R/shift.R |only scan-0.57/scan/R/show.R |only scan-0.57/scan/R/smooth_cases.R |only scan-0.57/scan/R/standardize.R |only scan-0.57/scan/R/truncate_phase.R |only scan-0.57/scan/data/scan-Data.RData |only scan-0.57/scan/man/Beretvas2008.Rd |only scan-0.57/scan/man/show.Rd |only scan-0.58/scan/DESCRIPTION | 23 - scan-0.58/scan/MD5 | 301 +++++++++++++----------- scan-0.58/scan/NAMESPACE | 3 scan-0.58/scan/NEWS.md | 28 +- scan-0.58/scan/R/add_l2.R | 7 scan-0.58/scan/R/as.data.frame.scdf.R | 2 scan-0.58/scan/R/as_scdf.R | 30 +- scan-0.58/scan/R/autocorr.R | 25 - scan-0.58/scan/R/batch_apply.R |only scan-0.58/scan/R/cdc.R | 161 +++++++----- scan-0.58/scan/R/coefficents.sc_plm.R | 2 scan-0.58/scan/R/convert.R | 228 ++++++++++-------- scan-0.58/scan/R/corrected_tau.R | 63 ++--- scan-0.58/scan/R/deprec-ranks.R |only scan-0.58/scan/R/deprec-shift.R |only scan-0.58/scan/R/deprec-smooth_cases.R |only scan-0.58/scan/R/deprec-standardize.R |only scan-0.58/scan/R/deprec-truncate_phase.R |only scan-0.58/scan/R/deprecated.R | 20 + scan-0.58/scan/R/describe.R | 34 +- scan-0.58/scan/R/design.R | 207 ++++++++-------- scan-0.58/scan/R/estimate_design.R | 74 ++--- scan-0.58/scan/R/export.sc_hplm.R | 2 scan-0.58/scan/R/export.sc_overlap.R | 17 - scan-0.58/scan/R/export.sc_plm.R | 2 scan-0.58/scan/R/export.scdf.R | 10 scan-0.58/scan/R/fill_missing.R | 39 +-- scan-0.58/scan/R/hplm.R | 59 ++-- scan-0.58/scan/R/inherit_roxygen_descriptions.R | 35 +- scan-0.58/scan/R/mplm.R | 80 +++--- scan-0.58/scan/R/nap.R | 90 +++---- scan-0.58/scan/R/outlier.R | 35 +- scan-0.58/scan/R/overlap.R | 75 ++--- scan-0.58/scan/R/pand.R | 74 ++--- scan-0.58/scan/R/pem.R | 14 - scan-0.58/scan/R/pet.R | 14 - scan-0.58/scan/R/pkg-package.R | 9 scan-0.58/scan/R/plm.R | 119 ++++----- scan-0.58/scan/R/plm_contrasts.R | 6 scan-0.58/scan/R/plot.scdf.R | 73 +++-- scan-0.58/scan/R/pnd.R | 12 scan-0.58/scan/R/power_test.R | 98 ++++--- scan-0.58/scan/R/print.sc.R | 12 scan-0.58/scan/R/print.sc_mplm.R | 23 + scan-0.58/scan/R/print.sc_nap.R | 8 scan-0.58/scan/R/print.sc_overlap.R | 10 scan-0.58/scan/R/print.sc_plm.R | 26 +- scan-0.58/scan/R/print.scdf.R | 4 scan-0.58/scan/R/private_check.R | 96 +++++-- scan-0.58/scan/R/private_check_scdf.R | 10 scan-0.58/scan/R/private_mc_function.R | 6 scan-0.58/scan/R/private_options.R | 31 +- scan-0.58/scan/R/private_prepare_scdf.R | 10 scan-0.58/scan/R/private_recombine_phases.R |only scan-0.58/scan/R/private_regression.R | 6 scan-0.58/scan/R/private_utilities.R | 18 - scan-0.58/scan/R/rand_test.R | 14 - scan-0.58/scan/R/random_scdf.R | 8 scan-0.58/scan/R/rci.R | 60 ++-- scan-0.58/scan/R/sample_names.R | 8 scan-0.58/scan/R/scan-Data.R | 72 +---- scan-0.58/scan/R/scan.R | 2 scan-0.58/scan/R/scdf-functions.R | 46 +-- scan-0.58/scan/R/scdf.R | 93 +++---- scan-0.58/scan/R/scdf_attr.R | 33 ++ scan-0.58/scan/R/select_phases.R | 20 - scan-0.58/scan/R/set_vars.R | 12 scan-0.58/scan/R/shinyscan.R |only scan-0.58/scan/R/smd.R | 57 ++-- scan-0.58/scan/R/style_plot.R | 104 ++++---- scan-0.58/scan/R/subset.scdf.R | 23 + scan-0.58/scan/R/summary.scdf.R | 10 scan-0.58/scan/R/sysdata.rda |only scan-0.58/scan/R/tau_u.R | 14 - scan-0.58/scan/R/trend.R | 31 +- scan-0.58/scan/R/write_scdf.R | 9 scan-0.58/scan/README.md | 10 scan-0.58/scan/data/Beretvas2008.rda |only scan-0.58/scan/data/Borckardt2014.rda |only scan-0.58/scan/data/Grosche2011.rda |only scan-0.58/scan/data/Grosche2014.rda |only scan-0.58/scan/data/GruenkeWilbert2014.rda |only scan-0.58/scan/data/Huber2014.rda |only scan-0.58/scan/data/Huitema2000.rda |only scan-0.58/scan/data/Leidig2018.rda |only scan-0.58/scan/data/Leidig2018_l2.rda |only scan-0.58/scan/data/Lenz2013.rda |only scan-0.58/scan/data/Parker2011.rda |only scan-0.58/scan/data/SSDforR2017.rda |only scan-0.58/scan/data/Waddell2011.rda |only scan-0.58/scan/data/byHeart2011.rda |only scan-0.58/scan/data/exampleA1B1A2B2.rda |only scan-0.58/scan/data/exampleA1B1A2B2_zvt.rda |only scan-0.58/scan/data/exampleAB.rda |only scan-0.58/scan/data/exampleABAB.rda |only scan-0.58/scan/data/exampleABC.rda |only scan-0.58/scan/data/exampleABC_150.rda |only scan-0.58/scan/data/exampleABC_outlier.rda |only scan-0.58/scan/data/exampleAB_50.l2.rda |only scan-0.58/scan/data/exampleAB_50.rda |only scan-0.58/scan/data/exampleAB_add.rda |only scan-0.58/scan/data/exampleAB_decreasing.rda |only scan-0.58/scan/data/exampleAB_mpd.rda |only scan-0.58/scan/data/exampleAB_score.rda |only scan-0.58/scan/data/exampleAB_simple.rda |only scan-0.58/scan/data/example_A24.rda |only scan-0.58/scan/inst/CITATION | 2 scan-0.58/scan/inst/shiny |only scan-0.58/scan/man/add_l2.Rd | 9 scan-0.58/scan/man/as.data.frame.scdf.Rd | 2 scan-0.58/scan/man/as_scdf.Rd | 12 scan-0.58/scan/man/autocorr.Rd | 13 - scan-0.58/scan/man/batch_apply.Rd |only scan-0.58/scan/man/cdc.Rd | 57 ++-- scan-0.58/scan/man/coef.sc_plm.Rd | 4 scan-0.58/scan/man/combine.Rd | 19 + scan-0.58/scan/man/convert.Rd | 25 + scan-0.58/scan/man/corrected_tau.Rd | 58 +--- scan-0.58/scan/man/deprecated-functions.Rd | 17 - scan-0.58/scan/man/describe.Rd | 16 - scan-0.58/scan/man/design.Rd | 157 +++++------- scan-0.58/scan/man/dot-inheritParams.Rd | 24 - scan-0.58/scan/man/estimate_design.Rd | 52 ++-- scan-0.58/scan/man/example_data.Rd |only scan-0.58/scan/man/fill_missing.Rd | 29 +- scan-0.58/scan/man/hplm.Rd | 36 +- scan-0.58/scan/man/mplm.Rd | 32 +- scan-0.58/scan/man/nap.Rd | 27 +- scan-0.58/scan/man/outlier.Rd | 24 - scan-0.58/scan/man/overlap.Rd | 33 +- scan-0.58/scan/man/pand.Rd | 57 ++-- scan-0.58/scan/man/pem.Rd | 15 - scan-0.58/scan/man/pet.Rd | 17 - scan-0.58/scan/man/plm.Rd | 61 ++-- scan-0.58/scan/man/plot.scdf.Rd | 57 ++-- scan-0.58/scan/man/plot_rand.Rd | 2 scan-0.58/scan/man/pnd.Rd | 17 - scan-0.58/scan/man/power_test.Rd | 32 +- scan-0.58/scan/man/print.sc.Rd | 9 scan-0.58/scan/man/print.scdf.Rd | 4 scan-0.58/scan/man/rand_test.Rd | 13 - scan-0.58/scan/man/random_scdf.Rd | 6 scan-0.58/scan/man/ranks.Rd | 12 scan-0.58/scan/man/rci.Rd | 26 -- scan-0.58/scan/man/read_scdf.Rd | 4 scan-0.58/scan/man/scan-package.Rd | 3 scan-0.58/scan/man/scdf.Rd | 55 +--- scan-0.58/scan/man/scdf_attr.Rd | 13 - scan-0.58/scan/man/select_cases.Rd | 4 scan-0.58/scan/man/select_phases.Rd | 14 - scan-0.58/scan/man/set_vars.Rd | 4 scan-0.58/scan/man/shift.Rd | 10 scan-0.58/scan/man/shinyscan.Rd |only scan-0.58/scan/man/smd.Rd | 34 +- scan-0.58/scan/man/smooth_cases.Rd | 16 - scan-0.58/scan/man/standardize.Rd | 10 scan-0.58/scan/man/style_plot.Rd | 80 +++--- scan-0.58/scan/man/subset.scdf.Rd | 13 - scan-0.58/scan/man/tau_u.Rd | 69 ++--- scan-0.58/scan/man/transform.scdf.Rd | 2 scan-0.58/scan/man/trend.Rd | 20 - scan-0.58/scan/man/truncate_phase.Rd | 10 scan-0.58/scan/man/write_scdf.Rd | 9 scan-0.58/scan/tests/testthat/test-as_scdf.R |only scan-0.58/scan/tests/testthat/test-autocorr.R |only scan-0.58/scan/tests/testthat/test-cdc.R |only scan-0.58/scan/tests/testthat/test-convert.R |only scan-0.58/scan/tests/testthat/test-corrected.R |only scan-0.58/scan/tests/testthat/test-describe.R |only 180 files changed, 2275 insertions(+), 2028 deletions(-)
Title: Access the 'Strava' API
Description: Functions to access data from the 'Strava v3 API' <https://developers.strava.com/>.
Author: Marcus W. Beck [cre],
Pedro Villarroel [aut],
Daniel Padfield [aut],
Lorenzo Gaborini [aut],
Niklas von Maltzahn [aut]
Maintainer: Marcus W. Beck <mbafs2012@gmail.com>
Diff between rStrava versions 1.1.4 dated 2021-10-27 and 1.2.0 dated 2023-05-24
DESCRIPTION | 15 +++++++-------- MD5 | 32 ++++++++++++++++++-------------- R/compile_activities.R | 13 +++++++++---- R/compile_activity_streams.R | 4 ++-- R/get_activity_streams.R | 5 +++-- R/get_heat_map.R | 8 ++++---- R/get_streams.R | 14 +++++++++----- man/figures/unnamed-chunk-13-1.png |binary man/figures/unnamed-chunk-14-1.png |binary man/figures/unnamed-chunk-14-2.png |binary man/figures/unnamed-chunk-15-1.png |binary man/figures/unnamed-chunk-15-2.png |only man/figures/unnamed-chunk-16-1.png |only man/figures/unnamed-chunk-18-1.png |binary man/figures/unnamed-chunk-19-1.png |only man/figures/unnamed-chunk-19-2.png |only man/get_activity_streams.Rd | 2 +- man/get_heat_map.Rd | 4 ++-- man/get_streams.Rd | 4 ++-- 19 files changed, 57 insertions(+), 44 deletions(-)
Title: Spatiotemporal Resampling Methods for 'mlr3'
Description: Extends the mlr3 ML framework with spatio-temporal resampling
methods to account for the presence of spatiotemporal autocorrelation
(STAC) in predictor variables. STAC may cause highly biased
performance estimates in cross-validation if ignored.
Author: Patrick Schratz [aut, cre] ,
Marc Becker [aut] ,
Jannes Muenchow [ctb] ,
Michel Lang [ctb]
Maintainer: Patrick Schratz <patrick.schratz@gmail.com>
Diff between mlr3spatiotempcv versions 2.0.3 dated 2022-11-18 and 2.1.0 dated 2023-05-24
mlr3spatiotempcv-2.0.3/mlr3spatiotempcv/R/ResamplingRepeatedSptCVCluto.R |only mlr3spatiotempcv-2.0.3/mlr3spatiotempcv/R/ResamplingSptCVCluto.R |only mlr3spatiotempcv-2.0.3/mlr3spatiotempcv/man/autoplot.ResamplingSptCVCluto.Rd |only mlr3spatiotempcv-2.0.3/mlr3spatiotempcv/man/mlr_resamplings_repeated_sptcv_cluto.Rd |only mlr3spatiotempcv-2.0.3/mlr3spatiotempcv/man/mlr_resamplings_sptcv_cluto.Rd |only mlr3spatiotempcv-2.0.3/mlr3spatiotempcv/tests/testthat/setup-cluto.R |only mlr3spatiotempcv-2.0.3/mlr3spatiotempcv/tests/testthat/test-ResamplingRepeatedSptCVCluto.R |only mlr3spatiotempcv-2.0.3/mlr3spatiotempcv/tests/testthat/test-ResamplingSptCVCluto.R |only mlr3spatiotempcv-2.0.3/mlr3spatiotempcv/tests/testthat/test-autoplot_cluto.R |only mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/DESCRIPTION | 17 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/MD5 | 215 +- mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/NAMESPACE | 7 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/NEWS.md | 11 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/R/ResamplingRepeatedSpCVBlock.R | 48 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/R/ResamplingRepeatedSpCVEnv.R | 2 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/R/ResamplingSpCVBlock.R | 43 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/R/ResamplingSpCVBuffer.R | 27 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/R/ResamplingSpCVEnv.R | 2 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/R/autoplot.R | 130 - mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/R/autoplot_spcv_cstf.R | 1 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/R/helper.R | 41 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/R/zzz.R | 10 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/README.md | 2 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/build/partial.rdb |binary mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/build/vignette.rds |binary mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/inst/doc/mlr3spatiotempcv.Rmd | 4 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/inst/doc/mlr3spatiotempcv.html | 127 - mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/inst/doc/spatiotemp-viz.Rmd | 2 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/inst/doc/spatiotemp-viz.html | 81 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/man/autoplot.ResamplingCV.Rd | 1 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/man/autoplot.ResamplingCustomCV.Rd | 1 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/man/autoplot.ResamplingSpCVBlock.Rd | 1 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/man/autoplot.ResamplingSpCVBuffer.Rd | 1 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/man/autoplot.ResamplingSpCVCoords.Rd | 1 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/man/autoplot.ResamplingSpCVDisc.Rd | 1 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/man/autoplot.ResamplingSpCVEnv.Rd | 1 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/man/autoplot.ResamplingSpCVTiles.Rd | 1 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/man/autoplot.ResamplingSptCVCstf.Rd | 1 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/man/mlr_resamplings_repeated_spcv_block.Rd | 61 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/man/mlr_resamplings_repeated_spcv_env.Rd | 6 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/man/mlr_resamplings_spcv_block.Rd | 61 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/man/mlr_resamplings_spcv_buffer.Rd | 52 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/man/mlr_resamplings_spcv_env.Rd | 6 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/tests/testthat/_snaps/1-autoplot/autoplot-show-blocks-true-show-labels-true.svg | 408 ++-- mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/tests/testthat/_snaps/1-autoplot/custom-cv-fold-1-2-sample-fold-n.svg | 64 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/tests/testthat/_snaps/1-autoplot/custom-cv-fold-1-2.svg | 658 +++---- mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/tests/testthat/_snaps/1-autoplot/custom-cv-fold-1-sample-fold-n.svg | 28 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/tests/testthat/_snaps/1-autoplot/custom-cv-fold-1.svg | 328 +-- mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/tests/testthat/_snaps/1-autoplot/cv-fold-1-2-groups-col-role.svg | 838 +++++----- mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/tests/testthat/_snaps/1-autoplot/cv-fold-1-2-sample-fold-n.svg | 70 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/tests/testthat/_snaps/1-autoplot/cv-fold-1-2.svg | 88 - 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More information about mlr3spatiotempcv at CRAN
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Title: Descriptive Analysis by Groups
Description: Create data summaries for quality control, extensive reports for exploring data, as well as publication-ready univariate or bivariate tables in several formats (plain text, HTML,LaTeX, PDF, Word or Excel. Create figures to quickly visualise the distribution of your data (boxplots, barplots, normality-plots, etc.). Display statistics (mean, median, frequencies, incidences, etc.). Perform the appropriate tests (t-test, Analysis of variance, Kruskal-Wallis, Fisher, log-rank, ...) depending on the nature of the described variable (normal, non-normal or qualitative). Summarize genetic data (Single Nucleotide Polymorphisms) data displaying Allele Frequencies and performing Hardy-Weinberg Equilibrium tests among other typical statistics and tests for these kind of data.
Author: Isaac Subirana [aut, cre] ,
Joan Salvador [ctb]
Maintainer: Isaac Subirana <isubirana@imim.es>
Diff between compareGroups versions 4.6.0 dated 2022-11-18 and 4.7.0 dated 2023-05-24
DESCRIPTION | 10 ++-- MD5 | 29 ++++++------ NAMESPACE | 17 ------- NEWS.md | 8 +++ R/export2md.R | 1 R/export2mdcbind.R | 9 ++- R/update.formula2.R | 4 - build/vignette.rds |binary inst/CITATION | 4 - inst/app/rsconnect/shinyapps.io/isubirana/compareGroups.dcf | 6 +- inst/app/rsconnect/shinyapps.io/regicor |only inst/app/server.R | 19 +++++++ inst/app/ui.R | 7 ++ inst/doc/compareGroups_vignette.html | 18 +++++-- man/compareGroups-internal.Rd | 6 +- man/compareGroups-package.Rd | 2 16 files changed, 81 insertions(+), 59 deletions(-)
Title: Bayesian Network Meta-Analysis of Individual and Aggregate Data
Description: Network meta-analysis and network meta-regression models for
aggregate data, individual patient data, and mixtures of both individual
and aggregate data using multilevel network meta-regression as described by
Phillippo et al. (2020) <doi:10.1111/rssa.12579>. Models are estimated in a
Bayesian framework using 'Stan'.
Author: David M. Phillippo [aut, cre]
Maintainer: David M. Phillippo <david.phillippo@bristol.ac.uk>
Diff between multinma versions 0.5.0 dated 2022-08-29 and 0.5.1 dated 2023-05-24
DESCRIPTION | 14 MD5 | 117 - NAMESPACE | 292 +-- NEWS.md | 6 R/integration.R | 22 R/nma.R | 14 R/nma_data-class.R | 11 R/nma_data.R | 2 R/nma_dic-class.R | 40 R/nma_summary-class.R | 46 R/nodesplit_summary-class.R | 16 R/predict.R | 41 R/relative_effects.R | 2 R/stan_nma-class.R | 61 README.md | 6 build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 4 inst/REFERENCES.bib | 10 inst/doc/example_atrial_fibrillation.html | 1693 +++++++++++-------- inst/doc/example_bcg_vaccine.html | 594 ++++-- inst/doc/example_blocker.html | 492 ++++- inst/doc/example_diabetes.html | 868 ++++++--- inst/doc/example_dietary_fat.html | 517 ++++- inst/doc/example_hta_psoriasis.html | 818 ++++++--- inst/doc/example_parkinsons.html | 1126 ++++++++---- inst/doc/example_plaque_psoriasis.html | 523 ++--- inst/doc/example_smoking.html | 714 +++++--- inst/doc/example_statins.html | 507 ++++- inst/doc/example_thrombolytics.html | 943 ++++++---- inst/doc/example_transfusion.html | 546 ++++-- inst/doc/vignette_overview.html | 34 inst/stan/include/transformed_parameters_common.stan | 16 inst/stan/ordered_multinomial.stan | 2 man/dic.Rd | 112 - man/log_t.Rd | 90 - man/nma.Rd | 676 +++---- man/nma_data-class.Rd | 124 - man/nma_dic-class.Rd | 50 man/nma_summary-class.Rd | 90 - man/plot.nma_data.Rd | 190 +- man/plot.nma_dic.Rd | 234 +- man/plot.nma_summary.Rd | 220 +- man/plot_integration_error.Rd | 120 - man/predict.stan_nma.Rd | 386 ++-- man/print.nma_data.Rd | 44 man/priors.Rd | 190 +- man/set_ipd.Rd | 188 +- man/stan_nma-class.Rd | 72 src/Makevars.win | 4 src/stanExports_binomial_1par.h | 508 ++--- src/stanExports_binomial_2par.h | 554 +++--- src/stanExports_normal.h | 462 ++--- src/stanExports_ordered_multinomial.h | 704 ++++--- src/stanExports_poisson.h | 430 ++-- tests/testthat.R | 8 tests/testthat/helper.R |only tests/testthat/test-example_parkinsons.R | 8 tests/testthat/test-example_plaque_psoriasis.R | 4 tests/testthat/test-example_transfusion.R | 32 60 files changed, 9398 insertions(+), 6199 deletions(-)
Title: Access Data from the Public Security Institute of the State of
Rio De Janeiro
Description: Allows access to data from the Rio de Janeiro Public Security Institute (ISP), such as criminal statistics, data on gun seizures and femicide. The package also contains the spatial data of Pacifying Police Units (UPPs) and Integrated Public Safety Regions, Areas and Circumscriptions.
Author: Igor Laltuf [aut, cre] ,
Instituto de Seguranca Publica [aut, cph]
Maintainer: Igor Laltuf <igorlaltuf@gmail.com>
Diff between ispdata versions 1.1 dated 2023-02-10 and 1.1.2 dated 2023-05-24
DESCRIPTION | 8 +- MD5 | 73 +++++++++---------- R/bicycle_theft.R | 25 +++++- R/car_fleet.R | 26 +++++- R/crimes_against_life.R | 53 +++++++++++--- R/gun_seizure.R | 25 +++++- R/gun_seizure_historical.R | 27 ++++++- R/monthly_stats.R | 46 +++++++++--- R/monthly_stats_dictionary.R | 75 ++++++++++++-------- R/population.R | 93 ++++++++++++++++++------- R/spatial_info.R | 25 +++++- R/upp_data.R | 57 +++++++++++---- R/yearly_stats.R | 38 +++++++--- R/yearly_stats_dictionary.R | 75 ++++++++++++-------- README.md | 19 ++--- man/bicycle_theft.Rd | 2 man/car_fleet.Rd | 2 man/crimes_against_life.Rd | 2 man/figures/README-unnamed-chunk-2-1.png |binary man/figures/logo.png |only man/gun_seizure_historical.Rd | 2 man/monthly_stats_dictionary.Rd | 2 man/population.Rd | 2 man/spatial_info.Rd | 2 man/upp_data.Rd | 2 man/yearly_stats.Rd | 2 man/yearly_stats_dictionary.Rd | 2 tests/testthat/test-bicycle_theft.R | 4 - tests/testthat/test-car_fleet.R | 3 tests/testthat/test-crimes_against_life.R | 3 tests/testthat/test-gun_seizure.R | 3 tests/testthat/test-gun_seizure_historical.R | 3 tests/testthat/test-monthly_stats.R | 3 tests/testthat/test-monthly_stats_dictionary.R | 3 tests/testthat/test-population.R | 3 tests/testthat/test-upp_data.R | 3 tests/testthat/test-yearly_stats.R | 3 tests/testthat/test-yearly_stats_dictionary.R | 6 - 38 files changed, 507 insertions(+), 215 deletions(-)
Title: Filter Noisy Data
Description: Noise filter based on determining the proportion of neighboring points. A false point will be rejected if it has only few neighbors, but accepted if the proportion of neighbors in a rectangular frame is high. The size of the rectangular frame as well as the cut-off value, i.e. of a minimum proportion of neighbor-points, may be supplied or can be calculated automatically. Originally designed for the cleaning of heart rates, but suitable for filtering any slowly-changing physiological variable.For more information see Signer (2010)<doi:10.1111/j.2041-210X.2009.00010.x>.
Author: Thomas Ruf [aut, cre]
Maintainer: Thomas Ruf <Thomas.P.Ruf@me.com>
Diff between boxfilter versions 0.1 dated 2022-11-28 and 0.2 dated 2023-05-24
boxfilter-0.1/boxfilter/vignettes/ibex_yearclip_055-comp.jpg |only boxfilter-0.1/boxfilter/vignettes/wb_viemonth-01_02-comp.jpg |only boxfilter-0.2/boxfilter/DESCRIPTION | 10 boxfilter-0.2/boxfilter/MD5 | 28 + boxfilter-0.2/boxfilter/R/boxclip.R | 14 boxfilter-0.2/boxfilter/R/clipview.R | 9 boxfilter-0.2/boxfilter/R/showdata.R |only boxfilter-0.2/boxfilter/R/summary.boxclip.R | 4 boxfilter-0.2/boxfilter/data/sleepduration.RData |only boxfilter-0.2/boxfilter/inst/doc/boxfilter.R | 9 boxfilter-0.2/boxfilter/inst/doc/boxfilter.Rmd | 156 +++++------ boxfilter-0.2/boxfilter/inst/doc/boxfilter.pdf |binary boxfilter-0.2/boxfilter/man/boxclip.Rd | 25 + boxfilter-0.2/boxfilter/man/clipview.Rd | 16 - boxfilter-0.2/boxfilter/man/showdata.Rd |only boxfilter-0.2/boxfilter/man/sleepduration.Rd |only boxfilter-0.2/boxfilter/vignettes/boxfilter.Rmd | 156 +++++------ boxfilter-0.2/boxfilter/vignettes/ibex.jpeg |only boxfilter-0.2/boxfilter/vignettes/wb_month.jpeg |only 19 files changed, 240 insertions(+), 187 deletions(-)
Title: New and Extended Plots, Methods, and Panel Functions for
'lattice'
Description: Extensions to 'lattice', providing new high-level
functions, methods for existing functions, panel functions, and a theme.
Author: Johan Larsson [aut, cre] ,
Deepayan Sarkar [ctb, cph] ,
Brian Ripley [ctb]
Maintainer: Johan Larsson <johanlarsson@outlook.com>
Diff between tactile versions 0.2.0 dated 2018-04-23 and 0.2.1 dated 2023-05-24
DESCRIPTION | 13 MD5 | 102 +- NEWS.md | 16 R/bubbleplot.R | 366 +++---- R/diag.panel.splom.density.R | 20 R/panel.ci.R | 131 +- R/ternaryplot.R | 1560 ++++++++++++++++----------------- README.md | 63 - build/vignette.rds |binary inst/CITATION | 12 inst/WORDLIST |only inst/doc/new-high-level-functions.R | 42 inst/doc/new-high-level-functions.Rmd | 30 inst/doc/new-high-level-functions.html | 300 ++++-- inst/doc/new-methods.R | 20 inst/doc/new-methods.Rmd | 14 inst/doc/new-methods.html | 303 ++++-- inst/doc/new-panel-functions.R | 60 - inst/doc/new-panel-functions.Rmd | 54 - inst/doc/new-panel-functions.html | 279 +++-- inst/doc/tactile-theme.R | 33 inst/doc/tactile-theme.Rmd | 26 inst/doc/tactile-theme.html | 253 +++-- man/bubbleplot.Rd | 16 man/bwplot2.Rd | 40 man/diag.panel.splom.density.Rd | 55 - man/dont_plot.Rd | 2 man/feldspar.Rd | 6 man/panel.bubbleplot.Rd | 4 man/panel.ci.Rd | 90 - man/panel.qqmathci.Rd | 18 man/panel.ternaryplot.Rd | 26 man/panel.ternaryplot.clip.Rd | 9 man/panel.ternaryplot.density.Rd | 18 man/panel.ternaryplot.grid.Rd | 10 man/panel.ternaryplot.response.Rd | 20 man/panel.ternaryplot.scales.Rd | 26 man/prepanel.ci.Rd | 39 man/qqmath.zoo.Rd | 11 man/rescale.Rd | 9 man/seq_pal.Rd | 2 man/setup_key.Rd | 11 man/tactile-package.Rd | 5 man/ternaryplot.Rd | 33 man/xyplot.Arima.Rd | 19 man/xyplot.acf.Rd | 11 man/xyplot.forecast.Rd | 19 man/xyplot.lm.Rd | 26 tests/spelling.R |only vignettes/new-high-level-functions.Rmd | 30 vignettes/new-methods.Rmd | 14 vignettes/new-panel-functions.Rmd | 54 - vignettes/tactile-theme.Rmd | 26 53 files changed, 2481 insertions(+), 1865 deletions(-)
Title: Helper Tools for Australian Hydrologists
Description: Functions to speed up work flow for hydrological analysis.
Focused on Australian climate data (SILO climate data), hydrological models (eWater Source) and in particular South Australia (<https://water.data.sa.gov.au> hydrological data).
Author: Matt Gibbs [aut, cre]
Maintainer: Matt Gibbs <gibbs.ms@gmail.com>
Diff between SWTools versions 0.2.5 dated 2023-04-05 and 1.0 dated 2023-05-24
DESCRIPTION | 6 +++--- MD5 | 6 ++++-- NEWS.md | 4 ++++ R/zzz.R |only inst/CITATION |only 5 files changed, 11 insertions(+), 5 deletions(-)
Title: Simple Features for R
Description: Support for simple features, a standardized way to
encode spatial vector data. Binds to 'GDAL' for reading and writing
data, to 'GEOS' for geometrical operations, and to 'PROJ' for
projection conversions and datum transformations. Uses by default the 's2'
package for spherical geometry operations on ellipsoidal (long/lat) coordinates.
Author: Edzer Pebesma [aut, cre] ,
Roger Bivand [ctb] ,
Etienne Racine [ctb],
Michael Sumner [ctb],
Ian Cook [ctb],
Tim Keitt [ctb],
Robin Lovelace [ctb],
Hadley Wickham [ctb],
Jeroen Ooms [ctb] ,
Kirill Mueller [ctb],
Thomas Lin Pedersen [ctb],
Dan Baston [c [...truncated...]
Maintainer: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Diff between sf versions 1.0-12 dated 2023-03-19 and 1.0-13 dated 2023-05-24
DESCRIPTION | 6 - MD5 | 112 +++++++++++------------ NAMESPACE | 1 NEWS.md | 22 ++++ R/RcppExports.R | 6 + R/agr.R | 3 R/cast_sfc.R | 42 ++++++++ R/crs.R | 5 - R/gdal_utils.R | 12 +- R/geom-predicates.R | 18 +-- R/geom-transformers.R | 14 +- R/graticule.R | 4 R/maps.R | 4 R/plot.R | 20 +++- R/sample.R | 9 + R/sf.R | 19 +++ R/sp.R | 15 ++- R/spatstat.R | 1 R/tidyverse.R | 26 +++++ build/vignette.rds |binary configure | 11 +- configure.ac | 9 + inst/doc/sf1.R | 3 inst/doc/sf1.Rmd | 58 ++++++------ inst/doc/sf1.html | 211 ++++++++++++++++++++++---------------------- inst/doc/sf2.html | 6 - inst/doc/sf4.html | 2 inst/doc/sf5.html | 6 - inst/doc/sf6.html | 2 inst/doc/sf7.html | 8 - inst/docker/gdal/Dockerfile | 17 ++- man/gdal_utils.Rd | 7 - man/geos_unary.Rd | 14 +- man/plot.Rd | 7 + man/st_cast.Rd | 8 + man/st_graticule.Rd | 4 man/st_sample.Rd | 2 man/stars.Rd | 5 - src/Makevars.ucrt | 4 src/RcppExports.cpp | 15 +++ src/gdal.cpp | 2 src/gdal_utils.cpp | 27 +++++ src/geos.cpp | 53 ++++++++++- src/mdim.cpp | 11 +- src/stars.cpp | 5 - tests/aggregate.Rout.save | 10 +- tests/cast.R | 7 + tests/cast.Rout.save | 48 ++++------ tests/crs.Rout.save | 51 ++++++++-- tests/maps.Rout.save | 39 +++++--- tests/roundtrip.R | 2 tests/roundtrip.Rout.save | 6 - tests/sfc.Rout.save | 8 - tests/spatstat.Rout.save | 12 +- tests/testthat/test_sf.R | 5 + tests/testthat/test_tidy.R | 3 vignettes/sf1.Rmd | 58 ++++++------ 57 files changed, 717 insertions(+), 368 deletions(-)
Title: Convenience Functions for Package 'lavaan'
Description: Affords an alternative, vector-based syntax to 'lavaan', as well as other
convenience functions such as naming paths and defining indirect
links automatically, in addition to convenience formatting optimized
for a publication and script sharing workflow.
Author: Remi Theriault [aut, cre]
Maintainer: Remi Theriault <remi.theriault@mail.mcgill.ca>
Diff between lavaanExtra versions 0.1.4 dated 2023-02-04 and 0.1.6 dated 2023-05-24
lavaanExtra-0.1.4/lavaanExtra/inst/doc/fullworkflow.R |only lavaanExtra-0.1.4/lavaanExtra/inst/doc/fullworkflow.Rmd |only lavaanExtra-0.1.4/lavaanExtra/inst/doc/fullworkflow.html |only lavaanExtra-0.1.4/lavaanExtra/inst/doc/indirect.R |only lavaanExtra-0.1.4/lavaanExtra/inst/doc/indirect.Rmd |only lavaanExtra-0.1.4/lavaanExtra/inst/doc/indirect.html |only lavaanExtra-0.1.4/lavaanExtra/inst/doc/regression.R |only lavaanExtra-0.1.4/lavaanExtra/inst/doc/regression.Rmd |only lavaanExtra-0.1.4/lavaanExtra/inst/doc/regression.html |only lavaanExtra-0.1.4/lavaanExtra/inst/doc/special.R |only lavaanExtra-0.1.4/lavaanExtra/inst/doc/special.Rmd |only lavaanExtra-0.1.4/lavaanExtra/inst/doc/special.html |only lavaanExtra-0.1.4/lavaanExtra/inst/doc/test.R |only lavaanExtra-0.1.4/lavaanExtra/inst/doc/test.Rmd |only lavaanExtra-0.1.4/lavaanExtra/inst/doc/test.html |only lavaanExtra-0.1.4/lavaanExtra/tests/testthat/cfaplot.pdf |only lavaanExtra-0.1.4/lavaanExtra/tests/testthat/table.docx |only lavaanExtra-0.1.4/lavaanExtra/tests/testthat/table.html |only lavaanExtra-0.1.4/lavaanExtra/tests/testthat/table.png |only lavaanExtra-0.1.4/lavaanExtra/tests/testthat/table.pptx |only lavaanExtra-0.1.4/lavaanExtra/tests/testthat/testthat-problems.rds |only lavaanExtra-0.1.4/lavaanExtra/vignettes/fullworkflow.Rmd |only lavaanExtra-0.1.4/lavaanExtra/vignettes/images |only lavaanExtra-0.1.4/lavaanExtra/vignettes/indirect.Rmd |only lavaanExtra-0.1.4/lavaanExtra/vignettes/regression.Rmd |only lavaanExtra-0.1.4/lavaanExtra/vignettes/special.Rmd |only lavaanExtra-0.1.4/lavaanExtra/vignettes/test.Rmd |only lavaanExtra-0.1.6/lavaanExtra/DESCRIPTION | 16 lavaanExtra-0.1.6/lavaanExtra/MD5 | 120 - lavaanExtra-0.1.6/lavaanExtra/NAMESPACE | 1 lavaanExtra-0.1.6/lavaanExtra/NEWS.md | 62 lavaanExtra-0.1.6/lavaanExtra/R/cfa_fit_plot.R | 168 +- lavaanExtra-0.1.6/lavaanExtra/R/lavaan_cor.R |only lavaanExtra-0.1.6/lavaanExtra/R/lavaan_cov.R | 106 - lavaanExtra-0.1.6/lavaanExtra/R/lavaan_ind.R | 126 - lavaanExtra-0.1.6/lavaanExtra/R/lavaan_reg.R | 100 - lavaanExtra-0.1.6/lavaanExtra/R/nice_fit.R | 64 lavaanExtra-0.1.6/lavaanExtra/R/nice_lavaanPlot.R | 106 - lavaanExtra-0.1.6/lavaanExtra/R/nice_tidySEM.R | 308 ++-- lavaanExtra-0.1.6/lavaanExtra/R/write_lavaan.R | 2 lavaanExtra-0.1.6/lavaanExtra/R/zzz.R | 18 lavaanExtra-0.1.6/lavaanExtra/README.md | 770 +++++----- lavaanExtra-0.1.6/lavaanExtra/build/vignette.rds |binary lavaanExtra-0.1.6/lavaanExtra/inst/CITATION | 8 lavaanExtra-0.1.6/lavaanExtra/inst/doc/example.Rmd | 760 ++++----- lavaanExtra-0.1.6/lavaanExtra/inst/doc/example.html | 495 +++--- lavaanExtra-0.1.6/lavaanExtra/man/cfa_fit_plot.Rd | 2 lavaanExtra-0.1.6/lavaanExtra/man/figures/README-cfa2-1.png |binary lavaanExtra-0.1.6/lavaanExtra/man/figures/README-covariance-1.png |binary lavaanExtra-0.1.6/lavaanExtra/man/figures/README-indirect2-1.png |binary lavaanExtra-0.1.6/lavaanExtra/man/figures/README-path2-1.png |binary lavaanExtra-0.1.6/lavaanExtra/man/figures/README-saturated-1.png |binary lavaanExtra-0.1.6/lavaanExtra/man/figures/cfaplot.png |binary lavaanExtra-0.1.6/lavaanExtra/man/figures/cfaplot2.png |binary lavaanExtra-0.1.6/lavaanExtra/man/figures/holzinger_model.png |binary lavaanExtra-0.1.6/lavaanExtra/man/figures/semplot.png |binary lavaanExtra-0.1.6/lavaanExtra/man/lavaan_cor.Rd |only lavaanExtra-0.1.6/lavaanExtra/man/lavaan_cov.Rd | 15 lavaanExtra-0.1.6/lavaanExtra/man/lavaan_ind.Rd | 31 lavaanExtra-0.1.6/lavaanExtra/man/lavaan_reg.Rd | 19 lavaanExtra-0.1.6/lavaanExtra/man/nice_fit.Rd | 18 lavaanExtra-0.1.6/lavaanExtra/man/nice_lavaanPlot.Rd | 18 lavaanExtra-0.1.6/lavaanExtra/man/nice_tidySEM.Rd | 15 lavaanExtra-0.1.6/lavaanExtra/man/write_lavaan.Rd | 2 lavaanExtra-0.1.6/lavaanExtra/tests/testthat.R | 24 lavaanExtra-0.1.6/lavaanExtra/tests/testthat/test-cfa_fit_plot.R | 120 - lavaanExtra-0.1.6/lavaanExtra/tests/testthat/test-lavaan_cor.R |only lavaanExtra-0.1.6/lavaanExtra/tests/testthat/test-lavaan_cov.R | 76 lavaanExtra-0.1.6/lavaanExtra/tests/testthat/test-lavaan_ind.R | 77 - lavaanExtra-0.1.6/lavaanExtra/tests/testthat/test-lavaan_reg.R | 77 - lavaanExtra-0.1.6/lavaanExtra/tests/testthat/test-nice_fit.R | 10 lavaanExtra-0.1.6/lavaanExtra/tests/testthat/test-nice_lavaanPlot.R | 134 - lavaanExtra-0.1.6/lavaanExtra/tests/testthat/test-nice_tidySEM.R | 268 +-- lavaanExtra-0.1.6/lavaanExtra/tests/testthat/test-write_lavaan.R | 4 lavaanExtra-0.1.6/lavaanExtra/vignettes/example.Rmd | 760 ++++----- 75 files changed, 2580 insertions(+), 2320 deletions(-)
Title: Read, Plot and Analyse Output from the DEPONS Model
Description: Methods for analyzing population dynamics and movement tracks simulated using the DEPONS model <https://www.depons.eu> (v.3.0), for manipulating input raster files, shipping routes and for analyzing sound propagated from ships.
Author: Jacob Nabe-Nielsen and Caitlin K. Frankish
Maintainer: Jacob Nabe-Nielsen <jnn@ecos.au.dk>
Diff between DEPONS2R versions 1.2.0 dated 2023-04-21 and 1.2.1 dated 2023-05-24
DESCRIPTION | 6 +++--- MD5 | 4 ++-- R/ships_methods.R | 9 +++++++++ 3 files changed, 14 insertions(+), 5 deletions(-)
Title: Download Stats of R Packages
Description: Monthly download stats of 'CRAN' and 'Bioconductor' packages.
Download stats of 'CRAN' packages is from the 'RStudio' 'CRAN mirror', see <https://cranlogs.r-pkg.org:443>.
'Bioconductor' package download stats is at <https://bioconductor.org/packages/stats/>.
Author: Guangchuang Yu [aut, cre]
Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>
Diff between dlstats versions 0.1.6 dated 2022-12-09 and 0.1.7 dated 2023-05-24
DESCRIPTION | 8 MD5 | 50 ++-- NAMESPACE | 54 ++-- R/app.R | 62 ++--- R/bioc_stats.R | 130 ++++++----- R/cran_stats.R | 316 +++++++++++++-------------- R/dlstats.R | 36 +-- R/plot_bioc_stats.R | 196 ++++++++--------- R/utilities.R | 34 +- R/zzz.R | 20 - build/vignette.rds |binary inst/biocApp/server.R | 42 +-- inst/biocApp/ui.R | 46 ++-- inst/cranApp/server.R | 40 +-- inst/cranApp/ui.R | 46 ++-- inst/doc/dlstats.R | 82 +++---- inst/doc/dlstats.Rmd | 196 ++++++++--------- inst/doc/dlstats.html | 516 ++++++++++++++++++++++----------------------- man/biocApp.Rd | 28 +- man/bioc_stats.Rd | 64 ++--- man/cranApp.Rd | 28 +- man/cran_stats.Rd | 60 ++--- man/plot_bioc_stats.Rd | 40 +-- man/plot_cran_stats.Rd | 40 +-- man/set_cran_start_year.Rd | 34 +- vignettes/dlstats.Rmd | 196 ++++++++--------- 26 files changed, 1187 insertions(+), 1177 deletions(-)
Title: Gene Analysis Toolkit
Description: An analysis toolkit focused on genes. It mainly includes five
features (search, convert, analysis, plot, and export).
The user just needs to input feature id ('entrez', 'symbol', 'ensembl' or
'uniprot') to retrieve feature information and 'PubMed'<https://pubmed.ncbi.nlm.nih.gov/> records,
to convert id types, to easily handle gene enrichment analysis and publication-level figures,
to plot group interaction and export results as sheets in one 'excel'
file to easily share and communicate with others.
Author: Yunze Liu [aut, cre]
Maintainer: Yunze Liu <jieandze1314@gmail.com>
Diff between genekitr versions 1.1.9 dated 2023-04-15 and 1.2.2 dated 2023-05-23
ChangeLog |only DESCRIPTION | 10 +-- MD5 | 27 +++++----- NAMESPACE | 3 - R/genInfo.R | 96 +++++++++++++++++++++--------------- R/importShinygo.R |only R/plotGSEA.R | 134 +++++++++++++++++++++++++++++++++++++++------------ R/plotVenn.R | 68 ++++++++++++++++--------- R/transID.R | 3 - R/zzz.R | 10 ++- README.md | 20 +------ man/genInfo.Rd | 2 man/importShinygo.Rd |only man/plotGSEA.Rd | 4 + man/plotVenn.Rd | 4 - man/transId.Rd | 2 16 files changed, 247 insertions(+), 136 deletions(-)
Title: Modeling Count Data with Peer Effects
Description: Likelihood-based estimation and data generation from a class of models used to estimate peer effects on count data by controlling for the network endogeneity. This class includes count data models with social interactions (Houndetoungan 2022; <doi:10.2139/ssrn.3721250>), spatial tobit models (Xu and Lee 2015; <doi:10.1016/j.jeconom.2015.05.004>), and spatial linear-in-means models (Lee 2004; <doi:10.1111/j.1468-0262.2004.00558.x>).
Author: Elysee Aristide Houndetoungan [cre, aut]
Maintainer: Elysee Aristide Houndetoungan <ariel92and@gmail.com>
Diff between CDatanet versions 2.1.0 dated 2023-03-12 and 2.1.1 dated 2023-05-23
DESCRIPTION | 8 ++-- MD5 | 22 ++++++------ NEWS.md | 5 ++ R/CDnetsim.R | 3 + R/RcppExports.R | 12 ++---- R/SARestim.R | 64 ++++++++++++++++-------------------- R/SARsim.R | 2 - R/formula.to.data.R | 38 ++++++++++++++++----- R/jacobSAR.R | 27 ++------------- man/sar.Rd | 3 + src/RcppExports.cpp | 39 ++++++---------------- src/SAR.cpp | 91 ++++++++++++++++++++++------------------------------ 12 files changed, 142 insertions(+), 172 deletions(-)
Title: Simplified Fetching and Processing of Microarray and RNA-Seq
Data
Description: Wrapper around various existing tools and command-line interfaces,
providing a standard interface, simple parallelization, and detailed logging.
For microarray data, maps probe sets to standard gene IDs, building on
'GEOquery' Davis and Meltzer (2007) <doi:10.1093/bioinformatics/btm254>,
'ArrayExpress' Kauffmann et al. (2009) <doi:10.1093/bioinformatics/btp354>,
Robust multi-array average 'RMA' Irizarry et al. (2003) <doi:10.1093/biostatistics/4.2.249>,
and 'BrainArray' Dai et al. (2005) <doi:10.1093/nar/gni179>.
For RNA-seq data, fetches metadata and raw reads from National Center for Biotechnology
Information (NCBI) Sequence Read Archive (SRA), performs standard adapter and
quality trimming using 'TrimGalore' Krueger <https://github.com/FelixKrueger/TrimGalore>,
performs quality control checks using 'FastQC' Andrews <https://github.com/s-andrews/FastQC>,
quantifies transcript abundances using 'salmon' Patro et al. (2017) <doi:10.1038/nmeth.4197& [...truncated...]
Author: Jake Hughey [aut, cre],
Josh Schoenbachler [aut]
Maintainer: Jake Hughey <jakejhughey@gmail.com>
Diff between seeker versions 1.1.2 dated 2023-05-17 and 1.1.3 dated 2023-05-23
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- R/fetch.R | 1 + inst/doc/introduction.html | 4 ++-- inst/doc/reproducibility.html | 4 ++-- tests/testthat/test-fetch.R | 16 ++++++++-------- 6 files changed, 21 insertions(+), 20 deletions(-)
Title: Detect SDGs and Targets in Text
Description: Identify 17 Sustainable Development Goals and associated 169 targets in text.
Author: Yingjie Li [aut, cre] ,
Veronica Frans [aut] ,
Yongze Song [aut] ,
Meng Cai [aut] ,
Yuqian Zhang [aut] ,
Jianguo Liu [aut]
Maintainer: Yingjie Li <yingjieli.edu@gmail.com>
Diff between SDGdetector versions 2.7.2 dated 2023-04-24 and 2.7.3 dated 2023-05-23
DESCRIPTION | 6 MD5 | 23 +- NAMESPACE | 7 NEWS.md | 11 - R/SDGdetector.R | 6 R/globals.R | 1 R/plot_sdg_bar.R | 9 + R/plot_sdg_map.R | 9 + R/summarize_sdg.R |only README.md | 287 ++++++++++++++++++------------------- man/SDGdetector.Rd | 6 man/summarize_sdg.Rd |only tests/testthat/Rplots.pdf |only tests/testthat/test-plot_sdg_map.R | 31 ++- 14 files changed, 215 insertions(+), 181 deletions(-)
Title: Fast Unified Random Forests for Survival, Regression, and
Classification (RF-SRC)
Description: Fast OpenMP parallel computing of Breiman's random forests for univariate, multivariate, unsupervised, survival, competing risks, class imbalanced classification and quantile regression. New Mahalanobis splitting for correlated outcomes. Extreme random forests and randomized splitting. Suite of imputation methods for missing data. Fast random forests using subsampling. Confidence regions and standard errors for variable importance. New improved holdout importance. Case-specific importance. Minimal depth variable importance. Visualize trees on your Safari or Google Chrome browser. Anonymous random forests for data privacy.
Author: Hemant Ishwaran <hemant.ishwaran@gmail.com>, Udaya B. Kogalur <ubk@kogalur.com>
Maintainer: Udaya B. Kogalur <ubk@kogalur.com>
Diff between randomForestSRC versions 3.2.1 dated 2023-03-03 and 3.2.2 dated 2023-05-23
DESCRIPTION | 8 MD5 | 38 - NAMESPACE | 8 R/generic.predict.rfsrc.R | 2 R/plot.rfsrc.R | 16 R/plot.subsample.rfsrc.R | 31 R/rfsrc.R | 4 R/subsample.rfsrc.R | 68 + R/utilities.R | 20 R/utilities.data.R | 48 - R/utilities.subsample.R | 101 +- R/utilities.subsample.bootstrap.R | 68 + configure | 18 configure.ac | 2 inst/NEWS | 12 man/nutrigenomic.Rd | 3 man/plot.subsample.rfsrc.Rd | 14 man/subsample.rfsrc.Rd | 78 +- src/randomForestSRC.c | 1395 +++++++++++++++++++++++++------------- src/randomForestSRC.h | 69 + 20 files changed, 1278 insertions(+), 725 deletions(-)
More information about randomForestSRC at CRAN
Permanent link
Title: Create and Maintain a Relational Database of Data from
PubMed/MEDLINE
Description: Provides a simple interface for extracting various elements from
the publicly available PubMed XML files, incorporating PubMed's regular
updates, and combining the data with the NIH Open Citation Collection. See
Schoenbachler and Hughey (2021) <doi:10.7717/peerj.11071>.
Author: Jake Hughey [aut, cre],
Josh Schoenbachler [aut],
Elliot Outland [aut]
Maintainer: Jake Hughey <jakejhughey@gmail.com>
Diff between pmparser versions 1.0.16 dated 2023-02-12 and 1.0.17 dated 2023-05-23
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- NEWS.md | 3 +++ R/parse_element.R | 3 ++- R/parse_person.R | 4 ++-- build/vignette.rds |binary 6 files changed, 15 insertions(+), 11 deletions(-)
Title: Sample Size Calculations for Molecular and Phylogenetic Studies
Description: Implements novel tools for estimating sample sizes needed for phylogenetic studies, including
studies focused on estimating the probability of true pathogen transmission between two cases given phylogenetic linkage and studies focused on tracking pathogen variants at a population level. Methods described in Wohl, Giles, and Lessler (2021) and in Wohl, Lee, DiPrete, and Lessler (2023).
Author: Shirlee Wohl [aut, ctb],
Elizabeth C Lee [aut, ctb],
Lucy D'Agostino McGowan [aut, ctb]
,
John R Giles [aut, ctb],
Justin Lessler [aut, cre]
Maintainer: Justin Lessler <jlessler@unc.edu>
Diff between phylosamp versions 0.1.6 dated 2021-11-22 and 1.0.1 dated 2023-05-23
phylosamp-0.1.6/phylosamp/R/examples |only phylosamp-0.1.6/phylosamp/R/phylosamp_data.R |only phylosamp-0.1.6/phylosamp/R/phylosamp_funcs.R |only phylosamp-0.1.6/phylosamp/data/gen_dist_sim.rda |only phylosamp-0.1.6/phylosamp/inst/doc/V1_FalseDicoveryRate.R |only phylosamp-0.1.6/phylosamp/inst/doc/V1_FalseDicoveryRate.Rmd |only phylosamp-0.1.6/phylosamp/inst/doc/V1_FalseDicoveryRate.html |only phylosamp-0.1.6/phylosamp/inst/doc/V2_SampleSize.R |only phylosamp-0.1.6/phylosamp/inst/doc/V2_SampleSize.Rmd |only phylosamp-0.1.6/phylosamp/inst/doc/V2_SampleSize.html |only phylosamp-0.1.6/phylosamp/inst/doc/V3_SensitivitySpecificity.R |only phylosamp-0.1.6/phylosamp/inst/doc/V3_SensitivitySpecificity.Rmd |only phylosamp-0.1.6/phylosamp/inst/doc/V3_SensitivitySpecificity.html |only phylosamp-0.1.6/phylosamp/inst/doc/V4_FullExamples.R |only phylosamp-0.1.6/phylosamp/inst/doc/V4_FullExamples.Rmd |only phylosamp-0.1.6/phylosamp/inst/doc/V4_FullExamples.html |only phylosamp-0.1.6/phylosamp/man/gen_dist_sim.Rd |only phylosamp-0.1.6/phylosamp/tests/test-exp_links.R |only phylosamp-0.1.6/phylosamp/tests/test-falsediscoveryrate.R |only phylosamp-0.1.6/phylosamp/tests/test-gen_dists.R |only phylosamp-0.1.6/phylosamp/tests/test-get_optim_roc.R |only phylosamp-0.1.6/phylosamp/tests/test-obs_pairs_mtml.R |only phylosamp-0.1.6/phylosamp/tests/test-obs_pairs_mtsl.R |only phylosamp-0.1.6/phylosamp/tests/test-obs_pairs_stsl.R |only phylosamp-0.1.6/phylosamp/tests/test-prob_trans_mtml.R |only phylosamp-0.1.6/phylosamp/tests/test-prob_trans_mtsl.R |only phylosamp-0.1.6/phylosamp/tests/test-prob_trans_stsl.R |only phylosamp-0.1.6/phylosamp/tests/test-samplesize.R |only phylosamp-0.1.6/phylosamp/tests/test-sens_spec_calc.R |only phylosamp-0.1.6/phylosamp/tests/test-sens_spec_roc.R |only phylosamp-0.1.6/phylosamp/tests/test-true_pairs.R |only phylosamp-0.1.6/phylosamp/tests/test-true_pairs_mtml.R |only phylosamp-0.1.6/phylosamp/tests/test-true_pairs_mtsl.R |only phylosamp-0.1.6/phylosamp/tests/test-true_pairs_stsl.R |only phylosamp-0.1.6/phylosamp/tests/test-truediscoveryrate.R |only phylosamp-0.1.6/phylosamp/vignettes/V1_FalseDicoveryRate.Rmd |only phylosamp-0.1.6/phylosamp/vignettes/V2_SampleSize.Rmd |only phylosamp-0.1.6/phylosamp/vignettes/V3_SensitivitySpecificity.Rmd |only phylosamp-0.1.6/phylosamp/vignettes/V4_FullExamples.Rmd |only phylosamp-1.0.1/phylosamp/DESCRIPTION | 37 - phylosamp-1.0.1/phylosamp/MD5 | 340 +++++++--- phylosamp-1.0.1/phylosamp/NAMESPACE | 40 + phylosamp-1.0.1/phylosamp/NEWS.md |only phylosamp-1.0.1/phylosamp/R/exp_links.R |only phylosamp-1.0.1/phylosamp/R/falsediscoveryrate.R |only phylosamp-1.0.1/phylosamp/R/genDistSim.R |only phylosamp-1.0.1/phylosamp/R/gen_dists.R |only phylosamp-1.0.1/phylosamp/R/gendist_distribution.R |only phylosamp-1.0.1/phylosamp/R/gendist_roc_format.R |only phylosamp-1.0.1/phylosamp/R/gendist_sensspec_cutoff.R |only phylosamp-1.0.1/phylosamp/R/get_optim_roc.R |only phylosamp-1.0.1/phylosamp/R/obs_pairs_mtml.R |only phylosamp-1.0.1/phylosamp/R/obs_pairs_mtsl.R |only phylosamp-1.0.1/phylosamp/R/obs_pairs_stsl.R |only phylosamp-1.0.1/phylosamp/R/optim_roc_threshold.R |only phylosamp-1.0.1/phylosamp/R/phylosamp-package.R |only phylosamp-1.0.1/phylosamp/R/prob_trans_mtml.R |only phylosamp-1.0.1/phylosamp/R/prob_trans_mtsl.R |only phylosamp-1.0.1/phylosamp/R/prob_trans_stsl.R |only phylosamp-1.0.1/phylosamp/R/relR_power.R |only phylosamp-1.0.1/phylosamp/R/relR_power_simulated.R |only phylosamp-1.0.1/phylosamp/R/relR_samplesize.R |only phylosamp-1.0.1/phylosamp/R/relR_samplesize_basic.R |only phylosamp-1.0.1/phylosamp/R/relR_samplesize_ci.R |only phylosamp-1.0.1/phylosamp/R/relR_samplesize_linkerr.R |only phylosamp-1.0.1/phylosamp/R/relR_samplesize_simsolve.R |only phylosamp-1.0.1/phylosamp/R/relR_samplesize_solve.R |only phylosamp-1.0.1/phylosamp/R/samplesize.R |only phylosamp-1.0.1/phylosamp/R/sens_spec_calc.R |only phylosamp-1.0.1/phylosamp/R/sens_spec_roc.R |only phylosamp-1.0.1/phylosamp/R/translink_expected_links_obs.R |only phylosamp-1.0.1/phylosamp/R/translink_expected_links_obs_mtml.R |only phylosamp-1.0.1/phylosamp/R/translink_expected_links_obs_mtsl.R |only phylosamp-1.0.1/phylosamp/R/translink_expected_links_obs_stsl.R |only phylosamp-1.0.1/phylosamp/R/translink_expected_links_true.R |only phylosamp-1.0.1/phylosamp/R/translink_expected_links_true_mtml.R |only phylosamp-1.0.1/phylosamp/R/translink_expected_links_true_mtsl.R |only phylosamp-1.0.1/phylosamp/R/translink_expected_links_true_stsl.R |only phylosamp-1.0.1/phylosamp/R/translink_fdr.R |only phylosamp-1.0.1/phylosamp/R/translink_prob_transmit.R |only phylosamp-1.0.1/phylosamp/R/translink_prob_transmit_mtml.R |only phylosamp-1.0.1/phylosamp/R/translink_prob_transmit_mtsl.R |only phylosamp-1.0.1/phylosamp/R/translink_prob_transmit_stsl.R |only phylosamp-1.0.1/phylosamp/R/translink_samplesize.R |only 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phylosamp-1.0.1/phylosamp/R/vartrack_samplesize_detect_cont.R |only phylosamp-1.0.1/phylosamp/R/vartrack_samplesize_detect_xsect.R |only phylosamp-1.0.1/phylosamp/R/vartrack_samplesize_prev.R |only phylosamp-1.0.1/phylosamp/R/vartrack_samplesize_prev_xsect.R |only phylosamp-1.0.1/phylosamp/README.md | 55 + phylosamp-1.0.1/phylosamp/build/vignette.rds |binary phylosamp-1.0.1/phylosamp/data/genDistSim.rda |only phylosamp-1.0.1/phylosamp/inst/CITATION | 20 phylosamp-1.0.1/phylosamp/inst/doc/L1_FalseDiscoveryRate.R |only phylosamp-1.0.1/phylosamp/inst/doc/L1_FalseDiscoveryRate.Rmd |only phylosamp-1.0.1/phylosamp/inst/doc/L1_FalseDiscoveryRate.html |only phylosamp-1.0.1/phylosamp/inst/doc/L2_SampleSize.R |only phylosamp-1.0.1/phylosamp/inst/doc/L2_SampleSize.Rmd |only phylosamp-1.0.1/phylosamp/inst/doc/L2_SampleSize.html |only phylosamp-1.0.1/phylosamp/inst/doc/L3_SensitivitySpecificity.R |only phylosamp-1.0.1/phylosamp/inst/doc/L3_SensitivitySpecificity.Rmd |only 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Title: Functional Data Analysis
Description: These functions were developed to support functional data
analysis as described in Ramsay, J. O. and Silverman, B. W.
(2005) Functional Data Analysis. New York: Springer and in
Ramsay, J. O., Hooker, Giles, and Graves, Spencer (2009).
Functional Data Analysis with R and Matlab (Springer).
The package includes data sets and script files working many examples
including all but one of the 76 figures in this latter book. Matlab versions
are available by ftp from
<https://www.psych.mcgill.ca/misc/fda/downloads/FDAfuns/>.
Author: James Ramsay [aut, cre],
Giles Hooker [ctb],
Spencer Graves [ctb]
Maintainer: James Ramsay <ramsay@psych.mcgill.ca>
Diff between fda versions 6.0.5 dated 2022-07-04 and 6.1.4 dated 2023-05-23
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Title: Tidy Dataframes and Expressions with Statistical Details
Description: Utilities for producing dataframes with rich details for the
most common types of statistical approaches and tests: parametric,
nonparametric, robust, and Bayesian t-test, one-way ANOVA, correlation
analyses, contingency table analyses, and meta-analyses. The
functions are pipe-friendly and provide a consistent syntax to work
with tidy data. These dataframes additionally contain expressions with
statistical details, and can be used in graphing packages. This
package also forms the statistical processing backend for
'ggstatsplot'. References: Patil (2021) <doi:10.21105/joss.03236>.
Author: Indrajeet Patil [cre, aut, cph]
Maintainer: Indrajeet Patil <patilindrajeet.science@gmail.com>
Diff between statsExpressions versions 1.5.0 dated 2023-02-19 and 1.5.1 dated 2023-05-23
DESCRIPTION | 22 MD5 | 54 +- NEWS.md | 95 ++- R/long_to_wide_converter.R | 198 +++---- R/one_sample_test.R | 196 +++---- R/oneway_anova.R | 560 +++++++++++----------- R/pairwise_comparisons.R | 598 +++++++++++------------- R/two_sample_test.R | 439 ++++++++--------- README.md | 12 build/vignette.rds |binary inst/WORDLIST | 11 inst/doc/statsExpressions.R | 11 inst/doc/statsExpressions.Rmd | 35 - inst/doc/statsExpressions.html | 57 +- inst/doc/stats_details.html | 7 man/oneway_anova.Rd | 5 man/pairwise_comparisons.Rd | 3 man/tidy_model_parameters.Rd | 16 tests/testthat.R | 8 tests/testthat/_snaps/centrality_description.md | 4 tests/testthat/test-centrality_description.R | 12 tests/testthat/test-corr_test.R | 276 +++++------ tests/testthat/test-one_two_sample_dataframes.R | 196 +++---- tests/testthat/test-oneway_anova_bayes.R | 194 +++---- tests/testthat/test-oneway_anova_parametric.R | 4 tests/testthat/test-pairwise_comparisons.R | 2 vignettes/statsExpressions.Rmd | 35 - vignettes/web_only/dataframe_outputs.Rmd | 1 28 files changed, 1529 insertions(+), 1522 deletions(-)
More information about statsExpressions at CRAN
Permanent link
Title: Variance Components Testing for Linear and Nonlinear Mixed
Effects Models
Description: An implementation of the Likelihood ratio Test (LRT) for testing that,
in a (non)linear mixed effects model, the variances of a subset of the random
effects are equal to zero. There is no restriction on the subset of variances
that can be tested: for example, it is possible to test that all the variances
are equal to zero. Note that the implemented test is asymptotic.
This package should be used on model fits from packages 'nlme', 'lmer', and 'saemix'.
Charlotte Baey, Paul-Henry Cournède and Estelle Kuhn (2019) <doi:10.1016/j.csda.2019.01.014>.
Author: Charlotte Baey [aut, cre] ,
Estelle Kuhn [aut]
Maintainer: Charlotte Baey <charlotte.baey@univ-lille.fr>
Diff between varTestnlme versions 1.3.2 dated 2023-05-03 and 1.3.3 dated 2023-05-23
DESCRIPTION | 6 MD5 | 11 NAMESPACE | 1 NEWS.md | 4 R/lme_utilities.R | 8 inst/doc/varTestnlme.html | 533 +++++++++++++++++++++------------------------- man/extractFIM.lme.Rd |only 7 files changed, 268 insertions(+), 295 deletions(-)
Title: Matrices in Data Frames
Description: Provides functions to collapse a tidy data frame into matrices in a data frame
and expand a data frame of matrices into a tidy data frame.
Author: Matthew Heun [aut, cre]
Maintainer: Matthew Heun <matthew.heun@me.com>
Diff between matsindf versions 0.4.1 dated 2023-04-26 and 0.4.3 dated 2023-05-23
DESCRIPTION | 12 ++++++------ MD5 | 28 ++++++++++++++-------------- NEWS.md | 22 +++++++++++++++++++++- R/collapse.R | 23 ++++++++++++++++++----- R/utilities.R | 22 ++++++++++++++++++---- inst/CITATION | 4 ++-- inst/WORDLIST | 1 + inst/doc/iris_pca.html | 4 ++-- inst/doc/matsindf.html | 4 ++-- inst/doc/midf_apply_primer.html | 4 ++-- man/collapse_to_matrices.Rd | 10 ++++++++-- man/rowcolval_to_mat.Rd | 10 ++++++++-- tests/testthat/test-collapse.R | 35 +++++++++++++++++++++++------------ tests/testthat/test-expand.R | 2 +- tests/testthat/test-utilities.R | 30 +++++++++++++++++++++--------- 15 files changed, 147 insertions(+), 64 deletions(-)
Title: Clinical Trials with Intercurrent Events Simulator
Description: Simulates clinical trials and summarizes causal effects and treatment policy estimands in the presence of intercurrent events in a transparent and intuitive manner.
Author: Ahmad Hakeem Abdul Wahab [aut, cre]
,
Yongming Qu [aut],
Hege Michiels [aut],
Junxiang Luo [aut],
Run Zhuang [aut],
Dominique McDaniel [aut],
Dong Xi [aut],
Elena Polverejan [aut],
Steven Gilbert [aut],
Stephen Ruberg [aut],
Arman Sabbagh [aut]
Maintainer: Ahmad Hakeem Abdul Wahab <hakeemwahab00@gmail.com>
Diff between cities versions 0.1.1 dated 2023-02-14 and 0.1.2 dated 2023-05-23
DESCRIPTION | 9 MD5 | 10 NAMESPACE | 3 build/vignette.rds |binary inst/doc/CITIES_demo.R | 1108 +++++++++++------------ inst/doc/CITIES_demo.html | 2142 +++++++++++++++++++++++----------------------- 6 files changed, 1636 insertions(+), 1636 deletions(-)
Title: MCMC, Particle Filtering, and Programmable Hierarchical Modeling
Description: A system for writing hierarchical statistical models largely
compatible with 'BUGS' and 'JAGS', writing nimbleFunctions to operate models
and do basic R-style math, and compiling both models and nimbleFunctions via
custom-generated C++. 'NIMBLE' includes default methods for MCMC, Monte Carlo
Expectation Maximization, and some other tools. The nimbleFunction system makes
it easy to do things like implement new MCMC samplers from R, customize the
assignment of samplers to different parts of a model from R, and compile the
new samplers automatically via C++ alongside the samplers 'NIMBLE' provides.
'NIMBLE' extends the 'BUGS'/'JAGS' language by making it extensible: New
distributions and functions can be added, including as calls to external
compiled code. Although most people think of MCMC as the main goal of the
'BUGS'/'JAGS' language for writing models, one can use 'NIMBLE' for writing
arbitrary other kinds of model-generic algorithms as well. A full User Manual is
available at <htt [...truncated...]
Author: Perry de Valpine [aut],
Christopher Paciorek [aut, cre],
Daniel Turek [aut],
Nick Michaud [aut],
Cliff Anderson-Bergman [aut],
Fritz Obermeyer [aut],
Claudia Wehrhahn Cortes [aut] ,
Abel Rodriguez [aut] ,
Duncan Temple Lang [aut] ,
Wei Zhang [aut] ,
[...truncated...]
Maintainer: Christopher Paciorek <paciorek@stat.berkeley.edu>
Diff between nimble versions 0.13.2 dated 2023-05-14 and 1.0.0 dated 2023-05-23
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nimble-1.0.0/nimble/inst/include/nimble/nimbleGraph.h | 58 nimble-1.0.0/nimble/inst/include/nimble/nodeFun.h | 155 + nimble-1.0.0/nimble/inst/include/nimble/predefinedNimbleLists.h | 83 nimble-1.0.0/nimble/inst/include/nimble_ADbase_extensions.hpp |only nimble-1.0.0/nimble/inst/include/nimble_ADbase_tape_link_extensions.hpp |only nimble-1.0.0/nimble/inst/include/nimble_atomic_index.hpp |only nimble-1.0.0/nimble/inst/include/tape_link.hpp |only nimble-1.0.0/nimble/inst/make/Makevars | 2 nimble-1.0.0/nimble/inst/make/Makevars.win.in | 2 nimble-1.0.0/nimble/inst/make/Makevars_lib | 2 nimble-1.0.0/nimble/man/ADNimbleList.Rd | 6 nimble-1.0.0/nimble/man/ADbreak.Rd |only nimble-1.0.0/nimble/man/ADproxyModelClass-class.Rd |only nimble-1.0.0/nimble/man/MCMCconf-class.Rd | 19 nimble-1.0.0/nimble/man/MCMCsuite.Rd | 2 nimble-1.0.0/nimble/man/buildAuxiliaryFilter.Rd | 2 nimble-1.0.0/nimble/man/buildBootstrapFilter.Rd | 2 nimble-1.0.0/nimble/man/buildEnsembleKF.Rd | 2 nimble-1.0.0/nimble/man/buildIteratedFilter2.Rd | 2 nimble-1.0.0/nimble/man/buildLiuWestFilter.Rd | 2 nimble-1.0.0/nimble/man/buildMCEM.Rd | 4 nimble-1.0.0/nimble/man/buildMCMC.Rd | 31 nimble-1.0.0/nimble/man/calculateWAIC.Rd | 11 nimble-1.0.0/nimble/man/clearCompiled.Rd |only nimble-1.0.0/nimble/man/compareMCMCs.Rd | 2 nimble-1.0.0/nimble/man/getConditionallyIndependentSets.Rd | 103 nimble-1.0.0/nimble/man/laplace.Rd |only nimble-1.0.0/nimble/man/makeModelDerivsInfo.Rd |only nimble-1.0.0/nimble/man/modelBaseClass-class.Rd | 53 nimble-1.0.0/nimble/man/modelInitialization.Rd | 3 nimble-1.0.0/nimble/man/nimDerivs.Rd | 49 nimble-1.0.0/nimble/man/nimble-internal.Rd | 5 nimble-1.0.0/nimble/man/nimbleFunction.Rd | 4 nimble-1.0.0/nimble/man/nimbleFunctionVirtual.Rd | 7 nimble-1.0.0/nimble/man/nimbleMCMC.Rd | 6 nimble-1.0.0/nimble/man/nimbleModel.Rd | 3 nimble-1.0.0/nimble/man/optimControlNimbleList.Rd | 2 nimble-1.0.0/nimble/man/optimResultNimbleList.Rd | 2 nimble-1.0.0/nimble/man/parameterTransform.Rd |only nimble-1.0.0/nimble/man/pow_int.Rd |only nimble-1.0.0/nimble/man/runMCMC.Rd | 2 nimble-1.0.0/nimble/man/samplers.Rd | 17 nimble-1.0.0/nimble/man/setupMargNodes.Rd |only nimble-1.0.0/nimble/man/summaryLaplace.Rd |only nimble-1.0.0/nimble/man/waic.Rd | 11 nimble-1.0.0/nimble/man/waicDetailsNimbleList.Rd |only nimble-1.0.0/nimble/man/waicNimbleList.Rd |only nimble-1.0.0/nimble/src/nimble.cpp | 4 nimble-1.0.0/nimble/tests/testthat/AD_distribution_test_lists.R |only nimble-1.0.0/nimble/tests/testthat/AD_knownFailures.R |only nimble-1.0.0/nimble/tests/testthat/AD_math_test_lists.R |only nimble-1.0.0/nimble/tests/testthat/AD_test_utils.R |only nimble-1.0.0/nimble/tests/testthat/dynamicIndexingTestLists.R | 10 nimble-1.0.0/nimble/tests/testthat/mathTestLists.R | 4 nimble-1.0.0/nimble/tests/testthat/mcmcTestLog.Rout | 65 nimble-1.0.0/nimble/tests/testthat/test-ADbackSolve.R |only nimble-1.0.0/nimble/tests/testthat/test-ADbasics.R |only nimble-1.0.0/nimble/tests/testthat/test-ADchol.R |only nimble-1.0.0/nimble/tests/testthat/test-ADdists.R |only nimble-1.0.0/nimble/tests/testthat/test-ADdsl.R |only nimble-1.0.0/nimble/tests/testthat/test-ADerrorTrapping.R |only nimble-1.0.0/nimble/tests/testthat/test-ADforwardSolve.R |only nimble-1.0.0/nimble/tests/testthat/test-ADfunctions.R | 544 ++++- nimble-1.0.0/nimble/tests/testthat/test-ADlaplace.R |only nimble-1.0.0/nimble/tests/testthat/test-ADmatInverse.R |only nimble-1.0.0/nimble/tests/testthat/test-ADmatMult.R |only nimble-1.0.0/nimble/tests/testthat/test-ADmatMult_model.R |only nimble-1.0.0/nimble/tests/testthat/test-ADmodels-bigmv.R |only nimble-1.0.0/nimble/tests/testthat/test-ADmodels.R | 693 ++++++ nimble-1.0.0/nimble/tests/testthat/test-ADoptim.R |only nimble-1.0.0/nimble/tests/testthat/test-car.R | 2 nimble-1.0.0/nimble/tests/testthat/test-checkDSL.R | 136 + nimble-1.0.0/nimble/tests/testthat/test-coreR.R | 2 nimble-1.0.0/nimble/tests/testthat/test-crossVal.R | 20 nimble-1.0.0/nimble/tests/testthat/test-dynamicIndexing.R | 5 nimble-1.0.0/nimble/tests/testthat/test-getDependencies.R | 151 - nimble-1.0.0/nimble/tests/testthat/test-getParam.R | 6 nimble-1.0.0/nimble/tests/testthat/test-macros.R | 2 nimble-1.0.0/nimble/tests/testthat/test-math.R | 1 nimble-1.0.0/nimble/tests/testthat/test-mcmc.R | 129 - nimble-1.0.0/nimble/tests/testthat/test-mcmcrj.R | 14 nimble-1.0.0/nimble/tests/testthat/test-models.R | 117 - nimble-1.0.0/nimble/tests/testthat/test-nimbleList.R | 81 nimble-1.0.0/nimble/tests/testthat/test-optim.R | 79 nimble-1.0.0/nimble/tests/testthat/test-parameterTransform.R |only nimble-1.0.0/nimble/tests/testthat/test-setData.R | 71 nimble-1.0.0/nimble/tests/testthat/test-setupMargNodes.R |only nimble-1.0.0/nimble/tests/testthat/test-size.R | 5 nimble-1.0.0/nimble/tests/testthat/test-user.R | 73 nimble-1.0.0/nimble/tests/testthat/test-waic.R | 57 nimble-1.0.0/nimble/tests/testthat/test_utils.R | 302 ++ 217 files changed, 10918 insertions(+), 2393 deletions(-)
Title: Stock Assessment Methods Toolkit
Description: Simulation tools for closed-loop simulation are provided for the 'MSEtool' operating model to inform data-rich fisheries.
'SAMtool' provides a conditioning model, assessment models of varying complexity with standardized reporting,
model-based management procedures, and diagnostic tools for evaluating assessments inside closed-loop simulation.
Author: Quang Huynh [aut, cre],
Tom Carruthers [aut],
Adrian Hordyk [aut]
Maintainer: Quang Huynh <quang@bluematterscience.com>
Diff between SAMtool versions 1.5.2 dated 2023-04-04 and 1.5.3 dated 2023-05-23
DESCRIPTION | 17 +++++++++-------- MD5 | 28 ++++++++++++++-------------- NAMESPACE | 1 - NEWS.md | 6 +++++- R/Ancillary_Indicators.R | 18 ++++++++++-------- R/HCRs.R | 10 +++++----- R/Misc_fun.R | 22 +++------------------- R/assess_SCA.R | 4 ++-- R/interim_MP.R | 2 +- R/z_MPs.R | 13 ++++++++++--- build/partial.rdb |binary man/HCR_ramp.Rd | 10 +++++----- man/HCR_segment.Rd | 10 +++++----- man/make_MP.Rd | 4 ++-- man/plot_crosscorr.Rd | 2 +- 15 files changed, 72 insertions(+), 75 deletions(-)
Title: Clustering and Prediction using Multi-Task Gaussian Processes
with Common Mean
Description: An implementation for the multi-task Gaussian processes with common
mean framework. Two main algorithms, called 'Magma' and 'MagmaClust',
are available to perform predictions for supervised learning problems, in
particular for time series or any functional/continuous data applications.
The corresponding articles has been respectively proposed by Arthur Leroy,
Pierre Latouche, Benjamin Guedj and Servane Gey (2022)
<doi:10.1007/s10994-022-06172-1>, and Arthur Leroy, Pierre Latouche,
Benjamin Guedj and Servane Gey (2023) <https://jmlr.org/papers/v24/20-1321.html>.
Theses approaches leverage the learning of cluster-specific mean processes,
which are common across similar tasks, to provide enhanced prediction
performances (even far from data) at a linear computational cost (in
the number of tasks). 'MagmaClust' is a generalisation of 'Magma'
where the tasks are simultaneously clustered into groups, each being
associated to a specific mean process. User-oriented functions in th [...truncated...]
Author: Arthur Leroy [aut, cre] ,
Pierre Latouche [aut],
Pierre Pathe [ctb],
Alexia Grenouillat [ctb],
Hugo Lelievre [ctb]
Maintainer: Arthur Leroy <arthur.leroy.pro@gmail.com>
Diff between MagmaClustR versions 1.1.1 dated 2023-01-17 and 1.1.2 dated 2023-05-23
DESCRIPTION | 8 MD5 | 28 NEWS.md | 6 R/data.R | 74 R/package-MagmaClustR.R | 3 R/prediction.R | 134 R/training.R | 3777 +++++++--------- README.md | 38 man/MagmaClustR.Rd | 3 man/figures/README-display_MagmaClust-1.png |binary man/figures/README-gif_Magma-1.gif |binary man/figures/README-train_and_predict_Magma_in_2-D-1.png |binary man/hyperposterior.Rd | 37 man/hyperposterior_clust.Rd | 47 man/weight.Rd | 2 15 files changed, 2136 insertions(+), 2021 deletions(-)
Title: Visualize the Climate Scenario Alignment of a Financial
Portfolio
Description: Create plots to visualize the alignment of a corporate
lending financial portfolio to climate change scenarios based on
climate indicators (production and emission intensities) across key
climate relevant sectors of the 'PACTA' methodology (Paris Agreement Capital
Transition Assessment; <https://www.transitionmonitor.com/>).
Financial institutions use 'PACTA' to study how their capital
allocation decisions align with climate change mitigation goals.
Author: Monika Furdyna [aut, ctr, cre]
,
Mauro Lepore [aut, ctr] ,
Alex Axthelm [aut, ctr] ,
Rocky Mountain Institute [cph, fnd]
Maintainer: Monika Furdyna <monika.furdyna@gmail.com>
Diff between r2dii.plot versions 0.3.0 dated 2022-05-05 and 0.3.1 dated 2023-05-23
r2dii.plot-0.3.0/r2dii.plot/man/figures/logo.svg |only r2dii.plot-0.3.1/r2dii.plot/DESCRIPTION | 24 ++-- r2dii.plot-0.3.1/r2dii.plot/MD5 | 56 +++++----- r2dii.plot-0.3.1/r2dii.plot/NEWS.md | 11 + r2dii.plot-0.3.1/r2dii.plot/R/plot_emission_intensity.R | 6 - r2dii.plot-0.3.1/r2dii.plot/R/plot_techmix.R | 8 - r2dii.plot-0.3.1/r2dii.plot/R/plot_trajectory.R | 12 +- r2dii.plot-0.3.1/r2dii.plot/R/r2dii_colours.R | 10 - r2dii.plot-0.3.1/r2dii.plot/R/sda.R | 2 r2dii.plot-0.3.1/r2dii.plot/R/utils.R | 13 +- r2dii.plot-0.3.1/r2dii.plot/README.md | 54 +++++---- r2dii.plot-0.3.1/r2dii.plot/data/palette_colours.rda |only r2dii.plot-0.3.1/r2dii.plot/data/scenario_colours.rda |only r2dii.plot-0.3.1/r2dii.plot/data/sector_colours.rda |only r2dii.plot-0.3.1/r2dii.plot/data/technology_colours.rda |only r2dii.plot-0.3.1/r2dii.plot/man/figures/README-unnamed-chunk-2-1.png |binary r2dii.plot-0.3.1/r2dii.plot/man/figures/README-unnamed-chunk-3-1.png |binary r2dii.plot-0.3.1/r2dii.plot/man/figures/logo.png |only r2dii.plot-0.3.1/r2dii.plot/man/market_share.Rd | 1 r2dii.plot-0.3.1/r2dii.plot/man/r2dii.plot-package.Rd | 12 +- r2dii.plot-0.3.1/r2dii.plot/man/r2dii_colours.Rd | 15 +- r2dii.plot-0.3.1/r2dii.plot/man/sda.Rd | 5 r2dii.plot-0.3.1/r2dii.plot/tests/testthat/_snaps/plot_emission_intensity.md | 5 r2dii.plot-0.3.1/r2dii.plot/tests/testthat/_snaps/plot_techmix.md | 5 r2dii.plot-0.3.1/r2dii.plot/tests/testthat/_snaps/plot_trajectory.md | 5 r2dii.plot-0.3.1/r2dii.plot/tests/testthat/_snaps/sda.md | 27 ++-- r2dii.plot-0.3.1/r2dii.plot/tests/testthat/test-market_share.R | 6 - r2dii.plot-0.3.1/r2dii.plot/tests/testthat/test-plot_emission_intensity.R | 7 - r2dii.plot-0.3.1/r2dii.plot/tests/testthat/test-plot_techmix.R | 7 - r2dii.plot-0.3.1/r2dii.plot/tests/testthat/test-plot_trajectory.R | 11 + r2dii.plot-0.3.1/r2dii.plot/tests/testthat/test-qplot_emission_intensity.R | 2 r2dii.plot-0.3.1/r2dii.plot/tests/testthat/test-sda.R | 6 - 32 files changed, 169 insertions(+), 141 deletions(-)
Title: Easy Access to Model Information for Various Model Objects
Description: A tool to provide an easy, intuitive and consistent
access to information contained in various R models, like model
formulas, model terms, information about random effects, data that was
used to fit the model or data from response variables. 'insight'
mainly revolves around two types of functions: Functions that find
(the names of) information, starting with 'find_', and functions that
get the underlying data, starting with 'get_'. The package has a
consistent syntax and works with many different model objects, where
otherwise functions to access these information are missing.
Author: Daniel Luedecke [aut, cre] ,
Dominique Makowski [aut, ctb] ,
Indrajeet Patil [aut, ctb] ,
Philip Waggoner [aut, ctb] ,
Mattan S. Ben-Shachar [aut, ctb]
,
Brenton M. Wiernik [aut, ctb] ,
Vincent Arel-Bundock [aut, ctb]
,
Etienne Bacher [aut, ctb] ,
Ale [...truncated...]
Maintainer: Daniel Luedecke <d.luedecke@uke.de>
Diff between insight versions 0.19.1 dated 2023-03-18 and 0.19.2 dated 2023-05-23
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Title: Tools Inspired by 'Stata' to Manipulate Tabular Data
Description: A set of tools inspired by 'Stata' to explore data.frames ('summarize',
'tabulate', 'xtile', 'pctile', 'binscatter', elapsed quarters/month, lead/lag).
Author: Matthieu Gomez [aut, cre]
Maintainer: Matthieu Gomez <mg3901@columbia.edu>
Diff between statar versions 0.7.4 dated 2022-07-18 and 0.7.5 dated 2023-05-23
DESCRIPTION | 8 - MD5 | 25 ++-- NEWS.md |only R/fill_gap.R | 5 R/join.R | 10 - R/sum_up.R | 4 README.md | 5 build/vignette.rds |binary inst/doc/data-frames.html | 189 +++++++++++++++++++---------------- inst/doc/graph.html | 141 ++++++++++++++------------ inst/doc/panel-data.html | 242 ++++++++++++++++++++++++---------------------- inst/doc/vector.html | 174 +++++++++++++++++---------------- man/fill_gap.Rd | 4 man/stat_binmean.Rd | 20 ++- 14 files changed, 438 insertions(+), 389 deletions(-)
Title: Trajectories and Phylogenies Simulator
Description: Generates stochastic time series and genealogies associated with a population dynamics model. Times series are simulated using the Gillespie exact and approximate algorithms and a new algorithm we introduce that uses both approaches to optimize the time execution of the simulations. Genealogies are simulated from a trajectory using a backwards-in-time based approach. Methods are described in Danesh G et al (2022) <doi:10.1111/2041-210X.14038>.
Author: Gonche Danesh [aut, cre, cph],
Emma Saulnier [aut, cph],
Olivier Gascuel [aut, cph],
Marc Choisy [aut, cph, ths],
Samuel Alizon [aut, cph, ths]
Maintainer: Gonche Danesh <gonche.danesh@gmail.com>
Diff between TiPS versions 1.2.2 dated 2023-02-27 and 1.2.3 dated 2023-05-23
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Title: Dynamic Function-Oriented 'Make'-Like Declarative Pipelines
Description: Pipeline tools coordinate the pieces of computationally
demanding analysis projects.
The 'targets' package is a 'Make'-like pipeline tool for statistics and
data science in R. The package skips costly runtime for tasks
that are already up to date,
orchestrates the necessary computation with implicit parallel computing,
and abstracts files as R objects. If all the current output matches
the current upstream code and data, then the whole pipeline is up
to date, and the results are more trustworthy than otherwise.
The methodology in this package
borrows from GNU 'Make' (2015, ISBN:978-9881443519)
and 'drake' (2018, <doi:10.21105/joss.00550>).
Author: William Michael Landau [aut, cre]
,
Matthew T. Warkentin [ctb],
Mark Edmondson [ctb] ,
Samantha Oliver [rev] ,
Tristan Mahr [rev] ,
Eli Lilly and Company [cph]
Maintainer: William Michael Landau <will.landau@gmail.com>
Diff between targets versions 1.1.2 dated 2023-05-23 and 1.1.3 dated 2023-05-23
DESCRIPTION | 6 +++--- MD5 | 20 +++++++++++--------- NEWS.md | 4 ++++ R/class_runtime.R | 9 +++++++-- R/utils_time.R | 16 +++++++--------- build/partial.rdb |binary build/vignette.rds |binary tests/interactive/_targets.R |only tests/testthat/test-class_aws.R | 1 + tests/testthat/test-class_gcp.R | 1 + tests/testthat/test-class_runtime.R | 8 ++++++++ tests/testthat/test-utils_time.R |only 12 files changed, 42 insertions(+), 23 deletions(-)
Title: Working with the Neotoma Paleoecology Database
Description: Access and manipulation of data using the Neotoma Paleoecology Database.
<https://api.neotomadb.org/api-docs/>.
Author: Dominguez Vidana Socorro [aut]
,
Simon Goring [aut, cre]
Maintainer: Simon Goring <goring@wisc.edu>
Diff between neotoma2 versions 1.0.0 dated 2023-04-20 and 1.0.1 dated 2023-05-23
DESCRIPTION | 8 MD5 | 10 NEWS.md | 7 R/parseURL.R | 104 ++++++- README.md | 2 inst/doc/neotoma2-package.html | 563 ++++++++++++++++++++--------------------- 6 files changed, 385 insertions(+), 309 deletions(-)
Title: Create R Markdown Text for Results in the Style of the American
Psychological Association (APA)
Description: Create APA style text from analyses for use within R Markdown documents. Descriptive statistics, confidence intervals, and cell sizes are reported.
Author: David Stanley [aut, cre]
Maintainer: David Stanley <dstanley@uoguelph.ca>
Diff between apaText versions 0.1.1 dated 2018-04-16 and 0.1.7 dated 2023-05-23
DESCRIPTION | 13 - LICENSE | 2 MD5 | 24 ++- NAMESPACE | 8 + R/apaText.R | 39 ++--- R/apa_correlation.R |only R/apa_descriptive_statistics.R | 142 ++++++++++++------- R/apa_t_test.R |only R/apa_utility.R |only README.md |only man/apa.desc.Rd | 66 +++++--- man/apa.ind.t.test.Rd |only man/apa.r.Rd |only man/apa.r.compare.across.samples.Rd |only man/apa.r.compare.across.samples.from.descriptive.Rd |only man/apa.r.compare.within.sample.Rd |only man/apaText.Rd | 5 man/set.apa.default.options.Rd |only 18 files changed, 191 insertions(+), 108 deletions(-)
Title: Design and Evaluate Choice-Based Conjoint Survey Experiments
Description: Design and evaluate choice-based conjoint survey experiments in R. Generate survey designs, including randomized designs and Bayesian D-efficient designs as well as designs with "no choice" options and labeled designs. Conveniently inspect the design balance and overlap, and simulate choice data for a survey design either randomly or according to a multinomial or mixed logit utility model defined by user-provided prior parameters. Conduct power analyses on a survey design by estimating the same model multiple times using different subsets of the data to simulate different sample sizes. Choice simulation and model estimation are handled using the 'logitr' package, and Bayesian D-efficient designs are obtained using the 'idefix' package. For more details see Helveston (2023) <doi:10.18637/jss.v105.i10> and Traets et al (2020) <doi:10.18637/jss.v096.i03>.
Author: John Helveston [cre, aut, cph]
Maintainer: John Helveston <john.helveston@gmail.com>
Diff between cbcTools versions 0.3.0 dated 2023-05-09 and 0.3.2 dated 2023-05-23
DESCRIPTION | 8 +- MD5 | 20 +++---- NAMESPACE | 1 NEWS.md | 10 +++ R/input_checks.R | 25 ++++++++ R/profiles.R | 116 ++++++++++++++++++----------------------- README.md | 16 +++-- build/partial.rdb |binary man/cbc_profiles.Rd | 30 +--------- man/cbc_restrict.Rd |only tests/testthat/test_profiles.R | 47 ---------------- tests/testthat/test_restrict.R |only 12 files changed, 116 insertions(+), 157 deletions(-)
Title: Categorical Data
Description: This R-package contains examples from the book "Regression for Categorical Data", Tutz 2012, Cambridge University Press. The names of the examples refer to the chapter and the data set that is used.
Author: Gunther Schauberger, Gerhard Tutz
Maintainer: Gunther Schauberger <gunther.schauberger@tum.de>
Diff between catdata versions 1.2.2 dated 2020-02-07 and 1.2.3 dated 2023-05-23
DESCRIPTION | 10 +++---- MD5 | 46 ++++++++++++++++---------------- data/birth.rda |binary man/addiction.Rd | 6 ++-- man/aids.Rd | 2 - man/birth.Rd | 6 ++-- man/catdata-package.Rd | 2 - man/children.Rd | 4 +- man/dust.Rd | 6 ++-- man/encephalitis.Rd | 2 - man/foodstamp.Rd | 2 - man/glass.Rd | 70 ++++++++++++++++++++++++------------------------- man/heart.Rd | 12 ++++---- man/insolvency.Rd | 2 - man/knee.Rd | 10 +++---- man/kneecumulative.rd | 2 - man/kneesequential.rd | 2 - man/leukoplakia.Rd | 2 - man/medcare.Rd | 6 ++-- man/retinopathy.Rd | 4 +- man/teratology.Rd | 2 - man/teratology2.Rd | 2 - man/unemployment.Rd | 10 +++---- man/vaso.Rd | 2 - 24 files changed, 106 insertions(+), 106 deletions(-)
Title: Create Custom Plots for Viewing Genetic Association Results
Description: A collection of functions for visualizing,exploring and annotating genetic association results.Association results from multiple traits can be viewed simultaneously along with gene annotation, over the entire genome (Manhattan plot) or in the more detailed regional view.
Author: Thorhildur Juliusdottir [cph, aut, cre],
Andri Stefansson [aut]
Maintainer: Thorhildur Juliusdottir <totajuliusd@gmail.com>
Diff between topr versions 1.1.6 dated 2023-04-26 and 1.1.7 dated 2023-05-23
DESCRIPTION | 6 ++-- MD5 | 18 ++++++------- NEWS.md | 5 +++ R/exonplot.R | 62 ++++++++++++++++++++++++------------------------ R/manhattan.R | 16 ++++++------ R/setters_and_getters.R | 9 ++---- man/effectplot.Rd | 2 - man/locuszoom.Rd | 6 ++-- man/manhattan.Rd | 13 ++++++---- man/regionplot.Rd | 8 +++--- 10 files changed, 77 insertions(+), 68 deletions(-)
Title: RDF Library Bindings in R
Description: Provides methods to parse, query and serialize information
stored in the Resource Description Framework (RDF). RDF is described at <https://www.w3.org/TR/rdf-primer/>.
This package supports RDF by implementing an R interface to the Redland RDF C library,
described at <https://librdf.org/docs/api/index.html>. In brief, RDF provides a structured graph
consisting of Statements composed of Subject, Predicate, and Object Nodes.
Author: Matthew B. Jones [aut, cre],
Peter Slaughter [aut],
Jeroen Ooms [aut],
Carl Boettiger [aut],
Scott Chamberlain [aut],
David Beckett [cph],
University of Bristol [cph],
Regents of the University of California [cph]
Maintainer: Matthew B. Jones <jones@nceas.ucsb.edu>
Diff between redland versions 1.0.17-16.1 dated 2023-05-19 and 1.0.17-17 dated 2023-05-23
DESCRIPTION | 8 MD5 | 33 +- NEWS | 10 R/Statement.R | 10 R/mergeNamespace_roclet.R | 3 R/util.R | 2 README.md | 8 build/vignette.rds |binary inst/Makefile |only inst/WORDLIST | 4 inst/config.log |only inst/config.status |only inst/doc/redland_overview.Rmd | 4 inst/doc/redland_overview.html | 347 ++++++++++++++++++++++------ man/roclet_process.roclet_mergeNamespace.Rd | 4 tools/Makefile |only tools/NEWS |only tools/README |only tools/aclocal.m4 |only tools/config.log |only tools/config.status |only vignettes/redland_overview.Rmd | 4 22 files changed, 336 insertions(+), 101 deletions(-)
Title: DBI Package for the DuckDB Database Management System
Description: The DuckDB project is an embedded analytical data
management system with support for the Structured Query Language (SQL). This package includes all of
DuckDB and a R Database Interface (DBI) connector.
Author: Hannes Muehleisen [aut, cre] ,
Mark Raasveldt [aut] ,
Stichting DuckDB Foundation [cph],
Apache Software Foundation [cph],
PostgreSQL Global Development Group [cph],
The Regents of the University of California [cph],
Cameron Desrochers [cph],
Victor Z [...truncated...]
Maintainer: Hannes Muehleisen <hannes@cwi.nl>
Diff between duckdb versions 0.7.1-1 dated 2023-03-01 and 0.8.0 dated 2023-05-23
duckdb-0.7.1-1/duckdb/src/duckdb/extension/parquet/include/generated_column_reader.hpp |only duckdb-0.7.1-1/duckdb/src/duckdb/src/catalog/catalog_entry/scalar_macro_catalog_entry.cpp |only duckdb-0.7.1-1/duckdb/src/duckdb/src/common/types/column_data_allocator.cpp |only duckdb-0.7.1-1/duckdb/src/duckdb/src/common/types/column_data_collection.cpp |only duckdb-0.7.1-1/duckdb/src/duckdb/src/common/types/column_data_collection_segment.cpp |only duckdb-0.7.1-1/duckdb/src/duckdb/src/common/types/column_data_consumer.cpp |only duckdb-0.7.1-1/duckdb/src/duckdb/src/common/types/partitioned_column_data.cpp |only duckdb-0.7.1-1/duckdb/src/duckdb/src/common/types/row_data_collection.cpp |only duckdb-0.7.1-1/duckdb/src/duckdb/src/common/types/row_data_collection_scanner.cpp |only duckdb-0.7.1-1/duckdb/src/duckdb/src/common/types/row_layout.cpp |only duckdb-0.7.1-1/duckdb/src/duckdb/src/function/aggregate/algebraic |only duckdb-0.7.1-1/duckdb/src/duckdb/src/function/aggregate/algebraic_functions.cpp |only duckdb-0.7.1-1/duckdb/src/duckdb/src/function/aggregate/distributive/approx_count.cpp |only duckdb-0.7.1-1/duckdb/src/duckdb/src/function/aggregate/distributive/arg_min_max.cpp |only duckdb-0.7.1-1/duckdb/src/duckdb/src/function/aggregate/distributive/bitagg.cpp |only duckdb-0.7.1-1/duckdb/src/duckdb/src/function/aggregate/distributive/bool.cpp |only duckdb-0.7.1-1/duckdb/src/duckdb/src/function/aggregate/distributive/entropy.cpp |only duckdb-0.7.1-1/duckdb/src/duckdb/src/function/aggregate/distributive/kurtosis.cpp |only duckdb-0.7.1-1/duckdb/src/duckdb/src/function/aggregate/distributive/minmax.cpp |only duckdb-0.7.1-1/duckdb/src/duckdb/src/function/aggregate/distributive/product.cpp |only duckdb-0.7.1-1/duckdb/src/duckdb/src/function/aggregate/distributive/skew.cpp |only duckdb-0.7.1-1/duckdb/src/duckdb/src/function/aggregate/distributive/string_agg.cpp |only duckdb-0.7.1-1/duckdb/src/duckdb/src/function/aggregate/distributive/sum.cpp |only duckdb-0.7.1-1/duckdb/src/duckdb/src/function/aggregate/holistic |only duckdb-0.7.1-1/duckdb/src/duckdb/src/function/aggregate/holistic_functions.cpp |only duckdb-0.7.1-1/duckdb/src/duckdb/src/function/aggregate/nested |only duckdb-0.7.1-1/duckdb/src/duckdb/src/function/aggregate/nested_functions.cpp |only duckdb-0.7.1-1/duckdb/src/duckdb/src/function/aggregate/regression |only duckdb-0.7.1-1/duckdb/src/duckdb/src/function/aggregate/regression_functions.cpp |only duckdb-0.7.1-1/duckdb/src/duckdb/src/function/scalar/blob |only duckdb-0.7.1-1/duckdb/src/duckdb/src/function/scalar/date |only duckdb-0.7.1-1/duckdb/src/duckdb/src/function/scalar/date_functions.cpp |only duckdb-0.7.1-1/duckdb/src/duckdb/src/function/scalar/enum |only duckdb-0.7.1-1/duckdb/src/duckdb/src/function/scalar/enum_functions.cpp |only duckdb-0.7.1-1/duckdb/src/duckdb/src/function/scalar/generic/alias.cpp |only duckdb-0.7.1-1/duckdb/src/duckdb/src/function/scalar/generic/current_setting.cpp |only duckdb-0.7.1-1/duckdb/src/duckdb/src/function/scalar/generic/hash.cpp |only duckdb-0.7.1-1/duckdb/src/duckdb/src/function/scalar/generic/least.cpp |only duckdb-0.7.1-1/duckdb/src/duckdb/src/function/scalar/generic/stats.cpp |only duckdb-0.7.1-1/duckdb/src/duckdb/src/function/scalar/generic/typeof.cpp |only duckdb-0.7.1-1/duckdb/src/duckdb/src/function/scalar/list/array_slice.cpp |only duckdb-0.7.1-1/duckdb/src/duckdb/src/function/scalar/list/flatten.cpp |only duckdb-0.7.1-1/duckdb/src/duckdb/src/function/scalar/list/list_aggregates.cpp |only duckdb-0.7.1-1/duckdb/src/duckdb/src/function/scalar/list/list_lambdas.cpp |only duckdb-0.7.1-1/duckdb/src/duckdb/src/function/scalar/list/list_sort.cpp |only duckdb-0.7.1-1/duckdb/src/duckdb/src/function/scalar/list/list_value.cpp |only duckdb-0.7.1-1/duckdb/src/duckdb/src/function/scalar/list/range.cpp |only duckdb-0.7.1-1/duckdb/src/duckdb/src/function/scalar/map |only duckdb-0.7.1-1/duckdb/src/duckdb/src/function/scalar/math |only duckdb-0.7.1-1/duckdb/src/duckdb/src/function/scalar/math_functions.cpp |only duckdb-0.7.1-1/duckdb/src/duckdb/src/function/scalar/operators/bitwise.cpp |only duckdb-0.7.1-1/duckdb/src/duckdb/src/function/scalar/string/ascii.cpp |only duckdb-0.7.1-1/duckdb/src/duckdb/src/function/scalar/string/bar.cpp |only duckdb-0.7.1-1/duckdb/src/duckdb/src/function/scalar/string/chr.cpp |only duckdb-0.7.1-1/duckdb/src/duckdb/src/function/scalar/string/instr.cpp |only duckdb-0.7.1-1/duckdb/src/duckdb/src/function/scalar/string/jaccard.cpp |only duckdb-0.7.1-1/duckdb/src/duckdb/src/function/scalar/string/jaro_winkler.cpp |only duckdb-0.7.1-1/duckdb/src/duckdb/src/function/scalar/string/left_right.cpp |only duckdb-0.7.1-1/duckdb/src/duckdb/src/function/scalar/string/levenshtein.cpp |only duckdb-0.7.1-1/duckdb/src/duckdb/src/function/scalar/string/md5.cpp |only duckdb-0.7.1-1/duckdb/src/duckdb/src/function/scalar/string/mismatches.cpp |only duckdb-0.7.1-1/duckdb/src/duckdb/src/function/scalar/string/pad.cpp |only duckdb-0.7.1-1/duckdb/src/duckdb/src/function/scalar/string/printf.cpp |only duckdb-0.7.1-1/duckdb/src/duckdb/src/function/scalar/string/repeat.cpp |only duckdb-0.7.1-1/duckdb/src/duckdb/src/function/scalar/string/replace.cpp |only duckdb-0.7.1-1/duckdb/src/duckdb/src/function/scalar/string/reverse.cpp |only duckdb-0.7.1-1/duckdb/src/duckdb/src/function/scalar/string/starts_with.cpp |only duckdb-0.7.1-1/duckdb/src/duckdb/src/function/scalar/string/string_split.cpp |only duckdb-0.7.1-1/duckdb/src/duckdb/src/function/scalar/string/translate.cpp |only duckdb-0.7.1-1/duckdb/src/duckdb/src/function/scalar/string/trim.cpp |only duckdb-0.7.1-1/duckdb/src/duckdb/src/function/scalar/struct/struct_insert.cpp |only duckdb-0.7.1-1/duckdb/src/duckdb/src/function/scalar/struct/struct_pack.cpp |only duckdb-0.7.1-1/duckdb/src/duckdb/src/function/scalar/system/system_functions.cpp |only duckdb-0.7.1-1/duckdb/src/duckdb/src/function/scalar/trigonometrics_functions.cpp |only duckdb-0.7.1-1/duckdb/src/duckdb/src/function/scalar/union |only duckdb-0.7.1-1/duckdb/src/duckdb/src/include/duckdb/common/http_stats.hpp |only duckdb-0.7.1-1/duckdb/src/duckdb/src/include/duckdb/common/single_thread_ptr.hpp |only duckdb-0.7.1-1/duckdb/src/duckdb/src/include/duckdb/common/types/column_data_allocator.hpp |only duckdb-0.7.1-1/duckdb/src/duckdb/src/include/duckdb/common/types/column_data_collection.hpp |only duckdb-0.7.1-1/duckdb/src/duckdb/src/include/duckdb/common/types/column_data_collection_iterators.hpp |only duckdb-0.7.1-1/duckdb/src/duckdb/src/include/duckdb/common/types/column_data_collection_segment.hpp |only duckdb-0.7.1-1/duckdb/src/duckdb/src/include/duckdb/common/types/column_data_consumer.hpp |only duckdb-0.7.1-1/duckdb/src/duckdb/src/include/duckdb/common/types/column_data_scan_states.hpp |only duckdb-0.7.1-1/duckdb/src/duckdb/src/include/duckdb/common/types/partitioned_column_data.hpp |only duckdb-0.7.1-1/duckdb/src/duckdb/src/include/duckdb/common/types/row_data_collection.hpp |only duckdb-0.7.1-1/duckdb/src/duckdb/src/include/duckdb/common/types/row_data_collection_scanner.hpp |only duckdb-0.7.1-1/duckdb/src/duckdb/src/include/duckdb/common/types/row_layout.hpp |only duckdb-0.7.1-1/duckdb/src/duckdb/src/include/duckdb/function/aggregate/algebraic |only duckdb-0.7.1-1/duckdb/src/duckdb/src/include/duckdb/function/aggregate/algebraic_functions.hpp |only duckdb-0.7.1-1/duckdb/src/duckdb/src/include/duckdb/function/aggregate/holistic_functions.hpp |only duckdb-0.7.1-1/duckdb/src/duckdb/src/include/duckdb/function/aggregate/nested_functions.hpp |only duckdb-0.7.1-1/duckdb/src/duckdb/src/include/duckdb/function/aggregate/regression |only duckdb-0.7.1-1/duckdb/src/duckdb/src/include/duckdb/function/aggregate/regression_functions.hpp |only duckdb-0.7.1-1/duckdb/src/duckdb/src/include/duckdb/function/aggregate/sum_helpers.hpp |only duckdb-0.7.1-1/duckdb/src/duckdb/src/include/duckdb/function/scalar/bit_functions.hpp |only duckdb-0.7.1-1/duckdb/src/duckdb/src/include/duckdb/function/scalar/blob_functions.hpp |only duckdb-0.7.1-1/duckdb/src/duckdb/src/include/duckdb/function/scalar/date_functions.hpp |only duckdb-0.7.1-1/duckdb/src/duckdb/src/include/duckdb/function/scalar/enum_functions.hpp |only duckdb-0.7.1-1/duckdb/src/duckdb/src/include/duckdb/function/scalar/math_functions.hpp |only duckdb-0.7.1-1/duckdb/src/duckdb/src/include/duckdb/function/scalar/strftime.hpp |only duckdb-0.7.1-1/duckdb/src/duckdb/src/include/duckdb/function/scalar/trigonometric_functions.hpp |only duckdb-0.7.1-1/duckdb/src/duckdb/src/include/duckdb/function/scalar/uuid_functions.hpp |only duckdb-0.7.1-1/duckdb/src/duckdb/src/include/duckdb/main/loadable_extension.hpp |only duckdb-0.7.1-1/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/alter_function_info.hpp |only duckdb-0.7.1-1/duckdb/src/duckdb/src/include/duckdb/storage/statistics/list_statistics.hpp |only duckdb-0.7.1-1/duckdb/src/duckdb/src/include/duckdb/storage/statistics/numeric_statistics.hpp |only duckdb-0.7.1-1/duckdb/src/duckdb/src/include/duckdb/storage/statistics/string_statistics.hpp |only duckdb-0.7.1-1/duckdb/src/duckdb/src/include/duckdb/storage/statistics/struct_statistics.hpp |only duckdb-0.7.1-1/duckdb/src/duckdb/src/include/duckdb/storage/statistics/validity_statistics.hpp |only duckdb-0.7.1-1/duckdb/src/duckdb/src/parser/parsed_data/alter_function_info.cpp |only duckdb-0.7.1-1/duckdb/src/duckdb/src/storage/statistics/list_statistics.cpp |only duckdb-0.7.1-1/duckdb/src/duckdb/src/storage/statistics/numeric_statistics.cpp |only duckdb-0.7.1-1/duckdb/src/duckdb/src/storage/statistics/string_statistics.cpp |only duckdb-0.7.1-1/duckdb/src/duckdb/src/storage/statistics/struct_statistics.cpp |only duckdb-0.7.1-1/duckdb/src/duckdb/src/storage/statistics/validity_statistics.cpp |only duckdb-0.7.1-1/duckdb/src/duckdb/src/storage/table/segment_tree.cpp |only duckdb-0.7.1-1/duckdb/src/duckdb/ub_src_function_aggregate_algebraic.cpp |only duckdb-0.7.1-1/duckdb/src/duckdb/ub_src_function_aggregate_holistic.cpp |only duckdb-0.7.1-1/duckdb/src/duckdb/ub_src_function_aggregate_nested.cpp |only duckdb-0.7.1-1/duckdb/src/duckdb/ub_src_function_aggregate_regression.cpp |only duckdb-0.7.1-1/duckdb/src/duckdb/ub_src_function_scalar_blob.cpp |only duckdb-0.7.1-1/duckdb/src/duckdb/ub_src_function_scalar_date.cpp |only duckdb-0.7.1-1/duckdb/src/duckdb/ub_src_function_scalar_enum.cpp |only duckdb-0.7.1-1/duckdb/src/duckdb/ub_src_function_scalar_map.cpp |only duckdb-0.7.1-1/duckdb/src/duckdb/ub_src_function_scalar_math.cpp |only duckdb-0.7.1-1/duckdb/src/duckdb/ub_src_function_scalar_union.cpp |only duckdb-0.8.0/duckdb/DESCRIPTION | 6 duckdb-0.8.0/duckdb/MD5 | 3487 duckdb-0.8.0/duckdb/R/backend-dbplyr__duckdb_connection.R | 2 duckdb-0.8.0/duckdb/R/cpp11.R | 20 duckdb-0.8.0/duckdb/R/register.R | 1 duckdb-0.8.0/duckdb/R/relational.R | 75 duckdb-0.8.0/duckdb/R/sql.R | 20 duckdb-0.8.0/duckdb/README.md | 3 duckdb-0.8.0/duckdb/inst/include/cpp11/as.hpp | 325 duckdb-0.8.0/duckdb/inst/include/cpp11/external_pointer.hpp | 10 duckdb-0.8.0/duckdb/man/duckdb_register.Rd | 1 duckdb-0.8.0/duckdb/src/Makevars | 2 duckdb-0.8.0/duckdb/src/Makevars.win | 4 duckdb-0.8.0/duckdb/src/connection.cpp | 2 duckdb-0.8.0/duckdb/src/cpp11.cpp | 40 duckdb-0.8.0/duckdb/src/database.cpp | 4 duckdb-0.8.0/duckdb/src/duckdb/extension/parquet/column_reader.cpp | 271 duckdb-0.8.0/duckdb/src/duckdb/extension/parquet/column_writer.cpp | 218 duckdb-0.8.0/duckdb/src/duckdb/extension/parquet/include/boolean_column_reader.hpp | 8 duckdb-0.8.0/duckdb/src/duckdb/extension/parquet/include/callback_column_reader.hpp | 3 duckdb-0.8.0/duckdb/src/duckdb/extension/parquet/include/cast_column_reader.hpp | 11 duckdb-0.8.0/duckdb/src/duckdb/extension/parquet/include/column_reader.hpp | 36 duckdb-0.8.0/duckdb/src/duckdb/extension/parquet/include/column_writer.hpp | 15 duckdb-0.8.0/duckdb/src/duckdb/extension/parquet/include/decode_utils.hpp | 9 duckdb-0.8.0/duckdb/src/duckdb/extension/parquet/include/list_column_reader.hpp | 10 duckdb-0.8.0/duckdb/src/duckdb/extension/parquet/include/parquet_dbp_decoder.hpp | 6 duckdb-0.8.0/duckdb/src/duckdb/extension/parquet/include/parquet_decimal_utils.hpp | 6 duckdb-0.8.0/duckdb/src/duckdb/extension/parquet/include/parquet_file_metadata_cache.hpp | 4 duckdb-0.8.0/duckdb/src/duckdb/extension/parquet/include/parquet_metadata.hpp | 1 duckdb-0.8.0/duckdb/src/duckdb/extension/parquet/include/parquet_reader.hpp | 80 duckdb-0.8.0/duckdb/src/duckdb/extension/parquet/include/parquet_statistics.hpp | 4 duckdb-0.8.0/duckdb/src/duckdb/extension/parquet/include/parquet_support.hpp | 19 duckdb-0.8.0/duckdb/src/duckdb/extension/parquet/include/parquet_timestamp.hpp | 3 duckdb-0.8.0/duckdb/src/duckdb/extension/parquet/include/parquet_writer.hpp | 17 duckdb-0.8.0/duckdb/src/duckdb/extension/parquet/include/row_number_column_reader.hpp | 9 duckdb-0.8.0/duckdb/src/duckdb/extension/parquet/include/string_column_reader.hpp | 6 duckdb-0.8.0/duckdb/src/duckdb/extension/parquet/include/struct_column_reader.hpp | 10 duckdb-0.8.0/duckdb/src/duckdb/extension/parquet/include/templated_column_reader.hpp | 3 duckdb-0.8.0/duckdb/src/duckdb/extension/parquet/include/thrift_tools.hpp | 8 duckdb-0.8.0/duckdb/src/duckdb/extension/parquet/include/zstd_file_system.hpp | 4 duckdb-0.8.0/duckdb/src/duckdb/extension/parquet/parquet-extension.cpp | 455 duckdb-0.8.0/duckdb/src/duckdb/extension/parquet/parquet_metadata.cpp | 96 duckdb-0.8.0/duckdb/src/duckdb/extension/parquet/parquet_reader.cpp | 404 duckdb-0.8.0/duckdb/src/duckdb/extension/parquet/parquet_statistics.cpp | 101 duckdb-0.8.0/duckdb/src/duckdb/extension/parquet/parquet_timestamp.cpp | 22 duckdb-0.8.0/duckdb/src/duckdb/extension/parquet/parquet_writer.cpp | 40 duckdb-0.8.0/duckdb/src/duckdb/extension/parquet/zstd_file_system.cpp | 8 duckdb-0.8.0/duckdb/src/duckdb/src/catalog/catalog.cpp | 353 duckdb-0.8.0/duckdb/src/duckdb/src/catalog/catalog_entry.cpp | 37 duckdb-0.8.0/duckdb/src/duckdb/src/catalog/catalog_entry/copy_function_catalog_entry.cpp | 6 duckdb-0.8.0/duckdb/src/duckdb/src/catalog/catalog_entry/duck_index_entry.cpp | 8 duckdb-0.8.0/duckdb/src/duckdb/src/catalog/catalog_entry/duck_schema_entry.cpp | 192 duckdb-0.8.0/duckdb/src/duckdb/src/catalog/catalog_entry/duck_table_entry.cpp | 229 duckdb-0.8.0/duckdb/src/duckdb/src/catalog/catalog_entry/index_catalog_entry.cpp | 16 duckdb-0.8.0/duckdb/src/duckdb/src/catalog/catalog_entry/macro_catalog_entry.cpp |only duckdb-0.8.0/duckdb/src/duckdb/src/catalog/catalog_entry/pragma_function_catalog_entry.cpp | 7 duckdb-0.8.0/duckdb/src/duckdb/src/catalog/catalog_entry/scalar_function_catalog_entry.cpp | 23 duckdb-0.8.0/duckdb/src/duckdb/src/catalog/catalog_entry/schema_catalog_entry.cpp | 18 duckdb-0.8.0/duckdb/src/duckdb/src/catalog/catalog_entry/sequence_catalog_entry.cpp | 18 duckdb-0.8.0/duckdb/src/duckdb/src/catalog/catalog_entry/table_catalog_entry.cpp | 50 duckdb-0.8.0/duckdb/src/duckdb/src/catalog/catalog_entry/table_function_catalog_entry.cpp | 28 duckdb-0.8.0/duckdb/src/duckdb/src/catalog/catalog_entry/type_catalog_entry.cpp | 26 duckdb-0.8.0/duckdb/src/duckdb/src/catalog/catalog_entry/view_catalog_entry.cpp | 54 duckdb-0.8.0/duckdb/src/duckdb/src/catalog/catalog_search_path.cpp | 9 duckdb-0.8.0/duckdb/src/duckdb/src/catalog/catalog_set.cpp | 266 duckdb-0.8.0/duckdb/src/duckdb/src/catalog/catalog_transaction.cpp | 6 duckdb-0.8.0/duckdb/src/duckdb/src/catalog/default/default_functions.cpp | 29 duckdb-0.8.0/duckdb/src/duckdb/src/catalog/default/default_schemas.cpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/catalog/default/default_types.cpp | 8 duckdb-0.8.0/duckdb/src/duckdb/src/catalog/default/default_views.cpp | 10 duckdb-0.8.0/duckdb/src/duckdb/src/catalog/dependency_list.cpp | 17 duckdb-0.8.0/duckdb/src/duckdb/src/catalog/dependency_manager.cpp | 97 duckdb-0.8.0/duckdb/src/duckdb/src/catalog/duck_catalog.cpp | 90 duckdb-0.8.0/duckdb/src/duckdb/src/catalog/similar_catalog_entry.cpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/common/adbc |only duckdb-0.8.0/duckdb/src/duckdb/src/common/allocator.cpp | 4 duckdb-0.8.0/duckdb/src/duckdb/src/common/arrow/arrow_appender.cpp | 228 duckdb-0.8.0/duckdb/src/duckdb/src/common/arrow/arrow_converter.cpp | 55 duckdb-0.8.0/duckdb/src/duckdb/src/common/arrow/arrow_wrapper.cpp | 24 duckdb-0.8.0/duckdb/src/duckdb/src/common/box_renderer.cpp | 138 duckdb-0.8.0/duckdb/src/duckdb/src/common/compressed_file_system.cpp | 19 duckdb-0.8.0/duckdb/src/duckdb/src/common/constants.cpp | 12 duckdb-0.8.0/duckdb/src/duckdb/src/common/enum_util.cpp |only duckdb-0.8.0/duckdb/src/duckdb/src/common/enums/date_part_specifier.cpp |only duckdb-0.8.0/duckdb/src/duckdb/src/common/enums/expression_type.cpp | 168 duckdb-0.8.0/duckdb/src/duckdb/src/common/enums/join_type.cpp | 30 duckdb-0.8.0/duckdb/src/duckdb/src/common/enums/logical_operator_type.cpp | 4 duckdb-0.8.0/duckdb/src/duckdb/src/common/enums/physical_operator_type.cpp | 8 duckdb-0.8.0/duckdb/src/duckdb/src/common/enums/statement_type.cpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/common/exception.cpp | 39 duckdb-0.8.0/duckdb/src/duckdb/src/common/exception_format_value.cpp | 16 duckdb-0.8.0/duckdb/src/duckdb/src/common/field_writer.cpp | 3 duckdb-0.8.0/duckdb/src/duckdb/src/common/file_buffer.cpp | 8 duckdb-0.8.0/duckdb/src/duckdb/src/common/file_system.cpp | 157 duckdb-0.8.0/duckdb/src/duckdb/src/common/filename_pattern.cpp |only duckdb-0.8.0/duckdb/src/duckdb/src/common/gzip_file_system.cpp | 74 duckdb-0.8.0/duckdb/src/duckdb/src/common/hive_partitioning.cpp | 169 duckdb-0.8.0/duckdb/src/duckdb/src/common/local_file_system.cpp | 111 duckdb-0.8.0/duckdb/src/duckdb/src/common/multi_file_reader.cpp |only duckdb-0.8.0/duckdb/src/duckdb/src/common/operator/cast_operators.cpp | 51 duckdb-0.8.0/duckdb/src/duckdb/src/common/pipe_file_system.cpp | 3 duckdb-0.8.0/duckdb/src/duckdb/src/common/preserved_error.cpp | 12 duckdb-0.8.0/duckdb/src/duckdb/src/common/progress_bar/progress_bar.cpp | 9 duckdb-0.8.0/duckdb/src/duckdb/src/common/radix_partitioning.cpp | 464 duckdb-0.8.0/duckdb/src/duckdb/src/common/random_engine.cpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/common/re2_regex.cpp | 8 duckdb-0.8.0/duckdb/src/duckdb/src/common/row_operations/row_aggregate.cpp | 39 duckdb-0.8.0/duckdb/src/duckdb/src/common/row_operations/row_external.cpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/common/row_operations/row_gather.cpp | 12 duckdb-0.8.0/duckdb/src/duckdb/src/common/row_operations/row_heap_scatter.cpp | 4 duckdb-0.8.0/duckdb/src/duckdb/src/common/row_operations/row_match.cpp | 139 duckdb-0.8.0/duckdb/src/duckdb/src/common/row_operations/row_scatter.cpp | 12 duckdb-0.8.0/duckdb/src/duckdb/src/common/serializer.cpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/common/serializer/binary_deserializer.cpp |only duckdb-0.8.0/duckdb/src/duckdb/src/common/serializer/binary_serializer.cpp |only duckdb-0.8.0/duckdb/src/duckdb/src/common/serializer/buffered_deserializer.cpp | 4 duckdb-0.8.0/duckdb/src/duckdb/src/common/serializer/buffered_file_reader.cpp | 24 duckdb-0.8.0/duckdb/src/duckdb/src/common/serializer/buffered_file_writer.cpp | 6 duckdb-0.8.0/duckdb/src/duckdb/src/common/serializer/buffered_serializer.cpp | 7 duckdb-0.8.0/duckdb/src/duckdb/src/common/sort/comparators.cpp | 19 duckdb-0.8.0/duckdb/src/duckdb/src/common/sort/merge_sorter.cpp | 6 duckdb-0.8.0/duckdb/src/duckdb/src/common/sort/partition_state.cpp |only duckdb-0.8.0/duckdb/src/duckdb/src/common/sort/radix_sort.cpp | 10 duckdb-0.8.0/duckdb/src/duckdb/src/common/sort/sort_state.cpp | 37 duckdb-0.8.0/duckdb/src/duckdb/src/common/sort/sorted_block.cpp | 42 duckdb-0.8.0/duckdb/src/duckdb/src/common/string_util.cpp | 61 duckdb-0.8.0/duckdb/src/duckdb/src/common/tree_renderer.cpp | 16 duckdb-0.8.0/duckdb/src/duckdb/src/common/types.cpp | 501 duckdb-0.8.0/duckdb/src/duckdb/src/common/types/batched_data_collection.cpp | 9 duckdb-0.8.0/duckdb/src/duckdb/src/common/types/bit.cpp | 281 duckdb-0.8.0/duckdb/src/duckdb/src/common/types/blob.cpp | 20 duckdb-0.8.0/duckdb/src/duckdb/src/common/types/chunk_collection.cpp | 8 duckdb-0.8.0/duckdb/src/duckdb/src/common/types/column |only duckdb-0.8.0/duckdb/src/duckdb/src/common/types/conflict_manager.cpp | 9 duckdb-0.8.0/duckdb/src/duckdb/src/common/types/data_chunk.cpp | 6 duckdb-0.8.0/duckdb/src/duckdb/src/common/types/date.cpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/common/types/decimal.cpp | 4 duckdb-0.8.0/duckdb/src/duckdb/src/common/types/hash.cpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/common/types/hyperloglog.cpp | 6 duckdb-0.8.0/duckdb/src/duckdb/src/common/types/interval.cpp | 41 duckdb-0.8.0/duckdb/src/duckdb/src/common/types/list_segment.cpp |only duckdb-0.8.0/duckdb/src/duckdb/src/common/types/row |only duckdb-0.8.0/duckdb/src/duckdb/src/common/types/selection_vector.cpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/common/types/string_heap.cpp | 6 duckdb-0.8.0/duckdb/src/duckdb/src/common/types/string_type.cpp | 6 duckdb-0.8.0/duckdb/src/duckdb/src/common/types/time.cpp | 15 duckdb-0.8.0/duckdb/src/duckdb/src/common/types/timestamp.cpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/common/types/validity_mask.cpp | 31 duckdb-0.8.0/duckdb/src/duckdb/src/common/types/value.cpp | 487 duckdb-0.8.0/duckdb/src/duckdb/src/common/types/vector.cpp | 541 duckdb-0.8.0/duckdb/src/duckdb/src/common/types/vector_buffer.cpp | 20 duckdb-0.8.0/duckdb/src/duckdb/src/common/types/vector_cache.cpp | 18 duckdb-0.8.0/duckdb/src/duckdb/src/common/value_operations/comparison_operations.cpp | 36 duckdb-0.8.0/duckdb/src/duckdb/src/common/vector_operations/comparison_operators.cpp | 20 duckdb-0.8.0/duckdb/src/duckdb/src/common/vector_operations/is_distinct_from.cpp | 25 duckdb-0.8.0/duckdb/src/duckdb/src/common/vector_operations/vector_cast.cpp | 3 duckdb-0.8.0/duckdb/src/duckdb/src/common/vector_operations/vector_copy.cpp | 25 duckdb-0.8.0/duckdb/src/duckdb/src/common/virtual_file_system.cpp | 6 duckdb-0.8.0/duckdb/src/duckdb/src/common/windows_util.cpp | 4 duckdb-0.8.0/duckdb/src/duckdb/src/core_functions |only duckdb-0.8.0/duckdb/src/duckdb/src/execution/adaptive_filter.cpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/execution/aggregate_hashtable.cpp | 678 duckdb-0.8.0/duckdb/src/duckdb/src/execution/column_binding_resolver.cpp | 38 duckdb-0.8.0/duckdb/src/duckdb/src/execution/expression_executor.cpp | 9 duckdb-0.8.0/duckdb/src/duckdb/src/execution/expression_executor/execute_between.cpp | 5 duckdb-0.8.0/duckdb/src/duckdb/src/execution/expression_executor/execute_case.cpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/execution/expression_executor/execute_cast.cpp | 5 duckdb-0.8.0/duckdb/src/duckdb/src/execution/expression_executor/execute_comparison.cpp | 6 duckdb-0.8.0/duckdb/src/duckdb/src/execution/expression_executor/execute_conjunction.cpp | 12 duckdb-0.8.0/duckdb/src/duckdb/src/execution/expression_executor/execute_constant.cpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/execution/expression_executor/execute_function.cpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/execution/expression_executor/execute_operator.cpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/execution/expression_executor/execute_parameter.cpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/execution/expression_executor/execute_reference.cpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/execution/expression_executor_state.cpp | 7 duckdb-0.8.0/duckdb/src/duckdb/src/execution/index/art/art.cpp | 604 duckdb-0.8.0/duckdb/src/duckdb/src/execution/index/art/art_key.cpp | 58 duckdb-0.8.0/duckdb/src/duckdb/src/execution/index/art/fixed_size_allocator.cpp |only duckdb-0.8.0/duckdb/src/duckdb/src/execution/index/art/iterator.cpp | 267 duckdb-0.8.0/duckdb/src/duckdb/src/execution/index/art/leaf.cpp | 484 duckdb-0.8.0/duckdb/src/duckdb/src/execution/index/art/leaf_segment.cpp |only duckdb-0.8.0/duckdb/src/duckdb/src/execution/index/art/node.cpp | 827 duckdb-0.8.0/duckdb/src/duckdb/src/execution/index/art/node16.cpp | 296 duckdb-0.8.0/duckdb/src/duckdb/src/execution/index/art/node256.cpp | 196 duckdb-0.8.0/duckdb/src/duckdb/src/execution/index/art/node4.cpp | 283 duckdb-0.8.0/duckdb/src/duckdb/src/execution/index/art/node48.cpp | 280 duckdb-0.8.0/duckdb/src/duckdb/src/execution/index/art/prefix.cpp | 532 duckdb-0.8.0/duckdb/src/duckdb/src/execution/index/art/prefix_segment.cpp |only duckdb-0.8.0/duckdb/src/duckdb/src/execution/index/art/swizzleable_pointer.cpp | 95 duckdb-0.8.0/duckdb/src/duckdb/src/execution/join_hashtable.cpp | 550 duckdb-0.8.0/duckdb/src/duckdb/src/execution/operator/aggregate/aggregate_object.cpp | 15 duckdb-0.8.0/duckdb/src/duckdb/src/execution/operator/aggregate/distinct_aggregate_data.cpp | 26 duckdb-0.8.0/duckdb/src/duckdb/src/execution/operator/aggregate/grouped_aggregate_data.cpp | 8 duckdb-0.8.0/duckdb/src/duckdb/src/execution/operator/aggregate/physical_hash_aggregate.cpp | 186 duckdb-0.8.0/duckdb/src/duckdb/src/execution/operator/aggregate/physical_perfecthash_aggregate.cpp | 71 duckdb-0.8.0/duckdb/src/duckdb/src/execution/operator/aggregate/physical_streaming_window.cpp | 22 duckdb-0.8.0/duckdb/src/duckdb/src/execution/operator/aggregate/physical_ungrouped_aggregate.cpp | 139 duckdb-0.8.0/duckdb/src/duckdb/src/execution/operator/aggregate/physical_window.cpp | 1066 duckdb-0.8.0/duckdb/src/duckdb/src/execution/operator/filter/physical_filter.cpp | 8 duckdb-0.8.0/duckdb/src/duckdb/src/execution/operator/helper/physical_batch_collector.cpp | 24 duckdb-0.8.0/duckdb/src/duckdb/src/execution/operator/helper/physical_execute.cpp | 11 duckdb-0.8.0/duckdb/src/duckdb/src/execution/operator/helper/physical_explain_analyze.cpp | 31 duckdb-0.8.0/duckdb/src/duckdb/src/execution/operator/helper/physical_limit.cpp | 41 duckdb-0.8.0/duckdb/src/duckdb/src/execution/operator/helper/physical_limit_percent.cpp | 42 duckdb-0.8.0/duckdb/src/duckdb/src/execution/operator/helper/physical_load.cpp | 5 duckdb-0.8.0/duckdb/src/duckdb/src/execution/operator/helper/physical_materialized_collector.cpp | 30 duckdb-0.8.0/duckdb/src/duckdb/src/execution/operator/helper/physical_pragma.cpp | 6 duckdb-0.8.0/duckdb/src/duckdb/src/execution/operator/helper/physical_prepare.cpp | 6 duckdb-0.8.0/duckdb/src/duckdb/src/execution/operator/helper/physical_reservoir_sample.cpp | 26 duckdb-0.8.0/duckdb/src/duckdb/src/execution/operator/helper/physical_reset.cpp | 7 duckdb-0.8.0/duckdb/src/duckdb/src/execution/operator/helper/physical_result_collector.cpp | 22 duckdb-0.8.0/duckdb/src/duckdb/src/execution/operator/helper/physical_set.cpp | 13 duckdb-0.8.0/duckdb/src/duckdb/src/execution/operator/helper/physical_streaming_limit.cpp | 12 duckdb-0.8.0/duckdb/src/duckdb/src/execution/operator/helper/physical_streaming_sample.cpp | 9 duckdb-0.8.0/duckdb/src/duckdb/src/execution/operator/helper/physical_transaction.cpp | 6 duckdb-0.8.0/duckdb/src/duckdb/src/execution/operator/helper/physical_vacuum.cpp | 36 duckdb-0.8.0/duckdb/src/duckdb/src/execution/operator/join/outer_join_marker.cpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/execution/operator/join/perfect_hash_join_executor.cpp | 61 duckdb-0.8.0/duckdb/src/duckdb/src/execution/operator/join/physical_asof_join.cpp |only duckdb-0.8.0/duckdb/src/duckdb/src/execution/operator/join/physical_blockwise_nl_join.cpp | 128 duckdb-0.8.0/duckdb/src/duckdb/src/execution/operator/join/physical_comparison_join.cpp | 3 duckdb-0.8.0/duckdb/src/duckdb/src/execution/operator/join/physical_cross_product.cpp | 19 duckdb-0.8.0/duckdb/src/duckdb/src/execution/operator/join/physical_delim_join.cpp | 43 duckdb-0.8.0/duckdb/src/duckdb/src/execution/operator/join/physical_hash_join.cpp | 389 duckdb-0.8.0/duckdb/src/duckdb/src/execution/operator/join/physical_iejoin.cpp | 97 duckdb-0.8.0/duckdb/src/duckdb/src/execution/operator/join/physical_index_join.cpp | 56 duckdb-0.8.0/duckdb/src/duckdb/src/execution/operator/join/physical_join.cpp | 29 duckdb-0.8.0/duckdb/src/duckdb/src/execution/operator/join/physical_nested_loop_join.cpp | 60 duckdb-0.8.0/duckdb/src/duckdb/src/execution/operator/join/physical_piecewise_merge_join.cpp | 81 duckdb-0.8.0/duckdb/src/duckdb/src/execution/operator/join/physical_positional_join.cpp | 25 duckdb-0.8.0/duckdb/src/duckdb/src/execution/operator/join/physical_range_join.cpp | 10 duckdb-0.8.0/duckdb/src/duckdb/src/execution/operator/order/physical_order.cpp | 52 duckdb-0.8.0/duckdb/src/duckdb/src/execution/operator/order/physical_top_n.cpp | 40 duckdb-0.8.0/duckdb/src/duckdb/src/execution/operator/persistent/base_csv_reader.cpp | 183 duckdb-0.8.0/duckdb/src/duckdb/src/execution/operator/persistent/buffered_csv_reader.cpp | 195 duckdb-0.8.0/duckdb/src/duckdb/src/execution/operator/persistent/csv_buffer.cpp | 30 duckdb-0.8.0/duckdb/src/duckdb/src/execution/operator/persistent/csv_file_handle.cpp |only duckdb-0.8.0/duckdb/src/duckdb/src/execution/operator/persistent/csv_reader_options.cpp | 43 duckdb-0.8.0/duckdb/src/duckdb/src/execution/operator/persistent/parallel_csv_reader.cpp | 270 duckdb-0.8.0/duckdb/src/duckdb/src/execution/operator/persistent/physical_batch_copy_to_file.cpp |only duckdb-0.8.0/duckdb/src/duckdb/src/execution/operator/persistent/physical_batch_insert.cpp | 371 duckdb-0.8.0/duckdb/src/duckdb/src/execution/operator/persistent/physical_copy_to_file.cpp | 94 duckdb-0.8.0/duckdb/src/duckdb/src/execution/operator/persistent/physical_delete.cpp | 50 duckdb-0.8.0/duckdb/src/duckdb/src/execution/operator/persistent/physical_export.cpp | 101 duckdb-0.8.0/duckdb/src/duckdb/src/execution/operator/persistent/physical_fixed_batch_copy.cpp |only duckdb-0.8.0/duckdb/src/duckdb/src/execution/operator/persistent/physical_insert.cpp | 252 duckdb-0.8.0/duckdb/src/duckdb/src/execution/operator/persistent/physical_update.cpp | 55 duckdb-0.8.0/duckdb/src/duckdb/src/execution/operator/projection/physical_pivot.cpp |only duckdb-0.8.0/duckdb/src/duckdb/src/execution/operator/projection/physical_projection.cpp | 40 duckdb-0.8.0/duckdb/src/duckdb/src/execution/operator/projection/physical_tableinout_function.cpp | 14 duckdb-0.8.0/duckdb/src/duckdb/src/execution/operator/projection/physical_unnest.cpp | 11 duckdb-0.8.0/duckdb/src/duckdb/src/execution/operator/scan/physical_column_data_scan.cpp | 30 duckdb-0.8.0/duckdb/src/duckdb/src/execution/operator/scan/physical_dummy_scan.cpp | 23 duckdb-0.8.0/duckdb/src/duckdb/src/execution/operator/scan/physical_empty_result.cpp | 5 duckdb-0.8.0/duckdb/src/duckdb/src/execution/operator/scan/physical_expression_scan.cpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/execution/operator/scan/physical_positional_scan.cpp | 54 duckdb-0.8.0/duckdb/src/duckdb/src/execution/operator/scan/physical_table_scan.cpp | 48 duckdb-0.8.0/duckdb/src/duckdb/src/execution/operator/schema/physical_alter.cpp | 24 duckdb-0.8.0/duckdb/src/duckdb/src/execution/operator/schema/physical_attach.cpp | 38 duckdb-0.8.0/duckdb/src/duckdb/src/execution/operator/schema/physical_create_function.cpp | 25 duckdb-0.8.0/duckdb/src/duckdb/src/execution/operator/schema/physical_create_index.cpp | 74 duckdb-0.8.0/duckdb/src/duckdb/src/execution/operator/schema/physical_create_schema.cpp | 25 duckdb-0.8.0/duckdb/src/duckdb/src/execution/operator/schema/physical_create_sequence.cpp | 25 duckdb-0.8.0/duckdb/src/duckdb/src/execution/operator/schema/physical_create_table.cpp | 27 duckdb-0.8.0/duckdb/src/duckdb/src/execution/operator/schema/physical_create_type.cpp | 113 duckdb-0.8.0/duckdb/src/duckdb/src/execution/operator/schema/physical_create_view.cpp | 25 duckdb-0.8.0/duckdb/src/duckdb/src/execution/operator/schema/physical_detach.cpp | 25 duckdb-0.8.0/duckdb/src/duckdb/src/execution/operator/schema/physical_drop.cpp | 26 duckdb-0.8.0/duckdb/src/duckdb/src/execution/operator/set/physical_recursive_cte.cpp | 57 duckdb-0.8.0/duckdb/src/duckdb/src/execution/operator/set/physical_union.cpp | 19 duckdb-0.8.0/duckdb/src/duckdb/src/execution/partitionable_hashtable.cpp | 77 duckdb-0.8.0/duckdb/src/duckdb/src/execution/perfect_aggregate_hashtable.cpp | 78 duckdb-0.8.0/duckdb/src/duckdb/src/execution/physical_operator.cpp | 75 duckdb-0.8.0/duckdb/src/duckdb/src/execution/physical_plan/plan_aggregate.cpp | 64 duckdb-0.8.0/duckdb/src/duckdb/src/execution/physical_plan/plan_any_join.cpp | 4 duckdb-0.8.0/duckdb/src/duckdb/src/execution/physical_plan/plan_asof_join.cpp |only duckdb-0.8.0/duckdb/src/duckdb/src/execution/physical_plan/plan_column_data_get.cpp | 6 duckdb-0.8.0/duckdb/src/duckdb/src/execution/physical_plan/plan_comparison_join.cpp | 191 duckdb-0.8.0/duckdb/src/duckdb/src/execution/physical_plan/plan_copy_to_file.cpp | 47 duckdb-0.8.0/duckdb/src/duckdb/src/execution/physical_plan/plan_create.cpp | 18 duckdb-0.8.0/duckdb/src/duckdb/src/execution/physical_plan/plan_create_index.cpp | 32 duckdb-0.8.0/duckdb/src/duckdb/src/execution/physical_plan/plan_create_table.cpp | 15 duckdb-0.8.0/duckdb/src/duckdb/src/execution/physical_plan/plan_cross_product.cpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/execution/physical_plan/plan_delete.cpp | 8 duckdb-0.8.0/duckdb/src/duckdb/src/execution/physical_plan/plan_delim_get.cpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/execution/physical_plan/plan_delim_join.cpp | 25 duckdb-0.8.0/duckdb/src/duckdb/src/execution/physical_plan/plan_distinct.cpp | 31 duckdb-0.8.0/duckdb/src/duckdb/src/execution/physical_plan/plan_dummy_scan.cpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/execution/physical_plan/plan_empty_result.cpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/execution/physical_plan/plan_execute.cpp | 4 duckdb-0.8.0/duckdb/src/duckdb/src/execution/physical_plan/plan_explain.cpp | 21 duckdb-0.8.0/duckdb/src/duckdb/src/execution/physical_plan/plan_export.cpp | 4 duckdb-0.8.0/duckdb/src/duckdb/src/execution/physical_plan/plan_expression_get.cpp | 12 duckdb-0.8.0/duckdb/src/duckdb/src/execution/physical_plan/plan_filter.cpp | 6 duckdb-0.8.0/duckdb/src/duckdb/src/execution/physical_plan/plan_get.cpp | 25 duckdb-0.8.0/duckdb/src/duckdb/src/execution/physical_plan/plan_insert.cpp | 36 duckdb-0.8.0/duckdb/src/duckdb/src/execution/physical_plan/plan_limit.cpp | 13 duckdb-0.8.0/duckdb/src/duckdb/src/execution/physical_plan/plan_limit_percent.cpp | 4 duckdb-0.8.0/duckdb/src/duckdb/src/execution/physical_plan/plan_order.cpp | 4 duckdb-0.8.0/duckdb/src/duckdb/src/execution/physical_plan/plan_pivot.cpp |only duckdb-0.8.0/duckdb/src/duckdb/src/execution/physical_plan/plan_positional_join.cpp | 19 duckdb-0.8.0/duckdb/src/duckdb/src/execution/physical_plan/plan_pragma.cpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/execution/physical_plan/plan_prepare.cpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/execution/physical_plan/plan_projection.cpp | 4 duckdb-0.8.0/duckdb/src/duckdb/src/execution/physical_plan/plan_recursive_cte.cpp | 14 duckdb-0.8.0/duckdb/src/duckdb/src/execution/physical_plan/plan_reset.cpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/execution/physical_plan/plan_sample.cpp | 11 duckdb-0.8.0/duckdb/src/duckdb/src/execution/physical_plan/plan_set.cpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/execution/physical_plan/plan_set_operation.cpp | 10 duckdb-0.8.0/duckdb/src/duckdb/src/execution/physical_plan/plan_show_select.cpp | 8 duckdb-0.8.0/duckdb/src/duckdb/src/execution/physical_plan/plan_simple.cpp | 28 duckdb-0.8.0/duckdb/src/duckdb/src/execution/physical_plan/plan_top_n.cpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/execution/physical_plan/plan_unnest.cpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/execution/physical_plan/plan_update.cpp | 6 duckdb-0.8.0/duckdb/src/duckdb/src/execution/physical_plan/plan_window.cpp | 26 duckdb-0.8.0/duckdb/src/duckdb/src/execution/physical_plan_generator.cpp | 96 duckdb-0.8.0/duckdb/src/duckdb/src/execution/radix_partitioned_hashtable.cpp | 165 duckdb-0.8.0/duckdb/src/duckdb/src/execution/reservoir_sample.cpp | 6 duckdb-0.8.0/duckdb/src/duckdb/src/execution/window_segment_tree.cpp | 228 duckdb-0.8.0/duckdb/src/duckdb/src/function/aggregate/distributive/count.cpp | 7 duckdb-0.8.0/duckdb/src/duckdb/src/function/aggregate/distributive/first.cpp | 22 duckdb-0.8.0/duckdb/src/duckdb/src/function/aggregate/distributive_functions.cpp | 16 duckdb-0.8.0/duckdb/src/duckdb/src/function/aggregate/sorted_aggregate_function.cpp | 404 duckdb-0.8.0/duckdb/src/duckdb/src/function/built_in_functions.cpp | 20 duckdb-0.8.0/duckdb/src/duckdb/src/function/cast/bit_cast.cpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/function/cast/blob_cast.cpp | 1 duckdb-0.8.0/duckdb/src/duckdb/src/function/cast/cast_function_set.cpp | 119 duckdb-0.8.0/duckdb/src/duckdb/src/function/cast/enum_casts.cpp | 34 duckdb-0.8.0/duckdb/src/duckdb/src/function/cast/list_casts.cpp | 27 duckdb-0.8.0/duckdb/src/duckdb/src/function/cast/map_cast.cpp | 9 duckdb-0.8.0/duckdb/src/duckdb/src/function/cast/string_cast.cpp | 54 duckdb-0.8.0/duckdb/src/duckdb/src/function/cast/struct_cast.cpp | 36 duckdb-0.8.0/duckdb/src/duckdb/src/function/cast/time_casts.cpp | 4 duckdb-0.8.0/duckdb/src/duckdb/src/function/cast/union_casts.cpp | 54 duckdb-0.8.0/duckdb/src/duckdb/src/function/cast/vector_cast_helpers.cpp | 11 duckdb-0.8.0/duckdb/src/duckdb/src/function/cast_rules.cpp | 13 duckdb-0.8.0/duckdb/src/duckdb/src/function/compression_config.cpp | 18 duckdb-0.8.0/duckdb/src/duckdb/src/function/function.cpp | 16 duckdb-0.8.0/duckdb/src/duckdb/src/function/function_binder.cpp | 26 duckdb-0.8.0/duckdb/src/duckdb/src/function/function_set.cpp | 25 duckdb-0.8.0/duckdb/src/duckdb/src/function/macro_function.cpp | 49 duckdb-0.8.0/duckdb/src/duckdb/src/function/pragma/pragma_queries.cpp | 46 duckdb-0.8.0/duckdb/src/duckdb/src/function/pragma_function.cpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/function/scalar/generic/constant_or_null.cpp | 12 duckdb-0.8.0/duckdb/src/duckdb/src/function/scalar/generic_functions.cpp | 9 duckdb-0.8.0/duckdb/src/duckdb/src/function/scalar/list/contains_or_position.cpp | 152 duckdb-0.8.0/duckdb/src/duckdb/src/function/scalar/list/list_concat.cpp | 22 duckdb-0.8.0/duckdb/src/duckdb/src/function/scalar/list/list_extract.cpp | 19 duckdb-0.8.0/duckdb/src/duckdb/src/function/scalar/nested_functions.cpp | 19 duckdb-0.8.0/duckdb/src/duckdb/src/function/scalar/operators.cpp | 6 duckdb-0.8.0/duckdb/src/duckdb/src/function/scalar/operators/add.cpp | 9 duckdb-0.8.0/duckdb/src/duckdb/src/function/scalar/operators/arithmetic.cpp | 130 duckdb-0.8.0/duckdb/src/duckdb/src/function/scalar/operators/multiply.cpp | 11 duckdb-0.8.0/duckdb/src/duckdb/src/function/scalar/operators/subtract.cpp | 6 duckdb-0.8.0/duckdb/src/duckdb/src/function/scalar/sequence/nextval.cpp | 81 duckdb-0.8.0/duckdb/src/duckdb/src/function/scalar/strftime_format.cpp |only duckdb-0.8.0/duckdb/src/duckdb/src/function/scalar/string/caseconvert.cpp | 12 duckdb-0.8.0/duckdb/src/duckdb/src/function/scalar/string/concat.cpp | 14 duckdb-0.8.0/duckdb/src/duckdb/src/function/scalar/string/contains.cpp | 4 duckdb-0.8.0/duckdb/src/duckdb/src/function/scalar/string/length.cpp | 27 duckdb-0.8.0/duckdb/src/duckdb/src/function/scalar/string/like.cpp | 41 duckdb-0.8.0/duckdb/src/duckdb/src/function/scalar/string/nfc_normalize.cpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/function/scalar/string/prefix.cpp | 4 duckdb-0.8.0/duckdb/src/duckdb/src/function/scalar/string/regexp |only duckdb-0.8.0/duckdb/src/duckdb/src/function/scalar/string/regexp.cpp | 308 duckdb-0.8.0/duckdb/src/duckdb/src/function/scalar/string/strip_accents.cpp | 4 duckdb-0.8.0/duckdb/src/duckdb/src/function/scalar/string/substring.cpp | 14 duckdb-0.8.0/duckdb/src/duckdb/src/function/scalar/string/suffix.cpp | 4 duckdb-0.8.0/duckdb/src/duckdb/src/function/scalar/string_functions.cpp | 37 duckdb-0.8.0/duckdb/src/duckdb/src/function/scalar/struct/struct_extract.cpp | 25 duckdb-0.8.0/duckdb/src/duckdb/src/function/scalar/system/aggregate_export.cpp | 63 duckdb-0.8.0/duckdb/src/duckdb/src/function/scalar_macro_function.cpp | 18 duckdb-0.8.0/duckdb/src/duckdb/src/function/table/arrow.cpp | 106 duckdb-0.8.0/duckdb/src/duckdb/src/function/table/arrow_conversion.cpp | 170 duckdb-0.8.0/duckdb/src/duckdb/src/function/table/checkpoint.cpp | 20 duckdb-0.8.0/duckdb/src/duckdb/src/function/table/copy_csv.cpp | 215 duckdb-0.8.0/duckdb/src/duckdb/src/function/table/glob.cpp | 19 duckdb-0.8.0/duckdb/src/duckdb/src/function/table/pragma_detailed_profiling_output.cpp | 29 duckdb-0.8.0/duckdb/src/duckdb/src/function/table/pragma_last_profiling_output.cpp | 24 duckdb-0.8.0/duckdb/src/duckdb/src/function/table/range.cpp | 21 duckdb-0.8.0/duckdb/src/duckdb/src/function/table/read_csv.cpp | 802 duckdb-0.8.0/duckdb/src/duckdb/src/function/table/repeat.cpp | 8 duckdb-0.8.0/duckdb/src/duckdb/src/function/table/repeat_row.cpp |only duckdb-0.8.0/duckdb/src/duckdb/src/function/table/summary.cpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/function/table/system/duckdb_columns.cpp | 61 duckdb-0.8.0/duckdb/src/duckdb/src/function/table/system/duckdb_constraints.cpp | 61 duckdb-0.8.0/duckdb/src/duckdb/src/function/table/system/duckdb_databases.cpp | 8 duckdb-0.8.0/duckdb/src/duckdb/src/function/table/system/duckdb_dependencies.cpp | 26 duckdb-0.8.0/duckdb/src/duckdb/src/function/table/system/duckdb_extensions.cpp | 8 duckdb-0.8.0/duckdb/src/duckdb/src/function/table/system/duckdb_functions.cpp | 124 duckdb-0.8.0/duckdb/src/duckdb/src/function/table/system/duckdb_indexes.cpp | 29 duckdb-0.8.0/duckdb/src/duckdb/src/function/table/system/duckdb_keywords.cpp | 4 duckdb-0.8.0/duckdb/src/duckdb/src/function/table/system/duckdb_schemas.cpp | 18 duckdb-0.8.0/duckdb/src/duckdb/src/function/table/system/duckdb_sequences.cpp | 21 duckdb-0.8.0/duckdb/src/duckdb/src/function/table/system/duckdb_settings.cpp | 7 duckdb-0.8.0/duckdb/src/duckdb/src/function/table/system/duckdb_tables.cpp | 25 duckdb-0.8.0/duckdb/src/duckdb/src/function/table/system/duckdb_temporary_files.cpp | 4 duckdb-0.8.0/duckdb/src/duckdb/src/function/table/system/duckdb_types.cpp | 33 duckdb-0.8.0/duckdb/src/duckdb/src/function/table/system/duckdb_views.cpp | 23 duckdb-0.8.0/duckdb/src/duckdb/src/function/table/system/pragma_collations.cpp | 8 duckdb-0.8.0/duckdb/src/duckdb/src/function/table/system/pragma_database_size.cpp | 14 duckdb-0.8.0/duckdb/src/duckdb/src/function/table/system/pragma_storage_info.cpp | 20 duckdb-0.8.0/duckdb/src/duckdb/src/function/table/system/pragma_table_info.cpp | 47 duckdb-0.8.0/duckdb/src/duckdb/src/function/table/system/test_all_types.cpp | 12 duckdb-0.8.0/duckdb/src/duckdb/src/function/table/system/test_vector_types.cpp | 12 duckdb-0.8.0/duckdb/src/duckdb/src/function/table/table_scan.cpp | 187 duckdb-0.8.0/duckdb/src/duckdb/src/function/table/unnest.cpp | 20 duckdb-0.8.0/duckdb/src/duckdb/src/function/table/version/pragma_version.cpp | 14 duckdb-0.8.0/duckdb/src/duckdb/src/function/table_function.cpp | 41 duckdb-0.8.0/duckdb/src/duckdb/src/function/table_macro_function.cpp | 16 duckdb-0.8.0/duckdb/src/duckdb/src/function/udf_function.cpp | 4 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb.h | 99 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb.hpp | 1 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/catalog/catalog.hpp | 228 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_entry.hpp | 52 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_entry/aggregate_function_catalog_entry.hpp | 9 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_entry/collate_catalog_entry.hpp | 6 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_entry/column_dependency_manager.hpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_entry/copy_function_catalog_entry.hpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_entry/duck_index_entry.hpp | 6 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_entry/duck_schema_entry.hpp | 44 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_entry/duck_table_entry.hpp | 13 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_entry/function_entry.hpp |only duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_entry/index_catalog_entry.hpp | 12 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_entry/macro_catalog_entry.hpp | 15 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_entry/pragma_function_catalog_entry.hpp | 6 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_entry/scalar_function_catalog_entry.hpp | 8 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_entry/scalar_macro_catalog_entry.hpp | 8 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_entry/schema_catalog_entry.hpp | 43 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_entry/sequence_catalog_entry.hpp | 6 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_entry/table_catalog_entry.hpp | 15 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_entry/table_function_catalog_entry.hpp | 20 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_entry/table_macro_catalog_entry.hpp | 8 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_entry/type_catalog_entry.hpp | 6 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_entry/view_catalog_entry.hpp | 12 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_entry_map.hpp |only duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_search_path.hpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_set.hpp | 49 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_transaction.hpp | 9 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/catalog/default/default_functions.hpp | 4 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/catalog/default/default_types.hpp | 4 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/catalog/default/default_views.hpp | 4 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/catalog/dependency.hpp | 9 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/catalog/dependency_list.hpp | 10 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/catalog/dependency_manager.hpp | 19 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/catalog/duck_catalog.hpp | 19 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/catalog/similar_catalog_entry.hpp | 5 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/catalog/standard_entry.hpp | 14 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/adbc |only duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/algorithm.hpp | 1 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/allocator.hpp | 6 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/arrow/arrow_appender.hpp | 6 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/arrow/arrow_converter.hpp | 8 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/arrow/arrow_options.hpp |only duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/bit_utils.hpp |only duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/box_renderer.hpp | 10 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/case_insensitive_map.hpp | 5 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/common.hpp | 1 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/compressed_file_system.hpp | 7 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/constants.hpp | 54 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/crypto/md5.hpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/enum_util.hpp |only duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/enums/aggregate_handling.hpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/enums/debug_initialize.hpp |only duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/enums/expression_type.hpp | 5 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/enums/file_glob_options.hpp |only duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/enums/join_type.hpp | 6 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/enums/joinref_type.hpp | 11 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/enums/logical_operator_type.hpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/enums/on_entry_not_found.hpp |only duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/enums/operator_result_type.hpp | 20 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/enums/order_preservation_type.hpp |only duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/enums/order_type.hpp | 10 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/enums/physical_operator_type.hpp | 5 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/enums/set_operation_type.hpp | 3 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/enums/statement_type.hpp | 3 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/enums/tableref_type.hpp | 3 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/exception.hpp | 92 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/exception_format_value.hpp | 37 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/fast_mem.hpp | 528 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/field_writer.hpp | 22 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/file_buffer.hpp | 3 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/file_opener.hpp | 1 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/file_system.hpp | 29 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/filename_pattern.hpp |only duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/gzip_file_system.hpp | 5 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/helper.hpp | 92 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/hive_partitioning.hpp | 22 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/http_state.hpp |only duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/hugeint.hpp |only duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/limits.hpp | 92 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/memory_safety.hpp |only duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/multi_file_reader.hpp |only duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/multi_file_reader_options.hpp |only duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/opener_file_system.hpp |only duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/operator/cast_operators.hpp | 16 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/operator/comparison_operators.hpp | 194 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/operator/convert_to_string.hpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/operator/decimal_cast_operators.hpp | 6 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/operator/multiply.hpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/operator/string_cast.hpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/operator/subtract.hpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/optional_idx.hpp |only duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/optional_ptr.hpp |only duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/perfect_map_set.hpp |only duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/preserved_error.hpp | 7 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/progress_bar/progress_bar.hpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/queue.hpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/radix.hpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/radix_partitioning.hpp | 110 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/re2_regex.hpp | 8 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/reference_map.hpp |only duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/row_operations/row_operations.hpp | 30 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/serializer.hpp | 13 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/serializer/binary_deserializer.hpp |only duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/serializer/binary_serializer.hpp |only duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/serializer/buffered_deserializer.hpp | 6 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/serializer/buffered_file_reader.hpp | 13 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/serializer/buffered_file_writer.hpp | 5 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/serializer/buffered_serializer.hpp | 5 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/serializer/format_deserializer.hpp |only duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/serializer/format_serializer.hpp |only duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/serializer/serialization_traits.hpp |only duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/set.hpp | 3 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/shared_ptr.hpp |only duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/sort/comparators.hpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/sort/duckdb_pdqsort.hpp | 17 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/sort/partition_state.hpp |only duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/sort/sort.hpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/sort/sorted_block.hpp | 4 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/string_util.hpp | 71 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/typedefs.hpp |only duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/types.hpp | 115 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/types/arrow_aux_data.hpp | 3 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/types/batched_data_collection.hpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/types/bit.hpp | 19 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/types/chunk_collection.hpp | 20 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/types/column |only duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/types/conflict_manager.hpp | 5 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/types/data_chunk.hpp | 3 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/types/interval.hpp | 42 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/types/list_segment.hpp |only duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/types/row |only duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/types/selection_vector.hpp | 4 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/types/string_type.hpp | 86 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/types/time.hpp | 3 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/types/type_map.hpp | 20 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/types/validity_mask.hpp | 14 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/types/value.hpp | 81 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/types/value_map.hpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/types/vector.hpp | 16 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/types/vector_buffer.hpp | 45 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/union_by_name.hpp | 83 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/unique_ptr.hpp |only duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/vector.hpp | 97 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/vector_operations/aggregate_executor.hpp | 4 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/vector_operations/unary_executor.hpp | 4 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/common/winapi.hpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/core_functions |only duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/aggregate_hashtable.hpp | 117 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/base_aggregate_hashtable.hpp | 4 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/execution_context.hpp | 5 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/executor.hpp | 25 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/expression_executor.hpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/expression_executor_state.hpp | 6 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/index/art/art.hpp | 115 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/index/art/art_key.hpp | 55 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/index/art/fixed_size_allocator.hpp |only duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/index/art/iterator.hpp | 46 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/index/art/leaf.hpp | 104 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/index/art/leaf_segment.hpp |only duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/index/art/node.hpp | 214 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/index/art/node16.hpp | 84 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/index/art/node256.hpp | 87 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/index/art/node4.hpp | 82 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/index/art/node48.hpp | 92 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/index/art/prefix.hpp | 111 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/index/art/prefix_segment.hpp |only duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/index/art/swizzleable_pointer.hpp | 69 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/join_hashtable.hpp | 116 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/nested_loop_join.hpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/aggregate/aggregate_object.hpp | 17 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/aggregate/distinct_aggregate_data.hpp | 4 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/aggregate/grouped_aggregate_data.hpp | 4 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/aggregate/physical_hash_aggregate.hpp | 33 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/aggregate/physical_perfecthash_aggregate.hpp | 20 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/aggregate/physical_streaming_window.hpp | 7 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/aggregate/physical_ungrouped_aggregate.hpp | 19 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/aggregate/physical_window.hpp | 18 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/filter/physical_filter.hpp | 3 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/helper/physical_batch_collector.hpp | 3 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/helper/physical_execute.hpp | 10 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/helper/physical_explain_analyze.hpp | 14 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/helper/physical_limit.hpp | 15 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/helper/physical_limit_percent.hpp | 15 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/helper/physical_load.hpp | 10 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/helper/physical_materialized_collector.hpp | 4 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/helper/physical_pragma.hpp | 10 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/helper/physical_prepare.hpp | 10 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/helper/physical_reservoir_sample.hpp | 10 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/helper/physical_reset.hpp | 10 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/helper/physical_result_collector.hpp | 9 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/helper/physical_set.hpp | 10 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/helper/physical_streaming_limit.hpp | 5 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/helper/physical_streaming_sample.hpp | 3 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/helper/physical_transaction.hpp | 10 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/helper/physical_vacuum.hpp | 13 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/join/outer_join_marker.hpp | 13 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/join/perfect_hash_join_executor.hpp | 6 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/join/physical_asof_join.hpp |only duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/join/physical_blockwise_nl_join.hpp | 9 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/join/physical_cross_product.hpp | 23 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/join/physical_delim_join.hpp | 17 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/join/physical_hash_join.hpp | 11 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/join/physical_iejoin.hpp | 9 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/join/physical_index_join.hpp | 16 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/join/physical_join.hpp | 13 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/join/physical_nested_loop_join.hpp | 13 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/join/physical_piecewise_merge_join.hpp | 9 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/join/physical_positional_join.hpp | 13 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/join/physical_range_join.hpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/order/physical_order.hpp | 18 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/order/physical_top_n.hpp | 16 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/persistent/base_csv_reader.hpp | 45 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/persistent/buffered_csv_reader.hpp | 12 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/persistent/csv_buffer.hpp | 11 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/persistent/csv_file_handle.hpp | 165 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/persistent/csv_line_info.hpp |only duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/persistent/csv_reader_options.hpp | 44 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/persistent/parallel_csv_reader.hpp | 49 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/persistent/physical_batch_copy_to_file.hpp |only duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/persistent/physical_batch_insert.hpp | 23 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/persistent/physical_copy_to_file.hpp | 23 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/persistent/physical_delete.hpp | 13 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/persistent/physical_export.hpp | 15 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/persistent/physical_fixed_batch_copy.hpp |only duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/persistent/physical_insert.hpp | 35 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/persistent/physical_update.hpp | 13 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/projection/physical_pivot.hpp |only duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/projection/physical_projection.hpp | 8 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/projection/physical_tableinout_function.hpp | 6 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/projection/physical_unnest.hpp | 4 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/scan/physical_column_data_scan.hpp | 19 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/scan/physical_dummy_scan.hpp | 11 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/scan/physical_empty_result.hpp | 10 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/scan/physical_expression_scan.hpp | 3 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/scan/physical_positional_scan.hpp | 10 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/scan/physical_table_scan.hpp | 9 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/schema/physical_alter.hpp | 11 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/schema/physical_attach.hpp | 11 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/schema/physical_create_function.hpp | 11 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/schema/physical_create_index.hpp | 13 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/schema/physical_create_schema.hpp | 11 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/schema/physical_create_sequence.hpp | 11 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/schema/physical_create_table.hpp | 15 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/schema/physical_create_type.hpp | 20 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/schema/physical_create_view.hpp | 11 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/schema/physical_detach.hpp | 11 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/schema/physical_drop.hpp | 11 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/set/physical_recursive_cte.hpp | 17 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/set/physical_union.hpp | 6 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/partitionable_hashtable.hpp | 16 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/perfect_aggregate_hashtable.hpp | 8 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/physical_operator.hpp | 118 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/physical_operator_states.hpp |only duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/physical_plan_generator.hpp | 5 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/radix_partitioned_hashtable.hpp | 12 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/execution/window_segment_tree.hpp | 62 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/function/aggregate/distributive_functions.hpp | 80 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/function/aggregate_function.hpp | 57 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/function/built_in_functions.hpp | 8 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/function/cast/bound_cast_data.hpp |only duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/function/cast/cast_function_set.hpp | 6 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/function/cast/default_casts.hpp | 107 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/function/cast/vector_cast_helpers.hpp | 4 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/function/copy_function.hpp | 60 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/function/function.hpp | 26 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/function/function_binder.hpp | 9 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/function/function_serialization.hpp | 8 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/function/function_set.hpp | 9 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/function/macro_function.hpp | 31 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/function/pragma_function.hpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/function/scalar/generic_functions.hpp | 33 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/function/scalar/list |only duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/function/scalar/nested_functions.hpp | 127 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/function/scalar/operators.hpp | 24 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/function/scalar/regexp.hpp | 82 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/function/scalar/strftime_format.hpp |only duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/function/scalar/string_functions.hpp | 94 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/function/scalar_function.hpp | 20 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/function/scalar_macro_function.hpp | 14 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/function/table/arrow.hpp | 21 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/function/table/range.hpp | 4 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/function/table/read_csv.hpp | 49 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/function/table/table_scan.hpp | 9 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/function/table_function.hpp | 78 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/function/table_macro_function.hpp | 14 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/function/udf_function.hpp | 106 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/main/appender.hpp | 4 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/main/attached_database.hpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/main/capi/capi_internal.hpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/main/capi/cast/utils.hpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/main/client_config.hpp | 16 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/main/client_context.hpp | 6 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/main/client_data.hpp | 15 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/main/config.hpp | 26 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/main/connection.hpp | 17 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/main/connection_manager.hpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/main/database.hpp | 4 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/main/database_manager.hpp | 13 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/main/database_path_and_type.hpp |only duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/main/extension_entries.hpp | 66 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/main/extension_helper.hpp | 12 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/main/extension_util.hpp |only duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/main/materialized_query_result.hpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/main/prepared_statement.hpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/main/query_profiler.hpp | 19 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/main/query_result.hpp | 30 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/main/relation.hpp | 16 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/main/relation/explain_relation.hpp | 3 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/main/relation/setop_relation.hpp | 1 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/main/settings.hpp | 39 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/optimizer/cse_optimizer.hpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/optimizer/expression_rewriter.hpp | 6 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/optimizer/filter_combiner.hpp | 18 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/optimizer/filter_pushdown.hpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/optimizer/join_order/cardinality_estimator.hpp | 32 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/optimizer/join_order/join_node.hpp | 16 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/optimizer/join_order/join_order_optimizer.hpp | 38 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/optimizer/join_order/join_relation.hpp | 23 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/optimizer/join_order/query_graph.hpp | 29 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/optimizer/matcher/expression_matcher.hpp | 22 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/optimizer/matcher/set_matcher.hpp | 16 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/optimizer/optimizer_extension.hpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/optimizer/rule.hpp | 4 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/optimizer/rule/arithmetic_simplification.hpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/optimizer/rule/case_simplification.hpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/optimizer/rule/comparison_simplification.hpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/optimizer/rule/conjunction_simplification.hpp | 4 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/optimizer/rule/constant_folding.hpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/optimizer/rule/date_part_simplification.hpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/optimizer/rule/distributivity.hpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/optimizer/rule/empty_needle_removal.hpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/optimizer/rule/enum_comparison.hpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/optimizer/rule/equal_or_null_simplification.hpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/optimizer/rule/in_clause_simplification.hpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/optimizer/rule/like_optimizations.hpp | 4 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/optimizer/rule/list.hpp | 1 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/optimizer/rule/move_constants.hpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/optimizer/rule/ordered_aggregate_optimizer.hpp |only duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/optimizer/rule/regex_optimizations.hpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parallel/concurrentqueue.hpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parallel/event.hpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parallel/interrupt.hpp |only duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parallel/meta_pipeline.hpp | 10 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parallel/pipeline.hpp | 54 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parallel/pipeline_executor.hpp | 62 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parallel/task.hpp | 23 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parallel/task_counter.hpp | 4 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parallel/task_scheduler.hpp | 4 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/base_expression.hpp | 20 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/column_list.hpp | 14 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/common_table_expression_info.hpp | 4 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/constraint.hpp | 18 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/constraints/check_constraint.hpp | 3 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/constraints/foreign_key_constraint.hpp | 3 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/constraints/not_null_constraint.hpp | 3 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/constraints/unique_constraint.hpp | 3 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/expression/between_expression.hpp | 6 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/expression/bound_expression.hpp | 7 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/expression/case_expression.hpp | 8 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/expression/cast_expression.hpp | 5 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/expression/collate_expression.hpp | 5 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/expression/columnref_expression.hpp | 5 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/expression/comparison_expression.hpp | 5 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/expression/conjunction_expression.hpp | 5 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/expression/constant_expression.hpp | 6 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/expression/default_expression.hpp | 4 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/expression/function_expression.hpp | 11 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/expression/lambda_expression.hpp | 5 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/expression/operator_expression.hpp | 9 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/expression/parameter_expression.hpp | 5 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/expression/positional_reference_expression.hpp | 5 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/expression/star_expression.hpp | 9 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/expression/subquery_expression.hpp | 5 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/expression/window_expression.hpp | 16 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/expression_map.hpp | 25 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/expression_util.hpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/keyword_helper.hpp | 9 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/alter_info.hpp | 18 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/alter_scalar_function_info.hpp |only duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/alter_table_function_info.hpp |only duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/alter_table_info.hpp | 8 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/attach_info.hpp | 11 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/copy_info.hpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/create_database_info.hpp | 4 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/create_function_info.hpp | 6 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/create_macro_info.hpp | 20 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/create_schema_info.hpp | 4 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/create_sequence_info.hpp | 26 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/create_table_function_info.hpp | 3 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/create_table_info.hpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/create_type_info.hpp | 24 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/create_view_info.hpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/detach_info.hpp | 15 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/drop_info.hpp | 44 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/exported_table_data.hpp | 8 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/load_info.hpp | 4 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/parse_info.hpp | 13 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/pragma_info.hpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/sample_options.hpp | 3 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/show_select_info.hpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/transaction_info.hpp | 7 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/vacuum_info.hpp | 23 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/parsed_expression.hpp | 5 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/parser.hpp | 8 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/parser_extension.hpp | 4 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/parser_options.hpp |only duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/query_error_context.hpp | 6 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/query_node.hpp | 33 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/query_node/list.hpp |only duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/query_node/recursive_cte_node.hpp | 6 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/query_node/select_node.hpp | 8 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/query_node/set_operation_node.hpp | 6 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/result_modifier.hpp | 25 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/sql_statement.hpp | 23 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/statement/alter_statement.hpp | 3 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/statement/attach_statement.hpp | 3 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/statement/call_statement.hpp | 3 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/statement/copy_statement.hpp | 3 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/statement/create_statement.hpp | 3 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/statement/delete_statement.hpp | 3 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/statement/detach_statement.hpp | 3 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/statement/drop_statement.hpp | 3 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/statement/execute_statement.hpp | 3 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/statement/explain_statement.hpp | 3 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/statement/export_statement.hpp | 3 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/statement/extension_statement.hpp | 3 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/statement/insert_statement.hpp | 13 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/statement/list.hpp | 1 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/statement/load_statement.hpp | 3 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/statement/logical_plan_statement.hpp | 3 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/statement/multi_statement.hpp |only duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/statement/pragma_statement.hpp | 3 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/statement/prepare_statement.hpp | 3 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/statement/relation_statement.hpp | 3 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/statement/select_statement.hpp | 12 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/statement/set_statement.hpp | 3 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/statement/show_statement.hpp | 3 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/statement/transaction_statement.hpp | 3 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/statement/update_statement.hpp | 3 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/statement/vacuum_statement.hpp | 3 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/tableref.hpp | 24 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/tableref/basetableref.hpp | 7 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/tableref/emptytableref.hpp | 5 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/tableref/expressionlistref.hpp | 6 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/tableref/joinref.hpp | 6 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/tableref/list.hpp | 1 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/tableref/pivotref.hpp |only duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/tableref/subqueryref.hpp | 6 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/tableref/table_function_ref.hpp | 6 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/tokens.hpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/parser/transformer.hpp | 99 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/bind_context.hpp | 33 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/binder.hpp | 89 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/bound_constraint.hpp | 20 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/bound_query_node.hpp | 17 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/bound_result_modifier.hpp | 9 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/bound_tableref.hpp | 17 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/bound_tokens.hpp | 1 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/column_binding.hpp | 6 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/constraints/bound_check_constraint.hpp | 3 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/constraints/bound_foreign_key_constraint.hpp | 3 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/constraints/bound_not_null_constraint.hpp | 3 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/constraints/bound_unique_constraint.hpp | 3 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/expression.hpp | 7 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/expression/bound_aggregate_expression.hpp | 7 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/expression/bound_between_expression.hpp | 3 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/expression/bound_case_expression.hpp | 3 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/expression/bound_cast_expression.hpp | 3 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/expression/bound_columnref_expression.hpp | 4 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/expression/bound_comparison_expression.hpp | 3 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/expression/bound_conjunction_expression.hpp | 3 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/expression/bound_constant_expression.hpp | 3 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/expression/bound_default_expression.hpp | 5 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/expression/bound_function_expression.hpp | 3 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/expression/bound_lambda_expression.hpp | 3 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/expression/bound_lambdaref_expression.hpp | 3 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/expression/bound_operator_expression.hpp | 3 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/expression/bound_parameter_expression.hpp | 3 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/expression/bound_reference_expression.hpp | 3 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/expression/bound_subquery_expression.hpp | 3 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/expression/bound_unnest_expression.hpp | 3 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/expression/bound_window_expression.hpp | 5 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/expression_binder.hpp | 30 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/expression_binder/aggregate_binder.hpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/expression_binder/alter_binder.hpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/expression_binder/base_select_binder.hpp |only duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/expression_binder/check_binder.hpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/expression_binder/constant_binder.hpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/expression_binder/group_binder.hpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/expression_binder/having_binder.hpp | 8 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/expression_binder/index_binder.hpp | 10 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/expression_binder/insert_binder.hpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/expression_binder/lateral_binder.hpp | 4 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/expression_binder/order_binder.hpp | 11 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/expression_binder/qualify_binder.hpp | 8 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/expression_binder/relation_binder.hpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/expression_binder/returning_binder.hpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/expression_binder/select_binder.hpp | 47 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/expression_binder/table_function_binder.hpp | 4 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/expression_binder/update_binder.hpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/expression_binder/where_binder.hpp | 8 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/logical_operator.hpp | 17 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/logical_tokens.hpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/list.hpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_aggregate.hpp | 6 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_any_join.hpp | 3 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_asof_join.hpp |only duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_column_data_get.hpp | 6 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_comparison_join.hpp | 10 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_copy_to_file.hpp | 7 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_create.hpp | 8 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_create_index.hpp | 3 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_create_table.hpp | 7 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_cross_product.hpp | 3 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_cteref.hpp | 4 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_delete.hpp | 8 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_delim_get.hpp | 4 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_delim_join.hpp | 3 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_distinct.hpp | 19 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_dummy_scan.hpp | 4 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_empty_result.hpp | 3 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_execute.hpp | 3 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_explain.hpp | 3 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_export.hpp | 3 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_expression_get.hpp | 4 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_extension_operator.hpp | 4 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_filter.hpp | 3 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_get.hpp | 5 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_insert.hpp | 8 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_join.hpp | 3 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_limit.hpp | 3 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_limit_percent.hpp | 3 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_order.hpp | 3 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_pivot.hpp |only duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_positional_join.hpp | 3 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_pragma.hpp | 3 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_prepare.hpp | 3 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_projection.hpp | 4 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_recursive_cte.hpp | 15 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_reset.hpp | 3 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_sample.hpp | 3 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_set.hpp | 3 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_set_operation.hpp | 4 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_show.hpp | 3 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_simple.hpp | 3 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_top_n.hpp | 3 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_unconditional_join.hpp | 3 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_unnest.hpp | 4 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_update.hpp | 8 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_window.hpp | 4 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/operator_extension.hpp | 8 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/parsed_data/bound_create_function_info.hpp | 5 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/parsed_data/bound_create_table_info.hpp | 5 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/pragma_handler.hpp | 5 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/query_node/bound_recursive_cte_node.hpp | 3 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/query_node/bound_select_node.hpp | 15 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/query_node/bound_set_operation_node.hpp | 3 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/query_node/list.hpp |only duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/table_binding.hpp | 11 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/tableref/bound_basetableref.hpp | 7 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/tableref/bound_cteref.hpp | 3 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/tableref/bound_dummytableref.hpp | 3 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/tableref/bound_expressionlistref.hpp | 3 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/tableref/bound_joinref.hpp | 3 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/tableref/bound_pivotref.hpp |only duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/tableref/bound_pos_join_ref.hpp | 3 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/tableref/bound_subqueryref.hpp | 3 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/tableref/bound_table_function.hpp | 3 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/planner/tableref/list.hpp | 1 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/arena_allocator.hpp | 11 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/block_manager.hpp | 1 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/buffer/block_handle.hpp | 27 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/buffer/buffer_handle.hpp | 11 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/buffer/buffer_pool.hpp |only duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/buffer/temporary_file_information.hpp |only duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/buffer_manager.hpp | 198 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/checkpoint/table_data_writer.hpp | 5 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/checkpoint_manager.hpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/compression/chimp/algorithm/chimp128.hpp | 1 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/compression/chimp/algorithm/chimp_utils.hpp | 97 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/compression/chimp/chimp_analyze.hpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/compression/chimp/chimp_compress.hpp | 16 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/compression/chimp/chimp_fetch.hpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/compression/chimp/chimp_scan.hpp | 5 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/compression/patas/algorithm/patas.hpp | 1 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/compression/patas/patas_analyze.hpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/compression/patas/patas_compress.hpp | 16 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/compression/patas/patas_fetch.hpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/compression/patas/patas_scan.hpp | 5 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/data_pointer.hpp | 7 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/data_table.hpp | 17 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/in_memory_block_manager.hpp | 3 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/index.hpp | 67 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/meta_block_reader.hpp | 7 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/optimistic_data_writer.hpp |only duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/partial_block_manager.hpp | 30 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/single_file_block_manager.hpp | 16 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/standard_buffer_manager.hpp |only duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/statistics/base_statistics.hpp | 122 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/statistics/column_statistics.hpp | 25 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/statistics/distinct_statistics.hpp | 14 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/statistics/list_stats.hpp |only duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/statistics/node_statistics.hpp | 26 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/statistics/numeric_stats.hpp |only duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/statistics/numeric_stats_union.hpp |only duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/statistics/segment_statistics.hpp | 9 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/statistics/string_stats.hpp |only duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/statistics/struct_stats.hpp |only duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/storage_extension.hpp | 4 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/storage_manager.hpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/string_uncompressed.hpp | 9 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/table/append_state.hpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/table/column_checkpoint_state.hpp | 50 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/table/column_data.hpp | 45 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/table/column_data_checkpointer.hpp | 8 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/table/column_segment.hpp | 16 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/table/column_segment_tree.hpp |only duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/table/list_column_data.hpp | 6 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/table/persistent_table_data.hpp | 9 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/table/row_group.hpp | 88 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/table/row_group_collection.hpp | 33 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/table/row_group_segment_tree.hpp |only duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/table/scan_state.hpp | 60 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/table/segment_base.hpp | 14 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/table/segment_tree.hpp | 333 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/table/standard_column_data.hpp | 10 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/table/struct_column_data.hpp | 4 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/table/table_index_list.hpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/table/table_statistics.hpp | 5 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/table/update_segment.hpp | 15 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/table/validity_column_data.hpp | 3 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/table_storage_info.hpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/storage/write_ahead_log.hpp | 42 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/transaction/cleanup_state.hpp | 11 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/transaction/commit_state.hpp | 12 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/transaction/duck_transaction.hpp | 6 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/transaction/local_storage.hpp | 109 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/transaction/meta_transaction.hpp | 11 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/transaction/transaction.hpp | 12 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/transaction/transaction_data.hpp | 3 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/transaction/undo_buffer.hpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/verification/deserialized_statement_verifier_v2.hpp |only duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/verification/no_operator_caching_verifier.hpp |only duckdb-0.8.0/duckdb/src/duckdb/src/include/duckdb/verification/statement_verifier.hpp | 6 duckdb-0.8.0/duckdb/src/duckdb/src/main/appender.cpp | 18 duckdb-0.8.0/duckdb/src/duckdb/src/main/attached_database.cpp | 39 duckdb-0.8.0/duckdb/src/duckdb/src/main/capi/appender-c.cpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/main/capi/cast/from_decimal-c.cpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/main/capi/duckdb-c.cpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/main/capi/helper-c.cpp | 7 duckdb-0.8.0/duckdb/src/duckdb/src/main/capi/pending-c.cpp | 25 duckdb-0.8.0/duckdb/src/duckdb/src/main/capi/replacement_scan-c.cpp | 8 duckdb-0.8.0/duckdb/src/duckdb/src/main/capi/result-c.cpp | 34 duckdb-0.8.0/duckdb/src/duckdb/src/main/capi/stream-c.cpp |only duckdb-0.8.0/duckdb/src/duckdb/src/main/capi/table_function-c.cpp | 82 duckdb-0.8.0/duckdb/src/duckdb/src/main/capi/threading-c.cpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/main/client_context.cpp | 211 duckdb-0.8.0/duckdb/src/duckdb/src/main/client_data.cpp | 40 duckdb-0.8.0/duckdb/src/duckdb/src/main/client_verify.cpp | 9 duckdb-0.8.0/duckdb/src/duckdb/src/main/config.cpp | 104 duckdb-0.8.0/duckdb/src/duckdb/src/main/connection.cpp | 6 duckdb-0.8.0/duckdb/src/duckdb/src/main/database.cpp | 178 duckdb-0.8.0/duckdb/src/duckdb/src/main/database_manager.cpp | 33 duckdb-0.8.0/duckdb/src/duckdb/src/main/database_path_and_type.cpp |only duckdb-0.8.0/duckdb/src/duckdb/src/main/db_instance_cache.cpp | 8 duckdb-0.8.0/duckdb/src/duckdb/src/main/extension/extension_helper.cpp | 22 duckdb-0.8.0/duckdb/src/duckdb/src/main/extension/extension_install.cpp | 71 duckdb-0.8.0/duckdb/src/duckdb/src/main/extension/extension_load.cpp | 169 duckdb-0.8.0/duckdb/src/duckdb/src/main/extension/extension_util.cpp |only duckdb-0.8.0/duckdb/src/duckdb/src/main/materialized_query_result.cpp | 4 duckdb-0.8.0/duckdb/src/duckdb/src/main/pending_query_result.cpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/main/prepared_statement.cpp | 6 duckdb-0.8.0/duckdb/src/duckdb/src/main/query_profiler.cpp | 92 duckdb-0.8.0/duckdb/src/duckdb/src/main/query_result.cpp | 15 duckdb-0.8.0/duckdb/src/duckdb/src/main/relation.cpp | 15 duckdb-0.8.0/duckdb/src/duckdb/src/main/relation/aggregate_relation.cpp | 4 duckdb-0.8.0/duckdb/src/duckdb/src/main/relation/create_table_relation.cpp | 4 duckdb-0.8.0/duckdb/src/duckdb/src/main/relation/create_view_relation.cpp | 4 duckdb-0.8.0/duckdb/src/duckdb/src/main/relation/cross_product_relation.cpp | 6 duckdb-0.8.0/duckdb/src/duckdb/src/main/relation/delete_relation.cpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/main/relation/explain_relation.cpp | 8 duckdb-0.8.0/duckdb/src/duckdb/src/main/relation/filter_relation.cpp | 8 duckdb-0.8.0/duckdb/src/duckdb/src/main/relation/insert_relation.cpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/main/relation/join_relation.cpp | 9 duckdb-0.8.0/duckdb/src/duckdb/src/main/relation/limit_relation.cpp | 6 duckdb-0.8.0/duckdb/src/duckdb/src/main/relation/order_relation.cpp | 6 duckdb-0.8.0/duckdb/src/duckdb/src/main/relation/projection_relation.cpp | 4 duckdb-0.8.0/duckdb/src/duckdb/src/main/relation/query_relation.cpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/main/relation/read_csv_relation.cpp | 6 duckdb-0.8.0/duckdb/src/duckdb/src/main/relation/setop_relation.cpp | 9 duckdb-0.8.0/duckdb/src/duckdb/src/main/relation/table_function_relation.cpp | 22 duckdb-0.8.0/duckdb/src/duckdb/src/main/relation/table_relation.cpp | 6 duckdb-0.8.0/duckdb/src/duckdb/src/main/relation/update_relation.cpp | 4 duckdb-0.8.0/duckdb/src/duckdb/src/main/relation/value_relation.cpp | 8 duckdb-0.8.0/duckdb/src/duckdb/src/main/relation/view_relation.cpp | 6 duckdb-0.8.0/duckdb/src/duckdb/src/main/relation/write_csv_relation.cpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/main/relation/write_parquet_relation.cpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/main/settings/settings.cpp | 131 duckdb-0.8.0/duckdb/src/duckdb/src/main/stream_query_result.cpp | 10 duckdb-0.8.0/duckdb/src/duckdb/src/optimizer/column_lifetime_analyzer.cpp | 7 duckdb-0.8.0/duckdb/src/duckdb/src/optimizer/common_aggregate_optimizer.cpp | 6 duckdb-0.8.0/duckdb/src/duckdb/src/optimizer/cse_optimizer.cpp | 31 duckdb-0.8.0/duckdb/src/duckdb/src/optimizer/deliminator.cpp | 55 duckdb-0.8.0/duckdb/src/duckdb/src/optimizer/expression_heuristics.cpp | 22 duckdb-0.8.0/duckdb/src/duckdb/src/optimizer/expression_rewriter.cpp | 20 duckdb-0.8.0/duckdb/src/duckdb/src/optimizer/filter_combiner.cpp | 277 duckdb-0.8.0/duckdb/src/duckdb/src/optimizer/filter_pullup.cpp | 10 duckdb-0.8.0/duckdb/src/duckdb/src/optimizer/filter_pushdown.cpp | 28 duckdb-0.8.0/duckdb/src/duckdb/src/optimizer/in_clause_rewriter.cpp | 24 duckdb-0.8.0/duckdb/src/duckdb/src/optimizer/join_order/cardinality_estimator.cpp | 318 duckdb-0.8.0/duckdb/src/duckdb/src/optimizer/join_order/join_node.cpp | 19 duckdb-0.8.0/duckdb/src/duckdb/src/optimizer/join_order/join_order_optimizer.cpp | 472 duckdb-0.8.0/duckdb/src/duckdb/src/optimizer/join_order/join_relation_set.cpp | 66 duckdb-0.8.0/duckdb/src/duckdb/src/optimizer/join_order/query_graph.cpp | 75 duckdb-0.8.0/duckdb/src/duckdb/src/optimizer/matcher/expression_matcher.cpp | 54 duckdb-0.8.0/duckdb/src/duckdb/src/optimizer/optimizer.cpp | 29 duckdb-0.8.0/duckdb/src/duckdb/src/optimizer/pullup/pullup_filter.cpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/optimizer/pullup/pullup_from_left.cpp | 4 duckdb-0.8.0/duckdb/src/duckdb/src/optimizer/pullup/pullup_projection.cpp | 6 duckdb-0.8.0/duckdb/src/duckdb/src/optimizer/pullup/pullup_set_operation.cpp | 6 duckdb-0.8.0/duckdb/src/duckdb/src/optimizer/pushdown/pushdown_aggregate.cpp | 44 duckdb-0.8.0/duckdb/src/duckdb/src/optimizer/pushdown/pushdown_cross_product.cpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/optimizer/pushdown/pushdown_filter.cpp | 4 duckdb-0.8.0/duckdb/src/duckdb/src/optimizer/pushdown/pushdown_get.cpp | 4 duckdb-0.8.0/duckdb/src/duckdb/src/optimizer/pushdown/pushdown_inner_join.cpp | 15 duckdb-0.8.0/duckdb/src/duckdb/src/optimizer/pushdown/pushdown_left_join.cpp | 29 duckdb-0.8.0/duckdb/src/duckdb/src/optimizer/pushdown/pushdown_limit.cpp | 4 duckdb-0.8.0/duckdb/src/duckdb/src/optimizer/pushdown/pushdown_mark_join.cpp | 10 duckdb-0.8.0/duckdb/src/duckdb/src/optimizer/pushdown/pushdown_projection.cpp | 8 duckdb-0.8.0/duckdb/src/duckdb/src/optimizer/pushdown/pushdown_set_operation.cpp | 16 duckdb-0.8.0/duckdb/src/duckdb/src/optimizer/pushdown/pushdown_single_join.cpp | 4 duckdb-0.8.0/duckdb/src/duckdb/src/optimizer/regex_range_filter.cpp | 18 duckdb-0.8.0/duckdb/src/duckdb/src/optimizer/remove_unused_columns.cpp | 29 duckdb-0.8.0/duckdb/src/duckdb/src/optimizer/rule/arithmetic_simplification.cpp | 61 duckdb-0.8.0/duckdb/src/duckdb/src/optimizer/rule/case_simplification.cpp | 20 duckdb-0.8.0/duckdb/src/duckdb/src/optimizer/rule/comparison_simplification.cpp | 45 duckdb-0.8.0/duckdb/src/duckdb/src/optimizer/rule/conjunction_simplification.cpp | 33 duckdb-0.8.0/duckdb/src/duckdb/src/optimizer/rule/constant_folding.cpp | 18 duckdb-0.8.0/duckdb/src/duckdb/src/optimizer/rule/date_part_simplification.cpp | 16 duckdb-0.8.0/duckdb/src/duckdb/src/optimizer/rule/distributivity.cpp | 46 duckdb-0.8.0/duckdb/src/duckdb/src/optimizer/rule/empty_needle_removal.cpp | 29 duckdb-0.8.0/duckdb/src/duckdb/src/optimizer/rule/enum_comparison.cpp | 31 duckdb-0.8.0/duckdb/src/duckdb/src/optimizer/rule/equal_or_null_simplification.cpp | 73 duckdb-0.8.0/duckdb/src/duckdb/src/optimizer/rule/in_clause_simplification_rule.cpp | 33 duckdb-0.8.0/duckdb/src/duckdb/src/optimizer/rule/like_optimizations.cpp | 44 duckdb-0.8.0/duckdb/src/duckdb/src/optimizer/rule/move_constants.cpp | 89 duckdb-0.8.0/duckdb/src/duckdb/src/optimizer/rule/ordered_aggregate_optimizer.cpp |only duckdb-0.8.0/duckdb/src/duckdb/src/optimizer/rule/regex_optimizations.cpp | 42 duckdb-0.8.0/duckdb/src/duckdb/src/optimizer/statistics/expression/propagate_aggregate.cpp | 12 duckdb-0.8.0/duckdb/src/duckdb/src/optimizer/statistics/expression/propagate_and_compress.cpp | 19 duckdb-0.8.0/duckdb/src/duckdb/src/optimizer/statistics/expression/propagate_between.cpp | 12 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| 22 duckdb-0.8.0/duckdb/src/duckdb/src/parser/expression/columnref_expression.cpp | 26 duckdb-0.8.0/duckdb/src/duckdb/src/parser/expression/comparison_expression.cpp | 20 duckdb-0.8.0/duckdb/src/duckdb/src/parser/expression/conjunction_expression.cpp | 23 duckdb-0.8.0/duckdb/src/duckdb/src/parser/expression/constant_expression.cpp | 20 duckdb-0.8.0/duckdb/src/duckdb/src/parser/expression/default_expression.cpp | 11 duckdb-0.8.0/duckdb/src/duckdb/src/parser/expression/function_expression.cpp | 48 duckdb-0.8.0/duckdb/src/duckdb/src/parser/expression/lambda_expression.cpp | 20 duckdb-0.8.0/duckdb/src/duckdb/src/parser/expression/operator_expression.cpp | 19 duckdb-0.8.0/duckdb/src/duckdb/src/parser/expression/parameter_expression.cpp | 19 duckdb-0.8.0/duckdb/src/duckdb/src/parser/expression/positional_reference_expression.cpp | 18 duckdb-0.8.0/duckdb/src/duckdb/src/parser/expression/star_expression.cpp | 38 duckdb-0.8.0/duckdb/src/duckdb/src/parser/expression/subquery_expression.cpp | 24 duckdb-0.8.0/duckdb/src/duckdb/src/parser/expression/window_expression.cpp | 74 duckdb-0.8.0/duckdb/src/duckdb/src/parser/expression_util.cpp | 12 duckdb-0.8.0/duckdb/src/duckdb/src/parser/keyword_helper.cpp | 12 duckdb-0.8.0/duckdb/src/duckdb/src/parser/parsed_data/alter_info.cpp | 16 duckdb-0.8.0/duckdb/src/duckdb/src/parser/parsed_data/alter_scalar_function_info.cpp |only duckdb-0.8.0/duckdb/src/duckdb/src/parser/parsed_data/alter_table_function_info.cpp |only duckdb-0.8.0/duckdb/src/duckdb/src/parser/parsed_data/alter_table_info.cpp | 71 duckdb-0.8.0/duckdb/src/duckdb/src/parser/parsed_data/attach_info.cpp |only duckdb-0.8.0/duckdb/src/duckdb/src/parser/parsed_data/create_aggregate_function_info.cpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/parser/parsed_data/create_collation_info.cpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/parser/parsed_data/create_copy_function_info.cpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/parser/parsed_data/create_index_info.cpp | 11 duckdb-0.8.0/duckdb/src/duckdb/src/parser/parsed_data/create_info.cpp | 27 duckdb-0.8.0/duckdb/src/duckdb/src/parser/parsed_data/create_macro_info.cpp |only duckdb-0.8.0/duckdb/src/duckdb/src/parser/parsed_data/create_pragma_function_info.cpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/parser/parsed_data/create_scalar_function_info.cpp | 7 duckdb-0.8.0/duckdb/src/duckdb/src/parser/parsed_data/create_sequence_info.cpp |only duckdb-0.8.0/duckdb/src/duckdb/src/parser/parsed_data/create_table_function_info.cpp | 8 duckdb-0.8.0/duckdb/src/duckdb/src/parser/parsed_data/create_table_info.cpp | 8 duckdb-0.8.0/duckdb/src/duckdb/src/parser/parsed_data/create_type_info.cpp |only duckdb-0.8.0/duckdb/src/duckdb/src/parser/parsed_data/create_view_info.cpp | 10 duckdb-0.8.0/duckdb/src/duckdb/src/parser/parsed_data/detach_info.cpp |only duckdb-0.8.0/duckdb/src/duckdb/src/parser/parsed_data/drop_info.cpp |only duckdb-0.8.0/duckdb/src/duckdb/src/parser/parsed_data/sample_options.cpp | 36 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| 32 duckdb-0.8.0/duckdb/src/duckdb/src/parser/transform/helpers/transform_groupby.cpp | 15 duckdb-0.8.0/duckdb/src/duckdb/src/parser/transform/helpers/transform_orderby.cpp | 7 duckdb-0.8.0/duckdb/src/duckdb/src/parser/transform/helpers/transform_sample.cpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/parser/transform/helpers/transform_typename.cpp | 5 duckdb-0.8.0/duckdb/src/duckdb/src/parser/transform/statement/transform_alter_sequence.cpp | 9 duckdb-0.8.0/duckdb/src/duckdb/src/parser/transform/statement/transform_alter_table.cpp | 26 duckdb-0.8.0/duckdb/src/duckdb/src/parser/transform/statement/transform_attach.cpp | 4 duckdb-0.8.0/duckdb/src/duckdb/src/parser/transform/statement/transform_call.cpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/parser/transform/statement/transform_checkpoint.cpp | 6 duckdb-0.8.0/duckdb/src/duckdb/src/parser/transform/statement/transform_copy.cpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/parser/transform/statement/transform_create_database.cpp | 4 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duckdb-0.8.0/duckdb/src/duckdb/src/planner/binder/query_node/plan_setop.cpp | 13 duckdb-0.8.0/duckdb/src/duckdb/src/planner/binder/query_node/plan_subquery.cpp | 70 duckdb-0.8.0/duckdb/src/duckdb/src/planner/binder/statement/bind_attach.cpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/planner/binder/statement/bind_call.cpp | 5 duckdb-0.8.0/duckdb/src/duckdb/src/planner/binder/statement/bind_copy.cpp | 76 duckdb-0.8.0/duckdb/src/duckdb/src/planner/binder/statement/bind_create.cpp | 229 duckdb-0.8.0/duckdb/src/duckdb/src/planner/binder/statement/bind_create_table.cpp | 68 duckdb-0.8.0/duckdb/src/duckdb/src/planner/binder/statement/bind_delete.cpp | 20 duckdb-0.8.0/duckdb/src/duckdb/src/planner/binder/statement/bind_detach.cpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/planner/binder/statement/bind_drop.cpp | 10 duckdb-0.8.0/duckdb/src/duckdb/src/planner/binder/statement/bind_execute.cpp | 4 duckdb-0.8.0/duckdb/src/duckdb/src/planner/binder/statement/bind_explain.cpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/planner/binder/statement/bind_export.cpp | 61 duckdb-0.8.0/duckdb/src/duckdb/src/planner/binder/statement/bind_extension.cpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/planner/binder/statement/bind_insert.cpp | 194 duckdb-0.8.0/duckdb/src/duckdb/src/planner/binder/statement/bind_load.cpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/planner/binder/statement/bind_logical_plan.cpp | 17 duckdb-0.8.0/duckdb/src/duckdb/src/planner/binder/statement/bind_pragma.cpp | 10 duckdb-0.8.0/duckdb/src/duckdb/src/planner/binder/statement/bind_prepare.cpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/planner/binder/statement/bind_set.cpp | 8 duckdb-0.8.0/duckdb/src/duckdb/src/planner/binder/statement/bind_show.cpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/planner/binder/statement/bind_simple.cpp | 13 duckdb-0.8.0/duckdb/src/duckdb/src/planner/binder/statement/bind_summarize.cpp | 56 duckdb-0.8.0/duckdb/src/duckdb/src/planner/binder/statement/bind_update.cpp | 56 duckdb-0.8.0/duckdb/src/duckdb/src/planner/binder/statement/bind_vacuum.cpp | 19 duckdb-0.8.0/duckdb/src/duckdb/src/planner/binder/tableref/bind_basetableref.cpp | 85 duckdb-0.8.0/duckdb/src/duckdb/src/planner/binder/tableref/bind_emptytableref.cpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/planner/binder/tableref/bind_expressionlistref.cpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/planner/binder/tableref/bind_joinref.cpp | 72 duckdb-0.8.0/duckdb/src/duckdb/src/planner/binder/tableref/bind_named_parameters.cpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/planner/binder/tableref/bind_pivot.cpp |only duckdb-0.8.0/duckdb/src/duckdb/src/planner/binder/tableref/bind_subqueryref.cpp | 14 duckdb-0.8.0/duckdb/src/duckdb/src/planner/binder/tableref/bind_table_function.cpp | 80 duckdb-0.8.0/duckdb/src/duckdb/src/planner/binder/tableref/plan_cteref.cpp | 3 duckdb-0.8.0/duckdb/src/duckdb/src/planner/binder/tableref/plan_dummytableref.cpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/planner/binder/tableref/plan_expressionlistref.cpp | 6 duckdb-0.8.0/duckdb/src/duckdb/src/planner/binder/tableref/plan_joinref.cpp | 108 duckdb-0.8.0/duckdb/src/duckdb/src/planner/binder/tableref/plan_pivotref.cpp |only duckdb-0.8.0/duckdb/src/duckdb/src/planner/bound_result_modifier.cpp | 28 duckdb-0.8.0/duckdb/src/duckdb/src/planner/expression.cpp | 3 duckdb-0.8.0/duckdb/src/duckdb/src/planner/expression/bound_aggregate_expression.cpp | 33 duckdb-0.8.0/duckdb/src/duckdb/src/planner/expression/bound_between_expression.cpp | 18 duckdb-0.8.0/duckdb/src/duckdb/src/planner/expression/bound_case_expression.cpp | 6 duckdb-0.8.0/duckdb/src/duckdb/src/planner/expression/bound_cast_expression.cpp | 17 duckdb-0.8.0/duckdb/src/duckdb/src/planner/expression/bound_columnref_expression.cpp | 28 duckdb-0.8.0/duckdb/src/duckdb/src/planner/expression/bound_comparison_expression.cpp | 11 duckdb-0.8.0/duckdb/src/duckdb/src/planner/expression/bound_conjunction_expression.cpp | 8 duckdb-0.8.0/duckdb/src/duckdb/src/planner/expression/bound_constant_expression.cpp | 8 duckdb-0.8.0/duckdb/src/duckdb/src/planner/expression/bound_expression.cpp | 17 duckdb-0.8.0/duckdb/src/duckdb/src/planner/expression/bound_function_expression.cpp | 16 duckdb-0.8.0/duckdb/src/duckdb/src/planner/expression/bound_lambda_expression.cpp | 10 duckdb-0.8.0/duckdb/src/duckdb/src/planner/expression/bound_lambdaref_expression.cpp | 10 duckdb-0.8.0/duckdb/src/duckdb/src/planner/expression/bound_operator_expression.cpp | 8 duckdb-0.8.0/duckdb/src/duckdb/src/planner/expression/bound_parameter_expression.cpp | 10 duckdb-0.8.0/duckdb/src/duckdb/src/planner/expression/bound_reference_expression.cpp | 18 duckdb-0.8.0/duckdb/src/duckdb/src/planner/expression/bound_unnest_expression.cpp | 8 duckdb-0.8.0/duckdb/src/duckdb/src/planner/expression/bound_window_expression.cpp | 43 duckdb-0.8.0/duckdb/src/duckdb/src/planner/expression_binder.cpp | 101 duckdb-0.8.0/duckdb/src/duckdb/src/planner/expression_binder/aggregate_binder.cpp | 4 duckdb-0.8.0/duckdb/src/duckdb/src/planner/expression_binder/alter_binder.cpp | 8 duckdb-0.8.0/duckdb/src/duckdb/src/planner/expression_binder/base_select_binder.cpp |only duckdb-0.8.0/duckdb/src/duckdb/src/planner/expression_binder/check_binder.cpp | 14 duckdb-0.8.0/duckdb/src/duckdb/src/planner/expression_binder/column_alias_binder.cpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/planner/expression_binder/constant_binder.cpp | 16 duckdb-0.8.0/duckdb/src/duckdb/src/planner/expression_binder/group_binder.cpp | 12 duckdb-0.8.0/duckdb/src/duckdb/src/planner/expression_binder/having_binder.cpp | 19 duckdb-0.8.0/duckdb/src/duckdb/src/planner/expression_binder/index_binder.cpp | 11 duckdb-0.8.0/duckdb/src/duckdb/src/planner/expression_binder/insert_binder.cpp | 4 duckdb-0.8.0/duckdb/src/duckdb/src/planner/expression_binder/lateral_binder.cpp | 12 duckdb-0.8.0/duckdb/src/duckdb/src/planner/expression_binder/order_binder.cpp | 16 duckdb-0.8.0/duckdb/src/duckdb/src/planner/expression_binder/qualify_binder.cpp | 17 duckdb-0.8.0/duckdb/src/duckdb/src/planner/expression_binder/relation_binder.cpp | 4 duckdb-0.8.0/duckdb/src/duckdb/src/planner/expression_binder/returning_binder.cpp | 4 duckdb-0.8.0/duckdb/src/duckdb/src/planner/expression_binder/select_binder.cpp | 133 duckdb-0.8.0/duckdb/src/duckdb/src/planner/expression_binder/table_function_binder.cpp | 16 duckdb-0.8.0/duckdb/src/duckdb/src/planner/expression_binder/update_binder.cpp | 4 duckdb-0.8.0/duckdb/src/duckdb/src/planner/expression_binder/where_binder.cpp | 11 duckdb-0.8.0/duckdb/src/duckdb/src/planner/expression_iterator.cpp | 61 duckdb-0.8.0/duckdb/src/duckdb/src/planner/filter/conjunction_filter.cpp | 4 duckdb-0.8.0/duckdb/src/duckdb/src/planner/filter/constant_filter.cpp | 12 duckdb-0.8.0/duckdb/src/duckdb/src/planner/filter/null_filter.cpp | 4 duckdb-0.8.0/duckdb/src/duckdb/src/planner/joinside.cpp | 10 duckdb-0.8.0/duckdb/src/duckdb/src/planner/logical_operator.cpp | 15 duckdb-0.8.0/duckdb/src/duckdb/src/planner/logical_operator_visitor.cpp | 58 duckdb-0.8.0/duckdb/src/duckdb/src/planner/operator/logical_aggregate.cpp | 18 duckdb-0.8.0/duckdb/src/duckdb/src/planner/operator/logical_any_join.cpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/planner/operator/logical_asof_join.cpp |only duckdb-0.8.0/duckdb/src/duckdb/src/planner/operator/logical_column_data_get.cpp | 15 duckdb-0.8.0/duckdb/src/duckdb/src/planner/operator/logical_comparison_join.cpp | 10 duckdb-0.8.0/duckdb/src/duckdb/src/planner/operator/logical_copy_to_file.cpp | 15 duckdb-0.8.0/duckdb/src/duckdb/src/planner/operator/logical_create.cpp | 4 duckdb-0.8.0/duckdb/src/duckdb/src/planner/operator/logical_create_index.cpp | 41 duckdb-0.8.0/duckdb/src/duckdb/src/planner/operator/logical_create_table.cpp | 4 duckdb-0.8.0/duckdb/src/duckdb/src/planner/operator/logical_cross_product.cpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/planner/operator/logical_cteref.cpp | 13 duckdb-0.8.0/duckdb/src/duckdb/src/planner/operator/logical_delete.cpp | 28 duckdb-0.8.0/duckdb/src/duckdb/src/planner/operator/logical_delim_get.cpp | 15 duckdb-0.8.0/duckdb/src/duckdb/src/planner/operator/logical_delim_join.cpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/planner/operator/logical_distinct.cpp | 7 duckdb-0.8.0/duckdb/src/duckdb/src/planner/operator/logical_dummy_scan.cpp | 15 duckdb-0.8.0/duckdb/src/duckdb/src/planner/operator/logical_expression_get.cpp | 15 duckdb-0.8.0/duckdb/src/duckdb/src/planner/operator/logical_filter.cpp | 4 duckdb-0.8.0/duckdb/src/duckdb/src/planner/operator/logical_get.cpp | 18 duckdb-0.8.0/duckdb/src/duckdb/src/planner/operator/logical_insert.cpp | 63 duckdb-0.8.0/duckdb/src/duckdb/src/planner/operator/logical_join.cpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/planner/operator/logical_limit.cpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/planner/operator/logical_limit_percent.cpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/planner/operator/logical_order.cpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/planner/operator/logical_pivot.cpp |only duckdb-0.8.0/duckdb/src/duckdb/src/planner/operator/logical_positional_join.cpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/planner/operator/logical_projection.cpp | 13 duckdb-0.8.0/duckdb/src/duckdb/src/planner/operator/logical_recursive_cte.cpp | 13 duckdb-0.8.0/duckdb/src/duckdb/src/planner/operator/logical_reset.cpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/planner/operator/logical_sample.cpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/planner/operator/logical_set.cpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/planner/operator/logical_set_operation.cpp | 11 duckdb-0.8.0/duckdb/src/duckdb/src/planner/operator/logical_simple.cpp | 40 duckdb-0.8.0/duckdb/src/duckdb/src/planner/operator/logical_top_n.cpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/planner/operator/logical_unnest.cpp | 15 duckdb-0.8.0/duckdb/src/duckdb/src/planner/operator/logical_update.cpp | 31 duckdb-0.8.0/duckdb/src/duckdb/src/planner/operator/logical_window.cpp | 13 duckdb-0.8.0/duckdb/src/duckdb/src/planner/parsed_data/bound_create_table_info.cpp | 44 duckdb-0.8.0/duckdb/src/duckdb/src/planner/planner.cpp | 20 duckdb-0.8.0/duckdb/src/duckdb/src/planner/pragma_handler.cpp | 33 duckdb-0.8.0/duckdb/src/duckdb/src/planner/subquery/flatten_dependent_join.cpp | 124 duckdb-0.8.0/duckdb/src/duckdb/src/planner/subquery/rewrite_correlated_expressions.cpp | 11 duckdb-0.8.0/duckdb/src/duckdb/src/planner/table_binding.cpp | 35 duckdb-0.8.0/duckdb/src/duckdb/src/planner/table_filter.cpp | 4 duckdb-0.8.0/duckdb/src/duckdb/src/storage/arena_allocator.cpp | 36 duckdb-0.8.0/duckdb/src/duckdb/src/storage/buffer/block_handle.cpp |only duckdb-0.8.0/duckdb/src/duckdb/src/storage/buffer/block_manager.cpp |only duckdb-0.8.0/duckdb/src/duckdb/src/storage/buffer/buffer_handle.cpp | 14 duckdb-0.8.0/duckdb/src/duckdb/src/storage/buffer/buffer_pool.cpp |only duckdb-0.8.0/duckdb/src/duckdb/src/storage/buffer/buffer_pool_reservation.cpp |only duckdb-0.8.0/duckdb/src/duckdb/src/storage/buffer_manager.cpp | 1114 duckdb-0.8.0/duckdb/src/duckdb/src/storage/checkpoint/row_group_writer.cpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/storage/checkpoint/table_data_reader.cpp | 21 duckdb-0.8.0/duckdb/src/duckdb/src/storage/checkpoint/table_data_writer.cpp | 20 duckdb-0.8.0/duckdb/src/duckdb/src/storage/checkpoint/write_overflow_strings_to_disk.cpp | 6 duckdb-0.8.0/duckdb/src/duckdb/src/storage/checkpoint_manager.cpp | 174 duckdb-0.8.0/duckdb/src/duckdb/src/storage/compression/bitpacking.cpp | 69 duckdb-0.8.0/duckdb/src/duckdb/src/storage/compression/dictionary_compression.cpp | 25 duckdb-0.8.0/duckdb/src/duckdb/src/storage/compression/fixed_size_uncompressed.cpp | 99 duckdb-0.8.0/duckdb/src/duckdb/src/storage/compression/fsst.cpp | 32 duckdb-0.8.0/duckdb/src/duckdb/src/storage/compression/numeric_constant.cpp | 21 duckdb-0.8.0/duckdb/src/duckdb/src/storage/compression/patas.cpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/storage/compression/rle.cpp | 49 duckdb-0.8.0/duckdb/src/duckdb/src/storage/compression/string_uncompressed.cpp | 14 duckdb-0.8.0/duckdb/src/duckdb/src/storage/compression/validity_uncompressed.cpp | 18 duckdb-0.8.0/duckdb/src/duckdb/src/storage/data_table.cpp | 240 duckdb-0.8.0/duckdb/src/duckdb/src/storage/index.cpp | 42 duckdb-0.8.0/duckdb/src/duckdb/src/storage/local_storage.cpp | 327 duckdb-0.8.0/duckdb/src/duckdb/src/storage/meta_block_reader.cpp | 23 duckdb-0.8.0/duckdb/src/duckdb/src/storage/meta_block_writer.cpp | 4 duckdb-0.8.0/duckdb/src/duckdb/src/storage/optimistic_data_writer.cpp |only duckdb-0.8.0/duckdb/src/duckdb/src/storage/partial_block_manager.cpp | 95 duckdb-0.8.0/duckdb/src/duckdb/src/storage/single_file_block_manager.cpp | 31 duckdb-0.8.0/duckdb/src/duckdb/src/storage/standard_buffer_manager.cpp |only duckdb-0.8.0/duckdb/src/duckdb/src/storage/statistics/base_statistics.cpp | 510 duckdb-0.8.0/duckdb/src/duckdb/src/storage/statistics/column_statistics.cpp | 60 duckdb-0.8.0/duckdb/src/duckdb/src/storage/statistics/distinct_statistics.cpp | 21 duckdb-0.8.0/duckdb/src/duckdb/src/storage/statistics/list_stats.cpp |only duckdb-0.8.0/duckdb/src/duckdb/src/storage/statistics/numeric_stats.cpp |only duckdb-0.8.0/duckdb/src/duckdb/src/storage/statistics/numeric_stats_union.cpp |only duckdb-0.8.0/duckdb/src/duckdb/src/storage/statistics/segment_statistics.cpp | 13 duckdb-0.8.0/duckdb/src/duckdb/src/storage/statistics/string_stats.cpp |only duckdb-0.8.0/duckdb/src/duckdb/src/storage/statistics/struct_stats.cpp |only duckdb-0.8.0/duckdb/src/duckdb/src/storage/storage_info.cpp | 4 duckdb-0.8.0/duckdb/src/duckdb/src/storage/storage_lock.cpp | 4 duckdb-0.8.0/duckdb/src/duckdb/src/storage/storage_manager.cpp | 49 duckdb-0.8.0/duckdb/src/duckdb/src/storage/table/chunk_info.cpp | 4 duckdb-0.8.0/duckdb/src/duckdb/src/storage/table/column_checkpoint_state.cpp | 182 duckdb-0.8.0/duckdb/src/duckdb/src/storage/table/column_data.cpp | 234 duckdb-0.8.0/duckdb/src/duckdb/src/storage/table/column_data_checkpointer.cpp | 55 duckdb-0.8.0/duckdb/src/duckdb/src/storage/table/column_segment.cpp | 128 duckdb-0.8.0/duckdb/src/duckdb/src/storage/table/list_column_data.cpp | 144 duckdb-0.8.0/duckdb/src/duckdb/src/storage/table/persistent_table_data.cpp | 3 duckdb-0.8.0/duckdb/src/duckdb/src/storage/table/row_group.cpp | 395 duckdb-0.8.0/duckdb/src/duckdb/src/storage/table/row_group_collection.cpp | 332 duckdb-0.8.0/duckdb/src/duckdb/src/storage/table/scan_state.cpp | 80 duckdb-0.8.0/duckdb/src/duckdb/src/storage/table/standard_column_data.cpp | 43 duckdb-0.8.0/duckdb/src/duckdb/src/storage/table/struct_column_data.cpp | 87 duckdb-0.8.0/duckdb/src/duckdb/src/storage/table/table_statistics.cpp | 36 duckdb-0.8.0/duckdb/src/duckdb/src/storage/table/update_segment.cpp | 95 duckdb-0.8.0/duckdb/src/duckdb/src/storage/table/validity_column_data.cpp | 8 duckdb-0.8.0/duckdb/src/duckdb/src/storage/table_index_list.cpp | 6 duckdb-0.8.0/duckdb/src/duckdb/src/storage/wal_replay.cpp | 75 duckdb-0.8.0/duckdb/src/duckdb/src/storage/write_ahead_log.cpp | 94 duckdb-0.8.0/duckdb/src/duckdb/src/transaction/cleanup_state.cpp | 28 duckdb-0.8.0/duckdb/src/duckdb/src/transaction/commit_state.cpp | 141 duckdb-0.8.0/duckdb/src/duckdb/src/transaction/duck_transaction.cpp | 19 duckdb-0.8.0/duckdb/src/duckdb/src/transaction/duck_transaction_manager.cpp | 8 duckdb-0.8.0/duckdb/src/duckdb/src/transaction/meta_transaction.cpp | 26 duckdb-0.8.0/duckdb/src/duckdb/src/transaction/rollback_state.cpp | 4 duckdb-0.8.0/duckdb/src/duckdb/src/transaction/transaction.cpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/transaction/transaction_context.cpp | 4 duckdb-0.8.0/duckdb/src/duckdb/src/transaction/undo_buffer.cpp | 11 duckdb-0.8.0/duckdb/src/duckdb/src/verification/copied_statement_verifier.cpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/verification/deserialized_statement_verifier.cpp | 8 duckdb-0.8.0/duckdb/src/duckdb/src/verification/deserialized_statement_verifier_v2.cpp |only duckdb-0.8.0/duckdb/src/duckdb/src/verification/external_statement_verifier.cpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/verification/no_operator_caching_verifier.cpp |only duckdb-0.8.0/duckdb/src/duckdb/src/verification/parsed_statement_verifier.cpp | 2 duckdb-0.8.0/duckdb/src/duckdb/src/verification/prepared_statement_verifier.cpp | 14 duckdb-0.8.0/duckdb/src/duckdb/src/verification/statement_verifier.cpp | 13 duckdb-0.8.0/duckdb/src/duckdb/src/verification/unoptimized_statement_verifier.cpp | 2 duckdb-0.8.0/duckdb/src/duckdb/third_party/fmt/format.cc | 5 duckdb-0.8.0/duckdb/src/duckdb/third_party/fmt/include/fmt/core.h | 22 duckdb-0.8.0/duckdb/src/duckdb/third_party/fmt/include/fmt/format-inl.h | 35 duckdb-0.8.0/duckdb/src/duckdb/third_party/fmt/include/fmt/format.h | 85 duckdb-0.8.0/duckdb/src/duckdb/third_party/fmt/include/fmt/printf.h | 16 duckdb-0.8.0/duckdb/src/duckdb/third_party/fsst/libfsst.cpp | 3 duckdb-0.8.0/duckdb/src/duckdb/third_party/libpg_query/include/nodes/nodes.hpp | 44 duckdb-0.8.0/duckdb/src/duckdb/third_party/libpg_query/include/nodes/parsenodes.hpp | 64 duckdb-0.8.0/duckdb/src/duckdb/third_party/libpg_query/include/nodes/primnodes.hpp | 4 duckdb-0.8.0/duckdb/src/duckdb/third_party/libpg_query/include/parser/gram.hpp | 1535 duckdb-0.8.0/duckdb/src/duckdb/third_party/libpg_query/include/parser/kwlist.hpp | 20 duckdb-0.8.0/duckdb/src/duckdb/third_party/libpg_query/include/postgres_parser.hpp | 5 duckdb-0.8.0/duckdb/src/duckdb/third_party/libpg_query/postgres_parser.cpp | 11 duckdb-0.8.0/duckdb/src/duckdb/third_party/libpg_query/src_backend_parser_gram.cpp |46425 +++++----- duckdb-0.8.0/duckdb/src/duckdb/third_party/libpg_query/src_backend_parser_scan.cpp | 992 duckdb-0.8.0/duckdb/src/duckdb/third_party/parquet/parquet_types.cpp | 64 duckdb-0.8.0/duckdb/src/duckdb/third_party/parquet/parquet_types.h | 66 duckdb-0.8.0/duckdb/src/duckdb/third_party/re2/re2/re2.cc | 9 duckdb-0.8.0/duckdb/src/duckdb/third_party/re2/re2/re2.h | 2 duckdb-0.8.0/duckdb/src/duckdb/third_party/thrift/thrift/TToString.h | 6 duckdb-0.8.0/duckdb/src/duckdb/third_party/thrift/thrift/protocol/TProtocol.h | 2 duckdb-0.8.0/duckdb/src/duckdb/third_party/thrift/thrift/protocol/TProtocolDecorator.h | 3 duckdb-0.8.0/duckdb/src/duckdb/third_party/thrift/thrift/protocol/TVirtualProtocol.h | 9 duckdb-0.8.0/duckdb/src/duckdb/third_party/utf8proc/include/utf8proc_wrapper.hpp | 1 duckdb-0.8.0/duckdb/src/duckdb/ub_src_catalog_catalog_entry.cpp | 2 duckdb-0.8.0/duckdb/src/duckdb/ub_src_common.cpp | 6 duckdb-0.8.0/duckdb/src/duckdb/ub_src_common_adbc.cpp |only duckdb-0.8.0/duckdb/src/duckdb/ub_src_common_enums.cpp | 2 duckdb-0.8.0/duckdb/src/duckdb/ub_src_common_serializer.cpp | 4 duckdb-0.8.0/duckdb/src/duckdb/ub_src_common_sort.cpp | 2 duckdb-0.8.0/duckdb/src/duckdb/ub_src_common_types.cpp | 16 duckdb-0.8.0/duckdb/src/duckdb/ub_src_common_types_column.cpp |only duckdb-0.8.0/duckdb/src/duckdb/ub_src_common_types_row.cpp |only duckdb-0.8.0/duckdb/src/duckdb/ub_src_core_functions.cpp |only duckdb-0.8.0/duckdb/src/duckdb/ub_src_core_functions_aggregate_algebraic.cpp |only duckdb-0.8.0/duckdb/src/duckdb/ub_src_core_functions_aggregate_distributive.cpp |only duckdb-0.8.0/duckdb/src/duckdb/ub_src_core_functions_aggregate_holistic.cpp |only duckdb-0.8.0/duckdb/src/duckdb/ub_src_core_functions_aggregate_nested.cpp |only duckdb-0.8.0/duckdb/src/duckdb/ub_src_core_functions_aggregate_regression.cpp |only duckdb-0.8.0/duckdb/src/duckdb/ub_src_core_functions_scalar_bit.cpp |only duckdb-0.8.0/duckdb/src/duckdb/ub_src_core_functions_scalar_blob.cpp |only duckdb-0.8.0/duckdb/src/duckdb/ub_src_core_functions_scalar_date.cpp |only duckdb-0.8.0/duckdb/src/duckdb/ub_src_core_functions_scalar_enum.cpp |only duckdb-0.8.0/duckdb/src/duckdb/ub_src_core_functions_scalar_generic.cpp |only duckdb-0.8.0/duckdb/src/duckdb/ub_src_core_functions_scalar_list.cpp |only duckdb-0.8.0/duckdb/src/duckdb/ub_src_core_functions_scalar_map.cpp |only duckdb-0.8.0/duckdb/src/duckdb/ub_src_core_functions_scalar_math.cpp |only duckdb-0.8.0/duckdb/src/duckdb/ub_src_core_functions_scalar_operators.cpp |only duckdb-0.8.0/duckdb/src/duckdb/ub_src_core_functions_scalar_random.cpp |only duckdb-0.8.0/duckdb/src/duckdb/ub_src_core_functions_scalar_string.cpp |only duckdb-0.8.0/duckdb/src/duckdb/ub_src_core_functions_scalar_struct.cpp |only duckdb-0.8.0/duckdb/src/duckdb/ub_src_core_functions_scalar_union.cpp |only duckdb-0.8.0/duckdb/src/duckdb/ub_src_execution_index_art.cpp | 8 duckdb-0.8.0/duckdb/src/duckdb/ub_src_execution_operator_join.cpp | 2 duckdb-0.8.0/duckdb/src/duckdb/ub_src_execution_operator_persistent.cpp | 6 duckdb-0.8.0/duckdb/src/duckdb/ub_src_execution_operator_projection.cpp | 2 duckdb-0.8.0/duckdb/src/duckdb/ub_src_execution_physical_plan.cpp | 4 duckdb-0.8.0/duckdb/src/duckdb/ub_src_function_aggregate.cpp | 8 duckdb-0.8.0/duckdb/src/duckdb/ub_src_function_aggregate_distributive.cpp | 22 duckdb-0.8.0/duckdb/src/duckdb/ub_src_function_scalar.cpp | 10 duckdb-0.8.0/duckdb/src/duckdb/ub_src_function_scalar_generic.cpp | 12 duckdb-0.8.0/duckdb/src/duckdb/ub_src_function_scalar_list.cpp | 14 duckdb-0.8.0/duckdb/src/duckdb/ub_src_function_scalar_operators.cpp | 2 duckdb-0.8.0/duckdb/src/duckdb/ub_src_function_scalar_string.cpp | 38 duckdb-0.8.0/duckdb/src/duckdb/ub_src_function_scalar_string_regexp.cpp |only duckdb-0.8.0/duckdb/src/duckdb/ub_src_function_scalar_struct.cpp | 4 duckdb-0.8.0/duckdb/src/duckdb/ub_src_function_scalar_system.cpp | 2 duckdb-0.8.0/duckdb/src/duckdb/ub_src_function_table.cpp | 2 duckdb-0.8.0/duckdb/src/duckdb/ub_src_main.cpp | 2 duckdb-0.8.0/duckdb/src/duckdb/ub_src_main_capi.cpp | 2 duckdb-0.8.0/duckdb/src/duckdb/ub_src_main_extension.cpp | 2 duckdb-0.8.0/duckdb/src/duckdb/ub_src_optimizer_rule.cpp | 2 duckdb-0.8.0/duckdb/src/duckdb/ub_src_parallel.cpp | 2 duckdb-0.8.0/duckdb/src/duckdb/ub_src_parser.cpp | 2 duckdb-0.8.0/duckdb/src/duckdb/ub_src_parser_parsed_data.cpp | 22 duckdb-0.8.0/duckdb/src/duckdb/ub_src_parser_statement.cpp | 2 duckdb-0.8.0/duckdb/src/duckdb/ub_src_parser_tableref.cpp | 2 duckdb-0.8.0/duckdb/src/duckdb/ub_src_parser_transform_expression.cpp | 2 duckdb-0.8.0/duckdb/src/duckdb/ub_src_parser_transform_statement.cpp | 2 duckdb-0.8.0/duckdb/src/duckdb/ub_src_parser_transform_tableref.cpp | 2 duckdb-0.8.0/duckdb/src/duckdb/ub_src_planner_binder_expression.cpp | 2 duckdb-0.8.0/duckdb/src/duckdb/ub_src_planner_binder_tableref.cpp | 4 duckdb-0.8.0/duckdb/src/duckdb/ub_src_planner_expression_binder.cpp | 2 duckdb-0.8.0/duckdb/src/duckdb/ub_src_planner_operator.cpp | 4 duckdb-0.8.0/duckdb/src/duckdb/ub_src_storage.cpp | 4 duckdb-0.8.0/duckdb/src/duckdb/ub_src_storage_buffer.cpp | 8 duckdb-0.8.0/duckdb/src/duckdb/ub_src_storage_statistics.cpp | 12 duckdb-0.8.0/duckdb/src/duckdb/ub_src_storage_table.cpp | 2 duckdb-0.8.0/duckdb/src/include/rapi.hpp | 33 duckdb-0.8.0/duckdb/src/include/typesr.hpp | 16 duckdb-0.8.0/duckdb/src/register.cpp | 65 duckdb-0.8.0/duckdb/src/relational.cpp | 179 duckdb-0.8.0/duckdb/src/reltoaltrep.cpp | 8 duckdb-0.8.0/duckdb/src/scan.cpp | 72 duckdb-0.8.0/duckdb/src/statement.cpp | 16 duckdb-0.8.0/duckdb/src/transform.cpp | 52 duckdb-0.8.0/duckdb/src/types.cpp | 16 duckdb-0.8.0/duckdb/src/utils.cpp | 6 duckdb-0.8.0/duckdb/tests/testthat/test-rel_api.R |only duckdb-0.8.0/duckdb/tests/testthat/test_fetch_arrow.R | 5 duckdb-0.8.0/duckdb/tests/testthat/test_register.R | 2 duckdb-0.8.0/duckdb/tests/testthat/test_relational.R | 376 duckdb-0.8.0/duckdb/tests/testthat/test_tbl__duckdb_connection.R | 9 1794 files changed, 58554 insertions(+), 48390 deletions(-)
Title: Estimating Dynamic Heritability and Twin Model Comparison
Description: Twin models that are able to estimate the dynamic behaviour of the variance components in the classical twin models with respect to age using B-splines and P-splines.
Author: Liang He
Maintainer: Liang He <hyx520101@gmail.com>
Diff between ACEt versions 1.8.2 dated 2022-09-26 and 1.9.0 dated 2023-05-23
DESCRIPTION | 10 +- MD5 | 33 +++--- NAMESPACE | 1 R/AtCtEt.R | 54 ++--------- R/AtCtEt_boot.R | 136 ++++++++++++++++++++++++++++ R/AtCtEt_esp.R | 29 +++++ R/AtDtEt.R |only R/plot_AtCtEt.R | 188 ++++++++++++++++++++++++++++++++++++++ R/plot_AtCtEt_h.R | 136 +++++++++++++++++++++++++++- R/plot_acet.R | 22 +++- build/vignette.rds |binary inst/doc/acet-vignette.R | 9 + inst/doc/acet-vignette.Rmd | 23 +++- inst/doc/acet-vignette.html | 213 +++++++++++++++++++++----------------------- man/AtCtEt.Rd | 4 man/AtDtEt.Rd |only src/AtDtEt.cpp |only src/packagename_init.c | 6 + vignettes/acet-vignette.Rmd | 23 +++- 19 files changed, 689 insertions(+), 198 deletions(-)
Title: Hierarchical and Variation Partitioning for Canonical Analysis
Description: This function conducts variation partitioning and hierarchical partitioning to calculate the unique, shared (referred as to "common") and individual contributions of each predictor (or matrix) towards explained variation (R-square and adjusted R-square) on canonical analysis (RDA,CCA and db-RDA), applying the algorithm of Lai J.,Zou Y., Zhang J.,Peres-Neto P.(2022) Generalizing hierarchical and variation partitioning in multiple regression and canonical analyses using the rdacca.hp R package.Methods in Ecology and Evolution,13: 782-788 <DOI:10.1111/2041-210X.13800>.
Author: Jiangshan Lai,Yao Liu,Pedro Peres-Neto,Kim Nimon
Maintainer: Jiangshan Lai <lai@njfu.edu.cn>
Diff between rdacca.hp versions 1.0-9 dated 2023-02-09 and 1.1-0 dated 2023-05-23
DESCRIPTION | 10 +++++----- MD5 | 12 ++++++------ NAMESPACE | 1 + R/plot.rdaccahp.r | 32 +++++++++++++++++++++++++++----- R/rdacca.hp.r | 22 +++++++++------------- inst/CITATION | 4 ++-- man/plot.rdaccahp.Rd | 10 ++++++++-- 7 files changed, 58 insertions(+), 33 deletions(-)
Title: Plot and Manipulate Multigraphs
Description: Functions to plot and manipulate multigraphs, signed and valued graphs, bipartite graphs, multilevel graphs, and Cayley graphs with various layout options.
Author: Antonio Rivero Ostoic [aut, cre]
Maintainer: Antonio Rivero Ostoic <multiplex@post.com>
Diff between multigraph versions 0.97-2 dated 2022-07-07 and 0.98 dated 2023-05-23
DESCRIPTION | 10 ++--- MD5 | 12 +++--- R/ccgraph.R | 27 ++++++++++----- R/multigraph.R | 52 +++++++++++++++++++++++------ man/ccgraph.Rd | 23 ++++++------- man/multigraph-package.Rd | 10 ++--- man/multigraph.Rd | 80 +++++++++++++++++++++------------------------- 7 files changed, 125 insertions(+), 89 deletions(-)
Title: Interface for the 'Finnish Biodiversity Information Facility'
API
Description: A programmatic interface to the 'Finnish Biodiversity Information
Facility' ('FinBIF') API (<https://api.laji.fi>). 'FinBIF' aggregates
Finnish biodiversity data from multiple sources in a single open access
portal for researchers, citizen scientists, industry and government.
'FinBIF' allows users of biodiversity information to find, access, combine
and visualise data on Finnish plants, animals and microorganisms. The
'finbif' package makes the publicly available data in 'FinBIF' easily
accessible to programmers. Biodiversity information is available on taxonomy
and taxon occurrence. Occurrence data can be filtered by taxon, time,
location and other variables. The data accessed are conveniently
preformatted for subsequent analyses.
Author: Finnish Museum of Natural History - Luomus [cph],
William K. Morris [aut, cre]
Maintainer: William K. Morris <willi@mmorris.email>
Diff between finbif versions 0.8.0 dated 2023-03-29 and 0.9.0 dated 2023-05-23
finbif-0.8.0/finbif/R/data.R |only finbif-0.8.0/finbif/R/map-utils.R |only finbif-0.8.0/finbif/data |only finbif-0.8.0/finbif/inst/doc/v06_plotting.Rmd |only finbif-0.8.0/finbif/inst/doc/v06_plotting.html |only finbif-0.8.0/finbif/man/as.data.frame.finbif_records.Rd |only finbif-0.8.0/finbif/man/breaks_xy.Rd |only finbif-0.8.0/finbif/man/figures/location-filter-1.png |only finbif-0.8.0/finbif/man/figures/plot-finland-1.png |only finbif-0.8.0/finbif/man/figures/plot-occurrences-eval-1.png |only finbif-0.8.0/finbif/man/figures/plot-recent-obs-1.png |only finbif-0.8.0/finbif/man/finbif_records.Rd |only finbif-0.8.0/finbif/man/finland_map.Rd |only finbif-0.8.0/finbif/man/hist_xy.Rd |only finbif-0.8.0/finbif/tests/testthat/_snaps/finbif_occurrence |only finbif-0.8.0/finbif/tests/testthat/test-finbif_records.R |only finbif-0.8.0/finbif/tests/testthat/test-map-utils.R |only finbif-0.8.0/finbif/tests/write-files/finbif_cache_file_1571d33d6deb0431188fc3d56cdc8bbd |only finbif-0.8.0/finbif/tests/write-files/finbif_cache_file_3db6439c7601e4401b8a27a2094919a3 |only finbif-0.8.0/finbif/vignettes/v06_plotting.Rmd |only finbif-0.9.0/finbif/DESCRIPTION | 13 finbif-0.9.0/finbif/MD5 | 128 finbif-0.9.0/finbif/NAMESPACE | 14 finbif-0.9.0/finbif/NEWS.md | 43 finbif-0.9.0/finbif/R/api_get.R | 421 ++- finbif-0.9.0/finbif/R/caching.R | 46 finbif-0.9.0/finbif/R/coords.R | 24 finbif-0.9.0/finbif/R/dates.R | 221 - finbif-0.9.0/finbif/R/finbif-package.R | 4 finbif-0.9.0/finbif/R/finbif_check_taxa.R | 44 finbif-0.9.0/finbif/R/finbif_clear_cache.R | 22 finbif-0.9.0/finbif/R/finbif_collections.R | 273 -- finbif-0.9.0/finbif/R/finbif_informal_groups.R | 92 finbif-0.9.0/finbif/R/finbif_metadata.R | 435 --- finbif-0.9.0/finbif/R/finbif_occurrence.R | 1150 +++----- finbif-0.9.0/finbif/R/finbif_occurrence_load.R | 1113 ++------ finbif-0.9.0/finbif/R/finbif_records.R | 1344 +++------- finbif-0.9.0/finbif/R/finbif_request_token.R | 118 finbif-0.9.0/finbif/R/finbif_taxa.R | 28 finbif-0.9.0/finbif/R/finbif_update_cache.R |only finbif-0.9.0/finbif/R/methods.R | 777 ----- finbif-0.9.0/finbif/R/sysdata.R | 426 +-- finbif-0.9.0/finbif/R/sysdata.rda |binary finbif-0.9.0/finbif/R/to_dwc.R |only finbif-0.9.0/finbif/R/utils.R | 409 --- finbif-0.9.0/finbif/R/zzz.R | 28 finbif-0.9.0/finbif/README.md | 3 finbif-0.9.0/finbif/build/vignette.rds |binary finbif-0.9.0/finbif/inst/NEWS.Rd | 42 finbif-0.9.0/finbif/inst/doc/finbif.Rmd | 57 finbif-0.9.0/finbif/inst/doc/finbif.html | 58 finbif-0.9.0/finbif/inst/doc/v05_filtering.Rmd | 50 finbif-0.9.0/finbif/inst/doc/v05_filtering.html | 578 ++-- finbif-0.9.0/finbif/man/caching.Rd | 12 finbif-0.9.0/finbif/man/finbif-package.Rd | 4 finbif-0.9.0/finbif/man/finbif_check_taxa.Rd | 4 finbif-0.9.0/finbif/man/finbif_collections.Rd | 4 finbif-0.9.0/finbif/man/finbif_metadata.Rd | 8 finbif-0.9.0/finbif/man/finbif_occurrence.Rd | 21 finbif-0.9.0/finbif/man/finbif_occurrence_load.Rd | 4 finbif-0.9.0/finbif/man/finbif_taxa.Rd | 4 finbif-0.9.0/finbif/man/finbif_update_cache.Rd |only finbif-0.9.0/finbif/man/to_dwc.Rd | 2 finbif-0.9.0/finbif/tests/testthat/_snaps/finbif_occurrence_load.md | 275 ++ finbif-0.9.0/finbif/tests/testthat/helper-finbif.R | 2 finbif-0.9.0/finbif/tests/testthat/test-finbif_api_get.R | 7 finbif-0.9.0/finbif/tests/testthat/test-finbif_collections.R | 11 finbif-0.9.0/finbif/tests/testthat/test-finbif_dates.R | 17 finbif-0.9.0/finbif/tests/testthat/test-finbif_occurrence-db.R |only finbif-0.9.0/finbif/tests/testthat/test-finbif_occurrence.R | 119 finbif-0.9.0/finbif/tests/testthat/test-finbif_occurrence_load.R | 51 finbif-0.9.0/finbif/tests/testthat/test-metadata.R | 60 finbif-0.9.0/finbif/tests/testthat/test-sysdata.R | 36 finbif-0.9.0/finbif/tests/testthat/test-utils.R | 14 finbif-0.9.0/finbif/tests/write-files/finbif_dwnld_cache_file_1571d33d6deb0431188fc3d56cdc8bbd |only finbif-0.9.0/finbif/tests/write-files/finbif_dwnld_cache_file_3db6439c7601e4401b8a27a2094919a3 |only finbif-0.9.0/finbif/vignettes/finbif.Rmd | 57 finbif-0.9.0/finbif/vignettes/v05_filtering.Rmd | 50 78 files changed, 3305 insertions(+), 5418 deletions(-)
Title: Spatial and Spatio-Temporal Semiparametric Regression Models
with Spatial Lags
Description: Estimation and inference of spatial and spatio-temporal
semiparametric models including spatial or spatio-temporal non-parametric
trends, parametric and non-parametric covariates and, possibly, a spatial
lag for the dependent variable and temporal correlation in the noise.
The spatio-temporal trend can be decomposed in ANOVA way including main and
interaction functional terms. Use of SAP algorithm to estimate the spatial
or spatio-temporal trend and non-parametric covariates. The methodology of
these models can be found in next references
Basile, R. et al. (2014), <doi:10.1016/j.jedc.2014.06.011>;
Rodriguez-Alvarez, M.X. et al. (2015) <doi:10.1007/s11222-014-9464-2> and,
particularly referred to the focus of the package, Minguez, R.,
Basile, R. and Durban, M. (2020) <doi:10.1007/s10260-019-00492-8>.
Author: Roman Minguez [aut, cre] ,
Roberto Basile [aut] ,
Maria Durban [aut] ,
Gonzalo Espana-Heredia [aut]
Maintainer: Roman Minguez <roman.minguez@uclm.es>
Diff between pspatreg versions 1.0.9 dated 2023-04-14 and 1.1.0 dated 2023-05-23
DESCRIPTION | 8 +++--- MD5 | 14 +++++----- R/impactsnopar.R | 51 +++++++++++++++++++++------------------- R/plot_impactsnopar.R | 4 ++- R/plot_sp2d.R | 6 ++-- R/summary.pspatreg.R | 12 +++++++-- inst/doc/A_pspatregPackage.html | 4 +-- man/impactsnopar.Rd | 5 +++ 8 files changed, 62 insertions(+), 42 deletions(-)
Title: Preformatted Maps of Norway that Don't Need Geolibraries
Description: Provides datasets containing preformatted maps of Norway at
the county, municipality, and ward (Oslo only) level for redistricting in
2024, 2020, 2018, and 2017. Multiple layouts are provided (normal, split,
and with an insert for Oslo), allowing the user to rapidly create choropleth
maps of Norway without any geolibraries.
Author: Richard Aubrey White [aut, cre]
,
Chi Zhang [aut] ,
Geonorge [ctb],
CSIDS [cph]
Maintainer: Richard Aubrey White <hello@rwhite.no>
Diff between csmaps versions 2022.12.15 dated 2022-12-14 and 2023.5.22 dated 2023-05-23
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Title: Weighting for Covariate Balance in Observational Studies
Description: Generates balancing weights for causal effect estimation in observational studies with
binary, multi-category, or continuous point or longitudinal treatments by easing and
extending the functionality of several R packages and providing in-house estimation methods.
Available methods include propensity score weighting using generalized linear models, gradient
boosting machines, the covariate balancing propensity score algorithm, Bayesian additive regression trees, and
SuperLearner, and directly estimating balancing weights using entropy balancing, energy balancing, and optimization-based weights. Also
allows for assessment of weights and checking of covariate balance by interfacing directly
with the 'cobalt' package. See the vignette "Installing Supporting Packages" for instructions on how
to install any package 'WeightIt' uses, including those that may not be on CRAN.
Author: Noah Greifer [aut, cre]
Maintainer: Noah Greifer <noah.greifer@gmail.com>
Diff between WeightIt versions 0.14.1 dated 2023-05-09 and 0.14.2 dated 2023-05-23
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Title: Dynamic Function-Oriented 'Make'-Like Declarative Pipelines
Description: Pipeline tools coordinate the pieces of computationally
demanding analysis projects.
The 'targets' package is a 'Make'-like pipeline tool for statistics and
data science in R. The package skips costly runtime for tasks
that are already up to date,
orchestrates the necessary computation with implicit parallel computing,
and abstracts files as R objects. If all the current output matches
the current upstream code and data, then the whole pipeline is up
to date, and the results are more trustworthy than otherwise.
The methodology in this package
borrows from GNU 'Make' (2015, ISBN:978-9881443519)
and 'drake' (2018, <doi:10.21105/joss.00550>).
Author: William Michael Landau [aut, cre]
,
Matthew T. Warkentin [ctb],
Mark Edmondson [ctb] ,
Samantha Oliver [rev] ,
Tristan Mahr [rev] ,
Eli Lilly and Company [cph]
Maintainer: William Michael Landau <will.landau@gmail.com>
Diff between targets versions 1.0.0 dated 2023-04-24 and 1.1.2 dated 2023-05-23
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Title: Powerful and Reliable Tools for Running System Commands in R
Description: Drop-in replacements for the base system2() function with fine control
and consistent behavior across platforms. Supports clean interruption, timeout,
background tasks, and streaming STDIN / STDOUT / STDERR over binary or text
connections. Arguments on Windows automatically get encoded and quoted to work
on different locales.
Author: Jeroen Ooms [aut, cre] ,
Gabor Csardi [ctb]
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>
Diff between sys versions 3.4.1 dated 2022-10-18 and 3.4.2 dated 2023-05-23
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- NEWS | 3 +++ src/win32/exec.c | 4 ++-- 4 files changed, 12 insertions(+), 9 deletions(-)
Title: Additional Tools for Developing Spatially Explicit Discrete
Event Simulation (SpaDES) Models
Description: Provides GIS and map utilities, plus additional modeling tools for
developing cellular automata, dynamic raster models, and agent based models
in 'SpaDES'.
Included are various methods for spatial spreading, spatial agents, GIS
operations, random map generation, and others.
See '?SpaDES.tools' for an categorized overview of these additional tools.
The suggested package 'NLMR' can be installed with
'install.packages("NLMR", repos = "https://PredictiveEcology.r-universe.dev")'.
Author: Eliot J B McIntire [aut, cre] ,
Alex M Chubaty [aut] ,
Yong Luo [ctb],
Steve Cumming [ctb],
Jean Marchal [ctb],
Her Majesty the Queen in Right of Canada, as represented by the
Minister of Natural Resources Canada [cph]
Maintainer: Eliot J B McIntire <eliot.mcintire@nrcan-rncan.gc.ca>
Diff between SpaDES.tools versions 1.0.1 dated 2023-01-05 and 2.0.0 dated 2023-05-23
DESCRIPTION | 55 MD5 | 140 +- NAMESPACE | 121 - NEWS.md | 49 R/SELES.R | 121 - R/distanceFromEachPoint.R | 102 - R/heading.R | 102 - R/helpers.R | 56 R/initialize.R | 328 +++-- R/mapReduce.R | 91 + R/mergeRaster.R | 98 - R/movement.R | 102 - R/neighbourhood.R | 392 +++--- R/numerical-comparisons.R | 5 R/probability.R | 11 R/resample.R | 4 R/rings.R | 126 -- R/spades-tools-deprecated.R | 10 R/spades-tools-package.R | 9 R/splitRaster.R | 188 +-- R/spread.R | 304 ++-- R/spread2.R | 198 +-- R/spread3.R | 108 + R/studyArea.R | 32 inst/WORDLIST | 20 inst/examples/example_cir.R | 78 - inst/examples/example_distanceFromEachPoint.R | 28 inst/examples/example_initiateAgents.R | 41 inst/examples/example_mapReduce.R | 28 inst/examples/example_rings.R | 55 inst/examples/example_splitRaster.R | 42 inst/examples/example_spokes.R | 32 inst/examples/example_spread.R | 252 +--- inst/examples/example_spread2.R | 116 + inst/examples/example_spread3.R | 264 ++-- man/SpaDES.tools-package.Rd | 9 man/adj.Rd | 8 man/cir.Rd | 122 -- man/crw.Rd | 17 man/deprecated.Rd | 10 man/directions.Rd | 43 man/distanceFromEachPoint.Rd | 39 man/dwrpnorm2.Rd | 11 man/gaussMap.Rd | 25 man/heading.Rd | 30 man/initiateAgents.Rd | 62 - man/middlePixel.Rd | 7 man/neutralLandscapeMap.Rd | 32 man/randomPolygons.Rd | 47 man/randomStudyArea.Rd | 8 man/rasterizeReduced.Rd | 44 man/rings.Rd | 95 - man/specnumperpatch-probs.Rd | 15 man/splitRaster.Rd | 69 - man/spokes.Rd | 76 - man/spread.Rd | 348 ++--- man/spread2.Rd | 197 +-- man/spread3.Rd | 264 ++-- man/testEquivalentMetadata.Rd | 3 man/wrap.Rd | 56 tests/testthat/helper-testInit.R | 39 tests/testthat/test-adj.R | 293 +++- tests/testthat/test-examples.R | 14 tests/testthat/test-inRange.R | 48 tests/testthat/test-mapReduce.R | 181 +- tests/testthat/test-mergeRaster.R | 230 ++- tests/testthat/test-neutralLandscapeMap.R | 99 + tests/testthat/test-randomPolygon.R | 32 tests/testthat/test-splitRaster.R | 481 ++++--- tests/testthat/test-spread.R | 1584 +++++++++++++------------- tests/testthat/test-spread2.R | 1317 +++++++++++---------- 71 files changed, 5021 insertions(+), 4642 deletions(-)
Title: Tools for Designing and Weighting Survey Samples
Description: Functions and datasets to support Valliant, Dever, and Kreuter, Practical Tools for Designing and Weighting Survey Samples (2nd edition, 2018). Contains functions for sample size calculation for survey samples using stratified or clustered one-, two-, and three-stage sample designs, and single-stage audit sample designs. Functions are included that will group geographic units accounting for distances apart and measures of size. Other functions compute variance components for multistage designs and sample sizes in two-phase designs. A number of example data sets are included.
Author: Richard Valliant, Jill A. Dever, Frauke Kreuter, George Zipf
Maintainer: Richard Valliant <valliant@umich.edu>
Diff between PracTools versions 1.3 dated 2023-03-19 and 1.4 dated 2023-05-23
DESCRIPTION | 8 +++---- MD5 | 38 ++++++++++++++++++++++-------------- NAMESPACE | 3 ++ NEWS.md |only R/CompMOS.R |only R/GeoDistMOS.R | 34 +++++++++++++++----------------- R/GeoMinMOS.R |only R/clusOpt2.R | 7 +----- build/vignette.rds |binary inst/doc/Distance-and-MOS-PSUs.html | 4 +-- inst/doc/Select-samsize-fcns.R |only inst/doc/Select-samsize-fcns.Rmd |only inst/doc/Select-samsize-fcns.html |only inst/doc/Singlestage-samsize.Rmd | 2 - inst/doc/Singlestage-samsize.html | 35 ++++++++++++++++----------------- inst/doc/Varcomps-multistage.html | 12 +++-------- man/CompMOS.Rd |only man/GeoDistMOS.Rd | 4 +-- man/GeoDistPSU.Rd | 4 +-- man/GeoMinMOS.Rd |only man/clusOpt2.Rd | 2 + vignettes/Samplefcn.png |only vignettes/Select-samsize-fcns.Rmd |only vignettes/Singlestage-samsize.Rmd | 2 - vignettes/practools.bib | 12 ++++------- 25 files changed, 85 insertions(+), 82 deletions(-)
Title: Multiple Empirical Likelihood Tests
Description: Performs multiple empirical likelihood tests for linear and
generalized linear models. The package offers an easy-to-use interface
and flexibility in specifying hypotheses and calibration methods,
extending the framework to simultaneous inferences. The core
computational routines are implemented using the 'Eigen' C++ library
and 'RcppEigen' interface, with OpenMP for parallel computation.
Details of the testing procedures are given in Kim, MacEachern, and
Peruggia (2023) <doi:10.1080/10485252.2023.2206919>. This work was supported
by the U.S. National Science Foundation under Grants No. SES-1921523 and
DMS-2015552.
Author: Eunseop Kim [aut, cre],
Steven MacEachern [ctb, ths],
Mario Peruggia [ctb, ths],
Pierre Chausse [rev],
Alex Stringer [rev]
Maintainer: Eunseop Kim <markean@pm.me>
Diff between melt versions 1.9.0 dated 2022-11-04 and 1.10.0 dated 2023-05-23
melt-1.10.0/melt/DESCRIPTION | 17 melt-1.10.0/melt/MD5 | 92 +--- melt-1.10.0/melt/NAMESPACE | 1 melt-1.10.0/melt/NEWS.md | 10 melt-1.10.0/melt/R/AllClasses.R | 34 - melt-1.10.0/melt/R/AllGenerics.R | 44 - melt-1.10.0/melt/R/coef-methods.R | 3 melt-1.10.0/melt/R/deprecated.R | 23 - melt-1.10.0/melt/R/el_glm.R | 2 melt-1.10.0/melt/R/el_lm.R | 2 melt-1.10.0/melt/R/getDF-methods.R | 5 melt-1.10.0/melt/R/print-methods.R | 24 - melt-1.10.0/melt/R/sigTests-methods.R | 6 melt-1.10.0/melt/R/summary-methods.R | 24 - melt-1.10.0/melt/R/validate.R | 2 melt-1.10.0/melt/README.md | 129 ++++- melt-1.10.0/melt/build/partial.rdb |binary melt-1.10.0/melt/build/vignette.rds |binary melt-1.10.0/melt/inst/WORDLIST | 33 - melt-1.10.0/melt/inst/doc/article.pdf |binary melt-1.10.0/melt/inst/doc/model.html | 126 ++--- melt-1.10.0/melt/inst/doc/performance.html | 120 ++--- melt-1.10.0/melt/man/SummaryGLM-class.Rd | 5 melt-1.10.0/melt/man/SummaryLM-class.Rd | 5 melt-1.10.0/melt/man/SummaryQGLM-class.Rd | 5 melt-1.10.0/melt/man/coef.Rd | 3 melt-1.10.0/melt/man/el_glm.Rd | 2 melt-1.10.0/melt/man/el_lm.Rd | 2 melt-1.10.0/melt/man/el_pairwise.Rd | 5 melt-1.10.0/melt/man/elmt.Rd | 5 melt-1.10.0/melt/man/figures/README-usage-1.png |binary melt-1.10.0/melt/man/getDF.Rd | 5 melt-1.10.0/melt/man/melt-package.Rd | 4 melt-1.10.0/melt/man/print.Rd | 3 melt-1.10.0/melt/man/sigTests.Rd | 15 melt-1.10.0/melt/src/EL.cpp | 9 melt-1.10.0/melt/src/Makevars | 1 melt-1.10.0/melt/src/Makevars.win | 1 melt-1.10.0/melt/src/apply_null_transformation.cpp | 3 melt-1.10.0/melt/src/helpers.cpp | 368 +++++++--------- melt-1.10.0/melt/src/helpers.h | 108 ++-- melt-1.10.0/melt/src/test_multiple_hypotheses_utils.cpp | 94 ++-- melt-1.10.0/melt/src/test_multiple_hypotheses_utils.h | 3 melt-1.10.0/melt/tests/testthat/test-el_glm.R | 8 melt-1.10.0/melt/tests/testthat/test-el_mean.R | 5 melt-1.10.0/melt/tests/testthat/test-skip_on_cran.R | 39 - melt-1.9.0/melt/man/logLik.Rd |only melt-1.9.0/melt/man/logLikEL-class.Rd |only 48 files changed, 686 insertions(+), 709 deletions(-)
Title: Isolation-Based Outlier Detection
Description: Fast and multi-threaded implementation of
isolation forest (Liu, Ting, Zhou (2008) <doi:10.1109/ICDM.2008.17>),
extended isolation forest (Hariri, Kind, Brunner (2018) <arXiv:1811.02141>),
SCiForest (Liu, Ting, Zhou (2010) <doi:10.1007/978-3-642-15883-4_18>),
fair-cut forest (Cortes (2021) <arXiv:2110:13402>),
robust random-cut forest (Guha, Mishra, Roy, Schrijvers (2016) <http://proceedings.mlr.press/v48/guha16.html>),
and customizable variations of them, for isolation-based outlier detection, clustered outlier detection,
distance or similarity approximation (Cortes (2019) <arXiv:1910.12362>),
isolation kernel calculation (Ting, Zhu, Zhou (2018) <doi:10.1145/3219819.3219990>),
and imputation of missing values (Cortes (2019) <arXiv:1911.06646>),
based on random or guided decision tree splitting, and providing different metrics for
scoring anomalies based on isolation depth or density (Cortes (2021) <arXiv:2111.11639>).
Provides simp [...truncated...]
Author: David Cortes [aut, cre, cph],
Thibaut Goetghebuer-Planchon [cph] ,
David Blackman [cph] ,
Sebastiano Vigna [cph] ,
NumPy Developers [cph] ,
SciPy Developers [cph] ,
Enthought Inc [cph] ,
Stephen Moshier [cph]
Maintainer: David Cortes <david.cortes.rivera@gmail.com>
Diff between isotree versions 0.5.19-1 dated 2023-03-16 and 0.5.20 dated 2023-05-23
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- R/isoforest.R | 2 +- build/vignette.rds |binary src/serialize.cpp | 38 +++++++++++++++++++++++++++----------- 5 files changed, 35 insertions(+), 19 deletions(-)
Title: Forensic Pedigree Analysis and Relatedness Inference
Description: Forensic applications of pedigree analysis, including
likelihood ratios for relationship testing, general relatedness
inference, marker simulation, and power analysis. General computation
of exclusion powers is based on Egeland et al. (2014)
<doi:10.1016/j.fsigen.2013.05.001>. Several functions deal
specifically with family reunion cases, implementing and developing
ideas from Kling et al. (2017) <doi:10.1016/j.fsigen.2017.08.006>. A
novelty of 'forrel' is the ability to model background inbreeding in
forensic pedigree computations. This can have significant impact in
applications, as exemplified in Vigeland and Egeland (2019)
<doi:10.1016/j.fsigss.2019.10.175>. 'forrel' is part of the ped suite,
a collection of packages for pedigree analysis. In particular,
'forrel' imports 'pedtools' for creating and manipulating pedigrees
and markers, 'pedprobr' for likelihood computations, and 'pedmut' for
mutation modelling. Pedigree data may be created from scratch, or
loaded [...truncated...]
Author: Magnus Dehli Vigeland [aut, cre]
,
Thore Egeland [ctb]
Maintainer: Magnus Dehli Vigeland <m.d.vigeland@medisin.uio.no>
Diff between forrel versions 1.5.1 dated 2023-04-14 and 1.5.2 dated 2023-05-23
DESCRIPTION | 6 +-- MD5 | 8 ++-- NEWS.md | 7 +++ R/readFam.R | 98 +++++++++++++++++++++++++++++++++++------------------- build/partial.rdb |binary 5 files changed, 78 insertions(+), 41 deletions(-)
Title: Discover Probable Duplicates in Plant Genetic Resources
Collections
Description: Provides functions to aid the identification of probable/possible
duplicates in Plant Genetic Resources (PGR) collections using
'passport databases' comprising of information records of each constituent
sample. These include methods for cleaning the data, creation of a
searchable Key Word in Context (KWIC) index of keywords associated with
sample records and the identification of nearly identical records with
similar information by fuzzy, phonetic and semantic matching of keywords.
Author: J. Aravind [aut, cre] ,
J. Radhamani [aut],
Kalyani Srinivasan [aut],
B. Ananda Subhash [aut],
Rishi Kumar Tyagi [aut],
ICAR-NBGPR [cph] ,
Maurice Aubrey [ctb] ,
Kevin Atkinson [ctb] ,
Lawrence Philips [ctb]
Maintainer: J. Aravind <j.aravind@icar.gov.in>
Diff between PGRdup versions 0.2.3.7 dated 2021-02-17 and 0.2.3.8 dated 2023-05-23
PGRdup-0.2.3.7/PGRdup/build/PGRdup.pdf |only PGRdup-0.2.3.8/PGRdup/DESCRIPTION | 12 - PGRdup-0.2.3.8/PGRdup/MD5 | 68 +++--- PGRdup-0.2.3.8/PGRdup/NEWS.md | 6 PGRdup-0.2.3.8/PGRdup/R/AddProbDup.R | 2 PGRdup-0.2.3.8/PGRdup/R/DataClean.R | 2 PGRdup-0.2.3.8/PGRdup/R/DisProbDup.R | 2 PGRdup-0.2.3.8/PGRdup/R/DoubleMetaphone.R | 2 PGRdup-0.2.3.8/PGRdup/R/GN1000.R | 2 PGRdup-0.2.3.8/PGRdup/R/KWCounts.R | 2 PGRdup-0.2.3.8/PGRdup/R/KWIC.R | 6 PGRdup-0.2.3.8/PGRdup/R/MergeKW.R | 2 PGRdup-0.2.3.8/PGRdup/R/MergeProbDup.R | 2 PGRdup-0.2.3.8/PGRdup/R/PGRdup-package.R | 2 PGRdup-0.2.3.8/PGRdup/R/ParseProbDup.R | 2 PGRdup-0.2.3.8/PGRdup/R/ProbDup.R | 2 PGRdup-0.2.3.8/PGRdup/R/ReconstructProbDup.R | 2 PGRdup-0.2.3.8/PGRdup/R/ReviewProbDup.R | 2 PGRdup-0.2.3.8/PGRdup/R/SplitProbDup.R | 2 PGRdup-0.2.3.8/PGRdup/R/ValidatePrimKey.R | 2 PGRdup-0.2.3.8/PGRdup/R/ViewProbDup.R | 2 PGRdup-0.2.3.8/PGRdup/R/globals.R | 2 PGRdup-0.2.3.8/PGRdup/R/print.KWIC.R | 2 PGRdup-0.2.3.8/PGRdup/R/print.ProbDup.R | 2 PGRdup-0.2.3.8/PGRdup/R/read.genesys.R | 2 PGRdup-0.2.3.8/PGRdup/R/xtra.R | 2 PGRdup-0.2.3.8/PGRdup/README.md | 260 ++++++++++++++++++----- PGRdup-0.2.3.8/PGRdup/build/partial.rdb |binary PGRdup-0.2.3.8/PGRdup/build/vignette.rds |binary PGRdup-0.2.3.8/PGRdup/inst/CITATION | 42 +-- PGRdup-0.2.3.8/PGRdup/inst/doc/Introduction.Rmd | 52 ++-- PGRdup-0.2.3.8/PGRdup/inst/doc/Introduction.pdf |binary PGRdup-0.2.3.8/PGRdup/inst/extdata/PGRdup.png |binary PGRdup-0.2.3.8/PGRdup/inst/schemaorg.json |only PGRdup-0.2.3.8/PGRdup/man/KWIC.Rd | 178 +++++++-------- PGRdup-0.2.3.8/PGRdup/vignettes/Introduction.Rmd | 52 ++-- 36 files changed, 450 insertions(+), 268 deletions(-)
Title: Spatially Explicit Capture-Recapture
Description: Functions to estimate the density and size of a spatially
distributed animal population sampled with an array of passive detectors,
such as traps, or by searching polygons or transects. Models incorporating
distance-dependent detection are fitted by maximizing the likelihood.
Tools are included for data manipulation and model selection.
Author: Murray Efford [aut, cre] ,
Philipp Jund [ctb]
Maintainer: Murray Efford <murray.efford@otago.ac.nz>
Diff between secr versions 4.5.10 dated 2023-03-09 and 4.6.0 dated 2023-05-23
DESCRIPTION | 17 ++- MD5 | 93 +++++++++++---------- NAMESPACE | 9 +- NEWS | 20 ++++ R/AIC.R | 24 +++-- R/Enk.R | 45 ++++++++-- R/Fewstervarn.R | 2 R/Fletcher.chat.R |only R/LLsurface.secr.R | 2 R/RcppExports.R | 12 +- R/chatnk.R | 182 +++++++++++++++++++++--------------------- R/distancetotrap.R | 4 R/empirical.R | 2 R/fxi.R | 2 R/generalsecrloglik.R | 2 R/make.capthist.R | 14 +-- R/methods.R | 37 ++++---- R/modelAverage.R | 18 ++-- R/reduce.R | 4 R/secr.fit.R | 2 R/sim.capthist.R | 4 R/sim.popn.R | 31 ++++--- R/utility.R | 6 - build/partial.rdb |binary build/vignette.rds |binary inst/doc/secr-datainput.pdf |binary inst/doc/secr-overview.Rmd | 20 ++-- inst/doc/secr-overview.pdf |binary man/AIC.secr.Rd | 39 ++++++--- man/Fletcher.chat.Rd |only man/Parallel.Rd | 146 ++++++++++++--------------------- man/chat.Rd | 67 +++++++++++---- man/fxi.Rd | 20 +--- man/modelAverage.Rd | 8 + man/predict.secr.Rd | 2 man/raster2.Rd | 2 man/secr-defunct.Rd | 2 man/secr-internal.Rd | 8 + man/secr-package.Rd | 4 man/sim.popn.Rd | 2 man/trim.Rd | 6 + src/RcppExports.cpp | 61 ++++++-------- src/autils.cpp | 9 +- src/nkpoint.cpp |only src/pdot.cpp | 136 ------------------------------- src/polygonN.cpp | 7 - tests/testthat.R | 2 tests/testthat/test-derived.R | 7 - vignettes/secr-overview.Rmd | 20 ++-- 49 files changed, 537 insertions(+), 563 deletions(-)
Title: Hierarchical Partitioning of Marginal R2 for Generalized
Mixed-Effect Models
Description: Conducts hierarchical partitioning to calculate individual contributions of each predictor (fixed effects) towards marginal R2 for generalized linear mixed-effect model (including lm, glm and glmm) based on output of r.squaredGLMM() in 'MuMIn', applying the algorithm of Lai J.,Zou Y., Zhang S.,Zhang X.,Mao L.(2022)glmm.hp: an R package for computing individual effect of predictors in generalized linear mixed models.Journal of Plant Ecology,15(6)1302-1307<doi:10.1093/jpe/rtac096>.
Author: Jiangshan Lai [aut, cre] ,
Kim Nimon [aut]
Maintainer: Jiangshan Lai <lai@njfu.edu.cn>
Diff between glmm.hp versions 0.0-9 dated 2023-04-12 and 0.1-0 dated 2023-05-22
DESCRIPTION | 10 +++++----- MD5 | 12 ++++++------ NAMESPACE | 1 + R/glmm.hp.r | 25 ++++++++++++++++--------- R/plot.glmmhp.r | 32 ++++++++++++++++++++++++++------ man/glmm.hp.Rd | 6 ++++-- man/plot.glmmhp.Rd | 7 ++++++- 7 files changed, 64 insertions(+), 29 deletions(-)
Title: Derivatives of the First-Passage Time Density and Cumulative
Distribution Function, and Random Sampling from the (Truncated)
First-Passage Time Distribution
Description: First, we provide functions to calculate the partial derivative of the first-passage time diffusion probability density function (PDF) and cumulative
distribution function (CDF) with respect to the first-passage time t (only for PDF), the upper barrier a, the drift rate v, the relative starting point w, the
non-decision time t0, the inter-trial variability of the drift rate sv, the inter-trial variability of the rel. starting point sw, and the inter-trial variability
of the non-decision time st0. In addition the PDF and CDF themselves are also provided. Most calculations are done on the logarithmic scale to make it more stable.
Since the PDF, CDF, and their derivatives are represented as infinite series, we give the user the option to control the approximation errors with the argument
'precision'. For the numerical integration we used the C library cubature by Johnson, S. G. (2005-2013) <https://github.com/stevengj/cubature>. Numerical integration is
required whenever sv, sw, and [...truncated...]
Author: Raphael Hartmann [aut, cre],
Karl C. Klauer [cph, aut, ctb, ths],
Steven G. Johnson [ctb],
Jean M. Linhart [ctb],
Brian Gough [ctb],
Gerard Jungman [ctb],
Rudolf Schuerer [ctb],
Przemyslaw Sliwa [ctb],
Jason H. Stover [ctb]
Maintainer: Raphael Hartmann <raphael.hartmann@protonmail.com>
Diff between WienR versions 0.3-9 dated 2023-04-23 and 0.3-10 dated 2023-05-22
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- build/partial.rdb |binary src/methods.cpp | 8 +++++--- src/tools.cpp | 2 +- 5 files changed, 13 insertions(+), 11 deletions(-)
Title: Species Distribution Modeling and Ecological Niche Modeling
Description: Implements species distribution modeling and ecological niche
modeling, including: bias correction, spatial cross-validation, model
evaluation, raster interpolation, biotic "velocity" (speed and
direction of movement of a "mass" represented by a raster), interpolating
across a time series of rasters, and use of spatially imprecise records.
The heart of the package is a set of "training" functions which
automatically optimize model complexity based number of available
occurrences. These algorithms include MaxEnt, MaxNet, boosted regression
trees/gradient boosting machines, generalized additive models,
generalized linear models, natural splines, and random forests. To enhance
interoperability with other modeling packages, no new classes are created.
The package works with 'PROJ6' geodetic objects and coordinate reference
systems.
Author: Adam B. Smith [cre, aut]
Maintainer: Adam B. Smith <adam.smith@mobot.org>
Diff between enmSdmX versions 1.0.4 dated 2023-04-19 and 1.0.6 dated 2023-05-22
DESCRIPTION | 8 +-- MD5 | 48 ++++++++++++----------- NEWS.md | 10 ++++ R/bioticVelocity.r | 6 +- R/getValueByCell.r | 2 R/predictEnmSdm.r | 17 ++++---- R/private_calcWeights.r | 10 +++- R/trainBRT.r | 6 +- R/trainGAM.r | 6 +- R/trainGLM.r | 14 ++++-- R/trainMaxEnt.r | 18 +++++--- R/trainMaxNet.r | 59 +++++++++++++++-------------- R/trainNS.r | 6 +- R/trainRF.r | 6 +- R/troubleshooting_parallel_operations.r |only build/partial.rdb |binary man/bioticVelocity.Rd | 2 man/predictEnmSdm.Rd | 4 - man/trainBRT.Rd | 2 man/trainGAM.Rd | 2 man/trainGLM.Rd | 2 man/trainMaxEnt.Rd | 2 man/trainMaxNet.Rd | 2 man/trainNS.Rd | 2 man/trainRF.Rd | 2 man/troubleshooting_parallel_operations.Rd |only 26 files changed, 135 insertions(+), 101 deletions(-)
Title: "Empirical Bayes Smoothing Splines with Correlated Errors"
Description: Presents a statistical method that uses a recursive algorithm for signal extraction. The method handles a non-parametric estimation for the correlation of the errors. See "Krivobokova", "Serra", "Rosales" and "Klockmann" (2021) <arXiv:1812.06948> for details.
Author: Francisco Rosales, Tatyana Krivobokova, Paulo Serra.
Maintainer: Francisco Rosales <francisco.rosales-marticorena@protonmail.com>
Diff between eBsc versions 4.16 dated 2023-04-26 and 4.17 dated 2023-05-22
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- man/eBsc-package.Rd | 4 ++-- man/eBsc.Rd | 2 +- man/plot.eBsc.Rd | 2 +- 5 files changed, 12 insertions(+), 12 deletions(-)
Title: A Distributed Worker Launcher Framework
Description: In computationally demanding analysis projects,
statisticians and data scientists asynchronously
deploy long-running tasks to distributed systems,
ranging from traditional clusters to cloud services.
The 'NNG'-powered 'mirai' R package by Gao (2023)
<https://CRAN.R-project.org/package=mirai> is a sleek
and sophisticated scheduler that
efficiently processes these intense workloads.
The 'crew' package extends 'mirai' with a unifying
interface for third-party worker launchers.
Inspiration also comes from packages.
'future' by Bengtsson (2021) <doi:10.32614/RJ-2021-048>,
'rrq' by FitzJohn and Ashton (2023) <https://github.com/mrc-ide/rrq>,
'clustermq' by Schubert (2019) <doi:10.1093/bioinformatics/btz284>),
and 'batchtools' by Lang, Bischel, and Surmann (2017)
<doi:10.21105/joss.00135>.
Author: William Michael Landau [aut, cre]
,
Daniel Woodie [ctb],
Eli Lilly and Company [cph]
Maintainer: William Michael Landau <will.landau@gmail.com>
Diff between crew versions 0.1.1 dated 2023-04-21 and 0.2.1 dated 2023-05-22
DESCRIPTION | 18 + MD5 | 121 ++++++---- NAMESPACE | 6 NEWS.md | 21 + R/crew_assert.R | 40 +++ R/crew_controller.R | 301 ++++++++++++++++----------- R/crew_controller_group.R | 161 ++++++++++---- R/crew_controller_local.R | 17 - R/crew_eval.R | 7 R/crew_launcher.R | 56 +---- R/crew_launcher_local.R | 22 - R/crew_package.R | 7 R/crew_retry.R | 2 R/crew_router.R | 159 ++++++-------- R/utils_packages.R | 40 +++ build/vignette.rds |binary inst/WORDLIST | 5 inst/doc/launcher_plugins.R | 21 - inst/doc/launcher_plugins.Rmd | 21 - inst/doc/launcher_plugins.html | 85 +++---- inst/doc/shiny.R |only inst/doc/shiny.Rmd |only inst/doc/shiny.html |only man/crew-package.Rd | 2 man/crew_assert.Rd | 1 man/crew_class_controller.Rd | 153 +++++++++++-- man/crew_class_controller_group.Rd | 140 ++++++++++-- man/crew_class_launcher.Rd | 43 --- man/crew_class_launcher_local.Rd | 7 man/crew_class_router.Rd | 91 +++----- man/crew_controller.Rd | 27 -- man/crew_controller_group.Rd | 8 man/crew_controller_local.Rd | 52 +--- man/crew_deprecate.Rd |only man/crew_eval.Rd | 6 man/crew_launcher.Rd | 22 - man/crew_launcher_local.Rd | 20 - man/crew_random_name.Rd | 1 man/crew_retry.Rd | 1 man/crew_router.Rd | 8 man/crew_worker.Rd | 1 tests/interactive |only tests/launchers/test-launcher-system2.R | 23 -- tests/testthat/helper-utils.R | 16 + tests/testthat/test-crew_assert.R | 12 + tests/testthat/test-crew_controller.R | 69 ------ tests/testthat/test-crew_controller_group.R | 63 ++--- tests/testthat/test-crew_controller_local.R | 67 +++--- tests/testthat/test-crew_launcher.R | 23 -- tests/testthat/test-crew_launcher_local.R | 50 ++-- tests/testthat/test-crew_random_name.R | 1 tests/testthat/test-crew_router.R | 103 ++++++--- tests/testthat/test-crew_worker.R | 5 tests/testthat/test-utils_packages.R | 17 + tests/throughput/test-backlog-seconds_idle.R |only tests/throughput/test-backlog-tasks_max.R |only tests/throughput/test-persistent-autoscale.R | 9 tests/throughput/test-persistent-group.R | 2 tests/throughput/test-persistent.R | 2 tests/throughput/test-transient-wait.R | 13 - tests/throughput/test-transient.R | 9 vignettes/figures |only vignettes/launcher_plugins.Rmd | 21 - vignettes/shiny.Rmd |only 64 files changed, 1265 insertions(+), 933 deletions(-)
Title: Sound Synthesis and Acoustic Analysis
Description: Performs parametric synthesis of sounds with harmonic and noise
components such as animal vocalizations or human voice. Also offers tools
for audio manipulation and acoustic analysis, including pitch tracking,
spectral analysis, audio segmentation, pitch and formant shifting, etc.
Includes four interactive web apps for synthesizing and annotating audio,
manually correcting pitch contours, and measuring formant frequencies.
Reference: Anikin (2019) <doi:10.3758/s13428-018-1095-7>.
Author: Andrey Anikin [aut, cre]
Maintainer: Andrey Anikin <rty.anik@rambler.ru>
Diff between soundgen versions 2.5.3 dated 2022-12-11 and 2.6.0 dated 2023-05-22
soundgen-2.5.3/soundgen/R/utilities_analyze.R |only soundgen-2.5.3/soundgen/R/utilities_formants.R |only soundgen-2.5.3/soundgen/R/utilities_loudness.R |only soundgen-2.5.3/soundgen/R/utilities_math.R |only soundgen-2.5.3/soundgen/R/utilities_morph.R |only soundgen-2.5.3/soundgen/R/utilities_pitch_postprocessing.R |only soundgen-2.5.3/soundgen/R/utilities_segment.R |only soundgen-2.5.3/soundgen/R/utilities_soundgen.R |only soundgen-2.6.0/soundgen/DESCRIPTION | 12 soundgen-2.6.0/soundgen/MD5 | 316 ++++----- soundgen-2.6.0/soundgen/NAMESPACE | 6 soundgen-2.6.0/soundgen/NEWS | 25 soundgen-2.6.0/soundgen/R/SSM.R | 4 soundgen-2.6.0/soundgen/R/am.R | 74 +- soundgen-2.6.0/soundgen/R/amplitude.R | 4 soundgen-2.6.0/soundgen/R/analyze.R | 110 ++- soundgen-2.6.0/soundgen/R/analyze_utilities.R |only soundgen-2.6.0/soundgen/R/audSpec.R | 11 soundgen-2.6.0/soundgen/R/data.R | 15 soundgen-2.6.0/soundgen/R/defaults.R | 12 soundgen-2.6.0/soundgen/R/detectNLP.R |only soundgen-2.6.0/soundgen/R/filters.R | 165 +++- soundgen-2.6.0/soundgen/R/formants.R | 17 soundgen-2.6.0/soundgen/R/formants_utilities.R |only soundgen-2.6.0/soundgen/R/loudness_utilities.R |only soundgen-2.6.0/soundgen/R/math.R |only soundgen-2.6.0/soundgen/R/modulationSpectrum.R | 453 +++++++------ soundgen-2.6.0/soundgen/R/morph_utilities.R |only soundgen-2.6.0/soundgen/R/naiveBayes.R |only soundgen-2.6.0/soundgen/R/nonlinPred.R |only soundgen-2.6.0/soundgen/R/phasegram.R |only soundgen-2.6.0/soundgen/R/pitch_postprocessing.R |only soundgen-2.6.0/soundgen/R/postprocessing.R | 4 soundgen-2.6.0/soundgen/R/resample.R | 25 soundgen-2.6.0/soundgen/R/segment.R | 7 soundgen-2.6.0/soundgen/R/segment_utilities.R |only soundgen-2.6.0/soundgen/R/soundgen.R | 4 soundgen-2.6.0/soundgen/R/soundgen_utilities.R |only soundgen-2.6.0/soundgen/R/spectralDescr.R | 142 ++-- soundgen-2.6.0/soundgen/R/spectrogram.R | 383 ++++++++-- soundgen-2.6.0/soundgen/R/surprisal.R | 303 ++++---- soundgen-2.6.0/soundgen/R/vtl.R | 2 soundgen-2.6.0/soundgen/data/def_form.rda |binary soundgen-2.6.0/soundgen/data/defaults_analyze.rda |binary soundgen-2.6.0/soundgen/data/detectNLP_training_nonv.rda |only soundgen-2.6.0/soundgen/data/detectNLP_training_synth.rda |only soundgen-2.6.0/soundgen/inst/CITATION | 5 soundgen-2.6.0/soundgen/inst/shiny/annotation_app/server.R | 77 +- soundgen-2.6.0/soundgen/inst/shiny/annotation_app/ui.R | 35 - soundgen-2.6.0/soundgen/inst/shiny/formant_app/server.R | 78 +- soundgen-2.6.0/soundgen/inst/shiny/formant_app/ui.R | 40 - soundgen-2.6.0/soundgen/inst/shiny/pitch_app/server.R | 96 +- soundgen-2.6.0/soundgen/inst/shiny/pitch_app/ui.R | 40 - soundgen-2.6.0/soundgen/inst/shiny/soundgen_main/server.R | 2 soundgen-2.6.0/soundgen/inst/shiny/soundgen_main/ui.R | 3 soundgen-2.6.0/soundgen/man/ERBToHz.Rd | 2 soundgen-2.6.0/soundgen/man/HzToERB.Rd | 2 soundgen-2.6.0/soundgen/man/HzToNotes.Rd | 2 soundgen-2.6.0/soundgen/man/HzToSemitones.Rd | 2 soundgen-2.6.0/soundgen/man/Mode.Rd | 2 soundgen-2.6.0/soundgen/man/addPitchCands.Rd | 2 soundgen-2.6.0/soundgen/man/addVectors.Rd | 2 soundgen-2.6.0/soundgen/man/analyze.Rd | 29 soundgen-2.6.0/soundgen/man/analyzeFrame.Rd | 2 soundgen-2.6.0/soundgen/man/audSpectrogram.Rd | 7 soundgen-2.6.0/soundgen/man/bandpass.Rd | 50 + soundgen-2.6.0/soundgen/man/clumper.Rd | 33 soundgen-2.6.0/soundgen/man/convertStringToFormants.Rd | 2 soundgen-2.6.0/soundgen/man/convert_sec_to_hms.Rd | 2 soundgen-2.6.0/soundgen/man/costJumps.Rd | 2 soundgen-2.6.0/soundgen/man/costPerPath.Rd | 2 soundgen-2.6.0/soundgen/man/detectNLP.Rd |only soundgen-2.6.0/soundgen/man/detectNLP_training_nonv.Rd |only soundgen-2.6.0/soundgen/man/detectNLP_training_synth.Rd |only soundgen-2.6.0/soundgen/man/detectPitchJumps.Rd |only soundgen-2.6.0/soundgen/man/divideIntoSyllables.Rd | 2 soundgen-2.6.0/soundgen/man/dot-analyze.Rd | 25 soundgen-2.6.0/soundgen/man/dot-audSpectrogram.Rd | 4 soundgen-2.6.0/soundgen/man/dot-bandpass.Rd | 9 soundgen-2.6.0/soundgen/man/dot-detectNLP.Rd |only soundgen-2.6.0/soundgen/man/dot-getSurprisal.Rd | 8 soundgen-2.6.0/soundgen/man/dot-modulationSpectrum.Rd | 16 soundgen-2.6.0/soundgen/man/dot-phasegram.Rd |only soundgen-2.6.0/soundgen/man/dot-spectrogram.Rd | 16 soundgen-2.6.0/soundgen/man/filled.contour.mod.Rd | 2 soundgen-2.6.0/soundgen/man/findBursts.Rd | 2 soundgen-2.6.0/soundgen/man/findElbow.Rd |only soundgen-2.6.0/soundgen/man/findGrad.Rd | 2 soundgen-2.6.0/soundgen/man/findSyllables.Rd | 2 soundgen-2.6.0/soundgen/man/findVoicedSegments.Rd | 2 soundgen-2.6.0/soundgen/man/findZeroCrossing.Rd | 2 soundgen-2.6.0/soundgen/man/forcePerPath.Rd | 2 soundgen-2.6.0/soundgen/man/formatPitchManual.Rd | 2 soundgen-2.6.0/soundgen/man/gaussianSmooth2D.Rd | 2 soundgen-2.6.0/soundgen/man/generatePath.Rd | 2 soundgen-2.6.0/soundgen/man/getAM_env.Rd | 7 soundgen-2.6.0/soundgen/man/getBandwidth.Rd | 2 soundgen-2.6.0/soundgen/man/getEntropy.Rd | 2 soundgen-2.6.0/soundgen/man/getFeatureFlux.Rd | 2 soundgen-2.6.0/soundgen/man/getGlottalCycles.Rd | 2 soundgen-2.6.0/soundgen/man/getIntegerRandomWalk.Rd | 2 soundgen-2.6.0/soundgen/man/getLoudnessPerFrame.Rd | 2 soundgen-2.6.0/soundgen/man/getPrior.Rd | 2 soundgen-2.6.0/soundgen/man/getRandomWalk.Rd | 2 soundgen-2.6.0/soundgen/man/getSigmoid.Rd | 2 soundgen-2.6.0/soundgen/man/getSpectralEnvelope.Rd | 7 soundgen-2.6.0/soundgen/man/getSpectralFlux.Rd | 2 soundgen-2.6.0/soundgen/man/getSurprisal.Rd | 37 - soundgen-2.6.0/soundgen/man/getSurprisal_matrix.Rd | 5 soundgen-2.6.0/soundgen/man/getSurprisal_vector.Rd | 9 soundgen-2.6.0/soundgen/man/hz2mel.Rd | 2 soundgen-2.6.0/soundgen/man/identifyAndPlay.Rd | 2 soundgen-2.6.0/soundgen/man/interpolMatrix.Rd | 7 soundgen-2.6.0/soundgen/man/interpolate.Rd | 2 soundgen-2.6.0/soundgen/man/intplNA.Rd | 2 soundgen-2.6.0/soundgen/man/isCentral.localMax.Rd | 2 soundgen-2.6.0/soundgen/man/isNeighbour_mod.Rd |only soundgen-2.6.0/soundgen/man/iso226.Rd | 2 soundgen-2.6.0/soundgen/man/listDepth.Rd | 2 soundgen-2.6.0/soundgen/man/lockToFormants.Rd | 2 soundgen-2.6.0/soundgen/man/log01.Rd | 2 soundgen-2.6.0/soundgen/man/logMatrix.Rd | 3 soundgen-2.6.0/soundgen/man/logWarpMS.Rd |only soundgen-2.6.0/soundgen/man/logistic.Rd |only soundgen-2.6.0/soundgen/man/logit.Rd |only soundgen-2.6.0/soundgen/man/matchColumns.Rd | 2 soundgen-2.6.0/soundgen/man/matchLengths.Rd | 2 soundgen-2.6.0/soundgen/man/medianSmoother.Rd | 2 soundgen-2.6.0/soundgen/man/modulationSpectrum.Rd | 57 + soundgen-2.6.0/soundgen/man/modulationSpectrumFragment.Rd | 8 soundgen-2.6.0/soundgen/man/morphDF.Rd | 2 soundgen-2.6.0/soundgen/man/morphFormants.Rd | 2 soundgen-2.6.0/soundgen/man/morphList.Rd | 2 soundgen-2.6.0/soundgen/man/naiveBayes.Rd |only soundgen-2.6.0/soundgen/man/naiveBayes_dynamicPrior.Rd |only soundgen-2.6.0/soundgen/man/naiveBayes_likelihood.Rd |only soundgen-2.6.0/soundgen/man/naiveBayes_train.Rd |only soundgen-2.6.0/soundgen/man/nonLinearPrediction_mod.Rd |only soundgen-2.6.0/soundgen/man/nonlinPred.Rd |only soundgen-2.6.0/soundgen/man/nonlinStats.Rd |only soundgen-2.6.0/soundgen/man/notesToHz.Rd | 2 soundgen-2.6.0/soundgen/man/objectToString.Rd | 2 soundgen-2.6.0/soundgen/man/pDistr.Rd | 2 soundgen-2.6.0/soundgen/man/parabPeakInterpol.Rd | 2 soundgen-2.6.0/soundgen/man/pathfinder.Rd | 4 soundgen-2.6.0/soundgen/man/pathfinding_fast.Rd | 2 soundgen-2.6.0/soundgen/man/pathfinding_slow.Rd | 2 soundgen-2.6.0/soundgen/man/phasegram.Rd |only soundgen-2.6.0/soundgen/man/phon2sone.Rd | 2 soundgen-2.6.0/soundgen/man/plotMS.Rd |only soundgen-2.6.0/soundgen/man/plotSpec.Rd | 4 soundgen-2.6.0/soundgen/man/princarg.Rd | 2 soundgen-2.6.0/soundgen/man/pseudoLog.Rd |only soundgen-2.6.0/soundgen/man/pseudoLog_undo.Rd |only soundgen-2.6.0/soundgen/man/rbind_fill.Rd | 2 soundgen-2.6.0/soundgen/man/reformatFormants.Rd | 2 soundgen-2.6.0/soundgen/man/reportCI.Rd | 2 soundgen-2.6.0/soundgen/man/reportTime.Rd | 2 soundgen-2.6.0/soundgen/man/rnorm_truncated.Rd | 2 soundgen-2.6.0/soundgen/man/sampleModif.Rd | 2 soundgen-2.6.0/soundgen/man/scaleNoiseAnchors.Rd | 2 soundgen-2.6.0/soundgen/man/scaleSPL.Rd | 2 soundgen-2.6.0/soundgen/man/segment.Rd | 6 soundgen-2.6.0/soundgen/man/semitonesToHz.Rd | 2 soundgen-2.6.0/soundgen/man/silenceSegments.Rd | 2 soundgen-2.6.0/soundgen/man/snake.Rd | 2 soundgen-2.6.0/soundgen/man/spectrogram.Rd | 46 - soundgen-2.6.0/soundgen/man/splitIntoChunks.Rd | 2 soundgen-2.6.0/soundgen/man/spreadSpec.Rd | 2 soundgen-2.6.0/soundgen/man/ssm.Rd | 4 soundgen-2.6.0/soundgen/man/subhToHarm.Rd | 5 soundgen-2.6.0/soundgen/man/summarizeAnalyze.Rd | 2 soundgen-2.6.0/soundgen/man/switchColorTheme.Rd | 2 soundgen-2.6.0/soundgen/man/to_dB.Rd | 2 soundgen-2.6.0/soundgen/man/updateAnalyze.Rd | 2 soundgen-2.6.0/soundgen/man/upsampleGC.Rd | 2 soundgen-2.6.0/soundgen/man/validatePars.Rd | 2 soundgen-2.6.0/soundgen/man/warpMatrix.Rd | 2 soundgen-2.6.0/soundgen/man/wiggleAnchors.Rd | 2 soundgen-2.6.0/soundgen/man/wiggleGC.Rd | 2 soundgen-2.6.0/soundgen/man/zeroOne.Rd | 2 181 files changed, 1913 insertions(+), 1121 deletions(-)
Title: Tools, Classes, and Methods for Interfacing with 'SaTScan'
Stand-Alone Software
Description: 'SaTScan'(TM) <https://www.satscan.org> is software for finding regions in
Time, Space, or Time-Space that have excess risk, based on scan statistics, and
uses Monte Carlo hypothesis testing to generate P-values for these regions. The
'rsatscan' package provides functions for writing R data frames in
'SaTScan'-readable formats, for setting 'SaTScan' parameters, for running 'SaTScan' in
the OS, and for reading the files that 'SaTScan' creates.
Author: Ken Kleinman [aut],
Scott Hostovich [cre],
Amer Moosa [ctb]
Maintainer: Scott Hostovich <HostovichS@imsweb.com>
Diff between rsatscan versions 1.0.3 dated 2023-04-21 and 1.0.4 dated 2023-05-22
DESCRIPTION | 9 +-- MD5 | 55 ++++++++++---------- NAMESPACE | 1 NEWS | 15 +++++ R/params.R | 37 ++++++++++++- R/readfiles.R | 12 ++-- R/rsatscan.R | 4 - R/satscan.R | 25 ++++++++- R/write.R | 19 ++++++ R/zzz.R | 129 +++++++++++++++++++++++++++++++++++++++++------ build/vignette.rds |binary inst/doc/rsatscan.R | 14 +++-- inst/doc/rsatscan.Rmd | 25 +++++---- inst/doc/rsatscan.html | 126 ++++++++++++++++++++++++--------------------- inst/doc/simulation.R | 13 ++-- inst/doc/simulation.Rmd | 22 ++++---- inst/doc/simulation.html | 36 +++++++------ man/read.col.Rd | 2 man/read.gis.Rd | 2 man/read.llr.Rd | 2 man/read.rr.Rd | 2 man/read.satscanmain.Rd | 2 man/read.sci.Rd | 2 man/rsatscan.Rd | 4 - man/ss.options.Rd | 6 +- man/write.ctl.Rd | 2 man/write.ntk.Rd |only vignettes/rsatscan.Rmd | 25 +++++---- vignettes/simulation.Rmd | 22 ++++---- 29 files changed, 419 insertions(+), 194 deletions(-)
Title: Installing and Loading R Packages for Reproducible Workflows
Description: A single key function, 'Require' that makes rerun-tolerant
versions of 'install.packages' and `require` for CRAN packages, packages
no longer on CRAN (i.e., archived), specific versions of packages,
and GitHub packages. This approach is developed to create reproducible
workflows that are flexible and fast enough to use while in development stages,
while able to build snapshots once a stable package collection is found.
As with other functions in a reproducible workflow, this package
emphasizes functions that return the same result whether it is
the first or subsequent times running the function, with subsequent times being
sufficiently fast that they can be run every time without undue waiting burden on
the user or developer.
Author: Eliot J B McIntire [aut, cre] ,
Alex M Chubaty [ctb] ,
Her Majesty the Queen in Right of Canada, as represented by the
Minister of Natural Resources Canada [cph]
Maintainer: Eliot J B McIntire <eliot.mcintire@canada.ca>
Diff between Require versions 0.3.0 dated 2023-03-14 and 0.3.1 dated 2023-05-22
DESCRIPTION | 8 MD5 | 29 - NEWS.md | 588 +++++++++++++++++----------------- R/Require-helpers.R | 96 ++--- R/Require2.R | 121 +++++- R/pkgDep.R | 169 ++++++--- README.md | 39 +- man/dot-downloadFileMasterMainAuth.Rd | 2 tests/testit/test-0pkgSnapshot.R | 14 tests/testit/test-1packages.R | 155 ++++---- tests/testit/test-2extract.R | 128 +++---- tests/testit/test-5packagesLong.R | 538 +++++++++++++++---------------- tests/testit/test-6pkgDep.R | 268 +++++++-------- tests/testit/test-7pkgSnapshotLong.R | 158 ++++----- tests/testit/test-8modules.R | 4 tests/testit/test-9pkgSnapshotLong.R |only 16 files changed, 1242 insertions(+), 1075 deletions(-)
Title: An Implementation of Matrix Mathematics
Description: An implementation of matrix mathematics wherein operations are performed "by name."
Author: Matthew Heun [aut, cre]
Maintainer: Matthew Heun <matthew.heun@me.com>
Diff between matsbyname versions 0.6.1 dated 2023-04-25 and 0.6.3 dated 2023-05-22
DESCRIPTION | 8 ++-- MD5 | 24 ++++++------ NEWS.md | 20 ++++++++++ R/Utilities.R | 61 ++++++++++++++++++++++++-------- inst/CITATION | 4 +- inst/doc/aggregation-vignette.html | 4 +- inst/doc/applybyname-vignette.html | 4 +- inst/doc/matsbyname.html | 4 +- man/create_colvec_byname.Rd | 8 +++- man/create_matrix_byname.Rd | 8 +++- man/create_rowvec_byname.Rd | 8 +++- tests/testthat/test-Utilities.R | 70 +++++++++++++++++++++++-------------- tests/testthat/test_Unary.R | 2 - 13 files changed, 152 insertions(+), 73 deletions(-)
Title: Transformation Models
Description: Formula-based user-interfaces to specific transformation models
implemented in package 'mlt'. Available models include Cox models, some parametric
survival models (Weibull, etc.), models for ordered categorical variables,
normal and non-normal (Box-Cox type) linear models, and continuous outcome logistic regression
(Lohse et al., 2017, <DOI:10.12688/f1000research.12934.1>). The underlying theory
is described in Hothorn et al. (2018) <DOI:10.1111/sjos.12291>. An extension to
transformation models for clustered data is provided (Barbanti and Hothorn, 2022,
<DOI:10.1093/biostatistics/kxac048>). Multivariate conditional transformation models
(Klein et al, 2022, <DOI:10.1111/sjos.12501>) and shift-scale transformation models (Siegfried et al, 2023,
<DOI:10.1080/00031305.2023.2203177>) can be fitted as well.
Author: Torsten Hothorn [aut, cre] ,
Luisa Barbanti [aut] ,
Sandra Siegfried [aut] ,
Brian Ripley [ctb],
Bill Venables [ctb],
Douglas M. Bates [ctb],
Nadja Klein [ctb]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between tram versions 0.8-2 dated 2023-03-28 and 0.8-3 dated 2023-05-22
DESCRIPTION | 17 ++++---- MD5 | 30 +++++++------- NAMESPACE | 2 R/internal.R | 24 ++++++++++- R/methods.R | 7 ++- R/tram.R | 22 ++++++++-- build/partial.rdb |binary build/vignette.rds |binary demo/stram.R | 88 +++++++++++++++++++++++------------------- inst/NEWS.Rd | 13 +++++- inst/doc/mtram.pdf |binary inst/doc/tram.pdf |binary man/tram.Rd | 25 +++++++++-- tests/intercepts-Ex.R |only tests/intercepts-Ex.Rout.save |only tests/stram-Ex.R | 14 +----- tests/stram-Ex.Rout.save | 25 +++-------- 17 files changed, 163 insertions(+), 104 deletions(-)
Title: Analyze and Create Elegant Directed Acyclic Graphs
Description: Tidy, analyze, and plot directed acyclic graphs (DAGs).
'ggdag' is built on top of 'dagitty', an R package that uses the
'DAGitty' web tool (<http://dagitty.net>) for creating and analyzing
DAGs. 'ggdag' makes it easy to tidy and plot 'dagitty' objects using
'ggplot2' and 'ggraph', as well as common analytic and graphical
functions, such as determining adjustment sets and node relationships.
Author: Malcolm Barrett [aut, cre]
Maintainer: Malcolm Barrett <malcolmbarrett@gmail.com>
Diff between ggdag versions 0.2.8 dated 2023-03-17 and 0.2.9 dated 2023-05-22
DESCRIPTION | 12 MD5 | 32 +- NEWS.md | 4 R/adjustment_sets.R | 5 R/instrumental.R | 37 ++ R/utils.R | 2 README.md | 2 inst/WORDLIST | 1 inst/doc/bias-structures.html | 125 ++++------ inst/doc/intro-to-dags.html | 119 ++++----- inst/doc/intro-to-ggdag.html | 115 ++++----- man/control_for.Rd | 6 man/geom_dag_text.Rd | 2 man/ggdag-package.Rd | 6 tests/testthat/_snaps/instrumental/ggdag-instrumental-identifies-i-and-i2-as-instrumental.svg | 4 tests/testthat/_snaps/instrumental/ggdag-instrumental-identifies-nothing-as-instrumental.svg |only tests/testthat/_snaps/instrumental/ggdag-instrumental-instrumental-plus-collider.svg |only tests/testthat/test-instrumental.R | 28 ++ 18 files changed, 276 insertions(+), 224 deletions(-)
Title: Nonlinear Growth Models
Description: A compilation of nonlinear growth models.
Author: Daniel Rodriguez
Maintainer: Daniel Rodriguez <daniel.rodriguez.perez@gmail.com>
Diff between growthmodels versions 1.2.0 dated 2013-11-23 and 1.3.1 dated 2023-05-22
growthmodels-1.2.0/growthmodels/inst |only growthmodels-1.3.1/growthmodels/DESCRIPTION | 22 +- growthmodels-1.3.1/growthmodels/MD5 | 108 ++++++------ growthmodels-1.3.1/growthmodels/NAMESPACE | 6 growthmodels-1.3.1/growthmodels/NEWS | 10 + growthmodels-1.3.1/growthmodels/R/blumberg.R | 2 growthmodels-1.3.1/growthmodels/R/brody.R | 2 growthmodels-1.3.1/growthmodels/R/chapmanRichards.R | 2 growthmodels-1.3.1/growthmodels/R/gompertz.R | 2 growthmodels-1.3.1/growthmodels/R/growthmodels.R | 7 growthmodels-1.3.1/growthmodels/R/janoschek.R |only growthmodels-1.3.1/growthmodels/R/logistic.R | 4 growthmodels-1.3.1/growthmodels/R/loglogistic.R | 2 growthmodels-1.3.1/growthmodels/R/mitcherlich.R | 14 + growthmodels-1.3.1/growthmodels/R/mmf.R | 2 growthmodels-1.3.1/growthmodels/R/monomolecular.R | 2 growthmodels-1.3.1/growthmodels/R/negativeExponential.R | 2 growthmodels-1.3.1/growthmodels/R/richard.R | 4 growthmodels-1.3.1/growthmodels/R/schnute.R | 2 growthmodels-1.3.1/growthmodels/R/stannard.R | 2 growthmodels-1.3.1/growthmodels/R/vonBertalanffy.R | 2 growthmodels-1.3.1/growthmodels/R/weibull.R | 2 growthmodels-1.3.1/growthmodels/man/blumberg.Rd | 37 ++-- growthmodels-1.3.1/growthmodels/man/brody.Rd | 36 ++-- growthmodels-1.3.1/growthmodels/man/chapmanRichards.Rd | 37 ++-- growthmodels-1.3.1/growthmodels/man/generalisedLogistic.Rd | 33 ++- growthmodels-1.3.1/growthmodels/man/generalisedRichard.Rd | 36 ++-- growthmodels-1.3.1/growthmodels/man/gompertz.Rd | 34 ++- growthmodels-1.3.1/growthmodels/man/growthmodels-package.Rd | 53 +++-- growthmodels-1.3.1/growthmodels/man/janoschek.Rd |only growthmodels-1.3.1/growthmodels/man/logistic.Rd | 34 ++- growthmodels-1.3.1/growthmodels/man/loglogistic.Rd | 34 ++- growthmodels-1.3.1/growthmodels/man/mitcherlich.Rd | 35 ++- growthmodels-1.3.1/growthmodels/man/mmf.Rd | 37 ++-- growthmodels-1.3.1/growthmodels/man/monomolecular.Rd | 34 ++- growthmodels-1.3.1/growthmodels/man/negativeExponential.Rd | 32 ++- growthmodels-1.3.1/growthmodels/man/richard.Rd | 36 ++-- growthmodels-1.3.1/growthmodels/man/schnute.Rd | 36 ++-- growthmodels-1.3.1/growthmodels/man/stannard.Rd | 36 ++-- growthmodels-1.3.1/growthmodels/man/vonBertalanffy.Rd | 36 ++-- growthmodels-1.3.1/growthmodels/man/weibull.Rd | 36 ++-- growthmodels-1.3.1/growthmodels/tests |only 42 files changed, 490 insertions(+), 361 deletions(-)
Title: Angular Distance Weighting Interpolation
Description: The irregularly-spaced data are interpolated onto regular latitude-longitude grids by weighting each station according to its distance and angle from the center of a search radius.
Author: Panfeng Zhang [aut, cre] ,
Guoyu Ren [ctb],
Yun Qin [ctb],
Chenchen Ren [ctb],
Xiang Zheng [ctb]
Maintainer: Panfeng Zhang <zhangpanfeng@cug.edu.cn>
Diff between adw versions 0.3.0 dated 2023-04-09 and 0.3.1 dated 2023-05-22
DESCRIPTION | 10 +++++----- MD5 | 21 +++++++++++---------- NEWS.md | 5 ++++- R/adw.R | 17 +++++------------ README.md |only build/vignette.rds |binary inst/doc/Introduction.Rmd | 2 +- inst/doc/Introduction.html | 10 +++++----- man/adw_sf.Rd | 6 ++---- man/adw_terra.Rd | 6 ++---- man/adw_vector.Rd | 5 +---- vignettes/Introduction.Rmd | 2 +- 12 files changed, 37 insertions(+), 47 deletions(-)
Title: Command Argument Parsing
Description: A base dependency solution with basic argument parsing for use with
'Rscript'.
Author: Jordan Mark Barbone [aut, cph, cre]
Maintainer: Jordan Mark Barbone <jmbarbone@gmail.com>
Diff between scribe versions 0.1.0 dated 2023-03-13 and 0.2.0 dated 2023-05-22
DESCRIPTION | 6 MD5 | 37 ++--- NEWS.md | 17 ++ R/arg.R | 200 ++++++++++++++++++++++++------- R/class-args.R | 45 +++++- R/class-command-args.R | 7 - R/command-args.R | 84 +++++++------ R/scribe-package.R | 19 ++ R/utils.R | 11 - README.md | 2 build/vignette.rds |binary man/command_args.Rd | 2 man/new_arg.Rd | 8 - man/scribe-package.Rd | 8 + man/scribeArg-class.Rd | 31 ++++ man/scribeCommandArgs-class.Rd | 5 tests/testthat/test-arg-execute.R |only tests/testthat/test-class-args.R | 36 +++++ tests/testthat/test-class-command-args.R | 65 +++++++++- tests/testthat/test-utils.R | 1 20 files changed, 448 insertions(+), 136 deletions(-)
Title: Out-of-Sample R² with Standard Error Estimation
Description: Estimates out-of-sample R² through bootstrap or cross-validation as a measure of predictive performance. In addition, a standard error for this point estimate is provided, and confidence intervals are constructed.
Author: Stijn Hawinkel [cre, aut]
Maintainer: Stijn Hawinkel <stijn.hawinkel@psb.ugent.be>
Diff between oosse versions 1.0.2 dated 2023-04-10 and 1.0.5 dated 2023-05-22
DESCRIPTION | 8 ++-- MD5 | 35 +++++++++--------- R/R2oosse.R | 5 +- R/RsquaredSE.R | 2 - R/buildConfInt.R | 34 ++++++++++++----- README | 20 +++++----- README.md | 41 +++++++++++++-------- build/partial.rdb |binary inst/NEWS.Rmd | 7 +++ inst/NEWS.md | 8 ++++ inst/REFERENCES.bib | 10 +++++ inst/doc/oosseVignette.R | 4 +- inst/doc/oosseVignette.Rmd | 8 ++-- inst/doc/oosseVignette.html | 70 +++++++++++++++++++------------------ man/R2oosse.Rd | 5 +- man/RsquaredSE.Rd | 4 +- man/buildConfInt.Rd | 17 ++++++-- tests/testthat/test-buildConfInt.R |only vignettes/oosseVignette.Rmd | 8 ++-- 19 files changed, 179 insertions(+), 107 deletions(-)
Title: Most Likely Transformations
Description: Likelihood-based estimation of conditional transformation
models via the most likely transformation approach described in
Hothorn et al. (2018) <DOI:10.1111/sjos.12291> and Hothorn (2020)
<DOI:10.18637/jss.v092.i01>.
Author: Torsten Hothorn [aut, cre]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between mlt versions 1.4-6 dated 2023-04-14 and 1.4-7 dated 2023-05-22
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- R/mlt.R | 17 +++++++++++------ build/partial.rdb |binary inst/NEWS.Rd | 16 ++++++++++++++++ man/mlt.Rd | 5 ++++- 6 files changed, 40 insertions(+), 16 deletions(-)
Title: Functions and Utilities for Jordan
Description: Provides core functions and utilities for packages and other code
developed by Jordan Mark Barbone.
Author: Jordan Mark Barbone [aut, cph, cre]
Maintainer: Jordan Mark Barbone <jmbarbone@gmail.com>
Diff between fuj versions 0.1.2 dated 2023-03-06 and 0.1.3 dated 2023-05-22
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- NEWS.md | 4 ++++ R/list.R | 5 +++++ man/list0.Rd | 1 + tests/testthat/test-list.R | 10 ++++++++++ 6 files changed, 28 insertions(+), 8 deletions(-)
Title: Import Public Health Ontario's Ontario Marginalization Index
Description: The Ontario Marginalization Index is a socioeconomic model that is built on Statistics Canada census data.
The model consists of four dimensions: Residential Instability, Material Deprivation, Dependency and Ethnic Concentration.
Each of these dimensions are imported for a variety of geographic levels (DA, CD, etc.) for both the 2011 and 2016 administrations of the census (2021 pending).
These data sets contribute to community analysis of equity with respect to Ontario's Anti-Racism Act.
The Ontario Marginalization Index data is retrieved from the Public Health Ontario website: <https://www.publichealthontario.ca/en/data-and-analysis/health-equity/ontario-marginalization-index>.
The shapefile data is retrieved from the Statistics Canada website: <https://www12.statcan.gc.ca/census-recensement/2011/geo/bound-limit/bound-limit-eng.cfm>.
Author: William Conley [aut, cre]
Maintainer: William Conley <william@cconley.ca>
Diff between onmaRg versions 0.2.0 dated 2022-12-23 and 0.2.1 dated 2023-05-22
DESCRIPTION | 6 ++-- MD5 | 6 ++-- R/om_geo.R | 70 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++- man/om_geo.Rd | 2 - 4 files changed, 76 insertions(+), 8 deletions(-)
Title: Continuous Norming
Description: Conventional methods for producing standard scores or percentiles
in psychometrics or biometrics are often plagued with 'jumps' or 'gaps'
(i.e., discontinuities) in norm tables and low confidence for assessing
extreme scores. The continuous norming method introduced by A. Lenhard et al.
(2016, <doi:10.1177/1073191116656437>; 2019, <doi:10.1371/journal.pone.0222279>;
2021 <doi: 10.1177/0013164420928457>) estimates percentile development
(e. g. over age) and generates continuous test norm scores on the basis of
the raw data from standardization samples, without requiring assumptions
about the distribution of the raw data: Norm scores are directly established
from raw data by modeling the latter ones as a function of both percentile
scores and an explanatory variable (e.g., age). The method minimizes bias
arising from sampling and measurement error, while handling marked deviations
from normality, addressing bottom or ceiling effects and capturing almost
all of the varia [...truncated...]
Author: Alexandra Lenhard [aut] ,
Wolfgang Lenhard [cre, aut] ,
Sebastian Gary [aut],
WPS publisher [fnd]
Maintainer: Wolfgang Lenhard <wolfgang.lenhard@uni-wuerzburg.de>
Diff between cNORM versions 3.0.2 dated 2022-06-12 and 3.0.3 dated 2023-05-22
DESCRIPTION | 10 - MD5 | 27 ++-- NAMESPACE | 2 NEWS.md | 20 +++ R/modelling.R | 38 +++--- R/plot.R | 75 +++++++++++++ R/roots.R | 56 ++++++++-- build/vignette.rds |binary inst/CITATION | 59 +++++++--- inst/doc/WeightedRegression.Rmd | 10 - inst/doc/WeightedRegression.html | 197 ++++++++++++++++++------------------ inst/doc/cNORM-Demo.html | 213 ++++++++++++++++++++++----------------- man/calcPolyInLBase2.Rd |only man/plotSubset.Rd | 4 vignettes/WeightedRegression.Rmd | 10 - 15 files changed, 458 insertions(+), 263 deletions(-)
Title: Analyze and Visualize Data from 'Microsoft Viva Insights'
Description: Provides a versatile range of functions, including exploratory data analysis, time-series analysis, and data validation, whilst at the same time implements a set of best practices in analyzing and visualizing data specific to 'Microsoft Viva Insights'.
Author: Martin Chan [aut, cre],
Carlos Morales [aut]
Maintainer: Martin Chan <martin.chan@microsoft.com>
Diff between vivainsights versions 0.3.0 dated 2023-03-30 and 0.3.1 dated 2023-05-22
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 4 ++++ R/validation_report.R | 4 ++-- README.md | 2 ++ 5 files changed, 15 insertions(+), 9 deletions(-)
Title: Network Analysis and Visualization
Description: Routines for simple graphs and network analysis. It can
handle large graphs very well and provides functions for generating random
and regular graphs, graph visualization, centrality methods and much more.
Author: Gabor Csardi [aut],
Tamas Nepusz [aut] ,
Vincent Traag [aut],
Szabolcs Horvat [aut],
Fabio Zanini [aut],
Daniel Noom [aut],
Kirill Mueller [aut, cre],
Maelle Salmon [ctb],
Chan Zuckerberg Initiative [fnd]
Maintainer: Kirill Mueller <kirill@cynkra.com>
Diff between igraph versions 1.4.2 dated 2023-04-07 and 1.4.3 dated 2023-05-22
DESCRIPTION | 6 +-- MD5 | 20 ++++++------ NEWS.md | 14 +++++++++ R/foreign.R | 9 ++++- build/partial.rdb |binary build/vignette.rds |binary inst/doc/igraph.html | 62 ++++++++++++++++++++-------------------- inst/doc/igraph_ES.html | 62 ++++++++++++++++++++-------------------- man/read_graph.Rd | 12 ++++++- src/Makevars.ucrt | 2 - tests/testthat/test-graph.bfs.R | 2 - 11 files changed, 108 insertions(+), 81 deletions(-)
Title: Modelling Multivariate Data with Additive Bayesian Networks
Description: Bayesian network analysis is a form of probabilistic graphical models which derives from empirical data a directed acyclic graph, DAG, describing the dependency structure between random variables.
An additive Bayesian network model consists of a form of a DAG where each node comprises a generalized linear model, GLM. Additive Bayesian network models are equivalent to Bayesian multivariate regression using graphical modeling; they generalises the usual multivariable regression, GLM, to multiple dependent variables.
'abn' provides routines to help determine optimal Bayesian network models for a given data set, where these models are used to identify statistical dependencies in messy, complex data. The additive formulation of these models is equivalent to multivariate generalized linear modeling (including mixed models with iid random effects).
The usual term to describe this model selection process is structure discovery.
The core functionality is concerned with model selection - determi [...truncated...]
Author: Matteo Delucchi [cre] ,
Reinhard Furrer [aut] ,
Gilles Kratzer [aut] ,
Fraser Iain Lewis [aut] ,
Marta Pittavino [ctr] ,
Kalina Cherneva [ctr]
Maintainer: Matteo Delucchi <matteo.delucchi@math.uzh.ch>
Diff between abn versions 2.7-3 dated 2023-01-25 and 2.7-5 dated 2023-05-22
ChangeLog | 11 ++++++++++- DESCRIPTION | 27 +++++++++++++++++---------- MD5 | 16 ++++++++-------- NAMESPACE | 4 ++-- build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 10 ++++------ tests/Examples/abn-Ex.Rout.save | 8 ++++---- tests/testthat.Rout.save | 2 +- 9 files changed, 46 insertions(+), 32 deletions(-)
Title: Power Under Multiplicity Project
Description: Estimates power, minimum detectable effect size (MDES) and sample size requirements. The context is multilevel randomized experiments with multiple outcomes. The estimation takes into account the use of multiple testing procedures. Development of this package was supported by a grant from the Institute of Education Sciences (R305D170030). For a full package description, including a detailed technical appendix, see <arXiv:2112.15273>.
Author: Kristin Porter [aut],
Luke Miratrix [aut, cre] ,
Kristen Hunter [aut] ,
Zarni Htet [aut],
MDRC [cph],
Institute of Education Sciences [fnd]
Maintainer: Luke Miratrix <luke_miratrix@gse.harvard.edu>
Diff between PUMP versions 1.0.1 dated 2022-09-17 and 1.0.2 dated 2023-05-22
PUMP-1.0.1/PUMP/LICENSE |only PUMP-1.0.1/PUMP/man/gen_assignments.Rd |only PUMP-1.0.2/PUMP/DESCRIPTION | 14 PUMP-1.0.2/PUMP/MD5 | 138 - PUMP-1.0.2/PUMP/NAMESPACE | 2 PUMP-1.0.2/PUMP/R/correlation.R | 48 PUMP-1.0.2/PUMP/R/designs_and_models.R | 493 ++-- PUMP-1.0.2/PUMP/R/grid_functions.R | 111 - PUMP-1.0.2/PUMP/R/model_fitting.R | 79 PUMP-1.0.2/PUMP/R/optimize_power.R | 143 - PUMP-1.0.2/PUMP/R/plots.R | 470 ++-- PUMP-1.0.2/PUMP/R/pump_mdes.R | 65 PUMP-1.0.2/PUMP/R/pump_power.R | 56 PUMP-1.0.2/PUMP/R/pump_sample.R | 87 PUMP-1.0.2/PUMP/R/pump_wy.R | 18 PUMP-1.0.2/PUMP/R/pumpgridresult.R | 21 PUMP-1.0.2/PUMP/R/pumpresult.R | 172 - PUMP-1.0.2/PUMP/R/simulation.R | 518 ++-- PUMP-1.0.2/PUMP/R/util.R | 30 PUMP-1.0.2/PUMP/README.md | 26 PUMP-1.0.2/PUMP/build/vignette.rds |binary PUMP-1.0.2/PUMP/inst/doc/pump_demo.R | 34 PUMP-1.0.2/PUMP/inst/doc/pump_demo.Rmd | 69 PUMP-1.0.2/PUMP/inst/doc/pump_demo.html | 1847 +++++++++++++---- PUMP-1.0.2/PUMP/inst/doc/pump_sample_demo.html | 852 +++++-- PUMP-1.0.2/PUMP/inst/doc/pump_simulate.R | 42 PUMP-1.0.2/PUMP/inst/doc/pump_simulate.Rmd | 110 - PUMP-1.0.2/PUMP/inst/doc/pump_simulate.html | 620 ++++- PUMP-1.0.2/PUMP/man/calc_K.Rd | 2 PUMP-1.0.2/PUMP/man/calc_SE.Rd | 4 PUMP-1.0.2/PUMP/man/check_cor.Rd | 12 PUMP-1.0.2/PUMP/man/convert_params.Rd | 10 PUMP-1.0.2/PUMP/man/figures |only PUMP-1.0.2/PUMP/man/fit_bounded_logistic.Rd | 3 PUMP-1.0.2/PUMP/man/gen_base_sim_data.Rd | 37 PUMP-1.0.2/PUMP/man/gen_cluster_ids.Rd |only PUMP-1.0.2/PUMP/man/gen_sim_data.Rd | 56 PUMP-1.0.2/PUMP/man/interacted_linear_estimators.Rd | 6 PUMP-1.0.2/PUMP/man/makelist_samp.Rd | 2 PUMP-1.0.2/PUMP/man/optimize_power.Rd | 15 PUMP-1.0.2/PUMP/man/plot.pumpresult.Rd | 10 PUMP-1.0.2/PUMP/man/plot_power_curve.Rd | 4 PUMP-1.0.2/PUMP/man/print_context.Rd | 5 PUMP-1.0.2/PUMP/man/print_search.Rd | 4 PUMP-1.0.2/PUMP/man/pump_mdes.Rd | 2 PUMP-1.0.2/PUMP/man/pump_sample_raw.Rd | 2 PUMP-1.0.2/PUMP/man/pumpresult.Rd | 4 PUMP-1.0.2/PUMP/man/transpose_power_table.Rd | 6 PUMP-1.0.2/PUMP/man/validate_d_m.Rd |only PUMP-1.0.2/PUMP/tests/testthat/Rplots.pdf |binary PUMP-1.0.2/PUMP/tests/testthat/helper-functions.R | 10 PUMP-1.0.2/PUMP/tests/testthat/test-calc_SE_and_df.R |only PUMP-1.0.2/PUMP/tests/testthat/test-designs_three.R | 95 PUMP-1.0.2/PUMP/tests/testthat/test-plots.R | 78 PUMP-1.0.2/PUMP/tests/testthat/test-pump_power.R | 41 PUMP-1.0.2/PUMP/tests/testthat/test-pump_sample.R | 4 PUMP-1.0.2/PUMP/tests/testthat/test-sim-gen.R | 16 PUMP-1.0.2/PUMP/tests/testthat/test-sim.R | 89 PUMP-1.0.2/PUMP/tests/testthat/test-update_functions.R | 27 PUMP-1.0.2/PUMP/vignettes/output/ICCgrid.RDS |binary PUMP-1.0.2/PUMP/vignettes/output/MDEScalc.RDS |binary PUMP-1.0.2/PUMP/vignettes/output/MDEScalcmin1.RDS |binary PUMP-1.0.2/PUMP/vignettes/output/MDESwithNumZero.RDS |binary PUMP-1.0.2/PUMP/vignettes/output/numzerogrid.RDS |binary PUMP-1.0.2/PUMP/vignettes/output/othercorrections.RDS |binary PUMP-1.0.2/PUMP/vignettes/output/powICC.RDS |binary PUMP-1.0.2/PUMP/vignettes/output/powR2.RDS |binary PUMP-1.0.2/PUMP/vignettes/output/powbase.RDS |binary PUMP-1.0.2/PUMP/vignettes/output/rhogrid.RDS |binary PUMP-1.0.2/PUMP/vignettes/output/samplesizecalc.RDS |binary PUMP-1.0.2/PUMP/vignettes/output/samplesizeverify.RDS |binary PUMP-1.0.2/PUMP/vignettes/pump_demo.Rmd | 69 PUMP-1.0.2/PUMP/vignettes/pump_simulate.Rmd | 110 - 73 files changed, 4734 insertions(+), 2054 deletions(-)
Title: MR Spectroscopy Analysis Tools
Description: Tools for reading, visualising and processing Magnetic Resonance
Spectroscopy data. The package includes methods for spectral fitting: Wilson
(2021) <DOI:10.1002/mrm.28385> and spectral alignment: Wilson (2018)
<DOI:10.1002/mrm.27605>.
Author: Martin Wilson [cre, aut] ,
Yong Wang [ctb],
John Muschelli [ctb]
Maintainer: Martin Wilson <martin@pipegrep.co.uk>
Diff between spant versions 2.11.0 dated 2023-04-22 and 2.12.0 dated 2023-05-22
DESCRIPTION | 8 +- MD5 | 23 +++---- NAMESPACE | 1 NEWS.md | 5 + R/amp_scaling.R | 44 ++++++++++---- R/fit_display.R | 25 ++++++-- R/mrs_data_display.R | 14 +++- R/mrs_data_proc.R | 16 ++++- inst/doc/spant-intro.html | 118 +++++++++++++++++++------------------- inst/doc/spant-preprocessing.html | 4 - man/plot.mrs_data.Rd | 9 ++ man/sub_first_dyn.Rd |only man/sub_mean_dyns.Rd | 4 - 13 files changed, 171 insertions(+), 100 deletions(-)
Title: Binary Causality Inference Framework
Description: A framework to infer causality on binary data using techniques in frequent pattern mining and estimation statistics. Given a set of individual vectors S={x} where x(i) is a realization value of binary variable i, the framework infers empirical causal relations of binary variables i,j from S in a form of causal graph G=(V,E) where V is a set of nodes representing binary variables and there is an edge from i to j in E if the variable i causes j. The framework determines dependency among variables as well as analyzing confounding factors before deciding whether i causes j. The publication of this package is at Chainarong Amornbunchornvej, Navaporn Surasvadi, Anon Plangprasopchok, and Suttipong Thajchayapong (2023) <doi:10.1016/j.heliyon.2023.e15947>.
Author: Chainarong Amornbunchornvej [aut, cre]
Maintainer: Chainarong Amornbunchornvej <grandca@gmail.com>
Diff between BiCausality versions 0.1.2 dated 2022-08-19 and 0.1.3 dated 2023-05-22
DESCRIPTION | 10 - MD5 | 12 - NEWS.md | 4 README.md | 3 build/vignette.rds |binary inst/CITATION | 16 + inst/doc/BiCausality_demo.html | 381 ++++++++++++++++------------------------- 7 files changed, 180 insertions(+), 246 deletions(-)
Title: Mixed-Effect Models, with or without Spatial Random Effects
Description: Inference based on models with or without spatially-correlated random effects, multivariate responses, or non-Gaussian random effects (e.g., Beta). Variation in residual variance (heteroscedasticity) can itself be represented by a mixed-effect model. Both classical geostatistical models (Rousset and Ferdy 2014 <doi:10.1111/ecog.00566>), and Markov random field models on irregular grids (as considered in the 'INLA' package, <https://www.r-inla.org>), can be fitted, with distinct computational procedures exploiting the sparse matrix representations for the latter case and other autoregressive models. Laplace approximations are used for likelihood or restricted likelihood. Penalized quasi-likelihood and other variants discussed in the h-likelihood literature (Lee and Nelder 2001 <doi:10.1093/biomet/88.4.987>) are also implemented.
Author: Francois Rousset [aut, cre, cph]
,
Jean-Baptiste Ferdy [aut, cph],
Alexandre Courtiol [aut]
Maintainer: Francois Rousset <francois.rousset@umontpellier.fr>
Diff between spaMM versions 4.2.1 dated 2023-03-03 and 4.3.0 dated 2023-05-22
DESCRIPTION | 10 MD5 | 190 +++++++++--------- R/Beta.R | 74 +++---- R/COMPoisson.R | 21 +- R/GLM.fit.R | 19 + R/HLCor.R | 1 R/HLCor_body.R | 2 R/HLfit.R | 3 R/HLfit_Internals.R | 216 ++++++++------------- R/HLfit_b_internals.R | 65 +++--- R/HLfit_body.R | 4 R/HLfit_body_NOT_loopenv.R | 4 R/HLframes.R | 15 + R/LLM.R | 12 - R/LMLTslots.R | 2 R/LR.R | 14 - R/RcppExports.R | 4 R/betabin.R |only R/betaresp.R | 10 R/constructors_IMRFs.R | 1 R/corrHLfit-internals.R | 86 ++++---- R/corrHLfit.R | 1 R/corrPars.R | 5 R/cov_new_fix.R | 18 - R/determine_spprec.R | 5 R/extractors.R | 197 +++++++++++++------ R/fam2LLfam.R | 13 - R/fit_as_ZX.R | 11 - R/fit_as_sparsePrecision.R | 11 - R/fitme.R | 6 R/fitme_body.R | 5 R/fitmecorrHLfit_body_internals.R | 34 ++- R/geo_info.R | 42 ++-- R/get_inits_by_glm.R | 314 +++++++++++++++++++------------ R/glm.nodev.fit.R | 13 - R/hatvalues.R | 26 +- R/llm.fit.R | 134 +++++++++---- R/locoptim.R | 125 ++++++++++-- R/makeLowerUpper.R | 8 R/negbin1.R | 20 - R/negbin2.R | 21 +- R/newPLS.R | 68 +----- R/numInfo.R | 12 - R/plot_effects.R | 2 R/poisson.R | 12 - R/postfit_internals.R | 167 +++++++++++++++- R/predict.R | 91 ++++++-- R/predict_mv.R | 2 R/preprocess.R | 30 ++ R/preprocess_MV.R | 10 R/preprocess_internals.R | 26 +- R/profile.R | 7 R/sXaug_EigenDense_QRP_Chol_scaled.R | 5 R/sXaug_sparsePrecisions.R | 65 +++--- R/safe_opt.R | 20 + R/simulate.HL.R | 33 +-- R/spaMM.data.R | 19 + R/summary.HL.R | 13 - R/update.HL.R | 8 data/clinics.RData |only inst/NEWS.Rd | 27 ++ man/CauchyCorr.Rd | 2 man/HLfit.Rd | 7 man/MaternCorr.Rd | 4 man/R2.Rd | 6 man/anova.HLfit.Rd | 2 man/beta_resp.Rd | 5 man/betabin.Rd |only man/clinics.Rd |only man/extractors.Rd | 6 man/fitmv.Rd | 13 - man/fixed.Rd | 2 man/get_cPredVar.Rd | 9 man/llm.fit.Rd | 2 man/method.Rd | 2 man/negbin.Rd | 10 man/negbin1.Rd | 8 man/numInfo.Rd | 2 man/predVar.Rd | 2 man/predict.Rd | 11 - man/residVar.Rd | 10 man/residuals.HLfit.Rd | 47 +++- man/setNbThreads.Rd |only man/spaMM-internal.Rd | 2 man/spaMM.Rd | 2 man/vcov.Rd | 2 src/Makevars | 4 src/Makevars.win | 4 src/RcppExports.cpp | 12 + src/newBessel.cpp | 21 ++ src/spaMM_linear.cpp | 7 src/spaMM_linear.h | 1 tests/testthat/Rplots.pdf |only tests/testthat/extralong/test-mv-extra.R | 7 tests/testthat/test-LLM.R | 105 +++++++++- tests/testthat/test-adjacency-long.R | 2 tests/testthat/test-more-predict.R | 6 tests/testthat/test-obsInfo.R | 8 tests/testthat/test-predVar.R | 10 99 files changed, 1760 insertions(+), 962 deletions(-)
Title: Preprocessing Operators and Pipelines for 'mlr3'
Description: Dataflow programming toolkit that enriches 'mlr3' with a diverse
set of pipelining operators ('PipeOps') that can be composed into graphs.
Operations exist for data preprocessing, model fitting, and ensemble
learning. Graphs can themselves be treated as 'mlr3' 'Learners' and can
therefore be resampled, benchmarked, and tuned.
Author: Martin Binder [aut, cre],
Florian Pfisterer [aut] ,
Lennart Schneider [aut] ,
Bernd Bischl [aut] ,
Michel Lang [aut] ,
Sebastian Fischer [ctb] ,
Susanne Dandl [aut]
Maintainer: Martin Binder <mlr.developer@mb706.com>
Diff between mlr3pipelines versions 0.5.0 dated 2023-05-22 and 0.5.0-1 dated 2023-05-22
DESCRIPTION | 6 +++--- MD5 | 16 ++++++++-------- NEWS.md | 4 ++++ R/PipeOp.R | 4 +--- R/PipeOpLearnerCV.R | 7 +++++++ R/PipeOpTuneThreshold.R | 15 +++++++++------ README.md | 2 +- tests/testthat/test_pipeop_learnercv.R | 22 ++++++++++++++++++++++ tests/testthat/test_pipeop_tunethreshold.R | 21 +++++++++++++++++++++ 9 files changed, 76 insertions(+), 21 deletions(-)
Title: Bindings to Selected 'liblwgeom' Functions for Simple Features
Description: Access to selected functions found in 'liblwgeom' <https://github.com/postgis/postgis/tree/master/liblwgeom>, the light-weight geometry library used by 'PostGIS' <http://postgis.net/>.
Author: Edzer Pebesma [aut, cre] ,
Colin Rundel [ctb],
Andy Teucher [ctb],
liblwgeom developers [cph]
Maintainer: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Diff between lwgeom versions 0.2-11 dated 2023-01-14 and 0.2-13 dated 2023-05-22
DESCRIPTION | 8 ++-- MD5 | 14 +++---- NEWS.md | 6 +++ R/wkt.R | 2 - man/st_astext.Rd | 2 - src/Makevars.in | 2 - src/Makevars.ucrt | 105 ++++++++++++++++++++++++++++++++++++++++++++++++++++-- src/Makevars.win | 3 - 8 files changed, 124 insertions(+), 18 deletions(-)
Title: Structural Data for Norway
Description: Datasets relating to population in municipalities, municipality/county matching, and how different municipalities have merged/redistricted over time from 2006 to 2020.
Author: Richard Aubrey White [aut, cre]
,
Chi Zhang [aut]
Maintainer: Richard Aubrey White <hello@rwhite.no>
Diff between csdata versions 2023.4.21 dated 2023-04-21 and 2023.5.22 dated 2023-05-22
csdata-2023.4.21/csdata/man/figures/@eaDir |only csdata-2023.5.22/csdata/DESCRIPTION | 6 csdata-2023.5.22/csdata/MD5 | 37 csdata-2023.5.22/csdata/NEWS.md | 8 csdata-2023.5.22/csdata/R/config_aa_environments.r | 8 csdata-2023.5.22/csdata/R/nor_locations_hierarchy.R | 13 csdata-2023.5.22/csdata/R/nor_locations_names.R | 8 csdata-2023.5.22/csdata/R/nor_locations_redistricting.R | 14 csdata-2023.5.22/csdata/R/nor_population_by_age_cats.R | 9 csdata-2023.5.22/csdata/R/sysdata.rda |binary csdata-2023.5.22/csdata/build/vignette.rds |binary csdata-2023.5.22/csdata/inst/doc/csdata.html | 530 +- csdata-2023.5.22/csdata/inst/doc/locations_norway.html | 1859 +++++----- csdata-2023.5.22/csdata/inst/doc/population_norway.html | 706 ++- csdata-2023.5.22/csdata/man/config.Rd | 2 csdata-2023.5.22/csdata/man/nor_locations_hierarchy_from_to.Rd | 2 csdata-2023.5.22/csdata/man/nor_locations_names.Rd | 2 csdata-2023.5.22/csdata/man/nor_locations_redistricting.Rd | 6 csdata-2023.5.22/csdata/man/nor_population_by_age_cats.Rd | 2 csdata-2023.5.22/csdata/man/set_config.Rd | 2 20 files changed, 1767 insertions(+), 1447 deletions(-)
Title: Inference the Partial Correlations Based on Time Series Data
Description: A statistical tool to inference the multi-level partial correlations based on multi-subject time series data, especially for brain functional connectivity. It combines both individual and population level inference by using the methods of Qiu and Zhou. (2021)<DOI: 10.1080/01621459.2021.1917417> and Genovese and Wasserman. (2006)<DOI: 10.1198/016214506000000339>. It realizes two reliable estimation methods of partial correlation coefficients, using scaled lasso and lasso. It can be used to estimate individual- or population-level partial correlations, identify nonzero ones, and find out unequal partial correlation coefficients between two populations.
Author: Yunhaonan Yang [aut, cre],
Peng Wu [aut],
Xin Gai [aut],
Yumou Qiu [aut],
Xiaohua Zhou [aut]
Maintainer: Yunhaonan Yang <haonan_yy@pku.edu.cn>
Diff between BrainCon versions 0.2.0 dated 2022-04-21 and 0.3.0 dated 2023-05-22
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- R/individual.est.R | 4 +++- R/individual.test.R | 2 +- R/population.test.MinPv.R | 2 +- R/population.test.R | 2 +- R/population2sample.test.MinPv.R | 2 +- R/population2sample.test.R | 2 +- 8 files changed, 18 insertions(+), 16 deletions(-)
Title: Preprocessing Operators and Pipelines for 'mlr3'
Description: Dataflow programming toolkit that enriches 'mlr3' with a diverse
set of pipelining operators ('PipeOps') that can be composed into graphs.
Operations exist for data preprocessing, model fitting, and ensemble
learning. Graphs can themselves be treated as 'mlr3' 'Learners' and can
therefore be resampled, benchmarked, and tuned.
Author: Martin Binder [aut, cre],
Florian Pfisterer [aut] ,
Lennart Schneider [aut] ,
Bernd Bischl [aut] ,
Michel Lang [aut] ,
Sebastian Fischer [ctb] ,
Susanne Dandl [aut]
Maintainer: Martin Binder <mlr.developer@mb706.com>
Diff between mlr3pipelines versions 0.4.3 dated 2023-03-23 and 0.5.0 dated 2023-05-22
DESCRIPTION | 15 +++++-- MD5 | 59 ++++++++++++++------------- NEWS.md | 8 +++ R/Graph.R | 38 ++++++++++++++--- R/GraphLearner.R | 7 ++- R/PipeOp.R | 32 ++++++++++++++ R/PipeOpBranch.R | 3 - R/PipeOpChunk.R | 3 - R/PipeOpCopy.R | 3 - R/PipeOpEnsemble.R | 13 +++++- R/PipeOpFeatureUnion.R | 3 - R/PipeOpFilter.R | 3 - R/PipeOpImputeLearner.R | 3 - R/PipeOpLearner.R | 3 - R/PipeOpLearnerCV.R | 3 - R/PipeOpMultiplicity.R | 6 +- R/PipeOpProxy.R | 3 - R/PipeOpRandomResponse.R | 3 - R/PipeOpTrafo.R | 3 - R/PipeOpUnbranch.R | 3 - build/partial.rdb |binary build/vignette.rds |only inst/doc/extending.R |only inst/doc/extending.Rmd |only inst/doc/extending.html |only man/Graph.Rd | 3 + man/PipeOp.Rd | 17 +++++++ man/mlr3pipelines-package.Rd | 5 ++ man/mlr_pipeops_nmf.Rd | 2 tests/testthat/test_Graph.R | 50 +++++++++++++++++++++++ tests/testthat/test_GraphLearner.R | 56 ++++++++++++++++++++++++++ tests/testthat/test_dictionary.R | 79 +++++++++++++++++++++++-------------- vignettes |only 33 files changed, 341 insertions(+), 85 deletions(-)
Title: Test Suite for 'Future API' Backends
Description: Backends implementing the 'Future' API, as defined by the 'future' package, should use the tests provided by this package to validate that they meet the minimal requirements of the 'Future' API. The tests can be performed easily from within R or from outside of R from the command line making it straightforward to include them in package tests and in Continuous Integration (CI) pipelines.
Author: Henrik Bengtsson [aut, cre, cph],
The R Consortium [fnd] grant in 2017)
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between future.tests versions 0.6.0 dated 2023-03-11 and 0.7.0 dated 2023-05-22
DESCRIPTION | 8 +- MD5 | 12 ++-- NEWS.md | 31 +++++++++++ build/vignette.rds |binary inst/test-db/options,ff.R | 115 +++++++++++++++++++++++++++---------------- inst/test-db/plan.R | 21 +++++-- inst/test-db/resolved-lazy.R | 32 +++++++---- 7 files changed, 149 insertions(+), 70 deletions(-)
Title: Diversity-Interactions (DI) Models
Description: The 'DImodels' package is suitable for analysing data from biodiversity and ecosystem function studies using the Diversity-Interactions (DI) modelling approach introduced by Kirwan et al. (2009) <doi:10.1890/08-1684.1>. Suitable data will contain proportions for each species and a community-level response variable, and may also include additional factors, such as blocks or treatments. The package can perform data manipulation tasks, such as computing pairwise interactions (the DI_data() function), can perform an automated model selection process (the autoDI() function) and has the flexibility to fit a wide range of user-defined DI models (the DI() function).
Author: Rafael de Andrade Moral [aut, cre],
John Connolly [aut],
Rishabh Vishwakarma [ctb],
Caroline Brophy [aut]
Maintainer: Rafael de Andrade Moral <rafael.deandrademoral@mu.ie>
Diff between DImodels versions 1.2 dated 2022-11-25 and 1.2.1 dated 2023-05-22
DImodels-1.2.1/DImodels/DESCRIPTION | 12 DImodels-1.2.1/DImodels/MD5 | 48 - DImodels-1.2.1/DImodels/NAMESPACE | 58 - DImodels-1.2.1/DImodels/R/DI.R | 16 DImodels-1.2.1/DImodels/R/autoDI.R | 4 DImodels-1.2.1/DImodels/R/richness_vs_DI.R |only DImodels-1.2.1/DImodels/README.md |only DImodels-1.2.1/DImodels/build/partial.rdb |binary DImodels-1.2.1/DImodels/build/vignette.rds |binary DImodels-1.2.1/DImodels/inst/doc/DImodels.R |only DImodels-1.2.1/DImodels/inst/doc/DImodels.Rmd |only DImodels-1.2.1/DImodels/inst/doc/DImodels.html |only DImodels-1.2.1/DImodels/man/DI.Rd | 5 DImodels-1.2.1/DImodels/man/DI_data_manipulation.Rd | 542 +++++++++--------- DImodels-1.2.1/DImodels/man/DI_methods.Rd | 74 +- DImodels-1.2.1/DImodels/man/DImodels-package.Rd | 278 ++++----- DImodels-1.2.1/DImodels/man/autoDI.Rd | 408 ++++++------- DImodels-1.2.1/DImodels/man/figures |only DImodels-1.2.1/DImodels/man/predict.DI.Rd | 154 ++--- DImodels-1.2.1/DImodels/man/richness_vs_DI.Rd |only DImodels-1.2.1/DImodels/man/sim0.Rd | 166 ++--- DImodels-1.2.1/DImodels/man/sim0_design.Rd | 98 +-- DImodels-1.2.1/DImodels/man/sim4.Rd | 368 ++++++------ DImodels-1.2.1/DImodels/tests |only DImodels-1.2.1/DImodels/vignettes/DImodels.Rmd |only DImodels-1.2/DImodels/inst/doc/DImodels_Vignette.R |only DImodels-1.2/DImodels/inst/doc/DImodels_Vignette.Rmd |only DImodels-1.2/DImodels/inst/doc/DImodels_Vignette.html |only DImodels-1.2/DImodels/vignettes/DImodels_Vignette.Rmd |only 29 files changed, 1126 insertions(+), 1105 deletions(-)
Title: Improved Methods for Constructing Prediction Intervals for
Network Meta-Analysis
Description: Improved methods to construct prediction intervals for network meta-analysis. The parametric bootstrap and Kenward-Roger-type adjustment by Noma et al. (2022) <forthcoming> are implementable.
Author: Hisashi Noma [aut, cre]
Maintainer: Hisashi Noma <noma@ism.ac.jp>
Diff between PINMA versions 1.1-1 dated 2023-03-26 and 1.1-2 dated 2023-05-22
DESCRIPTION | 11 +++++------ MD5 | 6 +++--- NEWS.md | 17 +++++++++-------- R/KR.r | 2 +- 4 files changed, 18 insertions(+), 18 deletions(-)
Title: Outlier Detection and Influence Diagnostics for Meta-Analysis
Description: Computational tools for outlier detection and influence diagnostics of meta-analysis. Bootstrap distributions of the influence statistics are calculated, and the thresholds to determine outliers are explicitly provided.
Author: Hisashi Noma [aut, cre],
Masahiko Gosho [aut]
Maintainer: Hisashi Noma <noma@ism.ac.jp>
Diff between boutliers versions 1.1-1 dated 2020-11-04 and 1.1-2 dated 2023-05-22
boutliers-1.1-1/boutliers/R/ML.r |only boutliers-1.1-1/boutliers/R/ML_FE.r |only boutliers-1.1-1/boutliers/R/QT.r |only boutliers-1.1-1/boutliers/R/REML.r |only boutliers-1.1-1/boutliers/R/SML.r |only boutliers-1.1-1/boutliers/R/SML_FE.r |only boutliers-1.1-1/boutliers/R/convert-bin.r |only boutliers-1.1-1/boutliers/R/convert-mean.r |only boutliers-1.1-1/boutliers/R/util-check.r |only boutliers-1.1-1/boutliers/man/convert_bin.Rd |only boutliers-1.1-1/boutliers/man/convert_mean.Rd |only boutliers-1.1-2/boutliers/DESCRIPTION | 18 boutliers-1.1-2/boutliers/MD5 | 37 - boutliers-1.1-2/boutliers/NAMESPACE | 9 boutliers-1.1-2/boutliers/NEWS.md |only boutliers-1.1-2/boutliers/R/LRT.r | 393 +++++++++++++++++++++ boutliers-1.1-2/boutliers/build |only boutliers-1.1-2/boutliers/man/LRT.Rd | 12 boutliers-1.1-2/boutliers/man/LRT_FE.Rd | 13 boutliers-1.1-2/boutliers/man/PPI.Rd | 2 boutliers-1.1-2/boutliers/man/SMT.Rd | 2 boutliers-1.1-2/boutliers/man/STR.Rd | 13 boutliers-1.1-2/boutliers/man/STR_FE.Rd | 13 boutliers-1.1-2/boutliers/man/VRATIO.Rd | 14 boutliers-1.1-2/boutliers/man/boutliers-package.Rd | 9 boutliers-1.1-2/boutliers/man/finasteride.Rd | 2 26 files changed, 450 insertions(+), 87 deletions(-)
Title: Insolation for Palaeoclimate Studies
Description: R package to compute Incoming Solar Radiation (insolation) for palaeoclimate studies. Features three solutions: Berger (1978), Berger and Loutre (1991) and Laskar et al. (2004). Computes daily-mean, season-averaged and annual means and for all latitudes, and polar night dates.
Author: Michel Crucifix [aut, cre]
Maintainer: Michel Crucifix <michel.crucifix@uclouvain.be>
Diff between palinsol versions 0.93 dated 2016-03-04 and 1.0 dated 2023-05-21
CHANGES | 10 DESCRIPTION | 27 +- LICENSE | 29 +- MD5 | 44 ++- NAMESPACE | 28 +- R/Insol.R | 533 ++++++++++++++++++++++++++++++++++++++++++++--- R/astro.R | 284 +++++++++++++++---------- R/elliptint.R | 25 +- README.md | 8 data/BER78.rda |binary data/BER90.rda |binary data/LA04.rda |binary man/AnnualMean.Rd |only man/BER78.Rd | 11 man/Insol.Rd | 71 +++--- man/Insol_l1l2.Rd | 107 ++++++--- man/LA04.Rd | 3 man/Milankovitch.Rd | 69 +++--- man/astro.Rd | 136 +++++------ man/calins.Rd | 67 ++--- man/day2l.Rd | 90 ++++--- man/plot.Milankovitch.Rd | 47 ++-- man/polar_night.Rd |only man/thrins.Rd | 57 ++--- 24 files changed, 1147 insertions(+), 499 deletions(-)
Title: Species Distribution Modeling
Description: Methods for species distribution modeling, that is, predicting the environmental similarity of any site to that of the locations of known occurrences of a species.
Author: Robert J. Hijmans, Steven Phillips, John Leathwick and Jane Elith
Maintainer: Robert J. Hijmans <r.hijmans@gmail.com>
Diff between dismo versions 1.3-9 dated 2022-09-19 and 1.3-14 dated 2023-05-21
DESCRIPTION | 9 +++++---- MD5 | 22 +++++++++++----------- NAMESPACE | 6 +++--- R/circleHull.R | 2 +- R/plotEval.R | 2 +- R/voronoi.R | 2 +- build/partial.rdb |binary build/vignette.rds |binary inst/doc/sdm.pdf |binary man/ecocrop.Rd | 2 ++ man/ecolim.Rd | 1 + man/plot.Rd | 8 +++++++- 12 files changed, 32 insertions(+), 22 deletions(-)
Title: Hierarchical Multinomial Processing Tree Modeling
Description: User-friendly analysis of hierarchical multinomial processing tree (MPT)
models that are often used in cognitive psychology. Implements the latent-trait
MPT approach (Klauer, 2010) <DOI:10.1007/s11336-009-9141-0> and the beta-MPT
approach (Smith & Batchelder, 2010) <DOI:10.1016/j.jmp.2009.06.007> to model
heterogeneity of participants. MPT models are conveniently specified by an
.eqn-file as used by other MPT software and data are provided by a .csv-file
or directly in R. Models are either fitted by calling JAGS or by an MPT-tailored
Gibbs sampler in C++ (only for nonhierarchical and beta MPT models). Provides
tests of heterogeneity and MPT-tailored summaries and plotting functions.
A detailed documentation is available in Heck, Arnold, & Arnold (2018)
<DOI:10.3758/s13428-017-0869-7> and a tutorial on MPT modeling can be found
in Schmidt, Erdfelder, & Heck (2022) <DOI:10.31234/osf.io/gh8md>.
Author: Daniel W. Heck [aut, cre] ,
Nina R. Arnold [aut, dtc],
Denis Arnold [aut],
Alexander Ly [ctb],
Marius Barth [ctb]
Maintainer: Daniel W. Heck <daniel.heck@uni-marburg.de>
Diff between TreeBUGS versions 1.4.9 dated 2022-09-06 and 1.5.0 dated 2023-05-21
TreeBUGS-1.4.9/TreeBUGS/R/CollectionOfInputProcessingFunctions.R |only TreeBUGS-1.5.0/TreeBUGS/DESCRIPTION | 27 TreeBUGS-1.5.0/TreeBUGS/MD5 | 224 +++--- TreeBUGS-1.5.0/TreeBUGS/NAMESPACE | 3 TreeBUGS-1.5.0/TreeBUGS/NEWS | 9 TreeBUGS-1.5.0/TreeBUGS/R/BF_Rao_Blackwell.R | 170 ++-- TreeBUGS-1.5.0/TreeBUGS/R/BF_auxiliary.R | 66 + TreeBUGS-1.5.0/TreeBUGS/R/BF_likelihoods.R | 33 TreeBUGS-1.5.0/TreeBUGS/R/BF_marginalMPT.R | 239 ++++-- TreeBUGS-1.5.0/TreeBUGS/R/BFslope.R | 267 ++++--- TreeBUGS-1.5.0/TreeBUGS/R/PPP.R | 255 +++--- TreeBUGS-1.5.0/TreeBUGS/R/T1perGroup.R | 28 TreeBUGS-1.5.0/TreeBUGS/R/TreeBUGS-package.R | 18 TreeBUGS-1.5.0/TreeBUGS/R/WAIC.R | 168 +++- TreeBUGS-1.5.0/TreeBUGS/R/arnold2013.R | 40 - TreeBUGS-1.5.0/TreeBUGS/R/betweenSubjects.R | 133 ++- TreeBUGS-1.5.0/TreeBUGS/R/callingSampler.R | 267 ++++--- TreeBUGS-1.5.0/TreeBUGS/R/checkFunctions.R | 60 - TreeBUGS-1.5.0/TreeBUGS/R/corSamples.R | 40 - TreeBUGS-1.5.0/TreeBUGS/R/correlationBayes.R | 66 - TreeBUGS-1.5.0/TreeBUGS/R/correlationBayesMCMC.R | 193 +++-- TreeBUGS-1.5.0/TreeBUGS/R/covCorrelationString.R | 63 - TreeBUGS-1.5.0/TreeBUGS/R/covDataRead.R | 66 - TreeBUGS-1.5.0/TreeBUGS/R/covFactor.R | 18 TreeBUGS-1.5.0/TreeBUGS/R/covPredictorHandling.R | 169 ++-- TreeBUGS-1.5.0/TreeBUGS/R/covariateHandling.R | 114 +-- TreeBUGS-1.5.0/TreeBUGS/R/extendMPT.R | 78 +- TreeBUGS-1.5.0/TreeBUGS/R/fitBetaMPT.R | 276 ++++--- TreeBUGS-1.5.0/TreeBUGS/R/fitBetaMPTcpp.R | 65 + TreeBUGS-1.5.0/TreeBUGS/R/fitModel.R | 259 +++---- TreeBUGS-1.5.0/TreeBUGS/R/fitModelCpp.R | 289 ++++--- TreeBUGS-1.5.0/TreeBUGS/R/fitSimpleMPT.R | 70 + TreeBUGS-1.5.0/TreeBUGS/R/fitTraitMPT.R | 337 ++++----- TreeBUGS-1.5.0/TreeBUGS/R/genDataBeta.R | 118 +-- TreeBUGS-1.5.0/TreeBUGS/R/genDataCheck.R | 105 +- TreeBUGS-1.5.0/TreeBUGS/R/genDataMPT.R | 102 +- TreeBUGS-1.5.0/TreeBUGS/R/genDataTrait.R | 150 ++-- TreeBUGS-1.5.0/TreeBUGS/R/getGroupMeans.R | 138 ++- TreeBUGS-1.5.0/TreeBUGS/R/getParam.R | 103 +- TreeBUGS-1.5.0/TreeBUGS/R/getSamples.R | 48 - TreeBUGS-1.5.0/TreeBUGS/R/input_functions.R |only TreeBUGS-1.5.0/TreeBUGS/R/makeModelDescription.R | 182 ++-- TreeBUGS-1.5.0/TreeBUGS/R/parseEQN.R | 79 +- TreeBUGS-1.5.0/TreeBUGS/R/parseRestrictions.R | 74 -- TreeBUGS-1.5.0/TreeBUGS/R/plotConvergence.R | 78 +- TreeBUGS-1.5.0/TreeBUGS/R/plotDistribution.R | 88 +- TreeBUGS-1.5.0/TreeBUGS/R/plotFit.R | 86 +- TreeBUGS-1.5.0/TreeBUGS/R/plotFrequencies.R | 117 +-- TreeBUGS-1.5.0/TreeBUGS/R/plotParameters.R | 86 +- TreeBUGS-1.5.0/TreeBUGS/R/plotPrior.R | 149 ++-- TreeBUGS-1.5.0/TreeBUGS/R/plotPriorPost.R | 152 ++-- TreeBUGS-1.5.0/TreeBUGS/R/posteriorPredictive.R | 189 ++--- TreeBUGS-1.5.0/TreeBUGS/R/printMPT.R | 92 +- TreeBUGS-1.5.0/TreeBUGS/R/priorPredictive.R | 125 ++- TreeBUGS-1.5.0/TreeBUGS/R/probitInverse.R | 85 +- TreeBUGS-1.5.0/TreeBUGS/R/readEQN.R | 153 ++-- TreeBUGS-1.5.0/TreeBUGS/R/renameBUGSoutput.R | 7 TreeBUGS-1.5.0/TreeBUGS/R/sampleHyperprior.R | 146 ++- TreeBUGS-1.5.0/TreeBUGS/R/summarizeMCMC.R | 77 +- TreeBUGS-1.5.0/TreeBUGS/R/summarizeMPT.R | 220 +++-- TreeBUGS-1.5.0/TreeBUGS/R/testHetChi.R | 93 +- TreeBUGS-1.5.0/TreeBUGS/R/testHetPerm.R | 146 ++- TreeBUGS-1.5.0/TreeBUGS/R/thetaHandling.R | 156 ++-- TreeBUGS-1.5.0/TreeBUGS/R/transformedParModelfile.R | 100 +- TreeBUGS-1.5.0/TreeBUGS/R/transformedParPosthoc.R | 125 +-- TreeBUGS-1.5.0/TreeBUGS/R/within_subject_EQN.R | 58 + TreeBUGS-1.5.0/TreeBUGS/R/writeSummaryToFile.R | 19 TreeBUGS-1.5.0/TreeBUGS/build/vignette.rds |binary TreeBUGS-1.5.0/TreeBUGS/inst/doc/TreeBUGS_1_intro.R | 58 - TreeBUGS-1.5.0/TreeBUGS/inst/doc/TreeBUGS_1_intro.Rmd | 60 - TreeBUGS-1.5.0/TreeBUGS/inst/doc/TreeBUGS_1_intro.html | 181 ++-- TreeBUGS-1.5.0/TreeBUGS/inst/doc/TreeBUGS_2_extended.R | 64 - TreeBUGS-1.5.0/TreeBUGS/inst/doc/TreeBUGS_2_extended.Rmd | 70 + TreeBUGS-1.5.0/TreeBUGS/inst/doc/TreeBUGS_2_extended.html | 192 ++--- TreeBUGS-1.5.0/TreeBUGS/man/BayesFactorMPT.Rd | 42 - TreeBUGS-1.5.0/TreeBUGS/man/BayesFactorSlope.Rd | 61 - TreeBUGS-1.5.0/TreeBUGS/man/PPP.Rd | 13 TreeBUGS-1.5.0/TreeBUGS/man/TreeBUGS-package.Rd | 9 TreeBUGS-1.5.0/TreeBUGS/man/WAIC.Rd | 183 ++-- TreeBUGS-1.5.0/TreeBUGS/man/arnold2013.Rd | 37 - TreeBUGS-1.5.0/TreeBUGS/man/betaMPT.Rd | 202 ++--- TreeBUGS-1.5.0/TreeBUGS/man/betaMPTcpp.Rd | 73 + TreeBUGS-1.5.0/TreeBUGS/man/betweenSubjectMPT.Rd | 20 TreeBUGS-1.5.0/TreeBUGS/man/correlationPosterior.Rd | 72 + TreeBUGS-1.5.0/TreeBUGS/man/extendMPT.Rd | 26 TreeBUGS-1.5.0/TreeBUGS/man/genBetaMPT.Rd | 65 - TreeBUGS-1.5.0/TreeBUGS/man/genMPT.Rd | 46 - TreeBUGS-1.5.0/TreeBUGS/man/genTraitMPT.Rd | 99 +- TreeBUGS-1.5.0/TreeBUGS/man/getGroupMeans.Rd | 16 TreeBUGS-1.5.0/TreeBUGS/man/getParam.Rd | 28 TreeBUGS-1.5.0/TreeBUGS/man/getSamples.Rd | 17 TreeBUGS-1.5.0/TreeBUGS/man/marginalMPT.Rd | 82 +- TreeBUGS-1.5.0/TreeBUGS/man/plotDistribution.Rd | 23 TreeBUGS-1.5.0/TreeBUGS/man/plotFit.Rd | 17 TreeBUGS-1.5.0/TreeBUGS/man/plotFreq.Rd | 22 TreeBUGS-1.5.0/TreeBUGS/man/plotParam.Rd | 8 TreeBUGS-1.5.0/TreeBUGS/man/plotPrior.Rd | 42 - TreeBUGS-1.5.0/TreeBUGS/man/plotPriorPost.Rd | 14 TreeBUGS-1.5.0/TreeBUGS/man/posteriorPredictive.Rd | 2 TreeBUGS-1.5.0/TreeBUGS/man/priorPredictive.Rd | 80 +- TreeBUGS-1.5.0/TreeBUGS/man/probitInverse.Rd | 17 TreeBUGS-1.5.0/TreeBUGS/man/readEQN.Rd | 74 +- TreeBUGS-1.5.0/TreeBUGS/man/simpleMPT.Rd | 60 - TreeBUGS-1.5.0/TreeBUGS/man/summarizeMCMC.Rd | 5 TreeBUGS-1.5.0/TreeBUGS/man/summarizeMPT.Rd | 15 TreeBUGS-1.5.0/TreeBUGS/man/testHetChi.Rd | 44 - TreeBUGS-1.5.0/TreeBUGS/man/testHetPerm.Rd | 59 + TreeBUGS-1.5.0/TreeBUGS/man/traitMPT.Rd | 367 +++++----- TreeBUGS-1.5.0/TreeBUGS/man/transformedParameters.Rd | 15 TreeBUGS-1.5.0/TreeBUGS/man/withinSubjectEQN.Rd | 25 TreeBUGS-1.5.0/TreeBUGS/tests/testthat/test_genMPT.R | 120 +-- TreeBUGS-1.5.0/TreeBUGS/tests/testthat/test_readEQN.R | 15 TreeBUGS-1.5.0/TreeBUGS/vignettes/TreeBUGS_1_intro.Rmd | 60 - TreeBUGS-1.5.0/TreeBUGS/vignettes/TreeBUGS_2_extended.Rmd | 70 + 114 files changed, 6069 insertions(+), 4557 deletions(-)
Title: Generative Art with 'ggplot2'
Description: Provides algorithms for creating artworks in the 'ggplot2' language that incorporate some form of randomness.
Author: Koen Derks [aut, cre]
Maintainer: Koen Derks <koen-derks@hotmail.com>
Diff between aRtsy versions 0.2.2 dated 2023-04-23 and 0.2.3 dated 2023-05-21
DESCRIPTION | 10 MD5 | 198 ++--- NAMESPACE | 2 NEWS.md | 7 R/RcppExports.R | 104 +- R/canvas_ant.R | 66 + R/canvas_blacklight.R | 32 R/canvas_chladni.R | 74 +- R/canvas_circlemap.R | 46 - R/canvas_cobweb.R | 41 - R/canvas_collatz.R | 59 + R/canvas_diamonds.R | 26 R/canvas_flame.R | 52 - R/canvas_flow.R | 68 + R/canvas_forest.R | 12 R/canvas_function.R | 22 R/canvas_gemstone.R | 10 R/canvas_mandelbrot.R | 24 R/canvas_maze.R | 56 - R/canvas_mesh.R | 24 R/canvas_mosaic.R | 12 R/canvas_nebula.R | 12 R/canvas_petri.R | 50 - R/canvas_phyllotaxis.R | 24 R/canvas_planet.R | 31 R/canvas_polylines.R | 20 R/canvas_recaman.R | 30 R/canvas_ribbons.R | 22 R/canvas_segments.R | 20 R/canvas_smoke.R | 22 R/canvas_splits.R | 26 R/canvas_squares.R | 24 R/canvas_stripes.R | 18 R/canvas_strokes.R | 26 R/canvas_swirls.R |only R/canvas_tiles.R |only R/canvas_turmite.R | 20 R/canvas_watercolors.R | 28 R/colorPalette.R | 37 - R/internal.R | 2 R/theme_canvas.R | 2 README.md | 138 ++- inst/CITATION | 4 man/canvas_ant.Rd | 43 - man/canvas_blacklight.Rd | 24 man/canvas_chladni.Rd | 59 + man/canvas_circlemap.Rd | 30 man/canvas_cobweb.Rd | 19 man/canvas_collatz.Rd | 32 man/canvas_diamonds.Rd | 11 man/canvas_flame.Rd | 21 man/canvas_flow.Rd | 30 man/canvas_forest.Rd | 6 man/canvas_function.Rd | 9 man/canvas_gemstone.Rd | 6 man/canvas_mandelbrot.Rd | 15 man/canvas_maze.Rd | 9 man/canvas_mesh.Rd | 13 man/canvas_mosaic.Rd | 6 man/canvas_nebula.Rd | 7 man/canvas_petri.Rd | 10 man/canvas_phyllotaxis.Rd | 11 man/canvas_planet.Rd | 18 man/canvas_polylines.Rd | 10 man/canvas_recaman.Rd | 14 man/canvas_ribbons.Rd | 6 man/canvas_segments.Rd | 10 man/canvas_smoke.Rd | 9 man/canvas_splits.Rd | 10 man/canvas_squares.Rd | 10 man/canvas_stripes.Rd | 7 man/canvas_strokes.Rd | 10 man/canvas_swirls.Rd |only man/canvas_tiles.Rd |only man/canvas_turmite.Rd | 10 man/canvas_watercolors.Rd | 9 man/colorPalette.Rd | 5 man/figures/colors.pdf |binary man/figures/colors.svg | 1307 ++++++++++++++++++------------------ src/RcppExports.cpp | 326 ++++---- src/canvas_ant.cpp | 8 src/canvas_chladni.cpp | 6 src/canvas_circlemap.cpp | 12 src/canvas_collatz.cpp | 10 src/canvas_flame.cpp | 46 - src/canvas_flow.cpp | 40 - src/canvas_maze.cpp | 67 - src/canvas_mesh.cpp | 28 src/canvas_petri.cpp | 38 - src/canvas_phyllotaxis.cpp | 13 src/canvas_planet.cpp | 30 src/canvas_polylines.cpp | 68 - src/canvas_recaman.cpp | 15 src/canvas_smoke.cpp | 58 - src/canvas_splits.cpp | 80 -- src/canvas_squares.cpp | 13 src/canvas_strokes.cpp | 8 src/canvas_swirls.cpp |only src/canvas_tiles.cpp |only src/canvas_turmite.cpp | 10 src/canvas_watercolors.cpp | 14 src/noise.cpp | 18 tests/testthat/test-all-paintings.R | 16 103 files changed, 2552 insertions(+), 1669 deletions(-)
Title: Bayesian Inference for Beta Regression and Zero-or-One Inflated
Beta Regression
Description: Fits beta regression and zero-or-one inflated beta regression and obtains Bayesian Inference of the model via the Markov Chain Monte Carlo approach implemented in JAGS.
Author: Fang Liu <fang.liu.131@nd.edu> with contributions from Yunchuan Kong
Maintainer: Fang Liu <fang.liu.131@nd.edu>
Diff between zoib versions 1.5.5 dated 2021-05-29 and 1.6 dated 2023-05-21
DESCRIPTION | 8 - MD5 | 42 ++++---- R/joint.1z.R | 19 ++- R/joint.1z0.R | 28 +++-- R/joint.1z01.R | 36 +++---- R/joint.1z1.R | 35 +++---- R/joint.2z0.R | 73 +++++++------- R/joint.2z01.R | 88 +++++++++-------- R/joint.2z1.R | 73 +++++++------- R/sep.1z.R | 2 R/sep.2z0.R | 5 - R/zoib.R | 231 +++++++++++++++++++++++++++++++---------------- inst/bugs/joint_1z.bug | 2 inst/bugs/joint_1z0.bug | 12 +- inst/bugs/joint_1z01.bug | 28 ++--- inst/bugs/joint_1z1.bug | 9 - inst/bugs/joint_2z0.bug | 8 - inst/bugs/joint_2z01.bug | 4 inst/bugs/joint_2z1.bug | 3 man/zoib-package.Rd | 4 tests/test1.R | 4 tests/test2.R | 10 +- 22 files changed, 410 insertions(+), 314 deletions(-)