Thu, 23 May 2024

Package GofCens updated to version 1.0 with previous version 0.98 dated 2024-03-22

Title: Goodness-of-Fit Methods for Complete and Right-Censored Data
Description: Graphical tools and goodness-of-fit tests for complete and right-censored data: 1. Kolmogorov-Smirnov, Cramér-von Mises, and Anderson-Darling tests, which use the empirical distribution function for complete data and are extended for right-censored data. 2. Generalized chi-squared-type test, which is based on the squared differences between observed and expected counts using random cells with right-censored data. 3. A series of graphical tools such as probability or cumulative hazard plots to guide the decision about the most suitable parametric model for the data.
Author: Klaus Langohr [aut, cre], Mireia Besalu [aut], Matilde Francisco [aut], Guadalupe Gomez [aut]
Maintainer: Klaus Langohr <klaus.langohr@upc.edu>

Diff between GofCens versions 0.98 dated 2024-03-22 and 1.0 dated 2024-05-23

 DESCRIPTION            |   12 -
 MD5                    |   34 +--
 NAMESPACE              |    7 
 R/ADcens.R             |  352 +++++++++++++++++++++++++++++------------
 R/CvMcens.R            |  354 +++++++++++++++++++++++++++++------------
 R/KScens.R             |  417 ++++++++++++++++++++++++++++---------------------
 R/chisqcens.R          |  381 +++++++++++++++++++++++++++++++-------------
 R/cumhazPlot.R         |   19 +-
 R/gofcens.R            |  364 ++++++++++++++++++++++++------------------
 R/kmPlot.R             |   21 +-
 R/probPlot.R           |  263 ++++++++++++++++++++----------
 man/ADcens.Rd          |   21 +-
 man/CvMcens.Rd         |   24 +-
 man/GofCens-package.Rd |    4 
 man/KScens.Rd          |   21 +-
 man/chisqcens.Rd       |   15 -
 man/gofcens.Rd         |   14 -
 man/probPlot.Rd        |   48 ++---
 18 files changed, 1528 insertions(+), 843 deletions(-)

More information about GofCens at CRAN
Permanent link

Package archetypal updated to version 1.3.1 with previous version 1.3.0 dated 2022-07-04

Title: Finds the Archetypal Analysis of a Data Frame
Description: Performs archetypal analysis by using Principal Convex Hull Analysis under a full control of all algorithmic parameters. It contains a set of functions for determining the initial solution, the optimal algorithmic parameters and the optimal number of archetypes. Post run tools are also available for the assessment of the derived solution. Morup, M., Hansen, LK (2012) <doi:10.1016/j.neucom.2011.06.033>. Hochbaum, DS, Shmoys, DB (1985) <doi:10.1287/moor.10.2.180>. Eddy, WF (1977) <doi:10.1145/355759.355768>. Barber, CB, Dobkin, DP, Huhdanpaa, HT (1996) <doi:10.1145/235815.235821>. Christopoulos, DT (2016) <doi:10.2139/ssrn.3043076>. Falk, A., Becker, A., Dohmen, T., Enke, B., Huffman, D., Sunde, U. (2018), <doi:10.1093/qje/qjy013>. Christopoulos, DT (2015) <doi:10.1016/j.jastp.2015.03.009> . Murari, A., Peluso, E., Cianfrani, Gaudio, F., Lungaroni, M., (2019), <doi:10.3390/e21040394>.
Author: Demetris Christopoulos [aut, cre], David Midgley [ctb], Sunil Venaik [ctb], INSEAD Fontainebleau France [fnd]
Maintainer: Demetris Christopoulos <dchristop@econ.uoa.gr>

Diff between archetypal versions 1.3.0 dated 2022-07-04 and 1.3.1 dated 2024-05-23

 DESCRIPTION                    |   10 
 MD5                            |   54 +-
 NEWS.md                        |    9 
 R/archetypal.R                 |    2 
 R/plot.archetypal.R            |   12 
 R/plot_archs.R                 |   18 
 R/study_AAconvergence.R        |    2 
 R/summary.archetypal.R         |    2 
 build/vignette.rds             |binary
 data/AbsoluteTemperature.RData |binary
 data/gallupGPS6.RData          |binary
 data/wd2.RData                 |binary
 data/wd25.RData                |binary
 data/wd3.RData                 |binary
 inst/doc/archetypal.R          |    2 
 inst/doc/archetypal.Rmd        |    2 
 inst/doc/archetypal.html       |  859 ++++++++++++++++++++++-------------------
 man/FurthestSum.Rd             |    2 
 man/archetypal-package.Rd      |    4 
 man/archetypal.Rd              |   44 +-
 man/check_Bmatrix.Rd           |   34 -
 man/find_closer_points.Rd      |    2 
 man/gallupGPS6.Rd              |    9 
 man/kappa_tools.Rd             |   17 
 man/plot.kappa_tools.Rd        |    2 
 man/plot_archs.Rd              |    2 
 man/study_AAconvergence.Rd     |   52 +-
 vignettes/archetypal.Rmd       |    2 
 28 files changed, 611 insertions(+), 531 deletions(-)

More information about archetypal at CRAN
Permanent link

Package predhy updated to version 2.1.1 with previous version 2.1.0 dated 2024-03-29

Title: Genomic Prediction of Hybrid Performance
Description: Performs genomic prediction of hybrid performance using eight GS methods including GBLUP, BayesB, RKHS, PLS, LASSO, Elastic net, LightGBM and XGBoost. It also provides fast cross-validation and mating design scheme for training population (Xu S et al (2016) <doi:10.1111/tpj.13242>; Xu S (2017) <doi:10.1534/g3.116.038059>).
Author: Yang Xu, Guangning Yu, Yanru Cui, Shizhong Xu, Chenwu Xu
Maintainer: Yang Xu <xuyang_89@126.com>

Diff between predhy versions 2.1.0 dated 2024-03-29 and 2.1.1 dated 2024-05-23

 DESCRIPTION                |    6 +-
 MD5                        |   14 ++--
 R/cv.R                     |  135 ++++++++++++++++++++++++---------------------
 R/predhy.predict.R         |  109 +++++++++++++++++-------------------
 R/predhy.predict_NCII.R    |   27 ++++-----
 man/cv.Rd                  |   15 ++---
 man/predhy.predict.Rd      |   15 ++---
 man/predhy.predict_NCII.Rd |   13 +---
 8 files changed, 165 insertions(+), 169 deletions(-)

More information about predhy at CRAN
Permanent link

Package iMRMC updated to version 2.0.0 with previous version 1.2.5 dated 2023-05-15

Title: Multi-Reader, Multi-Case Analysis Methods (ROC, Agreement, and Other Metrics)
Description: This software does Multi-Reader, Multi-Case (MRMC) analyses of data from imaging studies where clinicians (readers) evaluate patient images (cases). What does this mean? ... Many imaging studies are designed so that every reader reads every case in all modalities, a fully-crossed study. In this case, the data is cross-correlated, and we consider the readers and cases to be cross-correlated random effects. An MRMC analysis accounts for the variability and correlations from the readers and cases when estimating variances, confidence intervals, and p-values. The functions in this package can treat arbitrary study designs and studies with missing data, not just fully-crossed study designs. An overview of this software, including references presenting details on the methods, can be found here: <https://www.fda.gov/medical-devices/science-and-research-medical-devices/imrmc-software-do-multi-reader-multi-case-statistical-analysis-reader-studies>.
Author: Brandon Gallas
Maintainer: Brandon Gallas <Brandon.Gallas@fda.hhs.gov>

Diff between iMRMC versions 1.2.5 dated 2023-05-15 and 2.0.0 dated 2024-05-23

 iMRMC-1.2.5/iMRMC/R/iMRMC.R                                  |only
 iMRMC-1.2.5/iMRMC/man/convertDF.Rd                           |only
 iMRMC-1.2.5/iMRMC/tests/testthat/doIMRMCquickTest.R          |only
 iMRMC-1.2.5/iMRMC/tests/testthat/test_doIMRMC.R              |only
 iMRMC-1.2.5/iMRMC/tests/testthat/test_doIMRMC.Rdata          |only
 iMRMC-1.2.5/iMRMC/tests/testthat/test_doIMRMCfromFile.R      |only
 iMRMC-2.0.0/iMRMC/DESCRIPTION                                |   27 
 iMRMC-2.0.0/iMRMC/MD5                                        |   88 
 iMRMC-2.0.0/iMRMC/NAMESPACE                                  |    8 
 iMRMC-2.0.0/iMRMC/NEWS.md                                    |   36 
 iMRMC-2.0.0/iMRMC/R/data.R                                   |only
 iMRMC-2.0.0/iMRMC/R/doAUCMRMC.R                              |only
 iMRMC-2.0.0/iMRMC/R/doROCcurveMRMC.R                         |only
 iMRMC-2.0.0/iMRMC/R/iMRMC_R.R                                |only
 iMRMC-2.0.0/iMRMC/R/iMRMC_java.R                             |only
 iMRMC-2.0.0/iMRMC/R/limitsOfAgreement.R                      |  111 
 iMRMC-2.0.0/iMRMC/R/simMRMC.R                                |  243 -
 iMRMC-2.0.0/iMRMC/R/uStats.R                                 |  234 -
 iMRMC-2.0.0/iMRMC/R/utils.R                                  |  355 +-
 iMRMC-2.0.0/iMRMC/data/dfMRMC_example.rda                    |only
 iMRMC-2.0.0/iMRMC/inst/extra/man/iMRMC_2.0.0.pdf             |only
 iMRMC-2.0.0/iMRMC/man/convertDFtoDesignMatrix.Rd             |    2 
 iMRMC-2.0.0/iMRMC/man/convertDFtoScoreMatrix.Rd              |    2 
 iMRMC-2.0.0/iMRMC/man/createIMRMCdf.Rd                       |    3 
 iMRMC-2.0.0/iMRMC/man/deleteCol.Rd                           |only
 iMRMC-2.0.0/iMRMC/man/dfMRMC_example.Rd                      |only
 iMRMC-2.0.0/iMRMC/man/doAUCmrmc.Rd                           |only
 iMRMC-2.0.0/iMRMC/man/doIMRMC.Rd                             |  160 
 iMRMC-2.0.0/iMRMC/man/doIMRMC_java.Rd                        |only
 iMRMC-2.0.0/iMRMC/man/doROCavg.Rd                            |only
 iMRMC-2.0.0/iMRMC/man/doROCcurveMRMC.Rd                      |only
 iMRMC-2.0.0/iMRMC/man/doROCxy.Rd                             |only
 iMRMC-2.0.0/iMRMC/man/doROCxyMRMC.Rd                         |only
 iMRMC-2.0.0/iMRMC/man/extractPairedComparisonsWRBM.Rd        |    4 
 iMRMC-2.0.0/iMRMC/man/getBRBM.Rd                             |    4 
 iMRMC-2.0.0/iMRMC/man/getMRMCdataset.Rd                      |only
 iMRMC-2.0.0/iMRMC/man/getWRBM.Rd                             |   10 
 iMRMC-2.0.0/iMRMC/man/init.lecuyerRNG.Rd                     |    2 
 iMRMC-2.0.0/iMRMC/man/laBRBM.Rd                              |   12 
 iMRMC-2.0.0/iMRMC/man/laWRBM.Rd                              |   14 
 iMRMC-2.0.0/iMRMC/man/roc2binary.Rd                          |   11 
 iMRMC-2.0.0/iMRMC/man/roeMetzConfigs.Rd                      |   58 
 iMRMC-2.0.0/iMRMC/man/sim.gRoeMetz.Rd                        |   71 
 iMRMC-2.0.0/iMRMC/man/sim.gRoeMetz.config.Rd                 |    2 
 iMRMC-2.0.0/iMRMC/man/simMRMC.Rd                             |   12 
 iMRMC-2.0.0/iMRMC/man/simRoeMetz.example.Rd                  |    2 
 iMRMC-2.0.0/iMRMC/man/uStat11.Rd                             |   12 
 iMRMC-2.0.0/iMRMC/tests/testthat/Rplots.pdf                  |binary
 iMRMC-2.0.0/iMRMC/tests/testthat/drafts                      |only
 iMRMC-2.0.0/iMRMC/tests/testthat/input.imrmc                 | 1764 +++++------
 iMRMC-2.0.0/iMRMC/tests/testthat/test_createANDundoIMRMCdf.R |   61 
 iMRMC-2.0.0/iMRMC/tests/testthat/test_doIMRMC_R1.R           |only
 iMRMC-2.0.0/iMRMC/tests/testthat/test_doIMRMC_R1.rda         |only
 iMRMC-2.0.0/iMRMC/tests/testthat/test_doIMRMC_R2.R           |only
 iMRMC-2.0.0/iMRMC/tests/testthat/test_doIMRMC_R2.rda         |only
 iMRMC-2.0.0/iMRMC/tests/testthat/test_doIMRMC_R3.R           |only
 iMRMC-2.0.0/iMRMC/tests/testthat/test_doIMRMC_R3.rda         |only
 iMRMC-2.0.0/iMRMC/tests/testthat/test_roc2binary.R           |only
 58 files changed, 1724 insertions(+), 1584 deletions(-)

More information about iMRMC at CRAN
Permanent link

Package healthyR.data updated to version 1.1.0 with previous version 1.0.3 dated 2023-05-05

Title: Data Only Package to 'healthyR'
Description: Provides data for functions typically used in the 'healthyR' package.
Author: Steven Sanderson [aut, cre, cph]
Maintainer: Steven Sanderson <spsanderson@gmail.com>

Diff between healthyR.data versions 1.0.3 dated 2023-05-05 and 1.1.0 dated 2024-05-23

 DESCRIPTION                      |   12 +-
 MD5                              |   61 ++++++-----
 NAMESPACE                        |    4 
 NEWS.md                          |   15 ++
 R/00-global-variables.R          |only
 R/dl-cms-data.R                  |only
 R/dl-cur-hosp-data-dict.R        |  130 ++++++++++++-------------
 R/dl-cur-hosp-data.R             |  199 +++++++++++++++++++--------------------
 R/dl-provider-data.R             |only
 R/get-cms-meta-data.R            |only
 R/get-cur-asc-data.R             |  158 +++++++++++++++---------------
 R/get-cur-asc-qr-data.R          |  166 ++++++++++++++++----------------
 R/get-cur-comp-death-data.R      |  166 ++++++++++++++++----------------
 R/get-cur-hai-data.R             |  166 ++++++++++++++++----------------
 R/get-cur-hcahps-data.R          |  168 ++++++++++++++++----------------
 R/get-cur-hvbp-data.R            |  174 +++++++++++++++++-----------------
 R/get-cur-image-efficiency.R     |  166 ++++++++++++++++----------------
 R/get-cur-maternal-data.R        |  166 ++++++++++++++++----------------
 R/get-cur-opqr-data.R            |  166 ++++++++++++++++----------------
 R/get-cur-payment-data.R         |  166 ++++++++++++++++----------------
 R/get-cur-pch-hcahps-data.R      |  166 ++++++++++++++++----------------
 R/get-cur-pch-oncology-data.R    |  126 ++++++++++++------------
 R/get-cur-pch-outcomes-data.R    |  162 +++++++++++++++----------------
 R/get-cur-pchhai-hosp-data.R     |  126 ++++++++++++------------
 R/get-cur-timely-eff-care-data.R |  166 ++++++++++++++++----------------
 R/get-cur-unplanned-hosp-data.R  |  166 ++++++++++++++++----------------
 R/get-cur-va-data.R              |  170 ++++++++++++++++-----------------
 R/get-provider-meta-data.R       |only
 README.md                        |    3 
 man/current_hosp_data.Rd         |    5 
 man/current_hosp_data_dict.Rd    |   74 +++++++-------
 man/current_va_data.Rd           |  142 +++++++++++++--------------
 man/fetch_cms_data.Rd            |only
 man/fetch_provider_data.Rd       |only
 man/get_cms_meta_data.Rd         |only
 man/get_provider_meta_data.Rd    |only
 36 files changed, 1711 insertions(+), 1678 deletions(-)

More information about healthyR.data at CRAN
Permanent link

Package incidence2 updated to version 2.3.0 with previous version 2.2.3 dated 2023-12-05

Title: Compute, Handle and Plot Incidence of Dated Events
Description: Provides functions and classes to compute, handle and visualise incidence from dated events for a defined time interval. Dates can be provided in various standard formats. The class 'incidence2' is used to store computed incidence and can be easily manipulated, subsetted, and plotted. This package is part of the RECON (<https://www.repidemicsconsortium.org/>) toolkit for outbreak analysis (<https://www.reconverse.org>).
Author: Tim Taylor [aut, cre] , Thibaut Jombart [ctb]
Maintainer: Tim Taylor <tim.taylor@hiddenelephants.co.uk>

Diff between incidence2 versions 2.2.3 dated 2023-12-05 and 2.3.0 dated 2024-05-23

 incidence2-2.2.3/incidence2/R/coercion.R                               |only
 incidence2-2.2.3/incidence2/R/s3_register.R                            |only
 incidence2-2.2.3/incidence2/R/zzz.R                                    |only
 incidence2-2.2.3/incidence2/man/print.incidence2.Rd                    |only
 incidence2-2.2.3/incidence2/man/s3_register.Rd                         |only
 incidence2-2.3.0/incidence2/DESCRIPTION                                |   17 
 incidence2-2.3.0/incidence2/MD5                                        |  106 
 incidence2-2.3.0/incidence2/NAMESPACE                                  |   33 
 incidence2-2.3.0/incidence2/NEWS.md                                    |  160 
 incidence2-2.3.0/incidence2/R/accessors.R                              |    5 
 incidence2-2.3.0/incidence2/R/as.data.frame.R                          |only
 incidence2-2.3.0/incidence2/R/as.data.table.R                          |only
 incidence2-2.3.0/incidence2/R/as_incidence.R                           |only
 incidence2-2.3.0/incidence2/R/as_tibble.R                              |only
 incidence2-2.3.0/incidence2/R/bootstrap.R                              |only
 incidence2-2.3.0/incidence2/R/complete_dates.R                         |   14 
 incidence2-2.3.0/incidence2/R/cumulate.R                               |    7 
 incidence2-2.3.0/incidence2/R/estimate_peak.R                          |only
 incidence2-2.3.0/incidence2/R/incidence.R                              |  444 +-
 incidence2-2.3.0/incidence2/R/incidence2-package.R                     |    4 
 incidence2-2.3.0/incidence2/R/keep.R                                   |   27 
 incidence2-2.3.0/incidence2/R/mutate.R                                 |only
 incidence2-2.3.0/incidence2/R/nest.R                                   |only
 incidence2-2.3.0/incidence2/R/palettes.R                               |    4 
 incidence2-2.3.0/incidence2/R/plot.R                                   |   37 
 incidence2-2.3.0/incidence2/R/printing.R                               |   36 
 incidence2-2.3.0/incidence2/R/rbind.R                                  |only
 incidence2-2.3.0/incidence2/R/regroup.R                                |   98 
 incidence2-2.3.0/incidence2/R/split.R                                  |only
 incidence2-2.3.0/incidence2/R/subset.R                                 |   28 
 incidence2-2.3.0/incidence2/R/summarise.R                              |only
 incidence2-2.3.0/incidence2/R/summary.R                                |    5 
 incidence2-2.3.0/incidence2/R/utils.R                                  |   22 
 incidence2-2.3.0/incidence2/README.md                                  |   27 
 incidence2-2.3.0/incidence2/build/vignette.rds                         |binary
 incidence2-2.3.0/incidence2/inst/doc/incidence2.R                      |  264 -
 incidence2-2.3.0/incidence2/inst/doc/incidence2.Rmd                    |  602 +-
 incidence2-2.3.0/incidence2/inst/doc/incidence2.html                   | 2121 +++++-----
 incidence2-2.3.0/incidence2/man/accessors.Rd                           |    5 
 incidence2-2.3.0/incidence2/man/as.data.frame.incidence2.Rd            |   10 
 incidence2-2.3.0/incidence2/man/as.data.table.incidence2.Rd            |only
 incidence2-2.3.0/incidence2/man/as_incidence.Rd                        |    2 
 incidence2-2.3.0/incidence2/man/as_tibble.incidence2.Rd                |only
 incidence2-2.3.0/incidence2/man/bootstrap_incidence.Rd                 |only
 incidence2-2.3.0/incidence2/man/complete_dates.Rd                      |   13 
 incidence2-2.3.0/incidence2/man/cumulate.Rd                            |    7 
 incidence2-2.3.0/incidence2/man/estimate_peak.Rd                       |only
 incidence2-2.3.0/incidence2/man/incidence.Rd                           |   58 
 incidence2-2.3.0/incidence2/man/incidence_.Rd                          |only
 incidence2-2.3.0/incidence2/man/keep.Rd                                |   21 
 incidence2-2.3.0/incidence2/man/mutate.incidence2.Rd                   |only
 incidence2-2.3.0/incidence2/man/nest.incidence2.Rd                     |only
 incidence2-2.3.0/incidence2/man/palettes.Rd                            |    2 
 incidence2-2.3.0/incidence2/man/plot.incidence2.Rd                     |   37 
 incidence2-2.3.0/incidence2/man/reexports.Rd                           |only
 incidence2-2.3.0/incidence2/man/regroup.Rd                             |   16 
 incidence2-2.3.0/incidence2/man/regroup_.Rd                            |only
 incidence2-2.3.0/incidence2/man/split.incidence2.Rd                    |only
 incidence2-2.3.0/incidence2/man/summarise.incidence2.Rd                |only
 incidence2-2.3.0/incidence2/man/summary.incidence2.Rd                  |    5 
 incidence2-2.3.0/incidence2/tests/testthat/test-bootstrap.R            |only
 incidence2-2.3.0/incidence2/tests/testthat/test-complete_dates.R       |   19 
 incidence2-2.3.0/incidence2/tests/testthat/test-incidence.R            |   27 
 incidence2-2.3.0/incidence2/tests/testthat/test-incidence_.R           |only
 incidence2-2.3.0/incidence2/tests/testthat/test-mutate.R               |only
 incidence2-2.3.0/incidence2/tests/testthat/test-nest.R                 |only
 incidence2-2.3.0/incidence2/tests/testthat/test-regroup_.R             |only
 incidence2-2.3.0/incidence2/tests/testthat/test-split.R                |only
 incidence2-2.3.0/incidence2/tests/testthat/test-subsetting_and_dplyr.R |   11 
 incidence2-2.3.0/incidence2/tests/testthat/test-summarise.R            |only
 incidence2-2.3.0/incidence2/vignettes/incidence2.Rmd                   |  602 +-
 71 files changed, 2974 insertions(+), 1922 deletions(-)

More information about incidence2 at CRAN
Permanent link

Package HYPEtools updated to version 1.6.2 with previous version 1.6.1 dated 2024-01-12

Title: Tools for Processing and Analyzing Files from the Hydrological Catchment Model HYPE
Description: Work with model files (setup, input, output) from the hydrological catchment model HYPE: Streamlined file import and export, standard evaluation plot routines, diverse post-processing and aggregation routines for hydrological model analysis.
Author: Rene Capell [aut, cre] , Conrad Brendel [aut] , Jafet Andersson [ctb], David Gustafsson [ctb], Jude Musuuza [ctb], Jude Lubega [ctb]
Maintainer: Rene Capell <hypetools.rene@smhi.se>

Diff between HYPEtools versions 1.6.1 dated 2024-01-12 and 1.6.2 dated 2024-05-23

 DESCRIPTION                             |    8 -
 MD5                                     |  136 +++++++++++++-------------
 NAMESPACE                               |    4 
 NEWS.md                                 |   16 ++-
 R/class_HypeGeoData.R                   |    2 
 R/class_HypeMultiVar.R                  |    2 
 R/class_HypeSingleVar.R                 |    2 
 R/class_HypeXobs.R                      |    2 
 R/function_AllUpstreamSubids.R          |    2 
 R/function_CompareFiles.R               |   10 +
 R/function_CreateOptpar.R               |    4 
 R/function_GwRetention.R                |    6 -
 R/function_InfoManipulation.R           |    2 
 R/function_OutletNearObs.R              |    8 -
 R/function_PlotAnnualRegime.R           |    2 
 R/function_PlotBasinOutput.R            |    2 
 R/function_PlotBasinSummary.R           |    2 
 R/function_PlotMapPoints.R              |    2 
 R/function_ReadWsOutput.R               |    2 
 R/function_ScaleAquiferData.R           |only
 R/function_ScaleFloodData.R             |only
 R/function_ScalePar.R                   |  165 ++++++++++++++++++++++++++------
 R/function_SimToPar.R                   |    4 
 R/function_VariableLookup.R             |    4 
 R/functioncollection_HypeSubidChecks.R  |    6 -
 R/functioncollection_export.R           |   41 +++++--
 R/functioncollection_import.R           |   69 ++++++++-----
 R/sysdata.rda                           |binary
 build/vignette.rds                      |binary
 inst/demo_model/AquiferData_Example.txt |only
 inst/demo_model/FloodData_Example.txt   |only
 inst/doc/analyze_hype_ts.html           |    2 
 inst/doc/basin_characteristics.html     |    2 
 inst/doc/basin_network.html             |    4 
 inst/doc/import_files.Rmd               |    2 
 inst/doc/import_files.html              |   20 ++-
 inst/doc/modify_par.html                |    2 
 inst/doc/plot_map_statistics.html       |    6 -
 man/AllUpstreamSubids.Rd                |    2 
 man/CompareFiles.Rd                     |    6 -
 man/CreateOptpar.Rd                     |    4 
 man/GwRetention.Rd                      |    4 
 man/HypeDataExport.Rd                   |   23 ++--
 man/HypeDataImport.Rd                   |   35 ++++--
 man/HypeGeoData.Rd                      |    2 
 man/HypeMultiVar.Rd                     |    2 
 man/HypeSingleVar.Rd                    |    2 
 man/HypeSubidChecks.Rd                  |    6 -
 man/HypeXobs.Rd                         |    2 
 man/InfoManipulation.Rd                 |   78 +++++++--------
 man/OutletNearObs.Rd                    |    8 -
 man/PlotAnnualRegime.Rd                 |    2 
 man/PlotBasinOutput.Rd                  |    2 
 man/PlotBasinSummary.Rd                 |    2 
 man/PlotMapPoints.Rd                    |    2 
 man/ReadClassData.Rd                    |   86 ++++++++--------
 man/ReadGeoClass.Rd                     |    2 
 man/ReadInfo.Rd                         |    2 
 man/ReadMapOutput.Rd                    |    4 
 man/ReadObs.Rd                          |    2 
 man/ReadOptpar.Rd                       |    2 
 man/ReadPmsf.Rd                         |    2 
 man/ReadSimass.Rd                       |    4 
 man/ReadTimeOutput.Rd                   |    8 -
 man/ReadWsOutput.Rd                     |    2 
 man/ReadXobs.Rd                         |    2 
 man/ScaleAquiferData.Rd                 |only
 man/ScaleFloodData.Rd                   |only
 man/ScalePar.Rd                         |   48 ++++++---
 man/VariableLookup.Rd                   |    2 
 man/WriteObs.Rd                         |    2 
 vignettes/import_files.Rmd              |    2 
 72 files changed, 554 insertions(+), 339 deletions(-)

More information about HYPEtools at CRAN
Permanent link

Package growR updated to version 1.3.0 with previous version 1.2.0 dated 2023-12-14

Title: Implementation of the Vegetation Model ModVege
Description: Run grass growth simulations using a grass growth model based on ModVege (Jouven, M., P. Carrère, and R. Baumont "Model Predicting Dynamics of Biomass, Structure and Digestibility of Herbage in Managed Permanent Pastures. 1. Model Description." (2006) <doi:10.1111/j.1365-2494.2006.00515.x>). The implementation in this package contains a few additions to the above cited version of ModVege, such as simulations of management decisions, and influences of snow cover. As such, the model is fit to simulate grass growth in mountainous regions, such as the Swiss Alps. The package also contains routines for calibrating the model and helpful tools for analysing model outputs and performance.
Author: Kevin Kramer [aut, cre, cph]
Maintainer: Kevin Kramer <kevin.pasqual.kramer@protonmail.ch>

Diff between growR versions 1.2.0 dated 2023-12-14 and 1.3.0 dated 2024-05-23

 DESCRIPTION                                                       |    8 
 MD5                                                               |   47 
 NAMESPACE                                                         |    3 
 NEWS.md                                                           |   34 
 R/modvegesite.R                                                   |  200 +-
 R/parameters.R                                                    |    5 
 R/run.R                                                           |   21 
 R/support_functions.R                                             |  123 +
 README.md                                                         |  157 +-
 build/partial.rdb                                                 |binary
 inst/doc/calibration.html                                         |   30 
 inst/doc/growR.R                                                  |    2 
 inst/doc/growR.Rmd                                                |   21 
 inst/doc/growR.html                                               |  205 +-
 inst/doc/parameter_descriptions.html                              |    8 
 man/ModvegeParameters.Rd                                          |    7 
 man/ModvegeSite.Rd                                                |   76 -
 man/autocut.Rd                                                    |    2 
 man/growR_run_loop.Rd                                             |    8 
 man/start_of_growing_season.Rd                                    |only
 man/start_of_growing_season_mtd.Rd                                |only
 man/weighted_temperature_sum.Rd                                   |only
 tests/testthat/_snaps/modvegesite/modvege_reference_output.dat    |  735 +++++-----
 tests/testthat/_snaps/parameters/parameterdata_default_values.dat |    6 
 vignettes/children/parameters.Rmd                                 |   10 
 vignettes/growR.Rmd                                               |   21 
 26 files changed, 1064 insertions(+), 665 deletions(-)

More information about growR at CRAN
Permanent link

Package geodist updated to version 0.1.0 with previous version 0.0.8 dated 2022-10-19

Title: Fast, Dependency-Free Geodesic Distance Calculations
Description: Dependency-free, ultra fast calculation of geodesic distances. Includes the reference nanometre-accuracy geodesic distances of Karney (2013) <doi:10.1007/s00190-012-0578-z>, as used by the 'sf' package, as well as Haversine and Vincenty distances. Default distance measure is the "Mapbox cheap ruler" which is generally more accurate than Haversine or Vincenty for distances out to a few hundred kilometres, and is considerably faster. The main function accepts one or two inputs in almost any generic rectangular form, and returns either matrices of pairwise distances, or vectors of sequential distances.
Author: Mark Padgham [aut, cre], Michael D. Sumner [aut], Charles F.F Karney [cph]
Maintainer: Mark Padgham <mark.padgham@email.com>

Diff between geodist versions 0.0.8 dated 2022-10-19 and 0.1.0 dated 2024-05-23

 geodist-0.0.8/geodist/inst/CITATION                      |only
 geodist-0.1.0/geodist/DESCRIPTION                        |   11 
 geodist-0.1.0/geodist/MD5                                |   55 +-
 geodist-0.1.0/geodist/NAMESPACE                          |    1 
 geodist-0.1.0/geodist/NEWS.md                            |    6 
 geodist-0.1.0/geodist/R/geodist-min.R                    |only
 geodist-0.1.0/geodist/R/geodist-package.r                |    2 
 geodist-0.1.0/geodist/R/geodist-vec.R                    |   60 +-
 geodist-0.1.0/geodist/R/geodist.R                        |   61 +-
 geodist-0.1.0/geodist/R/georange.R                       |   34 -
 geodist-0.1.0/geodist/R/utils.R                          |   88 ++-
 geodist-0.1.0/geodist/build/partial.rdb                  |only
 geodist-0.1.0/geodist/build/vignette.rds                 |binary
 geodist-0.1.0/geodist/inst/WORDLIST                      |   16 
 geodist-0.1.0/geodist/inst/doc/geodist.R                 |  125 +++--
 geodist-0.1.0/geodist/inst/doc/geodist.Rmd               |  127 +++--
 geodist-0.1.0/geodist/inst/doc/geodist.html              |   78 +--
 geodist-0.1.0/geodist/man/geodist.Rd                     |   28 +
 geodist-0.1.0/geodist/man/geodist_min.Rd                 |only
 geodist-0.1.0/geodist/man/geodist_vec.Rd                 |    4 
 geodist-0.1.0/geodist/man/georange.Rd                    |    2 
 geodist-0.1.0/geodist/src/dists_xy_min.c                 |only
 geodist-0.1.0/geodist/src/dists_xy_min.h                 |only
 geodist-0.1.0/geodist/src/geodist_init.c                 |    8 
 geodist-0.1.0/geodist/src/kdtree.c                       |only
 geodist-0.1.0/geodist/src/kdtree.h                       |only
 geodist-0.1.0/geodist/tests/testthat.R                   |    6 
 geodist-0.1.0/geodist/tests/testthat/test-geodist-min.R  |only
 geodist-0.1.0/geodist/tests/testthat/test-geodist.R      |  356 ++++++++-------
 geodist-0.1.0/geodist/tests/testthat/test-georange.R     |  278 ++++++-----
 geodist-0.1.0/geodist/tests/testthat/test-input-format.R |  167 ++++---
 geodist-0.1.0/geodist/tests/testthat/test-measures.R     |   73 +--
 geodist-0.1.0/geodist/vignettes/geodist.Rmd              |  127 +++--
 33 files changed, 1003 insertions(+), 710 deletions(-)

More information about geodist at CRAN
Permanent link

Package bibliometrix updated to version 4.2.2 with previous version 4.2.1 dated 2024-04-30

Title: Comprehensive Science Mapping Analysis
Description: Tool for quantitative research in scientometrics and bibliometrics. It implements the comprehensive workflow for science mapping analysis proposed in Aria M. and Cuccurullo C. (2017) <doi:10.1016/j.joi.2017.08.007>. 'bibliometrix' provides various routines for importing bibliographic data from 'SCOPUS', 'Clarivate Analytics Web of Science' (<https://www.webofknowledge.com/>), 'Digital Science Dimensions' (<https://www.dimensions.ai/>), 'OpenAlex' (<https://openalex.org/>), 'Cochrane Library' (<https://www.cochranelibrary.com/>), 'Lens' (<https://lens.org>), and 'PubMed' (<https://pubmed.ncbi.nlm.nih.gov/>) databases, performing bibliometric analysis and building networks for co-citation, coupling, scientific collaboration and co-word analysis.
Author: Massimo Aria [cre, aut, cph] , Corrado Cuccurullo [aut]
Maintainer: Massimo Aria <aria@unina.it>

Diff between bibliometrix versions 4.2.1 dated 2024-04-30 and 4.2.2 dated 2024-05-23

 DESCRIPTION               |   10 ++++--
 MD5                       |   22 +++++++--------
 R/metaTagExtraction.R     |    3 ++
 R/sysdata.rda             |binary
 build/partial.rdb         |binary
 data/bibtag.rda           |binary
 data/countries.rda        |binary
 data/customTheme.rda      |binary
 data/logo.rda             |binary
 data/stopwords.rda        |binary
 inst/biblioshiny/server.R |   66 ++++++++++++++++++++--------------------------
 inst/biblioshiny/utils.R  |    4 +-
 12 files changed, 52 insertions(+), 53 deletions(-)

More information about bibliometrix at CRAN
Permanent link

Package bayesMeanScale updated to version 0.1.3 with previous version 0.1.2 dated 2024-05-18

Title: Bayesian Post-Estimation on the Mean Scale
Description: Computes Bayesian posterior distributions of predictions, marginal effects, and differences of marginal effects for various generalized linear models. Importantly, the posteriors are on the mean (response) scale, allowing for more natural interpretation than summaries on the link scale. Also, predictions and marginal effects of the count probabilities for Poisson and negative binomial models can be computed.
Author: David M. Dalenberg [aut, cre]
Maintainer: David M. Dalenberg <dalenbe2@gmail.com>

Diff between bayesMeanScale versions 0.1.2 dated 2024-05-18 and 0.1.3 dated 2024-05-23

 DESCRIPTION                                         |    8 
 MD5                                                 |   40 ++--
 NEWS.md                                             |    7 
 inst/doc/introduction.R                             |   16 +
 inst/doc/introduction.Rmd                           |   16 +
 inst/doc/introduction.html                          |  178 +++++++++-----------
 tests/testthat/test-bayes-count-marg-effects.R      |   10 -
 tests/testthat/test-bayes-count-preds.R             |   40 +---
 tests/testthat/test-bayes-preds.R                   |   11 -
 tests/testthat/test-count-marg-effect-error-check.R |    1 
 tests/testthat/test-count-preds-error-check.R       |    1 
 tests/testthat/test-data-check.R                    |    2 
 tests/testthat/test-levels-prep.R                   |    2 
 tests/testthat/test-marg-compare-error-check.R      |    1 
 tests/testthat/test-marg-compare.R                  |    1 
 tests/testthat/test-marg-effects-error-check.R      |    1 
 tests/testthat/test-marg-effects.R                  |   20 --
 tests/testthat/test-modify-formula.R                |    2 
 tests/testthat/test-new-value.R                     |    1 
 tests/testthat/test-preds-error-check.R             |    1 
 vignettes/introduction.Rmd                          |   16 +
 21 files changed, 172 insertions(+), 203 deletions(-)

More information about bayesMeanScale at CRAN
Permanent link

Package TreeSearch updated to version 1.5.1 with previous version 1.5.0 dated 2024-04-03

Title: Phylogenetic Analysis with Discrete Character Data
Description: Reconstruct phylogenetic trees from discrete data. Inapplicable character states are handled using the algorithm of Brazeau, Guillerme and Smith (2019) <doi:10.1093/sysbio/syy083> with the "Morphy" library, under equal or implied step weights. Contains a "shiny" user interface for interactive tree search and exploration of results, including character visualization, rogue taxon detection, tree space mapping, and cluster consensus trees (Smith 2022a, b) <doi:10.1093/sysbio/syab099>, <doi:10.1093/sysbio/syab100>. Profile Parsimony (Faith and Trueman, 2001) <doi:10.1080/10635150118627>, Successive Approximations (Farris, 1969) <doi:10.2307/2412182> and custom optimality criteria are implemented.
Author: Martin R. Smith [aut, cre, cph] , Martin Brazeau [cph]
Maintainer: Martin R. Smith <martin.smith@durham.ac.uk>

Diff between TreeSearch versions 1.5.0 dated 2024-04-03 and 1.5.1 dated 2024-05-23

 DESCRIPTION                              |    6 -
 MD5                                      |   36 ++++----
 NEWS.md                                  |    7 +
 R/SPR.R                                  |   99 +++++++++++++++-------
 R/TBR.R                                  |  135 ++++++++++++++++++++++---------
 R/length_range.R                         |    2 
 build/partial.rdb                        |binary
 inst/REFERENCES.bib                      |    2 
 inst/WORDLIST                            |    1 
 inst/doc/custom.html                     |   33 +++----
 inst/doc/getting-started.html            |    6 -
 inst/doc/profile-scores.html             |    7 -
 inst/doc/profile.html                    |    9 +-
 inst/doc/tree-search.html                |   23 ++---
 inst/doc/tree-space.html                 |   13 +-
 man/MinimumLength.Rd                     |    2 
 man/TBR.Rd                               |    4 
 tests/testthat/test-length_range.R       |    2 
 tests/testthat/test-zzz-tree-rearrange.R |    2 
 19 files changed, 248 insertions(+), 141 deletions(-)

More information about TreeSearch at CRAN
Permanent link

Package zcurve updated to version 2.4.1 with previous version 2.4.0 dated 2023-10-27

Title: An Implementation of Z-Curves
Description: An implementation of z-curves - a method for estimating expected discovery and replicability rates on the bases of test-statistics of published studies. The package provides functions for fitting the new density and EM version (Bartoš & Schimmack, 2020, <doi:10.31234/osf.io/urgtn>), censored observations, as well as the original density z-curve (Brunner & Schimmack, 2020, <doi:10.15626/MP.2018.874>). Furthermore, the package provides summarizing and plotting functions for the fitted z-curve objects. See the aforementioned articles for more information about the z-curves, expected discovery and replicability rates, validation studies, and limitations.
Author: Frantisek Bartos [aut, cre], Ulrich Schimmack [aut]
Maintainer: Frantisek Bartos <f.bartos96@gmail.com>

Diff between zcurve versions 2.4.0 dated 2023-10-27 and 2.4.1 dated 2024-05-23

 DESCRIPTION                  |    7 +++--
 MD5                          |   16 ++++++-------
 R/data-preparation.R         |   51 ++++++++++++++++++++++++++++++++-----------
 R/main.R                     |   31 ++++++++++++++++++++------
 R/zcurve_clustered.R         |   12 +++++++++-
 build/partial.rdb            |binary
 man/zcurve-package.Rd        |    1 
 man/zcurve_data.Rd           |   12 +++++-----
 tests/testthat/test-zcurve.R |    8 +++---
 9 files changed, 96 insertions(+), 42 deletions(-)

More information about zcurve at CRAN
Permanent link

Package rgbif updated to version 3.8.0 with previous version 3.7.9 dated 2024-01-11

Title: Interface to the Global Biodiversity Information Facility API
Description: A programmatic interface to the Web Service methods provided by the Global Biodiversity Information Facility (GBIF; <https://www.gbif.org/developer/summary>). GBIF is a database of species occurrence records from sources all over the globe. rgbif includes functions for searching for taxonomic names, retrieving information on data providers, getting species occurrence records, getting counts of occurrence records, and using the GBIF tile map service to make rasters summarizing huge amounts of data.
Author: Scott Chamberlain [aut] , Damiano Oldoni [aut] , Vijay Barve [ctb] , Peter Desmet [ctb] , Laurens Geffert [ctb], Dan Mcglinn [ctb] , Karthik Ram [ctb] , rOpenSci [fnd] , John Waller [aut, cre]
Maintainer: John Waller <jwaller@gbif.org>

Diff between rgbif versions 3.7.9 dated 2024-01-11 and 3.8.0 dated 2024-05-23

 rgbif-3.7.9/rgbif/tests/fixtures/datasets_checklist.yml                       |only
 rgbif-3.7.9/rgbif/tests/fixtures/datasets_contact.yml                         |only
 rgbif-3.7.9/rgbif/tests/fixtures/datasets_metadata.yml                        |only
 rgbif-3.7.9/rgbif/tests/fixtures/datasets_single.yml                          |only
 rgbif-3.7.9/rgbif/tests/fixtures/gbif_citation_datasetkey.yml                 |only
 rgbif-3.7.9/rgbif/tests/fixtures/occ_download_cancel.yml                      |only
 rgbif-3.7.9/rgbif/tests/fixtures/occ_get.yml                                  |only
 rgbif-3.7.9/rgbif/tests/fixtures/occ_get_other.yml                            |only
 rgbif-3.7.9/rgbif/tests/fixtures/occ_metadata.yml                             |only
 rgbif-3.7.9/rgbif/tests/fixtures/occ_search_catalognumber.yml                 |only
 rgbif-3.7.9/rgbif/tests/fixtures/occ_search_coordinateUncertaintyInMeters.yml |only
 rgbif-3.7.9/rgbif/tests/fixtures/occ_search_degreeOfEstablishment.yml         |only
 rgbif-3.7.9/rgbif/tests/fixtures/occ_search_depth.yml                         |only
 rgbif-3.7.9/rgbif/tests/fixtures/occ_search_distanceFromCentroidInMeters.yml  |only
 rgbif-3.7.9/rgbif/tests/fixtures/occ_search_elevation.yml                     |only
 rgbif-3.7.9/rgbif/tests/fixtures/occ_search_eventId.yml                       |only
 rgbif-3.7.9/rgbif/tests/fixtures/occ_search_fails_well.yml                    |only
 rgbif-3.7.9/rgbif/tests/fixtures/occ_search_gadmGid.yml                       |only
 rgbif-3.7.9/rgbif/tests/fixtures/occ_search_hierarchy_data.yml                |only
 rgbif-3.7.9/rgbif/tests/fixtures/occ_search_identifiedBy.yml                  |only
 rgbif-3.7.9/rgbif/tests/fixtures/occ_search_isInCluster.yml                   |only
 rgbif-3.7.9/rgbif/tests/fixtures/occ_search_iucnRedListCategory.yml           |only
 rgbif-3.7.9/rgbif/tests/fixtures/occ_search_key_gbifid_character_class.yml    |only
 rgbif-3.7.9/rgbif/tests/fixtures/occ_search_lifeStage.yml                     |only
 rgbif-3.7.9/rgbif/tests/fixtures/occ_search_many_inputs.yml                   |only
 rgbif-3.7.9/rgbif/tests/fixtures/occ_search_networkKey.yml                    |only
 rgbif-3.7.9/rgbif/tests/fixtures/occ_search_occurrenceId.yml                  |only
 rgbif-3.7.9/rgbif/tests/fixtures/occ_search_occurrencestatus.yml              |only
 rgbif-3.7.9/rgbif/tests/fixtures/occ_search_organismQuantity.yml              |only
 rgbif-3.7.9/rgbif/tests/fixtures/occ_search_organismQuantityType.yml          |only
 rgbif-3.7.9/rgbif/tests/fixtures/occ_search_relativeOrganismQuantity.yml      |only
 rgbif-3.7.9/rgbif/tests/fixtures/occ_search_scientificname.yml                |only
 rgbif-3.7.9/rgbif/tests/fixtures/occ_search_speciesKey.yml                    |only
 rgbif-3.7.9/rgbif/tests/fixtures/occ_search_verbatimScientificName.yml        |only
 rgbif-3.7.9/rgbif/tests/fixtures/organizations_search_country.yml             |only
 rgbif-3.7.9/rgbif/tests/fixtures/organizations_search_uuid.yml                |only
 rgbif-3.7.9/rgbif/tests/fixtures/wkt_large_occ_data.yml                       |only
 rgbif-3.7.9/rgbif/tests/fixtures/wkt_large_occ_search.yml                     |only
 rgbif-3.7.9/rgbif/tests/testthat/test-datasets.r                              |only
 rgbif-3.8.0/rgbif/DESCRIPTION                                                 |    6 
 rgbif-3.8.0/rgbif/MD5                                                         |  307 
 rgbif-3.8.0/rgbif/NAMESPACE                                                   |    2 
 rgbif-3.8.0/rgbif/NEWS.md                                                     |   27 
 rgbif-3.8.0/rgbif/R/download_predicate_dsl.R                                  |   11 
 rgbif-3.8.0/rgbif/R/gbif_citation.R                                           |   64 
 rgbif-3.8.0/rgbif/R/geometry_utils.R                                          |    4 
 rgbif-3.8.0/rgbif/R/name_lookup.r                                             |  424 
 rgbif-3.8.0/rgbif/R/occ_count.r                                               |   76 
 rgbif-3.8.0/rgbif/R/occ_data.R                                                |  271 
 rgbif-3.8.0/rgbif/R/occ_download.R                                            |    1 
 rgbif-3.8.0/rgbif/R/occ_download_describe.R                                   |only
 rgbif-3.8.0/rgbif/R/occ_search.r                                              |  244 
 rgbif-3.8.0/rgbif/R/wkt_parse.R                                               |  105 
 rgbif-3.8.0/rgbif/R/zzz.r                                                     |    2 
 rgbif-3.8.0/rgbif/man/download_predicate_dsl.Rd                               |    1 
 rgbif-3.8.0/rgbif/man/gbif_citation.Rd                                        |   25 
 rgbif-3.8.0/rgbif/man/name_lookup.Rd                                          |    3 
 rgbif-3.8.0/rgbif/man/occ_data.Rd                                             |  551 
 rgbif-3.8.0/rgbif/man/occ_download.Rd                                         |    1 
 rgbif-3.8.0/rgbif/man/occ_download_describe.Rd                                |only
 rgbif-3.8.0/rgbif/man/occ_search.Rd                                           |  238 
 rgbif-3.8.0/rgbif/man/wkt_parse.Rd                                            |   11 
 rgbif-3.8.0/rgbif/tests/fixtures/dataset.yml                                  | 1260 
 rgbif-3.8.0/rgbif/tests/fixtures/dataset_doi.yml                              |    9 
 rgbif-3.8.0/rgbif/tests/fixtures/dataset_list_funs.yml                        |only
 rgbif-3.8.0/rgbif/tests/fixtures/dataset_search.yml                           | 7396 ++---
 rgbif-3.8.0/rgbif/tests/fixtures/dataset_search_facet.yml                     |   47 
 rgbif-3.8.0/rgbif/tests/fixtures/dataset_suggest.yml                          | 5287 +---
 rgbif-3.8.0/rgbif/tests/fixtures/dataset_suggest_description.yml              | 3090 +-
 rgbif-3.8.0/rgbif/tests/fixtures/dataset_uuid_funs.yml                        | 2034 -
 rgbif-3.8.0/rgbif/tests/fixtures/derived_dataset_1.yml                        |    8 
 rgbif-3.8.0/rgbif/tests/fixtures/derived_dataset_2.yml                        |    6 
 rgbif-3.8.0/rgbif/tests/fixtures/enumeration.yml                              |   54 
 rgbif-3.8.0/rgbif/tests/fixtures/enumeration_fails_well.yml                   |    2 
 rgbif-3.8.0/rgbif/tests/fixtures/gbif_citation_downloadkey.yml                |    2 
 rgbif-3.8.0/rgbif/tests/fixtures/gbif_citation_occ_download_meta.yml          |    2 
 rgbif-3.8.0/rgbif/tests/fixtures/gbif_oai_get_records.yml                     |    4 
 rgbif-3.8.0/rgbif/tests/fixtures/gbif_oai_identify.yml                        |    4 
 rgbif-3.8.0/rgbif/tests/fixtures/gbif_oai_list_identifiers.yml                |    4 
 rgbif-3.8.0/rgbif/tests/fixtures/gbif_oai_list_metadataformats.yml            |    4 
 rgbif-3.8.0/rgbif/tests/fixtures/gbif_oai_list_sets.yml                       | 2465 -
 rgbif-3.8.0/rgbif/tests/fixtures/installations.yml                            | 3807 +-
 rgbif-3.8.0/rgbif/tests/fixtures/installations_deleted.yml                    |    4 
 rgbif-3.8.0/rgbif/tests/fixtures/installations_uuid.yml                       |    2 
 rgbif-3.8.0/rgbif/tests/fixtures/installations_uuid_data.yml                  |    2 
 rgbif-3.8.0/rgbif/tests/fixtures/map_fetch_png.yml                            | 1744 -
 rgbif-3.8.0/rgbif/tests/fixtures/map_fetch_terra.yml                          | 6717 ++---
 rgbif-3.8.0/rgbif/tests/fixtures/name_backbone.yml                            |    4 
 rgbif-3.8.0/rgbif/tests/fixtures/name_backbone_verbose_true.yml               |    4 
 rgbif-3.8.0/rgbif/tests/fixtures/name_issues.yml                              |   12 
 rgbif-3.8.0/rgbif/tests/fixtures/name_lookup_constituentKey.yml               |only
 rgbif-3.8.0/rgbif/tests/fixtures/name_lookup_habitat.yml                      |  470 
 rgbif-3.8.0/rgbif/tests/fixtures/name_lookup_no_results.yml                   |    2 
 rgbif-3.8.0/rgbif/tests/fixtures/name_parse.yml                               |   26 
 rgbif-3.8.0/rgbif/tests/fixtures/name_suggest.yml                             | 2651 +-
 rgbif-3.8.0/rgbif/tests/fixtures/name_suggest_many_args.yml                   |   12 
 rgbif-3.8.0/rgbif/tests/fixtures/name_usage.yml                               |  241 
 rgbif-3.8.0/rgbif/tests/fixtures/name_usage_data_children.yml                 |    4 
 rgbif-3.8.0/rgbif/tests/fixtures/name_usage_data_descriptions.yml             |   46 
 rgbif-3.8.0/rgbif/tests/fixtures/name_usage_data_distributions.yml            | 1206 
 rgbif-3.8.0/rgbif/tests/fixtures/name_usage_data_iucnRedListCategory.yml      |    4 
 rgbif-3.8.0/rgbif/tests/fixtures/name_usage_data_media.yml                    |   52 
 rgbif-3.8.0/rgbif/tests/fixtures/name_usage_data_name.yml                     |   12 
 rgbif-3.8.0/rgbif/tests/fixtures/name_usage_data_parents.yml                  |    4 
 rgbif-3.8.0/rgbif/tests/fixtures/name_usage_data_references.yml               |  478 
 rgbif-3.8.0/rgbif/tests/fixtures/name_usage_data_related.yml                  | 2402 -
 rgbif-3.8.0/rgbif/tests/fixtures/name_usage_data_speciesProfiles.yml          |   15 
 rgbif-3.8.0/rgbif/tests/fixtures/name_usage_data_synonyms.yml                 |    4 
 rgbif-3.8.0/rgbif/tests/fixtures/name_usage_data_typeSpecimens.yml            |    4 
 rgbif-3.8.0/rgbif/tests/fixtures/name_usage_data_vernacularNames.yml          |  486 
 rgbif-3.8.0/rgbif/tests/fixtures/name_usage_fails_well.yml                    |    4 
 rgbif-3.8.0/rgbif/tests/fixtures/network.yml                                  |   56 
 rgbif-3.8.0/rgbif/tests/fixtures/network_constituents.yml                     |13000 ++++------
 rgbif-3.8.0/rgbif/tests/fixtures/nodes.yml                                    | 6166 ++--
 rgbif-3.8.0/rgbif/tests/fixtures/occ_count.yml                                |   28 
 rgbif-3.8.0/rgbif/tests/fixtures/occ_count_.yml                               |   30 
 rgbif-3.8.0/rgbif/tests/fixtures/occ_count_facet.yml                          |   72 
 rgbif-3.8.0/rgbif/tests/fixtures/occ_count_legacy_params.yml                  |   20 
 rgbif-3.8.0/rgbif/tests/fixtures/occ_data_args_with_many_inputs.yml           | 3072 +-
 rgbif-3.8.0/rgbif/tests/fixtures/occ_data_catalog_number.yml                  |  470 
 rgbif-3.8.0/rgbif/tests/fixtures/occ_data_coordinateUncertaintyInMeters.yml   |  583 
 rgbif-3.8.0/rgbif/tests/fixtures/occ_data_degreeOfEstablishment.yml           |  801 
 rgbif-3.8.0/rgbif/tests/fixtures/occ_data_depth.yml                           |   78 
 rgbif-3.8.0/rgbif/tests/fixtures/occ_data_distanceFromCentroidInMeters.yml    |  668 
 rgbif-3.8.0/rgbif/tests/fixtures/occ_data_dropped_fields.yml                  |  253 
 rgbif-3.8.0/rgbif/tests/fixtures/occ_data_elevation.yml                       |  155 
 rgbif-3.8.0/rgbif/tests/fixtures/occ_data_eventId.yml                         | 1035 
 rgbif-3.8.0/rgbif/tests/fixtures/occ_data_fails_well.yml                      |    4 
 rgbif-3.8.0/rgbif/tests/fixtures/occ_data_gadmGid.yml                         |  679 
 rgbif-3.8.0/rgbif/tests/fixtures/occ_data_identifiedBy.yml                    | 1448 -
 rgbif-3.8.0/rgbif/tests/fixtures/occ_data_isInCluster.yml                     |  539 
 rgbif-3.8.0/rgbif/tests/fixtures/occ_data_iucnRedListCategory.yml             | 1067 
 rgbif-3.8.0/rgbif/tests/fixtures/occ_data_key_gbifid_character_class.yml      |  504 
 rgbif-3.8.0/rgbif/tests/fixtures/occ_data_lifeStage.yml                       | 1045 
 rgbif-3.8.0/rgbif/tests/fixtures/occ_data_networkKey.yml                      |  957 
 rgbif-3.8.0/rgbif/tests/fixtures/occ_data_occurrenceId.yml                    |  788 
 rgbif-3.8.0/rgbif/tests/fixtures/occ_data_occurrencestatus.yml                |  573 
 rgbif-3.8.0/rgbif/tests/fixtures/occ_data_organismQuantity.yml                |  476 
 rgbif-3.8.0/rgbif/tests/fixtures/occ_data_organismQuantityType.yml            |  317 
 rgbif-3.8.0/rgbif/tests/fixtures/occ_data_relativeOrganismQuantity.yml        |  589 
 rgbif-3.8.0/rgbif/tests/fixtures/occ_data_scientificname.yml                  | 1987 -
 rgbif-3.8.0/rgbif/tests/fixtures/occ_data_speciesKey.yml                      | 1413 -
 rgbif-3.8.0/rgbif/tests/fixtures/occ_data_verbatimScientificName.yml          | 1441 -
 rgbif-3.8.0/rgbif/tests/fixtures/occ_download_1.yml                           |   14 
 rgbif-3.8.0/rgbif/tests/fixtures/occ_download_2.yml                           |   18 
 rgbif-3.8.0/rgbif/tests/fixtures/occ_download_3.yml                           |   14 
 rgbif-3.8.0/rgbif/tests/fixtures/occ_download_4.yml                           |   14 
 rgbif-3.8.0/rgbif/tests/fixtures/occ_download_5.yml                           |   10 
 rgbif-3.8.0/rgbif/tests/fixtures/occ_download_6.yml                           |   10 
 rgbif-3.8.0/rgbif/tests/fixtures/occ_download_7.yml                           |   10 
 rgbif-3.8.0/rgbif/tests/fixtures/occ_download_8.yml                           |   10 
 rgbif-3.8.0/rgbif/tests/fixtures/occ_download_cancel_prep.yml                 |   10 
 rgbif-3.8.0/rgbif/tests/fixtures/occ_download_dataset_activity.yml            |   44 
 rgbif-3.8.0/rgbif/tests/fixtures/occ_download_dataset_activity_error.yml      |    2 
 rgbif-3.8.0/rgbif/tests/fixtures/occ_download_datasets.yml                    |    2 
 rgbif-3.8.0/rgbif/tests/fixtures/occ_download_datasets_error.yml              |   15 
 rgbif-3.8.0/rgbif/tests/fixtures/occ_download_describe.yml                    |only
 rgbif-3.8.0/rgbif/tests/fixtures/occ_download_list.yml                        |    4 
 rgbif-3.8.0/rgbif/tests/fixtures/occ_download_list_unauthorized.yml           |    2 
 rgbif-3.8.0/rgbif/tests/fixtures/occ_download_meta.yml                        |    2 
 rgbif-3.8.0/rgbif/tests/fixtures/occ_download_meta_na_results.yml             |    2 
 rgbif-3.8.0/rgbif/tests/fixtures/occ_download_meta_with_results.yml           |    2 
 rgbif-3.8.0/rgbif/tests/fixtures/occ_download_queue.yml                       |  207 
 rgbif-3.8.0/rgbif/tests/fixtures/occ_download_wait_character.yml              |    4 
 rgbif-3.8.0/rgbif/tests/fixtures/occ_download_wait_request.yml                | 1226 
 rgbif-3.8.0/rgbif/tests/testthat/test-dataset_uuid_funs.R                     |    1 
 rgbif-3.8.0/rgbif/tests/testthat/test-gbif_citation.R                         |   22 
 rgbif-3.8.0/rgbif/tests/testthat/test-name_lookup.r                           |   14 
 rgbif-3.8.0/rgbif/tests/testthat/test-name_suggest.r                          |    1 
 rgbif-3.8.0/rgbif/tests/testthat/test-occ_count.r                             |    1 
 rgbif-3.8.0/rgbif/tests/testthat/test-occ_data.R                              |   54 
 rgbif-3.8.0/rgbif/tests/testthat/test-occ_download.R                          |   19 
 rgbif-3.8.0/rgbif/tests/testthat/test-occ_download_describe.R                 |only
 rgbif-3.8.0/rgbif/tests/testthat/test-occ_download_prep.R                     |    3 
 rgbif-3.8.0/rgbif/tests/testthat/test-occ_get.r                               |    2 
 rgbif-3.8.0/rgbif/tests/testthat/test-occ_search.r                            |   51 
 rgbif-3.8.0/rgbif/tests/testthat/test-wkt_parse.R                             |   22 
 177 files changed, 43863 insertions(+), 42734 deletions(-)

More information about rgbif at CRAN
Permanent link

Package backports updated to version 1.5.0 with previous version 1.4.1 dated 2021-12-13

Title: Reimplementations of Functions Introduced Since R-3.0.0
Description: Functions introduced or changed since R v3.0.0 are re-implemented in this package. The backports are conditionally exported in order to let R resolve the function name to either the implemented backport, or the respective base version, if available. Package developers can make use of new functions or arguments by selectively importing specific backports to support older installations.
Author: Michel Lang [cre, aut] , Duncan Murdoch [aut], R Core Team [aut]
Maintainer: Michel Lang <michellang@gmail.com>

Diff between backports versions 1.4.1 dated 2021-12-13 and 1.5.0 dated 2024-05-23

 DESCRIPTION                      |   11 +++++++----
 MD5                              |   31 ++++++++++++++++++++++---------
 NAMESPACE                        |    7 +++++++
 NEWS.md                          |    5 +++++
 R/Rconcordance.R                 |only
 R/import.R                       |   12 +++++++-----
 R/lengths.R                      |    6 +++++-
 R/libPaths.R                     |only
 R/null_coalesce.R                |only
 R/zzz.R                          |    1 +
 README.md                        |    8 ++++++++
 man/as.Rconcordance.Rd           |only
 man/as.Rconcordance.default.Rd   |only
 man/as.character.Rconcordance.Rd |only
 man/backports-package.Rd         |    1 +
 man/libPaths.Rd                  |only
 man/matchConcordance.Rd          |only
 man/null_coalesce_operator.Rd    |only
 man/print.Rconcordance.Rd        |only
 tests/test_Rconcordance.R        |only
 tests/test_dotlibPaths.R         |only
 tests/test_dotsNames.R           |   22 ++++++++++++++++++++++
 tests/test_null_coalesce.R       |only
 23 files changed, 85 insertions(+), 19 deletions(-)

More information about backports at CRAN
Permanent link

Package rio updated to version 1.1.0 with previous version 1.0.1 dated 2023-09-19

Title: A Swiss-Army Knife for Data I/O
Description: Streamlined data import and export by making assumptions that the user is probably willing to make: 'import()' and 'export()' determine the data format from the file extension, reasonable defaults are used for data import and export, web-based import is natively supported (including from SSL/HTTPS), compressed files can be read directly, and fast import packages are used where appropriate. An additional convenience function, 'convert()', provides a simple method for converting between file types.
Author: Jason Becker [aut], Chung-hong Chan [aut, cre] , David Schoch [aut] , Geoffrey CH Chan [ctb], Thomas J. Leeper [aut] , Christopher Gandrud [ctb], Andrew MacDonald [ctb], Ista Zahn [ctb], Stanislaus Stadlmann [ctb], Ruaridh Williamson [ctb], Patrick K [...truncated...]
Maintainer: Chung-hong Chan <chainsawtiney@gmail.com>

Diff between rio versions 1.0.1 dated 2023-09-19 and 1.1.0 dated 2024-05-23

 rio-1.0.1/rio/R/convert_google_url.R                         |only
 rio-1.0.1/rio/R/fwf2.R                                       |only
 rio-1.0.1/rio/tests/testthat/test_format_csv_gz.R            |only
 rio-1.1.0/rio/DESCRIPTION                                    |   30 -
 rio-1.1.0/rio/MD5                                            |  157 ++++----
 rio-1.1.0/rio/NEWS.md                                        |   24 +
 rio-1.1.0/rio/R/compression.R                                |  121 ++++--
 rio-1.1.0/rio/R/export.R                                     |   15 
 rio-1.1.0/rio/R/export_list.R                                |    9 
 rio-1.1.0/rio/R/extensions.R                                 |    2 
 rio-1.1.0/rio/R/import.R                                     |   56 +-
 rio-1.1.0/rio/R/import_list.R                                |   81 +---
 rio-1.1.0/rio/R/import_methods.R                             |   84 ++--
 rio-1.1.0/rio/R/remote_to_local.R                            |  113 ++---
 rio-1.1.0/rio/R/rio.R                                        |   17 
 rio-1.1.0/rio/R/set_class.R                                  |    3 
 rio-1.1.0/rio/R/suggestions.R                                |    5 
 rio-1.1.0/rio/R/sysdata.rda                                  |binary
 rio-1.1.0/rio/R/utils.R                                      |   23 +
 rio-1.1.0/rio/README.md                                      |  105 ++---
 rio-1.1.0/rio/build/vignette.rds                             |binary
 rio-1.1.0/rio/inst/doc/labelled.html                         |    4 
 rio-1.1.0/rio/inst/doc/philosophy.html                       |    2 
 rio-1.1.0/rio/inst/doc/remap.html                            |    2 
 rio-1.1.0/rio/inst/doc/rio.R                                 |   18 
 rio-1.1.0/rio/inst/doc/rio.html                              |  158 +++++---
 rio-1.1.0/rio/man/export.Rd                                  |    3 
 rio-1.1.0/rio/man/import.Rd                                  |   34 +
 rio-1.1.0/rio/man/import_list.Rd                             |   22 -
 rio-1.1.0/rio/man/rio.Rd                                     |    4 
 rio-1.1.0/rio/tests/testdata/iris_no_extension_xls           |only
 rio-1.1.0/rio/tests/testthat/test_compress.R                 |  107 ++++-
 rio-1.1.0/rio/tests/testthat/test_convert.R                  |   42 +-
 rio-1.1.0/rio/tests/testthat/test_errors.R                   |   28 -
 rio-1.1.0/rio/tests/testthat/test_export_corner_cases.R      |   35 -
 rio-1.1.0/rio/tests/testthat/test_export_list.R              |  109 +++--
 rio-1.1.0/rio/tests/testthat/test_extensions.R               |   35 -
 rio-1.1.0/rio/tests/testthat/test_format_R.R                 |   22 -
 rio-1.1.0/rio/tests/testthat/test_format_arff.R              |   17 
 rio-1.1.0/rio/tests/testthat/test_format_csv.R               |  100 ++---
 rio-1.1.0/rio/tests/testthat/test_format_csvy.R              |   21 -
 rio-1.1.0/rio/tests/testthat/test_format_dbf.R               |   22 -
 rio-1.1.0/rio/tests/testthat/test_format_dif.R               |    4 
 rio-1.1.0/rio/tests/testthat/test_format_dta.R               |   53 +-
 rio-1.1.0/rio/tests/testthat/test_format_eviews.R            |    4 
 rio-1.1.0/rio/tests/testthat/test_format_external_packages.R |   20 -
 rio-1.1.0/rio/tests/testthat/test_format_feather.R           |   18 
 rio-1.1.0/rio/tests/testthat/test_format_fortran.R           |   11 
 rio-1.1.0/rio/tests/testthat/test_format_fst.R               |   18 
 rio-1.1.0/rio/tests/testthat/test_format_fwf.R               |   53 +-
 rio-1.1.0/rio/tests/testthat/test_format_html.R              |   43 +-
 rio-1.1.0/rio/tests/testthat/test_format_json.R              |   38 -
 rio-1.1.0/rio/tests/testthat/test_format_matlab.R            |   20 -
 rio-1.1.0/rio/tests/testthat/test_format_mtp.R               |    5 
 rio-1.1.0/rio/tests/testthat/test_format_ods.R               |   52 +-
 rio-1.1.0/rio/tests/testthat/test_format_parquet.R           |   13 
 rio-1.1.0/rio/tests/testthat/test_format_psv.R               |   25 -
 rio-1.1.0/rio/tests/testthat/test_format_pzfx.R              |   36 -
 rio-1.1.0/rio/tests/testthat/test_format_qs.R                |   18 
 rio-1.1.0/rio/tests/testthat/test_format_rdata.R             |   85 ++--
 rio-1.1.0/rio/tests/testthat/test_format_rds.R               |   27 -
 rio-1.1.0/rio/tests/testthat/test_format_rec.R               |    3 
 rio-1.1.0/rio/tests/testthat/test_format_sas.R               |   24 -
 rio-1.1.0/rio/tests/testthat/test_format_sav.R               |  127 +++---
 rio-1.1.0/rio/tests/testthat/test_format_syd.R               |    5 
 rio-1.1.0/rio/tests/testthat/test_format_tsv.R               |   24 -
 rio-1.1.0/rio/tests/testthat/test_format_xls.R               |   66 +--
 rio-1.1.0/rio/tests/testthat/test_format_xml.R               |   34 -
 rio-1.1.0/rio/tests/testthat/test_format_yml.R               |   35 -
 rio-1.1.0/rio/tests/testthat/test_gather_attrs.R             |    4 
 rio-1.1.0/rio/tests/testthat/test_guess.R                    |   10 
 rio-1.1.0/rio/tests/testthat/test_identical.R                |   79 ++--
 rio-1.1.0/rio/tests/testthat/test_import_list.R              |  212 ++++++-----
 rio-1.1.0/rio/tests/testthat/test_install_formats.R          |    2 
 rio-1.1.0/rio/tests/testthat/test_mapping.R                  |   47 +-
 rio-1.1.0/rio/tests/testthat/test_matrix.R                   |   23 -
 rio-1.1.0/rio/tests/testthat/test_remote.R                   |   21 -
 rio-1.1.0/rio/tests/testthat/test_set_class.R                |   43 +-
 rio-1.1.0/rio/tests/testthat/test_trust.R                    |only
 rio-1.1.0/rio/vignettes/philosophy.Rmd                       |    2 
 rio-1.1.0/rio/vignettes/remap.Rmd                            |    2 
 rio-1.1.0/rio/vignettes/rio.Rmd                              |   21 -
 82 files changed, 1623 insertions(+), 1334 deletions(-)

More information about rio at CRAN
Permanent link

Package funStatTest updated to version 1.0.3 with previous version 1.0.2 dated 2023-04-20

Title: Statistical Testing for Functional Data
Description: Implementation of two sample comparison procedures based on median-based statistical tests for functional data, introduced in Smida et al (2022) <doi:10.1080/10485252.2022.2064997>. Other competitive state-of-the-art approaches proposed by Chakraborty and Chaudhuri (2015) <doi:10.1093/biomet/asu072>, Horvath et al (2013) <doi:10.1111/j.1467-9868.2012.01032.x> or Cuevas et al (2004) <doi:10.1016/j.csda.2003.10.021> are also included in the package, as well as procedures to run test result comparisons and power analysis using simulations.
Author: Zaineb Smida [aut] , Ghislain Durif [aut, cre] , Lionel Cucala [aut]
Maintainer: Ghislain Durif <gd.dev@libertymail.net>

Diff between funStatTest versions 1.0.2 dated 2023-04-20 and 1.0.3 dated 2024-05-23

 funStatTest-1.0.2/funStatTest/R/authorship.R                                                    |only
 funStatTest-1.0.3/funStatTest/DESCRIPTION                                                       |   22 +--
 funStatTest-1.0.3/funStatTest/MD5                                                               |   67 +++++-----
 funStatTest-1.0.3/funStatTest/NAMESPACE                                                         |    2 
 funStatTest-1.0.3/funStatTest/R/funstattest_authors.R                                           |only
 funStatTest-1.0.3/funStatTest/R/import.R                                                        |    2 
 funStatTest-1.0.3/funStatTest/R/power.R                                                         |    4 
 funStatTest-1.0.3/funStatTest/R/pvalues.R                                                       |    6 
 funStatTest-1.0.3/funStatTest/R/simulation.R                                                    |    8 -
 funStatTest-1.0.3/funStatTest/R/statistics.R                                                    |   38 ++---
 funStatTest-1.0.3/funStatTest/R/utils.R                                                         |   10 -
 funStatTest-1.0.3/funStatTest/README.md                                                         |   25 +--
 funStatTest-1.0.3/funStatTest/build/partial.rdb                                                 |binary
 funStatTest-1.0.3/funStatTest/build/vignette.rds                                                |binary
 funStatTest-1.0.3/funStatTest/inst/doc/getting-started-with-functional-statistical-testing.R    |    6 
 funStatTest-1.0.3/funStatTest/inst/doc/getting-started-with-functional-statistical-testing.Rmd  |   38 ++++-
 funStatTest-1.0.3/funStatTest/inst/doc/getting-started-with-functional-statistical-testing.html |   16 +-
 funStatTest-1.0.3/funStatTest/man/comp_stat.Rd                                                  |    3 
 funStatTest-1.0.3/funStatTest/man/figures/README-data_simu-1.png                                |binary
 funStatTest-1.0.3/funStatTest/man/funStatTest_authors.Rd                                        |only
 funStatTest-1.0.3/funStatTest/man/permut_pval.Rd                                                |    3 
 funStatTest-1.0.3/funStatTest/man/plot_simu.Rd                                                  |    3 
 funStatTest-1.0.3/funStatTest/man/power_exp.Rd                                                  |    3 
 funStatTest-1.0.3/funStatTest/man/simul_data.Rd                                                 |    3 
 funStatTest-1.0.3/funStatTest/man/simul_traj.Rd                                                 |    3 
 funStatTest-1.0.3/funStatTest/man/stat_cff.Rd                                                   |    3 
 funStatTest-1.0.3/funStatTest/man/stat_hkr.Rd                                                   |    3 
 funStatTest-1.0.3/funStatTest/man/stat_med.Rd                                                   |    3 
 funStatTest-1.0.3/funStatTest/man/stat_mo.Rd                                                    |    3 
 funStatTest-1.0.3/funStatTest/man/stat_wmw.Rd                                                   |    3 
 funStatTest-1.0.3/funStatTest/tests/testthat/test-power.R                                       |    2 
 funStatTest-1.0.3/funStatTest/tests/testthat/test-pvalues.R                                     |    2 
 funStatTest-1.0.3/funStatTest/tests/testthat/test-simulation.R                                  |    2 
 funStatTest-1.0.3/funStatTest/tests/testthat/test-statistics.R                                  |    2 
 funStatTest-1.0.3/funStatTest/tests/testthat/test-utils.R                                       |    2 
 funStatTest-1.0.3/funStatTest/vignettes/getting-started-with-functional-statistical-testing.Rmd |   38 ++++-
 36 files changed, 200 insertions(+), 125 deletions(-)

More information about funStatTest at CRAN
Permanent link

Package TKCat updated to version 1.1.8 with previous version 1.1.7 dated 2024-05-08

Title: Tailored Knowledge Catalog
Description: Facilitate the management of data from knowledge resources that are frequently used alone or together in research environments. In 'TKCat', knowledge resources are manipulated as modeled database (MDB) objects. These objects provide access to the data tables along with a general description of the resource and a detail data model documenting the tables, their fields and their relationships. These MDBs are then gathered in catalogs that can be easily explored an shared. Finally, 'TKCat' provides tools to easily subset, filter and combine MDBs and create new catalogs suited for specific needs.
Author: Patrice Godard [aut, cre, cph]
Maintainer: Patrice Godard <patrice.godard@gmail.com>

Diff between TKCat versions 1.1.7 dated 2024-05-08 and 1.1.8 dated 2024-05-23

 DESCRIPTION                 |    6 +++---
 MD5                         |   10 +++++-----
 R/chMDB.R                   |    5 ++++-
 inst/doc/TKCat-KMR-POK.html |    4 ++--
 inst/doc/TKCat.html         |   36 ++++++++++++++++++------------------
 inst/pkgdown.yml            |    2 +-
 6 files changed, 33 insertions(+), 30 deletions(-)

More information about TKCat at CRAN
Permanent link

Package snotelr updated to version 1.4 with previous version 1.2 dated 2023-09-16

Title: Calculate and Visualize 'SNOTEL' Snow Data and Seasonality
Description: Programmatic interface to the 'SNOTEL' snow data (<https://www.nrcs.usda.gov/programs-initiatives/sswsf-snow-survey-and-water-supply-forecasting-program>). Provides easy downloads of snow data into your R work space or a local directory. Additional post-processing routines to extract snow season indexes are provided.
Author: Koen Hufkens [aut, cre] , BlueGreen Labs [cph, fnd]
Maintainer: Koen Hufkens <koen.hufkens@gmail.com>

Diff between snotelr versions 1.2 dated 2023-09-16 and 1.4 dated 2024-05-23

 DESCRIPTION                    |   11 ++---
 MD5                            |   12 ++---
 R/snotel_info.r                |    2 
 R/snotel_phenology.r           |    6 +-
 build/vignette.rds             |binary
 inst/doc/snotelr-vignette.html |   84 ++++++++++++++++++++---------------------
 man/snotel_phenology.Rd        |    4 +
 7 files changed, 62 insertions(+), 57 deletions(-)

More information about snotelr at CRAN
Permanent link

Package saeTrafo updated to version 1.0.3 with previous version 1.0.2 dated 2023-12-11

Title: Transformations for Unit-Level Small Area Models
Description: The aim of this package is to offer new methodology for unit-level small area models under transformations and limited population auxiliary information. In addition to this new methodology, the widely used nested error regression model without transformations (see "An Error-Components Model for Prediction of County Crop Areas Using Survey and Satellite Data" by Battese, Harter and Fuller (1988) <doi:10.1080/01621459.1988.10478561>) and its well-known uncertainty estimate (see "The estimation of the mean squared error of small-area estimators" by Prasad and Rao (1990) <doi:10.1080/01621459.1995.10476570>) are provided. In this package, the log transformation and the data-driven log-shift transformation are provided. If a transformation is selected, an appropriate method is chosen depending on the respective input of the population data: Individual population data (see "Empirical best prediction under a nested error model with log transformation" by Molina and Martín (2018) & [...truncated...]
Author: Nora Wuerz [aut]
Maintainer: Nora Wuerz <nora.wuerz@uni-bamberg.de>

Diff between saeTrafo versions 1.0.2 dated 2023-12-11 and 1.0.3 dated 2024-05-23

 DESCRIPTION           |    6 +++---
 MD5                   |    8 ++++----
 R/MSE.R               |   24 +++++++++++++++---------
 R/framework_NER.R     |    1 +
 R/helping_functions.R |    2 +-
 5 files changed, 24 insertions(+), 17 deletions(-)

More information about saeTrafo at CRAN
Permanent link

Package Rilostat updated to version 2.1.0 with previous version 2.0.0 dated 2024-02-20

Title: ILO Open Data via Ilostat Bulk Download Facility
Description: Tools to download data from the ilostat database <https://ilostat.ilo.org> together with search and manipulation utilities.
Author: David Bescond [aut, cre] , Mabelin Villarreal-Fuentes [ctb] , ILO Department of Statistics [cph, fnd]
Maintainer: David Bescond <bescond@ilo.org>

Diff between Rilostat versions 2.0.0 dated 2024-02-20 and 2.1.0 dated 2024-05-23

 Rilostat-2.0.0/Rilostat/R/sdmx_ilostat.R            |only
 Rilostat-2.0.0/Rilostat/man/sdmx_ilostat.Rd         |only
 Rilostat-2.1.0/Rilostat/DESCRIPTION                 |   10 +-
 Rilostat-2.1.0/Rilostat/MD5                         |   26 +++---
 Rilostat-2.1.0/Rilostat/NAMESPACE                   |    7 -
 Rilostat-2.1.0/Rilostat/NEWS.md                     |    4 +
 Rilostat-2.1.0/Rilostat/R/Rilostat.R                |   12 ---
 Rilostat-2.1.0/Rilostat/R/distribution_ilostat.r    |   77 +++-----------------
 Rilostat-2.1.0/Rilostat/R/get_ilostat.R             |   30 +++++--
 Rilostat-2.1.0/Rilostat/R/get_ilostat_dic.R         |    6 -
 Rilostat-2.1.0/Rilostat/R/get_ilostat_toc.R         |    6 -
 Rilostat-2.1.0/Rilostat/R/label_ilostat.R           |    1 
 Rilostat-2.1.0/Rilostat/README.md                   |    1 
 Rilostat-2.1.0/Rilostat/man/Rilostat.Rd             |    4 -
 Rilostat-2.1.0/Rilostat/man/distribution_ilostat.Rd |    5 +
 15 files changed, 70 insertions(+), 119 deletions(-)

More information about Rilostat at CRAN
Permanent link

Package ggdaynight updated to version 0.1.3 with previous version 0.1.1 dated 2024-05-21

Title: Add Day/Night Patterns to 'ggplot2' Plots
Description: It provides a custom 'ggplot2' geom to add day/night patterns to plots. It visually distinguishes daytime and nighttime periods. It is useful for visualizing data that spans multiple days and for highlighting diurnal patterns.
Author: Gabriel S. Pires [aut, cre, cph]
Maintainer: Gabriel S. Pires <gabriel.slpires@gmail.com>

Diff between ggdaynight versions 0.1.1 dated 2024-05-21 and 0.1.3 dated 2024-05-23

 DESCRIPTION                                            |    6 -
 MD5                                                    |   17 ++-
 NEWS.md                                                |    6 +
 R/geom_daynight.R                                      |   77 +++++++++++------
 README.md                                              |   13 ++
 inst                                                   |only
 man/figures/logo.png                                   |only
 tests/testthat.R                                       |   25 ++---
 tests/testthat/_snaps/geom_daynight/only-daytime.svg   |only
 tests/testthat/_snaps/geom_daynight/only-nighttime.svg |only
 tests/testthat/test-geom_daynight.R                    |   74 +++++++++++++++-
 11 files changed, 168 insertions(+), 50 deletions(-)

More information about ggdaynight at CRAN
Permanent link

Package microeco updated to version 1.7.1 with previous version 1.7.0 dated 2024-05-15

Title: Microbial Community Ecology Data Analysis
Description: A series of statistical and plotting approaches in microbial community ecology based on the R6 class. The classes are designed for data preprocessing, taxa abundance plotting, alpha diversity analysis, beta diversity analysis, differential abundance test, null model analysis, network analysis, machine learning, environmental data analysis and functional analysis.
Author: Chi Liu [aut, cre], Felipe R. P. Mansoldo [ctb], Minjie Yao [ctb], Xiangzhen Li [ctb]
Maintainer: Chi Liu <liuchi0426@126.com>

Diff between microeco versions 1.7.0 dated 2024-05-15 and 1.7.1 dated 2024-05-23

 DESCRIPTION       |    6 +++---
 MD5               |    8 ++++----
 R/microtable.R    |    2 +-
 R/trans_alpha.R   |    8 ++++++--
 man/microtable.Rd |    2 +-
 5 files changed, 15 insertions(+), 11 deletions(-)

More information about microeco at CRAN
Permanent link

Package blockCV updated to version 3.1-4 with previous version 3.1-3 dated 2023-06-04

Title: Spatial and Environmental Blocking for K-Fold and LOO Cross-Validation
Description: Creating spatially or environmentally separated folds for cross-validation to provide a robust error estimation in spatially structured environments; Investigating and visualising the effective range of spatial autocorrelation in continuous raster covariates and point samples to find an initial realistic distance band to separate training and testing datasets spatially described in Valavi, R. et al. (2019) <doi:10.1111/2041-210X.13107>.
Author: Roozbeh Valavi [aut, cre] , Jane Elith [aut], Jose Lahoz-Monfort [aut], Ian Flint [aut], Gurutzeta Guillera-Arroita [aut]
Maintainer: Roozbeh Valavi <valavi.r@gmail.com>

Diff between blockCV versions 3.1-3 dated 2023-06-04 and 3.1-4 dated 2024-05-23

 DESCRIPTION              |   10 
 MD5                      |   32 
 R/RcppExports.R          |   14 
 R/blockCV.R              |   61 -
 R/cv_cluster.R           |    2 
 R/cv_spatial.R           |    6 
 build/vignette.rds       |binary
 inst/doc/tutorial_1.R    |  376 +++++-----
 inst/doc/tutorial_1.html | 1719 +++++++++++++++++++++++------------------------
 inst/doc/tutorial_2.R    |  345 ++++-----
 inst/doc/tutorial_2.Rmd  |   17 
 inst/doc/tutorial_2.html | 1343 ++++++++++++++++++------------------
 man/blockCV.Rd           |    8 
 man/cv_cluster.Rd        |    2 
 man/cv_spatial.Rd        |    4 
 src/nndm.cpp             |   15 
 vignettes/tutorial_2.Rmd |   17 
 17 files changed, 1990 insertions(+), 1981 deletions(-)

More information about blockCV at CRAN
Permanent link

Package SWTools updated to version 1.0.2 with previous version 1.0.1 dated 2024-02-02

Title: Helper Tools for Australian Hydrologists
Description: Functions to speed up work flow for hydrological analysis. Focused on Australian climate data (SILO climate data), hydrological models (eWater Source) and in particular South Australia (<https://water.data.sa.gov.au> hydrological data).
Author: Matt Gibbs [aut, cre]
Maintainer: Matt Gibbs <gibbs.ms@gmail.com>

Diff between SWTools versions 1.0.1 dated 2024-02-02 and 1.0.2 dated 2024-05-23

 DESCRIPTION                  |   10 +++++-----
 MD5                          |    8 ++++----
 NEWS.md                      |    4 ++++
 R/SILO.R                     |   14 +++++++-------
 R/SILOFindSitesByShapefile.R |   13 +++++--------
 5 files changed, 25 insertions(+), 24 deletions(-)

More information about SWTools at CRAN
Permanent link

Package moderate.mediation updated to version 0.0.10 with previous version 0.0.9 dated 2024-04-23

Title: Causal Moderated Mediation Analysis
Description: Causal moderated mediation analysis using the methods proposed by Qin and Wang (2023) <doi:10.3758/s13428-023-02095-4>. Causal moderated mediation analysis is crucial for investigating how, for whom, and where a treatment is effective by assessing the heterogeneity of mediation mechanism across individuals and contexts. This package enables researchers to estimate and test the conditional and moderated mediation effects, assess their sensitivity to unmeasured pre-treatment confounding, and visualize the results. The package is built based on the quasi-Bayesian Monte Carlo method, because it has relatively better performance at small sample sizes, and its running speed is the fastest. The package is applicable to a treatment of any scale, a binary or continuous mediator, a binary or continuous outcome, and one or more moderators of any scale.
Author: Xu Qin [aut, cre, cph], Lijuan Wang [ctb]
Maintainer: Xu Qin <xuqin@pitt.edu>

Diff between moderate.mediation versions 0.0.9 dated 2024-04-23 and 0.0.10 dated 2024-05-23

 DESCRIPTION            |   10 +++++-----
 MD5                    |   10 +++++-----
 NAMESPACE              |    1 +
 R/moderate.mediation.R |   26 ++++++++++++++++++--------
 man/modmed.Rd          |    5 +++--
 man/summary_modmed.Rd  |    7 +++++--
 6 files changed, 37 insertions(+), 22 deletions(-)

More information about moderate.mediation at CRAN
Permanent link

Wed, 22 May 2024

Package newsmap updated to version 0.9.0 with previous version 0.8.3 dated 2023-10-07

Title: Semi-Supervised Model for Geographical Document Classification
Description: Semissupervised model for geographical document classification (Watanabe 2018) <doi:10.1080/21670811.2017.1293487>. This package currently contains seed dictionaries in English, German, French, Spanish, Italian, Russian, Hebrew, Arabic, Turkish, Japanese and Chinese (Simplified and Traditional).
Author: Kohei Watanabe [aut, cre, cph], Stefan Mueller [aut], Dani Madrid-Morales [aut], Katerina Tertytchnaya [aut], Ke Cheng [aut], Chung-hong Chan [aut], Claude Grasland [aut], Giuseppe Carteny [aut], Elad Segev [aut], Dai Yamao [aut], Barbara Ellynes Zucc [...truncated...]
Maintainer: Kohei Watanabe <watanabe.kohei@gmail.com>

Diff between newsmap versions 0.8.3 dated 2023-10-07 and 0.9.0 dated 2024-05-22

 DESCRIPTION                           |   16 +++---
 MD5                                   |   25 +++++----
 NAMESPACE                             |    2 
 NEWS.md                               |    9 +++
 R/data.R                              |   10 +++
 R/textmodel.R                         |   29 +++++++++--
 R/utils.R                             |   13 +++++
 data/data_dictionary_newsmap_tr.RData |only
 man/coef.textmodel_newsmap.Rd         |only
 man/data_dictionary_newsmap_ru.Rd     |    2 
 man/data_dictionary_newsmap_tr.Rd     |only
 man/predict.textmodel_newsmap.Rd      |   86 +++++++++++++++++-----------------
 tests/testthat/test-data.R            |    8 ++-
 tests/testthat/test-dictionary.R      |   20 +++++++
 tests/testthat/test-textmodel.R       |   49 ++++++++++++++++++-
 15 files changed, 198 insertions(+), 71 deletions(-)

More information about newsmap at CRAN
Permanent link

Package mmibain updated to version 0.2.0 with previous version 0.1.1 dated 2023-11-08

Title: Bayesian Informative Hypotheses Evaluation Web Applications
Description: Researchers often have expectations about the relations between means of different groups or standardized regression coefficients; using informative hypothesis testing to incorporate these expectations into the analysis through order constraints increases statistical power Vanbrabant and Rosseel (2020) <doi:10.4324/9780429273872-14>. Another valuable tool, the Bayes factor, can evaluate evidence for multiple hypotheses without concerns about multiple testing, and can be used in Bayesian updating Hoijtink, Mulder, van Lissa & Gu (2019) <doi:10.1037/met0000201>. The 'bain' R package enables informative hypothesis testing using the Bayes factor. The 'mmibain' package provides 'shiny' web applications based on 'bain'. The RepliCrisis() function launches a 'shiny' card game to simulate the evaluation of replication studies while the mmibain() function launches a 'shiny' application to fit Bayesian informative hypotheses evaluation models from 'bain'.
Author: Mackson Ncube [aut, cre], mightymetrika, LLC [cph, fnd]
Maintainer: Mackson Ncube <macksonncube.stats@gmail.com>

Diff between mmibain versions 0.1.1 dated 2023-11-08 and 0.2.0 dated 2024-05-22

 DESCRIPTION                           |   12 
 LICENSE                               |    4 
 MD5                                   |   23 -
 NAMESPACE                             |    2 
 R/BF_for_everyone.R                   |only
 R/BFfe.R                              |only
 R/RepliCrisis.R                       |    2 
 R/helpers.R                           |  150 ++++----
 R/mmibain.R                           |  569 +++++++++++++++++++---------------
 man/BF_for_everyone.Rd                |only
 man/BFfe.Rd                           |only
 man/RepliCrisis.Rd                    |    2 
 man/mmibain.Rd                        |    2 
 tests/testthat/test-BF_for_everyone.R |only
 tests/testthat/test-rc_game_mgmt.R    |  358 ++++++++++-----------
 15 files changed, 605 insertions(+), 519 deletions(-)

More information about mmibain at CRAN
Permanent link

Package healthdb updated to version 0.3.1 with previous version 0.3.0 dated 2024-05-15

Title: Working with Healthcare Databases
Description: A system for identifying diseases or events from healthcare databases and preparing data for epidemiological studies. It includes capabilities not supported by 'SQL', such as matching strings by 'stringr' style regular expressions, and can compute comorbidity scores (Quan et al. (2005) <doi:10.1097/01.mlr.0000182534.19832.83>) directly on a database server. The implementation is based on 'dbplyr' with full 'tidyverse' compatibility.
Author: Kevin Hu [aut, cre, cph]
Maintainer: Kevin Hu <kevin.hu@bccdc.ca>

Diff between healthdb versions 0.3.0 dated 2024-05-15 and 0.3.1 dated 2024-05-22

 DESCRIPTION                       |    6 
 MD5                               |   50 +--
 NEWS.md                           |   10 
 R/bind_source.R                   |   15 
 R/collapse_episode.R              |    2 
 R/compute_comorbidity.R           |    2 
 R/db_helpers.R                    |    4 
 R/fetch_var.R                     |    2 
 R/identify_rows_sql.R             |    2 
 R/if_dates.R                      |    2 
 R/lookup.R                        |    2 
 R/pool_case.R                     |   71 ++--
 R/restrict_dates.R                |    2 
 R/restrict_dates_sql.R            |   21 -
 R/restrict_n.R                    |    2 
 inst/doc/healthdb.html            |  576 +++++++++++++++++++-------------------
 man/bind_source.Rd                |    2 
 man/collapse_episode.Rd           |    2 
 man/if_date.Rd                    |    2 
 man/lookup.Rd                     |    4 
 man/pool_case.Rd                  |    2 
 man/restrict_date.Rd              |    2 
 man/restrict_n.Rd                 |    2 
 tests/testthat/test-bind_source.R |    8 
 tests/testthat/test-fetch_var.R   |  142 ++++++---
 tests/testthat/test-pool_case.R   |   38 ++
 26 files changed, 549 insertions(+), 424 deletions(-)

More information about healthdb at CRAN
Permanent link

Package adbcsqlite updated to version 0.12.0 with previous version 0.11.0.1 dated 2024-04-17

Title: 'Arrow' Database Connectivity ('ADBC') 'SQLite' Driver
Description: Provides a developer-facing interface to the 'Arrow' Database Connectivity ('ADBC') 'SQLite' driver for the purposes of building high-level database interfaces for users. 'ADBC' <https://arrow.apache.org/adbc/> is an API standard for database access libraries that uses 'Arrow' for result sets and query parameters.
Author: Dewey Dunnington [aut, cre] , Apache Arrow [aut, cph], Apache Software Foundation [cph]
Maintainer: Dewey Dunnington <dewey@dunnington.ca>

Diff between adbcsqlite versions 0.11.0.1 dated 2024-04-17 and 0.12.0 dated 2024-05-22

 adbcsqlite-0.11.0.1/adbcsqlite/src/c/driver/framework/base.cc |only
 adbcsqlite-0.11.0.1/adbcsqlite/src/c/driver/framework/base.h  |only
 adbcsqlite-0.11.0.1/adbcsqlite/tools/sqlite3.c                |only
 adbcsqlite-0.11.0.1/adbcsqlite/tools/sqlite3.h                |only
 adbcsqlite-0.12.0/adbcsqlite/DESCRIPTION                      |    6 -
 adbcsqlite-0.12.0/adbcsqlite/MD5                              |   16 +--
 adbcsqlite-0.12.0/adbcsqlite/README.md                        |   28 ++----
 adbcsqlite-0.12.0/adbcsqlite/configure                        |    6 -
 adbcsqlite-0.12.0/adbcsqlite/src/Makevars.in                  |    2 
 adbcsqlite-0.12.0/adbcsqlite/src/adbc.h                       |   42 +++++++++-
 adbcsqlite-0.12.0/adbcsqlite/src/c/driver/common/options.h    |   21 -----
 11 files changed, 64 insertions(+), 57 deletions(-)

More information about adbcsqlite at CRAN
Permanent link

Package adbcpostgresql updated to version 0.12.0 with previous version 0.11.0.1 dated 2024-04-15

Title: 'Arrow' Database Connectivity ('ADBC') 'PostgreSQL' Driver
Description: Provides a developer-facing interface to the 'Arrow' Database Connectivity ('ADBC') 'PostgreSQL' driver for the purposes of building high-level database interfaces for users. 'ADBC' <https://arrow.apache.org/adbc/> is an API standard for database access libraries that uses 'Arrow' for result sets and query parameters.
Author: Dewey Dunnington [aut, cre] , Apache Arrow [aut, cph], Apache Software Foundation [cph]
Maintainer: Dewey Dunnington <dewey@dunnington.ca>

Diff between adbcpostgresql versions 0.11.0.1 dated 2024-04-15 and 0.12.0 dated 2024-05-22

 DESCRIPTION                             |    6 ++--
 MD5                                     |   12 ++++-----
 README.md                               |   18 +++++--------
 src/adbc.h                              |   42 +++++++++++++++++++++++++++++---
 src/c/driver/common/options.h           |   21 ----------------
 src/c/driver/postgresql/copy/reader.h   |    1 
 src/c/driver/postgresql/postgres_type.h |    4 +++
 7 files changed, 60 insertions(+), 44 deletions(-)

More information about adbcpostgresql at CRAN
Permanent link

Package adbcdrivermanager updated to version 0.12.0 with previous version 0.11.0 dated 2024-04-02

Title: 'Arrow' Database Connectivity ('ADBC') Driver Manager
Description: Provides a developer-facing interface to 'Arrow' Database Connectivity ('ADBC') for the purposes of driver development, driver testing, and building high-level database interfaces for users. 'ADBC' <https://arrow.apache.org/adbc/> is an API standard for database access libraries that uses 'Arrow' for result sets and query parameters.
Author: Dewey Dunnington [aut, cre] , Apache Arrow [aut, cph], Apache Software Foundation [cph]
Maintainer: Dewey Dunnington <dewey@dunnington.ca>

Diff between adbcdrivermanager versions 0.11.0 dated 2024-04-02 and 0.12.0 dated 2024-05-22

 DESCRIPTION  |    6 +++---
 MD5          |    8 ++++----
 README.md    |   35 ++++++++++++++---------------------
 src/Makevars |    1 +
 src/adbc.h   |   42 +++++++++++++++++++++++++++++++++++++++---
 5 files changed, 61 insertions(+), 31 deletions(-)

More information about adbcdrivermanager at CRAN
Permanent link

Package timeplyr updated to version 0.8.0 with previous version 0.5.0 dated 2023-12-12

Title: Fast Tidy Tools for Date and Date-Time Manipulation
Description: A set of fast tidy functions for wrangling, completing and summarising date and date-time data. It combines 'tidyverse' syntax with the efficiency of 'data.table' and speed of 'collapse'.
Author: Nick Christofides [aut, cre]
Maintainer: Nick Christofides <nick.christofides.r@gmail.com>

Diff between timeplyr versions 0.5.0 dated 2023-12-12 and 0.8.0 dated 2024-05-22

 timeplyr-0.5.0/timeplyr/R/cpp_which.R                             |only
 timeplyr-0.5.0/timeplyr/R/fskim.R                                 |only
 timeplyr-0.5.0/timeplyr/R/function_utils.R                        |only
 timeplyr-0.5.0/timeplyr/R/gcd.R                                   |only
 timeplyr-0.5.0/timeplyr/R/num_na.R                                |only
 timeplyr-0.5.0/timeplyr/R/roll_across.R                           |only
 timeplyr-0.5.0/timeplyr/R/sequence.R                              |only
 timeplyr-0.5.0/timeplyr/R/time_diff_gcd.R                         |only
 timeplyr-0.5.0/timeplyr/R/time_distinct.R                         |only
 timeplyr-0.5.0/timeplyr/R/time_mutate.R                           |only
 timeplyr-0.5.0/timeplyr/R/time_roll_diff.R                        |only
 timeplyr-0.5.0/timeplyr/R/time_summarise.R                        |only
 timeplyr-0.5.0/timeplyr/R/top_n.R                                 |only
 timeplyr-0.5.0/timeplyr/man/cpp_which.Rd                          |only
 timeplyr-0.5.0/timeplyr/man/fast_stats.Rd                         |only
 timeplyr-0.5.0/timeplyr/man/fskim.Rd                              |only
 timeplyr-0.5.0/timeplyr/man/gcd.Rd                                |only
 timeplyr-0.5.0/timeplyr/man/groups_equal.Rd                       |only
 timeplyr-0.5.0/timeplyr/man/gsum.Rd                               |only
 timeplyr-0.5.0/timeplyr/man/gunique.Rd                            |only
 timeplyr-0.5.0/timeplyr/man/num_na.Rd                             |only
 timeplyr-0.5.0/timeplyr/man/roll_apply.Rd                         |only
 timeplyr-0.5.0/timeplyr/man/sequence.Rd                           |only
 timeplyr-0.5.0/timeplyr/man/time_diff_gcd.Rd                      |only
 timeplyr-0.5.0/timeplyr/man/time_distinct.Rd                      |only
 timeplyr-0.5.0/timeplyr/man/time_mutate.Rd                        |only
 timeplyr-0.5.0/timeplyr/man/time_roll_diff.Rd                     |only
 timeplyr-0.5.0/timeplyr/man/time_summarise.Rd                     |only
 timeplyr-0.5.0/timeplyr/man/top_n.Rd                              |only
 timeplyr-0.5.0/timeplyr/man/weighted_mean.Rd                      |only
 timeplyr-0.5.0/timeplyr/src/gcd.cpp                               |only
 timeplyr-0.5.0/timeplyr/src/lag.cpp                               |only
 timeplyr-0.5.0/timeplyr/src/num_na.cpp                            |only
 timeplyr-0.5.0/timeplyr/src/sequence.cpp                          |only
 timeplyr-0.5.0/timeplyr/src/which.cpp                             |only
 timeplyr-0.5.0/timeplyr/tests/testthat/_snaps/fskim.md            |only
 timeplyr-0.5.0/timeplyr/tests/testthat/_snaps/time_summarise.md   |only
 timeplyr-0.5.0/timeplyr/tests/testthat/test-fskim.R               |only
 timeplyr-0.5.0/timeplyr/tests/testthat/test-gcd.R                 |only
 timeplyr-0.5.0/timeplyr/tests/testthat/test-gunique.R             |only
 timeplyr-0.5.0/timeplyr/tests/testthat/test-lag.R                 |only
 timeplyr-0.5.0/timeplyr/tests/testthat/test-num_na.R              |only
 timeplyr-0.5.0/timeplyr/tests/testthat/test-sequence2.R           |only
 timeplyr-0.5.0/timeplyr/tests/testthat/test-time_count.R          |only
 timeplyr-0.5.0/timeplyr/tests/testthat/test-time_mutate.R         |only
 timeplyr-0.5.0/timeplyr/tests/testthat/test-time_summarise.R      |only
 timeplyr-0.5.0/timeplyr/tests/testthat/test-which2.R              |only
 timeplyr-0.8.0/timeplyr/DESCRIPTION                               |   17 
 timeplyr-0.8.0/timeplyr/MD5                                       |  292 ++--
 timeplyr-0.8.0/timeplyr/NAMESPACE                                 |  123 +
 timeplyr-0.8.0/timeplyr/NEWS.md                                   |   26 
 timeplyr-0.8.0/timeplyr/R/GRP_utils.R                             |  342 ++++-
 timeplyr-0.8.0/timeplyr/R/age_years.R                             |    4 
 timeplyr-0.8.0/timeplyr/R/calendar.R                              |   22 
 timeplyr-0.8.0/timeplyr/R/cpp11.R                                 |  112 -
 timeplyr-0.8.0/timeplyr/R/crossed_join.R                          |   17 
 timeplyr-0.8.0/timeplyr/R/df_utils.R                              |  539 ++++----
 timeplyr-0.8.0/timeplyr/R/dt_utils.R                              |   78 -
 timeplyr-0.8.0/timeplyr/R/duplicate_rows.R                        |  142 +-
 timeplyr-0.8.0/timeplyr/R/edf.R                                   |   17 
 timeplyr-0.8.0/timeplyr/R/fast_stats.R                            |   63 
 timeplyr-0.8.0/timeplyr/R/fcount.R                                |   77 +
 timeplyr-0.8.0/timeplyr/R/fdistinct.R                             |    4 
 timeplyr-0.8.0/timeplyr/R/fexpand.R                               |   78 -
 timeplyr-0.8.0/timeplyr/R/ffilter.R                               |only
 timeplyr-0.8.0/timeplyr/R/fgroup_by.R                             |   51 
 timeplyr-0.8.0/timeplyr/R/fselect.R                               |   20 
 timeplyr-0.8.0/timeplyr/R/fslice.R                                |   90 -
 timeplyr-0.8.0/timeplyr/R/get_time_delay.R                        |   15 
 timeplyr-0.8.0/timeplyr/R/group_collapse.R                        |  125 -
 timeplyr-0.8.0/timeplyr/R/group_id.R                              |  147 +-
 timeplyr-0.8.0/timeplyr/R/groups_equal.R                          |   27 
 timeplyr-0.8.0/timeplyr/R/growth.R                                |   16 
 timeplyr-0.8.0/timeplyr/R/growth_rate.R                           |   15 
 timeplyr-0.8.0/timeplyr/R/gsum.R                                  |  109 -
 timeplyr-0.8.0/timeplyr/R/gunique.R                               |  165 +-
 timeplyr-0.8.0/timeplyr/R/interval_utils.R                        |only
 timeplyr-0.8.0/timeplyr/R/is_na.Interval.R                        |only
 timeplyr-0.8.0/timeplyr/R/iso_week.R                              |   13 
 timeplyr-0.8.0/timeplyr/R/missing_dates.R                         |   14 
 timeplyr-0.8.0/timeplyr/R/periods.R                               |   98 -
 timeplyr-0.8.0/timeplyr/R/q_summarise.R                           |    4 
 timeplyr-0.8.0/timeplyr/R/reset.R                                 |only
 timeplyr-0.8.0/timeplyr/R/roll.R                                  |   26 
 timeplyr-0.8.0/timeplyr/R/roll_apply.R                            |  105 -
 timeplyr-0.8.0/timeplyr/R/roll_lag.R                              |  161 --
 timeplyr-0.8.0/timeplyr/R/roll_na_fill.R                          |   17 
 timeplyr-0.8.0/timeplyr/R/roll_utils.R                            |  181 +-
 timeplyr-0.8.0/timeplyr/R/stat_summarise.R                        |   33 
 timeplyr-0.8.0/timeplyr/R/time_aggregate.R                        |  122 +
 timeplyr-0.8.0/timeplyr/R/time_by.R                               |   81 -
 timeplyr-0.8.0/timeplyr/R/time_core.R                             |  147 +-
 timeplyr-0.8.0/timeplyr/R/time_count.R                            |  319 ----
 timeplyr-0.8.0/timeplyr/R/time_cut.R                              |  155 +-
 timeplyr-0.8.0/timeplyr/R/time_deprecated_functions.R             |only
 timeplyr-0.8.0/timeplyr/R/time_diff.R                             |   14 
 timeplyr-0.8.0/timeplyr/R/time_elapsed.R                          |    4 
 timeplyr-0.8.0/timeplyr/R/time_episodes.R                         |  154 ++
 timeplyr-0.8.0/timeplyr/R/time_expand.R                           |  204 +--
 timeplyr-0.8.0/timeplyr/R/time_gaps.R                             |   21 
 timeplyr-0.8.0/timeplyr/R/time_gcd_diff.R                         |only
 timeplyr-0.8.0/timeplyr/R/time_ggplot.R                           |   19 
 timeplyr-0.8.0/timeplyr/R/time_id.R                               |    9 
 timeplyr-0.8.0/timeplyr/R/time_interval.R                         |  354 +++--
 timeplyr-0.8.0/timeplyr/R/time_is_regular.R                       |    6 
 timeplyr-0.8.0/timeplyr/R/time_lag.R                              |    2 
 timeplyr-0.8.0/timeplyr/R/time_period.R                           |only
 timeplyr-0.8.0/timeplyr/R/time_roll.R                             |  107 -
 timeplyr-0.8.0/timeplyr/R/time_seq.R                              |   18 
 timeplyr-0.8.0/timeplyr/R/time_seq_fill.R                         |only
 timeplyr-0.8.0/timeplyr/R/time_utils.R                            |  653 ++++-----
 timeplyr-0.8.0/timeplyr/R/timeplyr.R                              |    3 
 timeplyr-0.8.0/timeplyr/R/ts_as_tibble.R                          |   10 
 timeplyr-0.8.0/timeplyr/R/unit_guess.R                            |   10 
 timeplyr-0.8.0/timeplyr/R/utils.R                                 |only
 timeplyr-0.8.0/timeplyr/R/weighted_mean.R                         |   20 
 timeplyr-0.8.0/timeplyr/R/year_month.R                            |   43 
 timeplyr-0.8.0/timeplyr/R/zzz.R                                   |  209 +--
 timeplyr-0.8.0/timeplyr/README.md                                 |  664 +---------
 timeplyr-0.8.0/timeplyr/man/calendar.Rd                           |   13 
 timeplyr-0.8.0/timeplyr/man/crossed_join.Rd                       |    6 
 timeplyr-0.8.0/timeplyr/man/duplicate_rows.Rd                     |   24 
 timeplyr-0.8.0/timeplyr/man/edf.Rd                                |    5 
 timeplyr-0.8.0/timeplyr/man/fcount.Rd                             |    4 
 timeplyr-0.8.0/timeplyr/man/fexpand.Rd                            |   15 
 timeplyr-0.8.0/timeplyr/man/fgroup_by.Rd                          |    7 
 timeplyr-0.8.0/timeplyr/man/figures/README-unnamed-chunk-16-1.png |binary
 timeplyr-0.8.0/timeplyr/man/figures/README-unnamed-chunk-17-1.png |only
 timeplyr-0.8.0/timeplyr/man/figures/README-unnamed-chunk-34-1.png |binary
 timeplyr-0.8.0/timeplyr/man/figures/README-unnamed-chunk-35-1.png |only
 timeplyr-0.8.0/timeplyr/man/figures/README-unnamed-chunk-35-2.png |only
 timeplyr-0.8.0/timeplyr/man/get_time_delay.Rd                     |    2 
 timeplyr-0.8.0/timeplyr/man/group_collapse.Rd                     |    4 
 timeplyr-0.8.0/timeplyr/man/group_id.Rd                           |    3 
 timeplyr-0.8.0/timeplyr/man/growth_rate.Rd                        |    4 
 timeplyr-0.8.0/timeplyr/man/interval_utils.Rd                     |only
 timeplyr-0.8.0/timeplyr/man/q_summarise.Rd                        |    2 
 timeplyr-0.8.0/timeplyr/man/reset_timeplyr_options.Rd             |only
 timeplyr-0.8.0/timeplyr/man/roll_lag.Rd                           |   66 
 timeplyr-0.8.0/timeplyr/man/roll_na_fill.Rd                       |    2 
 timeplyr-0.8.0/timeplyr/man/stat_summarise.Rd                     |    9 
 timeplyr-0.8.0/timeplyr/man/time_aggregate.Rd                     |   61 
 timeplyr-0.8.0/timeplyr/man/time_by.Rd                            |   42 
 timeplyr-0.8.0/timeplyr/man/time_core.Rd                          |   22 
 timeplyr-0.8.0/timeplyr/man/time_count.Rd                         |  155 --
 timeplyr-0.8.0/timeplyr/man/time_cut.Rd                           |   58 
 timeplyr-0.8.0/timeplyr/man/time_diff.Rd                          |    6 
 timeplyr-0.8.0/timeplyr/man/time_episodes.Rd                      |   33 
 timeplyr-0.8.0/timeplyr/man/time_expand.Rd                        |   14 
 timeplyr-0.8.0/timeplyr/man/time_gaps.Rd                          |    2 
 timeplyr-0.8.0/timeplyr/man/time_gcd_diff.Rd                      |only
 timeplyr-0.8.0/timeplyr/man/time_ggplot.Rd                        |   19 
 timeplyr-0.8.0/timeplyr/man/time_interval.Rd                      |only
 timeplyr-0.8.0/timeplyr/man/year_month.Rd                         |    6 
 timeplyr-0.8.0/timeplyr/src/cpp11.cpp                             |  232 +--
 timeplyr-0.8.0/timeplyr/src/diff.cpp                              |only
 timeplyr-0.8.0/timeplyr/src/is_whole_num.cpp                      |    5 
 timeplyr-0.8.0/timeplyr/src/na_fill.cpp                           |  596 +++-----
 timeplyr-0.8.0/timeplyr/src/roll.cpp                              |only
 timeplyr-0.8.0/timeplyr/src/row_id.cpp                            |   26 
 timeplyr-0.8.0/timeplyr/src/timeplyr_cpp.h                        |only
 timeplyr-0.8.0/timeplyr/src/utils.cpp                             |  510 ++++++-
 timeplyr-0.8.0/timeplyr/tests/testthat.R                          |    1 
 timeplyr-0.8.0/timeplyr/tests/testthat/_snaps/time_by.md          |only
 timeplyr-0.8.0/timeplyr/tests/testthat/_snaps/time_episodes.md    |  458 ------
 timeplyr-0.8.0/timeplyr/tests/testthat/test-calendar.R            |    7 
 timeplyr-0.8.0/timeplyr/tests/testthat/test-duplicate_rows.R      |   74 -
 timeplyr-0.8.0/timeplyr/tests/testthat/test-fexpand.R             |  185 +-
 timeplyr-0.8.0/timeplyr/tests/testthat/test-growth_rate.R         |    6 
 timeplyr-0.8.0/timeplyr/tests/testthat/test-q_summarise.R         |    4 
 timeplyr-0.8.0/timeplyr/tests/testthat/test-roll_lag.R            |only
 timeplyr-0.8.0/timeplyr/tests/testthat/test-stat_summarise.R      |    2 
 timeplyr-0.8.0/timeplyr/tests/testthat/test-time_by.R             |   70 -
 timeplyr-0.8.0/timeplyr/tests/testthat/test-time_core.R           |  170 +-
 timeplyr-0.8.0/timeplyr/tests/testthat/test-time_cut.R            |   66 
 timeplyr-0.8.0/timeplyr/tests/testthat/test-time_diff.R           |   23 
 timeplyr-0.8.0/timeplyr/tests/testthat/test-time_diff_gcd.R       |   78 -
 timeplyr-0.8.0/timeplyr/tests/testthat/test-time_episodes.R       |   35 
 timeplyr-0.8.0/timeplyr/tests/testthat/test-time_expand.R         |  152 +-
 timeplyr-0.8.0/timeplyr/tests/testthat/test-time_seq.R            |  296 ++--
 timeplyr-0.8.0/timeplyr/tests/testthat/test-time_seq_id.R         |    2 
 181 files changed, 4697 insertions(+), 5618 deletions(-)

More information about timeplyr at CRAN
Permanent link

Package tensorEVD updated to version 0.1.2 with previous version 0.1.1 dated 2024-02-08

Title: A Fast Algorithm to Factorize High-Dimensional Tensor Product Matrices
Description: Here we provide tools for the computation and factorization of high-dimensional tensor products that are formed by smaller matrices. The methods are based on properties of Kronecker products (Searle 1982, p. 265, ISBN-10: 0470009616). We evaluated this methodology by benchmark testing and illustrated its use in Gaussian Linear Models ('Lopez-Cruz et al., 2024') <doi:10.1093/g3journal/jkae001>.
Author: Marco Lopez-Cruz [aut, cre], Gustavo de los Campos [aut], Paulino Perez-Rodriguez [aut]
Maintainer: Marco Lopez-Cruz <maraloc@gmail.com>

Diff between tensorEVD versions 0.1.1 dated 2024-02-08 and 0.1.2 dated 2024-05-22

 tensorEVD-0.1.1/tensorEVD/inst/doc/hadamard.R                   |only
 tensorEVD-0.1.1/tensorEVD/inst/doc/hadamard.html                |only
 tensorEVD-0.1.1/tensorEVD/inst/doc/kronecker.R                  |only
 tensorEVD-0.1.1/tensorEVD/inst/doc/kronecker.html               |only
 tensorEVD-0.1.1/tensorEVD/inst/doc/tensorEVD.R                  |only
 tensorEVD-0.1.1/tensorEVD/inst/doc/tensorEVD.html               |only
 tensorEVD-0.1.1/tensorEVD/man/kronecker_covariance.Rd           |only
 tensorEVD-0.1.1/tensorEVD/src/c_kronecker_cov.c                 |only
 tensorEVD-0.1.1/tensorEVD/vignettes/fig_hadamard_bm1.png        |only
 tensorEVD-0.1.1/tensorEVD/vignettes/fig_kronecker_bm1.png       |only
 tensorEVD-0.1.1/tensorEVD/vignettes/fig_kronecker_bm2.png       |only
 tensorEVD-0.1.1/tensorEVD/vignettes/hadamard.Rmd                |only
 tensorEVD-0.1.1/tensorEVD/vignettes/kronecker.Rmd               |only
 tensorEVD-0.1.1/tensorEVD/vignettes/style.css                   |only
 tensorEVD-0.1.1/tensorEVD/vignettes/tensorEVD.Rmd               |only
 tensorEVD-0.1.2/tensorEVD/DESCRIPTION                           |   13 
 tensorEVD-0.1.2/tensorEVD/MD5                                   |   68 
 tensorEVD-0.1.2/tensorEVD/NAMESPACE                             |    1 
 tensorEVD-0.1.2/tensorEVD/NEWS.md                               |    8 
 tensorEVD-0.1.2/tensorEVD/R/Hadamard.R                          |  111 
 tensorEVD-0.1.2/tensorEVD/R/Hadamard_cov.R                      |only
 tensorEVD-0.1.2/tensorEVD/R/Kronecker.R                         |   39 
 tensorEVD-0.1.2/tensorEVD/R/Kronecker_cov.R                     |   83 
 tensorEVD-0.1.2/tensorEVD/R/rrr_functions.R                     |  108 
 tensorEVD-0.1.2/tensorEVD/R/tensorEVD.R                         |   96 
 tensorEVD-0.1.2/tensorEVD/build/vignette.rds                    |binary
 tensorEVD-0.1.2/tensorEVD/inst/CITATION                         |only
 tensorEVD-0.1.2/tensorEVD/inst/Rmd                              |only
 tensorEVD-0.1.2/tensorEVD/inst/doc/tensorEVD-documentation.html | 1823 ----------
 tensorEVD-0.1.2/tensorEVD/man/hadamard.Rd                       |   59 
 tensorEVD-0.1.2/tensorEVD/man/kronecker.Rd                      |   16 
 tensorEVD-0.1.2/tensorEVD/man/multivariate_covariance.Rd        |only
 tensorEVD-0.1.2/tensorEVD/man/tensorEVD.Rd                      |   10 
 tensorEVD-0.1.2/tensorEVD/src/Makevars                          |    1 
 tensorEVD-0.1.2/tensorEVD/src/c_hadamard.c                      |  120 
 tensorEVD-0.1.2/tensorEVD/src/c_tensor_evd.c                    |  131 
 tensorEVD-0.1.2/tensorEVD/src/init.c                            |   12 
 tensorEVD-0.1.2/tensorEVD/src/tensorEVD.h                       |    6 
 tensorEVD-0.1.2/tensorEVD/src/utils.c                           |  133 
 tensorEVD-0.1.2/tensorEVD/vignettes/tensorEVD-documentation.Rmd |   24 
 40 files changed, 773 insertions(+), 2089 deletions(-)

More information about tensorEVD at CRAN
Permanent link

Package PH1XBAR updated to version 0.11.2 with previous version 0.11.1 dated 2023-11-14

Title: Phase I Shewhart X-Bar Chart
Description: The purpose of 'PH1XBAR' is to build a Phase I Shewhart control chart for the basic Shewhart, the variance components and the ARMA models in R for subgrouped and individual data. More details can be found: Yao and Chakraborti (2020) <doi: 10.1002/qre.2793>, Yao and Chakraborti (2021) <doi: 10.1080/08982112.2021.1878220>, and Yao et al. (2023) <doi: 10.1080/00224065.2022.2139783>.
Author: Yuhui Yao [aut, cre], Subha Chakraborti [ctb], Tyler Thomas [ctb], Jason Parton [ctb], Xin Yang [ctb]
Maintainer: Yuhui Yao <yyao17@ua.edu>

Diff between PH1XBAR versions 0.11.1 dated 2023-11-14 and 0.11.2 dated 2024-05-22

 ChangeLog                 |   31 -
 DESCRIPTION               |    9 
 MD5                       |   42 +-
 NAMESPACE                 |   48 +-
 R/PH1ARMA.R               |  274 ++++++++-----
 R/PH1XBAR-package.R       |only
 R/PH1XBAR.R               |  208 ++++++----
 R/data.R                  |   84 ++--
 R/getCC.ARMA.R            |  929 ++++++++++++++++++----------------------------
 R/getCC.BA.R              |    6 
 R/getCC.XBAR.R            |  131 ++++--
 R/others.R                |  108 ++---
 README.md                 |  180 ++++----
 build                     |only
 man/PH1ARMA.Rd            |  124 +++---
 man/PH1XBAR-package.Rd    |   62 +--
 man/PH1XBAR.Rd            |  142 ++++---
 man/bore_diameter_data.Rd |   31 -
 man/getCC.ARMA.Rd         |   82 ++--
 man/getCC.XBAR.Rd         |   74 +--
 man/grinder_data.Rd       |   46 +-
 man/preston_data.Rd       |   15 
 man/snowfall_data.Rd      |   25 -
 23 files changed, 1377 insertions(+), 1274 deletions(-)

More information about PH1XBAR at CRAN
Permanent link

Package move2 updated to version 0.3.0 with previous version 0.2.7 dated 2023-12-13

Title: Processing and Analysing Animal Trajectories
Description: Tools to handle, manipulate and explore trajectory data, with an emphasis on data from tracked animals. The package is designed to support large studies with several million location records and keep track of units where possible. Data import directly from 'movebank' <https://www.movebank.org/cms/movebank-main> and files is facilitated.
Author: Bart Kranstauber [aut, cre] , Kamran Safi [aut] , Anne K. Scharf [aut]
Maintainer: Bart Kranstauber <b.kranstauber@uva.nl>

Diff between move2 versions 0.2.7 dated 2023-12-13 and 0.3.0 dated 2024-05-22

 DESCRIPTION                                                |   12 
 MD5                                                        |  119 ++--
 NAMESPACE                                                  |   13 
 NEWS.md                                                    |   20 
 R/aaa.R                                                    |   16 
 R/assertions.R                                             |   28 -
 R/import-standalone-s3-register.R                          |only
 R/movebank_api.R                                           |   16 
 R/movebank_constants.R                                     |   71 ++
 R/movebank_get_vocabulary.R                                |   15 
 R/mt_as_track_attribute.R                                  |   12 
 R/mt_filter_unique.R                                       |   34 +
 R/mt_read.R                                                |   76 ++
 R/mt_stack.R                                               |   65 +-
 R/mt_track_id.R                                            |   14 
 R/mt_track_lines.R                                         |    2 
 R/new_move.R                                               |   41 -
 R/tidy.R                                                   |   55 -
 README.md                                                  |    9 
 build/vignette.rds                                         |binary
 inst/WORDLIST                                              |   23 
 inst/doc/albatross.R                                       |only
 inst/doc/albatross.Rmd                                     |only
 inst/doc/albatross.html                                    |only
 inst/doc/convert.R                                         |  126 ++--
 inst/doc/convert.Rmd                                       |  116 ++--
 inst/doc/convert.html                                      |  206 +++----
 inst/doc/filtering_tracks.R                                |   32 -
 inst/doc/filtering_tracks.html                             |  204 +++----
 inst/doc/movebank.R                                        |   52 -
 inst/doc/movebank.Rmd                                      |    9 
 inst/doc/movebank.html                                     |  360 +++++--------
 inst/doc/programming_move2_object.R                        |    4 
 inst/doc/programming_move2_object.Rmd                      |  184 +++---
 inst/doc/programming_move2_object.html                     |  200 +++----
 inst/doc/trajectory_analysis.R                             |   22 
 inst/doc/trajectory_analysis.Rmd                           |    4 
 inst/doc/trajectory_analysis.html                          |  196 +++----
 inst/extdata/Galapagos_Albatrosses-1332012225316982996.zip |only
 man/assertions.Rd                                          |   16 
 man/movebank_download_study.Rd                             |    2 
 man/movebank_get_vocabulary.Rd                             |   15 
 man/mt_example.Rd                                          |   22 
 man/mt_filter_unique.Rd                                    |   11 
 man/mt_read.Rd                                             |   14 
 man/mt_stack.Rd                                            |   20 
 man/mt_track_data.Rd                                       |    1 
 tests/testthat/test-assertions.R                           |   19 
 tests/testthat/test-movebank_api.R                         |   32 +
 tests/testthat/test-mt_as_move2.R                          |   12 
 tests/testthat/test-mt_as_track_attribute.R                |   23 
 tests/testthat/test-mt_filter_unique.R                     |   33 +
 tests/testthat/test-mt_interpolate.R                       |    2 
 tests/testthat/test-mt_read.R                              |   20 
 tests/testthat/test-mt_set_track_id.R                      |   10 
 tests/testthat/test-mt_stack.R                             |  116 ++++
 tests/testthat/test-round_trip_rbind.R                     |    8 
 tests/testthat/test-subset.R                               |   21 
 tests/testthat/test-units.R                                |only
 vignettes/albatross.Rmd                                    |only
 vignettes/convert.Rmd                                      |  116 ++--
 vignettes/movebank.Rmd                                     |    9 
 vignettes/programming_move2_object.Rmd                     |  184 +++---
 vignettes/trajectory_analysis.Rmd                          |    4 
 64 files changed, 1814 insertions(+), 1252 deletions(-)

More information about move2 at CRAN
Permanent link

Package jewel updated to version 2.0.2 with previous version 2.0.1 dated 2023-06-13

Title: Graphical Models Estimation from Multiple Sources
Description: Estimates networks of conditional dependencies (Gaussian graphical models) from multiple classes of data (similar but not exactly, i.e. measurements on different equipment, in different locations or for various sub-types). Package also allows to generate simulation data and evaluate the performance. Implementation of the method described in Angelini, De Canditiis and Plaksienko (2022) <doi:10.3390/math10213983>.
Author: Anna Plaksienko [aut, cre] , Claudia Angelini [aut] , Daniela De Canditiis [aut]
Maintainer: Anna Plaksienko <anna@plaxienko.com>

Diff between jewel versions 2.0.1 dated 2023-06-13 and 2.0.2 dated 2024-05-22

 DESCRIPTION                  |    8 ++---
 MD5                          |   12 ++++----
 R/MatrixFunctions.R          |    3 +-
 R/jewel_inner.R              |   14 ++++++---
 build/vignette.rds           |binary
 inst/doc/jewel_vignette.R    |    2 -
 inst/doc/jewel_vignette.html |   64 +++++++++++++++++++++----------------------
 7 files changed, 54 insertions(+), 49 deletions(-)

More information about jewel at CRAN
Permanent link

Package inldata updated to version 1.2.3 with previous version 1.2.1 dated 2024-05-17

Title: Collection of Datasets for the USGS-INL Monitoring Networks
Description: A collection of analysis-ready datasets for the U.S. Geological Survey - Idaho National Laboratory (USGS-INL) groundwater and surface-water monitoring networks, administered by the USGS-INL Project Office in cooperation with the U.S. Department of Energy. The data collected from wells and surface-water stations at the Idaho National Laboratory and surrounding areas have been used to describe the effects of waste disposal on water contained in the eastern Snake River Plain aquifer, located in the southeastern part of Idaho, and the availability of water for long-term consumptive and industrial use. The package includes long-term monitoring records dating back to measurements from 1922. Geospatial data describing the areas from which samples were collected or observations were made are also included in the package. Bundling this data into a single package significantly reduces the magnitude of data processing for researchers and provides a way to distribute the data along with its docume [...truncated...]
Author: Jason C. Fisher [aut, cre] , Allison R. Trcka [aut] , Kerri C. Treinen [aut]
Maintainer: Jason C. Fisher <jfisher@usgs.gov>

Diff between inldata versions 1.2.1 dated 2024-05-17 and 1.2.3 dated 2024-05-22

 DESCRIPTION                        |    6 +-
 MD5                                |  108 ++++++++++++++++++-------------------
 NEWS.md                            |    9 +++
 R/assert_url.R                     |    2 
 R/cities.R                         |    2 
 R/clean_sf.R                       |    3 -
 R/counties.R                       |    2 
 R/dem.R                            |    3 -
 R/esrp.R                           |    2 
 R/facilities.R                     |    2 
 R/idaho.R                          |    2 
 R/inl.R                            |    2 
 R/iwd.R                            |    2 
 R/lakes.R                          |    2 
 R/make_datasets.R                  |    7 +-
 R/make_dm.R                        |    3 -
 R/make_erd.R                       |    5 -
 R/make_shade.R                     |    4 -
 R/percponds.R                      |    2 
 R/roads.R                          |    2 
 R/sites.R                          |    2 
 R/streams.R                        |    2 
 R/utils.R                          |    4 -
 R/write_datasets.R                 |    2 
 data/background.rda                |binary
 data/benchmarks.rda                |binary
 data/dem.rda                       |binary
 data/gwl.rda                       |binary
 data/parameters.rda                |binary
 data/roads.rda                     |binary
 data/samples.rda                   |binary
 data/sites.rda                     |binary
 data/streams.rda                   |binary
 data/swm.rda                       |binary
 inst/tinytest/test_functions.R     |   28 +++++++++
 inst/tinytest/test_make_datasets.R |    4 -
 man/assert_url.Rd                  |    2 
 man/cities.Rd                      |    2 
 man/clean_sf.Rd                    |    3 -
 man/counties.Rd                    |    2 
 man/dem.Rd                         |    3 -
 man/esrp.Rd                        |    2 
 man/facilities.Rd                  |    2 
 man/idaho.Rd                       |    2 
 man/inl.Rd                         |    2 
 man/iwd.Rd                         |    2 
 man/lakes.Rd                       |    2 
 man/make_datasets.Rd               |    3 -
 man/make_dm.Rd                     |    3 -
 man/make_erd.Rd                    |    5 -
 man/make_shade.Rd                  |    4 -
 man/percponds.Rd                   |    2 
 man/roads.Rd                       |    2 
 man/sites.Rd                       |    2 
 man/streams.Rd                     |    2 
 55 files changed, 105 insertions(+), 154 deletions(-)

More information about inldata at CRAN
Permanent link

Package googleAuthR updated to version 2.0.2 with previous version 2.0.1 dated 2023-04-11

Title: Authenticate and Create Google APIs
Description: Create R functions that interact with OAuth2 Google APIs <https://developers.google.com/apis-explorer/> easily, with auto-refresh and Shiny compatibility.
Author: Mark Edmondson [aut] , Erik Groenroos [cre], Jennifer Bryan [ctb], Johann deBoer [ctb], Neal Richardson [ctb], David Kulp [ctb], Joe Cheng [ctb]
Maintainer: Erik Groenroos <erik.gronroos@8-bit-sheep.com>

Diff between googleAuthR versions 2.0.1 dated 2023-04-11 and 2.0.2 dated 2024-05-22

 DESCRIPTION                               |   22 -
 MD5                                       |   89 ++---
 NAMESPACE                                 |    1 
 NEWS.md                                   |    8 
 R/auth.R                                  |    8 
 R/auth_gargle.R                           |    5 
 R/checks.R                                |   42 ++
 R/debugging.R                             |    1 
 R/gce.R                                   |   13 
 R/generator.R                             |    2 
 R/googleAuthR.R                           |    4 
 R/options.R                               |    3 
 README.md                                 |    6 
 build/vignette.rds                        |binary
 inst/doc/advanced-building.html           |  453 +++++++++++++++---------------
 inst/doc/building.html                    |  440 ++++++++++++++---------------
 inst/doc/google-authentication-types.Rmd  |    4 
 inst/doc/google-authentication-types.html |  334 +++++++++++-----------
 inst/doc/setup.html                       |   10 
 inst/doc/troubleshooting.Rmd              |    2 
 inst/doc/troubleshooting.html             |   22 -
 man/doHttrRequest.Rd                      |    4 
 man/gar_attach_auto_auth.Rd               |    3 
 man/gar_auth.Rd                           |    3 
 man/gar_auth_configure.Rd                 |   20 -
 man/gar_auth_service.Rd                   |    1 
 man/gar_auto_auth.Rd                      |    3 
 man/gar_cache_setup.Rd                    |    6 
 man/gar_create_api_objects.Rd             |    4 
 man/gar_create_api_skeleton.Rd            |    4 
 man/gar_create_package.Rd                 |    4 
 man/gar_gce_auth.Rd                       |    3 
 man/gar_setup_auth_check.Rd               |    4 
 man/gar_setup_auth_key.Rd                 |    4 
 man/gar_setup_clientid.Rd                 |    4 
 man/gar_setup_edit_renviron.Rd            |    4 
 man/gar_setup_env_check.Rd                |    4 
 man/gar_shiny_login_ui.Rd                 |    2 
 man/gar_shiny_ui.Rd                       |    2 
 man/get_google_token.Rd                   |    6 
 man/googleAuthR.Rd                        |   28 +
 man/should_skip_token_checks.Rd           |only
 man/silent_auth.Rd                        |    2 
 man/token_exists.Rd                       |    5 
 vignettes/google-authentication-types.Rmd |    4 
 vignettes/troubleshooting.Rmd             |    2 
 46 files changed, 850 insertions(+), 745 deletions(-)

More information about googleAuthR at CRAN
Permanent link

Package jmvReadWrite updated to version 0.4.6 with previous version 0.4.5 dated 2024-04-04

Title: Read and Write 'jamovi' Files ('.omv')
Description: The free and open a statistical spreadsheet 'jamovi' (<https://www.jamovi.org>) aims to make statistical analyses easy and intuitive. 'jamovi' produces syntax that can directly be used in R (in connection with the R-package 'jmv'). Having import / export routines for the data files 'jamovi' produces ('.omv') permits an easy transfer of data and analyses between 'jamovi' and R.
Author: Sebastian Jentschke [aut, cre]
Maintainer: Sebastian Jentschke <sebastian.jentschke@uib.no>

Diff between jmvReadWrite versions 0.4.5 dated 2024-04-04 and 0.4.6 dated 2024-05-22

 DESCRIPTION                     |    6 +--
 MD5                             |   22 +++++------
 NEWS.md                         |   14 ++++++-
 R/globals.R                     |   19 ++-------
 R/replace_omv.R                 |   40 +++++++++++---------
 R/wide2long_omv.R               |    6 ---
 R/write_omv.R                   |   50 ++++++++++++++++---------
 README.md                       |   20 ++++++++--
 build/vignette.rds              |binary
 inst/CITATION                   |    2 -
 inst/doc/jmvReadWrite.html      |   78 ++++++++++++++++++++--------------------
 tests/testthat/test-write_omv.R |   36 +++++++++++++++++-
 12 files changed, 181 insertions(+), 112 deletions(-)

More information about jmvReadWrite at CRAN
Permanent link

Package crew updated to version 0.9.3 with previous version 0.9.2 dated 2024-04-24

Title: A Distributed Worker Launcher Framework
Description: In computationally demanding analysis projects, statisticians and data scientists asynchronously deploy long-running tasks to distributed systems, ranging from traditional clusters to cloud services. The 'NNG'-powered 'mirai' R package by Gao (2023) <doi:10.5281/zenodo.7912722> is a sleek and sophisticated scheduler that efficiently processes these intense workloads. The 'crew' package extends 'mirai' with a unifying interface for third-party worker launchers. Inspiration also comes from packages. 'future' by Bengtsson (2021) <doi:10.32614/RJ-2021-048>, 'rrq' by FitzJohn and Ashton (2023) <https://github.com/mrc-ide/rrq>, 'clustermq' by Schubert (2019) <doi:10.1093/bioinformatics/btz284>), and 'batchtools' by Lang, Bischel, and Surmann (2017) <doi:10.21105/joss.00135>.
Author: William Michael Landau [aut, cre] , Daniel Woodie [ctb], Eli Lilly and Company [cph]
Maintainer: William Michael Landau <will.landau.oss@gmail.com>

Diff between crew versions 0.9.2 dated 2024-04-24 and 0.9.3 dated 2024-05-22

 crew-0.9.2/crew/inst/doc/promises.R                      |only
 crew-0.9.3/crew/DESCRIPTION                              |    6 
 crew-0.9.3/crew/MD5                                      |   39 
 crew-0.9.3/crew/NAMESPACE                                |    1 
 crew-0.9.3/crew/NEWS.md                                  |    5 
 crew-0.9.3/crew/R/crew_controller.R                      |   23 
 crew-0.9.3/crew/R/crew_controller_group.R                |   23 
 crew-0.9.3/crew/R/crew_launcher.R                        |    4 
 crew-0.9.3/crew/R/crew_package.R                         |    2 
 crew-0.9.3/crew/build/vignette.rds                       |binary
 crew-0.9.3/crew/inst/doc/promises.Rmd                    |  175 ----
 crew-0.9.3/crew/inst/doc/promises.html                   |  268 ------
 crew-0.9.3/crew/inst/doc/shiny.Rmd                       |  294 ++++---
 crew-0.9.3/crew/inst/doc/shiny.html                      |  605 ++++++++-------
 crew-0.9.3/crew/tests/interactive/test-promises-groups.R |    8 
 crew-0.9.3/crew/tests/interactive/test-promises.R        |    8 
 crew-0.9.3/crew/tests/testthat/test-crew_monitor_local.R |    1 
 crew-0.9.3/crew/tests/testthat/test-plugins.R            |   13 
 crew-0.9.3/crew/vignettes/figures/coins.png              |binary
 crew-0.9.3/crew/vignettes/promises.Rmd                   |  175 ----
 crew-0.9.3/crew/vignettes/shiny.Rmd                      |  294 ++++---
 21 files changed, 771 insertions(+), 1173 deletions(-)

More information about crew at CRAN
Permanent link

Package resmush updated to version 0.1.1 with previous version 0.1.0 dated 2024-02-02

Title: Optimize and Compress Image Files with 'reSmush.it'
Description: Compress local and online images using the 'reSmush.it' API service <https://resmush.it/>.
Author: Diego Hernangomez [aut, cre, cph]
Maintainer: Diego Hernangomez <diego.hernangomezherrero@gmail.com>

Diff between resmush versions 0.1.0 dated 2024-02-02 and 0.1.1 dated 2024-05-22

 resmush-0.1.0/resmush/man/figures/sponsor.svg  |only
 resmush-0.1.0/resmush/vignettes/sponsor.svg    |only
 resmush-0.1.1/resmush/DESCRIPTION              |    9 
 resmush-0.1.1/resmush/MD5                      |   40 -
 resmush-0.1.1/resmush/NEWS.md                  |   37 +
 resmush-0.1.1/resmush/R/resmush_clean_dir.R    |  158 +++----
 resmush-0.1.1/resmush/R/resmush_dir.R          |    2 
 resmush-0.1.1/resmush/R/resmush_file.R         |  482 +++++++++++------------
 resmush-0.1.1/resmush/R/resmush_url.R          |  510 ++++++++++++-------------
 resmush-0.1.1/resmush/R/sysdata.rda            |binary
 resmush-0.1.1/resmush/README.md                |  109 +++--
 resmush-0.1.1/resmush/build/vignette.rds       |binary
 resmush-0.1.1/resmush/inst/REFERENCES.bib      |only
 resmush-0.1.1/resmush/inst/WORDLIST            |    5 
 resmush-0.1.1/resmush/inst/doc/resmush.Rmd     |   75 ++-
 resmush-0.1.1/resmush/inst/doc/resmush.html    |  212 +++++++++-
 resmush-0.1.1/resmush/inst/schemaorg.json      |   10 
 resmush-0.1.1/resmush/man/resmush_clean_dir.Rd |    2 
 resmush-0.1.1/resmush/man/resmush_dir.Rd       |    4 
 resmush-0.1.1/resmush/man/resmush_file.Rd      |    4 
 resmush-0.1.1/resmush/man/resmush_url.Rd       |    4 
 resmush-0.1.1/resmush/vignettes/REFERENCES.bib |only
 resmush-0.1.1/resmush/vignettes/resmush.Rmd    |   75 ++-
 23 files changed, 1002 insertions(+), 736 deletions(-)

More information about resmush at CRAN
Permanent link

Package ShortForm updated to version 0.5.4 with previous version 0.5.3 dated 2023-12-12

Title: Automatic Short Form Creation
Description: Performs automatic creation of short forms of scales with an ant colony optimization algorithm and a Tabu search. As implemented in the package, the ant colony algorithm randomly selects items to build a model of a specified length, then updates the probability of item selection according to the fit of the best model within each set of searches. The algorithm continues until the same items are selected by multiple ants a given number of times in a row. On the other hand, the Tabu search changes one parameter at a time to be either free, constrained, or fixed while keeping track of the changes made and putting changes that result in worse fit in a "tabu" list so that the algorithm does not revisit them for some number of searches. See Leite, Huang, & Marcoulides (2008) <doi:10.1080/00273170802285743> for an applied example of the ant colony algorithm, and Marcoulides & Falk (2018) <doi:10.1080/10705511.2017.1409074> for an applied example of the Tabu search.
Author: Anthony Raborn [aut, cre] , Walter Leite [aut]
Maintainer: Anthony Raborn <anthony.w.raborn@gmail.com>

Diff between ShortForm versions 0.5.3 dated 2023-12-12 and 0.5.4 dated 2024-05-22

 DESCRIPTION                       |   10 +++++-----
 MD5                               |   12 ++++++------
 NEWS.md                           |    5 +++++
 R/ShortForm.R                     |    1 -
 R/simulated_annealing_internals.R |    4 ++--
 build/partial.rdb                 |binary
 man/ShortForm.Rd                  |    1 -
 7 files changed, 18 insertions(+), 15 deletions(-)

More information about ShortForm at CRAN
Permanent link

Package escalation updated to version 0.1.9 with previous version 0.1.8 dated 2024-02-23

Title: A Modular Approach to Dose-Finding Clinical Trials
Description: Methods for working with dose-finding clinical trials. We provide implementations of many dose-finding clinical trial designs, including the continual reassessment method (CRM) by O'Quigley et al. (1990) <doi:10.2307/2531628>, the toxicity probability interval (TPI) design by Ji et al. (2007) <doi:10.1177/1740774507079442>, the modified TPI (mTPI) design by Ji et al. (2010) <doi:10.1177/1740774510382799>, the Bayesian optimal interval design (BOIN) by Liu & Yuan (2015) <doi:10.1111/rssc.12089>, EffTox by Thall & Cook (2004) <doi:10.1111/j.0006-341X.2004.00218.x>; the design of Wages & Tait (2015) <doi:10.1080/10543406.2014.920873>, and the 3+3 described by Korn et al. (1994) <doi:10.1002/sim.4780131802>. All designs are implemented with a common interface. We also offer optional additional classes to tailor the behaviour of all designs, including avoiding skipping doses, stopping after n patients have been treated at the recommended [...truncated...]
Author: Kristian Brock [aut, cre] , Daniel Slade [aut] , Michael Sweeting [aut]
Maintainer: Kristian Brock <kristian.brock@gmail.com>

Diff between escalation versions 0.1.8 dated 2024-02-23 and 0.1.9 dated 2024-05-22

 escalation-0.1.8/escalation/man/as_tibble.derived_dose_selector.Rd         |only
 escalation-0.1.9/escalation/DESCRIPTION                                    |   15 
 escalation-0.1.9/escalation/MD5                                            |  119 +--
 escalation-0.1.9/escalation/NAMESPACE                                      |   28 
 escalation-0.1.9/escalation/R/check_dose_selector_consistency.R            |only
 escalation-0.1.9/escalation/R/correlated_patient_sample.R                  |    4 
 escalation-0.1.9/escalation/R/derived_dose_selector.R                      |   19 
 escalation-0.1.9/escalation/R/dont_skip_doses.R                            |   15 
 escalation-0.1.9/escalation/R/dose_selector_summary_methods.R              |only
 escalation-0.1.9/escalation/R/follow_path.R                                |    8 
 escalation-0.1.9/escalation/R/patient_sample.R                             |    4 
 escalation-0.1.9/escalation/R/select_boin_mtd.R                            |   15 
 escalation-0.1.9/escalation/R/select_dose_by_cibp.R                        |   15 
 escalation-0.1.9/escalation/R/select_mtpi2_mtd.R                           |   15 
 escalation-0.1.9/escalation/R/select_mtpi_mtd.R                            |   15 
 escalation-0.1.9/escalation/R/select_tpi_mtd.R                             |   16 
 escalation-0.1.9/escalation/R/selector.R                                   |  199 ++---
 escalation-0.1.9/escalation/R/simulate_compare.R                           |    6 
 escalation-0.1.9/escalation/R/simulations_collection.R                     |   19 
 escalation-0.1.9/escalation/R/stack_sims_vert.R                            |    2 
 escalation-0.1.9/escalation/R/stop_when_too_toxic.R                        |   16 
 escalation-0.1.9/escalation/R/try_rescue_dose.R                            |   15 
 escalation-0.1.9/escalation/inst/doc/A205-CRM.html                         |   48 -
 escalation-0.1.9/escalation/inst/doc/A207-NBG.html                         |    8 
 escalation-0.1.9/escalation/inst/doc/A210-TPI.html                         |    4 
 escalation-0.1.9/escalation/inst/doc/A220-mTPI.html                        |    4 
 escalation-0.1.9/escalation/inst/doc/A230-BOIN.html                        |    4 
 escalation-0.1.9/escalation/inst/doc/A600-DosePaths.html                   |   36 -
 escalation-0.1.9/escalation/inst/doc/A710-SimulationComparison.R           |    3 
 escalation-0.1.9/escalation/inst/doc/A710-SimulationComparison.Rmd         |    8 
 escalation-0.1.9/escalation/inst/doc/A710-SimulationComparison.html        |  356 +++++-----
 escalation-0.1.9/escalation/man/CorrelatedPatientSample.Rd                 |    4 
 escalation-0.1.9/escalation/man/PatientSample.Rd                           |    4 
 escalation-0.1.9/escalation/man/as_tibble.selector.Rd                      |only
 escalation-0.1.9/escalation/man/check_dose_selector_consistency.Rd         |only
 escalation-0.1.9/escalation/man/simulate_compare.Rd                        |    6 
 escalation-0.1.9/escalation/man/simulations_collection.Rd                  |    4 
 escalation-0.1.9/escalation/man/stack_sims_vert.Rd                         |    2 
 escalation-0.1.9/escalation/tests/testthat/test_boin.R                     |   13 
 escalation-0.1.9/escalation/tests/testthat/test_boin12.R                   |   11 
 escalation-0.1.9/escalation/tests/testthat/test_demand_n_at_dose.R         |   10 
 escalation-0.1.9/escalation/tests/testthat/test_dfcrm.R                    |    3 
 escalation-0.1.9/escalation/tests/testthat/test_dont_skip_doses.R          |    9 
 escalation-0.1.9/escalation/tests/testthat/test_follow_path.R              |    4 
 escalation-0.1.9/escalation/tests/testthat/test_mtpi.R                     |  195 +++++
 escalation-0.1.9/escalation/tests/testthat/test_mtpi2.R                    |  102 ++
 escalation-0.1.9/escalation/tests/testthat/test_select_boin_mtd.R          |    4 
 escalation-0.1.9/escalation/tests/testthat/test_select_dose_by_cibp.R      |    1 
 escalation-0.1.9/escalation/tests/testthat/test_select_mtpi2_mtd.R         |    4 
 escalation-0.1.9/escalation/tests/testthat/test_select_mtpi_mtd.R          |    4 
 escalation-0.1.9/escalation/tests/testthat/test_select_tpi_mtd.R           |    4 
 escalation-0.1.9/escalation/tests/testthat/test_stop_at_n.R                |    2 
 escalation-0.1.9/escalation/tests/testthat/test_stop_when_n_at_dose.R      |    8 
 escalation-0.1.9/escalation/tests/testthat/test_stop_when_too_toxic.R      |    3 
 escalation-0.1.9/escalation/tests/testthat/test_stop_when_tox_ci_covered.R |    6 
 escalation-0.1.9/escalation/tests/testthat/test_three_plus_three.R         |   54 +
 escalation-0.1.9/escalation/tests/testthat/test_tpi.R                      |  108 ++-
 escalation-0.1.9/escalation/tests/testthat/test_trialr_crm.R               |    5 
 escalation-0.1.9/escalation/tests/testthat/test_trialr_efftox.R            |    3 
 escalation-0.1.9/escalation/tests/testthat/test_trialr_nbg.R               |    2 
 escalation-0.1.9/escalation/tests/testthat/test_try_rescue_dose.R          |    4 
 escalation-0.1.9/escalation/vignettes/A710-SimulationComparison.Rmd        |    8 
 escalation-0.1.9/escalation/vignettes/library.bib                          |    4 
 63 files changed, 1168 insertions(+), 439 deletions(-)

More information about escalation at CRAN
Permanent link

Package partition updated to version 0.2.1 with previous version 0.2.0 dated 2024-01-24

Title: Agglomerative Partitioning Framework for Dimension Reduction
Description: A fast and flexible framework for agglomerative partitioning. 'partition' uses an approach called Direct-Measure-Reduce to create new variables that maintain the user-specified minimum level of information. Each reduced variable is also interpretable: the original variables map to one and only one variable in the reduced data set. 'partition' is flexible, as well: how variables are selected to reduce, how information loss is measured, and the way data is reduced can all be customized. 'partition' is based on the Partition framework discussed in Millstein et al. (2020) <doi:10.1093/bioinformatics/btz661>.
Author: Joshua Millstein [aut], Malcolm Barrett [aut, cre] , Katelyn Queen [aut]
Maintainer: Malcolm Barrett <malcolmbarrett@gmail.com>

Diff between partition versions 0.2.0 dated 2024-01-24 and 0.2.1 dated 2024-05-22

 DESCRIPTION                                   |    6 ++---
 MD5                                           |   26 ++++++++++++-------------
 NEWS.md                                       |    3 ++
 R/super_partition.R                           |    6 +++--
 inst/doc/extending-partition.R                |    8 ++++++-
 inst/doc/extending-partition.Rmd              |    8 ++++++-
 inst/doc/extending-partition.html             |   16 +++++++++++++--
 inst/doc/introduction-to-partition.R          |    8 ++++++-
 inst/doc/introduction-to-partition.Rmd        |    8 ++++++-
 inst/doc/introduction-to-partition.html       |   27 ++++++++++++++++++--------
 man/figures/README-secret_benchmarks1-1.png   |binary
 tests/testthat/test-super-partition-objects.R |    2 -
 vignettes/extending-partition.Rmd             |    8 ++++++-
 vignettes/introduction-to-partition.Rmd       |    8 ++++++-
 14 files changed, 99 insertions(+), 35 deletions(-)

More information about partition at CRAN
Permanent link

Package terra updated to version 1.7-78 with previous version 1.7-71 dated 2024-01-31

Title: Spatial Data Analysis
Description: Methods for spatial data analysis with vector (points, lines, polygons) and raster (grid) data. Methods for vector data include geometric operations such as intersect and buffer. Raster methods include local, focal, global, zonal and geometric operations. The predict and interpolate methods facilitate the use of regression type (interpolation, machine learning) models for spatial prediction, including with satellite remote sensing data. Processing of very large files is supported. See the manual and tutorials on <https://rspatial.org/> to get started. 'terra' replaces the 'raster' package ('terra' can do more, and it is faster and easier to use).
Author: Robert J. Hijmans [cre, aut] , Roger Bivand [ctb] , Krzysztof Dyba [ctb] , Edzer Pebesma [ctb] , Michael D. Sumner [ctb]
Maintainer: Robert J. Hijmans <r.hijmans@gmail.com>

Diff between terra versions 1.7-71 dated 2024-01-31 and 1.7-78 dated 2024-05-22

 DESCRIPTION              |   10 +
 MD5                      |  242 +++++++++++++++++++++++------------------------
 NAMESPACE                |    4 
 NEWS.md                  |   50 ++++++++-
 R/Aclasses.R             |   56 +++++-----
 R/Agenerics.R            |    1 
 R/Arith_generics.R       |  114 +++++++++++-----------
 R/RGB.R                  |   24 ++--
 R/SpatRasterDataset.R    |   72 ++++++-------
 R/SpatVectorCollection.R |   34 +++---
 R/aggregate.R            |   14 +-
 R/app.R                  |    4 
 R/cells.R                |   23 +++-
 R/coerce.R               |   99 +++++++++++++------
 R/colors.R               |   16 +--
 R/crs.R                  |   48 ++++-----
 R/dimensions.R           |   34 +++---
 R/distance.R             |   84 ++++++++++++----
 R/expand.R               |   30 ++---
 R/extent.R               |   50 ++++-----
 R/extract.R              |   27 ++---
 R/extract_single.R       |    4 
 R/focal.R                |   28 +++--
 R/gdal.R                 |   14 +-
 R/generics.R             |  209 +++++++++++++++++++++-------------------
 R/geom.R                 |  117 ++++++++++++----------
 R/graticule.R            |   34 +++---
 R/init.R                 |    6 -
 R/inset.R                |   69 +++++++------
 R/layerCor.R             |    2 
 R/levels.R               |   42 ++++----
 R/lines.R                |    6 -
 R/match.R                |    2 
 R/math.R                 |   30 ++---
 R/merge.R                |    8 -
 R/messages.R             |   14 +-
 R/names.R                |   64 ++++++------
 R/ncdf.R                 |   10 -
 R/options.R              |   12 +-
 R/plot.R                 |   10 +
 R/plot_legend.R          |   32 +++++-
 R/plot_let.R             |   19 ++-
 R/plot_raster.R          |   50 ++++++---
 R/plot_vector.R          |   34 ++++--
 R/rapp.R                 |    6 -
 R/rast.R                 |   66 ++++++++++--
 R/rasterize.R            |   29 +++--
 R/rasterizeWin.R         |   14 +-
 R/read.R                 |   10 -
 R/relate.R               |   40 +++----
 R/replace.R              |   12 +-
 R/replace_values.R       |   12 +-
 R/roll.R                 |    2 
 R/sample.R               |   22 ++--
 R/show.R                 |   33 +++---
 R/spatvec.R              |   60 +++++------
 R/subset.R               |   16 +--
 R/tags.R                 |   14 +-
 R/tapp.R                 |    4 
 R/tiles.R                |   14 +-
 R/time.R                 |   46 ++++----
 R/update.R               |    2 
 R/values.R               |   86 ++++++++--------
 R/vect.R                 |   62 ++++++------
 R/window.R               |    6 -
 R/wrap.R                 |   10 -
 R/write.R                |   32 +++---
 R/xyRowColCell.R         |   32 +++---
 R/zonal.R                |   38 +++----
 man/as.list.Rd           |    6 -
 man/as.raster.Rd         |    2 
 man/barplot.Rd           |    2 
 man/bestMatch.Rd         |only
 man/box.Rd               |    4 
 man/cells.Rd             |    7 -
 man/click.Rd             |   10 -
 man/contour.Rd           |    2 
 man/costDist.Rd          |    6 -
 man/crs.Rd               |    4 
 man/distance.Rd          |    8 -
 man/draw.Rd              |    4 
 man/expanse.Rd           |    6 -
 man/extract.Rd           |    3 
 man/freq.Rd              |    2 
 man/grid.Rd              |only
 man/init.Rd              |    4 
 man/inset.Rd             |    7 -
 man/interpolate.Rd       |    6 -
 man/legend.Rd            |    3 
 man/makeTiles.Rd         |    2 
 man/mask.Rd              |   11 +-
 man/plet.Rd              |   15 +-
 man/plot.Rd              |   10 -
 man/princomp.Rd          |    2 
 man/project.Rd           |    4 
 man/rangeFill.Rd         |    6 -
 man/relate.Rd            |    2 
 man/sample.Rd            |    2 
 man/terra-package.Rd     |    2 
 man/terrain.Rd           |    4 
 man/vect.Rd              |    6 -
 man/zonal.Rd             |    6 -
 src/Makevars.ucrt        |   11 +-
 src/RcppFunctions.cpp    |   12 +-
 src/RcppModule.cpp       |    1 
 src/distRaster.cpp       |   24 ++--
 src/extract.cpp          |   16 +--
 src/gdal_algs.cpp        |   91 +++++++++++++++++
 src/geos_methods.cpp     |   31 +++++-
 src/raster_methods.cpp   |   63 ++++++++----
 src/raster_stats.cpp     |   16 +--
 src/rasterize.cpp        |   35 +++---
 src/read_gdal.cpp        |   21 ++++
 src/read_ogr.cpp         |   96 ++++++++++++------
 src/spatBase.cpp         |    2 
 src/spatRaster.cpp       |   25 ++++
 src/spatRaster.h         |   24 ++--
 src/spatRasterMultiple.h |    2 
 src/spatVector.h         |    4 
 src/vecmathse.cpp        |    6 -
 src/vector_methods.cpp   |    1 
 src/write_gdal.cpp       |    7 +
 src/write_ogr.cpp        |   51 ++++++---
 123 files changed, 1884 insertions(+), 1333 deletions(-)

More information about terra at CRAN
Permanent link

Package praatpicture updated to version 1.2.0 with previous version 1.0.0 dated 2024-03-07

Title: 'Praat Picture' Style Plots of Acoustic Data
Description: Quickly and easily generate plots of acoustic data aligned with transcriptions similar to those made in 'Praat' using either derived signals generated directly in R with 'wrassp' or imported derived signals from 'Praat'. Provides easy and fast out-of-the-box solutions but also a high extent of flexibility. Also provides options for embedding audio in figures and animating figures.
Author: Rasmus Puggaard-Rode [aut, cre, cph]
Maintainer: Rasmus Puggaard-Rode <r.puggaard@phonetik.uni-muenchen.de>

Diff between praatpicture versions 1.0.0 dated 2024-03-07 and 1.2.0 dated 2024-05-22

 DESCRIPTION                               |   15 
 LICENSE                                   |    4 
 MD5                                       |  125 +-
 NAMESPACE                                 |    2 
 NEWS.md                                   |   59 +
 R/conv2sc.R                               |   88 -
 R/draw_arrow.R                            |   58 -
 R/draw_lines.R                            |only
 R/draw_rectangle.R                        |   56 -
 R/emupicture.R                            |  164 +--
 R/formantplot.R                           |   58 -
 R/intensityplot.R                         |  166 +--
 R/make_annot.R                            |    4 
 R/pitchplot.R                             |   39 
 R/praatanimation.R                        |  562 ++++++------
 R/praatpicture.R                          | 1329 +++++++++++++++---------------
 R/shiny_praatpicture.R                    |only
 R/specplot.R                              |   83 +
 R/talking_praatpicture.R                  |  174 +--
 R/tg_createTier.R                         |  208 ++--
 R/tg_stylize.R                            |  232 ++---
 R/tgplot.R                                |  196 ++--
 R/waveplot.R                              |   47 -
 README.md                                 |  500 -----------
 inst/CITATION                             |only
 inst/shiny                                |only
 man/draw_lines.Rd                         |only
 man/figures/README-unnamed-chunk-10-1.png |binary
 man/figures/README-unnamed-chunk-11-1.png |binary
 man/figures/README-unnamed-chunk-12-1.png |binary
 man/figures/README-unnamed-chunk-13-1.png |binary
 man/figures/README-unnamed-chunk-14-1.png |binary
 man/figures/README-unnamed-chunk-15-1.png |binary
 man/figures/README-unnamed-chunk-16-1.png |binary
 man/figures/README-unnamed-chunk-17-1.png |binary
 man/figures/README-unnamed-chunk-18-1.png |binary
 man/figures/README-unnamed-chunk-20-1.png |binary
 man/figures/README-unnamed-chunk-21-1.png |binary
 man/figures/README-unnamed-chunk-22-1.png |binary
 man/figures/README-unnamed-chunk-23-1.png |binary
 man/figures/README-unnamed-chunk-24-1.png |binary
 man/figures/README-unnamed-chunk-25-1.png |binary
 man/figures/README-unnamed-chunk-26-1.png |binary
 man/figures/README-unnamed-chunk-27-1.png |binary
 man/figures/README-unnamed-chunk-28-1.png |binary
 man/figures/README-unnamed-chunk-29-1.png |binary
 man/figures/README-unnamed-chunk-30-1.png |binary
 man/figures/README-unnamed-chunk-31-1.png |binary
 man/figures/README-unnamed-chunk-32-1.png |binary
 man/figures/README-unnamed-chunk-33-1.png |only
 man/figures/README-unnamed-chunk-36-1.png |binary
 man/figures/README-unnamed-chunk-38-1.png |only
 man/figures/README-unnamed-chunk-5-1.png  |binary
 man/figures/README-unnamed-chunk-6-1.png  |binary
 man/figures/README-unnamed-chunk-7-1.png  |binary
 man/figures/README-unnamed-chunk-8-1.png  |binary
 man/figures/README-unnamed-chunk-9-1.png  |binary
 man/formantplot.Rd                        |    7 
 man/make_TextGrid.Rd                      |  164 +--
 man/make_annot.Rd                         |   62 -
 man/pitchplot.Rd                          |    4 
 man/praatpicture.Rd                       |   58 -
 man/shiny_praatpicture.Rd                 |only
 man/specplot.Rd                           |   25 
 man/tg_createTier.Rd                      |  112 +-
 man/tg_stylize.Rd                         |    2 
 man/waveplot.Rd                           |   11 
 67 files changed, 2182 insertions(+), 2432 deletions(-)

More information about praatpicture at CRAN
Permanent link

Package FAOSTAT updated to version 2.4.0 with previous version 2.3.1 dated 2024-05-02

Title: Download Data from the FAOSTAT Database
Description: Download Data from the FAOSTAT Database of the Food and Agricultural Organization (FAO) of the United Nations. A list of functions to download statistics from FAOSTAT (database of the FAO <https://www.fao.org/faostat/>) and WDI (database of the World Bank <https://data.worldbank.org/>), and to perform some harmonization operations.
Author: Michael C. J., Markus Gesmann, Filippo Gheri, Paul Rougieux <paul.rougieux@gmail.com>, Sebastian Campbell
Maintainer: Paul Rougieux <paul.rougieux@gmail.com>

Diff between FAOSTAT versions 2.3.1 dated 2024-05-02 and 2.4.0 dated 2024-05-22

 DESCRIPTION          |    8 ++++----
 MD5                  |    8 ++++----
 R/rest.R             |    4 ++--
 inst/doc/FAOSTAT.pdf |binary
 man/get_fao.Rd       |    4 ++--
 5 files changed, 12 insertions(+), 12 deletions(-)

More information about FAOSTAT at CRAN
Permanent link

Package shorts updated to version 3.2.0 with previous version 3.1.1 dated 2024-05-02

Title: Short Sprints
Description: Create short sprint acceleration-velocity (AVP) and force-velocity (FVP) profiles and predict kinematic and kinetic variables using the timing-gate split times, laser or radar gun data, tether devices data, as well as the data provided by the GPS and LPS monitoring systems. The modeling method utilized in this package is based on the works of Furusawa K, Hill AV, Parkinson JL (1927) <doi: 10.1098/rspb.1927.0035>, Greene PR. (1986) <doi: 10.1016/0025-5564(86)90063-5>, Chelly SM, Denis C. (2001) <doi: 10.1097/00005768-200102000-00024>, Clark KP, Rieger RH, Bruno RF, Stearne DJ. (2017) <doi: 10.1519/JSC.0000000000002081>, Samozino P. (2018) <doi: 10.1007/978-3-319-05633-3_11>, Samozino P. and Peyrot N., et al (2022) <doi: 10.1111/sms.14097>, Clavel, P., et al (2023) <doi: 10.1016/j.jbiomech.2023.111602>, Jovanovic M. (2023) <doi: 10.1080/10255842.2023.2170713>, and Jovanovic M., et al (2024) <doi: 10.3390/s24092894>.
Author: Mladen Jovanovic [aut, cre, cph]
Maintainer: Mladen Jovanovic <coach.mladen.jovanovic@gmail.com>

Diff between shorts versions 3.1.1 dated 2024-05-02 and 3.2.0 dated 2024-05-22

 DESCRIPTION             |    6 +-
 MD5                     |   18 +++----
 NAMESPACE               |    2 
 NEWS.md                 |    5 ++
 R/model-time-distance.R |  110 +++++++++++++++++++++++++++++++++++++++++-------
 R/model-timing-gates.R  |  110 +++++++++++++++++++++++++++++++++++++++++-------
 R/predict-functions.R   |    2 
 README.md               |    4 -
 inst/CITATION           |    2 
 man/model_functions.Rd  |   54 ++++++++++++++++++++---
 10 files changed, 261 insertions(+), 52 deletions(-)

More information about shorts at CRAN
Permanent link

Package plsVarSel updated to version 0.9.12 with previous version 0.9.11 dated 2024-04-22

Title: Variable Selection in Partial Least Squares
Description: Interfaces and methods for variable selection in Partial Least Squares. The methods include filter methods, wrapper methods and embedded methods. Both regression and classification is supported.
Author: Kristian Hovde Liland [aut, cre] , Tahir Mehmood [ctb], Solve Saeboe [ctb]
Maintainer: Kristian Hovde Liland <kristian.liland@nmbu.no>

Diff between plsVarSel versions 0.9.11 dated 2024-04-22 and 0.9.12 dated 2024-05-22

 DESCRIPTION             |    8 ++++----
 MD5                     |   14 +++++++-------
 NEWS                    |    4 ++++
 R/T2.R                  |    5 ++---
 R/utilities.R           |    8 ++++----
 man/T2_pls.Rd           |    5 ++---
 man/myImagePlot.Rd      |    4 ++--
 man/simulate_classes.Rd |    4 ++--
 8 files changed, 27 insertions(+), 25 deletions(-)

More information about plsVarSel at CRAN
Permanent link

Package boiwsa updated to version 1.1.0 with previous version 1.0.0 dated 2023-10-12

Title: Seasonal Adjustment of Weekly Data
Description: Perform seasonal adjustment of weekly data. The package offers a user-friendly interface for computing seasonally adjusted estimates of weekly data and also includes diagnostic tools to assess the quality of the adjustments. Furthermore, it incorporates tools uniquely tailored to the specific characteristics of Israeli data. The method is described in more detail in Ginker (2023) <doi:10.13140/RG.2.2.12221.44000>.
Author: Tim Ginker [aut, cre, cph]
Maintainer: Tim Ginker <tim.ginker@gmail.com>

Diff between boiwsa versions 1.0.0 dated 2023-10-12 and 1.1.0 dated 2024-05-22

 DESCRIPTION                              |   10 -
 MD5                                      |   16 +--
 NAMESPACE                                |    1 
 NEWS.md                                  |   12 ++
 R/boiwsa.R                               |   10 +
 R/find_outliers.R                        |  160 ++++++++++++++++++++++---------
 R/plot_spec.R                            |   31 +++---
 README.md                                |  109 ++++++++++++++-------
 man/figures/README-unnamed-chunk-6-1.png |binary
 9 files changed, 236 insertions(+), 113 deletions(-)

More information about boiwsa at CRAN
Permanent link

Package xxdi updated to version 1.0.0 with previous version 0.0.1 dated 2024-05-15

Title: Calculate Expertise Indices
Description: Institutional performance assessment remains a key challenge to a multitude of stakeholders. Existing indicators such as h-type indicators, g-type indicators, and many others do not reflect expertise of institutions that defines their research portfolio. The package offers functionality to compute and visualise two novel indices: the x-index and the xd-index. The x-index evaluates an institution's scholarly expertise within a specific discipline or field, while the xd-index provides a broader assessment of overall scholarly expertise considering an institution's publication pattern and strengths across coarse thematic areas. These indices offer a nuanced understanding of institutional research capabilities, aiding stakeholders in research management and resource allocation decisions. Lathabai, H.H., Nandy, A., and Singh, V.K. (2021) <doi:10.1007/s11192-021-04188-3>. Nandy, A., Lathabai, H.H., and Singh, V.K. (2023) <doi:10.5281/zenodo.8305585>.
Author: Nilabhra Rohan Das [cre, aut] , Abhirup Nandy [aut]
Maintainer: Nilabhra Rohan Das <nr.das@yahoo.com>

Diff between xxdi versions 0.0.1 dated 2024-05-15 and 1.0.0 dated 2024-05-22

 DESCRIPTION     |   22 ++++++++--------
 MD5             |   14 +++++-----
 NAMESPACE       |    9 ++++++
 NEWS.md         |    7 +++++
 R/x_index.R     |   67 +++++++++++++++++++++++++++++++++++++++------------
 R/xd_index.R    |   73 +++++++++++++++++++++++++++++++++++++++++---------------
 man/x_index.Rd  |   24 +++++++++---------
 man/xd_index.Rd |   24 +++++++++---------
 8 files changed, 165 insertions(+), 75 deletions(-)

More information about xxdi at CRAN
Permanent link

Package tf updated to version 0.3.4 with previous version 0.3.3 dated 2024-03-28

Title: S3 Classes and Methods for Tidy Functional Data
Description: Defines S3 vector data types for vectors of functional data (grid-based, spline-based or functional principal components-based) with all arithmetic and summary methods, derivation, integration and smoothing, plotting, data import and export, and data wrangling, such as re-evaluating, subsetting, sub-assigning, zooming into sub-domains, or extracting functional features like minima/maxima and their locations. The implementation allows including such vectors in data frames for joint analysis of functional and scalar variables.
Author: Fabian Scheipl [aut, cre] , Jeff Goldsmith [aut], Julia Wrobel [ctb] , Maximilian Muecke [ctb] , Sebastian Fischer [ctb] , Trevor Hastie [ctb] , Rahul Mazumder [ctb] , Chen Meng [ctb]
Maintainer: Fabian Scheipl <fabian.scheipl@googlemail.com>

Diff between tf versions 0.3.3 dated 2024-03-28 and 0.3.4 dated 2024-05-22

 DESCRIPTION                 |    6 +++---
 MD5                         |   10 +++++-----
 NEWS.md                     |    4 ++++
 R/fwise.R                   |    2 +-
 README.md                   |    2 +-
 tests/testthat/test-fwise.R |    3 ++-
 6 files changed, 16 insertions(+), 11 deletions(-)

More information about tf at CRAN
Permanent link

Package oeli updated to version 0.5.0 with previous version 0.4.1 dated 2024-02-24

Title: My Utilities for Developing Data Science Software
Description: Some general helper functions that I and maybe others find useful when developing data science software. Functionality includes argument validation, density calculation, sampling, matrix printing, user interaction, storage helpers and more. The vignettes illustrate use cases.
Author: Lennart Oelschlaeger [aut, cre]
Maintainer: Lennart Oelschlaeger <oelschlaeger.lennart@gmail.com>

Diff between oeli versions 0.4.1 dated 2024-02-24 and 0.5.0 dated 2024-05-22

 oeli-0.4.1/oeli/man/basic_package_sticker.Rd                              |only
 oeli-0.5.0/oeli/DESCRIPTION                                               |    8 
 oeli-0.5.0/oeli/MD5                                                       |  256 +-
 oeli-0.5.0/oeli/NAMESPACE                                                 |  174 -
 oeli-0.5.0/oeli/NEWS.md                                                   |  212 -
 oeli-0.5.0/oeli/R/RcppExports.R                                           |  434 +--
 oeli-0.5.0/oeli/R/calculate_density.R                                     |  120 -
 oeli-0.5.0/oeli/R/catch-routine-registration.R                            |   14 
 oeli-0.5.0/oeli/R/catching_exceptions.R                                   |   66 
 oeli-0.5.0/oeli/R/check_correlation_matrix.R                              |  136 -
 oeli-0.5.0/oeli/R/check_covariance_matrix.R                               |  130 -
 oeli-0.5.0/oeli/R/check_list_of_lists.R                                   |   92 
 oeli-0.5.0/oeli/R/check_numeric_vector.R                                  |  119 -
 oeli-0.5.0/oeli/R/check_probability_vector.R                              |  104 
 oeli-0.5.0/oeli/R/check_transition_probability_matrix.R                   |  130 -
 oeli-0.5.0/oeli/R/cholesky_root.R                                         |  142 -
 oeli-0.5.0/oeli/R/chunk_vector.R                                          |only
 oeli-0.5.0/oeli/R/covariance_differencing.R                               |  166 -
 oeli-0.5.0/oeli/R/date_helpers.R                                          |  102 
 oeli-0.5.0/oeli/R/delete_data_frame_columns.R                             |   54 
 oeli-0.5.0/oeli/R/dictionary_helpers.R                                    |  500 ++--
 oeli-0.5.0/oeli/R/function_helpers.R                                      |  286 +-
 oeli-0.5.0/oeli/R/group_data_frame.R                                      |   66 
 oeli-0.5.0/oeli/R/index_helpers.R                                         |  174 -
 oeli-0.5.0/oeli/R/insert_matrix_column.R                                  |only
 oeli-0.5.0/oeli/R/insert_vector_entry.R                                   |only
 oeli-0.5.0/oeli/R/list_helpers.R                                          |   62 
 oeli-0.5.0/oeli/R/markov_chain.R                                          |  150 -
 oeli-0.5.0/oeli/R/match_arg.R                                             |  122 -
 oeli-0.5.0/oeli/R/matrix_diagonal_indices.R                               |only
 oeli-0.5.0/oeli/R/matrix_indices.R                                        |   74 
 oeli-0.5.0/oeli/R/oeli-package.R                                          |   57 
 oeli-0.5.0/oeli/R/package_helpers.R                                       |  380 +--
 oeli-0.5.0/oeli/R/package_logo.R                                          |only
 oeli-0.5.0/oeli/R/print_matrix.R                                          |  316 +-
 oeli-0.5.0/oeli/R/sample_things.R                                         |  304 +-
 oeli-0.5.0/oeli/R/storage_helpers.R                                       | 1190 +++++-----
 oeli-0.5.0/oeli/R/subsets.R                                               |only
 oeli-0.5.0/oeli/R/timed_evaluation.R                                      |  192 -
 oeli-0.5.0/oeli/R/user_confirm.R                                          |   88 
 oeli-0.5.0/oeli/README.md                                                 |   92 
 oeli-0.5.0/oeli/build/vignette.rds                                        |binary
 oeli-0.5.0/oeli/inst/doc/argument_validation.R                            |   72 
 oeli-0.5.0/oeli/inst/doc/argument_validation.Rmd                          |  122 -
 oeli-0.5.0/oeli/inst/doc/argument_validation.html                         |  798 +++---
 oeli-0.5.0/oeli/inst/doc/data_frame_helpers.R                             |   36 
 oeli-0.5.0/oeli/inst/doc/data_frame_helpers.Rmd                           |   66 
 oeli-0.5.0/oeli/inst/doc/data_frame_helpers.html                          |  852 +++----
 oeli-0.5.0/oeli/inst/doc/matrix_helpers.R                                 |   52 
 oeli-0.5.0/oeli/inst/doc/matrix_helpers.Rmd                               |   96 
 oeli-0.5.0/oeli/inst/doc/matrix_helpers.html                              |  839 +++----
 oeli-0.5.0/oeli/inst/doc/package_helpers.R                                |only
 oeli-0.5.0/oeli/inst/doc/package_helpers.Rmd                              |only
 oeli-0.5.0/oeli/inst/doc/package_helpers.html                             |only
 oeli-0.5.0/oeli/inst/doc/storage_helpers.R                                |   68 
 oeli-0.5.0/oeli/inst/doc/storage_helpers.Rmd                              |   94 
 oeli-0.5.0/oeli/inst/doc/storage_helpers.html                             |  906 +++----
 oeli-0.5.0/oeli/inst/doc/vector_helpers.R                                 |only
 oeli-0.5.0/oeli/inst/doc/vector_helpers.Rmd                               |only
 oeli-0.5.0/oeli/inst/doc/vector_helpers.html                              |only
 oeli-0.5.0/oeli/man/Dictionary.Rd                                         |  330 +-
 oeli-0.5.0/oeli/man/check_correlation_matrix.Rd                           |   82 
 oeli-0.5.0/oeli/man/check_covariance_matrix.Rd                            |   82 
 oeli-0.5.0/oeli/man/check_date.Rd                                         |   44 
 oeli-0.5.0/oeli/man/check_list_of_lists.Rd                                |   76 
 oeli-0.5.0/oeli/man/check_probability_vector.Rd                           |   84 
 oeli-0.5.0/oeli/man/check_transition_probability_matrix.Rd                |   98 
 oeli-0.5.0/oeli/man/chunk_vector.Rd                                       |only
 oeli-0.5.0/oeli/man/cov_2_chol.Rd                                         |   74 
 oeli-0.5.0/oeli/man/ddirichlet.Rd                                         |   64 
 oeli-0.5.0/oeli/man/ddirichlet_cpp.Rd                                     |   60 
 oeli-0.5.0/oeli/man/diff_cov.Rd                                           |  124 -
 oeli-0.5.0/oeli/man/dmvnorm.Rd                                            |   66 
 oeli-0.5.0/oeli/man/dmvnorm_cpp.Rd                                        |   60 
 oeli-0.5.0/oeli/man/do.call_timed.Rd                                      |   72 
 oeli-0.5.0/oeli/man/dwishart.Rd                                           |   80 
 oeli-0.5.0/oeli/man/dwishart_cpp.Rd                                       |   72 
 oeli-0.5.0/oeli/man/find_closest_year.Rd                                  |   42 
 oeli-0.5.0/oeli/man/function_arguments.Rd                                 |   60 
 oeli-0.5.0/oeli/man/function_body.Rd                                      |   62 
 oeli-0.5.0/oeli/man/function_defaults.Rd                                  |   52 
 oeli-0.5.0/oeli/man/insert_matrix_column.Rd                               |only
 oeli-0.5.0/oeli/man/insert_vector_entry.Rd                                |only
 oeli-0.5.0/oeli/man/match_numerics.Rd                                     |   54 
 oeli-0.5.0/oeli/man/matrix_diagonal_indices.Rd                            |only
 oeli-0.5.0/oeli/man/matrix_indices.Rd                                     |   58 
 oeli-0.5.0/oeli/man/merge_lists.Rd                                        |   46 
 oeli-0.5.0/oeli/man/oeli-package.Rd                                       |   52 
 oeli-0.5.0/oeli/man/package_logo.Rd                                       |only
 oeli-0.5.0/oeli/man/permutations.Rd                                       |   50 
 oeli-0.5.0/oeli/man/print_matrix.Rd                                       |  118 
 oeli-0.5.0/oeli/man/rdirichlet.Rd                                         |   50 
 oeli-0.5.0/oeli/man/rdirichlet_cpp.Rd                                     |   44 
 oeli-0.5.0/oeli/man/rmvnorm.Rd                                            |   66 
 oeli-0.5.0/oeli/man/rmvnorm_cpp.Rd                                        |   70 
 oeli-0.5.0/oeli/man/rtnorm_cpp.Rd                                         |   84 
 oeli-0.5.0/oeli/man/rwishart.Rd                                           |   64 
 oeli-0.5.0/oeli/man/rwishart_cpp.Rd                                       |   70 
 oeli-0.5.0/oeli/man/sample_transition_probability_matrix.Rd               |   48 
 oeli-0.5.0/oeli/man/simulate_markov_chain.Rd                              |   56 
 oeli-0.5.0/oeli/man/stationary_distribution.Rd                            |   56 
 oeli-0.5.0/oeli/man/subsets.Rd                                            |only
 oeli-0.5.0/oeli/man/system_information.Rd                                 |   45 
 oeli-0.5.0/oeli/man/timed.Rd                                              |   74 
 oeli-0.5.0/oeli/man/variable_name.Rd                                      |   54 
 oeli-0.5.0/oeli/tests/testthat/test-calculate_density.R                   |  126 -
 oeli-0.5.0/oeli/tests/testthat/test-check_correlation_matrix.R            |  122 -
 oeli-0.5.0/oeli/tests/testthat/test-check_covariance_matrix.R             |  108 
 oeli-0.5.0/oeli/tests/testthat/test-check_list_of_lists.R                 |   40 
 oeli-0.5.0/oeli/tests/testthat/test-check_numeric_vector.R                |   52 
 oeli-0.5.0/oeli/tests/testthat/test-check_probability_vector.R            |   66 
 oeli-0.5.0/oeli/tests/testthat/test-check_transition_probability_matrix.R |  132 -
 oeli-0.5.0/oeli/tests/testthat/test-cholesky_root.R                       |   14 
 oeli-0.5.0/oeli/tests/testthat/test-chunk_vector.R                        |only
 oeli-0.5.0/oeli/tests/testthat/test-covariance_differencing.R             |   66 
 oeli-0.5.0/oeli/tests/testthat/test-cpp.R                                 |    2 
 oeli-0.5.0/oeli/tests/testthat/test-date_helpers.R                        |   74 
 oeli-0.5.0/oeli/tests/testthat/test-delete_data_frame_columns.R           |   36 
 oeli-0.5.0/oeli/tests/testthat/test-dictionary_helpers.R                  |  186 -
 oeli-0.5.0/oeli/tests/testthat/test-function_helpers.R                    |  198 -
 oeli-0.5.0/oeli/tests/testthat/test-group_data_frame.R                    |   64 
 oeli-0.5.0/oeli/tests/testthat/test-index_helpers.R                       |   40 
 oeli-0.5.0/oeli/tests/testthat/test-insert_matrix_column.R                |only
 oeli-0.5.0/oeli/tests/testthat/test-insert_vector_entry.R                 |only
 oeli-0.5.0/oeli/tests/testthat/test-list_helpers.R                        |   52 
 oeli-0.5.0/oeli/tests/testthat/test-markov_chain.R                        |   54 
 oeli-0.5.0/oeli/tests/testthat/test-match_arg.R                           |   68 
 oeli-0.5.0/oeli/tests/testthat/test-matrix_indices.R                      |   30 
 oeli-0.5.0/oeli/tests/testthat/test-package_helpers.R                     |   34 
 oeli-0.5.0/oeli/tests/testthat/test-package_logo.R                        |only
 oeli-0.5.0/oeli/tests/testthat/test-print_matrix.R                        |  220 -
 oeli-0.5.0/oeli/tests/testthat/test-sample_things.R                       |  128 -
 oeli-0.5.0/oeli/tests/testthat/test-storage_helpers.R                     |   92 
 oeli-0.5.0/oeli/tests/testthat/test-subsets.R                             |only
 oeli-0.5.0/oeli/tests/testthat/test-timed_evaluation.R                    |   78 
 oeli-0.5.0/oeli/tests/testthat/test-try_something.R                       |    8 
 oeli-0.5.0/oeli/vignettes/argument_validation.Rmd                         |  122 -
 oeli-0.5.0/oeli/vignettes/data_frame_helpers.Rmd                          |   66 
 oeli-0.5.0/oeli/vignettes/matrix_helpers.Rmd                              |   96 
 oeli-0.5.0/oeli/vignettes/package_helpers.Rmd                             |only
 oeli-0.5.0/oeli/vignettes/storage_helpers.Rmd                             |   94 
 oeli-0.5.0/oeli/vignettes/vector_helpers.Rmd                              |only
 142 files changed, 7942 insertions(+), 7882 deletions(-)

More information about oeli at CRAN
Permanent link

Package BED updated to version 1.5.2 with previous version 1.5.1 dated 2024-04-28

Title: Biological Entity Dictionary (BED)
Description: An interface for the 'Neo4j' database providing mapping between different identifiers of biological entities. This Biological Entity Dictionary (BED) has been developed to address three main challenges. The first one is related to the completeness of identifier mappings. Indeed, direct mapping information provided by the different systems are not always complete and can be enriched by mappings provided by other resources. More interestingly, direct mappings not identified by any of these resources can be indirectly inferred by using mappings to a third reference. For example, many human Ensembl gene ID are not directly mapped to any Entrez gene ID but such mappings can be inferred using respective mappings to HGNC ID. The second challenge is related to the mapping of deprecated identifiers. Indeed, entity identifiers can change from one resource release to another. The identifier history is provided by some resources, such as Ensembl or the NCBI, but it is generally not used by mapping [...truncated...]
Author: Patrice Godard [aut, cre, cph]
Maintainer: Patrice Godard <patrice.godard@gmail.com>

Diff between BED versions 1.5.1 dated 2024-04-28 and 1.5.2 dated 2024-05-22

 DESCRIPTION         |    6 
 MD5                 |   12 -
 R/exploreBe.R       |    1 
 R/exploreConvPath.R |    1 
 build/vignette.rds  |binary
 inst/doc/BED.html   |  314 +++++++++++++++++++++++++---------------------------
 inst/pkgdown.yml    |    2 
 7 files changed, 165 insertions(+), 171 deletions(-)

More information about BED at CRAN
Permanent link

Package pricelevels updated to version 1.3.0 with previous version 1.2.0 dated 2024-04-08

Title: Spatial Price Level Comparisons
Description: Price comparisons within or between countries provide an overall measure of the relative difference in prices, often denoted as price levels. This package provides index number methods for such price comparisons (e.g., The World Bank, 2011, <doi:10.1596/978-0-8213-9728-2>). Moreover, it contains functions for sampling and characterizing price data.
Author: Sebastian Weinand [aut, cre]
Maintainer: Sebastian Weinand <s.weinand90@googlemail.com>

Diff between pricelevels versions 1.2.0 dated 2024-04-08 and 1.3.0 dated 2024-05-22

 DESCRIPTION                     |    6 -
 MD5                             |   43 ++++++-------
 NEWS.md                         |    7 ++
 R/bilateral.index.r             |   24 +++++--
 R/cpd.R                         |   69 +++++++++++++-------
 R/geks.R                        |   51 ++++++++++-----
 R/gerardi.r                     |   30 ++++++---
 R/gkhamis.r                     |   30 ++++++---
 R/helper.r                      |   49 +++++++++++++-
 R/pricelevels.R                 |   67 +++++++++++++-------
 R/ratios.R                      |  132 ++++++++++++++++++++++++++--------------
 R/zzz.r                         |only
 inst/doc/pricelevels-intro.html |   30 ++++-----
 man/bilateral.index.Rd          |    5 -
 man/cpd.Rd                      |    8 +-
 man/geks.Rd                     |    5 -
 man/gerardi.Rd                  |    5 -
 man/gkhamis.Rd                  |    5 -
 man/pricelevels.Rd              |    5 -
 man/ratios.Rd                   |   43 +++++++------
 tests/testthat/test-cpd.R       |    4 -
 tests/testthat/test-helper.r    |   10 +++
 tests/testthat/test-ratios.R    |   47 +++++++-------
 23 files changed, 443 insertions(+), 232 deletions(-)

More information about pricelevels at CRAN
Permanent link

Package GaussSuppression updated to version 0.8.5 with previous version 0.8.3 dated 2024-03-22

Title: Tabular Data Suppression using Gaussian Elimination
Description: A statistical disclosure control tool to protect tables by suppression using the Gaussian elimination secondary suppression algorithm. A suggestion is to start by working with functions SuppressSmallCounts() and SuppressDominantCells(). These functions use primary suppression functions for the minimum frequency rule and the dominance rule, respectively. Novel functionality for suppression of disclosive cells is also included. General primary suppression functions can be supplied as input to the general working horse function, GaussSuppressionFromData(). Suppressed frequencies can be replaced by synthetic decimal numbers as described in Langsrud (2019) <doi:10.1007/s11222-018-9848-9>.
Author: Oeyvind Langsrud [aut, cre], Daniel Lupp [aut], Hege Boevelstad [ctb], Vidar Norstein Klungre [rev], Statistics Norway [cph]
Maintainer: Oeyvind Langsrud <oyl@ssb.no>

Diff between GaussSuppression versions 0.8.3 dated 2024-03-22 and 0.8.5 dated 2024-05-22

 DESCRIPTION                                           |   18 
 MD5                                                   |   30 
 NEWS.md                                               |   17 
 R/FixRiskyIntervals.R                                 |   21 
 R/MagnitudeRule.R                                     |    4 
 R/PackageSpecs.R                                      |    4 
 R/SuppressDominantCells.R                             |   17 
 inst/doc/Magnitude_table_suppression.html             |  694 +++++++--------
 inst/doc/Small_count_frequency_table_suppression.html |  540 +++++------
 inst/doc/define_tables.Rmd                            |    2 
 inst/doc/define_tables.html                           |  822 +++++++++---------
 man/MagnitudeRule.Rd                                  |    4 
 man/PackageSpecs.Rd                                   |    2 
 man/SuppressDominantCells.Rd                          |   21 
 tests/testthat/test-GaussSuppressionFromData.R        |   12 
 vignettes/define_tables.Rmd                           |    2 
 16 files changed, 1129 insertions(+), 1081 deletions(-)

More information about GaussSuppression at CRAN
Permanent link

Package smplot2 updated to version 0.2.2 with previous version 0.2.1 dated 2024-04-27

Title: Creating and Annotating a Composite Plot in 'ggplot2'
Description: Provides functions for creating and annotating a composite plot in 'ggplot2'. Offers background themes and shortcut plotting functions that produce figures that are appropriate for the format of scientific journals. Some methods are described in Min and Zhou (2021) <doi:10.3389/fgene.2021.802894>.
Author: Seung Hyun Min [aut, cre]
Maintainer: Seung Hyun (Sam) Min <seung.min@mail.mcgill.ca>

Diff between smplot2 versions 0.2.1 dated 2024-04-27 and 0.2.2 dated 2024-05-22

 DESCRIPTION             |    6 +++---
 MD5                     |   20 ++++++++++++++------
 NAMESPACE               |    4 ++++
 R/sm_add_arrow.R        |only
 R/sm_add_line.R         |only
 R/sm_add_polygon.R      |only
 R/sm_add_rect.R         |only
 R/sm_common_ylabel.R    |    2 +-
 R/sm_put_together.R     |   21 +++++++++++++++++----
 man/sm_add_arrow.Rd     |only
 man/sm_add_line.Rd      |only
 man/sm_add_polygon.Rd   |only
 man/sm_add_rect.Rd      |only
 man/sm_common_ylabel.Rd |    2 +-
 man/sm_put_together.Rd  |    2 +-
 15 files changed, 41 insertions(+), 16 deletions(-)

More information about smplot2 at CRAN
Permanent link

Package planr updated to version 0.4.1 with previous version 0.4.0 dated 2024-04-17

Title: Tools for Supply Chain Management, Demand and Supply Planning
Description: Perform flexible and quick calculations for Demand and Supply Planning, such as projected inventories and coverages, as well as replenishment plan. For any time bucket, daily, weekly or monthly, and any granularity level, product or group of products.
Author: Nicolas Nguyen [aut, cre]
Maintainer: Nicolas Nguyen <nikonguyen@yahoo.fr>

Diff between planr versions 0.4.0 dated 2024-04-17 and 0.4.1 dated 2024-05-22

 DESCRIPTION               |    6 
 MD5                       |   10 -
 R/const_dmd.R             |    4 
 README.md                 |  372 ++++++++++++++++++++++++++--------------------
 inst/doc/get_started.html |   24 +-
 inst/doc/user_cases.html  |   52 +++---
 6 files changed, 262 insertions(+), 206 deletions(-)

More information about planr at CRAN
Permanent link

Package Copula.surv updated to version 1.6 with previous version 1.5 dated 2024-05-15

Title: Analysis of Bivariate Survival Data Based on Copulas
Description: Simulating bivariate survival data from copula models. Estimation of the association parameter in copula models. Two different ways to estimate the association parameter in copula models are implemented. A goodness-of-fit test for a given copula model is implemented. See Emura, Lin and Wang (2010) <doi:10.1016/j.csda.2010.03.013> for details.
Author: Takeshi Emura
Maintainer: Takeshi Emura <takeshiemura@gmail.com>

Diff between Copula.surv versions 1.5 dated 2024-05-15 and 1.6 dated 2024-05-22

 DESCRIPTION            |    8 ++++----
 MD5                    |    6 +++++-
 R/Weib.reg.Gumbel.R    |only
 R/simu.Joe.R           |only
 man/Weib.reg.Gumbel.Rd |only
 man/simu.Joe.Rd        |only
 6 files changed, 9 insertions(+), 5 deletions(-)

More information about Copula.surv at CRAN
Permanent link

Package BIGL updated to version 1.9.1 with previous version 1.9.0 dated 2023-12-20

Title: Biochemically Intuitive Generalized Loewe Model
Description: Response surface methods for drug synergy analysis. Available methods include generalized and classical Loewe formulations as well as Highest Single Agent methodology. Response surfaces can be plotted in an interactive 3-D plot and formal statistical tests for presence of synergistic effects are available. Implemented methods and tests are described in the article "BIGL: Biochemically Intuitive Generalized Loewe null model for prediction of the expected combined effect compatible with partial agonism and antagonism" by Koen Van der Borght, Annelies Tourny, Rytis Bagdziunas, Olivier Thas, Maxim Nazarov, Heather Turner, Bie Verbist & Hugo Ceulemans (2017) <doi:10.1038/s41598-017-18068-5>.
Author: Heather Turner, Annelies Tourny, Olivier Thas, Maxim Nazarov, Rytis Bagdziunas, Stijn Hawinkel, Javier Franco Perez, Kathy Mutambanengwe
Maintainer: Kathy Mutambanengwe <kathy.mutambanengwe@openanalytics.eu>

Diff between BIGL versions 1.9.0 dated 2023-12-20 and 1.9.1 dated 2024-05-22

 DESCRIPTION               |   10 -
 MD5                       |   12 -
 NEWS.md                   |    4 
 R/splitPlot.R             |   18 +-
 inst/doc/analysis.html    |  409 +++++++++++++++++++++++-----------------------
 inst/doc/methodology.html |    4 
 man/wildbootAddResids.Rd  |  118 ++++++-------
 7 files changed, 293 insertions(+), 282 deletions(-)

More information about BIGL at CRAN
Permanent link

Package spacefillr updated to version 0.3.3 with previous version 0.3.2 dated 2022-10-24

Title: Space-Filling Random and Quasi-Random Sequences
Description: Generates random and quasi-random space-filling sequences. Supports the following sequences: 'Halton', 'Sobol', 'Owen'-scrambled 'Sobol', 'Owen'-scrambled 'Sobol' with errors distributed as blue noise, progressive jittered, progressive multi-jittered ('PMJ'), 'PMJ' with blue noise, 'PMJ02', and 'PMJ02' with blue noise. Includes a 'C++' 'API'. Methods derived from "Constructing Sobol sequences with better two-dimensional projections" (2012) <doi:10.1137/070709359> S. Joe and F. Y. Kuo, "Progressive Multi-Jittered Sample Sequences" (2018) <https://graphics.pixar.com/library/ProgressiveMultiJitteredSampling/paper.pdf> Christensen, P., Kensler, A. and Kilpatrick, C., and "A Low-Discrepancy Sampler that Distributes Monte Carlo Errors as a Blue Noise in Screen Space" (2019) E. Heitz, B. Laurent, O. Victor, C. David and I. Jean-Claude, <doi:10.1145/3306307.3328191>.
Author: Tyler Morgan-Wall [aut, cph, cre] , Andrew Helmer [ctb, cph], Leonhard Gruenschloss [ctb, cph], Eric Heitz [ctb, cph]
Maintainer: Tyler Morgan-Wall <tylermw@gmail.com>

Diff between spacefillr versions 0.3.2 dated 2022-10-24 and 0.3.3 dated 2024-05-22

 DESCRIPTION        |    8 ++++----
 MD5                |    4 ++--
 inst/include/rng.h |   31 +++++++++++++++++++++++++------
 3 files changed, 31 insertions(+), 12 deletions(-)

More information about spacefillr at CRAN
Permanent link

Tue, 21 May 2024

Package pathling updated to version 7.0.0 with previous version 6.4.2 dated 2023-12-20

Title: A Library for using 'Pathling'
Description: R API for 'Pathling', a tool for querying and transforming electronic health record data that is represented using the 'Fast Healthcare Interoperability Resources' (FHIR) standard - see <https://pathling.csiro.au/docs>.
Author: Australian e-Health Research Centre, CSIRO [cph, cre], Piotr Szul [aut], John Grimes [aut]
Maintainer: "Australian e-Health Research Centre, CSIRO" <ontoserver-support@csiro.au>

Diff between pathling versions 6.4.2 dated 2023-12-20 and 7.0.0 dated 2024-05-21

 DESCRIPTION             |   20 ++++++++++----------
 MD5                     |   19 ++++++++++---------
 R/context.R             |    6 ------
 R/datasource.R          |   26 ++++++++++++++++++++++----
 R/dependencies.R        |    2 +-
 README.md               |    2 +-
 man/SaveMode.Rd         |only
 man/ds_write_ndjson.Rd  |    4 +++-
 man/ds_write_parquet.Rd |    4 +++-
 man/pathling_connect.Rd |    2 +-
 man/pathling_spark.Rd   |    4 ++--
 11 files changed, 53 insertions(+), 36 deletions(-)

More information about pathling at CRAN
Permanent link

Package packageRank updated to version 0.9.1 with previous version 0.9.0 dated 2024-04-23

Title: Computation and Visualization of Package Download Counts and Percentiles
Description: Compute and visualize the cross-sectional and longitudinal number and rank percentile of package downloads from Posit/RStudio's CRAN mirror.
Author: Peter Li [aut, cre]
Maintainer: Peter Li <lindbrook@gmail.com>

Diff between packageRank versions 0.9.0 dated 2024-04-23 and 0.9.1 dated 2024-05-21

 DESCRIPTION                                |    8 -
 MD5                                        |   22 +-
 NEWS.md                                    |   29 +++
 R/cranDownloads.R                          |  212 +--------------------------
 R/cranDownloadsA.R                         |only
 R/cranDownloadsB.R                         |only
 R/cranDownloadsPlotFunctions.R             |  220 +++++++++++++++--------------
 R/cranDownloadsPlotSmoother.R              |   66 +++++---
 R/cranMirrors.R                            |    6 
 R/resolveDate.R                            |    5 
 README.md                                  |  104 ++++++++++++-
 man/cranDownloads.Rd                       |    9 -
 man/figures/README-non_pro_mode_plot-1.png |only
 man/figures/README-pro_mode_plot-1.png     |only
 14 files changed, 322 insertions(+), 359 deletions(-)

More information about packageRank at CRAN
Permanent link

Package torch updated to version 0.13.0 with previous version 0.12.0 dated 2023-12-15

Title: Tensors and Neural Networks with 'GPU' Acceleration
Description: Provides functionality to define and train neural networks similar to 'PyTorch' by Paszke et al (2019) <doi:10.48550/arXiv.1912.01703> but written entirely in R using the 'libtorch' library. Also supports low-level tensor operations and 'GPU' acceleration.
Author: Daniel Falbel [aut, cre, cph], Javier Luraschi [aut], Dmitriy Selivanov [ctb], Athos Damiani [ctb], Christophe Regouby [ctb], Krzysztof Joachimiak [ctb], Hamada S. Badr [ctb], Sebastian Fischer [ctb], RStudio [cph]
Maintainer: Daniel Falbel <daniel@rstudio.com>

Diff between torch versions 0.12.0 dated 2023-12-15 and 0.13.0 dated 2024-05-21

 DESCRIPTION                             |   16 +-
 MD5                                     |  182 ++++++++++++++++----------------
 NAMESPACE                               |    4 
 NEWS.md                                 |   30 +++++
 R/autocast.R                            |   62 +++++++---
 R/autograd.R                            |   12 +-
 R/compare.R                             |only
 R/creation-ops.R                        |   18 ++-
 R/distributions-categorical.R           |    2 
 R/dtype.R                               |    4 
 R/gen-method.R                          |    4 
 R/install.R                             |    6 -
 R/linalg.R                              |   14 ++
 R/nn-conv.R                             |    6 -
 R/nn-pooling.R                          |    4 
 R/nn-sparse.R                           |   12 +-
 R/nn.R                                  |  170 ++++++++++++++++++++---------
 R/nnf-activation.R                      |   12 +-
 R/nnf-embedding.R                       |    2 
 R/optim-adadelta.R                      |    2 
 R/optim-adagrad.R                       |    2 
 R/optim-rmsprop.R                       |    2 
 R/optim.R                               |    2 
 R/package.R                             |   17 +-
 R/tensor.R                              |   42 ++++---
 R/utils-data-dataloader.R               |    2 
 build/partial.rdb                       |binary
 build/vignette.rds                      |binary
 inst/doc/distributions.R                |    2 
 inst/doc/distributions.html             |    4 
 inst/doc/extending-autograd.R           |    2 
 inst/doc/extending-autograd.html        |    4 
 inst/doc/indexing.R                     |    2 
 inst/doc/indexing.html                  |    4 
 inst/doc/installation.R                 |    2 
 inst/doc/installation.Rmd               |   27 ++++
 inst/doc/installation.html              |   70 ++++++++----
 inst/doc/loading-data.R                 |    2 
 inst/doc/loading-data.html              |    6 -
 inst/doc/python-to-r.R                  |    2 
 inst/doc/python-to-r.html               |    4 
 inst/doc/serialization.R                |    2 
 inst/doc/serialization.html             |    4 
 inst/doc/tensor-creation.R              |    2 
 inst/doc/tensor-creation.html           |    4 
 inst/doc/torchscript.R                  |    2 
 inst/doc/torchscript.html               |    4 
 inst/doc/using-autograd.R               |    2 
 inst/doc/using-autograd.html            |    4 
 man/clone_module.Rd                     |only
 man/linalg_cholesky.Rd                  |    1 
 man/linalg_cholesky_ex.Rd               |    1 
 man/linalg_det.Rd                       |    1 
 man/linalg_eig.Rd                       |    1 
 man/linalg_eigh.Rd                      |    1 
 man/linalg_eigvals.Rd                   |    1 
 man/linalg_eigvalsh.Rd                  |    1 
 man/linalg_householder_product.Rd       |    1 
 man/linalg_inv.Rd                       |    1 
 man/linalg_inv_ex.Rd                    |    1 
 man/linalg_lstsq.Rd                     |    1 
 man/linalg_matrix_norm.Rd               |    1 
 man/linalg_matrix_power.Rd              |    1 
 man/linalg_matrix_rank.Rd               |    1 
 man/linalg_multi_dot.Rd                 |    1 
 man/linalg_norm.Rd                      |    1 
 man/linalg_pinv.Rd                      |    1 
 man/linalg_qr.Rd                        |    1 
 man/linalg_slogdet.Rd                   |    1 
 man/linalg_solve.Rd                     |    1 
 man/linalg_solve_triangular.Rd          |only
 man/linalg_svd.Rd                       |    1 
 man/linalg_svdvals.Rd                   |    1 
 man/linalg_tensorinv.Rd                 |    1 
 man/linalg_tensorsolve.Rd               |    1 
 man/linalg_vector_norm.Rd               |    1 
 man/local_autocast.Rd                   |   12 ++
 man/nn_module.Rd                        |    7 +
 man/nn_prune_head.Rd                    |    2 
 man/nnf_multi_head_attention_forward.Rd |    8 -
 man/optim_adadelta.Rd                   |    2 
 man/optim_rmsprop.Rd                    |    2 
 man/torch_arange.Rd                     |    2 
 src/indexing.cpp                        |    6 -
 src/torch_api.cpp                       |    5 
 src/xptr.cpp                            |    4 
 tests/testthat/test-compare.R           |only
 tests/testthat/test-creation-ops.R      |   14 ++
 tests/testthat/test-linalg.R            |    9 +
 tests/testthat/test-nn.R                |  157 +++++++++++++++++++++------
 tests/testthat/test-save.R              |    4 
 tests/testthat/test-tensor.R            |   97 ++++++++++++-----
 tools/torchgen/R/r.R                    |    2 
 vignettes/installation.Rmd              |   27 ++++
 94 files changed, 806 insertions(+), 363 deletions(-)

More information about torch at CRAN
Permanent link

Package opticut updated to version 0.1-3 with previous version 0.1-2 dated 2018-02-01

Title: Likelihood Based Optimal Partitioning and Indicator Species Analysis
Description: Likelihood based optimal partitioning and indicator species analysis. Finding the best binary partition for each species based on model selection, with the possibility to take into account modifying/confounding variables as described in Kemencei et al. (2014) <doi:10.1556/ComEc.15.2014.2.6>. The package implements binary and multi-level response models, various measures of uncertainty, Lorenz-curve based thresholding, with native support for parallel computations.
Author: Peter Solymos [cre, aut] , Ermias T. Azeria [ctb]
Maintainer: Peter Solymos <psolymos@gmail.com>

Diff between opticut versions 0.1-2 dated 2018-02-01 and 0.1-3 dated 2024-05-21

 DESCRIPTION        |   12 +++++-----
 MD5                |   37 ++++++++++++++++++--------------
 R/col2gray.R       |    2 -
 build/partial.rdb  |binary
 data/dolina.rda    |binary
 data/warblers.rda  |only
 inst/WORDLIST      |   61 ++++++++++++++++++++++++++---------------------------
 man/allComb.Rd     |    2 -
 man/bestmodel.Rd   |    2 -
 man/beta2i.Rd      |    2 -
 man/lorenz.Rd      |   14 ++++++------
 man/multicut.Rd    |    4 +--
 man/occolors.Rd    |    4 +--
 man/ocoptions.Rd   |    4 +--
 man/opticut.Rd     |    4 +--
 man/optilevels.Rd  |    4 +--
 man/rankComb.Rd    |    2 -
 man/uncertainty.Rd |    2 -
 man/warblers.Rd    |only
 tests              |only
 20 files changed, 81 insertions(+), 75 deletions(-)

More information about opticut at CRAN
Permanent link

Package mlmhelpr updated to version 0.1.1 with previous version 0.1.0 dated 2022-11-04

Title: Multilevel/Mixed Model Helper Functions
Description: A collection of miscellaneous helper function for running multilevel/mixed models in 'lme4'. This package aims to provide functions to compute common tasks when estimating multilevel models such as computing the intraclass correlation and design effect, centering variables, estimating the proportion of variance explained at each level, pseudo-R squared, random intercept and slope reliabilities, tests for homogeneity of variance at level-1, and cluster robust and bootstrap standard errors. The tests and statistics reported in the package are from Raudenbush & Bryk (2002, ISBN:9780761919049), Hox et al. (2018, ISBN:9781138121362), and Snijders & Bosker (2012, ISBN:9781849202015).
Author: Louis Rocconi [aut, cre] , Anthony Schmidt [aut]
Maintainer: Louis Rocconi <lrocconi@utk.edu>

Diff between mlmhelpr versions 0.1.0 dated 2022-11-04 and 0.1.1 dated 2024-05-21

 DESCRIPTION       |    8 ++++----
 MD5               |   11 ++++++-----
 NEWS.md           |only
 R/hausman.R       |    2 +-
 README.md         |    4 ++--
 build/partial.rdb |binary
 man/hausman.Rd    |    2 +-
 7 files changed, 14 insertions(+), 13 deletions(-)

More information about mlmhelpr at CRAN
Permanent link

Package gimme updated to version 0.7-17 with previous version 0.7-16 dated 2024-01-31

Title: Group Iterative Multiple Model Estimation
Description: Data-driven approach for arriving at person-specific time series models. The method first identifies which relations replicate across the majority of individuals to detect signal from noise. These group-level relations are then used as a foundation for starting the search for person-specific (or individual-level) relations. See Gates & Molenaar (2012) <doi:10.1016/j.neuroimage.2012.06.026>.
Author: Stephanie Lane [aut, trl], Kathleen Gates [aut, cre, ccp], Zachary Fisher [aut], Cara Arizmendi [aut], Peter Molenaar [aut, ccp], Edgar Merkle [ctb], Michael Hallquist [ctb], Hallie Pike [ctb], Teague Henry [ctb], Kelly Duffy [ctb], Lan Luo [ctb], Ad [...truncated...]
Maintainer: Kathleen M Gates <gateskm@email.unc.edu>

Diff between gimme versions 0.7-16 dated 2024-01-31 and 0.7-17 dated 2024-05-21

 DESCRIPTION                  |    8 ++++----
 MD5                          |   18 +++++++++---------
 R/determine.subgroups.R      |    2 +-
 R/final.org.R                |   10 ++++++++--
 R/get.params.R               |    2 +-
 R/gimme.R                    |    7 +++++--
 R/setupTransformData.R       |   32 ++++++++++++++++++++++++++++++--
 R/subgroupStage.R            |    6 ++++--
 inst/doc/gimme_vignette.html |    6 +++---
 man/final.org.Rd             |    2 +-
 10 files changed, 66 insertions(+), 27 deletions(-)

More information about gimme at CRAN
Permanent link

Package gausscov updated to version 1.1.3 with previous version 1.1.2 dated 2024-03-19

Title: The Gaussian Covariate Method for Variable Selection
Description: The standard linear regression theory whether frequentist or Bayesian is based on an 'assumed (revealed?) truth' (John Tukey) attitude to models. This is reflected in the language of statistical inference which involves a concept of truth, for example confidence intervals, hypothesis testing and consistency. The motivation behind this package was to remove the word true from the theory and practice of linear regression and to replace it by approximation. The approximations considered are the least squares approximations. An approximation is called valid if it contains no irrelevant covariates. This is operationalized using the concept of a Gaussian P-value which is the probability that pure Gaussian noise is better in term of least squares than the covariate. The precise definition given in the paper, it is intuitive and requires only four simple equations. Its overwhelming advantage compared with a standard F P-value is that is is exact and valid whatever the data. In contrast F P [...truncated...]
Author: Laurie Davies [aut, cre]
Maintainer: Laurie Davies <pldavies44@cantab.net>

Diff between gausscov versions 1.1.2 dated 2024-03-19 and 1.1.3 dated 2024-05-21

 DESCRIPTION     |   10 +++++-----
 MD5             |   16 ++++++++--------
 R/f1st.R        |   28 ++++++++++++++++++++++------
 R/flag.R        |    9 ++-------
 R/simgpval.R    |    2 +-
 man/f1st.Rd     |    2 +-
 man/flag.Rd     |    7 +++----
 man/simgpval.Rd |    2 +-
 src/gaucov.f    |    8 +++++---
 9 files changed, 48 insertions(+), 36 deletions(-)

More information about gausscov at CRAN
Permanent link

Package copre updated to version 0.2.1 with previous version 0.2.0 dated 2023-01-31

Title: Tools for Nonparametric Martingale Posterior Sampling
Description: Performs Bayesian nonparametric density estimation using Martingale posterior distributions including the Copula Resampling (CopRe) algorithm. Also included are a Gibbs sampler for the marginal Gibbs-type mixture model and an extension to include full uncertainty quantification via a predictive sequence resampling (SeqRe) algorithm. The CopRe and SeqRe samplers generate random nonparametric distributions as output, leading to complete nonparametric inference on posterior summaries. Routines for calculating arbitrary functionals from the sampled distributions are included as well as an important algorithm for finding the number and location of modes, which can then be used to estimate the clusters in the data using, for example, k-means. Implements work developed in Moya B., Walker S. G. (2022). <doi:10.48550/arxiv.2206.08418>, Fong, E., Holmes, C., Walker, S. G. (2021) <doi:10.48550/arxiv.2103.15671>, and Escobar M. D., West, M. (1995) <doi:10.1080/01621459.1995.10476550 [...truncated...]
Author: Blake Moya [cre, aut], The University of Texas at Austin [cph, fnd]
Maintainer: Blake Moya <blakemoya@utexas.edu>

Diff between copre versions 0.2.0 dated 2023-01-31 and 0.2.1 dated 2024-05-21

 DESCRIPTION               |    8 ++++----
 MD5                       |   16 ++++++++--------
 NEWS.md                   |    5 +++++
 build/partial.rdb         |binary
 man/antimodes.Rd          |    2 +-
 man/copre-package.Rd      |    1 -
 man/modes.Rd              |    2 +-
 man/register_s3_method.Rd |    2 +-
 src/seqre.cpp             |    6 +++---
 9 files changed, 23 insertions(+), 19 deletions(-)

More information about copre at CRAN
Permanent link

Package vegan updated to version 2.6-6.1 with previous version 2.6-6 dated 2024-05-14

Title: Community Ecology Package
Description: Ordination methods, diversity analysis and other functions for community and vegetation ecologists.
Author: Jari Oksanen [aut, cre], Gavin L. Simpson [aut], F. Guillaume Blanchet [aut], Roeland Kindt [aut], Pierre Legendre [aut], Peter R. Minchin [aut], R.B. O'Hara [aut], Peter Solymos [aut], M. Henry H. Stevens [aut], Eduard Szoecs [aut], Helene Wagner [a [...truncated...]
Maintainer: Jari Oksanen <jhoksane@gmail.com>

Diff between vegan versions 2.6-6 dated 2024-05-14 and 2.6-6.1 dated 2024-05-21

 DESCRIPTION                  |    6 +++---
 MD5                          |   16 ++++++++--------
 build/partial.rdb            |binary
 inst/NEWS.md                 |    6 ++++++
 inst/doc/decision-vegan.pdf  |binary
 inst/doc/diversity-vegan.pdf |binary
 inst/doc/intro-vegan.pdf     |binary
 inst/doc/partitioning.pdf    |binary
 src/goffactor.c              |    8 +++++---
 9 files changed, 22 insertions(+), 14 deletions(-)

More information about vegan at CRAN
Permanent link

Package mvtnorm updated to version 1.2-5 with previous version 1.2-4 dated 2023-11-27

Title: Multivariate Normal and t Distributions
Description: Computes multivariate normal and t probabilities, quantiles, random deviates, and densities. Log-likelihoods for multivariate Gaussian models and Gaussian copulae parameterised by Cholesky factors of covariance or precision matrices are implemented for interval-censored and exact data, or a mix thereof. Score functions for these log-likelihoods are available. A class representing multiple lower triangular matrices and corresponding methods are part of this package.
Author: Alan Genz [aut], Frank Bretz [aut], Tetsuhisa Miwa [aut], Xuefei Mi [aut], Friedrich Leisch [ctb], Fabian Scheipl [ctb], Bjoern Bornkamp [ctb] , Martin Maechler [ctb] , Torsten Hothorn [aut, cre]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>

Diff between mvtnorm versions 1.2-4 dated 2023-11-27 and 1.2-5 dated 2024-05-21

 DESCRIPTION                     |    8 
 MD5                             |   58 -
 NAMESPACE                       |    5 
 R/ltMatrices.R                  |   92 ++
 R/mvt.R                         |   42 -
 R/tvpack.R                      |    8 
 build/partial.rdb               |binary
 build/vignette.rds              |binary
 inst/NEWS.Rd                    |   26 
 inst/NEWS.old                   |    4 
 inst/doc/MVT_Rnews.R            |   30 
 inst/doc/MVT_Rnews.Rnw          |  100 +--
 inst/doc/MVT_Rnews.pdf          |binary
 inst/doc/lmvnorm_src.R          |  160 ++--
 inst/doc/lmvnorm_src.Rnw        | 1332 ++++++++++++++++++++++------------------
 inst/doc/lmvnorm_src.pdf        |binary
 inst/include/mvtnorm.h          |    2 
 inst/litdb.bib                  |   37 -
 man/ltMatrices.Rd               |   21 
 src/ltMatrices.c                |   84 ++
 src/mvtnorm-init.c              |    5 
 src/mvtnorm.h                   |    2 
 tests/bugfix-tests.Rout.save    |    5 
 tests/plmvnorm-Ex.Rout.save     |    5 
 tests/regtest-TVPACK.R          |   41 +
 tests/regtest-TVPACK.Rout.save  |   70 +-
 vignettes/MVT_Rnews.Rnw         |  100 +--
 vignettes/litdb.bib             |   37 -
 vignettes/lmvnorm_src.Rnw       | 1332 ++++++++++++++++++++++------------------
 vignettes/lmvnorm_src.Rout.save |   39 +
 30 files changed, 2176 insertions(+), 1469 deletions(-)

More information about mvtnorm at CRAN
Permanent link

Package keras3 updated to version 1.0.0 with previous version 0.2.0 dated 2024-04-18

Title: R Interface to 'Keras'
Description: Interface to 'Keras' <https://keras.io>, a high-level neural networks API. 'Keras' was developed with a focus on enabling fast experimentation, supports both convolution based networks and recurrent networks (as well as combinations of the two), and runs seamlessly on both CPU and GPU devices.
Author: Tomasz Kalinowski [aut, cph, cre], Daniel Falbel [ctb, cph], JJ Allaire [aut, cph], Francois Chollet [aut, cph], Posit Software, PBC [cph, fnd], Google [cph, fnd], Yuan Tang [ctb, cph] , Wouter Van Der Bijl [ctb, cph], Martin Studer [ctb, cph], Sigri [...truncated...]
Maintainer: Tomasz Kalinowski <tomasz@posit.co>

Diff between keras3 versions 0.2.0 dated 2024-04-18 and 1.0.0 dated 2024-05-21

 keras3-0.2.0/keras3/man/pack_x_y_sample_weight.Rd                                   |only
 keras3-0.2.0/keras3/man/unpack_x_y_sample_weight.Rd                                 |only
 keras3-0.2.0/keras3/tools                                                           |only
 keras3-1.0.0/keras3/DESCRIPTION                                                     |    6 
 keras3-1.0.0/keras3/MD5                                                             |  801 ++++------
 keras3-1.0.0/keras3/NAMESPACE                                                       |   14 
 keras3-1.0.0/keras3/NEWS.md                                                         |   55 
 keras3-1.0.0/keras3/R/Layer.R                                                       |    5 
 keras3-1.0.0/keras3/R/LearningRateSchedule.R                                        |    8 
 keras3-1.0.0/keras3/R/applications.R                                                |    7 
 keras3-1.0.0/keras3/R/callbacks.R                                                   |    4 
 keras3-1.0.0/keras3/R/dataset-utils.R                                               |    8 
 keras3-1.0.0/keras3/R/install.R                                                     |    4 
 keras3-1.0.0/keras3/R/layer-r-helpers.R                                             |    9 
 keras3-1.0.0/keras3/R/layers-core.R                                                 |    7 
 keras3-1.0.0/keras3/R/layers-preprocessing.R                                        |   44 
 keras3-1.0.0/keras3/R/losses.R                                                      |  231 +-
 keras3-1.0.0/keras3/R/metrics.R                                                     |  211 --
 keras3-1.0.0/keras3/R/model-creation.R                                              |  160 +
 keras3-1.0.0/keras3/R/model-training.R                                              |   34 
 keras3-1.0.0/keras3/R/ops-image.R                                                   |   75 
 keras3-1.0.0/keras3/R/ops-linalg.R                                                  |   38 
 keras3-1.0.0/keras3/R/ops-nn.R                                                      |   38 
 keras3-1.0.0/keras3/R/ops.R                                                         |  234 ++
 keras3-1.0.0/keras3/R/optimizers-schedules.R                                        |    2 
 keras3-1.0.0/keras3/R/optimizers.R                                                  |    2 
 keras3-1.0.0/keras3/R/package.R                                                     |    1 
 keras3-1.0.0/keras3/R/py-classes.R                                                  |    8 
 keras3-1.0.0/keras3/R/r-utils.R                                                     |    4 
 keras3-1.0.0/keras3/R/random.R                                                      |    4 
 keras3-1.0.0/keras3/R/reexports.R                                                   |    9 
 keras3-1.0.0/keras3/R/shape.R                                                       |   52 
 keras3-1.0.0/keras3/R/utils.R                                                       |   20 
 keras3-1.0.0/keras3/R/zzz-metrics-callback.R                                        |    4 
 keras3-1.0.0/keras3/build/vignette.rds                                              |binary
 keras3-1.0.0/keras3/inst/doc/custom_train_step_in_tensorflow.Rmd                    |   38 
 keras3-1.0.0/keras3/inst/doc/custom_train_step_in_tensorflow.html                   |   20 
 keras3-1.0.0/keras3/inst/doc/distributed_training_with_tensorflow.Rmd               |   26 
 keras3-1.0.0/keras3/inst/doc/distributed_training_with_tensorflow.html              |   14 
 keras3-1.0.0/keras3/inst/doc/distribution.Rmd                                       |   38 
 keras3-1.0.0/keras3/inst/doc/distribution.html                                      |   20 
 keras3-1.0.0/keras3/inst/doc/functional_api.Rmd                                     |  170 +-
 keras3-1.0.0/keras3/inst/doc/functional_api.html                                    |   88 -
 keras3-1.0.0/keras3/inst/doc/getting_started.Rmd                                    |   46 
 keras3-1.0.0/keras3/inst/doc/getting_started.html                                   |   18 
 keras3-1.0.0/keras3/inst/doc/intro_to_keras_for_engineers.Rmd                       |   68 
 keras3-1.0.0/keras3/inst/doc/intro_to_keras_for_engineers.html                      |   34 
 keras3-1.0.0/keras3/inst/doc/intro_to_keras_for_researchers.Rmd                     |    2 
 keras3-1.0.0/keras3/inst/doc/intro_to_keras_for_researchers.html                    |    2 
 keras3-1.0.0/keras3/inst/doc/making_new_layers_and_models_via_subclassing.Rmd       |   74 
 keras3-1.0.0/keras3/inst/doc/making_new_layers_and_models_via_subclassing.html      |    8 
 keras3-1.0.0/keras3/inst/doc/sequential_model.Rmd                                   |   88 -
 keras3-1.0.0/keras3/inst/doc/sequential_model.html                                  |   40 
 keras3-1.0.0/keras3/inst/doc/serialization_and_saving.Rmd                           |   71 
 keras3-1.0.0/keras3/inst/doc/serialization_and_saving.html                          |   75 
 keras3-1.0.0/keras3/inst/doc/training_with_built_in_methods.Rmd                     |  202 +-
 keras3-1.0.0/keras3/inst/doc/training_with_built_in_methods.html                    |  110 -
 keras3-1.0.0/keras3/inst/doc/transfer_learning.Rmd                                  |   72 
 keras3-1.0.0/keras3/inst/doc/transfer_learning.html                                 |   14 
 keras3-1.0.0/keras3/inst/doc/understanding_masking_and_padding.Rmd                  |   30 
 keras3-1.0.0/keras3/inst/doc/writing_a_custom_training_loop_in_tensorflow.Rmd       |   98 -
 keras3-1.0.0/keras3/inst/doc/writing_a_custom_training_loop_in_tensorflow.html      |   62 
 keras3-1.0.0/keras3/inst/doc/writing_your_own_callbacks.Rmd                         |   22 
 keras3-1.0.0/keras3/man/Constraint.Rd                                               |    1 
 keras3-1.0.0/keras3/man/Layer.Rd                                                    |    3 
 keras3-1.0.0/keras3/man/LearningRateSchedule.Rd                                     |    5 
 keras3-1.0.0/keras3/man/Loss.Rd                                                     |    2 
 keras3-1.0.0/keras3/man/application_mobilenet_v3_large.Rd                           |    2 
 keras3-1.0.0/keras3/man/application_mobilenet_v3_small.Rd                           |    2 
 keras3-1.0.0/keras3/man/audio_dataset_from_directory.Rd                             |    2 
 keras3-1.0.0/keras3/man/callback_backup_and_restore.Rd                              |    4 
 keras3-1.0.0/keras3/man/clear_session.Rd                                            |   12 
 keras3-1.0.0/keras3/man/clone_model.Rd                                              |  166 +-
 keras3-1.0.0/keras3/man/config_disable_interactive_logging.Rd                       |    2 
 keras3-1.0.0/keras3/man/config_disable_traceback_filtering.Rd                       |    2 
 keras3-1.0.0/keras3/man/config_enable_interactive_logging.Rd                        |    2 
 keras3-1.0.0/keras3/man/config_enable_traceback_filtering.Rd                        |    2 
 keras3-1.0.0/keras3/man/config_is_interactive_logging_enabled.Rd                    |    2 
 keras3-1.0.0/keras3/man/config_is_traceback_filtering_enabled.Rd                    |    2 
 keras3-1.0.0/keras3/man/deserialize_keras_object.Rd                                 |    2 
 keras3-1.0.0/keras3/man/figures/op-gelu-plot-1.png                                  |binary
 keras3-1.0.0/keras3/man/figures/op-hard-sigmoid-plot-1.png                          |binary
 keras3-1.0.0/keras3/man/figures/op-leaky-relu-plot-1.png                            |binary
 keras3-1.0.0/keras3/man/freeze_weights.Rd                                           |   12 
 keras3-1.0.0/keras3/man/get_file.Rd                                                 |    2 
 keras3-1.0.0/keras3/man/get_source_inputs.Rd                                        |    2 
 keras3-1.0.0/keras3/man/image_array_save.Rd                                         |    3 
 keras3-1.0.0/keras3/man/image_dataset_from_directory.Rd                             |    2 
 keras3-1.0.0/keras3/man/image_from_array.Rd                                         |    3 
 keras3-1.0.0/keras3/man/image_load.Rd                                               |    3 
 keras3-1.0.0/keras3/man/image_smart_resize.Rd                                       |    3 
 keras3-1.0.0/keras3/man/image_to_array.Rd                                           |    3 
 keras3-1.0.0/keras3/man/install_keras.Rd                                            |    4 
 keras3-1.0.0/keras3/man/keras_model_sequential.Rd                                   |    8 
 keras3-1.0.0/keras3/man/layer_cropping_1d.Rd                                        |    2 
 keras3-1.0.0/keras3/man/layer_embedding.Rd                                          |    5 
 keras3-1.0.0/keras3/man/layer_feature_space.Rd                                      |    2 
 keras3-1.0.0/keras3/man/layer_random_zoom.Rd                                        |    2 
 keras3-1.0.0/keras3/man/layer_resizing.Rd                                           |   15 
 keras3-1.0.0/keras3/man/layer_tfsm.Rd                                               |    4 
 keras3-1.0.0/keras3/man/learning_rate_schedule_cosine_decay.Rd                      |    2 
 keras3-1.0.0/keras3/man/loss_binary_crossentropy.Rd                                 |    3 
 keras3-1.0.0/keras3/man/loss_binary_focal_crossentropy.Rd                           |   10 
 keras3-1.0.0/keras3/man/loss_categorical_crossentropy.Rd                            |    2 
 keras3-1.0.0/keras3/man/loss_categorical_focal_crossentropy.Rd                      |    4 
 keras3-1.0.0/keras3/man/loss_categorical_hinge.Rd                                   |    2 
 keras3-1.0.0/keras3/man/loss_cosine_similarity.Rd                                   |    2 
 keras3-1.0.0/keras3/man/loss_ctc.Rd                                                 |   48 
 keras3-1.0.0/keras3/man/loss_dice.Rd                                                |    2 
 keras3-1.0.0/keras3/man/loss_hinge.Rd                                               |    2 
 keras3-1.0.0/keras3/man/loss_huber.Rd                                               |    2 
 keras3-1.0.0/keras3/man/loss_kl_divergence.Rd                                       |    6 
 keras3-1.0.0/keras3/man/loss_log_cosh.Rd                                            |    2 
 keras3-1.0.0/keras3/man/loss_mean_absolute_error.Rd                                 |    2 
 keras3-1.0.0/keras3/man/loss_mean_absolute_percentage_error.Rd                      |    2 
 keras3-1.0.0/keras3/man/loss_mean_squared_error.Rd                                  |    2 
 keras3-1.0.0/keras3/man/loss_mean_squared_logarithmic_error.Rd                      |    2 
 keras3-1.0.0/keras3/man/loss_poisson.Rd                                             |    2 
 keras3-1.0.0/keras3/man/loss_sparse_categorical_crossentropy.Rd                     |    2 
 keras3-1.0.0/keras3/man/loss_squared_hinge.Rd                                       |    2 
 keras3-1.0.0/keras3/man/loss_tversky.Rd                                             |only
 keras3-1.0.0/keras3/man/metric_binary_crossentropy.Rd                               |    2 
 keras3-1.0.0/keras3/man/metric_binary_focal_crossentropy.Rd                         |    4 
 keras3-1.0.0/keras3/man/metric_categorical_crossentropy.Rd                          |    2 
 keras3-1.0.0/keras3/man/metric_categorical_focal_crossentropy.Rd                    |    2 
 keras3-1.0.0/keras3/man/metric_categorical_hinge.Rd                                 |    2 
 keras3-1.0.0/keras3/man/metric_hinge.Rd                                             |    2 
 keras3-1.0.0/keras3/man/metric_huber.Rd                                             |    2 
 keras3-1.0.0/keras3/man/metric_kl_divergence.Rd                                     |    6 
 keras3-1.0.0/keras3/man/metric_log_cosh.Rd                                          |    2 
 keras3-1.0.0/keras3/man/metric_mean_absolute_error.Rd                               |    2 
 keras3-1.0.0/keras3/man/metric_mean_absolute_percentage_error.Rd                    |    2 
 keras3-1.0.0/keras3/man/metric_mean_squared_error.Rd                                |    2 
 keras3-1.0.0/keras3/man/metric_mean_squared_logarithmic_error.Rd                    |    2 
 keras3-1.0.0/keras3/man/metric_poisson.Rd                                           |    2 
 keras3-1.0.0/keras3/man/metric_sparse_categorical_crossentropy.Rd                   |    2 
 keras3-1.0.0/keras3/man/metric_squared_hinge.Rd                                     |    2 
 keras3-1.0.0/keras3/man/normalize.Rd                                                |    2 
 keras3-1.0.0/keras3/man/op_abs.Rd                                                   |   10 
 keras3-1.0.0/keras3/man/op_add.Rd                                                   |   10 
 keras3-1.0.0/keras3/man/op_all.Rd                                                   |   12 
 keras3-1.0.0/keras3/man/op_any.Rd                                                   |   10 
 keras3-1.0.0/keras3/man/op_append.Rd                                                |   10 
 keras3-1.0.0/keras3/man/op_arange.Rd                                                |   12 
 keras3-1.0.0/keras3/man/op_arccos.Rd                                                |   10 
 keras3-1.0.0/keras3/man/op_arccosh.Rd                                               |   10 
 keras3-1.0.0/keras3/man/op_arcsin.Rd                                                |   10 
 keras3-1.0.0/keras3/man/op_arcsinh.Rd                                               |   10 
 keras3-1.0.0/keras3/man/op_arctan.Rd                                                |   10 
 keras3-1.0.0/keras3/man/op_arctan2.Rd                                               |   10 
 keras3-1.0.0/keras3/man/op_arctanh.Rd                                               |   10 
 keras3-1.0.0/keras3/man/op_argmax.Rd                                                |   15 
 keras3-1.0.0/keras3/man/op_argmin.Rd                                                |   15 
 keras3-1.0.0/keras3/man/op_argsort.Rd                                               |   10 
 keras3-1.0.0/keras3/man/op_array.Rd                                                 |   10 
 keras3-1.0.0/keras3/man/op_average.Rd                                               |   23 
 keras3-1.0.0/keras3/man/op_average_pool.Rd                                          |    8 
 keras3-1.0.0/keras3/man/op_batch_normalization.Rd                                   |    8 
 keras3-1.0.0/keras3/man/op_binary_crossentropy.Rd                                   |    8 
 keras3-1.0.0/keras3/man/op_bincount.Rd                                              |   10 
 keras3-1.0.0/keras3/man/op_broadcast_to.Rd                                          |   10 
 keras3-1.0.0/keras3/man/op_cast.Rd                                                  |    9 
 keras3-1.0.0/keras3/man/op_categorical_crossentropy.Rd                              |    8 
 keras3-1.0.0/keras3/man/op_ceil.Rd                                                  |   10 
 keras3-1.0.0/keras3/man/op_cholesky.Rd                                              |    9 
 keras3-1.0.0/keras3/man/op_clip.Rd                                                  |   10 
 keras3-1.0.0/keras3/man/op_concatenate.Rd                                           |   10 
 keras3-1.0.0/keras3/man/op_cond.Rd                                                  |    7 
 keras3-1.0.0/keras3/man/op_conj.Rd                                                  |   10 
 keras3-1.0.0/keras3/man/op_conv.Rd                                                  |    8 
 keras3-1.0.0/keras3/man/op_conv_transpose.Rd                                        |    8 
 keras3-1.0.0/keras3/man/op_convert_to_numpy.Rd                                      |    7 
 keras3-1.0.0/keras3/man/op_convert_to_tensor.Rd                                     |    7 
 keras3-1.0.0/keras3/man/op_copy.Rd                                                  |   10 
 keras3-1.0.0/keras3/man/op_correlate.Rd                                             |   10 
 keras3-1.0.0/keras3/man/op_cos.Rd                                                   |   10 
 keras3-1.0.0/keras3/man/op_cosh.Rd                                                  |   10 
 keras3-1.0.0/keras3/man/op_count_nonzero.Rd                                         |   10 
 keras3-1.0.0/keras3/man/op_cross.Rd                                                 |   10 
 keras3-1.0.0/keras3/man/op_ctc_decode.Rd                                            |only
 keras3-1.0.0/keras3/man/op_ctc_loss.Rd                                              |    8 
 keras3-1.0.0/keras3/man/op_cumprod.Rd                                               |   10 
 keras3-1.0.0/keras3/man/op_cumsum.Rd                                                |   10 
 keras3-1.0.0/keras3/man/op_custom_gradient.Rd                                       |    7 
 keras3-1.0.0/keras3/man/op_depthwise_conv.Rd                                        |    8 
 keras3-1.0.0/keras3/man/op_det.Rd                                                   |    9 
 keras3-1.0.0/keras3/man/op_diag.Rd                                                  |   10 
 keras3-1.0.0/keras3/man/op_diagonal.Rd                                              |   10 
 keras3-1.0.0/keras3/man/op_diff.Rd                                                  |   10 
 keras3-1.0.0/keras3/man/op_digitize.Rd                                              |   10 
 keras3-1.0.0/keras3/man/op_divide.Rd                                                |   16 
 keras3-1.0.0/keras3/man/op_divide_no_nan.Rd                                         |   10 
 keras3-1.0.0/keras3/man/op_dot.Rd                                                   |   10 
 keras3-1.0.0/keras3/man/op_eig.Rd                                                   |    9 
 keras3-1.0.0/keras3/man/op_eigh.Rd                                                  |only
 keras3-1.0.0/keras3/man/op_einsum.Rd                                                |   40 
 keras3-1.0.0/keras3/man/op_elu.Rd                                                   |    8 
 keras3-1.0.0/keras3/man/op_empty.Rd                                                 |   10 
 keras3-1.0.0/keras3/man/op_equal.Rd                                                 |   12 
 keras3-1.0.0/keras3/man/op_erf.Rd                                                   |    7 
 keras3-1.0.0/keras3/man/op_erfinv.Rd                                                |    7 
 keras3-1.0.0/keras3/man/op_exp.Rd                                                   |   10 
 keras3-1.0.0/keras3/man/op_expand_dims.Rd                                           |   10 
 keras3-1.0.0/keras3/man/op_expm1.Rd                                                 |   10 
 keras3-1.0.0/keras3/man/op_extract_sequences.Rd                                     |    7 
 keras3-1.0.0/keras3/man/op_eye.Rd                                                   |   10 
 keras3-1.0.0/keras3/man/op_fft.Rd                                                   |    7 
 keras3-1.0.0/keras3/man/op_fft2.Rd                                                  |    7 
 keras3-1.0.0/keras3/man/op_flip.Rd                                                  |   10 
 keras3-1.0.0/keras3/man/op_floor.Rd                                                 |   10 
 keras3-1.0.0/keras3/man/op_floor_divide.Rd                                          |   16 
 keras3-1.0.0/keras3/man/op_fori_loop.Rd                                             |    7 
 keras3-1.0.0/keras3/man/op_full.Rd                                                  |   10 
 keras3-1.0.0/keras3/man/op_full_like.Rd                                             |   10 
 keras3-1.0.0/keras3/man/op_gelu.Rd                                                  |    8 
 keras3-1.0.0/keras3/man/op_get_item.Rd                                              |   10 
 keras3-1.0.0/keras3/man/op_greater.Rd                                               |   12 
 keras3-1.0.0/keras3/man/op_greater_equal.Rd                                         |   12 
 keras3-1.0.0/keras3/man/op_hard_sigmoid.Rd                                          |    8 
 keras3-1.0.0/keras3/man/op_hard_silu.Rd                                             |    8 
 keras3-1.0.0/keras3/man/op_hstack.Rd                                                |   10 
 keras3-1.0.0/keras3/man/op_identity.Rd                                              |   10 
 keras3-1.0.0/keras3/man/op_imag.Rd                                                  |   10 
 keras3-1.0.0/keras3/man/op_image_affine_transform.Rd                                |    9 
 keras3-1.0.0/keras3/man/op_image_crop.Rd                                            |    9 
 keras3-1.0.0/keras3/man/op_image_extract_patches.Rd                                 |    9 
 keras3-1.0.0/keras3/man/op_image_map_coordinates.Rd                                 |    9 
 keras3-1.0.0/keras3/man/op_image_pad.Rd                                             |    9 
 keras3-1.0.0/keras3/man/op_image_resize.Rd                                          |   33 
 keras3-1.0.0/keras3/man/op_image_rgb_to_grayscale.Rd                                |only
 keras3-1.0.0/keras3/man/op_in_top_k.Rd                                              |    7 
 keras3-1.0.0/keras3/man/op_inv.Rd                                                   |    9 
 keras3-1.0.0/keras3/man/op_irfft.Rd                                                 |    7 
 keras3-1.0.0/keras3/man/op_is_tensor.Rd                                             |    7 
 keras3-1.0.0/keras3/man/op_isclose.Rd                                               |   10 
 keras3-1.0.0/keras3/man/op_isfinite.Rd                                              |   10 
 keras3-1.0.0/keras3/man/op_isinf.Rd                                                 |   10 
 keras3-1.0.0/keras3/man/op_isnan.Rd                                                 |   10 
 keras3-1.0.0/keras3/man/op_istft.Rd                                                 |    7 
 keras3-1.0.0/keras3/man/op_leaky_relu.Rd                                            |    8 
 keras3-1.0.0/keras3/man/op_less.Rd                                                  |   12 
 keras3-1.0.0/keras3/man/op_less_equal.Rd                                            |   12 
 keras3-1.0.0/keras3/man/op_linspace.Rd                                              |   12 
 keras3-1.0.0/keras3/man/op_log.Rd                                                   |   10 
 keras3-1.0.0/keras3/man/op_log10.Rd                                                 |   10 
 keras3-1.0.0/keras3/man/op_log1p.Rd                                                 |   10 
 keras3-1.0.0/keras3/man/op_log2.Rd                                                  |   10 
 keras3-1.0.0/keras3/man/op_log_sigmoid.Rd                                           |    8 
 keras3-1.0.0/keras3/man/op_log_softmax.Rd                                           |    8 
 keras3-1.0.0/keras3/man/op_logaddexp.Rd                                             |   10 
 keras3-1.0.0/keras3/man/op_logical_and.Rd                                           |   10 
 keras3-1.0.0/keras3/man/op_logical_not.Rd                                           |   10 
 keras3-1.0.0/keras3/man/op_logical_or.Rd                                            |   10 
 keras3-1.0.0/keras3/man/op_logical_xor.Rd                                           |   10 
 keras3-1.0.0/keras3/man/op_logspace.Rd                                              |   12 
 keras3-1.0.0/keras3/man/op_logsumexp.Rd                                             |    7 
 keras3-1.0.0/keras3/man/op_lu_factor.Rd                                             |    9 
 keras3-1.0.0/keras3/man/op_matmul.Rd                                                |   10 
 keras3-1.0.0/keras3/man/op_max.Rd                                                   |   14 
 keras3-1.0.0/keras3/man/op_max_pool.Rd                                              |    8 
 keras3-1.0.0/keras3/man/op_maximum.Rd                                               |   10 
 keras3-1.0.0/keras3/man/op_mean.Rd                                                  |   10 
 keras3-1.0.0/keras3/man/op_median.Rd                                                |   10 
 keras3-1.0.0/keras3/man/op_meshgrid.Rd                                              |   10 
 keras3-1.0.0/keras3/man/op_min.Rd                                                   |   14 
 keras3-1.0.0/keras3/man/op_minimum.Rd                                               |   10 
 keras3-1.0.0/keras3/man/op_mod.Rd                                                   |   16 
 keras3-1.0.0/keras3/man/op_moments.Rd                                               |    8 
 keras3-1.0.0/keras3/man/op_moveaxis.Rd                                              |   10 
 keras3-1.0.0/keras3/man/op_multi_hot.Rd                                             |    8 
 keras3-1.0.0/keras3/man/op_multiply.Rd                                              |   16 
 keras3-1.0.0/keras3/man/op_nan_to_num.Rd                                            |   41 
 keras3-1.0.0/keras3/man/op_ndim.Rd                                                  |   10 
 keras3-1.0.0/keras3/man/op_negative.Rd                                              |   16 
 keras3-1.0.0/keras3/man/op_nonzero.Rd                                               |   10 
 keras3-1.0.0/keras3/man/op_norm.Rd                                                  |    9 
 keras3-1.0.0/keras3/man/op_normalize.Rd                                             |    8 
 keras3-1.0.0/keras3/man/op_not_equal.Rd                                             |   12 
 keras3-1.0.0/keras3/man/op_one_hot.Rd                                               |    8 
 keras3-1.0.0/keras3/man/op_ones.Rd                                                  |   10 
 keras3-1.0.0/keras3/man/op_ones_like.Rd                                             |   10 
 keras3-1.0.0/keras3/man/op_outer.Rd                                                 |   10 
 keras3-1.0.0/keras3/man/op_pad.Rd                                                   |   10 
 keras3-1.0.0/keras3/man/op_power.Rd                                                 |   16 
 keras3-1.0.0/keras3/man/op_prod.Rd                                                  |   10 
 keras3-1.0.0/keras3/man/op_psnr.Rd                                                  |only
 keras3-1.0.0/keras3/man/op_qr.Rd                                                    |    7 
 keras3-1.0.0/keras3/man/op_quantile.Rd                                              |   10 
 keras3-1.0.0/keras3/man/op_ravel.Rd                                                 |   10 
 keras3-1.0.0/keras3/man/op_real.Rd                                                  |   10 
 keras3-1.0.0/keras3/man/op_reciprocal.Rd                                            |   10 
 keras3-1.0.0/keras3/man/op_relu.Rd                                                  |    8 
 keras3-1.0.0/keras3/man/op_relu6.Rd                                                 |    8 
 keras3-1.0.0/keras3/man/op_repeat.Rd                                                |   10 
 keras3-1.0.0/keras3/man/op_reshape.Rd                                               |   10 
 keras3-1.0.0/keras3/man/op_rfft.Rd                                                  |    7 
 keras3-1.0.0/keras3/man/op_roll.Rd                                                  |   10 
 keras3-1.0.0/keras3/man/op_round.Rd                                                 |   10 
 keras3-1.0.0/keras3/man/op_rsqrt.Rd                                                 |    7 
 keras3-1.0.0/keras3/man/op_scatter.Rd                                               |    7 
 keras3-1.0.0/keras3/man/op_scatter_update.Rd                                        |    7 
 keras3-1.0.0/keras3/man/op_segment_max.Rd                                           |    7 
 keras3-1.0.0/keras3/man/op_segment_sum.Rd                                           |    7 
 keras3-1.0.0/keras3/man/op_select.Rd                                                |only
 keras3-1.0.0/keras3/man/op_selu.Rd                                                  |    8 
 keras3-1.0.0/keras3/man/op_separable_conv.Rd                                        |    8 
 keras3-1.0.0/keras3/man/op_shape.Rd                                                 |    7 
 keras3-1.0.0/keras3/man/op_sigmoid.Rd                                               |    8 
 keras3-1.0.0/keras3/man/op_sign.Rd                                                  |   10 
 keras3-1.0.0/keras3/man/op_silu.Rd                                                  |    8 
 keras3-1.0.0/keras3/man/op_sin.Rd                                                   |   10 
 keras3-1.0.0/keras3/man/op_sinh.Rd                                                  |   10 
 keras3-1.0.0/keras3/man/op_size.Rd                                                  |   10 
 keras3-1.0.0/keras3/man/op_slice.Rd                                                 |   11 
 keras3-1.0.0/keras3/man/op_slice_update.Rd                                          |    7 
 keras3-1.0.0/keras3/man/op_slogdet.Rd                                               |only
 keras3-1.0.0/keras3/man/op_softmax.Rd                                               |    8 
 keras3-1.0.0/keras3/man/op_softplus.Rd                                              |    8 
 keras3-1.0.0/keras3/man/op_softsign.Rd                                              |    8 
 keras3-1.0.0/keras3/man/op_solve.Rd                                                 |    7 
 keras3-1.0.0/keras3/man/op_solve_triangular.Rd                                      |    9 
 keras3-1.0.0/keras3/man/op_sort.Rd                                                  |   10 
 keras3-1.0.0/keras3/man/op_sparse_categorical_crossentropy.Rd                       |    8 
 keras3-1.0.0/keras3/man/op_split.Rd                                                 |   10 
 keras3-1.0.0/keras3/man/op_sqrt.Rd                                                  |   10 
 keras3-1.0.0/keras3/man/op_square.Rd                                                |   10 
 keras3-1.0.0/keras3/man/op_squeeze.Rd                                               |   10 
 keras3-1.0.0/keras3/man/op_stack.Rd                                                 |   10 
 keras3-1.0.0/keras3/man/op_std.Rd                                                   |   10 
 keras3-1.0.0/keras3/man/op_stft.Rd                                                  |    7 
 keras3-1.0.0/keras3/man/op_stop_gradient.Rd                                         |    7 
 keras3-1.0.0/keras3/man/op_subtract.Rd                                              |   10 
 keras3-1.0.0/keras3/man/op_sum.Rd                                                   |   10 
 keras3-1.0.0/keras3/man/op_svd.Rd                                                   |    9 
 keras3-1.0.0/keras3/man/op_swapaxes.Rd                                              |   10 
 keras3-1.0.0/keras3/man/op_take.Rd                                                  |   10 
 keras3-1.0.0/keras3/man/op_take_along_axis.Rd                                       |   10 
 keras3-1.0.0/keras3/man/op_tan.Rd                                                   |   10 
 keras3-1.0.0/keras3/man/op_tanh.Rd                                                  |   10 
 keras3-1.0.0/keras3/man/op_tensordot.Rd                                             |   10 
 keras3-1.0.0/keras3/man/op_tile.Rd                                                  |   10 
 keras3-1.0.0/keras3/man/op_top_k.Rd                                                 |    7 
 keras3-1.0.0/keras3/man/op_trace.Rd                                                 |   10 
 keras3-1.0.0/keras3/man/op_transpose.Rd                                             |   10 
 keras3-1.0.0/keras3/man/op_tri.Rd                                                   |   10 
 keras3-1.0.0/keras3/man/op_tril.Rd                                                  |   10 
 keras3-1.0.0/keras3/man/op_triu.Rd                                                  |   10 
 keras3-1.0.0/keras3/man/op_unstack.Rd                                               |    7 
 keras3-1.0.0/keras3/man/op_var.Rd                                                   |   10 
 keras3-1.0.0/keras3/man/op_vdot.Rd                                                  |   10 
 keras3-1.0.0/keras3/man/op_vectorize.Rd                                             |only
 keras3-1.0.0/keras3/man/op_vectorized_map.Rd                                        |    7 
 keras3-1.0.0/keras3/man/op_vstack.Rd                                                |   10 
 keras3-1.0.0/keras3/man/op_where.Rd                                                 |   10 
 keras3-1.0.0/keras3/man/op_while_loop.Rd                                            |    7 
 keras3-1.0.0/keras3/man/op_zeros.Rd                                                 |   10 
 keras3-1.0.0/keras3/man/op_zeros_like.Rd                                            |   10 
 keras3-1.0.0/keras3/man/optimizer_rmsprop.Rd                                        |    2 
 keras3-1.0.0/keras3/man/pad_sequences.Rd                                            |    2 
 keras3-1.0.0/keras3/man/random_seed_generator.Rd                                    |    4 
 keras3-1.0.0/keras3/man/reexports.Rd                                                |    5 
 keras3-1.0.0/keras3/man/set_random_seed.Rd                                          |    2 
 keras3-1.0.0/keras3/man/shape.Rd                                                    |   17 
 keras3-1.0.0/keras3/man/split_dataset.Rd                                            |    2 
 keras3-1.0.0/keras3/man/text_dataset_from_directory.Rd                              |    2 
 keras3-1.0.0/keras3/man/timeseries_dataset_from_array.Rd                            |    2 
 keras3-1.0.0/keras3/man/to_categorical.Rd                                           |    2 
 keras3-1.0.0/keras3/man/zip_lists.Rd                                                |    6 
 keras3-1.0.0/keras3/tests/testthat/setup.R                                          |    2 
 keras3-1.0.0/keras3/tests/testthat/test-Layer.R                                     |    1 
 keras3-1.0.0/keras3/tests/testthat/test-generators.R                                |    3 
 keras3-1.0.0/keras3/tests/testthat/test-layer-text_vectorization.R                  |   15 
 keras3-1.0.0/keras3/tests/testthat/test-layers.R                                    |    1 
 keras3-1.0.0/keras3/tests/testthat/test-shape.R                                     |only
 keras3-1.0.0/keras3/vignettes/custom_train_step_in_tensorflow.Rmd                   |   38 
 keras3-1.0.0/keras3/vignettes/distributed_training_with_tensorflow.Rmd              |   26 
 keras3-1.0.0/keras3/vignettes/distribution.Rmd                                      |   38 
 keras3-1.0.0/keras3/vignettes/functional_api.Rmd                                    |  170 +-
 keras3-1.0.0/keras3/vignettes/functional_api/unnamed-chunk-11-1.png                 |binary
 keras3-1.0.0/keras3/vignettes/functional_api/unnamed-chunk-20-1.png                 |binary
 keras3-1.0.0/keras3/vignettes/functional_api/unnamed-chunk-25-1.png                 |binary
 keras3-1.0.0/keras3/vignettes/getting_started.Rmd                                   |   46 
 keras3-1.0.0/keras3/vignettes/getting_started/unnamed-chunk-12-1.png                |binary
 keras3-1.0.0/keras3/vignettes/intro_to_keras_for_engineers.Rmd                      |   68 
 keras3-1.0.0/keras3/vignettes/intro_to_keras_for_researchers.Rmd                    |    2 
 keras3-1.0.0/keras3/vignettes/making_new_layers_and_models_via_subclassing.Rmd      |   74 
 keras3-1.0.0/keras3/vignettes/sequential_model.Rmd                                  |   88 -
 keras3-1.0.0/keras3/vignettes/serialization_and_saving.Rmd                          |   71 
 keras3-1.0.0/keras3/vignettes/training_with_built_in_methods.Rmd                    |  202 +-
 keras3-1.0.0/keras3/vignettes/training_with_built_in_methods/unnamed-chunk-26-1.png |binary
 keras3-1.0.0/keras3/vignettes/transfer_learning.Rmd                                 |   72 
 keras3-1.0.0/keras3/vignettes/transfer_learning/unnamed-chunk-17-1.png              |binary
 keras3-1.0.0/keras3/vignettes/understanding_masking_and_padding.Rmd                 |   30 
 keras3-1.0.0/keras3/vignettes/writing_a_custom_training_loop_in_tensorflow.Rmd      |   98 -
 keras3-1.0.0/keras3/vignettes/writing_your_own_callbacks.Rmd                        |   22 
 395 files changed, 5000 insertions(+), 2316 deletions(-)

More information about keras3 at CRAN
Permanent link

Package EdSurvey updated to version 4.0.6 with previous version 4.0.4 dated 2023-10-27

Title: Analysis of NCES Education Survey and Assessment Data
Description: Read in and analyze functions for education survey and assessment data from the National Center for Education Statistics (NCES) <https://nces.ed.gov/>, including National Assessment of Educational Progress (NAEP) data <https://nces.ed.gov/nationsreportcard/> and data from the International Assessment Database: Organisation for Economic Co-operation and Development (OECD) <https://www.oecd.org/>, including Programme for International Student Assessment (PISA), Teaching and Learning International Survey (TALIS), Programme for the International Assessment of Adult Competencies (PIAAC), and International Association for the Evaluation of Educational Achievement (IEA) <https://www.iea.nl/>, including Trends in International Mathematics and Science Study (TIMSS), TIMSS Advanced, Progress in International Reading Literacy Study (PIRLS), International Civic and Citizenship Study (ICCS), International Computer and Information Literacy Study (ICILS), and Civic Education S [...truncated...]
Author: Paul Bailey [aut, cre] , Ahmad Emad [aut], Huade Huo [aut] , Michael Lee [aut] , Yuqi Liao [aut] , Alex Lishinski [aut] , Trang Nguyen [aut] , Qingshu Xie [aut], Jiao Yu [aut], Ting Zhang [aut] , Eric Buehler [aut] , Sun-joo Lee [aut], Blue Webb [aut [...truncated...]
Maintainer: Paul Bailey <pbailey@air.org>

Diff between EdSurvey versions 4.0.4 dated 2023-10-27 and 4.0.6 dated 2024-05-21

 EdSurvey-4.0.4/EdSurvey/inst/doc/introduction.R                     |only
 EdSurvey-4.0.4/EdSurvey/inst/mapproj                                |only
 EdSurvey-4.0.4/EdSurvey/tests/testthat/NHESlm1.rds                  |only
 EdSurvey-4.0.4/EdSurvey/tests/testthat/PISAedTable1.rds             |only
 EdSurvey-4.0.4/EdSurvey/tests/testthat/TIMSSes1Fin.rds              |only
 EdSurvey-4.0.4/EdSurvey/tests/testthat/TIMSSes1Fin4.rds             |only
 EdSurvey-4.0.4/EdSurvey/tests/testthat/TIMSSes1USA.rds              |only
 EdSurvey-4.0.4/EdSurvey/tests/testthat/TIMSSes1USA4.rds             |only
 EdSurvey-4.0.4/EdSurvey/tests/testthat/TIMSSgap3d_varest.rds        |only
 EdSurvey-4.0.4/EdSurvey/tests/testthat/TIMSSgap_AL1.rds             |only
 EdSurvey-4.0.4/EdSurvey/tests/testthat/TIMSSgap_main_percentile.rds |only
 EdSurvey-4.0.4/EdSurvey/tests/testthat/TIMSSgap_percentage1.rds     |only
 EdSurvey-4.0.4/EdSurvey/tests/testthat/TIMSSlm1.rds                 |only
 EdSurvey-4.0.4/EdSurvey/tests/testthat/TIMSSlm1_sum.rds             |only
 EdSurvey-4.0.4/EdSurvey/tests/testthat/TIMSSlm1t.rds                |only
 EdSurvey-4.0.4/EdSurvey/tests/testthat/TIMSSlm1t_sum.rds            |only
 EdSurvey-4.0.4/EdSurvey/tests/testthat/TIMSSpct1.rds                |only
 EdSurvey-4.0.4/EdSurvey/tests/testthat/corsdfESDFL_test1.rds        |only
 EdSurvey-4.0.4/EdSurvey/tests/testthat/edsurveyTableESDFL_test1.rds |only
 EdSurvey-4.0.4/EdSurvey/tests/testthat/edsurveyTableESDFL_test2.rds |only
 EdSurvey-4.0.4/EdSurvey/tests/testthat/es1.rds                      |only
 EdSurvey-4.0.4/EdSurvey/tests/testthat/es1recode.rds                |only
 EdSurvey-4.0.4/EdSurvey/tests/testthat/es1t.rds                     |only
 EdSurvey-4.0.4/EdSurvey/tests/testthat/es2.rds                      |only
 EdSurvey-4.0.4/EdSurvey/tests/testthat/es2b.rds                     |only
 EdSurvey-4.0.4/EdSurvey/tests/testthat/es2t.rds                     |only
 EdSurvey-4.0.4/EdSurvey/tests/testthat/es3.rds                      |only
 EdSurvey-4.0.4/EdSurvey/tests/testthat/es3t.rds                     |only
 EdSurvey-4.0.4/EdSurvey/tests/testthat/es4.rds                      |only
 EdSurvey-4.0.4/EdSurvey/tests/testthat/es4t.rds                     |only
 EdSurvey-4.0.4/EdSurvey/tests/testthat/es_lhs.rds                   |only
 EdSurvey-4.0.4/EdSurvey/tests/testthat/esdfl_print.rds              |only
 EdSurvey-4.0.4/EdSurvey/tests/testthat/lm1.rds                      |only
 EdSurvey-4.0.4/EdSurvey/tests/testthat/lm1t.ref                     |only
 EdSurvey-4.0.4/EdSurvey/tests/testthat/mmlTIMMS.rds                 |only
 EdSurvey-4.0.4/EdSurvey/tests/testthat/pct1simp.rds                 |only
 EdSurvey-4.0.4/EdSurvey/tests/testthat/pct1sym.rds                  |only
 EdSurvey-4.0.4/EdSurvey/tests/testthat/percentileESDFL_test1.rds    |only
 EdSurvey-4.0.4/EdSurvey/tests/testthat/pisa_1re_REF.rds             |only
 EdSurvey-4.0.4/EdSurvey/tests/testthat/regression.rds               |only
 EdSurvey-4.0.4/EdSurvey/tests/testthat/searchSDFLevels.rds          |only
 EdSurvey-4.0.4/EdSurvey/tests/testthat/searchSDFOr.rds              |only
 EdSurvey-4.0.4/EdSurvey/tests/testthat/searchSDFVector.rds          |only
 EdSurvey-4.0.4/EdSurvey/tests/testthat/slm1Scoef.rds                |only
 EdSurvey-4.0.4/EdSurvey/tests/testthat/summary_lm1f.rds             |only
 EdSurvey-4.0.4/EdSurvey/tests/testthat/tst-80-NHES.R                |only
 EdSurvey-4.0.4/EdSurvey/tests/testthat/tstHelper.R                  |only
 EdSurvey-4.0.6/EdSurvey/DESCRIPTION                                 |   14 
 EdSurvey-4.0.6/EdSurvey/MD5                                         |  642 -
 EdSurvey-4.0.6/EdSurvey/NAMESPACE                                   |   25 
 EdSurvey-4.0.6/EdSurvey/R/DoFCorrection.R                           |  202 
 EdSurvey-4.0.6/EdSurvey/R/achievementLevels.R                       |   23 
 EdSurvey-4.0.6/EdSurvey/R/all.R                                     |   62 
 EdSurvey-4.0.6/EdSurvey/R/as.data.frame.light.edsurvey.data.frame.R |   42 
 EdSurvey-4.0.6/EdSurvey/R/cacheMetaReqUpdate.R                      |  130 
 EdSurvey-4.0.6/EdSurvey/R/checkDataClass.R                          |   78 
 EdSurvey-4.0.6/EdSurvey/R/contourPlot.R                             |  194 
 EdSurvey-4.0.6/EdSurvey/R/copyDataToTemp.R                          |   58 
 EdSurvey-4.0.6/EdSurvey/R/cor.sdf.R                                 |   17 
 EdSurvey-4.0.6/EdSurvey/R/descriptionOfFile.R                       |  349 
 EdSurvey-4.0.6/EdSurvey/R/downloadECLS_K.R                          |    4 
 EdSurvey-4.0.6/EdSurvey/R/downloadELS.R                             |  260 
 EdSurvey-4.0.6/EdSurvey/R/downloadHSLS.R                            |  244 
 EdSurvey-4.0.6/EdSurvey/R/downloadICCS.R                            |  116 
 EdSurvey-4.0.6/EdSurvey/R/downloadICILS.R                           |  112 
 EdSurvey-4.0.6/EdSurvey/R/downloadNHES.R                            |  158 
 EdSurvey-4.0.6/EdSurvey/R/downloadPIAAC.R                           |  206 
 EdSurvey-4.0.6/EdSurvey/R/downloadPIRLS.R                           |    2 
 EdSurvey-4.0.6/EdSurvey/R/downloadPISA.R                            |  454 -
 EdSurvey-4.0.6/EdSurvey/R/downloadPISA_YAFS.R                       |   80 
 EdSurvey-4.0.6/EdSurvey/R/downloadSSOCS.R                           |  140 
 EdSurvey-4.0.6/EdSurvey/R/downloadTALIS.R                           |  224 
 EdSurvey-4.0.6/EdSurvey/R/downloadTIMSS.R                           |  316 
 EdSurvey-4.0.6/EdSurvey/R/downloadTIMSSAdv.R                        |  230 
 EdSurvey-4.0.6/EdSurvey/R/download_ePIRLS.R                         |  234 
 EdSurvey-4.0.6/EdSurvey/R/edsurvey-package.R                        |   70 
 EdSurvey-4.0.6/EdSurvey/R/edsurvey.data.frame.R                     | 1474 +--
 EdSurvey-4.0.6/EdSurvey/R/edsurvey.data.frame.list.R                |  522 -
 EdSurvey-4.0.6/EdSurvey/R/edsurveyTable.R                           |   27 
 EdSurvey-4.0.6/EdSurvey/R/edsurveyTable2pdf.R                       |  384 
 EdSurvey-4.0.6/EdSurvey/R/es_round.R                                |only
 EdSurvey-4.0.6/EdSurvey/R/gap.R                                     | 4417 +++++-----
 EdSurvey-4.0.6/EdSurvey/R/getAttributes.R                           |  108 
 EdSurvey-4.0.6/EdSurvey/R/getData.R                                 | 2070 ++--
 EdSurvey-4.0.6/EdSurvey/R/getItems.R                                |  166 
 EdSurvey-4.0.6/EdSurvey/R/glm.sdf.R                                 | 2160 ++--
 EdSurvey-4.0.6/EdSurvey/R/head.edsurvey.data.frame.R                |   22 
 EdSurvey-4.0.6/EdSurvey/R/itterateESDFL.R                           |   32 
 EdSurvey-4.0.6/EdSurvey/R/levelsSDF.R                               |  467 -
 EdSurvey-4.0.6/EdSurvey/R/lm.sdf.R                                  |   55 
 EdSurvey-4.0.6/EdSurvey/R/merge.sdf.R                               |  188 
 EdSurvey-4.0.6/EdSurvey/R/mergev.R                                  |    6 
 EdSurvey-4.0.6/EdSurvey/R/mixed.sdf.R                               |   21 
 EdSurvey-4.0.6/EdSurvey/R/mml.paramtabs.R                           |    2 
 EdSurvey-4.0.6/EdSurvey/R/mml.scoreNAEP.R                           |    6 
 EdSurvey-4.0.6/EdSurvey/R/mml.sdf.R                                 |    6 
 EdSurvey-4.0.6/EdSurvey/R/mml.sdf.helpers.R                         |  180 
 EdSurvey-4.0.6/EdSurvey/R/mvrlm.sdf.R                               | 2176 ++--
 EdSurvey-4.0.6/EdSurvey/R/nhesTable.R                               |  108 
 EdSurvey-4.0.6/EdSurvey/R/parseScript_SPSS.R                        | 1654 +--
 EdSurvey-4.0.6/EdSurvey/R/percentile.R                              | 1879 ++--
 EdSurvey-4.0.6/EdSurvey/R/predictGLM.R                              |   81 
 EdSurvey-4.0.6/EdSurvey/R/print.edsurvey.data.frame.R               |  258 
 EdSurvey-4.0.6/EdSurvey/R/rbind.light.edsurvey.data.frame.R         |    2 
 EdSurvey-4.0.6/EdSurvey/R/readBTLS.R                                |  396 
 EdSurvey-4.0.6/EdSurvey/R/readECLS_B.R                              |  874 -
 EdSurvey-4.0.6/EdSurvey/R/readECLS_K1998.R                          |  836 -
 EdSurvey-4.0.6/EdSurvey/R/readECLS_K2011.R                          | 1308 +-
 EdSurvey-4.0.6/EdSurvey/R/readELS.R                                 | 1018 +-
 EdSurvey-4.0.6/EdSurvey/R/readHSB_SO.R                              |  482 -
 EdSurvey-4.0.6/EdSurvey/R/readHSB_SR.R                              |  674 -
 EdSurvey-4.0.6/EdSurvey/R/readHSLS.R                                |  784 -
 EdSurvey-4.0.6/EdSurvey/R/readHSTS.R                                |    8 
 EdSurvey-4.0.6/EdSurvey/R/readICCS.R                                |   10 
 EdSurvey-4.0.6/EdSurvey/R/readICILS.R                               | 1604 +--
 EdSurvey-4.0.6/EdSurvey/R/readNAEP.r                                |   14 
 EdSurvey-4.0.6/EdSurvey/R/readNAEP_XML.R                            |    2 
 EdSurvey-4.0.6/EdSurvey/R/readNHES.R                                |  688 -
 EdSurvey-4.0.6/EdSurvey/R/readPIAAC.R                               | 1008 +-
 EdSurvey-4.0.6/EdSurvey/R/readPIRLS.R                               |   10 
 EdSurvey-4.0.6/EdSurvey/R/readPISA.R                                | 3774 ++++----
 EdSurvey-4.0.6/EdSurvey/R/readPISA_YAFS.R                           | 1068 +-
 EdSurvey-4.0.6/EdSurvey/R/readSSOCS.R                               |  762 -
 EdSurvey-4.0.6/EdSurvey/R/readTALIS.R                               | 1196 +-
 EdSurvey-4.0.6/EdSurvey/R/readTIMSS.R                               |   22 
 EdSurvey-4.0.6/EdSurvey/R/readTIMSSAdv.R                            |    6 
 EdSurvey-4.0.6/EdSurvey/R/readUTILS.R                               | 2530 ++---
 EdSurvey-4.0.6/EdSurvey/R/readUTILS_PRINT.R                         |  336 
 EdSurvey-4.0.6/EdSurvey/R/read_ePIRLS.R                             |    6 
 EdSurvey-4.0.6/EdSurvey/R/rebindAttributes.R                        |   96 
 EdSurvey-4.0.6/EdSurvey/R/recode.sdf.R                              |  332 
 EdSurvey-4.0.6/EdSurvey/R/rename.sdf.R                              |   28 
 EdSurvey-4.0.6/EdSurvey/R/rq.sdf.R                                  |   44 
 EdSurvey-4.0.6/EdSurvey/R/sameSurvey.R                              |   58 
 EdSurvey-4.0.6/EdSurvey/R/searchSDF.R                               |  376 
 EdSurvey-4.0.6/EdSurvey/R/setAttributes.R                           |   72 
 EdSurvey-4.0.6/EdSurvey/R/showCodebook.R                            |    4 
 EdSurvey-4.0.6/EdSurvey/R/showCutPoints.R                           |   70 
 EdSurvey-4.0.6/EdSurvey/R/showPlausibleValues.R                     |  388 
 EdSurvey-4.0.6/EdSurvey/R/showWeights.R                             |  220 
 EdSurvey-4.0.6/EdSurvey/R/subset.edsurvey.data.frame.list.R         |    2 
 EdSurvey-4.0.6/EdSurvey/R/subset.light.edsurvey.data.frame.R        |  108 
 EdSurvey-4.0.6/EdSurvey/R/suggestWeights.R                          |  536 -
 EdSurvey-4.0.6/EdSurvey/R/summary2.R                                |    7 
 EdSurvey-4.0.6/EdSurvey/R/testthat-helpers.R                        |   26 
 EdSurvey-4.0.6/EdSurvey/R/utilities.R                               |  948 +-
 EdSurvey-4.0.6/EdSurvey/R/varEstToCov.R                             |  230 
 EdSurvey-4.0.6/EdSurvey/R/waldTest.R                                |  477 -
 EdSurvey-4.0.6/EdSurvey/R/zzz.R                                     |   41 
 EdSurvey-4.0.6/EdSurvey/build/vignette.rds                          |binary
 EdSurvey-4.0.6/EdSurvey/inst/NEWS.Rd                                |   23 
 EdSurvey-4.0.6/EdSurvey/inst/doc/introduction.Rmd                   |   85 
 EdSurvey-4.0.6/EdSurvey/inst/doc/introduction.html                  |  151 
 EdSurvey-4.0.6/EdSurvey/inst/extdata/PISAal.rds                     |binary
 EdSurvey-4.0.6/EdSurvey/man/DoFCorrection.Rd                        |    7 
 EdSurvey-4.0.6/EdSurvey/man/EdSurvey-package.Rd                     |   38 
 EdSurvey-4.0.6/EdSurvey/man/SD.Rd                                   |    4 
 EdSurvey-4.0.6/EdSurvey/man/achievementLevels.Rd                    |    2 
 EdSurvey-4.0.6/EdSurvey/man/contourPlot.Rd                          |    4 
 EdSurvey-4.0.6/EdSurvey/man/cor.sdf.Rd                              |    2 
 EdSurvey-4.0.6/EdSurvey/man/edsurvey-class.Rd                       |   12 
 EdSurvey-4.0.6/EdSurvey/man/edsurvey.data.frame.list.Rd             |   20 
 EdSurvey-4.0.6/EdSurvey/man/edsurveyTable.Rd                        |   18 
 EdSurvey-4.0.6/EdSurvey/man/edsurveyTable2pdf.Rd                    |   50 
 EdSurvey-4.0.6/EdSurvey/man/es_round.Rd                             |only
 EdSurvey-4.0.6/EdSurvey/man/examples/DoFCorrection.R                |    7 
 EdSurvey-4.0.6/EdSurvey/man/examples/SD.R                           |    4 
 EdSurvey-4.0.6/EdSurvey/man/examples/achievementLevels.R            |    2 
 EdSurvey-4.0.6/EdSurvey/man/examples/contourPlot.R                  |    4 
 EdSurvey-4.0.6/EdSurvey/man/examples/cor.sdf.R                      |    2 
 EdSurvey-4.0.6/EdSurvey/man/examples/edsurvey-class.R               |   12 
 EdSurvey-4.0.6/EdSurvey/man/examples/edsurvey.data.frame.list.R     |   20 
 EdSurvey-4.0.6/EdSurvey/man/examples/edsurveyTable.R                |   18 
 EdSurvey-4.0.6/EdSurvey/man/examples/edsurveyTable2pdf.R            |   50 
 EdSurvey-4.0.6/EdSurvey/man/examples/es_round.R                     |only
 EdSurvey-4.0.6/EdSurvey/man/examples/gap.R                          |   36 
 EdSurvey-4.0.6/EdSurvey/man/examples/getAllItems.R                  |   28 
 EdSurvey-4.0.6/EdSurvey/man/examples/getData.R                      |   12 
 EdSurvey-4.0.6/EdSurvey/man/examples/getPlausibleValue.R            |    2 
 EdSurvey-4.0.6/EdSurvey/man/examples/getWeightJkReplicates.R        |    2 
 EdSurvey-4.0.6/EdSurvey/man/examples/glm.sdf.R                      |   12 
 EdSurvey-4.0.6/EdSurvey/man/examples/hasPlausibleValue.R            |    2 
 EdSurvey-4.0.6/EdSurvey/man/examples/isWeight.R                     |    2 
 EdSurvey-4.0.6/EdSurvey/man/examples/levelsSDF.R                    |    2 
 EdSurvey-4.0.6/EdSurvey/man/examples/lm.sdf.R                       |   10 
 EdSurvey-4.0.6/EdSurvey/man/examples/merge.edsurvey.data.frame.R    |    2 
 EdSurvey-4.0.6/EdSurvey/man/examples/mixed.sdf.R                    |    6 
 EdSurvey-4.0.6/EdSurvey/man/examples/mml.sdf.R                      |    8 
 EdSurvey-4.0.6/EdSurvey/man/examples/mvrlm.sdf.R                    |   17 
 EdSurvey-4.0.6/EdSurvey/man/examples/nrow.edsurvey.data.frame.R     |   12 
 EdSurvey-4.0.6/EdSurvey/man/examples/oddsRatio.R                    |    8 
 EdSurvey-4.0.6/EdSurvey/man/examples/percentile.R                   |   12 
 EdSurvey-4.0.6/EdSurvey/man/examples/readECLS_K1998.R               |    2 
 EdSurvey-4.0.6/EdSurvey/man/examples/readECLS_K2011.R               |    2 
 EdSurvey-4.0.6/EdSurvey/man/examples/readELS.R                      |    2 
 EdSurvey-4.0.6/EdSurvey/man/examples/readICCS.R                     |    4 
 EdSurvey-4.0.6/EdSurvey/man/examples/readICILS.R                    |    4 
 EdSurvey-4.0.6/EdSurvey/man/examples/readNAEP.R                     |    2 
 EdSurvey-4.0.6/EdSurvey/man/examples/readNHES.R                     |    2 
 EdSurvey-4.0.6/EdSurvey/man/examples/readPIAAC.R                    |    4 
 EdSurvey-4.0.6/EdSurvey/man/examples/readPIRLS.R                    |    4 
 EdSurvey-4.0.6/EdSurvey/man/examples/readPISA.R                     |    2 
 EdSurvey-4.0.6/EdSurvey/man/examples/readSSOCS.R                    |    2 
 EdSurvey-4.0.6/EdSurvey/man/examples/readTALIS.R                    |    4 
 EdSurvey-4.0.6/EdSurvey/man/examples/readTIMSS.R                    |    8 
 EdSurvey-4.0.6/EdSurvey/man/examples/readTIMSSAdv.R                 |    4 
 EdSurvey-4.0.6/EdSurvey/man/examples/read_ePIRLS.R                  |    4 
 EdSurvey-4.0.6/EdSurvey/man/examples/rebindAttributes.R             |    8 
 EdSurvey-4.0.6/EdSurvey/man/examples/recode.sdf.R                   |    2 
 EdSurvey-4.0.6/EdSurvey/man/examples/rename.sdf.R                   |   10 
 EdSurvey-4.0.6/EdSurvey/man/examples/rq.sdf.R                       |    4 
 EdSurvey-4.0.6/EdSurvey/man/examples/searchSDF.R                    |    2 
 EdSurvey-4.0.6/EdSurvey/man/examples/setNAEPScoreCard.R             |    4 
 EdSurvey-4.0.6/EdSurvey/man/examples/showCodebook.R                 |   10 
 EdSurvey-4.0.6/EdSurvey/man/examples/showCutPoints.R                |    2 
 EdSurvey-4.0.6/EdSurvey/man/examples/showPlausibleValues.R          |    2 
 EdSurvey-4.0.6/EdSurvey/man/examples/showWeights.R                  |    4 
 EdSurvey-4.0.6/EdSurvey/man/examples/subset.edsurvey.data.frame.R   |   12 
 EdSurvey-4.0.6/EdSurvey/man/examples/suggestWeights.R               |    6 
 EdSurvey-4.0.6/EdSurvey/man/examples/summary2.R                     |   10 
 EdSurvey-4.0.6/EdSurvey/man/examples/updatePlausibleValue.R         |   10 
 EdSurvey-4.0.6/EdSurvey/man/examples/varEstToCov.R                  |    9 
 EdSurvey-4.0.6/EdSurvey/man/examples/waldTest.R                     |    6 
 EdSurvey-4.0.6/EdSurvey/man/gap.Rd                                  |   36 
 EdSurvey-4.0.6/EdSurvey/man/getAllItems.Rd                          |   28 
 EdSurvey-4.0.6/EdSurvey/man/getData.Rd                              |   12 
 EdSurvey-4.0.6/EdSurvey/man/getPlausibleValue.Rd                    |    2 
 EdSurvey-4.0.6/EdSurvey/man/getWeightJkReplicates.Rd                |    2 
 EdSurvey-4.0.6/EdSurvey/man/glm.sdf.Rd                              |   23 
 EdSurvey-4.0.6/EdSurvey/man/hasPlausibleValue.Rd                    |    2 
 EdSurvey-4.0.6/EdSurvey/man/isWeight.Rd                             |    2 
 EdSurvey-4.0.6/EdSurvey/man/levelsSDF.Rd                            |    2 
 EdSurvey-4.0.6/EdSurvey/man/lm.sdf.Rd                               |   10 
 EdSurvey-4.0.6/EdSurvey/man/merge.edsurvey.data.Rd                  |    2 
 EdSurvey-4.0.6/EdSurvey/man/mixed.sdf.Rd                            |    6 
 EdSurvey-4.0.6/EdSurvey/man/mml.sdf.Rd                              |    8 
 EdSurvey-4.0.6/EdSurvey/man/mvrlm.sdf.Rd                            |   17 
 EdSurvey-4.0.6/EdSurvey/man/percentile.Rd                           |   12 
 EdSurvey-4.0.6/EdSurvey/man/print.achievementLevels.Rd              |   11 
 EdSurvey-4.0.6/EdSurvey/man/print.edsurvey.data.frame.Rd            |   12 
 EdSurvey-4.0.6/EdSurvey/man/printGap.Rd                             |    9 
 EdSurvey-4.0.6/EdSurvey/man/readBTLS.Rd                             |   94 
 EdSurvey-4.0.6/EdSurvey/man/readCivEDICCS.Rd                        |    4 
 EdSurvey-4.0.6/EdSurvey/man/readECLS_K1998.Rd                       |    2 
 EdSurvey-4.0.6/EdSurvey/man/readECLS_K2011.Rd                       |    2 
 EdSurvey-4.0.6/EdSurvey/man/readELS.Rd                              |    2 
 EdSurvey-4.0.6/EdSurvey/man/readICILS.Rd                            |    6 
 EdSurvey-4.0.6/EdSurvey/man/readNAEP.Rd                             |    2 
 EdSurvey-4.0.6/EdSurvey/man/readNHES.Rd                             |    2 
 EdSurvey-4.0.6/EdSurvey/man/readPIAAC.Rd                            |    4 
 EdSurvey-4.0.6/EdSurvey/man/readPIRLS.Rd                            |    4 
 EdSurvey-4.0.6/EdSurvey/man/readPISA.Rd                             |    2 
 EdSurvey-4.0.6/EdSurvey/man/readSSOCS.Rd                            |    2 
 EdSurvey-4.0.6/EdSurvey/man/readTALIS.Rd                            |    4 
 EdSurvey-4.0.6/EdSurvey/man/readTIMSS.Rd                            |    8 
 EdSurvey-4.0.6/EdSurvey/man/readTIMSSAdv.Rd                         |    4 
 EdSurvey-4.0.6/EdSurvey/man/read_ePIRLS.Rd                          |    4 
 EdSurvey-4.0.6/EdSurvey/man/rebindAttributes.Rd                     |    8 
 EdSurvey-4.0.6/EdSurvey/man/recode.sdf.Rd                           |    2 
 EdSurvey-4.0.6/EdSurvey/man/rename.sdf.Rd                           |   10 
 EdSurvey-4.0.6/EdSurvey/man/roundNCES.Rd                            |only
 EdSurvey-4.0.6/EdSurvey/man/roundn.Rd                               |only
 EdSurvey-4.0.6/EdSurvey/man/rq.sdf.Rd                               |    4 
 EdSurvey-4.0.6/EdSurvey/man/searchSDF.Rd                            |    2 
 EdSurvey-4.0.6/EdSurvey/man/setNAEPScoreCard.Rd                     |    4 
 EdSurvey-4.0.6/EdSurvey/man/showCodebook.Rd                         |   10 
 EdSurvey-4.0.6/EdSurvey/man/showCutPoints.Rd                        |    2 
 EdSurvey-4.0.6/EdSurvey/man/showPlausibleValues.Rd                  |    2 
 EdSurvey-4.0.6/EdSurvey/man/showWeights.Rd                          |    4 
 EdSurvey-4.0.6/EdSurvey/man/suggestWeights.Rd                       |    6 
 EdSurvey-4.0.6/EdSurvey/man/summary2.Rd                             |   10 
 EdSurvey-4.0.6/EdSurvey/man/updatePlausibleValue.Rd                 |   10 
 EdSurvey-4.0.6/EdSurvey/man/varEstToCov.Rd                          |    9 
 EdSurvey-4.0.6/EdSurvey/man/waldTest.Rd                             |    6 
 EdSurvey-4.0.6/EdSurvey/tests/testthat/PISAgd0.rds                  |binary
 EdSurvey-4.0.6/EdSurvey/tests/testthat/PISAgd1.rds                  |binary
 EdSurvey-4.0.6/EdSurvey/tests/testthat/PISAgd2.rds                  |binary
 EdSurvey-4.0.6/EdSurvey/tests/testthat/PISAgd3.rds                  |binary
 EdSurvey-4.0.6/EdSurvey/tests/testthat/PISAgd4.rds                  |binary
 EdSurvey-4.0.6/EdSurvey/tests/testthat/REF-0-main.R                 |  381 
 EdSurvey-4.0.6/EdSurvey/tests/testthat/REF-13-MVRLM.R               |only
 EdSurvey-4.0.6/EdSurvey/tests/testthat/REF-3-TIMSS.R                |   35 
 EdSurvey-4.0.6/EdSurvey/tests/testthat/REF-4-pisa.R                 |   18 
 EdSurvey-4.0.6/EdSurvey/tests/testthat/TIMSSgd1.rds                 |binary
 EdSurvey-4.0.6/EdSurvey/tests/testthat/TIMSSgd2.rds                 |binary
 EdSurvey-4.0.6/EdSurvey/tests/testthat/TIMSSgd3.rds                 |binary
 EdSurvey-4.0.6/EdSurvey/tests/testthat/aLevels_test1.rds            |binary
 EdSurvey-4.0.6/EdSurvey/tests/testthat/aLevels_test2.rds            |binary
 EdSurvey-4.0.6/EdSurvey/tests/testthat/aLevels_test3.rds            |binary
 EdSurvey-4.0.6/EdSurvey/tests/testthat/aLevels_test4.rds            |binary
 EdSurvey-4.0.6/EdSurvey/tests/testthat/aLevels_test5.rds            |binary
 EdSurvey-4.0.6/EdSurvey/tests/testthat/aLevels_test6.rds            |binary
 EdSurvey-4.0.6/EdSurvey/tests/testthat/aLevels_test7.rds            |binary
 EdSurvey-4.0.6/EdSurvey/tests/testthat/aLevels_test8.rds            |binary
 EdSurvey-4.0.6/EdSurvey/tests/testthat/aLevels_test9.rds            |binary
 EdSurvey-4.0.6/EdSurvey/tests/testthat/aLevels_varest.rds           |binary
 EdSurvey-4.0.6/EdSurvey/tests/testthat/df2.rds                      |binary
 EdSurvey-4.0.6/EdSurvey/tests/testthat/est_varest.rds               |binary
 EdSurvey-4.0.6/EdSurvey/tests/testthat/est_varest_recode.rds        |binary
 EdSurvey-4.0.6/EdSurvey/tests/testthat/gap1_varest.rds              |binary
 EdSurvey-4.0.6/EdSurvey/tests/testthat/gap2_varest.rds              |binary
 EdSurvey-4.0.6/EdSurvey/tests/testthat/gap3_varest.rds              |binary
 EdSurvey-4.0.6/EdSurvey/tests/testthat/gap3d_varest.rds             |binary
 EdSurvey-4.0.6/EdSurvey/tests/testthat/gap4_varest.rds              |binary
 EdSurvey-4.0.6/EdSurvey/tests/testthat/gap_AL1.rds                  |binary
 EdSurvey-4.0.6/EdSurvey/tests/testthat/gap_AL2.rds                  |binary
 EdSurvey-4.0.6/EdSurvey/tests/testthat/gap_esdfl_al.rds             |binary
 EdSurvey-4.0.6/EdSurvey/tests/testthat/gap_esdfl_mean.rds           |binary
 EdSurvey-4.0.6/EdSurvey/tests/testthat/gap_esdfl_pct.rds            |binary
 EdSurvey-4.0.6/EdSurvey/tests/testthat/gap_esdfl_perct.rds          |binary
 EdSurvey-4.0.6/EdSurvey/tests/testthat/gap_main_SD.rds              |binary
 EdSurvey-4.0.6/EdSurvey/tests/testthat/gap_main_mean.rds            |binary
 EdSurvey-4.0.6/EdSurvey/tests/testthat/gap_main_percentile.rds      |binary
 EdSurvey-4.0.6/EdSurvey/tests/testthat/gap_percentage1.rds          |binary
 EdSurvey-4.0.6/EdSurvey/tests/testthat/gap_percentage2.rds          |binary
 EdSurvey-4.0.6/EdSurvey/tests/testthat/gd1.rds                      |binary
 EdSurvey-4.0.6/EdSurvey/tests/testthat/gd2.rds                      |binary
 EdSurvey-4.0.6/EdSurvey/tests/testthat/gd3.rds                      |binary
 EdSurvey-4.0.6/EdSurvey/tests/testthat/gd4.rds                      |binary
 EdSurvey-4.0.6/EdSurvey/tests/testthat/gd5.rds                      |binary
 EdSurvey-4.0.6/EdSurvey/tests/testthat/gd6.rds                      |binary
 EdSurvey-4.0.6/EdSurvey/tests/testthat/gd7.rds                      |binary
 EdSurvey-4.0.6/EdSurvey/tests/testthat/gd8.rds                      |binary
 EdSurvey-4.0.6/EdSurvey/tests/testthat/gddat.rds                    |binary
 EdSurvey-4.0.6/EdSurvey/tests/testthat/lm1f.rds                     |only
 EdSurvey-4.0.6/EdSurvey/tests/testthat/lm1re.rds                    |binary
 EdSurvey-4.0.6/EdSurvey/tests/testthat/lm1t.rds                     |binary
 EdSurvey-4.0.6/EdSurvey/tests/testthat/lm2.rds                      |binary
 EdSurvey-4.0.6/EdSurvey/tests/testthat/lm2t.rds                     |binary
 EdSurvey-4.0.6/EdSurvey/tests/testthat/lm_varest.rds                |binary
 EdSurvey-4.0.6/EdSurvey/tests/testthat/pct1.rds                     |binary
 EdSurvey-4.0.6/EdSurvey/tests/testthat/pct2.rds                     |binary
 EdSurvey-4.0.6/EdSurvey/tests/testthat/pct3.rds                     |binary
 EdSurvey-4.0.6/EdSurvey/tests/testthat/pct_varest.rds               |binary
 EdSurvey-4.0.6/EdSurvey/tests/testthat/showCodebook.rds             |binary
 EdSurvey-4.0.6/EdSurvey/tests/testthat/showCodebookRecodes.rds      |binary
 EdSurvey-4.0.6/EdSurvey/tests/testthat/test-10-main.R               |   78 
 EdSurvey-4.0.6/EdSurvey/tests/testthat/test-12-Dire.R               |only
 EdSurvey-4.0.6/EdSurvey/tests/testthat/test-15-lesdf.R              |   68 
 EdSurvey-4.0.6/EdSurvey/tests/testthat/test-22-mvrlm.R              |   30 
 EdSurvey-4.0.6/EdSurvey/tests/testthat/test-25-mixed.R              |    6 
 EdSurvey-4.0.6/EdSurvey/tests/testthat/test-30-TIMSS.R              |   42 
 EdSurvey-4.0.6/EdSurvey/tests/testthat/test-35-piaac.R              |    2 
 EdSurvey-4.0.6/EdSurvey/tests/testthat/test-40-ELS.R                |    6 
 EdSurvey-4.0.6/EdSurvey/tests/testthat/test-45-HSLS.R               |    6 
 EdSurvey-4.0.6/EdSurvey/tests/testthat/test-50-pisa.R               |   31 
 EdSurvey-4.0.6/EdSurvey/tests/testthat/test-60-ECLS_K.R             |    4 
 EdSurvey-4.0.6/EdSurvey/tests/testthat/test-65-SSOCS.R              |    4 
 EdSurvey-4.0.6/EdSurvey/vignettes/introduction.Rmd                  |   85 
 349 files changed, 24571 insertions(+), 24151 deletions(-)

More information about EdSurvey at CRAN
Permanent link

Package fsemipar updated to version 1.1.1 with previous version 1.1.0 dated 2024-04-27

Title: Estimation, Variable Selection and Prediction for Functional Semiparametric Models
Description: Routines for the estimation or simultaneous estimation and variable selection in several functional semiparametric models with scalar responses are provided. These models include the functional single-index model, the semi-functional partial linear model, and the semi-functional partial linear single-index model. Additionally, the package offers algorithms for handling scalar covariates with linear effects that originate from the discretization of a curve. This functionality is applicable in the context of the linear model, the multi-functional partial linear model, and the multi-functional partial linear single-index model.
Author: German Aneiros [aut], Silvia Novo [aut, cre]
Maintainer: Silvia Novo <snovo@est-econ.uc3m.es>

Diff between fsemipar versions 1.1.0 dated 2024-04-27 and 1.1.1 dated 2024-05-21

 DESCRIPTION       |    8 ++++----
 MD5               |    4 ++--
 build/partial.rdb |binary
 3 files changed, 6 insertions(+), 6 deletions(-)

More information about fsemipar at CRAN
Permanent link

Package ClustBlock updated to version 4.0.0 with previous version 3.2.0 dated 2023-08-30

Title: Clustering of Datasets
Description: Hierarchical and partitioning algorithms to cluster blocks of variables. The partitioning algorithm includes an option called noise cluster to set aside atypical blocks of variables. The CLUSTATIS method (for quantitative blocks) (Llobell, Cariou, Vigneau, Labenne & Qannari (2020) <doi:10.1016/j.foodqual.2018.05.013>, Llobell, Vigneau & Qannari (2019) <doi:10.1016/j.foodqual.2019.02.017>) and the CLUSCATA method (for Check-All-That-Apply data) (Llobell, Cariou, Vigneau, Labenne & Qannari (2019) <doi:10.1016/j.foodqual.2018.09.006>, Llobell, Giacalone, Labenne & Qannari (2019) <doi:10.1016/j.foodqual.2019.05.017>) are the core of this package. The CATATIS methods allows to compute some indices and tests to control the quality of CATA data. Multivariate analysis and clustering of subjects for quantitative multiblock data, CATA, RATA, Free Sorting and JAR experiments are available. Clustering of rows in multi-block context (notably with ClusMB stra [...truncated...]
Author: Fabien Llobell [aut, cre] , Evelyne Vigneau [ctb] , Veronique Cariou [ctb] , El Mostafa Qannari [ctb]
Maintainer: Fabien Llobell <fabienllobellresearch@gmail.com>

Diff between ClustBlock versions 3.2.0 dated 2023-08-30 and 4.0.0 dated 2024-05-21

 DESCRIPTION                  |   14 +++----
 MD5                          |   44 ++++++++++++++---------
 NAMESPACE                    |    9 ++++
 NEWS                         |    7 ++-
 R/ClusMB.R                   |only
 R/cluscata.R                 |   79 ++++++++++++++++++++++++-----------------
 R/cluscata_jar.R             |   12 +++---
 R/cluscata_rata.R            |only
 R/clustRowsOnStatisAxes.R    |only
 R/clustatis.R                |   82 ++++++++++++++++++++++++-------------------
 R/clustatis_FreeSort.R       |   15 ++++---
 R/indicesclusters.R          |only
 R/print.clusRows.R           |only
 R/simil_groups_cata.R        |    4 +-
 R/summary.catatis.R          |    2 -
 R/summary.clusRows.R         |only
 inst/CITATION                |    6 +--
 man/ClusMB.Rd                |only
 man/ClustBlock-package.Rd    |    9 ++--
 man/cluscata.Rd              |   13 +++++-
 man/cluscata_jar.Rd          |    6 ++-
 man/cluscata_rata.Rd         |only
 man/clustRowsOnStatisAxes.Rd |only
 man/clustatis.Rd             |   13 ++++--
 man/clustatis_FreeSort.Rd    |    8 ++--
 man/indicesClusters.Rd       |only
 man/print.clusRows.Rd        |only
 man/simil_groups_cata.Rd     |    4 +-
 man/summary.clusRows.Rd      |only
 29 files changed, 197 insertions(+), 130 deletions(-)

More information about ClustBlock at CRAN
Permanent link

Package StepReg updated to version 1.5.1 with previous version 1.5.0 dated 2024-03-21

Title: Stepwise Regression Analysis
Description: The stepwise regression analysis is a statistical technique used to identify a subset of predictor variables essential for constructing predictive models. This package performs stepwise regression analysis across various regression models such as linear, logistic, Cox proportional hazards, Poisson, Gamma, and negative binomial regression. It incorporates diverse stepwise regression algorithms like forward selection, backward elimination, and bidirectional elimination alongside the best subset method. Additionally, it offers a wide range of selection criteria, including Akaike Information Criterion (AIC), Sawa Bayesian Information Criterion (BIC), and Significance Levels (SL). We validated the output accuracy of StepReg using public datasets within the SAS software environment. To facilitate efficient model comparison and selection, StepReg allows for multiple strategies and selection metrics to be executed in a single function call. Moreover, StepReg integrates a Shiny application for [...truncated...]
Author: Junhui Li [cre] , Junhui Li [aut] , Kai Hu [aut], Xiaohuan Lu [aut], Kun Cheng [ctb], Sushmita Nayak [ctb], Cesar Bautista Sotelo [ctb], Michael Lodato [ctb], Robert H Brown [ctb], Wenxin Liu [aut], Lihua Julie Zhu [aut]
Maintainer: Junhui Li <junhui.li11@umassmed.edu>

Diff between StepReg versions 1.5.0 dated 2024-03-21 and 1.5.1 dated 2024-05-21

 StepReg-1.5.0/StepReg/R/zzz.R                                                     |only
 StepReg-1.5.1/StepReg/DESCRIPTION                                                 |   18 
 StepReg-1.5.1/StepReg/MD5                                                         |   57 -
 StepReg-1.5.1/StepReg/NAMESPACE                                                   |   15 
 StepReg-1.5.1/StepReg/R/StepRegShinyApp.R                                         |    8 
 StepReg-1.5.1/StepReg/R/plot.StepReg.R                                            |  212 +++-
 StepReg-1.5.1/StepReg/R/print.StepReg.R                                           |   21 
 StepReg-1.5.1/StepReg/R/report.R                                                  |   38 
 StepReg-1.5.1/StepReg/R/stepwise.R                                                |   81 -
 StepReg-1.5.1/StepReg/R/stepwiseUtils.R                                           |  249 +++--
 StepReg-1.5.1/StepReg/R/validateUtils.R                                           |   23 
 StepReg-1.5.1/StepReg/R/vote.R                                                    |only
 StepReg-1.5.1/StepReg/build/vignette.rds                                          |binary
 StepReg-1.5.1/StepReg/inst/doc/StepReg.R                                          |   13 
 StepReg-1.5.1/StepReg/inst/doc/StepReg.Rmd                                        |   25 
 StepReg-1.5.1/StepReg/inst/doc/StepReg.html                                       |  478 +++++-----
 StepReg-1.5.1/StepReg/inst/shiny/report.Rmd                                       |   27 
 StepReg-1.5.1/StepReg/inst/shiny/rsconnect/shinyapps.io/junhuiliumass/StepReg.dcf |    2 
 StepReg-1.5.1/StepReg/inst/shiny/server.R                                         |  345 +++++--
 StepReg-1.5.1/StepReg/inst/shiny/ui.R                                             |  278 ++++-
 StepReg-1.5.1/StepReg/inst/shiny/utils.R                                          |   27 
 StepReg-1.5.1/StepReg/man/StepReg-package.Rd                                      |    2 
 StepReg-1.5.1/StepReg/man/StepRegShinyApp.Rd                                      |    2 
 StepReg-1.5.1/StepReg/man/plot.StepReg.Rd                                         |   19 
 StepReg-1.5.1/StepReg/man/print.StepReg.Rd                                        |    4 
 StepReg-1.5.1/StepReg/man/report.Rd                                               |    4 
 StepReg-1.5.1/StepReg/man/stepwise.Rd                                             |    8 
 StepReg-1.5.1/StepReg/man/vote.Rd                                                 |only
 StepReg-1.5.1/StepReg/vignettes/StepReg.Rmd                                       |   25 
 StepReg-1.5.1/StepReg/vignettes/src/StepReg_shiny_UI_description_Analyze.png      |binary
 StepReg-1.5.1/StepReg/vignettes/src/StepReg_shiny_UI_description_File.png         |binary
 31 files changed, 1301 insertions(+), 680 deletions(-)

More information about StepReg at CRAN
Permanent link

Package reticulate updated to version 1.37.0 with previous version 1.36.1 dated 2024-04-22

Title: Interface to 'Python'
Description: Interface to 'Python' modules, classes, and functions. When calling into 'Python', R data types are automatically converted to their equivalent 'Python' types. When values are returned from 'Python' to R they are converted back to R types. Compatible with all versions of 'Python' >= 2.7.
Author: Tomasz Kalinowski [ctb, cre], Kevin Ushey [aut], JJ Allaire [aut], RStudio [cph, fnd], Yuan Tang [aut, cph] , Dirk Eddelbuettel [ctb, cph], Bryan Lewis [ctb, cph], Sigrid Keydana [ctb], Ryan Hafen [ctb, cph], Marcus Geelnard [ctb, cph]
Maintainer: Tomasz Kalinowski <tomasz@posit.co>

Diff between reticulate versions 1.36.1 dated 2024-04-22 and 1.37.0 dated 2024-05-21

 reticulate-1.36.1/reticulate/inst/python/rpytools/signals.py                            |only
 reticulate-1.37.0/reticulate/DESCRIPTION                                                |    6 
 reticulate-1.37.0/reticulate/MD5                                                        |   45 
 reticulate-1.37.0/reticulate/NEWS.md                                                    |   28 
 reticulate-1.37.0/reticulate/R/RcppExports.R                                            |   16 
 reticulate-1.37.0/reticulate/R/conda.R                                                  |    2 
 reticulate-1.37.0/reticulate/R/package.R                                                |   18 
 reticulate-1.37.0/reticulate/R/python.R                                                 |   81 
 reticulate-1.37.0/reticulate/R/virtualenv.R                                             |    4 
 reticulate-1.37.0/reticulate/build/vignette.rds                                         |binary
 reticulate-1.37.0/reticulate/inst/doc/python_primer.html                                |  868 +++++-----
 reticulate-1.37.0/reticulate/inst/python/rpytools/call.py                               |   21 
 reticulate-1.37.0/reticulate/src/RcppExports.cpp                                        |   42 
 reticulate-1.37.0/reticulate/src/event_loop.cpp                                         |   27 
 reticulate-1.37.0/reticulate/src/libpython.cpp                                          |   19 
 reticulate-1.37.0/reticulate/src/libpython.h                                            |   13 
 reticulate-1.37.0/reticulate/src/python.cpp                                             |  200 +-
 reticulate-1.37.0/reticulate/src/signals.cpp                                            |  130 -
 reticulate-1.37.0/reticulate/src/signals.h                                              |    3 
 reticulate-1.37.0/reticulate/src/tinythread.h                                           |    3 
 reticulate-1.37.0/reticulate/tests/testthat/_snaps/python-knitr-engine/test-chunking.md |    2 
 reticulate-1.37.0/reticulate/tests/testthat/resources/test-chunking.md                  |    2 
 reticulate-1.37.0/reticulate/tests/testthat/test-interrupts.R                           |  171 +
 reticulate-1.37.0/reticulate/tests/testthat/test-python-scipy-sparse-matrix.R           |   10 
 24 files changed, 979 insertions(+), 732 deletions(-)

More information about reticulate at CRAN
Permanent link

Package polyCub updated to version 0.9.1 with previous version 0.9.0 dated 2023-10-25

Title: Cubature over Polygonal Domains
Description: Numerical integration of continuously differentiable functions f(x,y) over simple closed polygonal domains. The following cubature methods are implemented: product Gauss cubature (Sommariva and Vianello, 2007, <doi:10.1007/s10543-007-0131-2>), the simple two-dimensional midpoint rule (wrapping 'spatstat.geom' functions), and adaptive cubature for radially symmetric functions via line integrate() along the polygon boundary (Meyer and Held, 2014, <doi:10.1214/14-AOAS743>, Supplement B). For simple integration along the axes, the 'cubature' package is more appropriate.
Author: Sebastian Meyer [aut, cre, trl] , Leonhard Held [ths], Michael Hoehle [ths]
Maintainer: Sebastian Meyer <seb.meyer@fau.de>

Diff between polyCub versions 0.9.0 dated 2023-10-25 and 0.9.1 dated 2024-05-21

 DESCRIPTION                |   14 
 MD5                        |   40 -
 NEWS.md                    |    7 
 R/polyCub.R                |    5 
 R/polyCub.midpoint.R       |    2 
 R/zzz.R                    |   12 
 README.md                  |   10 
 build/partial.rdb          |binary
 build/vignette.rds         |binary
 inst/doc/polyCub.R         |    2 
 inst/doc/polyCub.Rmd       |   33 +
 inst/doc/polyCub.html      |  960 +++++++++++++++++----------------------------
 man/polyCub-package.Rd     |    8 
 man/polyCub.Rd             |    5 
 man/polyCub.SV.Rd          |    4 
 man/polyCub.exact.Gauss.Rd |    4 
 man/polyCub.iso.Rd         |    4 
 man/polyCub.midpoint.Rd    |    4 
 tests/test-polyCub.R       |    2 
 tests/test-regression.R    |    2 
 vignettes/polyCub.Rmd      |   33 +
 21 files changed, 492 insertions(+), 659 deletions(-)

More information about polyCub at CRAN
Permanent link

Package pmartR updated to version 2.4.5 with previous version 2.4.4 dated 2024-02-27

Title: Panomics Marketplace - Quality Control and Statistical Analysis for Panomics Data
Description: Provides functionality for quality control processing and statistical analysis of mass spectrometry (MS) omics data, in particular proteomic (either at the peptide or the protein level), lipidomic, and metabolomic data, as well as RNA-seq based count data and nuclear magnetic resonance (NMR) data. This includes data transformation, specification of groups that are to be compared against each other, filtering of features and/or samples, data normalization, data summarization (correlation, PCA), and statistical comparisons between defined groups. Implements methods described in: Webb-Robertson et al. (2014) <doi:10.1074/mcp.M113.030932>. Webb-Robertson et al. (2011) <doi:10.1002/pmic.201100078>. Matzke et al. (2011) <doi:10.1093/bioinformatics/btr479>. Matzke et al. (2013) <doi:10.1002/pmic.201200269>. Polpitiya et al. (2008) <doi:10.1093/bioinformatics/btn217>. Webb-Robertson et al. (2010) <doi:10.1021/pr1005247>.
Author: Lisa Bramer [aut, cre], Kelly Stratton [aut], Daniel Claborne [aut], Evan Glasscock [ctb], Rachel Richardson [ctb], David Degnan [ctb], Evan Martin [ctb]
Maintainer: Lisa Bramer <lisa.bramer@pnnl.gov>

Diff between pmartR versions 2.4.4 dated 2024-02-27 and 2.4.5 dated 2024-05-21

 DESCRIPTION                                 |    8 +-
 MD5                                         |   52 +++++++++---------
 NAMESPACE                                   |    1 
 R/applyFilt.R                               |    8 --
 R/as.omicsData.R                            |    4 -
 R/group_designation.R                       |    6 +-
 R/imd_anova.R                               |   63 +---------------------
 R/normalize_zero_one.R                      |only
 R/plot_fns.R                                |   79 +++++++++++++++++-----------
 R/protein_quant.R                           |   53 +++++++++---------
 R/report_dataRes.R                          |    2 
 R/seqData_wrappers.R                        |    8 ++
 README.md                                   |    2 
 man/normalize_zero_one_scaling.Rd           |only
 man/protein_quant.Rd                        |    7 ++
 man/report_dataRes.Rd                       |    2 
 man/zero_one_scale.Rd                       |only
 tests/testthat/test_as_trelliData.R         |   10 ++-
 tests/testthat/test_as_trelliData_edata.R   |    1 
 tests/testthat/test_as_trelliData_summary.R |    2 
 tests/testthat/test_dispersion_est.R        |    6 +-
 tests/testthat/test_edata_structure.R       |    8 +-
 tests/testthat/test_filter_custom.R         |    4 -
 tests/testthat/test_group_designation.R     |    4 -
 tests/testthat/test_imd_anova.R             |   42 ++++++++++++++
 tests/testthat/test_plots.R                 |    2 
 tests/testthat/test_quant_protein.R         |    6 +-
 tests/testthat/test_trelli_pvalue_filter.R  |    2 
 tests/testthat/test_zero_one_scaling.R      |only
 29 files changed, 204 insertions(+), 178 deletions(-)

More information about pmartR at CRAN
Permanent link

Package COINr updated to version 1.1.14 with previous version 1.1.7 dated 2023-10-09

Title: Composite Indicator Construction and Analysis
Description: A comprehensive high-level package, for composite indicator construction and analysis. It is a "development environment" for composite indicators and scoreboards, which includes utilities for construction (indicator selection, denomination, imputation, data treatment, normalisation, weighting and aggregation) and analysis (multivariate analysis, correlation plotting, short cuts for principal component analysis, global sensitivity analysis, and more). A composite indicator is completely encapsulated inside a single hierarchical list called a "coin". This allows a fast and efficient work flow, as well as making quick copies, testing methodological variations and making comparisons. It also includes many plotting options, both statistical (scatter plots, distribution plots) as well as for presenting results.
Author: William Becker [aut, cre, cph]
Maintainer: William Becker <william.becker@bluefoxdata.eu>

Diff between COINr versions 1.1.7 dated 2023-10-09 and 1.1.14 dated 2024-05-21

 DESCRIPTION                        |   10 
 MD5                                |  109 ++---
 NAMESPACE                          |    5 
 NEWS.md                            |   29 +
 R/aggregate.R                      |  260 ++++++++++--
 R/audit_tools.R                    |    2 
 R/compare.R                        |   72 +++
 R/custom.R                         |only
 R/impute.R                         |  207 ++++++++--
 R/new_coin.R                       |   43 +-
 R/normalise.R                      |  234 +++++++++--
 R/results.R                        |    6 
 R/treat.R                          |   77 +++
 R/utils.R                          |   33 +
 R/write_to_coins.R                 |    4 
 inst/doc/adjustments.html          |   46 +-
 inst/doc/aggregate.R               |   43 +-
 inst/doc/aggregate.Rmd             |   49 +-
 inst/doc/aggregate.html            |   60 +-
 inst/doc/imputation.Rmd            |    9 
 inst/doc/imputation.html           |   21 +
 inst/doc/normalise.R               |  123 +++++
 inst/doc/normalise.Rmd             |  367 ++++++++++++++++-
 inst/doc/normalise.html            |  764 ++++++++++++++++++++++++++-----------
 inst/doc/sensitivity.html          |   12 
 man/Aggregate.coin.Rd              |   41 +
 man/Aggregate.data.frame.Rd        |    2 
 man/Aggregate.purse.Rd             |   14 
 man/Custom.Rd                      |only
 man/Custom.coin.Rd                 |only
 man/Custom.purse.Rd                |only
 man/Impute.coin.Rd                 |    7 
 man/Impute.data.frame.Rd           |    7 
 man/Impute.numeric.Rd              |    3 
 man/Impute.purse.Rd                |    9 
 man/Normalise.coin.Rd              |   18 
 man/Normalise.data.frame.Rd        |    3 
 man/Normalise.numeric.Rd           |    3 
 man/Treat.purse.Rd                 |    4 
 man/a_amean.Rd                     |    2 
 man/a_genmean.Rd                   |only
 man/compare_coins_corr.Rd          |only
 man/i_median_grp.Rd                |    5 
 man/impute_panel.Rd                |   10 
 man/n_dist2targ.Rd                 |    5 
 man/n_goalposts.Rd                 |   32 +
 man/n_minmax.Rd                    |    6 
 man/n_scaled.Rd                    |   12 
 man/n_zscore.Rd                    |    6 
 man/new_coin.Rd                    |    6 
 tests/testthat/test-Impute.R       |   45 ++
 tests/testthat/test-aggregate.R    |  121 +++++
 tests/testthat/test-custom.R       |only
 tests/testthat/test-impute_panel.R |   42 ++
 tests/testthat/test-normalise.R    |  102 ++++
 tests/testthat/test-treat.R        |   13 
 vignettes/aggregate.Rmd            |   49 +-
 vignettes/imputation.Rmd           |    9 
 vignettes/normalise.Rmd            |  367 ++++++++++++++++-
 59 files changed, 2889 insertions(+), 639 deletions(-)

More information about COINr at CRAN
Permanent link

Package rflsgen updated to version 1.2.2 with previous version 1.2.1 dated 2022-11-17

Title: Neutral Landscape Generator with Targets on Landscape Indices
Description: Interface to the 'flsgen' neutral landscape generator <https://github.com/dimitri-justeau/flsgen>. It allows to - Generate fractal terrain; - Generate landscape structures satisfying user targets over landscape indices; - Generate landscape raster from landscape structures.
Author: Dimitri Justeau-Allaire, Gregoire Blanchard, Thomas Ibanez, Xavier Lorca, Ghislain Vieilledent, Philippe Birnbaum
Maintainer: Dimitri Justeau-Allaire <dimitri.justeau@gmail.com>

Diff between rflsgen versions 1.2.1 dated 2022-11-17 and 1.2.2 dated 2024-05-21

 DESCRIPTION                                                  |    8 +-
 MD5                                                          |   30 +++++------
 NEWS.md                                                      |    6 ++
 R/flsgen_generate.R                                          |    2 
 build/vignette.rds                                           |binary
 inst/CITATION                                                |   16 ++---
 inst/doc/FAQ.pdf                                             |binary
 inst/doc/Targets.pdf                                         |binary
 inst/doc/UseCase1.pdf                                        |binary
 inst/doc/UseCase2.Rmd                                        |    2 
 inst/doc/UseCase2.pdf                                        |binary
 inst/doc/UseCase3.Rmd                                        |    7 +-
 inst/doc/UseCase3.pdf                                        |binary
 tests/testthat/test_generate_landscape_with_square_patches.R |    2 
 vignettes/UseCase2.Rmd                                       |    2 
 vignettes/UseCase3.Rmd                                       |    7 +-
 16 files changed, 45 insertions(+), 37 deletions(-)

More information about rflsgen at CRAN
Permanent link

Package zendown updated to version 0.1.0 with previous version 0.0.2 dated 2024-04-15

Title: Access Files from 'Zenodo' Deposits
Description: Access, download and locally cache files deposited on 'Zenodo' <https://zenodo.org>.
Author: Raphael Saldanha [aut, cre]
Maintainer: Raphael Saldanha <raphael.de-freitas-saldanha@inria.fr>

Diff between zendown versions 0.0.2 dated 2024-04-15 and 0.1.0 dated 2024-05-21

 DESCRIPTION                              |   15 ++++---
 MD5                                      |   31 ++++++++-------
 NAMESPACE                                |    1 
 NEWS.md                                  |    8 +++-
 R/cache_dir.R                            |   38 +++++++++++++------
 R/cache_report.R                         |only
 R/delete_mirror.R                        |   10 +++--
 R/download_deposit.R                     |   36 +++++++++++-------
 R/list_deposit.R                         |    2 -
 R/mirror_deposit.R                       |   61 +++++++++++++++++--------------
 R/zen_file.R                             |   23 ++++++++---
 README.md                                |   27 +++----------
 man/cache_report.Rd                      |only
 man/delete_mirror.Rd                     |    6 ++-
 man/figures/README-unnamed-chunk-8-1.png |only
 man/figures/README-unnamed-chunk-9-1.png |binary
 man/mirror_deposit.Rd                    |   21 ++++++++--
 man/zen_file.Rd                          |   22 ++++++++---
 18 files changed, 186 insertions(+), 115 deletions(-)

More information about zendown at CRAN
Permanent link

Package PaRe updated to version 0.1.13 with previous version 0.1.12 dated 2023-08-11

Title: A Way to Perform Code Review or QA on Other Packages
Description: Reviews other packages during code review by looking at their dependencies, code style, code complexity, and how internally defined functions interact with one another.
Author: Maarten van Kessel [aut, cre]
Maintainer: Maarten van Kessel <m.l.vankessel@erasmusmc.nl>

Diff between PaRe versions 0.1.12 dated 2023-08-11 and 0.1.13 dated 2024-05-21

 PaRe-0.1.12/PaRe/man/getVersionDf.Rd                         |only
 PaRe-0.1.12/PaRe/man/printMessage.Rd                         |only
 PaRe-0.1.12/PaRe/tests/testthat/setup.R                      |only
 PaRe-0.1.13/PaRe/DESCRIPTION                                 |    7 -
 PaRe-0.1.13/PaRe/MD5                                         |   53 +++++-----
 PaRe-0.1.13/PaRe/NEWS.md                                     |    6 +
 PaRe-0.1.13/PaRe/R/R6-Code.R                                 |   15 +-
 PaRe-0.1.13/PaRe/R/checkDependencies.R                       |   45 ++++----
 PaRe-0.1.13/PaRe/R/getDefaultPermittedPackages.R             |   17 +--
 PaRe-0.1.13/PaRe/R/getGraphData.R                            |    4 
 PaRe-0.1.13/PaRe/README.md                                   |    4 
 PaRe-0.1.13/PaRe/build/vignette.rds                          |binary
 PaRe-0.1.13/PaRe/inst/doc/Documentation.html                 |   56 +++++------
 PaRe-0.1.13/PaRe/inst/rmd/ReportInjectable.Rmd               |   14 ++
 PaRe-0.1.13/PaRe/inst/rmd/report.Rmd                         |   18 ++-
 PaRe-0.1.13/PaRe/man/Code.Rd                                 |   17 +--
 PaRe-0.1.13/PaRe/man/PaRe-package.Rd                         |    2 
 PaRe-0.1.13/PaRe/man/checkDependencies.Rd                    |   14 +-
 PaRe-0.1.13/PaRe/tests/testthat/helper-checkSuggests.R       |only
 PaRe-0.1.13/PaRe/tests/testthat/helper-makeRepo.R            |only
 PaRe-0.1.13/PaRe/tests/testthat/test-addPareArticle.R        |   14 ++
 PaRe-0.1.13/PaRe/tests/testthat/test-checkDependencies.R     |   44 ++------
 PaRe-0.1.13/PaRe/tests/testthat/test-getApplyCall.R          |   12 ++
 PaRe-0.1.13/PaRe/tests/testthat/test-getApplyFromLines.R     |   22 ++--
 PaRe-0.1.13/PaRe/tests/testthat/test-getDlplyCall.R          |   10 +
 PaRe-0.1.13/PaRe/tests/testthat/test-getDlplyCallFromLines.R |   45 ++++----
 PaRe-0.1.13/PaRe/tests/testthat/test-getDoCall.R             |   10 +
 PaRe-0.1.13/PaRe/tests/testthat/test-getDoCallFromLines.R    |   13 +-
 PaRe-0.1.13/PaRe/tests/testthat/test-getFunCall.R            |    7 +
 PaRe-0.1.13/PaRe/tests/testthat/test-getMultiLineFun.R       |    7 +
 30 files changed, 265 insertions(+), 191 deletions(-)

More information about PaRe at CRAN
Permanent link

Package TraMineR updated to version 2.2-10 with previous version 2.2-9 dated 2024-01-08

Title: Trajectory Miner: a Sequence Analysis Toolkit
Description: Set of sequence analysis tools for manipulating, describing and rendering categorical sequences, and more generally mining sequence data in the field of social sciences. Although this sequence analysis package is primarily intended for state or event sequences that describe time use or life courses such as family formation histories or professional careers, its features also apply to many other kinds of categorical sequence data. It accepts many different sequence representations as input and provides tools for converting sequences from one format to another. It offers several functions for describing and rendering sequences, for computing distances between sequences with different metrics (among which optimal matching), original dissimilarity-based analysis tools, and functions for extracting the most frequent event subsequences and identifying the most discriminating ones among them. A user's guide can be found on the TraMineR web page.
Author: Alexis Gabadinho [aut, cph], Matthias Studer [aut, cph] , Nicolas Mueller [aut], Reto Buergin [aut] , Pierre-Alexandre Fonta [aut], Gilbert Ritschard [aut, cre, cph]
Maintainer: Gilbert Ritschard <gilbert.ritschard@unige.ch>

Diff between TraMineR versions 2.2-9 dated 2024-01-08 and 2.2-10 dated 2024-05-21

 DESCRIPTION                          |   10 +--
 MD5                                  |  112 ++++++++++++++++++-----------------
 NAMESPACE                            |    3 
 NEWS                                 |   44 +++++++++++++
 R/dissmergegroups.R                  |only
 R/plot.stslist.statd.R               |   13 ++--
 R/seqcost.R                          |    2 
 R/seqdef.R                           |    3 
 R/seqdist-CHI2.R                     |    2 
 R/seqdist.R                          |   32 +++++++++-
 R/seqdomassoc.R                      |    4 -
 R/seqhasmiss.R                       |only
 R/seqidegrad.R                       |    7 +-
 R/seqplot.R                          |    6 +
 R/seqplotMD.R                        |    6 +
 R/seqprecarity.R                     |    2 
 R/seqprecstart.R                     |   14 ++++
 R/seqtab.R                           |    2 
 R/stslist-methods.R                  |    4 -
 build/partial.rdb                    |binary
 build/vignette.rds                   |binary
 data/ex1.rda                         |binary
 data/ex2.rda                         |binary
 data/famform.rda                     |binary
 inst/NEWS.Rd                         |   49 +++++++++++++++
 inst/doc/TraMineR-state-sequence.pdf |binary
 man/TraMineR-package.Rd              |    2 
 man/dissmergegroups.Rd               |only
 man/seqMD.Rd                         |    2 
 man/seqdef.Rd                        |    2 
 man/seqdist.Rd                       |   22 ++++--
 man/seqformat.Rd                     |    4 -
 man/seqhasmiss.Rd                    |only
 man/seqindic.Rd                      |    4 -
 man/seqplot.Rd                       |    2 
 man/seqplotMD.Rd                     |    4 -
 man/seqtransn.Rd                     |   16 ++---
 src/NMSDURSoftdistance.cpp           |    4 -
 src/NMSMSTSoftdistance.cpp           |    4 -
 src/NMSMSTSoftdistanceII.cpp         |    4 -
 src/NMSMSTdistance.cpp               |    4 -
 src/NMSdistance.cpp                  |    5 -
 src/OMPerdistanceII.cpp              |only
 src/OMPerdistanceII.h                |only
 src/TraMineR.h                       |    2 
 src/checktriangleineq.c              |    2 
 src/chisq.cpp                        |    4 -
 src/distancecalculator.h             |   10 +--
 src/distancefunctions.cpp            |   11 ++-
 src/distanceobject.cpp               |    4 -
 src/distanceobject.h                 |   10 +--
 src/eventdictionary.cpp              |    8 +-
 src/eventseq.cpp                     |   10 +--
 src/eventseq.h                       |    6 -
 src/inertiafunctions.c               |   42 ++++++-------
 src/seqedist.cpp                     |    6 -
 src/tmrsequence.cpp                  |   74 +++++++++++------------
 src/traminerdebug.cpp                |    2 
 src/wcorr.c                          |    2 
 src/weightedinertia.cpp              |   32 +++++-----
 60 files changed, 393 insertions(+), 226 deletions(-)

More information about TraMineR at CRAN
Permanent link

Package shiny.blueprint updated to version 0.3.0 with previous version 0.2.0 dated 2023-03-15

Title: Palantir's 'Blueprint' for 'Shiny' Apps
Description: Easily use 'Blueprint', the popular 'React' library from Palantir, in your 'Shiny' app. 'Blueprint' provides a rich set of UI components for creating visually appealing applications and is optimized for building complex, data-dense web interfaces. This package provides most components from the underlying library, as well as special wrappers for some components to make it easy to use them in 'R' without writing 'JavaScript' code.
Author: Jakub Sobolewski [aut, cre], Kamil Zyla [aut], Filip Akkad [aut], Filip Stachura [aut], Pawel Chabros [aut], Appsilon Sp. z o.o. [cph]
Maintainer: Jakub Sobolewski <opensource+jakub.sobolewski@appsilon.com>

Diff between shiny.blueprint versions 0.2.0 dated 2023-03-15 and 0.3.0 dated 2024-05-21

 DESCRIPTION                           |   20 
 MD5                                   |   69 +--
 NEWS.md                               |    7 
 README.md                             |   23 -
 build/vignette.rds                    |binary
 inst/doc/shiny-react.html             |  748 +++++++++++++++++++++++-----------
 inst/examples/Dialog.R                |    2 
 inst/examples/Drawer.R                |    2 
 inst/examples/HTMLTable.R             |    2 
 inst/examples/Label.R                 |    2 
 inst/examples/Menu.R                  |    2 
 inst/examples/MultistepDialog.R       |    6 
 inst/examples/Overlay.R               |    6 
 inst/examples/Popover.R               |    2 
 inst/examples/Tabs.R                  |    2 
 inst/examples/Toast.R                 |   10 
 inst/examples/Tree.R                  |   15 
 inst/examples/mbazaDashboard/home.R   |    6 
 inst/examples/mbazaDashboard/navbar.R |    2 
 inst/examples/showcase/app.R          |   51 +-
 inst/www/231.blueprint.min.js         |only
 inst/www/672.blueprint.min.js         |only
 inst/www/783.blueprint.min.js         |only
 inst/www/824.blueprint.min.js         |only
 inst/www/860.blueprint.min.js         |only
 inst/www/blueprint.min.js             |    2 
 inst/www/blueprint.min.js.LICENSE.txt |   54 --
 man/Dialog.Rd                         |    2 
 man/Drawer.Rd                         |    2 
 man/HTMLTable.Rd                      |    2 
 man/Label.Rd                          |    2 
 man/Menu.Rd                           |    2 
 man/MultistepDialog.Rd                |    6 
 man/Overlay.Rd                        |    6 
 man/Popover.Rd                        |    2 
 man/Tabs.Rd                           |    2 
 man/Tree.Rd                           |   44 +-
 man/figures/shiny-blueprint.png       |binary
 38 files changed, 691 insertions(+), 412 deletions(-)

More information about shiny.blueprint at CRAN
Permanent link

Package rapiclient updated to version 0.1.5 with previous version 0.1.4 dated 2024-04-23

Title: Dynamic OpenAPI/Swagger Client
Description: Access services specified in OpenAPI (formerly Swagger) format. It is not a code generator. Client is generated dynamically as a list of R functions.
Author: Darko Bergant [aut], Marcel Ramos [cre, ctb] , Alexandru Mahmoud [ctb], Sean Davis [ctb], Martin Morgan [ctb]
Maintainer: Marcel Ramos <marcel.ramos@roswellpark.org>

Diff between rapiclient versions 0.1.4 dated 2024-04-23 and 0.1.5 dated 2024-05-21

 DESCRIPTION                             |   20 
 LICENSE                                 |    4 
 MD5                                     |   59 -
 NAMESPACE                               |   36 -
 NEWS.md                                 |only
 R/graph.R                               |  308 ++++----
 R/operations.R                          | 1144 ++++++++++++++++----------------
 R/print.R                               |  250 +++---
 R/rapiclient.R                          |   76 +-
 R/schema.R                              |  236 +++---
 inst/extdata/sample_specs/petstore.yaml |  206 ++---
 man/build_op_url.Rd                     |   52 -
 man/default_arguments.Rd                |   64 -
 man/get_api.Rd                          |   60 -
 man/get_message_body.Rd                 |   60 -
 man/get_operation_definitions.Rd        |   46 -
 man/get_operations.Rd                   |  132 +--
 man/get_parameters.Rd                   |   32 
 man/get_schema_graphviz_dot.Rd          |   50 -
 man/get_schema_structure.Rd             |   42 -
 man/get_schemas.Rd                      |   36 -
 man/print.rapi_api.Rd                   |   34 
 man/print.rapi_operation.Rd             |   34 
 man/print.rapi_schema_function.Rd       |   34 
 man/print_wrap.Rd                       |   34 
 man/rapiclient-package.Rd               |  126 +--
 man/result_handlers.Rd                  |   84 +-
 tests/testthat.R                        |    8 
 tests/testthat/test_external_api.R      |  174 ++--
 tests/testthat/test_petstore_api.R      |  130 +--
 tests/testthat/test_post.R              |  172 ++--
 31 files changed, 1874 insertions(+), 1869 deletions(-)

More information about rapiclient at CRAN
Permanent link

Package gptstudio updated to version 0.4.0 with previous version 0.3.0 dated 2023-07-11

Title: Use Large Language Models Directly in your Development Environment
Description: Large language models are readily accessible via API. This package lowers the barrier to use the API inside of your development environment. For more on the API, see <https://platform.openai.com/docs/introduction>.
Author: Michel Nivard [aut, cph], James Wade [aut, cre, cph] , Samuel Calderon [aut]
Maintainer: James Wade <github@jameshwade.com>

Diff between gptstudio versions 0.3.0 dated 2023-07-11 and 0.4.0 dated 2024-05-21

 gptstudio-0.3.0/gptstudio/R/anthropic.R                                  |only
 gptstudio-0.3.0/gptstudio/R/azure-openai.R                               |only
 gptstudio-0.3.0/gptstudio/R/check_api.R                                  |only
 gptstudio-0.3.0/gptstudio/R/google_palm_makersuite.R                     |only
 gptstudio-0.3.0/gptstudio/R/huggingface.R                                |only
 gptstudio-0.3.0/gptstudio/R/openai_api_calls.R                           |only
 gptstudio-0.3.0/gptstudio/R/openai_gpt_queries.R                         |only
 gptstudio-0.3.0/gptstudio/R/openai_streaming.R                           |only
 gptstudio-0.3.0/gptstudio/inst/scratchpad                                |only
 gptstudio-0.3.0/gptstudio/man/addin_chatgpt.Rd                           |only
 gptstudio-0.3.0/gptstudio/man/addin_chatgpt_in_source.Rd                 |only
 gptstudio-0.3.0/gptstudio/man/addin_comment_code.Rd                      |only
 gptstudio-0.3.0/gptstudio/man/addin_spelling_grammar.Rd                  |only
 gptstudio-0.3.0/gptstudio/man/check_api.Rd                               |only
 gptstudio-0.3.0/gptstudio/man/check_api_connection.Rd                    |only
 gptstudio-0.3.0/gptstudio/man/check_api_key.Rd                           |only
 gptstudio-0.3.0/gptstudio/man/create_completion_palm.Rd                  |only
 gptstudio-0.3.0/gptstudio/man/gpt_chat.Rd                                |only
 gptstudio-0.3.0/gptstudio/man/gpt_chat_in_source.Rd                      |only
 gptstudio-0.3.0/gptstudio/man/gptstudio_job.Rd                           |only
 gptstudio-0.3.0/gptstudio/man/openai_stream_parse.Rd                     |only
 gptstudio-0.3.0/gptstudio/man/query_api_palm.Rd                          |only
 gptstudio-0.3.0/gptstudio/man/request_base_palm.Rd                       |only
 gptstudio-0.3.0/gptstudio/tests/testthat/_snaps                          |only
 gptstudio-0.3.0/gptstudio/tests/testthat/test-check_api.R                |only
 gptstudio-0.4.0/gptstudio/DESCRIPTION                                    |   21 
 gptstudio-0.4.0/gptstudio/MD5                                            |  196 +++--
 gptstudio-0.4.0/gptstudio/NAMESPACE                                      |   46 -
 gptstudio-0.4.0/gptstudio/NEWS.md                                        |  112 ++-
 gptstudio-0.4.0/gptstudio/R/addin_chatgpt-in-source.R                    |   10 
 gptstudio-0.4.0/gptstudio/R/addin_chatgpt.R                              |   24 
 gptstudio-0.4.0/gptstudio/R/addin_comment-code.R                         |   11 
 gptstudio-0.4.0/gptstudio/R/addin_spelling-and-grammar.R                 |   10 
 gptstudio-0.4.0/gptstudio/R/api_build_skeleton.R                         |  190 +++--
 gptstudio-0.4.0/gptstudio/R/api_perform_request.R                        |  201 ++++-
 gptstudio-0.4.0/gptstudio/R/api_process_response.R                       |  134 ++-
 gptstudio-0.4.0/gptstudio/R/api_skeletons.R                              |  262 +++++--
 gptstudio-0.4.0/gptstudio/R/app_chat_style.R                             |   54 +
 gptstudio-0.4.0/gptstudio/R/app_config.R                                 |   12 
 gptstudio-0.4.0/gptstudio/R/chat.R                                       |only
 gptstudio-0.4.0/gptstudio/R/create_prompt.R                              |  153 ++--
 gptstudio-0.4.0/gptstudio/R/gptstudio-package.R                          |    7 
 gptstudio-0.4.0/gptstudio/R/gptstudio-sitrep.R                           |only
 gptstudio-0.4.0/gptstudio/R/mod_app.R                                    |   45 -
 gptstudio-0.4.0/gptstudio/R/mod_chat.R                                   |  363 +---------
 gptstudio-0.4.0/gptstudio/R/mod_history.R                                |only
 gptstudio-0.4.0/gptstudio/R/mod_settings.R                               |only
 gptstudio-0.4.0/gptstudio/R/mod_sidebar.R                                |only
 gptstudio-0.4.0/gptstudio/R/models.R                                     |only
 gptstudio-0.4.0/gptstudio/R/read_docs.R                                  |only
 gptstudio-0.4.0/gptstudio/R/service-anthropic.R                          |only
 gptstudio-0.4.0/gptstudio/R/service-azure_openai.R                       |only
 gptstudio-0.4.0/gptstudio/R/service-cohere.R                             |only
 gptstudio-0.4.0/gptstudio/R/service-google.R                             |only
 gptstudio-0.4.0/gptstudio/R/service-huggingface.R                        |only
 gptstudio-0.4.0/gptstudio/R/service-ollama.R                             |only
 gptstudio-0.4.0/gptstudio/R/service-openai_api_calls.R                   |only
 gptstudio-0.4.0/gptstudio/R/service-openai_gpt_queries.R                 |only
 gptstudio-0.4.0/gptstudio/R/service-openai_streaming.R                   |only
 gptstudio-0.4.0/gptstudio/R/service-perplexity.R                         |only
 gptstudio-0.4.0/gptstudio/R/streamingMessage.R                           |   12 
 gptstudio-0.4.0/gptstudio/R/welcomeMessage.R                             |   27 
 gptstudio-0.4.0/gptstudio/R/zzz.R                                        |    8 
 gptstudio-0.4.0/gptstudio/README.md                                      |  253 ++----
 gptstudio-0.4.0/gptstudio/build                                          |only
 gptstudio-0.4.0/gptstudio/inst/WORDLIST                                  |   19 
 gptstudio-0.4.0/gptstudio/inst/assets/css/mod_app.css                    |    1 
 gptstudio-0.4.0/gptstudio/inst/assets/js/conversation.js                 |only
 gptstudio-0.4.0/gptstudio/inst/doc                                       |only
 gptstudio-0.4.0/gptstudio/inst/rstudio/addins.dcf                        |   12 
 gptstudio-0.4.0/gptstudio/inst/rstudio/config.yml                        |    5 
 gptstudio-0.4.0/gptstudio/inst/shiny-recorder/app.R                      |    2 
 gptstudio-0.4.0/gptstudio/man/OpenaiStreamParser.Rd                      |only
 gptstudio-0.4.0/gptstudio/man/chat.Rd                                    |only
 gptstudio-0.4.0/gptstudio/man/chat_create_system_prompt.Rd               |   48 -
 gptstudio-0.4.0/gptstudio/man/chat_history_append.Rd                     |    4 
 gptstudio-0.4.0/gptstudio/man/check_api_connection_openai.Rd             |only
 gptstudio-0.4.0/gptstudio/man/create_chat_cohere.Rd                      |only
 gptstudio-0.4.0/gptstudio/man/create_completion_anthropic.Rd             |   20 
 gptstudio-0.4.0/gptstudio/man/create_completion_azure_openai.Rd          |   13 
 gptstudio-0.4.0/gptstudio/man/create_completion_google.Rd                |only
 gptstudio-0.4.0/gptstudio/man/create_completion_huggingface.Rd           |    2 
 gptstudio-0.4.0/gptstudio/man/create_completion_perplexity.Rd            |only
 gptstudio-0.4.0/gptstudio/man/figures/logo.png                           |binary
 gptstudio-0.4.0/gptstudio/man/get_available_endpoints.Rd                 |    2 
 gptstudio-0.4.0/gptstudio/man/get_available_models.Rd                    |    6 
 gptstudio-0.4.0/gptstudio/man/gptstudio_chat.Rd                          |only
 gptstudio-0.4.0/gptstudio/man/gptstudio_chat_in_source_addin.Rd          |only
 gptstudio-0.4.0/gptstudio/man/gptstudio_comment_code.Rd                  |only
 gptstudio-0.4.0/gptstudio/man/gptstudio_create_skeleton.Rd               |only
 gptstudio-0.4.0/gptstudio/man/gptstudio_request_perform.Rd               |    2 
 gptstudio-0.4.0/gptstudio/man/gptstudio_response_process.Rd              |    2 
 gptstudio-0.4.0/gptstudio/man/gptstudio_sitrep.Rd                        |only
 gptstudio-0.4.0/gptstudio/man/gptstudio_spelling_grammar.Rd              |only
 gptstudio-0.4.0/gptstudio/man/mod_chat_server.Rd                         |    6 
 gptstudio-0.4.0/gptstudio/man/openai_create_chat_completion.Rd           |    2 
 gptstudio-0.4.0/gptstudio/man/query_api_anthropic.Rd                     |    2 
 gptstudio-0.4.0/gptstudio/man/query_api_cohere.Rd                        |only
 gptstudio-0.4.0/gptstudio/man/query_api_google.Rd                        |only
 gptstudio-0.4.0/gptstudio/man/query_api_huggingface.Rd                   |    2 
 gptstudio-0.4.0/gptstudio/man/query_api_perplexity.Rd                    |only
 gptstudio-0.4.0/gptstudio/man/query_openai_api.Rd                        |    5 
 gptstudio-0.4.0/gptstudio/man/request_base.Rd                            |    9 
 gptstudio-0.4.0/gptstudio/man/request_base_anthropic.Rd                  |    2 
 gptstudio-0.4.0/gptstudio/man/request_base_cohere.Rd                     |only
 gptstudio-0.4.0/gptstudio/man/request_base_google.Rd                     |only
 gptstudio-0.4.0/gptstudio/man/request_base_huggingface.Rd                |    2 
 gptstudio-0.4.0/gptstudio/man/request_base_perplexity.Rd                 |only
 gptstudio-0.4.0/gptstudio/man/stream_chat_completion.Rd                  |   37 -
 gptstudio-0.4.0/gptstudio/man/streamingMessage.Rd                        |    4 
 gptstudio-0.4.0/gptstudio/man/welcomeMessage.Rd                          |    4 
 gptstudio-0.4.0/gptstudio/tests/testthat/test-addins.R                   |   27 
 gptstudio-0.4.0/gptstudio/tests/testthat/test-gpt_queries.R              |  104 --
 gptstudio-0.4.0/gptstudio/tests/testthat/test-mod_app.R                  |    2 
 gptstudio-0.4.0/gptstudio/tests/testthat/test-read-docs.R                |only
 gptstudio-0.4.0/gptstudio/tests/testthat/test-service-openai_streaming.R |only
 gptstudio-0.4.0/gptstudio/vignettes                                      |only
 117 files changed, 1350 insertions(+), 1147 deletions(-)

More information about gptstudio at CRAN
Permanent link

Package shiny.fluent updated to version 0.4.0 with previous version 0.3.0 dated 2023-01-24

Title: Microsoft Fluent UI for Shiny Apps
Description: A rich set of UI components for building Shiny applications, including inputs, containers, overlays, menus, and various utilities. All components from Fluent UI (the underlying JavaScript library) are available and have usage examples in R.
Author: Jakub Sobolewski [aut, cre], Kamil Zyla [aut], Marek Rogala [aut], Appsilon Sp. z o.o. [cph]
Maintainer: Jakub Sobolewski <opensource+jakub.sobolewski@appsilon.com>

Diff between shiny.fluent versions 0.3.0 dated 2023-01-24 and 0.4.0 dated 2024-05-21

 shiny.fluent-0.3.0/shiny.fluent/build                                           |only
 shiny.fluent-0.3.0/shiny.fluent/inst/doc                                        |only
 shiny.fluent-0.3.0/shiny.fluent/inst/examples/Theme.R                           |only
 shiny.fluent-0.3.0/shiny.fluent/inst/examples/dashboard/example_page.R          |only
 shiny.fluent-0.3.0/shiny.fluent/inst/examples/dashboard/www/examples_scripts.js |only
 shiny.fluent-0.3.0/shiny.fluent/vignettes                                       |only
 shiny.fluent-0.4.0/shiny.fluent/DESCRIPTION                                     |   29 
 shiny.fluent-0.4.0/shiny.fluent/MD5                                             |  336 
 shiny.fluent-0.4.0/shiny.fluent/NAMESPACE                                       |    1 
 shiny.fluent-0.4.0/shiny.fluent/NEWS.md                                         |    5 
 shiny.fluent-0.4.0/shiny.fluent/R/documentation.R                               | 3518 ++++------
 shiny.fluent-0.4.0/shiny.fluent/R/examples.R                                    |   19 
 shiny.fluent-0.4.0/shiny.fluent/R/extensions.R                                  |   72 
 shiny.fluent-0.4.0/shiny.fluent/R/utils.R                                       |only
 shiny.fluent-0.4.0/shiny.fluent/README.md                                       |    8 
 shiny.fluent-0.4.0/shiny.fluent/inst/examples/ActivityItem.R                    |   32 
 shiny.fluent-0.4.0/shiny.fluent/inst/examples/Announced.R                       |   14 
 shiny.fluent-0.4.0/shiny.fluent/inst/examples/Breadcrumb.R                      |   39 
 shiny.fluent-0.4.0/shiny.fluent/inst/examples/Button.R                          |   85 
 shiny.fluent-0.4.0/shiny.fluent/inst/examples/Button2.R                         |only
 shiny.fluent-0.4.0/shiny.fluent/inst/examples/Button3.R                         |only
 shiny.fluent-0.4.0/shiny.fluent/inst/examples/Button4.R                         |only
 shiny.fluent-0.4.0/shiny.fluent/inst/examples/Calendar.R                        |   53 
 shiny.fluent-0.4.0/shiny.fluent/inst/examples/Callout.R                         |   47 
 shiny.fluent-0.4.0/shiny.fluent/inst/examples/Checkbox.R                        |   29 
 shiny.fluent-0.4.0/shiny.fluent/inst/examples/ChoiceGroup.R                     |   39 
 shiny.fluent-0.4.0/shiny.fluent/inst/examples/Coachmark.R                       |   60 
 shiny.fluent-0.4.0/shiny.fluent/inst/examples/ColorPicker.R                     |   29 
 shiny.fluent-0.4.0/shiny.fluent/inst/examples/ComboBox.R                        |   41 
 shiny.fluent-0.4.0/shiny.fluent/inst/examples/CommandBar.R                      |   74 
 shiny.fluent-0.4.0/shiny.fluent/inst/examples/ContextualMenu.R                  |  175 
 shiny.fluent-0.4.0/shiny.fluent/inst/examples/DatePicker.R                      |   54 
 shiny.fluent-0.4.0/shiny.fluent/inst/examples/DatePicker2.R                     |only
 shiny.fluent-0.4.0/shiny.fluent/inst/examples/DetailsList.R                     |   37 
 shiny.fluent-0.4.0/shiny.fluent/inst/examples/DetailsList2.R                    |only
 shiny.fluent-0.4.0/shiny.fluent/inst/examples/DetailsList3.R                    |only
 shiny.fluent-0.4.0/shiny.fluent/inst/examples/Dialog.R                          |   75 
 shiny.fluent-0.4.0/shiny.fluent/inst/examples/DocumentCard.R                    |   49 
 shiny.fluent-0.4.0/shiny.fluent/inst/examples/DocumentCard2.R                   |only
 shiny.fluent-0.4.0/shiny.fluent/inst/examples/Dropdown.R                        |   40 
 shiny.fluent-0.4.0/shiny.fluent/inst/examples/Dropdown2.R                       |only
 shiny.fluent-0.4.0/shiny.fluent/inst/examples/Facepile.R                        |   27 
 shiny.fluent-0.4.0/shiny.fluent/inst/examples/FocusTrapZone.R                   |   94 
 shiny.fluent-0.4.0/shiny.fluent/inst/examples/FocusZone.R                       |   71 
 shiny.fluent-0.4.0/shiny.fluent/inst/examples/GroupedList.R                     |   34 
 shiny.fluent-0.4.0/shiny.fluent/inst/examples/GroupedList2.R                    |only
 shiny.fluent-0.4.0/shiny.fluent/inst/examples/HoverCard.R                       |   29 
 shiny.fluent-0.4.0/shiny.fluent/inst/examples/Icon.R                            |   26 
 shiny.fluent-0.4.0/shiny.fluent/inst/examples/Image.R                           |   15 
 shiny.fluent-0.4.0/shiny.fluent/inst/examples/Keytips.R                         |  231 
 shiny.fluent-0.4.0/shiny.fluent/inst/examples/Label.R                           |   15 
 shiny.fluent-0.4.0/shiny.fluent/inst/examples/Layer.R                           |   39 
 shiny.fluent-0.4.0/shiny.fluent/inst/examples/LayerHost.R                       |   23 
 shiny.fluent-0.4.0/shiny.fluent/inst/examples/Link.R                            |   15 
 shiny.fluent-0.4.0/shiny.fluent/inst/examples/List.R                            |   30 
 shiny.fluent-0.4.0/shiny.fluent/inst/examples/MarqueeSelection.R                |  240 
 shiny.fluent-0.4.0/shiny.fluent/inst/examples/MessageBar.R                      |   15 
 shiny.fluent-0.4.0/shiny.fluent/inst/examples/Modal.R                           |   59 
 shiny.fluent-0.4.0/shiny.fluent/inst/examples/Nav.R                             |  152 
 shiny.fluent-0.4.0/shiny.fluent/inst/examples/Nav2.R                            |only
 shiny.fluent-0.4.0/shiny.fluent/inst/examples/OverflowSet.R                     |   86 
 shiny.fluent-0.4.0/shiny.fluent/inst/examples/Overlay.R                         |   60 
 shiny.fluent-0.4.0/shiny.fluent/inst/examples/Panel.R                           |   50 
 shiny.fluent-0.4.0/shiny.fluent/inst/examples/PeoplePicker.R                    |   57 
 shiny.fluent-0.4.0/shiny.fluent/inst/examples/Persona.R                         |   25 
 shiny.fluent-0.4.0/shiny.fluent/inst/examples/Pivot.R                           |   21 
 shiny.fluent-0.4.0/shiny.fluent/inst/examples/ProgressIndicator.R               |   21 
 shiny.fluent-0.4.0/shiny.fluent/inst/examples/Rating.R                          |   29 
 shiny.fluent-0.4.0/shiny.fluent/inst/examples/ResizeGroup.R                     |   70 
 shiny.fluent-0.4.0/shiny.fluent/inst/examples/ScrollablePane.R                  |   48 
 shiny.fluent-0.4.0/shiny.fluent/inst/examples/SearchBox.R                       |   29 
 shiny.fluent-0.4.0/shiny.fluent/inst/examples/Separator.R                       |   15 
 shiny.fluent-0.4.0/shiny.fluent/inst/examples/Shimmer.R                         |   33 
 shiny.fluent-0.4.0/shiny.fluent/inst/examples/Slider.R                          |   29 
 shiny.fluent-0.4.0/shiny.fluent/inst/examples/SpinButton.R                      |   29 
 shiny.fluent-0.4.0/shiny.fluent/inst/examples/Spinner.R                         |   15 
 shiny.fluent-0.4.0/shiny.fluent/inst/examples/Stack.R                           |   27 
 shiny.fluent-0.4.0/shiny.fluent/inst/examples/SwatchColorPicker.R               |   45 
 shiny.fluent-0.4.0/shiny.fluent/inst/examples/TagPicker.R                       |  150 
 shiny.fluent-0.4.0/shiny.fluent/inst/examples/TeachingBubble.R                  |   49 
 shiny.fluent-0.4.0/shiny.fluent/inst/examples/Text.R                            |   15 
 shiny.fluent-0.4.0/shiny.fluent/inst/examples/TextField.R                       |   30 
 shiny.fluent-0.4.0/shiny.fluent/inst/examples/TextField2.R                      |only
 shiny.fluent-0.4.0/shiny.fluent/inst/examples/ThemeProvider.R                   |only
 shiny.fluent-0.4.0/shiny.fluent/inst/examples/ThemeProvider2.R                  |only
 shiny.fluent-0.4.0/shiny.fluent/inst/examples/Toggle.R                          |   29 
 shiny.fluent-0.4.0/shiny.fluent/inst/examples/Tooltip.R                         |   23 
 shiny.fluent-0.4.0/shiny.fluent/inst/examples/dashboard/_about_section.scss     |only
 shiny.fluent-0.4.0/shiny.fluent/inst/examples/dashboard/about.R                 |only
 shiny.fluent-0.4.0/shiny.fluent/inst/examples/dashboard/app.R                   |   47 
 shiny.fluent-0.4.0/shiny.fluent/inst/examples/dashboard/examples.R              | 1826 -----
 shiny.fluent-0.4.0/shiny.fluent/inst/examples/dashboard/header.R                |  101 
 shiny.fluent-0.4.0/shiny.fluent/inst/examples/dashboard/manifest.json           |only
 shiny.fluent-0.4.0/shiny.fluent/inst/examples/dashboard/navigation.R            |   14 
 shiny.fluent-0.4.0/shiny.fluent/inst/examples/dashboard/style.scss              |  311 
 shiny.fluent-0.4.0/shiny.fluent/inst/examples/dashboard/utils.R                 |   14 
 shiny.fluent-0.4.0/shiny.fluent/inst/examples/dashboard/www/img                 |only
 shiny.fluent-0.4.0/shiny.fluent/inst/examples/dashboard/www/style.css           |  546 +
 shiny.fluent-0.4.0/shiny.fluent/inst/examples/demo/app.R                        |   33 
 shiny.fluent-0.4.0/shiny.fluent/inst/examples/tutorial/dashboard_layout.R       |   18 
 shiny.fluent-0.4.0/shiny.fluent/inst/www/shiny.fluent/shiny-fluent.js           |    3 
 shiny.fluent-0.4.0/shiny.fluent/man/ActivityItem.Rd                             |   64 
 shiny.fluent-0.4.0/shiny.fluent/man/Announced.Rd                                |   22 
 shiny.fluent-0.4.0/shiny.fluent/man/Breadcrumb.Rd                               |   73 
 shiny.fluent-0.4.0/shiny.fluent/man/Button.Rd                                   |  384 -
 shiny.fluent-0.4.0/shiny.fluent/man/Calendar.Rd                                 |  113 
 shiny.fluent-0.4.0/shiny.fluent/man/Callout.Rd                                  |  131 
 shiny.fluent-0.4.0/shiny.fluent/man/Checkbox.Rd                                 |   71 
 shiny.fluent-0.4.0/shiny.fluent/man/ChoiceGroup.Rd                              |   75 
 shiny.fluent-0.4.0/shiny.fluent/man/Coachmark.Rd                                |  176 
 shiny.fluent-0.4.0/shiny.fluent/man/ColorPicker.Rd                              |  111 
 shiny.fluent-0.4.0/shiny.fluent/man/ComboBox.Rd                                 |  113 
 shiny.fluent-0.4.0/shiny.fluent/man/CommandBar.Rd                               |  130 
 shiny.fluent-0.4.0/shiny.fluent/man/CommandBarItem.Rd                           |   25 
 shiny.fluent-0.4.0/shiny.fluent/man/ContextualMenu.Rd                           |  303 
 shiny.fluent-0.4.0/shiny.fluent/man/DatePicker.Rd                               |  175 
 shiny.fluent-0.4.0/shiny.fluent/man/DetailsList.Rd                              |  519 -
 shiny.fluent-0.4.0/shiny.fluent/man/Dialog.Rd                                   |  165 
 shiny.fluent-0.4.0/shiny.fluent/man/DocumentCard.Rd                             |  223 
 shiny.fluent-0.4.0/shiny.fluent/man/Dropdown.Rd                                 |  128 
 shiny.fluent-0.4.0/shiny.fluent/man/Facepile.Rd                                 |   63 
 shiny.fluent-0.4.0/shiny.fluent/man/FocusTrapZone.Rd                            |  116 
 shiny.fluent-0.4.0/shiny.fluent/man/FocusZone.Rd                                |  137 
 shiny.fluent-0.4.0/shiny.fluent/man/GroupedList.Rd                              |  213 
 shiny.fluent-0.4.0/shiny.fluent/man/HoverCard.Rd                                |   85 
 shiny.fluent-0.4.0/shiny.fluent/man/Icon.Rd                                     |   48 
 shiny.fluent-0.4.0/shiny.fluent/man/Image.Rd                                    |   35 
 shiny.fluent-0.4.0/shiny.fluent/man/Keytips.Rd                                  |  273 
 shiny.fluent-0.4.0/shiny.fluent/man/Label.Rd                                    |   27 
 shiny.fluent-0.4.0/shiny.fluent/man/Layer.Rd                                    |   82 
 shiny.fluent-0.4.0/shiny.fluent/man/Link.Rd                                     |   27 
 shiny.fluent-0.4.0/shiny.fluent/man/List.Rd                                     |   98 
 shiny.fluent-0.4.0/shiny.fluent/man/MarqueeSelection.Rd                         |  258 
 shiny.fluent-0.4.0/shiny.fluent/man/MessageBar.Rd                               |   43 
 shiny.fluent-0.4.0/shiny.fluent/man/Modal.Rd                                    |  101 
 shiny.fluent-0.4.0/shiny.fluent/man/Nav.Rd                                      |  233 
 shiny.fluent-0.4.0/shiny.fluent/man/OverflowSet.Rd                              |  118 
 shiny.fluent-0.4.0/shiny.fluent/man/Overlay.Rd                                  |   74 
 shiny.fluent-0.4.0/shiny.fluent/man/Panel.Rd                                    |  124 
 shiny.fluent-0.4.0/shiny.fluent/man/PeoplePicker.Rd                             |   73 
 shiny.fluent-0.4.0/shiny.fluent/man/Persona.Rd                                  |  105 
 shiny.fluent-0.4.0/shiny.fluent/man/Pickers.Rd                                  |  334 
 shiny.fluent-0.4.0/shiny.fluent/man/Pivot.Rd                                    |   99 
 shiny.fluent-0.4.0/shiny.fluent/man/ProgressIndicator.Rd                        |   43 
 shiny.fluent-0.4.0/shiny.fluent/man/Rating.Rd                                   |   61 
 shiny.fluent-0.4.0/shiny.fluent/man/ResizeGroup.Rd                              |   90 
 shiny.fluent-0.4.0/shiny.fluent/man/ScrollablePane.Rd                           |   60 
 shiny.fluent-0.4.0/shiny.fluent/man/SearchBox.Rd                                |   65 
 shiny.fluent-0.4.0/shiny.fluent/man/Separator.Rd                                |   23 
 shiny.fluent-0.4.0/shiny.fluent/man/Shimmer.Rd                                  |  103 
 shiny.fluent-0.4.0/shiny.fluent/man/Slider.Rd                                   |   71 
 shiny.fluent-0.4.0/shiny.fluent/man/SpinButton.Rd                               |  125 
 shiny.fluent-0.4.0/shiny.fluent/man/Spinner.Rd                                  |   35 
 shiny.fluent-0.4.0/shiny.fluent/man/Stack.Rd                                    |   67 
 shiny.fluent-0.4.0/shiny.fluent/man/SwatchColorPicker.Rd                        |  161 
 shiny.fluent-0.4.0/shiny.fluent/man/TeachingBubble.Rd                           |   89 
 shiny.fluent-0.4.0/shiny.fluent/man/Text.Rd                                     |   31 
 shiny.fluent-0.4.0/shiny.fluent/man/TextField.Rd                                |  160 
 shiny.fluent-0.4.0/shiny.fluent/man/Theme.Rd                                    |  194 
 shiny.fluent-0.4.0/shiny.fluent/man/Toggle.Rd                                   |   65 
 shiny.fluent-0.4.0/shiny.fluent/man/Tooltip.Rd                                  |   81 
 shiny.fluent-0.4.0/shiny.fluent/man/figures/shiny-fluent.png                    |binary
 shiny.fluent-0.4.0/shiny.fluent/tests/testthat/setup-disable-crashpad.R         |only
 shiny.fluent-0.4.0/shiny.fluent/tests/testthat/test-CommandBar.R                |only
 shiny.fluent-0.4.0/shiny.fluent/tests/testthat/test-utils.R                     |only
 165 files changed, 9118 insertions(+), 8146 deletions(-)

More information about shiny.fluent at CRAN
Permanent link

Package sharx updated to version 1.0-6 with previous version 1.0-5 dated 2016-01-15

Title: Models and Data Sets for the Study of Species-Area Relationships
Description: Hierarchical models for the analysis of species-area relationships (SARs) by combining several data sets and covariates; with a global data set combining individual SAR studies; as described in Solymos and Lele (2012) <doi:10.1111/j.1466-8238.2011.00655.x>.
Author: Peter Solymos
Maintainer: Peter Solymos <psolymos@gmail.com>

Diff between sharx versions 1.0-5 dated 2016-01-15 and 1.0-6 dated 2024-05-21

 DESCRIPTION    |   12 ++++++------
 MD5            |    6 +++---
 inst/CITATION  |   10 ++++++----
 inst/ChangeLog |    4 ++++
 4 files changed, 19 insertions(+), 13 deletions(-)

More information about sharx at CRAN
Permanent link

Package RestRserve updated to version 1.2.3 with previous version 1.2.2 dated 2024-04-15

Title: A Framework for Building HTTP API
Description: Allows to easily create high-performance full featured HTTP APIs from R functions. Provides high-level classes such as 'Request', 'Response', 'Application', 'Middleware' in order to streamline server side application development. Out of the box allows to serve requests using 'Rserve' package, but flexible enough to integrate with other HTTP servers such as 'httpuv'.
Author: Dmitry Selivanov [aut, cre] , Artem Klevtsov [aut] , David Zimmermann [ctb], rexy.ai [cph, fnd]
Maintainer: Dmitry Selivanov <selivanov.dmitriy@gmail.com>

Diff between RestRserve versions 1.2.2 dated 2024-04-15 and 1.2.3 dated 2024-05-21

 DESCRIPTION                   |   10 +++++-----
 MD5                           |    8 ++++----
 inst/doc/ContentHandlers.html |    6 +++---
 inst/doc/Logging.html         |    6 +++---
 inst/doc/Middleware.html      |   16 ++++++++--------
 5 files changed, 23 insertions(+), 23 deletions(-)

More information about RestRserve at CRAN
Permanent link

Package RcmdrPlugin.BWS3 updated to version 0.2-3 with previous version 0.2-2 dated 2024-03-06

Title: R Commander Plug-in for Case 3 Best-Worst Scaling
Description: Adds menu items for case 3 (multi-profile) best-worst scaling (BWS3) to the R Commander. BWS3 is a question-based survey method that designs various combinations of attribute levels (profiles), asks respondents to select the best and worst profiles in each choice set, and then measures preferences for the attribute levels by analyzing the responses. For details on BWS3, refer to Louviere et al. (2015) <doi:10.1017/CBO9781107337855>.
Author: Hideo Aizaki
Maintainer: Hideo Aizaki <azk-r@spa.nifty.com>

Diff between RcmdrPlugin.BWS3 versions 0.2-2 dated 2024-03-06 and 0.2-3 dated 2024-05-21

 DESCRIPTION                     |    9 +-
 MD5                             |   14 +--
 NEWS                            |    5 +
 R/RcmdrPlugin.BWS3.R            |  149 ++++++++++++++++++++++------------------
 inst/etc/menus.txt              |    2 
 man/RcmdrPlugin.BWS3-package.Rd |    1 
 man/bws3Dataset.Rd              |    4 +
 man/bws3Model.Rd                |    2 
 8 files changed, 109 insertions(+), 77 deletions(-)

More information about RcmdrPlugin.BWS3 at CRAN
Permanent link

Package RcmdrPlugin.BWS2 updated to version 0.2-2 with previous version 0.2-1 dated 2024-03-06

Title: R Commander Plug-in for Case 2 Best-Worst Scaling
Description: Adds menu items for case 2 (profile case) best-worst scaling (BWS2) to the R Commander. BWS2 is a question-based survey method that constructs profiles (combinations of attribute levels) using an orthogonal array, asks respondents to select the best and worst levels in each profile, and measures preferences for attribute levels by analyzing the responses. For details, see Aizaki and Fogarty (2019) <doi:10.1016/j.jocm.2019.100171>.
Author: Hideo Aizaki
Maintainer: Hideo Aizaki <azk-r@spa.nifty.com>

Diff between RcmdrPlugin.BWS2 versions 0.2-1 dated 2024-03-06 and 0.2-2 dated 2024-05-21

 DESCRIPTION                     |    9 ++++---
 MD5                             |   10 ++++----
 NEWS                            |    5 ++++
 R/RcmdrPlugin.BWS2.R            |   49 ++++++++++++++++++++--------------------
 man/RcmdrPlugin.BWS2-package.Rd |    1 
 man/bws2Dataset.Rd              |    3 ++
 6 files changed, 44 insertions(+), 33 deletions(-)

More information about RcmdrPlugin.BWS2 at CRAN
Permanent link

Package ptm updated to version 1.0.1 with previous version 0.2.7 dated 2024-05-09

Title: Analyses of Protein Post-Translational Modifications
Description: Contains utilities for the analysis of post-translational modifications (PTMs) in proteins, with particular emphasis on the sulfoxidation of methionine residues. Features include the ability to download, filter and analyze data from the sulfoxidation database 'MetOSite'. Utilities to search and characterize S-aromatic motifs in proteins are also provided. In addition, functions to analyze sequence environments around modifiable residues in proteins can be found. For instance, 'ptm' allows to search for amino acids either overrepresented or avoided around the modifiable residues from the proteins of interest. Functions tailored to test statistical hypothesis related to these differential sequence environments are also implemented. Further and detailed information regarding the methods in this package can be found in (Aledo (2020) <https://metositeptm.com>).
Author: Juan Carlos Aledo [aut, cre]
Maintainer: Juan Carlos Aledo <caledo@uma.es>

Diff between ptm versions 0.2.7 dated 2024-05-09 and 1.0.1 dated 2024-05-21

 ptm-0.2.7/ptm/R/abundance.R                      |only
 ptm-0.2.7/ptm/R/accdpx.R                         |only
 ptm-0.2.7/ptm/R/ddG.R                            |only
 ptm-0.2.7/ptm/R/environment.R                    |only
 ptm-0.2.7/ptm/R/evolutionary.R                   |only
 ptm-0.2.7/ptm/R/go.R                             |only
 ptm-0.2.7/ptm/R/ptmScan.R                        |only
 ptm-0.2.7/ptm/R/ptmplot.R                        |only
 ptm-0.2.7/ptm/man/abundance.Rd                   |only
 ptm-0.2.7/ptm/man/ac.scan.Rd                     |only
 ptm-0.2.7/ptm/man/acc.dssp.Rd                    |only
 ptm-0.2.7/ptm/man/atom.dpx.Rd                    |only
 ptm-0.2.7/ptm/man/bg.go.Rd                       |only
 ptm-0.2.7/ptm/man/ddG.profile.Rd                 |only
 ptm-0.2.7/ptm/man/ddG.ptm.Rd                     |only
 ptm-0.2.7/ptm/man/dis.scan.Rd                    |only
 ptm-0.2.7/ptm/man/dpx.Rd                         |only
 ptm-0.2.7/ptm/man/env.Ztest.Rd                   |only
 ptm-0.2.7/ptm/man/env.extract.Rd                 |only
 ptm-0.2.7/ptm/man/env.matrices.Rd                |only
 ptm-0.2.7/ptm/man/env.plot.Rd                    |only
 ptm-0.2.7/ptm/man/find.aaindex.Rd                |only
 ptm-0.2.7/ptm/man/foldx.assembly.Rd              |only
 ptm-0.2.7/ptm/man/foldx.mut.Rd                   |only
 ptm-0.2.7/ptm/man/foldx.stab.Rd                  |only
 ptm-0.2.7/ptm/man/get.area.Rd                    |only
 ptm-0.2.7/ptm/man/get.go.Rd                      |only
 ptm-0.2.7/ptm/man/gl.scan.Rd                     |only
 ptm-0.2.7/ptm/man/hdfisher.go.Rd                 |only
 ptm-0.2.7/ptm/man/id.features.Rd                 |only
 ptm-0.2.7/ptm/man/id.mapping.Rd                  |only
 ptm-0.2.7/ptm/man/imutant.Rd                     |only
 ptm-0.2.7/ptm/man/kegg.uniprot.Rd                |only
 ptm-0.2.7/ptm/man/me.scan.Rd                     |only
 ptm-0.2.7/ptm/man/mkdssp.Rd                      |only
 ptm-0.2.7/ptm/man/msa.Rd                         |only
 ptm-0.2.7/ptm/man/net.go.Rd                      |only
 ptm-0.2.7/ptm/man/ni.scan.Rd                     |only
 ptm-0.2.7/ptm/man/p.scan.Rd                      |only
 ptm-0.2.7/ptm/man/parse.dssp.Rd                  |only
 ptm-0.2.7/ptm/man/pdb.chain.Rd                   |only
 ptm-0.2.7/ptm/man/pdb.quaternary.Rd              |only
 ptm-0.2.7/ptm/man/pdb.select.Rd                  |only
 ptm-0.2.7/ptm/man/pdb.seq.Rd                     |only
 ptm-0.2.7/ptm/man/pdb.uniprot.Rd                 |only
 ptm-0.2.7/ptm/man/pdb2uniprot.Rd                 |only
 ptm-0.2.7/ptm/man/prot2codon.Rd                  |only
 ptm-0.2.7/ptm/man/ptm.plot.Rd                    |only
 ptm-0.2.7/ptm/man/ptm.scan.Rd                    |only
 ptm-0.2.7/ptm/man/reg.scan.Rd                    |only
 ptm-0.2.7/ptm/man/renum.Rd                       |only
 ptm-0.2.7/ptm/man/renum.meto.Rd                  |only
 ptm-0.2.7/ptm/man/renum.pdb.Rd                   |only
 ptm-0.2.7/ptm/man/res.dpx.Rd                     |only
 ptm-0.2.7/ptm/man/search.go.Rd                   |only
 ptm-0.2.7/ptm/man/sni.scan.Rd                    |only
 ptm-0.2.7/ptm/man/species.kegg.Rd                |only
 ptm-0.2.7/ptm/man/species.mapping.Rd             |only
 ptm-0.2.7/ptm/man/stru.part.Rd                   |only
 ptm-0.2.7/ptm/man/su.scan.Rd                     |only
 ptm-0.2.7/ptm/man/term.go.Rd                     |only
 ptm-0.2.7/ptm/man/ub.scan.Rd                     |only
 ptm-0.2.7/ptm/man/uniprot.kegg.Rd                |only
 ptm-0.2.7/ptm/man/uniprot.pdb.Rd                 |only
 ptm-0.2.7/ptm/man/uniprot2pdb.Rd                 |only
 ptm-0.2.7/ptm/tests/testthat/go                  |only
 ptm-0.2.7/ptm/tests/testthat/pdb                 |only
 ptm-0.2.7/ptm/tests/testthat/plotptm_cache       |only
 ptm-0.2.7/ptm/tests/testthat/test_abundance.R    |only
 ptm-0.2.7/ptm/tests/testthat/test_accdpx.R       |only
 ptm-0.2.7/ptm/tests/testthat/test_ddG.R          |only
 ptm-0.2.7/ptm/tests/testthat/test_environment.R  |only
 ptm-0.2.7/ptm/tests/testthat/test_evolutionary.R |only
 ptm-0.2.7/ptm/tests/testthat/test_go.R           |only
 ptm-0.2.7/ptm/tests/testthat/test_ptmScan.R      |only
 ptm-0.2.7/ptm/tests/testthat/test_ptmplot.R      |only
 ptm-0.2.7/ptm/tests/testthat/xxxx.pdb            |only
 ptm-1.0.1/ptm/DESCRIPTION                        |   20 
 ptm-1.0.1/ptm/MD5                                |  130 --
 ptm-1.0.1/ptm/NAMESPACE                          |   89 -
 ptm-1.0.1/ptm/NEWS.md                            |    4 
 ptm-1.0.1/ptm/R/aa.R                             |  249 -----
 ptm-1.0.1/ptm/R/getseq.R                         | 1127 -----------------------
 ptm-1.0.1/ptm/R/metosite.R                       |   72 +
 ptm-1.0.1/ptm/README.md                          |only
 ptm-1.0.1/ptm/man/aa.at.Rd                       |    2 
 ptm-1.0.1/ptm/man/get.seq.Rd                     |    9 
 ptm-1.0.1/ptm/man/is.at.Rd                       |    2 
 ptm-1.0.1/ptm/man/meto.scan.Rd                   |    4 
 ptm-1.0.1/ptm/tests/testthat/Rplots.pdf          |binary
 ptm-1.0.1/ptm/tests/testthat/test_aa.R           |   91 -
 ptm-1.0.1/ptm/tests/testthat/test_distances.R    |    1 
 ptm-1.0.1/ptm/tests/testthat/test_getseq.R       |  535 ----------
 ptm-1.0.1/ptm/tests/testthat/test_gracefully.R   |    1 
 ptm-1.0.1/ptm/tests/testthat/test_metosite.R     |   10 
 ptm-1.0.1/ptm/tests/testthat/test_saromatic.R    |    6 
 96 files changed, 131 insertions(+), 2221 deletions(-)

More information about ptm at CRAN
Permanent link

Package KSgeneral updated to version 2.0.0 with previous version 1.1.3 dated 2024-03-15

Title: Computing P-Values of the One-Sample K-S Test and the Two-Sample K-S and Kuiper Tests for (Dis)Continuous Null Distribution
Description: Contains functions to compute p-values for the one-sample and two-sample Kolmogorov-Smirnov (KS) tests and the two-sample Kuiper test for any fixed critical level and arbitrary (possibly very large) sample sizes. For the one-sample KS test, this package implements a novel, accurate and efficient method named Exact-KS-FFT, which allows the pre-specified cumulative distribution function under the null hypothesis to be continuous, purely discrete or mixed. In the two-sample case, it is assumed that both samples come from an unspecified (unknown) continuous, purely discrete or mixed distribution, i.e. ties (repeated observations) are allowed, and exact p-values of the KS and the Kuiper tests are computed. Note, the two-sample Kuiper test is often used when data samples are on the line or on the circle (circular data). To cite this package in publication: (for the use of the one-sample KS test) Dimitrina S. Dimitrova, Vladimir K. Kaishev, and Senren Tan. Computing the Kolmogorov-Smirnov Dis [...truncated...]
Author: Dimitrina S. Dimitrova <D.Dimitrova@city.ac.uk>, Yun Jia <yunjia2019@gmail.com>, Vladimir K. Kaishev <Vladimir.Kaishev.1@city.ac.uk>, Senren Tan <raymondtsrtsr@outlook.com>
Maintainer: Dimitrina S. Dimitrova <D.Dimitrova@city.ac.uk>

Diff between KSgeneral versions 1.1.3 dated 2024-03-15 and 2.0.0 dated 2024-05-21

 DESCRIPTION                 |   16 ++---
 MD5                         |   19 ++++--
 R/KS2sample.R               |only
 R/Kuiper2sample.R           |only
 R/RcppExports.R             |   16 +++++
 build/partial.rdb           |binary
 man/KS2sample.Rd            |only
 man/KS2sample_Rcpp.Rd       |only
 man/KS2sample_c_Rcpp.Rd     |only
 man/Kuiper2sample.Rd        |only
 man/Kuiper2sample_Rcpp.Rd   |only
 man/Kuiper2sample_c_Rcpp.Rd |only
 man/ksgeneral-package.Rd    |  134 ++++++++++++++++++++++++++------------------
 src/RcppExports.cpp         |   66 +++++++++++++++++++++
 src/k2sample_stable1.cpp    |only
 15 files changed, 184 insertions(+), 67 deletions(-)

More information about KSgeneral at CRAN
Permanent link

Package bSims updated to version 0.3-2 with previous version 0.3-0 dated 2021-10-07

Title: Agent-Based Bird Point Count Simulator
Description: A highly scientific and utterly addictive bird point count simulator to test statistical assumptions, aid survey design, and have fun while doing it (Solymos 2024 <doi:10.1007/s42977-023-00183-2>). The simulations follow time-removal and distance sampling models based on Matsuoka et al. (2012) <doi:10.1525/auk.2012.11190>, Solymos et al. (2013) <doi:10.1111/2041-210X.12106>, and Solymos et al. (2018) <doi:10.1650/CONDOR-18-32.1>, and sound attenuation experiments by Yip et al. (2017) <doi:10.1650/CONDOR-16-93.1>.
Author: Peter Solymos [aut, cre]
Maintainer: Peter Solymos <psolymos@gmail.com>

Diff between bSims versions 0.3-0 dated 2021-10-07 and 0.3-2 dated 2024-05-21

 DESCRIPTION                    |   17 
 MD5                            |   45 -
 NEWS.md                        |   11 
 R/bsims_all.R                  |   22 
 R/bsims_populate.R             |    8 
 R/get_detections.R             |   11 
 R/print.bsims_all.R            |   36 
 build/vignette.rds             |binary
 inst/CITATION                  |only
 inst/WORDLIST                  |only
 inst/bsims-paper               |only
 inst/doc/bsims01-intro.R       |   18 
 inst/doc/bsims01-intro.Rmd     |   12 
 inst/doc/bsims01-intro.html    |  585 ++++++++++---
 inst/doc/bsims02-layers.R      |  590 ++++++-------
 inst/doc/bsims02-layers.Rmd    |    3 
 inst/doc/bsims02-layers.html   | 1733 ++++++++++++++++++++++++++---------------
 inst/doc/bsims03-workflow.R    |  183 ++--
 inst/doc/bsims03-workflow.Rmd  |   75 +
 inst/doc/bsims03-workflow.html |  900 ++++++++++++++-------
 inst/shiny/rsconnect           |only
 man/getters.Rd                 |    5 
 vignettes/bsims01-intro.Rmd    |   12 
 vignettes/bsims02-layers.Rmd   |    3 
 vignettes/bsims03-workflow.Rmd |   75 +
 25 files changed, 2859 insertions(+), 1485 deletions(-)

More information about bSims at CRAN
Permanent link

Package batchmix updated to version 2.2.1 with previous version 2.2.0 dated 2024-04-18

Title: Semi-Supervised Bayesian Mixture Models Incorporating Batch Correction
Description: Semi-supervised and unsupervised Bayesian mixture models that simultaneously infer the cluster/class structure and a batch correction. Densities available are the multivariate normal and the multivariate t. The model sampler is implemented in C++. This package is aimed at analysis of low-dimensional data generated across several batches. See Coleman et al. (2022) <doi:10.1101/2022.01.14.476352> for details of the model.
Author: Stephen Coleman [aut, cre], Paul Kirk [aut], Chris Wallace [aut]
Maintainer: Stephen Coleman <stcolema@tcd.ie>

Diff between batchmix versions 2.2.0 dated 2024-04-18 and 2.2.1 dated 2024-05-21

 DESCRIPTION                     |    6 -
 MD5                             |   16 +-
 build/vignette.rds              |binary
 inst/doc/batchmix_workflow.html |  231 +++++++++++++++++++---------------------
 man/batchmix-package.Rd         |    4 
 src/Makevars                    |    1 
 src/Makevars.win                |    1 
 src/sampler.h                   |    2 
 src/semisupervisedSampler.cpp   |    5 
 9 files changed, 132 insertions(+), 134 deletions(-)

More information about batchmix at CRAN
Permanent link

Package RcmdrPlugin.BWS1 updated to version 0.2-2 with previous version 0.2-1 dated 2024-03-06

Title: R Commander Plug-in for Case 1 Best-Worst Scaling
Description: Adds menu items to the R Commander for implementing case 1 (object case) best-worst scaling (BWS1) from designing choice sets to measuring preferences for items. BWS1 is a question-based survey method that constructs various combinations of items (choice sets) using the experimental designs, asks respondents to select the best and worst items in each choice set, and then measures preferences for the items by analyzing the responses. For details on BWS1, refer to Louviere et al. (2015) <doi:10.1017/CBO9781107337855>.
Author: Hideo Aizaki
Maintainer: Hideo Aizaki <azk-r@spa.nifty.com>

Diff between RcmdrPlugin.BWS1 versions 0.2-1 dated 2024-03-06 and 0.2-2 dated 2024-05-21

 DESCRIPTION                     |    9 +++++----
 MD5                             |   14 +++++++-------
 NEWS                            |    5 +++++
 R/RcmdrPlugin.BWS1.R            |   37 +++++++++++++++++++++++--------------
 inst/etc/menus.txt              |    2 +-
 man/RcmdrPlugin.BWS1-package.Rd |    1 +
 man/bws1Dataset.Rd              |    3 +++
 man/bws1Model.Rd                |    2 +-
 8 files changed, 46 insertions(+), 27 deletions(-)

More information about RcmdrPlugin.BWS1 at CRAN
Permanent link

Package psychonetrics updated to version 0.12 with previous version 0.11.6 dated 2024-04-05

Title: Structural Equation Modeling and Confirmatory Network Analysis
Description: Multi-group (dynamical) structural equation models in combination with confirmatory network models from cross-sectional, time-series and panel data <doi:10.31234/osf.io/8ha93>. Allows for confirmatory testing and fit as well as exploratory model search.
Author: Sacha Epskamp
Maintainer: Sacha Epskamp <mail@sachaepskamp.com>

Diff between psychonetrics versions 0.11.6 dated 2024-04-05 and 0.12 dated 2024-05-21

 DESCRIPTION                                     |    6 
 MD5                                             |  149 ++-
 NAMESPACE                                       |   13 
 NEWS                                            |   26 
 R/00_codeOrganization.R                         |    2 
 R/02_algebrahelpers_Solve.R                     |    4 
 R/02_algebrahelpers_checkJacobian.R             |   24 
 R/02_algebrahelpers_maxcor.R                    |only
 R/03_modelformation_fixAdj.R                    |    5 
 R/03_modelformation_fixMatrix.R                 |    6 
 R/03_modelformation_generateParameterTable.R    |  139 +--
 R/03_modelformation_matrixSetup_cholesky.R      |    1 
 R/03_modelformation_matrixSetup_kappa.R         |    5 
 R/03_modelformation_matrixSetup_lambda.R        |  318 ++++----
 R/03_modelformation_matrixSetup_omega.R         |   42 -
 R/03_modelformation_samplestats_norawts.R       |    5 
 R/03_modelformation_sparseordense.R             |    3 
 R/03_modelformation_tsData.R                    |    8 
 R/04_generalfit_VCOV.R                          |    5 
 R/04_modelformation_matrixSetup_flexcov.R       |   10 
 R/05_MLestimator_gradient_Gauss.R               |    2 
 R/07_FIMLestimator_gradient_Gauss.R             |    4 
 R/14_varcov_derivatives.R                       |    3 
 R/15_lvm_identify.R                             |    2 
 R/RcppExports.R                                 |   20 
 R/a_models_Ising.R                              |    2 
 R/a_models_bifactor.R                           |   10 
 R/a_models_dlvm1.R                              |  851 +++++++++++++++++----
 R/a_models_lvm.R                                |   20 
 R/a_models_meta_varcov.R                        |    6 
 R/a_models_ml_lvm.R                             |   37 
 R/a_models_ml_tsdlvm1.R                         |    2 
 R/a_models_precision.R                          |  272 ------
 R/a_models_tsdlvm1.R                            |   14 
 R/a_models_var1.R                               |    4 
 R/a_models_varcov.R                             |   49 -
 R/b_modelexpansions_addSEs.R                    |   18 
 R/b_modelexpansions_addfit.R                    |    2 
 R/c_runmodel.R                                  |  944 +++++++++++++++---------
 R/e_modelmodifications_fixstart.R               |only
 R/e_modelmodifications_intersectionmodel.R      |  131 +++
 R/e_modelmodifications_partialprune.R           |  145 ++-
 R/e_modelmodifications_prune.R                  |    8 
 R/e_modelmodifications_transmod.R               |only
 R/e_modelmodifications_unionmodel.R             |  129 +++
 R/f_conveneince_changedata.R                    |    2 
 R/f_convenience_bootstrap.R                     |    2 
 R/f_convenience_getmatrix.R                     |   27 
 R/f_convenience_logbook.R                       |only
 R/f_convenience_parameters.R                    |    1 
 build/partial.rdb                               |binary
 man/Ising.Rd                                    |    8 
 man/MIs.Rd                                      |    2 
 man/diagnostics.Rd                              |only
 man/dlvm1_family.Rd                             |   93 +-
 man/fit.Rd                                      |    2 
 man/fixstart.Rd                                 |only
 man/getVCOV.Rd                                  |    5 
 man/logbook.Rd                                  |only
 man/lvm_family.Rd                               |   26 
 man/meta_varcov.Rd                              |   28 
 man/ml_lvm.Rd                                   |   62 -
 man/modelupdate.Rd                              |    5 
 man/parameters.Rd                               |    2 
 man/partialprune.Rd                             |   15 
 man/psychonetrics_log-class.Rd                  |only
 man/runmodel.Rd                                 |   17 
 man/transmod.Rd                                 |only
 man/tsdlvm1_family.Rd                           |   50 -
 man/unionmodel_intersectionmodel.Rd             |    7 
 man/var1_family.Rd                              |   16 
 man/varcov_family.Rd                            |   34 
 src/02_algebrahelpers_RcppHelpers.cpp           |  483 ++++--------
 src/02_algebrahelpers_RcppHelpers.h             |   13 
 src/05_MLestimator_fit_Gauss_cpp.cpp            |    1 
 src/07_FIMLestimator_fitfunction_cppversion.cpp |    1 
 src/18_dlvm1_implied_cpp.cpp                    |    1 
 src/18_dlvm1_prepare_cpp.cpp                    |    2 
 src/RcppExports.cpp                             |   46 -
 src/b_modelexpansions_addSEs_cpp.cpp            |   44 +
 80 files changed, 2754 insertions(+), 1687 deletions(-)

More information about psychonetrics at CRAN
Permanent link

Package RcmdrPlugin.DCE updated to version 0.2-3 with previous version 0.2-2 dated 2024-03-06

Title: R Commander Plug-in for Discrete Choice Experiments
Description: Adds menu items for discrete choice experiments (DCEs) to the R Commander. DCE is a question-based survey method that designs various combinations (profiles) of attribute levels using the experimental designs, asks respondents to select the most preferred profile in each choice set, and then measures preferences for the attribute levels by analyzing the responses. For details on DCEs, refer to Louviere et al. (2000) <doi:10.1017/CBO9780511753831>.
Author: Hideo Aizaki
Maintainer: Hideo Aizaki <azk-r@spa.nifty.com>

Diff between RcmdrPlugin.DCE versions 0.2-2 dated 2024-03-06 and 0.2-3 dated 2024-05-21

 DESCRIPTION                    |    9 +-
 MD5                            |   12 +--
 NEWS                           |    5 +
 R/RcmdrPlugin.DCE.R            |  158 +++++++++++++++++++++++------------------
 inst/etc/menus.txt             |    2 
 man/RcmdrPlugin.DCE-package.Rd |    1 
 man/dceModel.Rd                |    2 
 7 files changed, 109 insertions(+), 80 deletions(-)

More information about RcmdrPlugin.DCE at CRAN
Permanent link

Package editbl updated to version 1.0.5 with previous version 1.0.4 dated 2024-05-07

Title: 'DT' Extension for CRUD (Create, Read, Update, Delete) Applications in 'shiny'
Description: The core of this package is a function eDT() which enhances DT::datatable() such that it can be used to interactively modify data in 'shiny'. By the use of generic 'dplyr' methods it supports many types of data storage, with relational databases ('dbplyr') being the main use case.
Author: Jasper Schelfhout [aut, cre], Maxim Nazarov [rev], Daan Seynaeve [rev], Lennart Tuijnder [rev]
Maintainer: Jasper Schelfhout <jasper.schelfhout@openanalytics.eu>

Diff between editbl versions 1.0.4 dated 2024-05-07 and 1.0.5 dated 2024-05-21

 DESCRIPTION                          |    8 -
 MD5                                  |   34 +++---
 inst/NEWS                            |    2 
 inst/doc/howto_relational_db.R       |    6 -
 inst/doc/howto_relational_db.html    |  198 ++++++++++++++++-------------------
 inst/doc/howto_relational_db.rmd     |    6 -
 inst/doc/howto_relational_db_dm.R    |    2 
 inst/doc/howto_relational_db_dm.html |   10 -
 inst/doc/howto_relational_db_dm.rmd  |    2 
 inst/doc/howto_switch_from_DT.R      |    4 
 inst/doc/howto_switch_from_DT.html   |   41 ++-----
 inst/doc/howto_switch_from_DT.rmd    |    4 
 vignettes/howto_relational_db.rmd    |    6 -
 vignettes/howto_relational_db_dm.rmd |    2 
 vignettes/howto_switch_from_DT.rmd   |    4 
 vignettes/screenshots                |only
 16 files changed, 160 insertions(+), 169 deletions(-)

More information about editbl at CRAN
Permanent link

Package RcmdrPlugin.DCCV updated to version 0.1-5 with previous version 0.1-4 dated 2024-03-05

Title: R Commander Plug-in for Dichotomous Choice Contingent Valuation
Description: Adds menu items to the R Commander for parametric analysis of dichotomous choice contingent valuation (DCCV) data. CV is a question-based survey method to elicit individuals' preferences for goods and services. This package depends on functions regarding parametric DCCV analysis in the package DCchoice. See Carson and Hanemann (2005) <doi:10.1016/S1574-0099(05)02017-6> for DCCV.
Author: Hideo Aizaki
Maintainer: Hideo Aizaki <azk-r@spa.nifty.com>

Diff between RcmdrPlugin.DCCV versions 0.1-4 dated 2024-03-05 and 0.1-5 dated 2024-05-21

 DESCRIPTION                     |    9 +++++----
 MD5                             |    8 ++++----
 NEWS                            |    5 +++++
 R/RcmdrPlugin.DCCV.R            |   38 +++++++++++++++++++++-----------------
 man/RcmdrPlugin.DCCV-package.Rd |    3 ++-
 5 files changed, 37 insertions(+), 26 deletions(-)

More information about RcmdrPlugin.DCCV at CRAN
Permanent link

Package duckplyr updated to version 0.4.0 with previous version 0.3.2 dated 2024-03-17

Title: A 'DuckDB'-Backed Version of 'dplyr'
Description: A drop-in replacement for 'dplyr', powered by 'DuckDB' for performance. Also defines a set of generics that provide a low-level implementer's interface for the high-level user interface of 'dplyr'.
Author: Hannes Muehleisen [aut] , Kirill Mueller [aut, cre] , Posit Software, PBC [cph, fnd]
Maintainer: Kirill Mueller <kirill@cynkra.com>

Diff between duckplyr versions 0.3.2 dated 2024-03-17 and 0.4.0 dated 2024-05-21

 DESCRIPTION                          |   11 
 MD5                                  |  101 -
 NAMESPACE                            |  106 -
 NEWS.md                              |   45 
 R/aaa-meta.R                         |    1 
 R/anti_join.R                        |    4 
 R/count.R                            |    2 
 R/duckplyr-package.R                 |  292 ++-
 R/fallback.R                         |    2 
 R/full_join.R                        |    4 
 R/head.R                             |   16 
 R/inner_join.R                       |    4 
 R/intersect.R                        |    1 
 R/io-csv.R                           |   13 
 R/io.R                               |    3 
 R/left_join.R                        |    4 
 R/relational-duckdb.R                |   51 
 R/relational.R                       |   91 -
 R/relocate.R                         |    2 
 R/right_join.R                       |    4 
 R/semi_join.R                        |    4 
 R/setdiff.R                          |    1 
 R/summarise.R                        |    1 
 R/symdiff.R                          |    1 
 R/union_all.R                        |    1 
 R/zzz-methods.R                      |    9 
 R/zzz.R                              |   14 
 README.md                            |   73 
 man/df_from_file.Rd                  |   13 
 man/reexports.Rd                     |   76 
 tests/testthat/_snaps/across.md      |    4 
 tests/testthat/_snaps/fallback.md    |   32 
 tests/testthat/_snaps/join.md        |   18 
 tests/testthat/_snaps/relational.md  |   16 
 tests/testthat/_snaps/sets.md        |   19 
 tests/testthat/_snaps/telemetry.md   |  120 +
 tests/testthat/setup.R               |    2 
 tests/testthat/test-across.R         |    3 
 tests/testthat/test-altrep.R         |only
 tests/testthat/test-as_duckplyr_df.R |  552 ++++--
 tests/testthat/test-deprec-do.R      |    1 
 tests/testthat/test-duckdb.R         |only
 tests/testthat/test-fallback.R       |    6 
 tests/testthat/test-filter.R         |    2 
 tests/testthat/test-group-map.R      |    2 
 tests/testthat/test-head.R           |only
 tests/testthat/test-join.R           |    3 
 tests/testthat/test-mutate.R         |    1 
 tests/testthat/test-rel_api.R        | 3114 ++++++++++++++++++++++++++++-------
 tests/testthat/test-relational.R     |   12 
 tests/testthat/test-sets.R           |    1 
 tests/testthat/test-summarise.R      |    1 
 tests/testthat/test-telemetry.R      |   84 
 53 files changed, 3852 insertions(+), 1091 deletions(-)

More information about duckplyr at CRAN
Permanent link

Package radiant updated to version 1.6.6 with previous version 1.6.1 dated 2023-12-17

Title: Business Analytics using R and Shiny
Description: A platform-independent browser-based interface for business analytics in R, based on the shiny package. The application combines the functionality of 'radiant.data', 'radiant.design', 'radiant.basics', 'radiant.model', and 'radiant.multivariate'.
Author: Vincent Nijs [aut, cre]
Maintainer: Vincent Nijs <radiant@rady.ucsd.edu>

Diff between radiant versions 1.6.1 dated 2023-12-17 and 1.6.6 dated 2024-05-21

 radiant-1.6.1/radiant/inst/app/rsconnect/rsm-compute-dev2.ucsd.edu |only
 radiant-1.6.6/radiant/DESCRIPTION                                  |   18 +++++-----
 radiant-1.6.6/radiant/MD5                                          |   13 +++----
 radiant-1.6.6/radiant/NEWS.md                                      |    9 +++--
 radiant-1.6.6/radiant/build/build.R                                |    8 ++--
 radiant-1.6.6/radiant/build/build_mac.R                            |    3 -
 radiant-1.6.6/radiant/build/vignette.rds                           |binary
 radiant-1.6.6/radiant/inst/doc/programming.html                    |   14 +++----
 8 files changed, 34 insertions(+), 31 deletions(-)

More information about radiant at CRAN
Permanent link

Package ggsci updated to version 3.1.0 with previous version 3.0.3 dated 2024-03-25

Title: Scientific Journal and Sci-Fi Themed Color Palettes for 'ggplot2'
Description: A collection of 'ggplot2' color palettes inspired by plots in scientific journals, data visualization libraries, science fiction movies, and TV shows.
Author: Nan Xiao [aut, cre] , Joshua Cook [ctb], Clara Jegousse [ctb], Hui Chen [ctb], Miaozhu Li [ctb]
Maintainer: Nan Xiao <me@nanx.me>

Diff between ggsci versions 3.0.3 dated 2024-03-25 and 3.1.0 dated 2024-05-21

 DESCRIPTION                        |    8 +
 MD5                                |  157 +++++++++++++++++++------------------
 NAMESPACE                          |    4 
 NEWS.md                            |   13 +++
 R/continuous-gsea.R                |   27 ++----
 R/continuous-material.R            |   75 ++++++++---------
 R/discrete-aaas.R                  |   22 ++---
 R/discrete-bmj.R                   |only
 R/discrete-cosmic.R                |   31 +++----
 R/discrete-d3.R                    |   33 +++----
 R/discrete-flatui.R                |   25 ++---
 R/discrete-frontiers.R             |   20 ++--
 R/discrete-futurama.R              |   22 ++---
 R/discrete-igv.R                   |   24 ++---
 R/discrete-jama.R                  |   22 ++---
 R/discrete-jco.R                   |   22 ++---
 R/discrete-lancet.R                |   22 ++---
 R/discrete-locuszoom.R             |   22 ++---
 R/discrete-nejm.R                  |   22 ++---
 R/discrete-npg.R                   |   22 ++---
 R/discrete-rickandmorty.R          |   22 ++---
 R/discrete-simpsons.R              |   22 ++---
 R/discrete-startrek.R              |   22 ++---
 R/discrete-tron.R                  |   22 ++---
 R/discrete-uchicago.R              |   30 +++----
 R/discrete-ucscgb.R                |   20 ++--
 R/sysdata.rda                      |binary
 README.md                          |    4 
 build/vignette.rds                 |binary
 inst/WORDLIST                      |only
 inst/doc/ggsci.R                   |    5 +
 inst/doc/ggsci.Rmd                 |   16 +++
 inst/doc/ggsci.html                |   97 +++++++++++++---------
 man/figures/README-ggsci-bmj-1.png |only
 man/ggsci-package.Rd               |    1 
 man/pal_aaas.Rd                    |    7 -
 man/pal_bmj.Rd                     |only
 man/pal_cosmic.Rd                  |   21 ++--
 man/pal_d3.Rd                      |   20 ++--
 man/pal_flatui.Rd                  |   19 ++--
 man/pal_frontiers.Rd               |    8 -
 man/pal_futurama.Rd                |    7 -
 man/pal_gsea.Rd                    |    7 -
 man/pal_igv.Rd                     |   13 +--
 man/pal_jama.Rd                    |    7 -
 man/pal_jco.Rd                     |    7 -
 man/pal_lancet.Rd                  |    7 -
 man/pal_locuszoom.Rd               |    7 -
 man/pal_material.Rd                |   19 ++--
 man/pal_nejm.Rd                    |    7 -
 man/pal_npg.Rd                     |    7 -
 man/pal_rickandmorty.Rd            |    7 -
 man/pal_simpsons.Rd                |    7 -
 man/pal_startrek.Rd                |    7 -
 man/pal_tron.Rd                    |    7 -
 man/pal_uchicago.Rd                |   17 ++--
 man/pal_ucscgb.Rd                  |    7 -
 man/rgb_gsea.Rd                    |    7 -
 man/rgb_material.Rd                |   19 ++--
 man/scale_aaas.Rd                  |   11 +-
 man/scale_bmj.Rd                   |only
 man/scale_cosmic.Rd                |   22 +++--
 man/scale_d3.Rd                    |   24 ++---
 man/scale_flatui.Rd                |   21 ++--
 man/scale_frontiers.Rd             |   10 +-
 man/scale_futurama.Rd              |   11 +-
 man/scale_gsea.Rd                  |   11 +-
 man/scale_igv.Rd                   |   17 ++--
 man/scale_jama.Rd                  |   11 +-
 man/scale_jco.Rd                   |   11 +-
 man/scale_lancet.Rd                |   11 +-
 man/scale_locuszoom.Rd             |   11 +-
 man/scale_material.Rd              |   21 ++--
 man/scale_nejm.Rd                  |   11 +-
 man/scale_npg.Rd                   |   11 +-
 man/scale_rickandmorty.Rd          |   11 +-
 man/scale_simpsons.Rd              |   11 +-
 man/scale_startrek.Rd              |   11 +-
 man/scale_tron.Rd                  |   11 +-
 man/scale_uchicago.Rd              |   21 ++--
 man/scale_ucscgb.Rd                |   11 +-
 vignettes/ggsci.Rmd                |   16 +++
 82 files changed, 712 insertions(+), 689 deletions(-)

More information about ggsci at CRAN
Permanent link

Package deps updated to version 0.3.0 with previous version 0.2.0 dated 2023-06-27

Title: Dependency Management with 'roxygen'-Style Comments
Description: Manage your source code dependencies by decorating your existing R code with special, 'roxygen'-style comments.
Author: Peter Solymos [aut, cre] , Analythium Solutions Inc. [cph, fnd]
Maintainer: Peter Solymos <peter@analythium.io>

Diff between deps versions 0.2.0 dated 2023-06-27 and 0.3.0 dated 2024-05-21

 DESCRIPTION         |   12 +++---
 MD5                 |   14 +++----
 NEWS.md             |    5 ++
 R/create.R          |    6 ---
 R/utils.R           |   98 ++++++++++++++--------------------------------------
 inst/WORDLIST       |    2 -
 man/create.Rd       |    6 ---
 man/deps-package.Rd |    1 
 8 files changed, 46 insertions(+), 98 deletions(-)

More information about deps at CRAN
Permanent link

Package StanHeaders updated to version 2.32.8 with previous version 2.32.7 dated 2024-04-25

Title: C++ Header Files for Stan
Description: The C++ header files of the Stan project are provided by this package, but it contains little R code or documentation. The main reference is the vignette. There is a shared object containing part of the 'CVODES' library, but its functionality is not accessible from R. 'StanHeaders' is primarily useful for developers who want to utilize the 'LinkingTo' directive of their package's DESCRIPTION file to build on the Stan library without incurring unnecessary dependencies. The Stan project develops a probabilistic programming language that implements full or approximate Bayesian statistical inference via Markov Chain Monte Carlo or 'variational' methods and implements (optionally penalized) maximum likelihood estimation via optimization. The Stan library includes an advanced automatic differentiation scheme, 'templated' statistical and linear algebra functions that can handle the automatically 'differentiable' scalar types (and doubles, 'ints', etc.), and a parser for the Stan language. The [...truncated...]
Author: Ben Goodrich [cre, aut], Joshua Pritikin [ctb], Andrew Gelman [aut], Bob Carpenter [aut], Matt Hoffman [aut], Daniel Lee [aut], Michael Betancourt [aut], Marcus Brubaker [aut], Jiqiang Guo [aut], Peter Li [aut], Allen Riddell [aut], Marco Inacio [aut [...truncated...]
Maintainer: Ben Goodrich <benjamin.goodrich@columbia.edu>

Diff between StanHeaders versions 2.32.7 dated 2024-04-25 and 2.32.8 dated 2024-05-21

 DESCRIPTION                                        |    8 ++++----
 MD5                                                |   10 +++++-----
 inst/doc/stanmath.html                             |    6 +++---
 inst/include/stan/math/prim/fun/max.hpp            |    2 +-
 inst/include/stan/math/prim/fun/min.hpp            |    2 +-
 inst/include/stan/math/prim/prob/poisson_lccdf.hpp |    3 +--
 6 files changed, 15 insertions(+), 16 deletions(-)

More information about StanHeaders at CRAN
Permanent link

Mon, 20 May 2024

Package minimaxApprox updated to version 0.4.2 with previous version 0.4.1 dated 2024-02-29

Title: Implementation of Remez Algorithm for Polynomial and Rational Function Approximation
Description: Implements the algorithm of Remez (1962) for polynomial minimax approximation and of Cody et al. (1968) <doi:10.1007/BF02162506> for rational minimax approximation.
Author: Avraham Adler [aut, cre, cph]
Maintainer: Avraham Adler <Avraham.Adler@gmail.com>

Diff between minimaxApprox versions 0.4.1 dated 2024-02-29 and 0.4.2 dated 2024-05-20

 minimaxApprox-0.4.1/minimaxApprox/inst/tinytest/test_version.R          |only
 minimaxApprox-0.4.2/minimaxApprox/DESCRIPTION                           |    8 +--
 minimaxApprox-0.4.2/minimaxApprox/MD5                                   |   24 +++++-----
 minimaxApprox-0.4.2/minimaxApprox/R/Chebyshev.R                         |    4 -
 minimaxApprox-0.4.2/minimaxApprox/R/MiniMaxApprox.R                     |    4 +
 minimaxApprox-0.4.2/minimaxApprox/R/RemezPolynomial.R                   |    3 -
 minimaxApprox-0.4.2/minimaxApprox/R/RemezRational.R                     |    3 -
 minimaxApprox-0.4.2/minimaxApprox/build/partial.rdb                     |binary
 minimaxApprox-0.4.2/minimaxApprox/inst/CITATION                         |    2 
 minimaxApprox-0.4.2/minimaxApprox/inst/NEWS.Rd                          |   13 +++++
 minimaxApprox-0.4.2/minimaxApprox/inst/tinytest/test_package_metadata.R |only
 minimaxApprox-0.4.2/minimaxApprox/man/MiniMaxApprox.Rd                  |   13 ++---
 minimaxApprox-0.4.2/minimaxApprox/man/minimaxEval.Rd                    |    2 
 minimaxApprox-0.4.2/minimaxApprox/src/Chebyshev.c                       |   18 ++++---
 14 files changed, 57 insertions(+), 37 deletions(-)

More information about minimaxApprox at CRAN
Permanent link

Package surveytable updated to version 0.9.4 with previous version 0.9.2 dated 2024-01-18

Title: Formatted Survey Estimates
Description: Short and understandable commands that generate tabulated, formatted, and rounded survey estimates. Mostly a wrapper for the 'survey' package (Lumley (2004) <doi:10.18637/jss.v009.i08> <https://CRAN.R-project.org/package=survey>) that identifies low-precision estimates using the National Center for Health Statistics (NCHS) presentation standards (Parker et al. (2017) <https://www.cdc.gov/nchs/data/series/sr_02/sr02_175.pdf>, Parker et al. (2023) <doi:10.15620/cdc:124368>).
Author: Alex Strashny [aut, cre]
Maintainer: Alex Strashny <AStrashny@cdc.gov>

Diff between surveytable versions 0.9.2 dated 2024-01-18 and 0.9.4 dated 2024-05-20

 surveytable-0.9.2/surveytable/R/z_present.R                                                              |only
 surveytable-0.9.4/surveytable/DESCRIPTION                                                                |   17 
 surveytable-0.9.4/surveytable/MD5                                                                        |  119 
 surveytable-0.9.4/surveytable/NAMESPACE                                                                  |    9 
 surveytable-0.9.4/surveytable/NEWS.md                                                                    |   14 
 surveytable-0.9.4/surveytable/R/codebook.R                                                               |only
 surveytable-0.9.4/surveytable/R/print.surveytable_table.R                                                |  193 -
 surveytable-0.9.4/surveytable/R/set_count.R                                                              |  108 
 surveytable-0.9.4/surveytable/R/set_output.R                                                             |   45 
 surveytable-0.9.4/surveytable/R/set_survey.R                                                             |   82 
 surveytable-0.9.4/surveytable/R/survey_subset.R                                                          |    2 
 surveytable-0.9.4/surveytable/R/surveytable.R                                                            |   88 
 surveytable-0.9.4/surveytable/R/svyciprop_adjusted.R                                                     |   13 
 surveytable-0.9.4/surveytable/R/tab.R                                                                    |  587 +--
 surveytable-0.9.4/surveytable/R/tab_rate.R                                                               |  197 -
 surveytable-0.9.4/surveytable/R/tab_subset.R                                                             |  520 +--
 surveytable-0.9.4/surveytable/R/tab_subset_rate.R                                                        |  229 -
 surveytable-0.9.4/surveytable/R/total.R                                                                  |  162 -
 surveytable-0.9.4/surveytable/R/total_rate.R                                                             |   96 
 surveytable-0.9.4/surveytable/R/var_all.R                                                                |only
 surveytable-0.9.4/surveytable/R/var_any.R                                                                |    2 
 surveytable-0.9.4/surveytable/R/var_case.R                                                               |   15 
 surveytable-0.9.4/surveytable/R/var_cross.R                                                              |  100 
 surveytable-0.9.4/surveytable/R/var_not.R                                                                |only
 surveytable-0.9.4/surveytable/R/z_deffK.R                                                                |only
 surveytable-0.9.4/surveytable/R/z_lpe.R                                                                  |only
 surveytable-0.9.4/surveytable/R/z_tab_numeric.R                                                          |   66 
 surveytable-0.9.4/surveytable/R/z_test_factor.R                                                          |  122 
 surveytable-0.9.4/surveytable/R/z_test_table.R                                                           |   36 
 surveytable-0.9.4/surveytable/R/zzz.R                                                                    |  125 
 surveytable-0.9.4/surveytable/README.md                                                                  |  100 
 surveytable-0.9.4/surveytable/build/partial.rdb                                                          |binary
 surveytable-0.9.4/surveytable/build/vignette.rds                                                         |binary
 surveytable-0.9.4/surveytable/inst/WORDLIST                                                              |    4 
 surveytable-0.9.4/surveytable/inst/doc/Example-National-Ambulatory-Medical-Care-Survey-NAMCS-tables.R    |   77 
 surveytable-0.9.4/surveytable/inst/doc/Example-National-Ambulatory-Medical-Care-Survey-NAMCS-tables.Rmd  |  528 +--
 surveytable-0.9.4/surveytable/inst/doc/Example-National-Ambulatory-Medical-Care-Survey-NAMCS-tables.html | 1545 +++++++---
 surveytable-0.9.4/surveytable/inst/doc/surveytable.R                                                     |   82 
 surveytable-0.9.4/surveytable/inst/doc/surveytable.Rmd                                                   |  915 ++---
 surveytable-0.9.4/surveytable/inst/doc/surveytable.html                                                  | 1440 ++++++---
 surveytable-0.9.4/surveytable/man/codebook.Rd                                                            |only
 surveytable-0.9.4/surveytable/man/print.surveytable_table.Rd                                             |   60 
 surveytable-0.9.4/surveytable/man/set_count_1k.Rd                                                        |    1 
 surveytable-0.9.4/surveytable/man/set_output.Rd                                                          |    8 
 surveytable-0.9.4/surveytable/man/set_survey.Rd                                                          |   33 
 surveytable-0.9.4/surveytable/man/show_options.Rd                                                        |    1 
 surveytable-0.9.4/surveytable/man/surveytable-options.Rd                                                 |   64 
 surveytable-0.9.4/surveytable/man/surveytable-package.Rd                                                 |    2 
 surveytable-0.9.4/surveytable/man/svyciprop_adjusted.Rd                                                  |   16 
 surveytable-0.9.4/surveytable/man/tab.Rd                                                                 |    7 
 surveytable-0.9.4/surveytable/man/tab_rate.Rd                                                            |    6 
 surveytable-0.9.4/surveytable/man/tab_subset.Rd                                                          |    9 
 surveytable-0.9.4/surveytable/man/tab_subset_rate.Rd                                                     |    6 
 surveytable-0.9.4/surveytable/man/total.Rd                                                               |    2 
 surveytable-0.9.4/surveytable/man/total_rate.Rd                                                          |    2 
 surveytable-0.9.4/surveytable/man/var_all.Rd                                                             |only
 surveytable-0.9.4/surveytable/man/var_any.Rd                                                             |    6 
 surveytable-0.9.4/surveytable/man/var_case.Rd                                                            |   16 
 surveytable-0.9.4/surveytable/man/var_collapse.Rd                                                        |    4 
 surveytable-0.9.4/surveytable/man/var_copy.Rd                                                            |    4 
 surveytable-0.9.4/surveytable/man/var_cross.Rd                                                           |    4 
 surveytable-0.9.4/surveytable/man/var_cut.Rd                                                             |    4 
 surveytable-0.9.4/surveytable/man/var_not.Rd                                                             |only
 surveytable-0.9.4/surveytable/vignettes/Example-National-Ambulatory-Medical-Care-Survey-NAMCS-tables.Rmd |  528 +--
 surveytable-0.9.4/surveytable/vignettes/surveytable.Rmd                                                  |  915 ++---
 65 files changed, 5426 insertions(+), 3910 deletions(-)

More information about surveytable at CRAN
Permanent link

Package experDesign updated to version 0.4.0 with previous version 0.3.0 dated 2024-02-19

Title: Design Experiments for Batches
Description: Distributes samples in batches while making batches homogeneous according to their description. Allows for an arbitrary number of variables, both numeric and categorical. For quality control it provides functions to subset a representative sample.
Author: Lluis Revilla Sancho [aut, cre] , Juanjo Lozano [ths] , Azucena Salas Martinez [ths]
Maintainer: Lluis Revilla Sancho <lluis.revilla@gmail.com>

Diff between experDesign versions 0.3.0 dated 2024-02-19 and 0.4.0 dated 2024-05-20

 DESCRIPTION                            |    8 -
 MD5                                    |   42 +++---
 NAMESPACE                              |    1 
 NEWS.md                                |   18 ++
 R/evaluate_category.R                  |    8 -
 R/follow_up.R                          |    2 
 R/indexing.R                           |   47 +------
 R/reporting.R                          |    7 -
 R/spatial.R                            |   68 ++++++----
 R/utils.R                              |   57 ++++++++
 README.md                              |   26 +++
 build/vignette.rds                     |binary
 inst/doc/experdesign.html              |  216 ++++++++++++++++-----------------
 man/check_data.Rd                      |    9 +
 man/distribution.Rd                    |    2 
 man/follow_up.Rd                       |    2 
 man/position_name.Rd                   |only
 tests/testthat/test-consistent_index.R |only
 tests/testthat/test-distribution.R     |    2 
 tests/testthat/test-follow_up.R        |  212 ++++++++++++++++----------------
 tests/testthat/test-indexing.R         |    2 
 tests/testthat/test-inspect.R          |   15 ++
 tests/testthat/test-spatial.R          |   44 ++++++
 23 files changed, 469 insertions(+), 319 deletions(-)

More information about experDesign at CRAN
Permanent link

Package RobinCar updated to version 0.3.0 with previous version 0.2.0 dated 2024-05-02

Title: Robust Estimation and Inference in Covariate-Adaptive Randomization
Description: Performs robust estimation and inference when using covariate adjustment and/or covariate-adaptive randomization in randomized controlled trials. Ting Ye, Jun Shao, Yanyao Yi, Qinyuan Zhao (2023) <doi:10.1080/01621459.2022.2049278>. Ting Ye, Marlena Bannick, Yanyao Yi, Jun Shao (2023) <doi:10.1080/24754269.2023.2205802>. Ting Ye, Jun Shao, Yanyao Yi (2023) <doi:10.1093/biomet/asad045>. Marlena Bannick, Jun Shao, Jingyi Liu, Yu Du, Yanyao Yi, Ting Ye (2024) <doi:10.48550/arXiv.2306.10213>.
Author: Marlena Bannick [cre, aut] , Ting Ye [aut], Yanyao Yi [aut], Faith Bian [aut]
Maintainer: Marlena Bannick <mnorwood@uw.edu>

Diff between RobinCar versions 0.2.0 dated 2024-05-02 and 0.3.0 dated 2024-05-20

 RobinCar-0.2.0/RobinCar/R/adjust-linear.R                     |only
 RobinCar-0.2.0/RobinCar/R/description-linear.R                |only
 RobinCar-0.2.0/RobinCar/R/logic-linear.R                      |only
 RobinCar-0.2.0/RobinCar/man/robincar_glm2.Rd                  |only
 RobinCar-0.2.0/RobinCar/man/robincar_linear2.Rd               |only
 RobinCar-0.2.0/RobinCar/tests/testthat/test-glm-formula.R     |only
 RobinCar-0.2.0/RobinCar/tests/testthat/test_glm2.R            |only
 RobinCar-0.2.0/RobinCar/tests/testthat/test_linear2.R         |only
 RobinCar-0.3.0/RobinCar/DESCRIPTION                           |    6 
 RobinCar-0.3.0/RobinCar/MD5                                   |   51 +--
 RobinCar-0.3.0/RobinCar/NAMESPACE                             |   20 -
 RobinCar-0.3.0/RobinCar/NEWS.md                               |   17 +
 RobinCar-0.3.0/RobinCar/R/Data.R                              |   41 ++-
 RobinCar-0.3.0/RobinCar/R/adjust-glm.R                        |   94 ++++---
 RobinCar-0.3.0/RobinCar/R/logic-glm.R                         |  118 +-------
 RobinCar-0.3.0/RobinCar/R/model.R                             |   61 ----
 RobinCar-0.3.0/RobinCar/R/robincar-SL.R                       |    2 
 RobinCar-0.3.0/RobinCar/R/robincar-calibrate.R                |   41 +--
 RobinCar-0.3.0/RobinCar/R/robincar-covhr.R                    |    2 
 RobinCar-0.3.0/RobinCar/R/robincar-glm.R                      |   66 ----
 RobinCar-0.3.0/RobinCar/R/robincar-linear.R                   |   82 +-----
 RobinCar-0.3.0/RobinCar/R/robincar-tte.R                      |    2 
 RobinCar-0.3.0/RobinCar/R/utils-arg.R                         |   10 
 RobinCar-0.3.0/RobinCar/R/variance-linear.R                   |  112 --------
 RobinCar-0.3.0/RobinCar/README.md                             |   31 ++
 RobinCar-0.3.0/RobinCar/man/robincar_glm.Rd                   |   17 -
 RobinCar-0.3.0/RobinCar/man/robincar_linear.Rd                |   16 -
 RobinCar-0.3.0/RobinCar/tests/testthat/test-contrast.R        |only
 RobinCar-0.3.0/RobinCar/tests/testthat/test-glm-calibration.R |    4 
 RobinCar-0.3.0/RobinCar/tests/testthat/test-glm-legacy.R      |   46 ++-
 RobinCar-0.3.0/RobinCar/tests/testthat/test-glm.R             |  133 ++++------
 31 files changed, 357 insertions(+), 615 deletions(-)

More information about RobinCar at CRAN
Permanent link

Package bWGR updated to version 2.2.9 with previous version 2.2.8 dated 2024-04-27

Title: Bayesian Whole-Genome Regression
Description: Whole-genome regression methods on Bayesian framework fitted via EM or Gibbs sampling, single step (<doi:10.1534/g3.119.400728>), univariate and multivariate (<doi:10.1186/s12711-022-00730-w>), with optional kernel term and sampling techniques (<doi:10.1186/s12859-017-1582-3>).
Author: Alencar Xavier [aut, cre] , William Muir [aut], David Habier [aut], Kyle Kocak [aut], Shizhong Xu [aut], Katy Rainey [aut]
Maintainer: Alencar Xavier <alenxav@gmail.com>

Diff between bWGR versions 2.2.8 dated 2024-04-27 and 2.2.9 dated 2024-05-20

 DESCRIPTION               |    8 
 MD5                       |   21 
 R/RcppExports.R           |   48 -
 R/mix.R                   |   20 
 demo/00Index              |    1 
 demo/multivariates.R      |only
 man/bWGR.Rd               |    4 
 man/mvr.Rd                |   31 -
 man/xtra.Rd               |   26 
 src/Rcpp20230423.cpp      |  208 -------
 src/RcppEigen20230423.cpp | 1218 ++++++++++++++--------------------------------
 src/RcppExports.cpp       |  204 ++-----
 12 files changed, 539 insertions(+), 1250 deletions(-)

More information about bWGR at CRAN
Permanent link

Package cleanNLP updated to version 3.1.0 with previous version 3.0.7 dated 2023-11-16

Title: A Tidy Data Model for Natural Language Processing
Description: Provides a set of fast tools for converting a textual corpus into a set of normalized tables. Users may make use of the 'udpipe' back end with no external dependencies, or a Python back ends with 'spaCy' <https://spacy.io>. Exposed annotation tasks include tokenization, part of speech tagging, named entity recognition, and dependency parsing.
Author: Taylor B. Arnold [aut, cre]
Maintainer: Taylor B. Arnold <tarnold2@richmond.edu>

Diff between cleanNLP versions 3.0.7 dated 2023-11-16 and 3.1.0 dated 2024-05-20

 cleanNLP-3.0.7/cleanNLP/R/backend_corenlp.R              |only
 cleanNLP-3.0.7/cleanNLP/man/cnlp_download_corenlp.Rd     |only
 cleanNLP-3.0.7/cleanNLP/man/cnlp_init_corenlp.Rd         |only
 cleanNLP-3.1.0/cleanNLP/DESCRIPTION                      |   12 +-
 cleanNLP-3.1.0/cleanNLP/MD5                              |   33 +++----
 cleanNLP-3.1.0/cleanNLP/NAMESPACE                        |    2 
 cleanNLP-3.1.0/cleanNLP/R/annotate.R                     |    7 -
 cleanNLP-3.1.0/cleanNLP/R/download.R                     |   27 ------
 cleanNLP-3.1.0/cleanNLP/R/init.R                         |   67 ---------------
 cleanNLP-3.1.0/cleanNLP/R/onLoad.R                       |    1 
 cleanNLP-3.1.0/cleanNLP/R/pkg.R                          |   13 +-
 cleanNLP-3.1.0/cleanNLP/build/vignette.rds               |binary
 cleanNLP-3.1.0/cleanNLP/inst/doc/state-of-union.html     |   12 +-
 cleanNLP-3.1.0/cleanNLP/inst/doc/wikipedia.html          |    4 
 cleanNLP-3.1.0/cleanNLP/man/cleanNLP-package.Rd          |   13 +-
 cleanNLP-3.1.0/cleanNLP/man/cnlp_annotate.Rd             |    4 
 cleanNLP-3.1.0/cleanNLP/man/cnlp_download_spacy.Rd       |    7 -
 cleanNLP-3.1.0/cleanNLP/man/cnlp_init_spacy.Rd           |    4 
 cleanNLP-3.1.0/cleanNLP/tests/testthat/test-annotation.R |    9 --
 19 files changed, 57 insertions(+), 158 deletions(-)

More information about cleanNLP at CRAN
Permanent link

Package waveband updated to version 4.7.3 with previous version 4.7.2 dated 2022-11-11

Title: Computes Credible Intervals for Bayesian Wavelet Shrinkage
Description: Computes Bayesian wavelet shrinkage credible intervals for nonparametric regression. The method uses cumulants to derive Bayesian credible intervals for wavelet regression estimates. The first four cumulants of the posterior distribution of the estimates are expressed in terms of the observed data and integer powers of the mother wavelet functions. These powers are closely approximated by linear combinations of wavelet scaling functions at an appropriate finer scale. Hence, a suitable modification of the discrete wavelet transform allows the posterior cumulants to be found efficiently for any data set. Johnson transformations then yield the credible intervals themselves. Barber, S., Nason, G.P. and Silverman, B.W. (2002) <doi:10.1111/1467-9868.00332>.
Author: Stuart Barber [aut], Guy Nason [cre, ctb]
Maintainer: Guy Nason <g.nason@imperial.ac.uk>

Diff between waveband versions 4.7.2 dated 2022-11-11 and 4.7.3 dated 2024-05-20

 DESCRIPTION  |    8 ++++----
 MD5          |    8 ++++----
 inst/CHANGES |    2 ++
 src/as99.f   |   15 ++++++++++-----
 src/init.c   |    4 ++--
 5 files changed, 22 insertions(+), 15 deletions(-)

More information about waveband at CRAN
Permanent link

Package FIESTA updated to version 3.6.3 with previous version 3.6.2 dated 2024-02-08

Title: Forest Inventory Estimation and Analysis
Description: A research estimation tool for analysts that work with sample-based inventory data from the U.S. Department of Agriculture, Forest Service, Forest Inventory and Analysis (FIA) Program.
Author: Tracey Frescino [aut], Gretchen Moisen [aut], Paul Patterson [aut], Chris Toney [aut], Grayson White [aut, cre] , Joshua Yamamoto [aut]
Maintainer: Grayson White <graysonwhite13@gmail.com>

Diff between FIESTA versions 3.6.2 dated 2024-02-08 and 3.6.3 dated 2024-05-20

 DESCRIPTION                       |   13 
 MD5                               |  181 ++--
 R/DBgetEvalid.R                   |  667 +++++++++------
 R/DBgetPlots.R                    | 1670 +++++++++++++++++++++-----------------
 R/DBgetXY.R                       |  490 +++++------
 R/ISAinternal.R                   |    9 
 R/check.PROPvars.R                |only
 R/check.auxiliary.R               |   99 +-
 R/check.estdata.R                 |  170 ++-
 R/check.popdataCHNG.R             |  150 +--
 R/check.popdataP2VEG.R            |   72 -
 R/check.popdataPLT.R              |   58 -
 R/check.popdataVOL.R              |   12 
 R/check.rowcol.R                  |  918 +++++++++++---------
 R/check.tree.R                    |    5 
 R/check.unitarea.R                |    4 
 R/datBarplot.R                    |  138 +--
 R/datFilter.R                     |    3 
 R/datLUTnm.R                      |  253 ++---
 R/datLineplot.R                   |  128 +-
 R/datSumTree.R                    |   45 -
 R/datSumTreeDom.R                 |   71 +
 R/modGBarea.R                     |   14 
 R/modGBchng.R                     |   15 
 R/modGBp2veg.R                    |  223 +++--
 R/modGBpop.R                      |  195 ++--
 R/modGBratio.R                    |    5 
 R/modGBtree.R                     |    3 
 R/modMAarea.R                     |    8 
 R/modMAtree.R                     |   81 -
 R/popFilters.R                    |   29 
 R/spClipPoint.R                   |   34 
 R/spClipPoly.R                    |   71 -
 R/spClipRast.R                    |   50 -
 R/spExportSpatial.R               |   62 -
 R/spGetAuxiliary.R                |  397 ++++-----
 R/spGetPlots.R                    |  147 +--
 R/spGetSAdoms.R                   |    1 
 R/spGetStrata.R                   |  171 ++-
 R/spGetXY.R                       |    8 
 R/spPoly2Rast.R                   |   31 
 R/spReprojectRaster.R             |    8 
 R/spUnionPoly.R                   |   21 
 R/spZonalRast.R                   |   81 +
 build/vignette.rds                |binary
 inst/doc/FIESTA_tutorial_GB.R     |    1 
 inst/doc/FIESTA_tutorial_GB.Rmd   |    1 
 inst/doc/FIESTA_tutorial_GB.html  |  352 ++++----
 inst/doc/FIESTA_tutorial_MA.html  |   31 
 inst/doc/FIESTA_tutorial_PB.html  |   33 
 inst/doc/FIESTA_tutorial_SA.html  |   98 +-
 inst/doc/FIESTA_tutorial_dat.html |  336 +++++--
 inst/doc/FIESTA_tutorial_sp.html  |    2 
 man/DBgetEvalid.Rd                |   10 
 man/DBgetPlots.Rd                 |    8 
 man/datSumTree.Rd                 |   15 
 man/modGBchng.Rd                  |    3 
 man/modGBpop.Rd                   |    4 
 man/popFilters.Rd                 |   27 
 man/spClipPoint.Rd                |    9 
 man/spClipPoly.Rd                 |    9 
 man/spClipRast.Rd                 |    7 
 man/spGetAuxiliary.Rd             |    4 
 man/spPoly2Rast.Rd                |   12 
 man/spUnionPoly.Rd                |    5 
 man/spZonalRast.Rd                |   19 
 tests                             |only
 vignettes/FIESTA_tutorial_GB.Rmd  |    1 
 68 files changed, 4464 insertions(+), 3334 deletions(-)

More information about FIESTA at CRAN
Permanent link

Package censReg updated to version 0.5-38 with previous version 0.5-36 dated 2022-08-07

Title: Censored Regression (Tobit) Models
Description: Maximum Likelihood estimation of censored regression (Tobit) models with cross-sectional and panel data.
Author: Arne Henningsen <arne.henningsen@gmail.com>
Maintainer: Arne Henningsen <arne.henningsen@gmail.com>

Diff between censReg versions 0.5-36 dated 2022-08-07 and 0.5-38 dated 2024-05-20

 DESCRIPTION                      |    8 ++++----
 MD5                              |   12 ++++++------
 build/vignette.rds               |binary
 inst/NEWS.Rd                     |    6 ++++++
 inst/doc/censReg.pdf             |binary
 tests/censRegPanelTest.R         |    3 +++
 tests/censRegPanelTest.Rout.save |   10 ++++++----
 7 files changed, 25 insertions(+), 14 deletions(-)

More information about censReg at CRAN
Permanent link

Package geonode4R updated to version 0.1-1 with previous version 0.1 dated 2024-04-18

Title: Interface to 'GeoNode' REST API
Description: Provides an interface to the 'GeoNode' API, allowing to upload and publish metadata and data in 'GeoNode'. For more information about the 'GeoNode' API, see <https://geonode.org/>.
Author: Emmanuel Blondel [aut, cre]
Maintainer: Emmanuel Blondel <emmanuel.blondel1@gmail.com>

Diff between geonode4R versions 0.1 dated 2024-04-18 and 0.1-1 dated 2024-05-20

 DESCRIPTION        |    8 ++++----
 MD5                |    7 ++++---
 NEWS.md            |only
 R/GeoNodeManager.R |    2 +-
 README.md          |    4 +++-
 5 files changed, 12 insertions(+), 9 deletions(-)

More information about geonode4R at CRAN
Permanent link

Package fuj updated to version 0.2.1 with previous version 0.2.0 dated 2024-05-07

Title: Functions and Utilities for Jordan
Description: Provides core functions and utilities for packages and other code developed by Jordan Mark Barbone.
Author: Jordan Mark Barbone [aut, cph, cre]
Maintainer: Jordan Mark Barbone <jmbarbone@gmail.com>

Diff between fuj versions 0.2.0 dated 2024-05-07 and 0.2.1 dated 2024-05-20

 DESCRIPTION                |    6 +++---
 MD5                        |    8 ++++----
 NEWS.md                    |    6 ++++++
 R/list.R                   |    8 +++++++-
 tests/testthat/test-list.R |    4 ++++
 5 files changed, 24 insertions(+), 8 deletions(-)

More information about fuj at CRAN
Permanent link

Package cmahalanobis updated to version 0.3.0 with previous version 0.2.0 dated 2024-05-17

Title: Calculate Distance Measures for a Given List of Data Frames with Factors
Description: It provides functions that calculate Mahalanobis distance, Euclidean distance, Manhattan distance and Chebyshev distance between each pair of species in a list of data frames. These metrics are fundamental in various fields, such as cluster analysis, classification, and other applications of machine learning and data mining, where assessing similarity or dissimilarity between data is crucial. The package is designed to be flexible and easily integrated into data analysis workflows, providing reliable tools for evaluating distances in multidimensional contexts.
Author: Flavio Gioia
Maintainer: Flavio Gioia <flaviogioia.fg@gmail.com>

Diff between cmahalanobis versions 0.2.0 dated 2024-05-17 and 0.3.0 dated 2024-05-20

 cmahalanobis-0.2.0/cmahalanobis/inst/doc/my-vignette.R        |only
 cmahalanobis-0.2.0/cmahalanobis/inst/doc/my-vignette.Rmd      |only
 cmahalanobis-0.2.0/cmahalanobis/inst/doc/my-vignette.html     |only
 cmahalanobis-0.2.0/cmahalanobis/inst/vignette1.Rmd            |only
 cmahalanobis-0.2.0/cmahalanobis/vignettes/my-vignette.Rmd     |only
 cmahalanobis-0.3.0/cmahalanobis/DESCRIPTION                   |   12 
 cmahalanobis-0.3.0/cmahalanobis/MD5                           |   24 
 cmahalanobis-0.3.0/cmahalanobis/NAMESPACE                     |    5 
 cmahalanobis-0.3.0/cmahalanobis/R/cmahalanobis.R              |  358 +++++++++-
 cmahalanobis-0.3.0/cmahalanobis/build/vignette.rds            |binary
 cmahalanobis-0.3.0/cmahalanobis/inst/doc/my-vignette3.R       |only
 cmahalanobis-0.3.0/cmahalanobis/inst/doc/my-vignette3.Rmd     |only
 cmahalanobis-0.3.0/cmahalanobis/inst/doc/my-vignette3.html    |only
 cmahalanobis-0.3.0/cmahalanobis/man/cchebyshev.Rd             |only
 cmahalanobis-0.3.0/cmahalanobis/man/ceuclide.Rd               |only
 cmahalanobis-0.3.0/cmahalanobis/man/cmahalanobis.Rd           |  136 ++-
 cmahalanobis-0.3.0/cmahalanobis/man/cmanhattan.Rd             |only
 cmahalanobis-0.3.0/cmahalanobis/tests/testthat/cmahalanobis.R |  355 +++++++++
 cmahalanobis-0.3.0/cmahalanobis/vignettes/my-vignette3.Rmd    |only
 19 files changed, 789 insertions(+), 101 deletions(-)

More information about cmahalanobis at CRAN
Permanent link

Package shiny.react updated to version 0.4.0 with previous version 0.3.0 dated 2022-12-25

Title: Tools for Using React in Shiny
Description: A toolbox for defining React component wrappers which can be used seamlessly in Shiny apps.
Author: Jakub Sobolewski [aut, cre], Kamil Zyla [aut], Marek Rogala [aut], Appsilon Sp. z o.o. [cph]
Maintainer: Jakub Sobolewski <opensource+jakub.sobolewski@appsilon.com>

Diff between shiny.react versions 0.3.0 dated 2022-12-25 and 0.4.0 dated 2024-05-20

 shiny.react-0.3.0/shiny.react/tests/testthat/test-all.R                  |only
 shiny.react-0.4.0/shiny.react/DESCRIPTION                                |   25 
 shiny.react-0.4.0/shiny.react/MD5                                        |   44 
 shiny.react-0.4.0/shiny.react/NAMESPACE                                  |    3 
 shiny.react-0.4.0/shiny.react/NEWS.md                                    |    6 
 shiny.react-0.4.0/shiny.react/R/dependencies.R                           |   32 
 shiny.react-0.4.0/shiny.react/R/react.R                                  |   88 
 shiny.react-0.4.0/shiny.react/R/reactData.R                              |    9 
 shiny.react-0.4.0/shiny.react/R/utilities.R                              |   10 
 shiny.react-0.4.0/shiny.react/README.md                                  |    8 
 shiny.react-0.4.0/shiny.react/build/vignette.rds                         |binary
 shiny.react-0.4.0/shiny.react/inst/doc/shiny-react.Rmd                   |    2 
 shiny.react-0.4.0/shiny.react/inst/doc/shiny-react.html                  |  769 
 shiny.react-0.4.0/shiny.react/inst/www/react/react-dom.development.js    |18870 +++++-----
 shiny.react-0.4.0/shiny.react/inst/www/react/react-dom.production.min.js |  490 
 shiny.react-0.4.0/shiny.react/inst/www/react/react.development.js        | 1640 
 shiny.react-0.4.0/shiny.react/inst/www/react/react.production.min.js     |   46 
 shiny.react-0.4.0/shiny.react/inst/www/shiny.react/shiny-react.js        | 3379 +
 shiny.react-0.4.0/shiny.react/inst/www/shiny.react/shiny-react.js.map    |    2 
 shiny.react-0.4.0/shiny.react/man/figures/shiny-react.png                |binary
 shiny.react-0.4.0/shiny.react/man/setInput.Rd                            |   56 
 shiny.react-0.4.0/shiny.react/tests/testthat/setup-disable-crashpad.R    |only
 shiny.react-0.4.0/shiny.react/tests/testthat/test-rendering.R            |only
 shiny.react-0.4.0/shiny.react/tests/testthat/test-setInput.R             |only
 shiny.react-0.4.0/shiny.react/vignettes/shiny-react.Rmd                  |    2 
 25 files changed, 16241 insertions(+), 9240 deletions(-)

More information about shiny.react at CRAN
Permanent link

Package rspm updated to version 0.5.3 with previous version 0.5.2 dated 2024-05-04

Title: 'RStudio' Package Manager
Description: Enables binary package installations on Linux distributions. Provides access to 'RStudio' public repositories at <https://packagemanager.posit.co>, and transparent management of system requirements without administrative privileges. Currently supported distributions are 'CentOS' / 'RHEL' 7-9, and several 'RHEL' derivatives ('Rocky Linux', 'AlmaLinux', 'Oracle Linux', and 'Amazon Linux' 2), 'openSUSE' / 'SLES' 15.4-5, 'Debian' 11-12, and 'Ubuntu' LTS 20-22.
Author: Inaki Ucar [aut, cph, cre] , R Core Team [aut, cph]
Maintainer: Inaki Ucar <iucar@fedoraproject.org>

Diff between rspm versions 0.5.2 dated 2024-05-04 and 0.5.3 dated 2024-05-20

 DESCRIPTION                      |    6 +++---
 MD5                              |    8 ++++----
 NEWS.md                          |    4 ++++
 R/os.R                           |    2 ++
 inst/tinytest/test_integration.R |    1 -
 5 files changed, 13 insertions(+), 8 deletions(-)

More information about rspm at CRAN
Permanent link

Package RPDTest updated to version 0.0.2 with previous version 0.0.1 dated 2023-09-27

Title: A New Type of Test Statistic and Method for Multinomial Goodness-of-Fit Test
Description: Performs multinomial goodness-of-fit test on multinomially distributed data using the Randomized phi-divergence test statistics. Details of this kind of statistics can be found at Nikita Puchkin, Vladimir Ulyanov (2023) <doi:10.1214/22-AIHP1299>.
Author: Renkang Liu [aut, cre]
Maintainer: Renkang Liu <eG0im@outlook.com>

Diff between RPDTest versions 0.0.1 dated 2023-09-27 and 0.0.2 dated 2024-05-20

 DESCRIPTION                |    6 -
 MD5                        |   15 ++-
 NAMESPACE                  |    1 
 NEWS.md                    |    8 ++
 R/print.randomPhiDivTest.r |only
 R/rpdtest.R                |  179 ++++++++++++++++++++++-----------------------
 man/pVals.Rd               |   16 ++--
 man/rpdStat.Rd             |    5 +
 man/rpdTest.Rd             |   38 ++++++---
 9 files changed, 145 insertions(+), 123 deletions(-)

More information about RPDTest at CRAN
Permanent link

Package mefa4 updated to version 0.3-11 with previous version 0.3-9 dated 2022-09-12

Title: Multivariate Data Handling with S4 Classes and Sparse Matrices
Description: An S4 update of the 'mefa' package using sparse matrices for enhanced efficiency. Sparse array-like objects are supported via lists of sparse matrices.
Author: Peter Solymos
Maintainer: Peter Solymos <psolymos@gmail.com>

Diff between mefa4 versions 0.3-9 dated 2022-09-12 and 0.3-11 dated 2024-05-20

 DESCRIPTION       |   10 +++++-----
 MD5               |    9 +++++----
 build/partial.rdb |binary
 inst/CITATION     |    9 ++++-----
 inst/WORDLIST     |only
 man/r2rmd.Rd      |    2 +-
 6 files changed, 15 insertions(+), 15 deletions(-)

More information about mefa4 at CRAN
Permanent link

Package mefa updated to version 3.2-9 with previous version 3.2-8 dated 2021-10-07

Title: Multivariate Data Handling in Ecology and Biogeography
Description: A framework package aimed to provide standardized computational environment for specialist work via object classes to represent the data coded by samples, taxa and segments (i.e. subpopulations, repeated measures). It supports easy processing of the data along with cross tabulation and relational data tables for samples and taxa. An object of class `mefa' is a project specific compendium of the data and can be easily used in further analyses. Methods are provided for extraction, aggregation, conversion, plotting, summary and reporting of `mefa' objects. Reports can be generated in plain text or LaTeX format. Vignette contains worked examples.
Author: Peter Solymos
Maintainer: Peter Solymos <psolymos@gmail.com>

Diff between mefa versions 3.2-8 dated 2021-10-07 and 3.2-9 dated 2024-05-20

 DESCRIPTION       |   10 +++++-----
 MD5               |   12 ++++++------
 build/partial.rdb |binary
 demo/mefa.R       |    2 +-
 inst/CITATION     |    8 ++++----
 inst/ChangeLog    |    5 +++++
 inst/tmp/mefa.Rnw |    4 ++--
 7 files changed, 23 insertions(+), 18 deletions(-)

More information about mefa at CRAN
Permanent link

Package ledger updated to version 2.0.11 with previous version 2.0.9 dated 2021-11-12

Title: Utilities for Importing Data from Plain Text Accounting Files
Description: Utilities for querying plain text accounting files from 'Ledger', 'HLedger', and 'Beancount'.
Author: Trevor L. Davis [aut, cre] , Jenya Sovetkin [ctb], Chris Lloyd [ctb]
Maintainer: Trevor L. Davis <trevor.l.davis@gmail.com>

Diff between ledger versions 2.0.9 dated 2021-11-12 and 2.0.11 dated 2024-05-20

 DESCRIPTION                              |   18 -
 LICENSE                                  |    2 
 MD5                                      |   16 -
 NEWS.md                                  |   37 ++-
 R/register.r                             |   77 ++++---
 README.md                                |  325 ++++++++++++++++---------------
 inst/extdata/example.ledger              |    2 
 man/figures/README-income_chart-1.png    |binary
 man/figures/README-net_worth_chart-1.png |binary
 9 files changed, 255 insertions(+), 222 deletions(-)

More information about ledger at CRAN
Permanent link

Package intrval updated to version 0.1-3 with previous version 0.1-2 dated 2020-08-12

Title: Relational Operators for Intervals
Description: Evaluating if values of vectors are within different open/closed intervals (`x %[]% c(a, b)`), or if two closed intervals overlap (`c(a1, b1) %[]o[]% c(a2, b2)`). Operators for negation and directional relations also implemented.
Author: Peter Solymos
Maintainer: Peter Solymos <psolymos@gmail.com>

Diff between intrval versions 0.1-2 dated 2020-08-12 and 0.1-3 dated 2024-05-20

 DESCRIPTION       |   11 +++++------
 MD5               |    4 ++--
 build/partial.rdb |binary
 3 files changed, 7 insertions(+), 8 deletions(-)

More information about intrval at CRAN
Permanent link

Package omock updated to version 0.2.0 with previous version 0.1.0 dated 2024-03-08

Title: Creation of Mock Observational Medical Outcomes Partnership Common Data Model
Description: Creates mock data for testing and package development for the Observational Medical Outcomes Partnership common data model. The package offers functions crafted with pipeline-friendly implementation, enabling users to effortlessly include only the necessary tables for their testing needs.
Author: Mike Du [aut, cre] , Marti Catala [aut] , Edward Burn [aut] , Nuria Mercade-Besora [aut] , Xihang Chen [aut]
Maintainer: Mike Du <mike.du@ndorms.ox.ac.uk>

Diff between omock versions 0.1.0 dated 2024-03-08 and 0.2.0 dated 2024-05-20

 omock-0.1.0/omock/man/mockCdmFromTable.Rd                              |only
 omock-0.2.0/omock/DESCRIPTION                                          |   12 
 omock-0.2.0/omock/MD5                                                  |   75 +
 omock-0.2.0/omock/NAMESPACE                                            |    9 
 omock-0.2.0/omock/NEWS.md                                              |    8 
 omock-0.2.0/omock/R/checks.R                                           |   74 +
 omock-0.2.0/omock/R/mockCdmFromTables.R                                |  454 +++++-----
 omock-0.2.0/omock/R/mockCdmReference.R                                 |    9 
 omock-0.2.0/omock/R/mockCohort.R                                       |   18 
 omock-0.2.0/omock/R/mockConcept.R                                      |only
 omock-0.2.0/omock/R/mockConditionOccurrence.R                          |only
 omock-0.2.0/omock/R/mockDeath.R                                        |only
 omock-0.2.0/omock/R/mockDrugExposure.R                                 |only
 omock-0.2.0/omock/R/mockMeasurement.R                                  |only
 omock-0.2.0/omock/R/mockObservation.R                                  |only
 omock-0.2.0/omock/R/mockPerson.R                                       |   17 
 omock-0.2.0/omock/R/mockVisitOccurrence.R                              |only
 omock-0.2.0/omock/R/mockVocabulary.R                                   |only
 omock-0.2.0/omock/R/sysdata.rda                                        |only
 omock-0.2.0/omock/README.md                                            |    6 
 omock-0.2.0/omock/inst/doc/a01_Creating_synthetic_clinical_tables.html |  410 ++++++---
 omock-0.2.0/omock/inst/doc/a02_Creating_synthetic_cohorts.R            |    2 
 omock-0.2.0/omock/inst/doc/a02_Creating_synthetic_cohorts.Rmd          |    2 
 omock-0.2.0/omock/inst/doc/a02_Creating_synthetic_cohorts.html         |  372 ++++++--
 omock-0.2.0/omock/inst/doc/a03_Creating_a_synthetic_vocabulary.html    |  313 +++++-
 omock-0.2.0/omock/inst/doc/a04_Building_a_bespoke_mock_cdm.R           |    2 
 omock-0.2.0/omock/inst/doc/a04_Building_a_bespoke_mock_cdm.Rmd         |    4 
 omock-0.2.0/omock/inst/doc/a04_Building_a_bespoke_mock_cdm.html        |  362 ++++++-
 omock-0.2.0/omock/man/mockCdmFromTables.Rd                             |only
 omock-0.2.0/omock/man/mockCdmReference.Rd                              |    7 
 omock-0.2.0/omock/man/mockCohort.Rd                                    |   10 
 omock-0.2.0/omock/man/mockConcepts.Rd                                  |only
 omock-0.2.0/omock/man/mockConditionOccurrence.Rd                       |only
 omock-0.2.0/omock/man/mockDeath.Rd                                     |only
 omock-0.2.0/omock/man/mockDrugExposure.Rd                              |only
 omock-0.2.0/omock/man/mockMeasurement.Rd                               |only
 omock-0.2.0/omock/man/mockObservation.Rd                               |only
 omock-0.2.0/omock/man/mockPerson.Rd                                    |   11 
 omock-0.2.0/omock/man/mockVocabularyTables.Rd                          |only
 omock-0.2.0/omock/man/omock-package.Rd                                 |    2 
 omock-0.2.0/omock/tests/testthat/test-mockCdmFromTables.R              |   14 
 omock-0.2.0/omock/tests/testthat/test-mockCohort.R                     |    2 
 omock-0.2.0/omock/tests/testthat/test-mockConcepts.R                   |only
 omock-0.2.0/omock/tests/testthat/test-mockCondtitionOccurrence.R       |only
 omock-0.2.0/omock/tests/testthat/test-mockDeath.R                      |only
 omock-0.2.0/omock/tests/testthat/test-mockDrugExposure.R               |only
 omock-0.2.0/omock/tests/testthat/test-mockMeasurement.R                |only
 omock-0.2.0/omock/tests/testthat/test-mockObservation.R                |only
 omock-0.2.0/omock/tests/testthat/test-mockVocabularyTables.R           |only
 omock-0.2.0/omock/vignettes/a02_Creating_synthetic_cohorts.Rmd         |    2 
 omock-0.2.0/omock/vignettes/a04_Building_a_bespoke_mock_cdm.Rmd        |    4 
 51 files changed, 1586 insertions(+), 615 deletions(-)

More information about omock at CRAN
Permanent link

Package insurancerating updated to version 0.7.4 with previous version 0.7.3 dated 2024-05-09

Title: Analytic Insurance Rating Techniques
Description: Methods for insurance rating. It helps actuaries to implement GLMs within all relevant steps needed to construct a risk premium from raw data. It provides a data driven strategy for the construction of insurance tariff classes. This strategy is based on the work by Antonio and Valdez (2012) <doi:10.1007/s10182-011-0152-7>. It also provides recipes on how to easily perform one-way, or univariate, analyses on an insurance portfolio. In addition it adds functionality to include reference categories in the levels of the coefficients in the output of a generalized linear regression analysis.
Author: Martin Haringa [aut, cre]
Maintainer: Martin Haringa <mtharinga@gmail.com>

Diff between insurancerating versions 0.7.3 dated 2024-05-09 and 0.7.4 dated 2024-05-20

 DESCRIPTION                                |   10 +-
 MD5                                        |   82 ++++++++++-----------
 NAMESPACE                                  |    3 
 NEWS.md                                    |    5 +
 R/deprecated.R                             |    2 
 R/gam_fit.R                                |    4 -
 R/model_get_data.R                         |   32 ++++----
 R/model_performance_bootstrap_rmse.R       |    3 
 R/model_performance_residuals.R            |    2 
 R/model_rating_factors.R                   |   36 +++++----
 R/model_refinement.R                       |   34 ++++----
 R/univariate.R                             |  113 ++++++++++++-----------------
 R/utils.R                                  |    8 --
 R/zzz.R                                    |    2 
 man/autoplot.fitgam.Rd                     |    4 -
 man/autoplot.restricted.Rd                 |    4 -
 man/autoplot.univariate.Rd                 |    3 
 man/biggest_reference.Rd                   |    4 -
 man/check_residuals.Rd                     |    2 
 man/construct_model_points.Rd              |   32 ++++----
 man/figures/bootstraprmse-1.png            |binary
 man/figures/example10-1.png                |binary
 man/figures/example11-1.png                |binary
 man/figures/example12-1.png                |binary
 man/figures/example14-1.png                |binary
 man/figures/example15-1.png                |binary
 man/figures/example18a-1.png               |binary
 man/figures/example19-1.png                |binary
 man/figures/example23-1.png                |binary
 man/figures/example3a1-1.png               |binary
 man/figures/example3b-1.png                |binary
 man/figures/example3c-1.png                |binary
 man/figures/example6-1.png                 |binary
 man/figures/example7-1.png                 |binary
 man/figures/example8-1.png                 |binary
 man/figures/example9-1.png                 |binary
 man/figures/unnamed-chunk-3-1.png          |binary
 man/rating_factors.Rd                      |    2 
 man/reexports.Rd                           |    3 
 man/restrict_coef.Rd                       |   10 +-
 man/smooth_coef.Rd                         |   20 ++---
 tests/testthat/test_model_rating_factors.R |   39 +++++++++-
 42 files changed, 246 insertions(+), 213 deletions(-)

More information about insurancerating at CRAN
Permanent link

Package SMMT updated to version 1.2.0 with previous version 1.1.0 dated 2022-04-03

Title: The Swiss Municipal Data Merger Tool Maps Municipalities Over Time
Description: In Switzerland, the landscape of municipalities is changing rapidly mainly due to mergers. The Swiss Municipal Data Merger Tool automatically detects these mutations and maps municipalities over time, i.e. municipalities of an old state to municipalities of a new state. This functionality is helpful when working with datasets that are based on different spatial references. The package's idea and use case is discussed in the following article: <doi:10.1111/spsr.12487>.
Author: Valentin Knechtl [aut, cre]
Maintainer: Valentin Knechtl <valentinknechtl@gmail.com>

Diff between SMMT versions 1.1.0 dated 2022-04-03 and 1.2.0 dated 2024-05-20

 DESCRIPTION                                            |   10 -
 MD5                                                    |   38 ++-
 R/download_municipality_inventory.R                    |   14 +
 R/filter_date.R                                        |    2 
 R/import_CH_municipality_inventory.R                   |    4 
 R/municipality_counter.R                               |   19 +
 R/smmt-package.R                                       |    5 
 build/vignette.rds                                     |binary
 inst/doc/is_the_bfs_nr_unique.R                        |only
 inst/doc/is_the_bfs_nr_unique.Rmd                      |only
 inst/doc/is_the_bfs_nr_unique.html                     |only
 inst/doc/manual.R                                      |    6 
 inst/doc/manual.Rmd                                    |    2 
 inst/doc/manual.html                                   |  154 ++++++++--------
 inst/doc/mutation_count.html                           |  160 ++++++++--------
 inst/doc/use_the_mutations_for_stats.R                 |    4 
 inst/doc/use_the_mutations_for_stats.html              |  162 ++++++++---------
 man/municipality_counter.Rd                            |   18 +
 man/smmt.Rd                                            |   15 +
 tests/testthat/test-filter_date.R                      |only
 tests/testthat/test-import_CH_municipality_inventory.R |only
 vignettes/is_the_bfs_nr_unique.Rmd                     |only
 vignettes/manual.Rmd                                   |    2 
 23 files changed, 347 insertions(+), 268 deletions(-)

More information about SMMT at CRAN
Permanent link

Package quantregGrowth updated to version 1.7-1 with previous version 1.7-0 dated 2023-07-06

Title: Non-Crossing Additive Regression Quantiles and Non-Parametric Growth Charts
Description: Fits non-crossing regression quantiles as a function of linear covariates and multiple smooth terms, including varying coefficients, via B-splines with L1-norm difference penalties. Random intercepts and variable selection are allowed via the lasso penalties. The smoothing parameters are estimated as part of the model fitting, see Muggeo and others (2021) <doi:10.1177/1471082X20929802>. Monotonicity and concavity constraints on the fitted curves are allowed, see Muggeo and others (2013) <doi:10.1007/s10651-012-0232-1>, and also <doi:10.13140/RG.2.2.12924.85122> or <doi:10.13140/RG.2.2.29306.21445> some code examples.
Author: Vito M. R. Muggeo [aut, cre]
Maintainer: Vito M. R. Muggeo <vito.muggeo@unipa.it>

Diff between quantregGrowth versions 1.7-0 dated 2023-07-06 and 1.7-1 dated 2024-05-20

 DESCRIPTION                   |    8 ++--
 MD5                           |   30 ++++++++---------
 NAMESPACE                     |    2 -
 NEWS                          |   53 +++++++++++++++++++++++++++++--
 R/gcrq.r                      |    7 ++--
 R/ncross.rq.fitXBsparse.r     |   10 ++---
 R/plot.gcrq.R                 |   71 ++++++++++++++++++++++++++++--------------
 build/vignette.rds            |binary
 inst/doc/quantregGrowth.R     |   44 ++++++++++++++++++--------
 inst/doc/quantregGrowth.Rmd   |   60 ++++++++++++++++++++++++++---------
 inst/doc/quantregGrowth.html  |   60 ++++++++++++++++++++++++-----------
 man/gcrq.Rd                   |   48 +++++++++++++---------------
 man/plot.gcrq.Rd              |    8 ++--
 man/ps.Rd                     |    5 +-
 man/quantregGrowth-package.Rd |    4 +-
 vignettes/quantregGrowth.Rmd  |   60 ++++++++++++++++++++++++++---------
 16 files changed, 319 insertions(+), 151 deletions(-)

More information about quantregGrowth at CRAN
Permanent link

Package bootUR updated to version 1.0.4 with previous version 1.0.3 dated 2024-01-26

Title: Bootstrap Unit Root Tests
Description: Set of functions to perform various bootstrap unit root tests for both individual time series (including augmented Dickey-Fuller test and union tests), multiple time series and panel data; see Smeekes and Wilms (2023) <doi:10.18637/jss.v106.i12>, Palm, Smeekes and Urbain (2008) <doi:10.1111/j.1467-9892.2007.00565.x>, Palm, Smeekes and Urbain (2011) <doi:10.1016/j.jeconom.2010.11.010>, Moon and Perron (2012) <doi:10.1016/j.jeconom.2012.01.008>, Smeekes and Taylor (2012) <doi:10.1017/S0266466611000387> and Smeekes (2015) <doi:10.1111/jtsa.12110> for key references.
Author: Stephan Smeekes [cre, aut] , Ines Wilms [aut]
Maintainer: Stephan Smeekes <s.smeekes@maastrichtuniversity.nl>

Diff between bootUR versions 1.0.3 dated 2024-01-26 and 1.0.4 dated 2024-05-20

 bootUR-1.0.3/bootUR/inst/doc/bootUR-intro.R    |only
 bootUR-1.0.3/bootUR/inst/doc/bootUR-intro.Rmd  |only
 bootUR-1.0.3/bootUR/inst/doc/bootUR-intro.html |only
 bootUR-1.0.3/bootUR/vignettes/bootUR-intro.Rmd |only
 bootUR-1.0.4/bootUR/DESCRIPTION                |   11 ++++++-----
 bootUR-1.0.4/bootUR/MD5                        |   21 +++++++++++----------
 bootUR-1.0.4/bootUR/NEWS.md                    |    7 +++++++
 bootUR-1.0.4/bootUR/README.md                  |    5 +++--
 bootUR-1.0.4/bootUR/build/vignette.rds         |binary
 bootUR-1.0.4/bootUR/inst/doc/bootUR.R          |only
 bootUR-1.0.4/bootUR/inst/doc/bootUR.Rmd        |only
 bootUR-1.0.4/bootUR/inst/doc/bootUR.html       |only
 bootUR-1.0.4/bootUR/man/figures                |only
 bootUR-1.0.4/bootUR/src/Makevars               |    1 +
 bootUR-1.0.4/bootUR/src/Makevars.win           |    1 +
 bootUR-1.0.4/bootUR/vignettes/bootUR.Rmd       |only
 16 files changed, 29 insertions(+), 17 deletions(-)

More information about bootUR at CRAN
Permanent link

Package minqa updated to version 1.2.7 with previous version 1.2.6 dated 2023-09-11

Title: Derivative-Free Optimization Algorithms by Quadratic Approximation
Description: Derivative-free optimization by quadratic approximation based on an interface to Fortran implementations by M. J. D. Powell.
Author: Douglas Bates, Katharine M. Mullen, John C. Nash, Ravi Varadhan
Maintainer: Katharine M. Mullen <katharine.mullen@stat.ucla.edu>

Diff between minqa versions 1.2.6 dated 2023-09-11 and 1.2.7 dated 2024-05-20

 ChangeLog          |    3 
 DESCRIPTION        |    6 
 MD5                |   34 +-
 src/altmov.f       |  271 ++++++++++++-----------
 src/bigden.f       |  381 +++++++++++++++++---------------
 src/biglag.f       |  155 +++++++------
 src/bobyqa.f       |   74 +++---
 src/bobyqb.f       |  617 +++++++++++++++++++++++++++++------------------------
 src/lagmax.f       |  151 +++++++-----
 src/newuob.f       |  467 ++++++++++++++++++++++------------------
 src/prelim.f       |   40 +--
 src/rescue.f       |  474 +++++++++++++++++++++-------------------
 src/trsapp.f       |  136 ++++++-----
 src/trsbox.f       |  277 ++++++++++++-----------
 src/trstep.f       |  222 ++++++++++---------
 src/uobyqb.f       |  277 +++++++++++++----------
 src/update.f       |   83 +++----
 src/updatebobyqa.f |   63 ++---
 18 files changed, 2035 insertions(+), 1696 deletions(-)

More information about minqa at CRAN
Permanent link

Sun, 19 May 2024

Package spNetwork updated to version 0.4.4 with previous version 0.4.3.8 dated 2023-08-24

Title: Spatial Analysis on Network
Description: Perform spatial analysis on network. Implement several methods for spatial analysis on network: Network Kernel Density estimation, building of spatial matrices based on network distance ('listw' objects from 'spdep' package), K functions estimation for point pattern analysis on network, k nearest neighbours on network, reachable area calculation, and graph generation References: Okabe et al (2019) <doi:10.1080/13658810802475491>; Okabe et al (2012, ISBN:978-0470770818);Baddeley et al (2015, ISBN:9781482210200).
Author: Jeremy Gelb [aut, cre] , Philippe Apparicio [ctb]
Maintainer: Jeremy Gelb <jeremy.gelb@ucs.inrs.ca>

Diff between spNetwork versions 0.4.3.8 dated 2023-08-24 and 0.4.4 dated 2024-05-19

 spNetwork-0.4.3.8/spNetwork/man/bws_tnkde_cv_likelihood_calc.Rd                  |only
 spNetwork-0.4.3.8/spNetwork/man/bws_tnkde_cv_likelihood_calc.mc.Rd               |only
 spNetwork-0.4.3.8/spNetwork/man/corrfactor_simple.Rd                             |only
 spNetwork-0.4.3.8/spNetwork/man/spatial_index-cash-new.Rd                        |only
 spNetwork-0.4.3.8/spNetwork/man/spatial_index-cash-tree_request.Rd               |only
 spNetwork-0.4.4/spNetwork/DESCRIPTION                                            |   11 
 spNetwork-0.4.4/spNetwork/MD5                                                    |  271 +-
 spNetwork-0.4.4/spNetwork/NAMESPACE                                              |   12 
 spNetwork-0.4.4/spNetwork/NEWS.md                                                |   38 
 spNetwork-0.4.4/spNetwork/R/RcppExports.R                                        |  156 +
 spNetwork-0.4.4/spNetwork/R/adaptive_simultaneous_tnkde_bw.R                     |  244 +-
 spNetwork-0.4.4/spNetwork/R/bandwidth_selection_cv_sf.R                          |  160 +
 spNetwork-0.4.4/spNetwork/R/bandwidth_selection_cv_tnkde_sf.R                    |  636 ++++--
 spNetwork-0.4.4/spNetwork/R/bandwidth_selection_cvl_sf.R                         |  129 -
 spNetwork-0.4.4/spNetwork/R/border_correction_sf.R                               |  167 -
 spNetwork-0.4.4/spNetwork/R/data_doc.R                                           |   12 
 spNetwork-0.4.4/spNetwork/R/export_cpp_classes.R                                 |   21 
 spNetwork-0.4.4/spNetwork/R/geometrical_functions_sf.R                           |  127 -
 spNetwork-0.4.4/spNetwork/R/isochrones_sf.R                                      |   44 
 spNetwork-0.4.4/spNetwork/R/k_functions_nettime_sf.R                             |   48 
 spNetwork-0.4.4/spNetwork/R/k_functions_sf.R                                     |   29 
 spNetwork-0.4.4/spNetwork/R/knn_sf.R                                             |   27 
 spNetwork-0.4.4/spNetwork/R/nkde_execution_functions_sf.R                        |  342 ++-
 spNetwork-0.4.4/spNetwork/R/spatial_indexing_sf.R                                |   10 
 spNetwork-0.4.4/spNetwork/R/temporal_nkde_sf.R                                   |   22 
 spNetwork-0.4.4/spNetwork/README.md                                              |   11 
 spNetwork-0.4.4/spNetwork/build/partial.rdb                                      |binary
 spNetwork-0.4.4/spNetwork/build/vignette.rds                                     |binary
 spNetwork-0.4.4/spNetwork/data/bike_accidents.rda                                |binary
 spNetwork-0.4.4/spNetwork/data/main_network_mtl.rda                              |binary
 spNetwork-0.4.4/spNetwork/data/mtl_libraries.rda                                 |binary
 spNetwork-0.4.4/spNetwork/data/mtl_network.rda                                   |binary
 spNetwork-0.4.4/spNetwork/data/mtl_theatres.rda                                  |binary
 spNetwork-0.4.4/spNetwork/data/small_mtl_network.rda                             |binary
 spNetwork-0.4.4/spNetwork/inst/doc/Isochrones.R                                  |    2 
 spNetwork-0.4.4/spNetwork/inst/doc/Isochrones.Rmd                                |    2 
 spNetwork-0.4.4/spNetwork/inst/doc/Isochrones.html                               |  198 -
 spNetwork-0.4.4/spNetwork/inst/doc/KNetworkFunctions.R                           |   10 
 spNetwork-0.4.4/spNetwork/inst/doc/KNetworkFunctions.html                        |  105 -
 spNetwork-0.4.4/spNetwork/inst/doc/NKDE.R                                        |   50 
 spNetwork-0.4.4/spNetwork/inst/doc/NKDE.Rmd                                      |   61 
 spNetwork-0.4.4/spNetwork/inst/doc/NKDE.html                                     | 1004 ++++-----
 spNetwork-0.4.4/spNetwork/inst/doc/NetworkBuilding.html                          |  174 -
 spNetwork-0.4.4/spNetwork/inst/doc/SpatialWeightMatrices.html                    |  138 -
 spNetwork-0.4.4/spNetwork/inst/doc/TNKDE.R                                       |   65 
 spNetwork-0.4.4/spNetwork/inst/doc/TNKDE.Rmd                                     |   72 
 spNetwork-0.4.4/spNetwork/inst/doc/TNKDE.html                                    |  912 ++++----
 spNetwork-0.4.4/spNetwork/inst/extdata/results_vignette_kfunc.rda                |binary
 spNetwork-0.4.4/spNetwork/inst/extdata/results_vignette_network_build.rda        |binary
 spNetwork-0.4.4/spNetwork/inst/extdata/results_vignette_nkde.rda                 |binary
 spNetwork-0.4.4/spNetwork/inst/extdata/results_vignette_tnkde.rda                |binary
 spNetwork-0.4.4/spNetwork/inst/extdata/results_vignette_wmat.rda                 |binary
 spNetwork-0.4.4/spNetwork/man/adaptive_bw.Rd                                     |  114 -
 spNetwork-0.4.4/spNetwork/man/adaptive_bw.mc.Rd                                  |  116 -
 spNetwork-0.4.4/spNetwork/man/adaptive_bw_1d.Rd                                  |   42 
 spNetwork-0.4.4/spNetwork/man/adaptive_bw_tnkde.Rd                               |  139 -
 spNetwork-0.4.4/spNetwork/man/adaptive_bw_tnkde_cpp2.Rd                          |only
 spNetwork-0.4.4/spNetwork/man/add_vertices_lines.Rd                              |   58 
 spNetwork-0.4.4/spNetwork/man/aggregate_points.Rd                                |   70 
 spNetwork-0.4.4/spNetwork/man/bike_accidents.Rd                                  |   56 
 spNetwork-0.4.4/spNetwork/man/build_graph.Rd                                     |   20 
 spNetwork-0.4.4/spNetwork/man/build_graph_directed.Rd                            |   22 
 spNetwork-0.4.4/spNetwork/man/build_quadtree.Rd                                  |    5 
 spNetwork-0.4.4/spNetwork/man/bw_checks.Rd                                       |  121 -
 spNetwork-0.4.4/spNetwork/man/bw_cv_likelihood_calc.Rd                           |   34 
 spNetwork-0.4.4/spNetwork/man/bw_cv_likelihood_calc.mc.Rd                        |   28 
 spNetwork-0.4.4/spNetwork/man/bw_cvl_calc.Rd                                     |   28 
 spNetwork-0.4.4/spNetwork/man/bw_cvl_calc.mc.Rd                                  |   29 
 spNetwork-0.4.4/spNetwork/man/bw_tnkde_corr_factor.Rd                            |  132 -
 spNetwork-0.4.4/spNetwork/man/bw_tnkde_corr_factor_arr.Rd                        |only
 spNetwork-0.4.4/spNetwork/man/bw_tnkde_cv_likelihood_calc.Rd                     |only
 spNetwork-0.4.4/spNetwork/man/bw_tnkde_cv_likelihood_calc.mc.Rd                  |only
 spNetwork-0.4.4/spNetwork/man/calcEuclideanDistance3.Rd                          |only
 spNetwork-0.4.4/spNetwork/man/calc_gamma.Rd                                      |   44 
 spNetwork-0.4.4/spNetwork/man/calc_isochrones.Rd                                 |   12 
 spNetwork-0.4.4/spNetwork/man/continuousWorker_sparse.Rd                         |   84 
 spNetwork-0.4.4/spNetwork/man/continuousfunction.Rd                              |  121 -
 spNetwork-0.4.4/spNetwork/man/continuousfunction2.Rd                             |only
 spNetwork-0.4.4/spNetwork/man/correction_factor_time.Rd                          |   64 
 spNetwork-0.4.4/spNetwork/man/cross_kfunctions.Rd                                |   50 
 spNetwork-0.4.4/spNetwork/man/cross_kfunctions.mc.Rd                             |   14 
 spNetwork-0.4.4/spNetwork/man/discontinuousWorker_sparse.Rd                      |   78 
 spNetwork-0.4.4/spNetwork/man/esc_kernel_loo_tnkde_adpt.Rd                       |only
 spNetwork-0.4.4/spNetwork/man/esd_kernel_loo_tnkde_adpt.Rd                       |only
 spNetwork-0.4.4/spNetwork/man/ess_kernel_loo_tnkde_adpt.Rd                       |only
 spNetwork-0.4.4/spNetwork/man/figures/unnamed-chunk-8-1.png                      |binary
 spNetwork-0.4.4/spNetwork/man/graph_checking.Rd                                  |   92 
 spNetwork-0.4.4/spNetwork/man/k_nt_functions.Rd                                  |   48 
 spNetwork-0.4.4/spNetwork/man/k_nt_functions.mc.Rd                               |   54 
 spNetwork-0.4.4/spNetwork/man/kfunctions.Rd                                      |   42 
 spNetwork-0.4.4/spNetwork/man/kfunctions.mc.Rd                                   |   16 
 spNetwork-0.4.4/spNetwork/man/lines_center.Rd                                    |   50 
 spNetwork-0.4.4/spNetwork/man/lines_extremities.Rd                               |   44 
 spNetwork-0.4.4/spNetwork/man/list_coordinates_as_lines.Rd                       |   46 
 spNetwork-0.4.4/spNetwork/man/lixelize_lines.Rd                                  |   62 
 spNetwork-0.4.4/spNetwork/man/lixelize_lines.mc.Rd                               |    4 
 spNetwork-0.4.4/spNetwork/man/main_network_mtl.Rd                                |   48 
 spNetwork-0.4.4/spNetwork/man/mtl_libraries.Rd                                   |   50 
 spNetwork-0.4.4/spNetwork/man/mtl_network.Rd                                     |   50 
 spNetwork-0.4.4/spNetwork/man/mtl_theatres.Rd                                    |   50 
 spNetwork-0.4.4/spNetwork/man/network_listw.Rd                                   |    4 
 spNetwork-0.4.4/spNetwork/man/network_listw.mc.Rd                                |    4 
 spNetwork-0.4.4/spNetwork/man/nkde.Rd                                            |   29 
 spNetwork-0.4.4/spNetwork/man/nkde.mc.Rd                                         |    4 
 spNetwork-0.4.4/spNetwork/man/nkde_get_loo_values.Rd                             |    2 
 spNetwork-0.4.4/spNetwork/man/nkde_worker.Rd                                     |  162 -
 spNetwork-0.4.4/spNetwork/man/nkde_worker_bw_sel.Rd                              |  146 -
 spNetwork-0.4.4/spNetwork/man/prepare_elements_netlistw.Rd                       |   64 
 spNetwork-0.4.4/spNetwork/man/quartic_kernel_cpp.Rd                              |   43 
 spNetwork-0.4.4/spNetwork/man/remove_mirror_edges.Rd                             |   54 
 spNetwork-0.4.4/spNetwork/man/simple_nkde.Rd                                     |   84 
 spNetwork-0.4.4/spNetwork/man/small_mtl_network.Rd                               |   50 
 spNetwork-0.4.4/spNetwork/man/snapPointsToLines2.Rd                              |   92 
 spNetwork-0.4.4/spNetwork/man/spNetwork-package.Rd                               |   54 
 spNetwork-0.4.4/spNetwork/man/spatial_index.Rd                                   |   35 
 spNetwork-0.4.4/spNetwork/man/spatial_request.Rd                                 |   51 
 spNetwork-0.4.4/spNetwork/man/tnkde.Rd                                           |   20 
 spNetwork-0.4.4/spNetwork/man/tnkde.mc.Rd                                        |   10 
 spNetwork-0.4.4/spNetwork/man/tnkde_get_loo_values2.Rd                           |only
 spNetwork-0.4.4/spNetwork/man/tnkde_worker.Rd                                    |  188 -
 spNetwork-0.4.4/spNetwork/man/tnkde_worker_bw_sel.Rd                             |    6 
 spNetwork-0.4.4/spNetwork/man/worker_adaptive_bw_tnkde.Rd                        |   10 
 spNetwork-0.4.4/spNetwork/src/Makevars.in                                        |    1 
 spNetwork-0.4.4/spNetwork/src/Makevars.win                                       |    1 
 spNetwork-0.4.4/spNetwork/src/RcppExports.cpp                                    |  185 +
 spNetwork-0.4.4/spNetwork/src/base_kernel_funtions.cpp                           |   20 
 spNetwork-0.4.4/spNetwork/src/border_correction.cpp                              |   29 
 spNetwork-0.4.4/spNetwork/src/bw_selection_nkde.cpp                              |   84 
 spNetwork-0.4.4/spNetwork/src/bw_selection_tnkde.cpp                             | 1029 +++++++++-
 spNetwork-0.4.4/spNetwork/src/matrices_functions.cpp                             |   56 
 spNetwork-0.4.4/spNetwork/src/matrices_functions.h                               |    8 
 spNetwork-0.4.4/spNetwork/src/nkde_continuous.cpp                                |  526 ++++-
 spNetwork-0.4.4/spNetwork/src/nkde_discontinuous.cpp                             |  143 -
 spNetwork-0.4.4/spNetwork/tests/testthat/test_adaptive_bw_sf.R                   |  126 +
 spNetwork-0.4.4/spNetwork/tests/testthat/test_adaptive_bw_tnkde_interaction_sf.R |  334 +++
 spNetwork-0.4.4/spNetwork/tests/testthat/test_border_correction_sf.R             |  163 -
 spNetwork-0.4.4/spNetwork/tests/testthat/test_bw_selection_sf.R                  |  286 ++
 spNetwork-0.4.4/spNetwork/tests/testthat/test_bw_selection_tnkde_sf.R            |  453 ++++
 spNetwork-0.4.4/spNetwork/tests/testthat/test_isochrone_sf.R                     |   74 
 spNetwork-0.4.4/spNetwork/tests/testthat/test_knn_sf.R                           |    6 
 spNetwork-0.4.4/spNetwork/vignettes/Isochrones.Rmd                               |    2 
 spNetwork-0.4.4/spNetwork/vignettes/NKDE.Rmd                                     |   61 
 spNetwork-0.4.4/spNetwork/vignettes/TNKDE.Rmd                                    |   72 
 spNetwork-0.4.4/spNetwork/vignettes/images/animated_map.gif                      |binary
 144 files changed, 8105 insertions(+), 4113 deletions(-)

More information about spNetwork at CRAN
Permanent link

Package emmeans updated to version 1.10.2 with previous version 1.10.1 dated 2024-04-06

Title: Estimated Marginal Means, aka Least-Squares Means
Description: Obtain estimated marginal means (EMMs) for many linear, generalized linear, and mixed models. Compute contrasts or linear functions of EMMs, trends, and comparisons of slopes. Plots and other displays. Least-squares means are discussed, and the term "estimated marginal means" is suggested, in Searle, Speed, and Milliken (1980) Population marginal means in the linear model: An alternative to least squares means, The American Statistician 34(4), 216-221 <doi:10.1080/00031305.1980.10483031>.
Author: Russell V. Lenth [aut, cre, cph], Ben Bolker [ctb], Paul Buerkner [ctb], Iago Gine-Vazquez [ctb], Maxime Herve [ctb], Maarten Jung [ctb], Jonathon Love [ctb], Fernando Miguez [ctb], Julia Piaskowski [ctb], Hannes Riebl [ctb], Henrik Singmann [ctb]
Maintainer: Russell V. Lenth <russell-lenth@uiowa.edu>

Diff between emmeans versions 1.10.1 dated 2024-04-06 and 1.10.2 dated 2024-05-19

 emmeans-1.10.1/emmeans/inst/doc/re-engineering-clds.Rmd   |only
 emmeans-1.10.1/emmeans/vignettes/re-engineering-clds.Rmd  |only
 emmeans-1.10.2/emmeans/DESCRIPTION                        |   19 +-
 emmeans-1.10.2/emmeans/MD5                                |  109 +++++------
 emmeans-1.10.2/emmeans/NAMESPACE                          |    6 
 emmeans-1.10.2/emmeans/NEWS.md                            |   16 +
 emmeans-1.10.2/emmeans/R/0nly-internal.R                  |    8 
 emmeans-1.10.2/emmeans/R/emm-list.R                       |   89 ++++++++-
 emmeans-1.10.2/emmeans/R/emmeans-package.R                |    2 
 emmeans-1.10.2/emmeans/R/emmeans.R                        |    2 
 emmeans-1.10.2/emmeans/R/qdrg.R                           |    3 
 emmeans-1.10.2/emmeans/R/rbind.R                          |    2 
 emmeans-1.10.2/emmeans/R/zzz.R                            |  131 ++++----------
 emmeans-1.10.2/emmeans/README.md                          |   25 ++
 emmeans-1.10.2/emmeans/build/vignette.rds                 |binary
 emmeans-1.10.2/emmeans/inst/doc/AQuickStart.R             |    2 
 emmeans-1.10.2/emmeans/inst/doc/AQuickStart.Rmd           |   18 +
 emmeans-1.10.2/emmeans/inst/doc/AQuickStart.html          |   31 +++
 emmeans-1.10.2/emmeans/inst/doc/FAQs.R                    |    2 
 emmeans-1.10.2/emmeans/inst/doc/FAQs.html                 |    8 
 emmeans-1.10.2/emmeans/inst/doc/basics.R                  |   12 -
 emmeans-1.10.2/emmeans/inst/doc/basics.html               |   10 -
 emmeans-1.10.2/emmeans/inst/doc/comparisons.R             |    8 
 emmeans-1.10.2/emmeans/inst/doc/comparisons.html          |   16 -
 emmeans-1.10.2/emmeans/inst/doc/confidence-intervals.R    |    2 
 emmeans-1.10.2/emmeans/inst/doc/confidence-intervals.html |   10 -
 emmeans-1.10.2/emmeans/inst/doc/interactions.R            |    2 
 emmeans-1.10.2/emmeans/inst/doc/interactions.html         |   29 +--
 emmeans-1.10.2/emmeans/inst/doc/messy-data.R              |   10 -
 emmeans-1.10.2/emmeans/inst/doc/messy-data.html           |    8 
 emmeans-1.10.2/emmeans/inst/doc/models.html               |    4 
 emmeans-1.10.2/emmeans/inst/doc/predictions.R             |    6 
 emmeans-1.10.2/emmeans/inst/doc/predictions.html          |    4 
 emmeans-1.10.2/emmeans/inst/doc/re-engineering-clds.R     |    2 
 emmeans-1.10.2/emmeans/inst/doc/re-engineering-clds.html  |    6 
 emmeans-1.10.2/emmeans/inst/doc/re-engineering-clds.rmd   |only
 emmeans-1.10.2/emmeans/inst/doc/sophisticated.R           |    6 
 emmeans-1.10.2/emmeans/inst/doc/sophisticated.html        |    6 
 emmeans-1.10.2/emmeans/inst/doc/transformations.R         |   22 +-
 emmeans-1.10.2/emmeans/inst/doc/transformations.Rmd       |    2 
 emmeans-1.10.2/emmeans/inst/doc/transformations.html      |   10 -
 emmeans-1.10.2/emmeans/inst/doc/utilities.R               |    4 
 emmeans-1.10.2/emmeans/inst/doc/utilities.html            |    4 
 emmeans-1.10.2/emmeans/inst/doc/vignette-topics.Rmd       |   16 -
 emmeans-1.10.2/emmeans/inst/doc/vignette-topics.html      |   32 ---
 emmeans-1.10.2/emmeans/inst/doc/xplanations.R             |   12 -
 emmeans-1.10.2/emmeans/inst/doc/xplanations.html          |    6 
 emmeans-1.10.2/emmeans/inst/doc/xtending.R                |    2 
 emmeans-1.10.2/emmeans/inst/doc/xtending.html             |    8 
 emmeans-1.10.2/emmeans/man/emm_list-object.Rd             |   12 +
 emmeans-1.10.2/emmeans/man/extending-emmeans.Rd           |    2 
 emmeans-1.10.2/emmeans/man/figures                        |only
 emmeans-1.10.2/emmeans/man/rbind.emmGrid.Rd               |   12 +
 emmeans-1.10.2/emmeans/man/untidy.Rd                      |only
 emmeans-1.10.2/emmeans/vignettes/AQuickStart.Rmd          |   18 +
 emmeans-1.10.2/emmeans/vignettes/re-engineering-clds.rmd  |only
 emmeans-1.10.2/emmeans/vignettes/rvlstyle.html            |only
 emmeans-1.10.2/emmeans/vignettes/transformations.Rmd      |    2 
 emmeans-1.10.2/emmeans/vignettes/vignette-topics.Rmd      |   16 -
 59 files changed, 437 insertions(+), 357 deletions(-)

More information about emmeans at CRAN
Permanent link

Package radiant.multivariate updated to version 1.6.6 with previous version 1.6.1 dated 2023-09-23

Title: Multivariate Menu for Radiant: Business Analytics using R and Shiny
Description: The Radiant Multivariate menu includes interfaces for perceptual mapping, factor analysis, cluster analysis, and conjoint analysis. The application extends the functionality in 'radiant.data'.
Author: Vincent Nijs [aut, cre]
Maintainer: Vincent Nijs <radiant@rady.ucsd.edu>

Diff between radiant.multivariate versions 1.6.1 dated 2023-09-23 and 1.6.6 dated 2024-05-19

 DESCRIPTION                              |   14 +++++++-------
 MD5                                      |   18 +++++++++---------
 NEWS.md                                  |   11 ++++++++---
 inst/app/tools/analysis/conjoint_ui.R    |    2 +-
 inst/app/tools/analysis/full_factor_ui.R |    2 +-
 inst/app/tools/analysis/hclus_ui.R       |    2 +-
 inst/app/tools/analysis/kclus_ui.R       |    2 +-
 inst/app/tools/analysis/mds_ui.R         |    2 +-
 inst/app/tools/analysis/pre_factor_ui.R  |    2 +-
 inst/app/tools/analysis/prmap_ui.R       |    2 +-
 10 files changed, 31 insertions(+), 26 deletions(-)

More information about radiant.multivariate at CRAN
Permanent link

Package ggscidca updated to version 0.2.3 with previous version 0.2.1 dated 2024-05-13

Title: Plotting Decision Curve Analysis with Coloured Bars
Description: Decision curve analysis is a method for evaluating and comparing prediction models that incorporates clinical consequences, requires only the data set on which the models are tested, and can be applied to models that have either continuous or dichotomous results. The 'ggscidca' package adds coloured bars of discriminant relevance to the traditional decision curve. Improved practicality and aesthetics. This method was described by Balachandran VP (2015) <doi:10.1016/S1470-2045(14)71116-7>.
Author: Qiang Liu [aut, cre]
Maintainer: Qiang Liu <dege857@163.com>

Diff between ggscidca versions 0.2.1 dated 2024-05-13 and 0.2.3 dated 2024-05-19

 DESCRIPTION         |    9 +++++----
 MD5                 |   18 ++++++++++++++----
 NAMESPACE           |    4 ++++
 R/cox.tcdca.R       |only
 R/getplot.R         |    2 +-
 R/modeldata.R       |    6 ++++++
 R/netdata.R         |only
 R/netdata.ksvm.R    |only
 R/scidca.svm.R      |only
 R/tcdca.R           |only
 man/cox.tcdca.Rd    |only
 man/netdata.Rd      |only
 man/netdata.ksvm.Rd |only
 man/scidca.svm.Rd   |only
 man/tcdca.Rd        |only
 15 files changed, 30 insertions(+), 9 deletions(-)

More information about ggscidca at CRAN
Permanent link

Package fedmatch updated to version 2.0.6 with previous version 2.0.5 dated 2021-11-22

Title: Fast, Flexible, and User-Friendly Record Linkage Methods
Description: Provides a flexible set of tools for matching two un-linked data sets. 'fedmatch' allows for three ways to match data: exact matches, fuzzy matches, and multi-variable matches. It also allows an easy combination of these three matches via the tier matching function.
Author: Melanie Friedrichs [aut], Chris Webster [aut, cre], Blake Marsh [aut], Jacob Dice [aut], Seung Lee [aut]
Maintainer: Chris Webster <chris0webster@gmail.com>

Diff between fedmatch versions 2.0.5 dated 2021-11-22 and 2.0.6 dated 2024-05-19

 DESCRIPTION                       |    8 
 MD5                               |   76 +-
 NEWS.md                           |   11 
 R/build_multivar_settings.R       |    2 
 R/build_score_settings.R          |    5 
 R/build_tier.R                    |    4 
 R/calculate_weights.R             |    6 
 R/clean_strings.R                 |    2 
 R/merge_plus.R                    |    6 
 R/multivar_match.R                |    2 
 R/multivar_match_helpers.R        |   19 
 R/tier_match.R                    |    4 
 README.md                         |   23 
 build/vignette.rds                |binary
 inst/doc/Fuzzy-matching.R         |    2 
 inst/doc/Fuzzy-matching.Rmd       |    2 
 inst/doc/Fuzzy-matching.html      |  661 ++++++++++++++++------
 inst/doc/Intro-to-fedmatch.R      |    2 
 inst/doc/Intro-to-fedmatch.html   | 1023 ++++++++++++++++++++++------------
 inst/doc/Multivar_matching.R      |    2 
 inst/doc/Multivar_matching.Rmd    |    4 
 inst/doc/Multivar_matching.html   | 1141 ++++++++++++++++++++++++--------------
 inst/doc/Using-clean-strings.R    |    2 
 inst/doc/Using-clean-strings.html |  485 +++++++++++-----
 inst/doc/Using-tier-match.R       |    2 
 inst/doc/Using-tier-match.html    |  542 +++++++++++++-----
 man/build_multivar_settings.Rd    |    2 
 man/build_score_settings.Rd       |    2 
 man/build_tier.Rd                 |    4 
 man/calculate_weights.Rd          |    2 
 man/fuzzy_match.Rd                |    4 
 man/merge_plus.Rd                 |    4 
 man/multivar_match.Rd             |    2 
 man/tier_match.Rd                 |    4 
 src/Makevars                      |    1 
 src/Makevars.win                  |    1 
 tests/testthat/test_fuzzy_merge.R |    4 
 vignettes/Fuzzy-matching.Rmd      |    2 
 vignettes/Multivar_matching.Rmd   |    4 
 39 files changed, 2761 insertions(+), 1311 deletions(-)

More information about fedmatch at CRAN
Permanent link

Package sgboost updated to version 0.1.3 with previous version 0.1.2 dated 2024-04-22

Title: Sparse-Group Boosting
Description: Sparse-group boosting to be used in conjunction with the 'mboost' for modeling grouped data. Applicable to all sparse-group lasso type problems where within-group and between-group sparsity is desired. Interprets and visualizes individual variables and groups.
Author: Fabian Obster [aut, cre, cph]
Maintainer: Fabian Obster <fabian.obster@unibw.de>

Diff between sgboost versions 0.1.2 dated 2024-04-22 and 0.1.3 dated 2024-05-19

 DESCRIPTION                         |    9 +
 MD5                                 |   21 ++--
 NAMESPACE                           |    2 
 NEWS.md                             |    4 
 R/create_formula.R                  |   10 +-
 R/plot_path.R                       |   93 ++++++++++++++++---
 README.md                           |    7 +
 inst/WORDLIST                       |only
 inst/doc/sgboost.html               |  176 ++++++++++++++++++------------------
 man/create_formula.Rd               |    6 +
 man/figures/README-minimal-ex-1.png |binary
 tests/spelling.R                    |only
 tests/testthat/test-plot_path.R     |only
 13 files changed, 214 insertions(+), 114 deletions(-)

More information about sgboost at CRAN
Permanent link

Package openairmaps updated to version 0.9.0 with previous version 0.8.1 dated 2023-11-03

Title: Create Maps of Air Pollution Data
Description: Combine the air quality data analysis methods of 'openair' with the JavaScript 'Leaflet' (<https://leafletjs.com/>) library. Functionality includes plotting site maps, "directional analysis" figures such as polar plots, and air mass trajectories.
Author: Jack Davison [cre, aut], David Carslaw [aut]
Maintainer: Jack Davison <jack.davison@ricardo.com>

Diff between openairmaps versions 0.8.1 dated 2023-11-03 and 0.9.0 dated 2024-05-19

 openairmaps-0.8.1/openairmaps/R/polar_data.R                      |only
 openairmaps-0.8.1/openairmaps/R/traj_data.R                       |only
 openairmaps-0.8.1/openairmaps/man/annulusMapStatic.Rd             |only
 openairmaps-0.8.1/openairmaps/man/diffMapStatic.Rd                |only
 openairmaps-0.8.1/openairmaps/man/figures                         |only
 openairmaps-0.8.1/openairmaps/man/freqMapStatic.Rd                |only
 openairmaps-0.8.1/openairmaps/man/percentileMapStatic.Rd          |only
 openairmaps-0.8.1/openairmaps/man/polarMapStatic.Rd               |only
 openairmaps-0.8.1/openairmaps/man/pollroseMapStatic.Rd            |only
 openairmaps-0.8.1/openairmaps/man/windroseMapStatic.Rd            |only
 openairmaps-0.9.0/openairmaps/DESCRIPTION                         |   17 
 openairmaps-0.9.0/openairmaps/MD5                                 |  111 -
 openairmaps-0.9.0/openairmaps/NAMESPACE                           |    2 
 openairmaps-0.9.0/openairmaps/NEWS.md                             |   48 
 openairmaps-0.9.0/openairmaps/R/addPolarMarkers.R                 |   12 
 openairmaps-0.9.0/openairmaps/R/addTrajPaths.R                    |   49 
 openairmaps-0.9.0/openairmaps/R/data.R                            |only
 openairmaps-0.9.0/openairmaps/R/network_networkMap.R              |  159 +-
 openairmaps-0.9.0/openairmaps/R/network_searchNetwork.R           |   72 
 openairmaps-0.9.0/openairmaps/R/openairmaps-package.R             |   94 -
 openairmaps-0.9.0/openairmaps/R/polar_annulusMap.R                |  380 +----
 openairmaps-0.9.0/openairmaps/R/polar_diffMap.R                   |  456 ++----
 openairmaps-0.9.0/openairmaps/R/polar_freqMap.R                   |  496 ++----
 openairmaps-0.9.0/openairmaps/R/polar_percentileMap.R             |  450 ++----
 openairmaps-0.9.0/openairmaps/R/polar_polarMap.R                  |  750 +++++-----
 openairmaps-0.9.0/openairmaps/R/polar_pollroseMap.R               |  373 ++--
 openairmaps-0.9.0/openairmaps/R/polar_windroseMap.R               |  366 ++--
 openairmaps-0.9.0/openairmaps/R/traj_trajLevelMap.R               |   78 -
 openairmaps-0.9.0/openairmaps/R/traj_trajMap.R                    |  369 +++-
 openairmaps-0.9.0/openairmaps/R/utilities.R                       |  204 +-
 openairmaps-0.9.0/openairmaps/R/utils-map.R                       |  328 +++-
 openairmaps-0.9.0/openairmaps/R/utils-pipe.R                      |    2 
 openairmaps-0.9.0/openairmaps/R/zDeprecated.R                     |only
 openairmaps-0.9.0/openairmaps/README.md                           |   80 -
 openairmaps-0.9.0/openairmaps/inst                                |only
 openairmaps-0.9.0/openairmaps/man/addPolarMarkers.Rd              |    4 
 openairmaps-0.9.0/openairmaps/man/addTrajPaths.Rd                 |    9 
 openairmaps-0.9.0/openairmaps/man/annulusMap.Rd                   |  329 +++-
 openairmaps-0.9.0/openairmaps/man/buildPopup.Rd                   |   87 -
 openairmaps-0.9.0/openairmaps/man/convertPostcode.Rd              |    6 
 openairmaps-0.9.0/openairmaps/man/deprecated-static-polar-maps.Rd |only
 openairmaps-0.9.0/openairmaps/man/diffMap.Rd                      |  302 +++-
 openairmaps-0.9.0/openairmaps/man/freqMap.Rd                      |  345 +++-
 openairmaps-0.9.0/openairmaps/man/networkMap.Rd                   |  109 +
 openairmaps-0.9.0/openairmaps/man/percentileMap.Rd                |  325 +++-
 openairmaps-0.9.0/openairmaps/man/polarMap.Rd                     |  330 +++-
 openairmaps-0.9.0/openairmaps/man/polar_data.Rd                   |    2 
 openairmaps-0.9.0/openairmaps/man/pollroseMap.Rd                  |  346 +++-
 openairmaps-0.9.0/openairmaps/man/quickTextHTML.Rd                |   16 
 openairmaps-0.9.0/openairmaps/man/searchNetwork.Rd                |  108 +
 openairmaps-0.9.0/openairmaps/man/trajLevelMap.Rd                 |   93 +
 openairmaps-0.9.0/openairmaps/man/trajLevelMapStatic.Rd           |   83 -
 openairmaps-0.9.0/openairmaps/man/trajMap.Rd                      |  134 +
 openairmaps-0.9.0/openairmaps/man/trajMapStatic.Rd                |  150 +-
 openairmaps-0.9.0/openairmaps/man/traj_data.Rd                    |    2 
 openairmaps-0.9.0/openairmaps/man/windroseMap.Rd                  |  313 +++-
 56 files changed, 4882 insertions(+), 3107 deletions(-)

More information about openairmaps at CRAN
Permanent link

Package streamConnect updated to version 0.0-2 with previous version 0.0-1 dated 2024-05-17

Title: Connecting Stream Mining Components Using Sockets and Web Services
Description: Adds functionality to connect stream mining components from package stream using sockets and Web services. The package can be used create distributed workflows and create plumber-based Web services which can be deployed on most common cloud services.
Author: Michael Hahsler [aut, cre, cph]
Maintainer: Michael Hahsler <mhahsler@lyle.smu.edu>

Diff between streamConnect versions 0.0-1 dated 2024-05-17 and 0.0-2 dated 2024-05-19

 DESCRIPTION                   |    8 -
 MD5                           |   26 +++--
 NAMESPACE                     |    1 
 NEWS.md                       |    5 +
 R/DSD_ReadSocket.R            |   12 --
 R/publish_DSD_via_Socket.R    |    9 -
 R/retry.R                     |only
 README.md                     |   20 +++-
 inst/doc/connections.R        |   13 +-
 inst/doc/connections.Rmd      |   24 ++---
 inst/doc/connections.html     |  195 +++++++++++++++++++++---------------------
 man/DSD_ReadSocket.Rd         |    8 -
 man/publish_DSD_via_Socket.Rd |    9 -
 man/retry.Rd                  |only
 vignettes/connections.Rmd     |   24 ++---
 15 files changed, 179 insertions(+), 175 deletions(-)

More information about streamConnect at CRAN
Permanent link

Package prqlr updated to version 0.8.1 with previous version 0.8.0 dated 2024-02-14

Title: R Bindings for the 'prqlc' Rust Library
Description: Provides a function to convert 'PRQL' strings to 'SQL' strings. Combined with other R functions that take 'SQL' as an argument, 'PRQL' can be used on R.
Author: Tatsuya Shima [aut, cre], Authors of the dependency Rust crates [aut]
Maintainer: Tatsuya Shima <ts1s1andn@gmail.com>

Diff between prqlr versions 0.8.0 dated 2024-02-14 and 0.8.1 dated 2024-05-19

 prqlr-0.8.0/prqlr/R/wrappers.R                          |only
 prqlr-0.8.1/prqlr/DESCRIPTION                           |   12 
 prqlr-0.8.1/prqlr/LICENSE.note                          |  182 +++-----
 prqlr-0.8.1/prqlr/MD5                                   |   36 -
 prqlr-0.8.1/prqlr/NEWS.md                               |    4 
 prqlr-0.8.1/prqlr/R/000-wrappers.R                      |only
 prqlr-0.8.1/prqlr/build/vignette.rds                    |binary
 prqlr-0.8.1/prqlr/configure                             |    8 
 prqlr-0.8.1/prqlr/inst/AUTHORS                          |   11 
 prqlr-0.8.1/prqlr/inst/doc/knitr.html                   |   12 
 prqlr-0.8.1/prqlr/inst/doc/prqlr.html                   |    2 
 prqlr-0.8.1/prqlr/man/prql_get_targets.Rd               |    2 
 prqlr-0.8.1/prqlr/src/init.c                            |   45 +-
 prqlr-0.8.1/prqlr/src/rust/Cargo.lock                   |  345 +++++++---------
 prqlr-0.8.1/prqlr/src/rust/Cargo.toml                   |    4 
 prqlr-0.8.1/prqlr/src/rust/api.h                        |   12 
 prqlr-0.8.1/prqlr/src/rust/vendor.tar.xz                |binary
 prqlr-0.8.1/prqlr/tests/testthat/_snaps/knitr-engine.md |   28 -
 prqlr-0.8.1/prqlr/tests/testthat/test-compile.R         |    4 
 prqlr-0.8.1/prqlr/tools/lib-sums.tsv                    |   10 
 20 files changed, 334 insertions(+), 383 deletions(-)

More information about prqlr at CRAN
Permanent link

Package MBBEFDLite updated to version 0.0.2 with previous version 0.0.1 dated 2024-05-15

Title: Statistical Functions for the Maxwell-Boltzmann-Bose-Einstein-Fermi-Dirac (MBBEFD) Family of Distributions
Description: Provides probability mass, distribution, quantile, random variate generation, and method-of-moments parameter fitting for the MBBEFD family of distributions used in insurance modeling as described in Bernegger (1997) <doi:10.2143/AST.27.1.563208> without any external dependencies.
Author: Avraham Adler [aut, cre, cph]
Maintainer: Avraham Adler <Avraham.Adler@gmail.com>

Diff between MBBEFDLite versions 0.0.1 dated 2024-05-15 and 0.0.2 dated 2024-05-19

 MBBEFDLite-0.0.1/MBBEFDLite/inst/tinytest/test_version.R          |only
 MBBEFDLite-0.0.2/MBBEFDLite/DESCRIPTION                           |    6 +--
 MBBEFDLite-0.0.2/MBBEFDLite/MD5                                   |   16 +++++-----
 MBBEFDLite-0.0.2/MBBEFDLite/README.md                             |    4 +-
 MBBEFDLite-0.0.2/MBBEFDLite/build/partial.rdb                     |binary
 MBBEFDLite-0.0.2/MBBEFDLite/inst/CITATION                         |    6 +--
 MBBEFDLite-0.0.2/MBBEFDLite/inst/NEWS.Rd                          |   15 +++++++++
 MBBEFDLite-0.0.2/MBBEFDLite/inst/tinytest/test_package_metadata.R |only
 MBBEFDLite-0.0.2/MBBEFDLite/man/dpqrmb.Rd                         |    2 -
 MBBEFDLite-0.0.2/MBBEFDLite/man/ecmb.Rd                           |   16 ++++++----
 10 files changed, 43 insertions(+), 22 deletions(-)

More information about MBBEFDLite at CRAN
Permanent link

Package cmprsk updated to version 2.2-12 with previous version 2.2-11 dated 2022-01-06

Title: Subdistribution Analysis of Competing Risks
Description: Estimation, testing and regression modeling of subdistribution functions in competing risks, as described in Gray (1988), A class of K-sample tests for comparing the cumulative incidence of a competing risk, Ann. Stat. 16:1141-1154 <DOI:10.1214/aos/1176350951>, and Fine JP and Gray RJ (1999), A proportional hazards model for the subdistribution of a competing risk, JASA, 94:496-509, <DOI:10.1080/01621459.1999.10474144>.
Author: Bob Gray <gray@jimmy.harvard.edu>
Maintainer: Bob Gray <gray@jimmy.harvard.edu>

Diff between cmprsk versions 2.2-11 dated 2022-01-06 and 2.2-12 dated 2024-05-19

 DESCRIPTION             |    8 ++++----
 MD5                     |    8 ++++----
 man/plot.predict.crr.Rd |    4 ++--
 src/cincsub.f           |    3 ++-
 src/crstm.f             |   47 +++++++++++++++++++++++++++++------------------
 5 files changed, 41 insertions(+), 29 deletions(-)

More information about cmprsk at CRAN
Permanent link

Package modelsummary updated to version 2.1.0 with previous version 2.0.0 dated 2024-03-30

Title: Summary Tables and Plots for Statistical Models and Data: Beautiful, Customizable, and Publication-Ready
Description: Create beautiful and customizable tables to summarize several statistical models side-by-side. Draw coefficient plots, multi-level cross-tabs, dataset summaries, balance tables (a.k.a. "Table 1s"), and correlation matrices. This package supports dozens of statistical models, and it can produce tables in HTML, LaTeX, Word, Markdown, PDF, PowerPoint, Excel, RTF, JPG, or PNG. Tables can easily be embedded in 'Rmarkdown' or 'knitr' dynamic documents. Details can be found in Arel-Bundock (2022) <doi:10.18637/jss.v103.i01>.
Author: Vincent Arel-Bundock [aut, cre] , Joachim Gassen [ctb] , Nathan Eastwood [ctb], Nick Huntington-Klein [ctb] , Moritz Schwarz [ctb] , Benjamin Elbers [ctb] , Grant McDermott [ctb] , Lukas Wallrich [ctb]
Maintainer: Vincent Arel-Bundock <vincent.arel-bundock@umontreal.ca>

Diff between modelsummary versions 2.0.0 dated 2024-03-30 and 2.1.0 dated 2024-05-19

 DESCRIPTION                                                       |   24 +-
 MD5                                                               |  114 +++++-----
 NEWS.md                                                           |   23 ++
 R/datasummary_balance.R                                           |   23 +-
 R/datasummary_correlation.R                                       |   67 +++++
 R/datasummary_df.R                                                |    1 
 R/datasummary_skim.R                                              |    2 
 R/factory.R                                                       |    2 
 R/factory_flextable.R                                             |   13 +
 R/factory_kableExtra.R                                            |    3 
 R/format_estimates.R                                              |    9 
 R/get_gof.R                                                       |   40 ++-
 R/get_vcov.R                                                      |    1 
 R/map_estimates.R                                                 |    6 
 R/methods_stats.R                                                 |    5 
 R/modelsummary.R                                                  |   31 +-
 R/modelsummary_rbind.R                                            |    2 
 R/rename_statistics.R                                             |   15 -
 R/sanitize_vcov.R                                                 |    5 
 R/sanity_checks.R                                                 |    9 
 R/update_modelsummary.R                                           |    3 
 R/utils_labels.R                                                  |    7 
 R/zzz.R                                                           |    6 
 build/partial.rdb                                                 |binary
 inst/tinytest/_tinysnapshot/escape-caption_notes.txt              |    2 
 inst/tinytest/_tinysnapshot/escape-issue707_01.txt                |    6 
 inst/tinytest/_tinysnapshot/escape-issue707_02.txt                |    6 
 inst/tinytest/_tinysnapshot/escape-issue707_03.txt                |    6 
 inst/tinytest/_tinysnapshot/escape-issue707_04.txt                |    6 
 inst/tinytest/_tinysnapshot/escape-latex_tabular_escape_false.txt |only
 inst/tinytest/_tinysnapshot/escape-latex_tabular_escape_true.txt  |only
 inst/tinytest/_tinysnapshot/escape-panel_escape_FALSE.txt         |   10 
 inst/tinytest/_tinysnapshot/escape-panel_escape_TRUE.txt          |   10 
 inst/tinytest/_tinysnapshot_review                                |only
 inst/tinytest/qayztocfynadtqlpmxceqftkvpwjih.pdf                  |only
 inst/tinytest/test-coef_map.R                                     |   14 +
 inst/tinytest/test-datasummary_balance.R                          |    6 
 inst/tinytest/test-datasummary_correlation.R                      |only
 inst/tinytest/test-escape.R                                       |   13 +
 inst/tinytest/test-flextable.R                                    |   17 +
 inst/tinytest/test-kableExtra.R                                   |   14 +
 inst/tinytest/test-labels.R                                       |    8 
 inst/tinytest/test-shape.R                                        |    5 
 inst/tinytest/test-supported.R                                    |   13 -
 man/datasummary.Rd                                                |    3 
 man/datasummary_balance.Rd                                        |   11 
 man/datasummary_correlation.Rd                                    |   21 +
 man/datasummary_correlation_format.Rd                             |   11 
 man/datasummary_crosstab.Rd                                       |    3 
 man/datasummary_skim.Rd                                           |    3 
 man/dsummary.Rd                                                   |    3 
 man/get_estimates.Rd                                              |    2 
 man/get_gof.Rd                                                    |    4 
 man/get_vcov.Rd                                                   |    2 
 man/get_vcov.mlm.Rd                                               |    2 
 man/modelplot.Rd                                                  |    2 
 man/modelsummary.Rd                                               |   24 +-
 man/msummary.Rd                                                   |   24 +-
 58 files changed, 473 insertions(+), 189 deletions(-)

More information about modelsummary at CRAN
Permanent link

Package glossr updated to version 0.8.0 with previous version 0.7.0 dated 2023-03-18

Title: Use Interlinear Glosses in R Markdown
Description: Read examples with interlinear glosses from files or from text and print them in a way compatible with both Latex and HTML outputs.
Author: Mariana Montes [aut, cre] , Benjamin Chauvette [cph]
Maintainer: Mariana Montes <montesmariana@gmail.com>

Diff between glossr versions 0.7.0 dated 2023-03-18 and 0.8.0 dated 2024-05-19

 glossr-0.7.0/glossr/R/utils-pipe.R                     |only
 glossr-0.7.0/glossr/man/pipe.Rd                        |only
 glossr-0.8.0/glossr/DESCRIPTION                        |   16 
 glossr-0.8.0/glossr/MD5                                |   86 -
 glossr-0.8.0/glossr/NAMESPACE                          |    8 
 glossr-0.8.0/glossr/NEWS.md                            |    8 
 glossr-0.8.0/glossr/R/config.R                         |only
 glossr-0.8.0/glossr/R/gloss.R                          |   16 
 glossr-0.8.0/glossr/R/gloss_render.R                   |   63 -
 glossr-0.8.0/glossr/R/glossr-package.R                 |  130 --
 glossr-0.8.0/glossr/R/html_utils.R                     |   55 
 glossr-0.8.0/glossr/R/markdown.R                       |   29 
 glossr-0.8.0/glossr/R/pdf_utils.R                      |   31 
 glossr-0.8.0/glossr/R/utils.R                          |   23 
 glossr-0.8.0/glossr/R/word_utils.R                     |  312 ++---
 glossr-0.8.0/glossr/R/zzz.R                            |only
 glossr-0.8.0/glossr/README.md                          |   15 
 glossr-0.8.0/glossr/build/vignette.rds                 |binary
 glossr-0.8.0/glossr/inst/WORDLIST                      |only
 glossr-0.8.0/glossr/inst/doc/gloss_factory.R           |   24 
 glossr-0.8.0/glossr/inst/doc/gloss_factory.Rmd         |   32 
 glossr-0.8.0/glossr/inst/doc/gloss_factory.html        |  153 +-
 glossr-0.8.0/glossr/inst/doc/glossr.Rmd                |    4 
 glossr-0.8.0/glossr/inst/doc/glossr.html               |   26 
 glossr-0.8.0/glossr/inst/doc/glossr_how.R              |   28 
 glossr-0.8.0/glossr/inst/doc/glossr_how.Rmd            |   36 
 glossr-0.8.0/glossr/inst/doc/glossr_how.html           |  184 +--
 glossr-0.8.0/glossr/inst/doc/styling.R                 |   89 -
 glossr-0.8.0/glossr/inst/doc/styling.Rmd               |  237 +++
 glossr-0.8.0/glossr/inst/doc/styling.html              | 1019 +++++++++++++++--
 glossr-0.8.0/glossr/inst/extdata                       |only
 glossr-0.8.0/glossr/inst/packages.bib                  |   17 
 glossr-0.8.0/glossr/man/as_gloss.Rd                    |    6 
 glossr-0.8.0/glossr/man/config_from_file.Rd            |only
 glossr-0.8.0/glossr/man/gloss_data.Rd                  |    2 
 glossr-0.8.0/glossr/man/gloss_df.Rd                    |    6 
 glossr-0.8.0/glossr/man/glossr-package.Rd              |   58 
 glossr-0.8.0/glossr/man/print_config.Rd                |only
 glossr-0.8.0/glossr/man/set_style_options.Rd           |   36 
 glossr-0.8.0/glossr/man/use_glossr.Rd                  |   16 
 glossr-0.8.0/glossr/tests/testthat/_snaps              |only
 glossr-0.8.0/glossr/tests/testthat/test-config.R       |only
 glossr-0.8.0/glossr/tests/testthat/test-gloss_render.R |   17 
 glossr-0.8.0/glossr/tests/testthat/test-pdf_utils.R    |   12 
 glossr-0.8.0/glossr/tests/testthat/test-word_utils.R   |   42 
 glossr-0.8.0/glossr/vignettes/gloss_factory.Rmd        |   32 
 glossr-0.8.0/glossr/vignettes/glossr.Rmd               |    4 
 glossr-0.8.0/glossr/vignettes/glossr_how.Rmd           |   36 
 glossr-0.8.0/glossr/vignettes/styling.Rmd              |  237 +++
 49 files changed, 2055 insertions(+), 1090 deletions(-)

More information about glossr at CRAN
Permanent link

Package xaringanExtra updated to version 0.8.0 with previous version 0.7.0 dated 2022-07-16

Title: Extras and Extensions for 'xaringan' Slides
Description: Extras and extensions for 'xaringan' slides. Navigate your slides with tile view. Make your slides editable, live! Announce slide changes with subtle tones. Animate slide transitions with 'animate.css'. Add tabbed panels to slides with 'panelset'. Use the 'Tachyons CSS' utility toolkit for rapid slide development. Scribble on your slides. Add a copy button to your code chunks with 'clipboard'. Add a logo or top or bottom banner to every slide. Broadcast slides to stay in sync with remote viewers. Include yourself in your slides with 'webcam'. Plus a whole lot more!
Author: Garrick Aden-Buie [aut, cre] , Matthew T. Warkentin [aut] , Yotam Mann [cph] , Daniel Eden [cph] , Tachyons authors [cph], Klaus Hartl, Fagner Brack, GitHub Contributors [cph] , Chris Andrejewski [cph] , Eric Londaits [cph] , Zeno Rocha [cph] , Nikit [...truncated...]
Maintainer: Garrick Aden-Buie <garrick@adenbuie.com>

Diff between xaringanExtra versions 0.7.0 dated 2022-07-16 and 0.8.0 dated 2024-05-19

 DESCRIPTION                       |    8 
 MD5                               |   47 +-
 NEWS.md                           |  141 ++++++-
 R/panelset.R                      |  113 ++++-
 README.md                         |   75 +--
 inst/panelset/panelset.css        |  240 +++++++-----
 inst/panelset/panelset.js         |  723 ++++++++++++++++++++++++++++++++------
 man/animate_css.Rd                |    8 
 man/clipboard.Rd                  |    8 
 man/editable.Rd                   |    6 
 man/extra_styles.Rd               |    6 
 man/fit_screen.Rd                 |    6 
 man/freezeframe.Rd                |    6 
 man/logo.Rd                       |    6 
 man/panelset.Rd                   |   27 -
 man/scribble.Rd                   |    8 
 man/search.Rd                     |    8 
 man/share_again.Rd                |    6 
 man/slide_tone.Rd                 |    6 
 man/tachyons.Rd                   |    6 
 man/tile_view.Rd                  |    6 
 man/webcam.Rd                     |    6 
 tests/testthat/_snaps/banner.md   |   31 +
 tests/testthat/_snaps/panelset.md |only
 tests/testthat/test-panelset.R    |  182 +++------
 25 files changed, 1214 insertions(+), 465 deletions(-)

More information about xaringanExtra at CRAN
Permanent link

Package LikertMakeR updated to version 0.3.0 with previous version 0.2.0 dated 2024-03-02

Title: Synthesise and Correlate Rating-Scale Data
Description: Synthesise rating-scale data with predefined first & second moments (mean & standard deviation) and, optionally, correlate multiple vectors with predefined correlation matrix. Also generate synthetic rating-scale data with predefined Cronbach's Alpha, or generate rating-scale items from a predefined scale.
Author: Hume Winzar [cre, aut]
Maintainer: Hume Winzar <winzar@gmail.com>

Diff between LikertMakeR versions 0.2.0 dated 2024-03-02 and 0.3.0 dated 2024-05-19

 DESCRIPTION                          |   40 -
 MD5                                  |   58 +-
 NAMESPACE                            |   12 
 NEWS.md                              |   36 +
 R/alpha.R                            |   10 
 R/correlateScales.R                  |only
 R/eigenvalues.R                      |    2 
 R/lcor.R                             |   26 
 R/lexact.R                           |   16 
 R/lfast.R                            |   69 +-
 R/makeCorrAlpha.R                    |   85 ++
 R/makeItems.R                        |   59 +-
 R/makeItemsScale.R                   |only
 README.md                            |  477 +++++++++++++---
 build/vignette.rds                   |binary
 inst/CITATION                        |    2 
 inst/doc/LikertMakeR_vignette.R      |  332 +++++++----
 inst/doc/LikertMakeR_vignette.Rmd    |  495 ++++++++++++-----
 inst/doc/LikertMakeR_vignette.html   |  996 ++++++++++++++++++++++-------------
 man/alpha.Rd                         |    8 
 man/correlateScales.Rd               |only
 man/figures                          |only
 man/lcor.Rd                          |   15 
 man/lexact.Rd                        |   15 
 man/lfast.Rd                         |   39 -
 man/makeCorrAlpha.Rd                 |   37 -
 man/makeItems.Rd                     |   45 -
 man/makeItemsScale.Rd                |only
 tests/testthat/test-eigenvalues.R    |   22 
 tests/testthat/test-makeItems.R      |    4 
 tests/testthat/test-makeItemsScale.R |only
 vignettes/LikertMakeR_3.png          |only
 vignettes/LikertMakeR_4.png          |only
 vignettes/LikertMakeR_vignette.Rmd   |  495 ++++++++++++-----
 34 files changed, 2381 insertions(+), 1014 deletions(-)

More information about LikertMakeR at CRAN
Permanent link

Package FMAT updated to version 2024.5 with previous version 2024.4 dated 2024-04-29

Title: The Fill-Mask Association Test
Description: The Fill-Mask Association Test ('FMAT') is an integrative and probability-based method using Masked Language Models to measure conceptual associations (e.g., attitudes, biases, stereotypes, social norms, cultural values) as propositions in natural language. Supported language models include 'BERT' <doi:10.48550/arXiv.1810.04805> and its variants available at 'Hugging Face' <https://huggingface.co/models?pipeline_tag=fill-mask>. Methodological references and installation guidance are provided at <https://psychbruce.github.io/FMAT/>.
Author: Han-Wu-Shuang Bao [aut, cre]
Maintainer: Han-Wu-Shuang Bao <baohws@foxmail.com>

Diff between FMAT versions 2024.4 dated 2024-04-29 and 2024.5 dated 2024-05-19

 DESCRIPTION          |    8 -
 MD5                  |   21 ++--
 NAMESPACE            |    1 
 NEWS.md              |    7 +
 R/FMAT.R             |  235 +++++++++++++++++++++++++++++++++++++++++----------
 README.md            |  221 ++++++++++++++++++++++++-----------------------
 man/BERT_download.Rd |    4 
 man/BERT_info.Rd     |only
 man/BERT_vocab.Rd    |   30 +++++-
 man/FMAT_load.Rd     |    7 -
 man/FMAT_run.Rd      |   12 ++
 man/ICC_models.Rd    |    2 
 12 files changed, 375 insertions(+), 173 deletions(-)

More information about FMAT at CRAN
Permanent link

Sat, 18 May 2024

Package ruminate updated to version 0.2.3 with previous version 0.2.2 dated 2024-03-13

Title: A Pharmacometrics Data Transformation and Analysis Tool
Description: Exploration of pharmacometrics data involves both general tools (transformation and plotting) and specific techniques (non-compartmental analysis). This kind of exploration is generally accomplished by utilizing different packages. The purpose of 'ruminate' is to create a 'shiny' interface to make these tools more broadly available while creating reproducible results.
Author: John Harrold [aut, cre]
Maintainer: John Harrold <john.m.harrold@gmail.com>

Diff between ruminate versions 0.2.2 dated 2024-03-13 and 0.2.3 dated 2024-05-18

 DESCRIPTION                               |   12 
 MD5                                       |   35 +-
 NAMESPACE                                 |    2 
 NEWS.md                                   |    7 
 R/NCA_Server.R                            |   72 +++-
 R/ruminate.R                              |   67 +++
 R/simulate_rules.R                        |  505 ++++++++++++++++++++++++++++--
 README.md                                 |   19 +
 inst/doc/deployment.R                     |   20 +
 inst/doc/deployment.Rmd                   |   38 ++
 inst/doc/deployment.html                  |   39 ++
 inst/doc/noncompartmental_analysis.html   |   82 ++++
 inst/templates/NCA.yaml                   |   58 ++-
 inst/templates/ruminate_devel.R           |   30 +
 inst/test_apps/simulate_rules_ext_funcs.R |   23 -
 inst/test_apps/simulate_rules_funcs.R     |   30 +
 inst/test_apps/test_rxode2_system.R       |    1 
 man/ruminate_check.Rd                     |only
 vignettes/deployment.Rmd                  |   38 ++
 19 files changed, 952 insertions(+), 126 deletions(-)

More information about ruminate at CRAN
Permanent link

Package broman updated to version 0.84 with previous version 0.82 dated 2024-05-05

Title: Karl Broman's R Code
Description: Miscellaneous R functions, including functions related to graphics (mostly for base graphics), permutation tests, running mean/median, and general utilities.
Author: Karl W Broman [aut, cre] , Aimee Teo Broman [ctb]
Maintainer: Karl W Broman <broman@wisc.edu>

Diff between broman versions 0.82 dated 2024-05-05 and 0.84 dated 2024-05-18

 DESCRIPTION           |    8 ++---
 MD5                   |   26 +++++++++---------
 NAMESPACE             |    1 
 NEWS.md               |   11 +++++++
 R/dotplot.R           |    2 -
 R/grayplot.R          |    2 -
 R/runningmean.R       |   27 +++++++++++++++----
 R/strwidth2lines.R    |    2 -
 R/time_axis.R         |   71 +++++++++++++++++++++++++++++++++++++++++++-------
 R/timeplot.R          |only
 man/dotplot.Rd        |    2 -
 man/grayplot.Rd       |    2 -
 man/strwidth2lines.Rd |    2 -
 man/time_axis.Rd      |   38 ++++++++++++++++++++++++++
 man/timeplot.Rd       |only
 15 files changed, 157 insertions(+), 37 deletions(-)

More information about broman at CRAN
Permanent link

Package unitizer updated to version 1.4.21 with previous version 1.4.20 dated 2023-10-08

Title: Interactive R Unit Tests
Description: Simplifies regression tests by comparing objects produced by test code with earlier versions of those same objects. If objects are unchanged the tests pass, otherwise execution stops with error details. If in interactive mode, tests can be reviewed through the provided interactive environment.
Author: Brodie Gaslam [aut, cre], R Core Team [cph]
Maintainer: Brodie Gaslam <brodie.gaslam@yahoo.com>

Diff between unitizer versions 1.4.20 dated 2023-10-08 and 1.4.21 dated 2024-05-18

 DESCRIPTION                  |    6 ++---
 MD5                          |   11 +++++----
 NEWS.md                      |    4 +++
 inst/doc/u1_intro.html       |   32 +++++++++++++--------------
 tests/not-cran.R             |only
 tests/t-repairenvs.R         |   26 ++++++++++++----------
 tests/t-repairenvs.Rout.save |   50 ++++++++++++++++---------------------------
 7 files changed, 63 insertions(+), 66 deletions(-)

More information about unitizer at CRAN
Permanent link

Package ggeffects updated to version 1.6.0 with previous version 1.5.2 dated 2024-04-15

Title: Create Tidy Data Frames of Marginal Effects for 'ggplot' from Model Outputs
Description: Compute marginal effects and adjusted predictions from statistical models and returns the result as tidy data frames. These data frames are ready to use with the 'ggplot2'-package. Effects and predictions can be calculated for many different models. Interaction terms, splines and polynomial terms are also supported. The main functions are ggpredict(), ggemmeans() and ggeffect(). There is a generic plot()-method to plot the results using 'ggplot2'.
Author: Daniel Luedecke [aut, cre] , Frederik Aust [ctb] , Sam Crawley [ctb] , Mattan S. Ben-Shachar [ctb] , Sean C. Anderson [ctb]
Maintainer: Daniel Luedecke <d.luedecke@uke.de>

Diff between ggeffects versions 1.5.2 dated 2024-04-15 and 1.6.0 dated 2024-05-18

 DESCRIPTION                                             |   17 
 MD5                                                     |  168 +-
 NEWS.md                                                 |   71 +
 R/collapse_re_data.R                                    |    2 
 R/emmeans_prediction_data.R                             |   18 
 R/format.R                                              |  127 ++
 R/get_predictions_MCMCglmm.R                            |    2 
 R/get_predictions_MixMod.R                              |   34 
 R/get_predictions_clm2.R                                |   82 -
 R/get_predictions_clmm.R                                |    2 
 R/get_predictions_gee.R                                 |    2 
 R/get_predictions_glmmTMB.R                             |    2 
 R/get_predictions_mlogit.R                              |    2 
 R/get_predictions_rqs.R                                 |    2 
 R/get_predictions_sdmTMB.R                              |    2 
 R/get_predictions_stan.R                                |   44 
 R/get_predictions_wbm.R                                 |   28 
 R/get_predictions_zeroinfl.R                            |    6 
 R/ggaverage.R                                           |    7 
 R/ggeffect.R                                            |  155 +-
 R/ggemmeans.R                                           |   10 
 R/ggpredict.R                                           |  219 ---
 R/johnson_neyman.R                                      |    2 
 R/new_data.R                                            |    7 
 R/plot.R                                                |  224 +++
 R/post_processing_predictions.R                         |    2 
 R/predict_response.R                                    |  131 +-
 R/predict_zero_inflation.R                              |    2 
 R/predictions.R                                         |    7 
 R/print.R                                               |  353 ++++++
 R/simulate_predictions.R                                |    8 
 R/standard_error_predictions.R                          |    7 
 R/test_predictions.R                                    |  930 ++++++----------
 R/test_predictions_emmeans.R                            |  120 +-
 R/test_predictions_ggeffects.R                          |only
 R/utils.R                                               |    8 
 R/utils_get_data_grid.R                                 |    9 
 R/utils_ggpredict.R                                     |   60 +
 R/utils_set_attr.R                                      |   10 
 R/vcov.R                                                |   34 
 README.md                                               |   34 
 build/vignette.rds                                      |binary
 inst/doc/content.Rmd                                    |   10 
 inst/doc/content.html                                   |   14 
 man/figures/callout.css                                 |only
 man/figures/list-check-solid.png                        |only
 man/figures/summary.png                                 |only
 man/ggpredict.Rd                                        |   77 -
 man/plot.Rd                                             |   11 
 man/predict_response.Rd                                 |  103 -
 man/print.Rd                                            |   29 
 man/test_predictions.Rd                                 |  195 ++-
 man/vcov.Rd                                             |    3 
 tests/testthat/_snaps/backtransform_response            |only
 tests/testthat/_snaps/clm.md                            |only
 tests/testthat/_snaps/clm2.md                           |only
 tests/testthat/_snaps/plot                              |only
 tests/testthat/_snaps/plot-ordinal-latent               |only
 tests/testthat/_snaps/plot-ordinal-latent.md            |only
 tests/testthat/_snaps/print_test_predictions-ordinal.md |  460 +++----
 tests/testthat/_snaps/test_predictions_emmeans.md       |  774 ++++++-------
 tests/testthat/_snaps/test_predictions_ggeffects.md     |only
 tests/testthat/test-MCMCglmm.R                          |    4 
 tests/testthat/test-backtransform_response.R            |   45 
 tests/testthat/test-brms-ppd.R                          |   17 
 tests/testthat/test-brms-trial.R                        |    2 
 tests/testthat/test-clm.R                               |    4 
 tests/testthat/test-clm2.R                              |    7 
 tests/testthat/test-focal_only_random.R                 |only
 tests/testthat/test-gamm4.R                             |    3 
 tests/testthat/test-glmmTMB.R                           |   20 
 tests/testthat/test-interval_re.R                       |    4 
 tests/testthat/test-ordinal.R                           |    8 
 tests/testthat/test-plot-ordinal-latent.R               |only
 tests/testthat/test-plot.R                              |   87 +
 tests/testthat/test-pool_predictions.R                  |    2 
 tests/testthat/test-print_subsets.R                     |    1 
 tests/testthat/test-rstanarm-ppd.R                      |   15 
 tests/testthat/test-rstanarm.R                          |   65 -
 tests/testthat/test-splines.R                           |only
 tests/testthat/test-test_predictions.R                  |   65 -
 tests/testthat/test-test_predictions_emmeans.R          |   53 
 tests/testthat/test-test_predictions_ggeffects.R        |only
 vignettes/content.Rmd                                   |   10 
 84 files changed, 3057 insertions(+), 1981 deletions(-)

More information about ggeffects at CRAN
Permanent link

Package WorldFlora updated to version 1.14-3 with previous version 1.14-2 dated 2024-03-13

Title: Standardize Plant Names According to World Flora Online Taxonomic Backbone
Description: World Flora Online is an online flora of all known plants, available from <https://www.worldfloraonline.org/>. Methods are provided of matching a list of plant names (scientific names, taxonomic names, botanical names) against a static copy of the World Flora Online Taxonomic Backbone data that can be downloaded from the World Flora Online website. The World Flora Online Taxonomic Backbone is an updated version of The Plant List (<http://www.theplantlist.org/>), a working list of plant names that has become static since 2013.
Author: Roeland Kindt [cre, aut]
Maintainer: Roeland Kindt <RoelandCEKindt@gmail.com>

Diff between WorldFlora versions 1.14-2 dated 2024-03-13 and 1.14-3 dated 2024-05-18

 DESCRIPTION     |    8 ++++----
 MD5             |    6 +++---
 R/WFO.prepare.R |   14 +++++++-------
 inst/ChangeLog  |   10 ++++++++--
 4 files changed, 22 insertions(+), 16 deletions(-)

More information about WorldFlora at CRAN
Permanent link

Package HGNChelper updated to version 0.8.14 with previous version 0.8.1 dated 2019-10-24

Title: Identify and Correct Invalid HGNC Human Gene Symbols and MGI Mouse Gene Symbols
Description: Contains functions for identifying and correcting HGNC human gene symbols and MGI mouse gene symbols which have been converted to date format by Excel, withdrawn, or aliased. Also contains functions for reversibly converting between HGNC symbols and valid R names.
Author: Sehyun Oh [aut], Ayush Aggarwal [aut], Markus Riester [aut], Levi Waldron [aut, cre]
Maintainer: Levi Waldron <lwaldron.research@gmail.com>

Diff between HGNChelper versions 0.8.1 dated 2019-10-24 and 0.8.14 dated 2024-05-18

 HGNChelper-0.8.1/HGNChelper/build/HGNChelper.pdf                    |only
 HGNChelper-0.8.1/HGNChelper/data/datalist                           |only
 HGNChelper-0.8.1/HGNChelper/inst/extdata/valid_vs_year.R            |only
 HGNChelper-0.8.1/HGNChelper/vignettes/header.html                   |only
 HGNChelper-0.8.14/HGNChelper/DESCRIPTION                            |   27 
 HGNChelper-0.8.14/HGNChelper/MD5                                    |   51 
 HGNChelper-0.8.14/HGNChelper/NAMESPACE                              |    2 
 HGNChelper-0.8.14/HGNChelper/NEWS                                   |    4 
 HGNChelper-0.8.14/HGNChelper/R/HGNChelper-package.R                 |only
 HGNChelper-0.8.14/HGNChelper/R/checkGeneSymbols.R                   |  234 +++-
 HGNChelper-0.8.14/HGNChelper/R/data.R                               |   33 
 HGNChelper-0.8.14/HGNChelper/R/findExcelGeneSymbols.R               |    2 
 HGNChelper-0.8.14/HGNChelper/R/getCurrentMaps.R                     |   66 -
 HGNChelper-0.8.14/HGNChelper/R/zzz.R                                |only
 HGNChelper-0.8.14/HGNChelper/build/vignette.rds                     |binary
 HGNChelper-0.8.14/HGNChelper/data/hgnc.table.rda                    |binary
 HGNChelper-0.8.14/HGNChelper/data/mouse.table.rda                   |binary
 HGNChelper-0.8.14/HGNChelper/inst/CITATION                          |only
 HGNChelper-0.8.14/HGNChelper/inst/doc/index.R                       |   19 
 HGNChelper-0.8.14/HGNChelper/inst/doc/index.Rmd                     |   33 
 HGNChelper-0.8.14/HGNChelper/inst/doc/index.html                    |  516 ++++++++--
 HGNChelper-0.8.14/HGNChelper/inst/extdata/date_of_last_update.txt   |    2 
 HGNChelper-0.8.14/HGNChelper/man/HGNChelper-package.Rd              |   48 
 HGNChelper-0.8.14/HGNChelper/man/checkGeneSymbols.Rd                |   99 +
 HGNChelper-0.8.14/HGNChelper/man/findExcelGeneSymbols.Rd            |    9 
 HGNChelper-0.8.14/HGNChelper/man/getCurrentMaps.Rd                  |   15 
 HGNChelper-0.8.14/HGNChelper/man/hgnc.table.Rd                      |   26 
 HGNChelper-0.8.14/HGNChelper/man/mouse.table.Rd                     |   19 
 HGNChelper-0.8.14/HGNChelper/tests/testthat/test_checkGeneSymbols.R |   96 +
 HGNChelper-0.8.14/HGNChelper/vignettes/index.Rmd                    |   33 
 30 files changed, 965 insertions(+), 369 deletions(-)

More information about HGNChelper at CRAN
Permanent link

Package bbnet updated to version 1.0.1 with previous version 1.0 dated 2024-05-17

Title: Create Simple Predictive Models on Bayesian Belief Networks
Description: A system to build, visualise and evaluate Bayesian belief networks. The methods are described in Stafford et al. (2015) <doi:10.12688/f1000research.5981.1>.
Author: Victoria Dominguez Almela [cre, aut] , Richard Stafford [cph, aut]
Maintainer: Victoria Dominguez Almela <vda1r22@soton.ac.uk>

Diff between bbnet versions 1.0 dated 2024-05-17 and 1.0.1 dated 2024-05-18

 DESCRIPTION                               |   20 +--
 MD5                                       |   20 +--
 NEWS.md                                   |   12 +-
 README.md                                 |   75 ++++++++-----
 inst/doc/bbnet.R                          |    2 
 inst/doc/bbnet.Rmd                        |    2 
 inst/doc/bbnet.html                       |  171 +++++++-----------------------
 man/figures/README-unnamed-chunk-10-3.png |binary
 man/figures/README-unnamed-chunk-5-1.png  |binary
 man/figures/README-unnamed-chunk-8-1.png  |binary
 vignettes/bbnet.Rmd                       |    2 
 11 files changed, 123 insertions(+), 181 deletions(-)

More information about bbnet at CRAN
Permanent link

Package TestAnaAPP updated to version 1.0.1 with previous version 0.1.8 dated 2024-02-08

Title: A 'shiny' App for Test Analysis and Visualization
Description: This application provides exploratory and confirmatory factor analysis, classical test theory, unidimensional and multidimensional item response theory, and continuous item response model analysis, through the 'shiny' interactive interface. In addition, it offers rich functionalities for visualizing and downloading results. Users can download figures, tables, and analysis reports via the interactive interface.
Author: Youxiang Jiang [cre, aut, ths] , Qing Zeng [aut, ths], Hongbo Wen [aut, ths]
Maintainer: Youxiang Jiang <jiangyouxiang34@163.com>

Diff between TestAnaAPP versions 0.1.8 dated 2024-02-08 and 1.0.1 dated 2024-05-18

 DESCRIPTION                       |   24 +-
 MD5                               |   12 -
 NAMESPACE                         |    4 
 R/server.R                        |  375 ++++++++++++++++++++++++++++++--------
 R/ui.R                            |  266 +++++++++++++++++++++-----
 inst/rmd/IRT_Analysis_Report.Rmd  |   49 +++-
 inst/rmd/MIRT_Analysis_Report.Rmd |   41 +++-
 7 files changed, 597 insertions(+), 174 deletions(-)

More information about TestAnaAPP at CRAN
Permanent link

Package bayesMeanScale updated to version 0.1.2 with previous version 0.1.1 dated 2024-04-27

Title: Bayesian Post-Estimation on the Mean Scale
Description: Computes Bayesian posterior distributions of predictions, marginal effects, and differences of marginal effects for various generalized linear models. Importantly, the posteriors are on the mean (response) scale, allowing for more natural interpretation than summaries on the link scale. Also, predictions and marginal effects of the count probabilities for Poisson and negative binomial models can be computed.
Author: David M. Dalenberg [aut, cre]
Maintainer: David M. Dalenberg <dalenbe2@gmail.com>

Diff between bayesMeanScale versions 0.1.1 dated 2024-04-27 and 0.1.2 dated 2024-05-18

 DESCRIPTION                                         |    8 
 MD5                                                 |   54 +++---
 NEWS.md                                             |    7 
 R/bayes-count-preds.R                               |    5 
 R/bayes-preds.R                                     |    5 
 R/marg-model-data.R                                 |    5 
 R/sysdata.rda                                       |binary
 build/vignette.rds                                  |binary
 inst/doc/introduction.html                          |  172 ++++++++++----------
 man/bayesCountMargEffF.Rd                           |    4 
 man/bayesCountPredsF.Rd                             |    4 
 man/bayesMargCompareF.Rd                            |    4 
 man/bayesMargEffF.Rd                                |    4 
 man/bayesPredsF.Rd                                  |    4 
 tests/testthat/test-bayes-count-marg-effects.R      |    8 
 tests/testthat/test-bayes-count-preds.R             |    8 
 tests/testthat/test-bayes-preds.R                   |    8 
 tests/testthat/test-count-marg-effect-error-check.R |    4 
 tests/testthat/test-count-preds-error-check.R       |    4 
 tests/testthat/test-data-check.R                    |   30 +--
 tests/testthat/test-levels-prep.R                   |    5 
 tests/testthat/test-marg-compare-error-check.R      |   10 -
 tests/testthat/test-marg-compare.R                  |   23 +-
 tests/testthat/test-marg-effects-error-check.R      |   18 +-
 tests/testthat/test-marg-effects.R                  |   40 +++-
 tests/testthat/test-modify-formula.R                |   31 +--
 tests/testthat/test-new-value.R                     |    8 
 tests/testthat/test-preds-error-check.R             |   17 +
 28 files changed, 294 insertions(+), 196 deletions(-)

More information about bayesMeanScale at CRAN
Permanent link

Package fude updated to version 0.3.6 with previous version 0.3.5 dated 2023-10-07

Title: Utilities for Fude Polygon
Description: Provides utilities to facilitate handling of Fude Polygon data downloadable from the Ministry of Agriculture, Forestry and Fisheries website <https://open.fude.maff.go.jp>.
Author: Takeshi Nishimura [aut, cph, cre]
Maintainer: Takeshi Nishimura <takenishi@gmail.com>

Diff between fude versions 0.3.5 dated 2023-10-07 and 0.3.6 dated 2024-05-18

 DESCRIPTION                                        |   10 
 MD5                                                |   33 +-
 NEWS.md                                            |    4 
 R/bind_fude.R                                      |   15 -
 R/combine_fude.R                                   |   25 +
 R/extract_fude.R                                   |    1 
 R/get_boundary.R                                   |   10 
 R/read_fude.R                                      |   25 +
 R/rename_fude.R                                    |    8 
 README.md                                          |  291 +++++++++++++--------
 man/figures/README-facet_wrap_gogoshima-1.png      |binary
 man/figures/README-facet_wrap_gogoshima_hist-1.png |only
 man/figures/README-gogoshima-1.png                 |binary
 man/figures/README-matsuyama-1.png                 |only
 man/figures/README-nosplit_gogoshima-1.png         |binary
 man/figures/README-sample-1.png                    |only
 man/figures/README-yusukawa-1.png                  |binary
 man/read_fude.Rd                                   |    7 
 man/rename_fude.Rd                                 |    4 
 19 files changed, 291 insertions(+), 142 deletions(-)

More information about fude at CRAN
Permanent link

Package gbRd updated to version 0.4.12 with previous version 0.4-11 dated 2012-10-01

Title: Utilities for Processing Rd Objects and Files
Description: Provides utilities for processing Rd objects and files. Extract argument descriptions and other parts of the help pages of functions.
Author: Georgi N. Boshnakov [aut, cre], R Core Team [cph]
Maintainer: Georgi N. Boshnakov <georgi.boshnakov@manchester.ac.uk>

Diff between gbRd versions 0.4-11 dated 2012-10-01 and 0.4.12 dated 2024-05-18

 DESCRIPTION         |   27 +++++++++++-------
 MD5                 |   10 ++++--
 NAMESPACE           |   20 ++++++++++++-
 NEWS.md             |only
 R/Rdutils.R         |   78 +++++++++++++++++++++++++++++++++++++++++-----------
 README.md           |only
 man/gbRd-package.Rd |   42 ----------------------------
 7 files changed, 104 insertions(+), 73 deletions(-)

More information about gbRd at CRAN
Permanent link

Package CohortSurvival updated to version 0.5.1 with previous version 0.5.0 dated 2024-05-06

Title: Estimate Survival from Common Data Model Cohorts
Description: Estimate survival using data mapped to the Observational Medical Outcomes Partnership common data model. Survival can be estimated based on user-defined study cohorts.
Author: Edward Burn [aut, cre] , Kim Lopez [aut] , Marti Catala [ctb] , Xintong Li [ctb] , Danielle Newby [ctb]
Maintainer: Edward Burn <edward.burn@ndorms.ox.ac.uk>

Diff between CohortSurvival versions 0.5.0 dated 2024-05-06 and 0.5.1 dated 2024-05-18

 CohortSurvival-0.5.0/CohortSurvival/R/summariseSurvivalParticipants.R                   |only
 CohortSurvival-0.5.0/CohortSurvival/man/reexports.Rd                                    |only
 CohortSurvival-0.5.0/CohortSurvival/tests/testthat/test-summariseSurvivalParticipants.R |only
 CohortSurvival-0.5.1/CohortSurvival/DESCRIPTION                                         |    6 
 CohortSurvival-0.5.1/CohortSurvival/MD5                                                 |   13 
 CohortSurvival-0.5.1/CohortSurvival/NAMESPACE                                           |    2 
 CohortSurvival-0.5.1/CohortSurvival/inst/doc/a01_Single_event_of_interest.html          |  220 ++++-----
 CohortSurvival-0.5.1/CohortSurvival/inst/doc/a02_Competing_risk_survival.html           |  228 ++++------
 CohortSurvival-0.5.1/CohortSurvival/inst/doc/a03_Further_survival_analyses.html         |   30 -
 9 files changed, 245 insertions(+), 254 deletions(-)

More information about CohortSurvival at CRAN
Permanent link

Fri, 17 May 2024

Package nasapower updated to version 4.2.1 with previous version 4.2.0 dated 2024-02-02

Title: NASA POWER API Client
Description: An API client for NASA POWER global meteorology, surface solar energy and climatology data API. POWER (Prediction Of Worldwide Energy Resources) data are freely available for download with varying spatial resolutions dependent on the original data and with several temporal resolutions depending on the POWER parameter and community. This work is funded through the NASA Earth Science Directorate Applied Science Program. For more on the data themselves, the methodologies used in creating, a web- based data viewer and web access, please see <https://power.larc.nasa.gov/>.
Author: Adam H. Sparks [aut, cre] , Scott Chamberlain [rev] , Hazel Kavili [rev] , Alison Boyer [rev] , Fernando Miguez [ctb] , Maelle Salmon [ctb] , Phillip D. Alderman [ctb] ` must use `I` for literal data as of vroom 1.5.0.', see <https://github.com/ropen [...truncated...]
Maintainer: Adam H. Sparks <adamhsparks@gmail.com>

Diff between nasapower versions 4.2.0 dated 2024-02-02 and 4.2.1 dated 2024-05-17

 nasapower-4.2.0/nasapower/vignettes/precompile.R                   |only
 nasapower-4.2.1/nasapower/DESCRIPTION                              |  129 +++-------
 nasapower-4.2.1/nasapower/MD5                                      |   28 +-
 nasapower-4.2.1/nasapower/NEWS.md                                  |    6 
 nasapower-4.2.1/nasapower/R/get_power.R                            |    7 
 nasapower-4.2.1/nasapower/R/query_parameters.R                     |   31 +-
 nasapower-4.2.1/nasapower/README.md                                |   34 +-
 nasapower-4.2.1/nasapower/build/vignette.rds                       |binary
 nasapower-4.2.1/nasapower/inst/WORDLIST                            |    2 
 nasapower-4.2.1/nasapower/inst/doc/nasapower.Rmd                   |   37 +-
 nasapower-4.2.1/nasapower/inst/doc/nasapower.html                  |   29 +-
 nasapower-4.2.1/nasapower/man/nasapower-package.Rd                 |   31 +-
 nasapower-4.2.1/nasapower/man/query_parameters.Rd                  |   11 
 nasapower-4.2.1/nasapower/tests/testthat/test-internal_functions.R |    4 
 nasapower-4.2.1/nasapower/vignettes/!precompile.R                  |only
 nasapower-4.2.1/nasapower/vignettes/nasapower.Rmd                  |   37 +-
 16 files changed, 184 insertions(+), 202 deletions(-)

More information about nasapower at CRAN
Permanent link

Package formods updated to version 0.1.5 with previous version 0.1.4 dated 2024-04-03

Title: 'Shiny' Modules for General Tasks
Description: 'Shiny' apps can often make use of the same key elements, this package provides modules for common tasks (data upload, wrangling data, figure generation and saving the app state). These modules can react and interact as well as generate code to create reproducible analyses.
Author: John Harrold [aut, cre]
Maintainer: John Harrold <john.m.harrold@gmail.com>

Diff between formods versions 0.1.4 dated 2024-04-03 and 0.1.5 dated 2024-05-17

 DESCRIPTION                    |    6 -
 MD5                            |   30 +++----
 NEWS.md                        |   14 ++-
 R/ASM_Server.R                 |  106 ++++++++++++++++++++++++-
 R/DW_Server.R                  |    4 
 R/FG_Server.R                  |  173 ++++++++++++++++++++++-------------------
 R/formods.R                    |   73 ++++++++++++++---
 inst/doc/included_modules.html |    2 
 inst/doc/making_modules.Rmd    |    9 +-
 inst/doc/making_modules.html   |   81 +++++++++++++------
 inst/templates/ASM.yaml        |    7 +
 inst/templates/ZZ_Server.R     |   32 ++++++-
 inst/templates/formods.yaml    |   67 +++++++++++----
 inst/test_apps/FM_report.R     |    3 
 man/FM_generate_report.Rd      |    7 +
 vignettes/making_modules.Rmd   |    9 +-
 16 files changed, 455 insertions(+), 168 deletions(-)

More information about formods at CRAN
Permanent link

Package tinytable updated to version 0.3.0 with previous version 0.2.1 dated 2024-03-28

Title: Simple and Configurable Tables in 'HTML', 'LaTeX', 'Markdown', 'Word', 'PNG', 'PDF', and 'Typst' Formats
Description: Create highly customized tables with this simple and dependency-free package. Data frames can be converted to 'HTML', 'LaTeX', 'Markdown', 'Word', 'PNG', 'PDF', or 'Typst' tables. The user interface is minimalist and easy to learn. The syntax is concise. 'HTML' tables can be customized using the flexible 'Bootstrap' framework, and 'LaTeX' code with the 'tabularray' package.
Author: Vincent Arel-Bundock [aut, cre]
Maintainer: Vincent Arel-Bundock <vincent.arel-bundock@umontreal.ca>

Diff between tinytable versions 0.2.1 dated 2024-03-28 and 0.3.0 dated 2024-05-17

 tinytable-0.2.1/tinytable/man/rbind2-tinytable-ANY-method.Rd                                            |only
 tinytable-0.3.0/tinytable/DESCRIPTION                                                                   |   15 
 tinytable-0.3.0/tinytable/MD5                                                                           |  110 +++---
 tinytable-0.3.0/tinytable/NEWS.md                                                                       |   50 +++
 tinytable-0.3.0/tinytable/R/build_tt.R                                                                  |    6 
 tinytable-0.3.0/tinytable/R/escape.R                                                                    |   12 
 tinytable-0.3.0/tinytable/R/finalize_bootstrap.R                                                        |    6 
 tinytable-0.3.0/tinytable/R/finalize_typst.R                                                            |   19 +
 tinytable-0.3.0/tinytable/R/format_tt.R                                                                 |  123 +++++--
 tinytable-0.3.0/tinytable/R/group_tabularray.R                                                          |    2 
 tinytable-0.3.0/tinytable/R/group_typst.R                                                               |   28 +
 tinytable-0.3.0/tinytable/R/rbind2.R                                                                    |    4 
 tinytable-0.3.0/tinytable/R/sanity.R                                                                    |   22 +
 tinytable-0.3.0/tinytable/R/save_tt.R                                                                   |    8 
 tinytable-0.3.0/tinytable/R/style_bootstrap.R                                                           |    6 
 tinytable-0.3.0/tinytable/R/style_tabularray.R                                                          |    2 
 tinytable-0.3.0/tinytable/R/style_tt.R                                                                  |   41 +-
 tinytable-0.3.0/tinytable/R/style_typst.R                                                               |  165 +++++-----
 tinytable-0.3.0/tinytable/R/theme_tt.R                                                                  |   23 -
 tinytable-0.3.0/tinytable/R/tt.R                                                                        |   29 +
 tinytable-0.3.0/tinytable/R/tt_bootstrap.R                                                              |   24 +
 tinytable-0.3.0/tinytable/R/tt_tabularray.R                                                             |   50 ++-
 tinytable-0.3.0/tinytable/R/tt_typst.R                                                                  |   42 ++
 tinytable-0.3.0/tinytable/R/utils.R                                                                     |   30 +
 tinytable-0.3.0/tinytable/README.md                                                                     |   69 ++--
 tinytable-0.3.0/tinytable/build/partial.rdb                                                             |binary
 tinytable-0.3.0/tinytable/inst/templates/tabularray.tex                                                 |    1 
 tinytable-0.3.0/tinytable/inst/templates/typst.typ                                                      |   68 +++-
 tinytable-0.3.0/tinytable/inst/tinytest/_tinysnapshot/escape-issue150_caption_escape.txt                |    6 
 tinytable-0.3.0/tinytable/inst/tinytest/_tinysnapshot/escape-issue150_caption_escape_03.txt             |    2 
 tinytable-0.3.0/tinytable/inst/tinytest/_tinysnapshot/group_rows.txt                                    |   78 +++-
 tinytable-0.3.0/tinytable/inst/tinytest/_tinysnapshot/group_tt-3level_typ.txt                           |   88 +++--
 tinytable-0.3.0/tinytable/inst/tinytest/_tinysnapshot/latex-issue242.txt                                |only
 tinytable-0.3.0/tinytable/inst/tinytest/_tinysnapshot/tibble-markdown_pillar_num.txt                    |    6 
 tinytable-0.3.0/tinytable/inst/tinytest/_tinysnapshot/tibble-typst_pillar_num.txt                       |   75 +++-
 tinytable-0.3.0/tinytable/inst/tinytest/_tinysnapshot/typst-complicated.txt                             |  112 ++++--
 tinytable-0.3.0/tinytable/inst/tinytest/_tinysnapshot/typst-font_size.txt                               |   89 ++++-
 tinytable-0.3.0/tinytable/inst/tinytest/_tinysnapshot/typst-formatting.txt                              |   75 +++-
 tinytable-0.3.0/tinytable/inst/tinytest/_tinysnapshot/typst-grid.txt                                    |   72 +++-
 tinytable-0.3.0/tinytable/inst/tinytest/_tinysnapshot/typst-issue-139_misaligned_rule_with_group_tt.txt |  141 ++++++--
 tinytable-0.3.0/tinytable/inst/tinytest/_tinysnapshot/typst-italic_markdown.txt                         |   76 +++-
 tinytable-0.3.0/tinytable/inst/tinytest/_tinysnapshot/typst-missing_value_replacement.txt               |   75 +++-
 tinytable-0.3.0/tinytable/inst/tinytest/_tinysnapshot/typst-more_formatting.txt                         |   75 +++-
 tinytable-0.3.0/tinytable/inst/tinytest/_tinysnapshot/typst-no_headers.txt                              |   73 +++-
 tinytable-0.3.0/tinytable/inst/tinytest/_tinysnapshot/typst-significant_cell.txt                        |   75 +++-
 tinytable-0.3.0/tinytable/inst/tinytest/_tinysnapshot/typst-striped.txt                                 |   97 ++++-
 tinytable-0.3.0/tinytable/inst/tinytest/test-format_tt.R                                                |   39 ++
 tinytable-0.3.0/tinytable/inst/tinytest/test-html.R                                                     |    2 
 tinytable-0.3.0/tinytable/inst/tinytest/test-latex.R                                                    |    8 
 tinytable-0.3.0/tinytable/inst/tinytest/test-markdown.R                                                 |    2 
 tinytable-0.3.0/tinytable/inst/tinytest/test-tibble.R                                                   |    9 
 tinytable-0.3.0/tinytable/inst/tinytest/test-typst.R                                                    |   55 +--
 tinytable-0.3.0/tinytable/inst/tinytest/test-width.R                                                    |only
 tinytable-0.3.0/tinytable/man/format_tt.Rd                                                              |   53 ++-
 tinytable-0.3.0/tinytable/man/initialize-tinytable-method.Rd                                            |    8 
 tinytable-0.3.0/tinytable/man/rbind2-tinytable-tinytable-method.Rd                                      |only
 tinytable-0.3.0/tinytable/man/style_tt.Rd                                                               |    3 
 tinytable-0.3.0/tinytable/man/tt.Rd                                                                     |   27 +
 58 files changed, 1687 insertions(+), 689 deletions(-)

More information about tinytable at CRAN
Permanent link

Package fastbeta updated to version 0.3.0 with previous version 0.2.0 dated 2023-12-11

Title: Fast Approximation of Time-Varying Infectious Disease Transmission Rates
Description: A fast method for approximating time-varying infectious disease transmission rates from disease incidence time series and other data, based on a discrete time approximation of an SEIR model, as analyzed in Jagan et al. (2020) <doi:10.1371/journal.pcbi.1008124>.
Author: Mikael Jagan [aut, cre]
Maintainer: Mikael Jagan <jaganmn@mcmaster.ca>

Diff between fastbeta versions 0.2.0 dated 2023-12-11 and 0.3.0 dated 2024-05-17

 fastbeta-0.2.0/fastbeta/R/sir.R                   |only
 fastbeta-0.2.0/fastbeta/data/sir.e01.R            |only
 fastbeta-0.2.0/fastbeta/data/sir.e02.R            |only
 fastbeta-0.2.0/fastbeta/man/sir.Rd                |only
 fastbeta-0.2.0/fastbeta/man/sir.library.Rd        |only
 fastbeta-0.2.0/fastbeta/src/sir.c                 |only
 fastbeta-0.2.0/fastbeta/tests/sir.R               |only
 fastbeta-0.3.0/fastbeta/DESCRIPTION               |   25 -
 fastbeta-0.3.0/fastbeta/MD5                       |   53 +--
 fastbeta-0.3.0/fastbeta/NAMESPACE                 |    7 
 fastbeta-0.3.0/fastbeta/R/deconvolve.R            |   36 --
 fastbeta-0.3.0/fastbeta/R/fastbeta.R              |   37 +-
 fastbeta-0.3.0/fastbeta/R/fastbeta.affine.R       |only
 fastbeta-0.3.0/fastbeta/R/fastbeta.bootstrap.R    |   91 +++--
 fastbeta-0.3.0/fastbeta/R/ptpi.R                  |   92 ++---
 fastbeta-0.3.0/fastbeta/R/seir.R                  |only
 fastbeta-0.3.0/fastbeta/build/partial.rdb         |binary
 fastbeta-0.3.0/fastbeta/data/datalist             |    4 
 fastbeta-0.3.0/fastbeta/data/seir.ts01.R          |only
 fastbeta-0.3.0/fastbeta/data/seir.ts02.R          |only
 fastbeta-0.3.0/fastbeta/inst/NEWS.Rd              |  124 +++++--
 fastbeta-0.3.0/fastbeta/man/deconvolve.Rd         |   76 ++--
 fastbeta-0.3.0/fastbeta/man/fastbeta.Rd           |  216 ++++++++----
 fastbeta-0.3.0/fastbeta/man/fastbeta.bootstrap.Rd |   76 ++--
 fastbeta-0.3.0/fastbeta/man/ptpi.Rd               |  180 ++++++----
 fastbeta-0.3.0/fastbeta/man/seir.Rd               |only
 fastbeta-0.3.0/fastbeta/man/seir.library.Rd       |only
 fastbeta-0.3.0/fastbeta/man/smallpox.Rd           |   36 +-
 fastbeta-0.3.0/fastbeta/src/fastbeta.c            |  112 ++++--
 fastbeta-0.3.0/fastbeta/src/init.c                |   47 +-
 fastbeta-0.3.0/fastbeta/src/ptpi.c                |  368 +++++++++++-----------
 fastbeta-0.3.0/fastbeta/src/seir.c                |only
 fastbeta-0.3.0/fastbeta/tests/fastbeta.R          |   42 +-
 fastbeta-0.3.0/fastbeta/tests/ptpi.R              |   85 ++---
 fastbeta-0.3.0/fastbeta/tests/seir.R              |only
 35 files changed, 989 insertions(+), 718 deletions(-)

More information about fastbeta at CRAN
Permanent link

Package traits updated to version 0.5.1 with previous version 0.5.0 dated 2020-08-27

Title: Species Trait Data from Around the Web
Description: Species trait data from many different sources, including sequence data from 'NCBI' (<https://www.ncbi.nlm.nih.gov/>), plant trait data from 'BETYdb', data from 'EOL' 'Traitbank', 'Birdlife' International, and more.
Author: David LeBauer [aut, cre] , Scott Chamberlain [aut] , Zachary Foster [aut], Ignasi Bartomeus [aut], Chris Black [aut], David Harris [aut], Rupert Collins [ctb]
Maintainer: David LeBauer <dlebauer@gmail.com>

Diff between traits versions 0.5.0 dated 2020-08-27 and 0.5.1 dated 2024-05-17

 DESCRIPTION                  |   20 -
 MD5                          |   26 -
 NEWS.md                      |    7 
 R/betydb.R                   |    2 
 R/traitbank.R                |   24 +
 R/traits-package.r           |    4 
 README.md                    |    6 
 build/vignette.rds           |binary
 inst/doc/betydb.html         |  182 +++++++------
 inst/doc/traits.html         |  590 ++++++++++++++++++++++---------------------
 man/betydb.Rd                |    2 
 man/traitbank.Rd             |   20 -
 man/traits-package.Rd        |   10 
 tests/testthat/test-betydb.R |    2 
 14 files changed, 488 insertions(+), 407 deletions(-)

More information about traits at CRAN
Permanent link

Package TCIU updated to version 1.2.6 with previous version 1.2.5 dated 2024-03-08

Title: Spacekime Analytics, Time Complexity and Inferential Uncertainty
Description: Provide the core functionality to transform longitudinal data to complex-time (kime) data using analytic and numerical techniques, visualize the original time-series and reconstructed kime-surfaces, perform model based (e.g., tensor-linear regression) and model-free classification and clustering methods in the book Dinov, ID and Velev, MV. (2021) "Data Science: Time Complexity, Inferential Uncertainty, and Spacekime Analytics", De Gruyter STEM Series, ISBN 978-3-11-069780-3. <https://www.degruyter.com/view/title/576646>. The package includes 18 core functions which can be separated into three groups. 1) draw longitudinal data, such as Functional magnetic resonance imaging(fMRI) time-series, and forecast or transform the time-series data. 2) simulate real-valued time-series data, e.g., fMRI time-courses, detect the activated areas, report the corresponding p-values, and visualize the p-values in the 3D brain space. 3) Laplace transform and kimesurface reconstructions of the fMRI d [...truncated...]
Author: Yongkai Qiu [aut], Zhe Yin [aut], Jinwen Cao [aut], Yupeng Zhang [aut], Yuyao Liu [aut], Rongqian Zhang [aut], Yueyang Shen [aut, cre], Rouben Rostamian [ctb], Ranjan Maitra [ctb], Daniel Rowe [ctb], Daniel Adrian [ctb] , Yunjie Guo [aut], Ivo Dinov [...truncated...]
Maintainer: Yueyang Shen <petersyy@umich.edu>

Diff between TCIU versions 1.2.5 dated 2024-03-08 and 1.2.6 dated 2024-05-17

 DESCRIPTION                       |   18 -
 MD5                               |   20 -
 NAMESPACE                         |    1 
 R/fmri_kimesurface.R              |  143 +++++++------
 build/vignette.rds                |binary
 inst/doc/tciu-LT-kimesurface.html |  412 ++++++++++++++++++--------------------
 inst/doc/tciu-fMRI-analytics.R    |    2 
 inst/doc/tciu-fMRI-analytics.Rmd  |    2 
 inst/doc/tciu-fMRI-analytics.html |  230 ++++++++++-----------
 man/fmri_kimesurface.Rd           |    3 
 vignettes/tciu-fMRI-analytics.Rmd |    2 
 11 files changed, 430 insertions(+), 403 deletions(-)

More information about TCIU at CRAN
Permanent link

Package sievePH updated to version 1.1 with previous version 1.0.4 dated 2023-02-03

Title: Sieve Analysis Methods for Proportional Hazards Models
Description: Implements a suite of semiparametric and nonparametric kernel-smoothed estimation and testing procedures for continuous mark-specific stratified hazard ratio (treatment/placebo) models in a randomized treatment efficacy trial with a time-to-event endpoint. Semiparametric methods, allowing multivariate marks, are described in Juraska M and Gilbert PB (2013), Mark-specific hazard ratio model with multivariate continuous marks: an application to vaccine efficacy. Biometrics 69(2):328-337 <doi:10.1111/biom.12016>, and in Juraska M and Gilbert PB (2016), Mark-specific hazard ratio model with missing multivariate marks. Lifetime Data Analysis 22(4):606-25 <doi:10.1007/s10985-015-9353-9>. Nonparametric kernel-smoothed methods, allowing univariate marks only, are described in Sun Y and Gilbert PB (2012), Estimation of stratified mark‐specific proportional hazards models with missing marks. Scandinavian Journal of Statistics}, 39(1):34-52 <doi:10.1111/j.1467-9469.2011.00746.x> [...truncated...]
Author: Michal Juraska [aut, cre], Li Li [ctb], Stephanie Wu [ctb]
Maintainer: Michal Juraska <mjuraska@fredhutch.org>

Diff between sievePH versions 1.0.4 dated 2023-02-03 and 1.1 dated 2024-05-17

 DESCRIPTION                   |   23 +--
 MD5                           |   35 +++--
 NAMESPACE                     |    7 +
 NEWS                          |binary
 R/RcppExports.R               |only
 R/ggplot_sieve.R              |   24 ++-
 R/kernel_sievePH.R            |only
 R/kernel_sievePHaipw.R        |only
 R/plot.summary.sievePH.R      |    6 
 R/summary.kernel_sievePH.R    |only
 R/summary.sievePH.R           |    2 
 R/testDensRatioGOF.R          |    4 
 README.md                     |   12 +
 man/ggplot_sieve.Rd           |  270 +++++++++++++++++++++---------------------
 man/kernel_sievePH.Rd         |only
 man/kernel_sievePHaipw.Rd     |only
 man/plot.summary.sievePH.Rd   |  176 +++++++++++++--------------
 man/summary.kernel_sievePH.Rd |only
 man/summary.sievePH.Rd        |  192 ++++++++++++++---------------
 man/testDensRatioGOF.Rd       |    4 
 src                           |only
 21 files changed, 398 insertions(+), 357 deletions(-)

More information about sievePH at CRAN
Permanent link

Package inldata updated to version 1.2.1 with previous version 1.1.5 dated 2024-04-15

Title: Collection of Datasets for the USGS-INL Monitoring Networks
Description: A collection of analysis-ready datasets for the U.S. Geological Survey - Idaho National Laboratory (USGS-INL) groundwater and surface-water monitoring networks, administered by the USGS-INL Project Office in cooperation with the U.S. Department of Energy. The data collected from wells and surface-water stations at the Idaho National Laboratory and surrounding areas have been used to describe the effects of waste disposal on water contained in the eastern Snake River Plain aquifer, located in the southeastern part of Idaho, and the availability of water for long-term consumptive and industrial use. The package includes long-term monitoring records dating back to measurements from 1922. Geospatial data describing the areas from which samples were collected or observations were made are also included in the package. Bundling this data into a single package significantly reduces the magnitude of data processing for researchers and provides a way to distribute the data along with its docume [...truncated...]
Author: Jason C. Fisher [aut, cre] , Allison R. Trcka [aut] , Kerri C. Treinen [aut]
Maintainer: Jason C. Fisher <jfisher@usgs.gov>

Diff between inldata versions 1.1.5 dated 2024-04-15 and 1.2.1 dated 2024-05-17

 inldata-1.1.5/inldata/build/inldata.pdf                  |only
 inldata-1.1.5/inldata/build/stage23.rdb                  |only
 inldata-1.1.5/inldata/man/round_usgs.Rd                  |only
 inldata-1.2.1/inldata/DESCRIPTION                        |   16 
 inldata-1.2.1/inldata/MD5                                |  133 -
 inldata-1.2.1/inldata/NAMESPACE                          |   10 
 inldata-1.2.1/inldata/NEWS.md                            |   18 
 inldata-1.2.1/inldata/R/assert_url.R                     |   10 
 inldata-1.2.1/inldata/R/background.R                     |    6 
 inldata-1.2.1/inldata/R/benchmarks.R                     |    6 
 inldata-1.2.1/inldata/R/clean_sf.R                       |only
 inldata-1.2.1/inldata/R/dem.R                            |    4 
 inldata-1.2.1/inldata/R/dl.R                             |    8 
 inldata-1.2.1/inldata/R/download_file.R                  |only
 inldata-1.2.1/inldata/R/get_cache_dir.R                  |   27 
 inldata-1.2.1/inldata/R/make_data_release.R              |   48 
 inldata-1.2.1/inldata/R/make_datasets.R                  | 1254 +++++++--------
 inldata-1.2.1/inldata/R/make_dm.R                        |   48 
 inldata-1.2.1/inldata/R/parameters.R                     |    2 
 inldata-1.2.1/inldata/R/parse_rd_db.R                    |   19 
 inldata-1.2.1/inldata/R/percponds.R                      |   12 
 inldata-1.2.1/inldata/R/read_rdb.R                       |only
 inldata-1.2.1/inldata/R/samples.R                        |    4 
 inldata-1.2.1/inldata/R/units.R                          |   10 
 inldata-1.2.1/inldata/R/utils.R                          |  213 ++
 inldata-1.2.1/inldata/R/write_datasets.R                 |  111 -
 inldata-1.2.1/inldata/README.md                          |   12 
 inldata-1.2.1/inldata/build/partial.rdb                  |only
 inldata-1.2.1/inldata/data/background.rda                |binary
 inldata-1.2.1/inldata/data/benchmarks.rda                |binary
 inldata-1.2.1/inldata/data/cities.rda                    |binary
 inldata-1.2.1/inldata/data/counties.rda                  |binary
 inldata-1.2.1/inldata/data/crs.rda                       |binary
 inldata-1.2.1/inldata/data/dem.rda                       |binary
 inldata-1.2.1/inldata/data/dl.rda                        |binary
 inldata-1.2.1/inldata/data/esrp.rda                      |binary
 inldata-1.2.1/inldata/data/facilities.rda                |binary
 inldata-1.2.1/inldata/data/gwl.rda                       |binary
 inldata-1.2.1/inldata/data/idaho.rda                     |binary
 inldata-1.2.1/inldata/data/inl.rda                       |binary
 inldata-1.2.1/inldata/data/iwd.rda                       |binary
 inldata-1.2.1/inldata/data/lakes.rda                     |binary
 inldata-1.2.1/inldata/data/parameters.rda                |binary
 inldata-1.2.1/inldata/data/percponds.rda                 |binary
 inldata-1.2.1/inldata/data/roads.rda                     |binary
 inldata-1.2.1/inldata/data/samples.rda                   |binary
 inldata-1.2.1/inldata/data/sites.rda                     |binary
 inldata-1.2.1/inldata/data/streams.rda                   |binary
 inldata-1.2.1/inldata/data/swm.rda                       |binary
 inldata-1.2.1/inldata/data/units.rda                     |binary
 inldata-1.2.1/inldata/inst/extdata/test.rdb              |only
 inldata-1.2.1/inldata/inst/extdata/test.zip              |only
 inldata-1.2.1/inldata/inst/tinytest/test_functions.R     |   16 
 inldata-1.2.1/inldata/inst/tinytest/test_make_datasets.R |only
 inldata-1.2.1/inldata/man/as_posix_ct.Rd                 |only
 inldata-1.2.1/inldata/man/background.Rd                  |    6 
 inldata-1.2.1/inldata/man/benchmarks.Rd                  |    6 
 inldata-1.2.1/inldata/man/clean_sf.Rd                    |only
 inldata-1.2.1/inldata/man/dem.Rd                         |    4 
 inldata-1.2.1/inldata/man/dl.Rd                          |    8 
 inldata-1.2.1/inldata/man/download_file.Rd               |only
 inldata-1.2.1/inldata/man/extract_archive.Rd             |only
 inldata-1.2.1/inldata/man/figures/erd.svg                |  752 ++++----
 inldata-1.2.1/inldata/man/get_cache_dir.Rd               |    2 
 inldata-1.2.1/inldata/man/get_file_ext.Rd                |only
 inldata-1.2.1/inldata/man/inldata-package.Rd             |    2 
 inldata-1.2.1/inldata/man/make_data_release.Rd           |    8 
 inldata-1.2.1/inldata/man/make_datasets.Rd               |   14 
 inldata-1.2.1/inldata/man/parameters.Rd                  |    2 
 inldata-1.2.1/inldata/man/percponds.Rd                   |   12 
 inldata-1.2.1/inldata/man/read_rdb.Rd                    |only
 inldata-1.2.1/inldata/man/round_numbers.Rd               |only
 inldata-1.2.1/inldata/man/samples.Rd                     |    4 
 inldata-1.2.1/inldata/man/test_pkg_dir.Rd                |only
 inldata-1.2.1/inldata/man/units.Rd                       |   10 
 inldata-1.2.1/inldata/man/write_datasets.Rd              |   14 
 inldata-1.2.1/inldata/man/write_lines.Rd                 |only
 77 files changed, 1595 insertions(+), 1236 deletions(-)

More information about inldata at CRAN
Permanent link

Package evinf updated to version 0.8.10 with previous version 0.8.9 dated 2024-05-16

Title: Inference with Extreme Value Inflated Count Data
Description: Allows users to model and draw inferences from extreme value inflated count data, and to evaluate these models and compare to non extreme-value inflated counterparts. The package is built to be compatible with standard presentation tools such as 'broom', 'tidy', and 'modelsummary'.
Author: David Randahl [cre, aut], Johan Vegelius [aut]
Maintainer: David Randahl <david.randahl@pcr.uu.se>

Diff between evinf versions 0.8.9 dated 2024-05-16 and 0.8.10 dated 2024-05-17

 DESCRIPTION       |    6 +++---
 MD5               |    4 ++--
 build/partial.rdb |binary
 3 files changed, 5 insertions(+), 5 deletions(-)

More information about evinf at CRAN
Permanent link

Package ggseqplot updated to version 0.8.4 with previous version 0.8.3 dated 2023-09-22

Title: Render Sequence Plots using 'ggplot2'
Description: A set of wrapper functions that mainly re-produces most of the sequence plots rendered with TraMineR::seqplot(). Whereas 'TraMineR' uses base R to produce the plots this library draws on 'ggplot2'. The plots are produced on the basis of a sequence object defined with TraMineR::seqdef(). The package automates the reshaping and plotting of sequence data. Resulting plots are of class 'ggplot', i.e. components can be added and tweaked using '+' and regular 'ggplot2' functions.
Author: Marcel Raab [aut, cre]
Maintainer: Marcel Raab <marcel.raab@gmail.com>

Diff between ggseqplot versions 0.8.3 dated 2023-09-22 and 0.8.4 dated 2024-05-17

 DESCRIPTION             |   14 
 MD5                     |   26 -
 NEWS.md                 |    6 
 R/ggseqdplot.R          |   13 
 R/ggseqeplot.R          |    7 
 R/ggseqfplot.R          |    6 
 R/ggseqiplot.R          |   11 
 R/ggseqmsplot.R         |   13 
 R/ggseqmtplot.R         |    9 
 R/ggseqrplot.R          |  756 ++++++++++++++++++++++++------------------------
 R/ggseqtrplot.R         |    6 
 build/partial.rdb       |binary
 build/vignette.rds      |binary
 inst/doc/ggseqplot.html |   37 +-
 14 files changed, 484 insertions(+), 420 deletions(-)

More information about ggseqplot at CRAN
Permanent link

Package iGraphMatch updated to version 2.0.5 with previous version 2.0.4 dated 2024-02-13

Title: Tools for Graph Matching
Description: Versatile tools and data for graph matching analysis with various forms of prior information that supports working with 'igraph' objects, matrix objects, or lists of either.
Author: Daniel Sussman [aut, cre], Zihuan Qiao [aut], Joshua Agterberg [ctb], Lujia Wang [ctb], Vince Lyzinski [ctb]
Maintainer: Daniel Sussman <sussman@bu.edu>

Diff between iGraphMatch versions 2.0.4 dated 2024-02-13 and 2.0.5 dated 2024-05-17

 iGraphMatch-2.0.4/iGraphMatch/tests/testthat/_snaps/splr_matrix_class.md |only
 iGraphMatch-2.0.5/iGraphMatch/DESCRIPTION                                |   12 
 iGraphMatch-2.0.5/iGraphMatch/MD5                                        |   45 +-
 iGraphMatch-2.0.5/iGraphMatch/NAMESPACE                                  |    3 
 iGraphMatch-2.0.5/iGraphMatch/NEWS.md                                    |    6 
 iGraphMatch-2.0.5/iGraphMatch/R/check_graphs.R                           |   10 
 iGraphMatch-2.0.5/iGraphMatch/R/gm.R                                     |   26 +
 iGraphMatch-2.0.5/iGraphMatch/R/graph_match_class.R                      |    6 
 iGraphMatch-2.0.5/iGraphMatch/R/init_start.R                             |    2 
 iGraphMatch-2.0.5/iGraphMatch/R/match_report.R                           |    6 
 iGraphMatch-2.0.5/iGraphMatch/R/sample_gnp.R                             |    2 
 iGraphMatch-2.0.5/iGraphMatch/R/sample_ieg.R                             |    2 
 iGraphMatch-2.0.5/iGraphMatch/R/split_igraph.R                           |    4 
 iGraphMatch-2.0.5/iGraphMatch/R/splr_matrix_class.R                      |    8 
 iGraphMatch-2.0.5/iGraphMatch/R/start.R                                  |    4 
 iGraphMatch-2.0.5/iGraphMatch/build/vignette.rds                         |binary
 iGraphMatch-2.0.5/iGraphMatch/inst/doc/iGraphMatch.html                  |   26 -
 iGraphMatch-2.0.5/iGraphMatch/man/as.character.splrMatrix.Rd             |only
 iGraphMatch-2.0.5/iGraphMatch/man/gm.Rd                                  |   23 +
 iGraphMatch-2.0.5/iGraphMatch/man/iGraphMatch-package.Rd                 |    2 
 iGraphMatch-2.0.5/iGraphMatch/tests/testthat/Rplots.pdf                  |binary
 iGraphMatch-2.0.5/iGraphMatch/tests/testthat/_snaps/start.md             |only
 iGraphMatch-2.0.5/iGraphMatch/tests/testthat/test-ieg.R                  |    1 
 iGraphMatch-2.0.5/iGraphMatch/tests/testthat/test-splr_matrix_class.R    |  153 +++++-----
 iGraphMatch-2.0.5/iGraphMatch/tests/testthat/test-start.R                |   60 +--
 25 files changed, 222 insertions(+), 179 deletions(-)

More information about iGraphMatch at CRAN
Permanent link

Package nbpMatching updated to version 1.5.5 with previous version 1.5.4 dated 2023-08-18

Title: Functions for Optimal Non-Bipartite Matching
Description: Perform non-bipartite matching and matched randomization. A "bipartite" matching utilizes two separate groups, e.g. smokers being matched to nonsmokers or cases being matched to controls. A "non-bipartite" matching creates mates from one big group, e.g. 100 hospitals being randomized for a two-arm cluster randomized trial or 5000 children who have been exposed to various levels of secondhand smoke and are being paired to form a greater exposure vs. lesser exposure comparison. At the core of a non-bipartite matching is a N x N distance matrix for N potential mates. The distance between two units expresses a measure of similarity or quality as mates (the lower the better). The 'gendistance()' and 'distancematrix()' functions assist in creating this. The 'nonbimatch()' function creates the matching that minimizes the total sum of distances between mates; hence, it is referred to as an "optimal" matching. The 'assign.grp()' function aids in performing a matched randomization. Note bipartit [...truncated...]
Author: Cole Beck [aut, cre], Bo Lu [aut], Robert Greevy [aut]
Maintainer: Cole Beck <cole.beck@vumc.org>

Diff between nbpMatching versions 1.5.4 dated 2023-08-18 and 1.5.5 dated 2024-05-17

 COPYING                               |   32 -
 DESCRIPTION                           |   10 
 MD5                                   |   72 +--
 NAMESPACE                             |   48 +-
 NEWS.md                               |   73 +--
 R/assign.grp.R                        |  116 ++---
 R/distancematrix.R                    |  274 ++++++-------
 R/fill.missing.R                      |  162 +++----
 R/gendistance.R                       |  694 +++++++++++++++++-----------------
 R/make.phantoms.R                     |  158 +++----
 R/nbpmatching-package.R               |  168 ++++----
 R/nonbimatch.R                        |  376 +++++++++---------
 R/qom.R                               |  334 ++++++++--------
 R/quantile.R                          |   52 +-
 R/subsetMatches.R                     |  114 ++---
 R/utils.R                             |  138 +++---
 inst/tinytest/sample_dist_mat.csv     |   58 +-
 inst/tinytest/sample_dist_mat_wrn.csv |   58 +-
 inst/tinytest/test_assign.grp.R       |   20 
 inst/tinytest/test_distancematrix.R   |   70 +--
 inst/tinytest/test_gendistance.R      |   78 +--
 inst/tinytest/test_nonbimatch.R       |   60 +-
 inst/tinytest/test_utils.R            |   24 -
 man/assign.grp.Rd                     |   88 ++--
 man/distancematrix.Rd                 |  158 +++----
 man/fill.missing.Rd                   |  104 ++---
 man/gendistance.Rd                    |  270 ++++++-------
 man/get.sets.Rd                       |   88 ++--
 man/make.phantoms.Rd                  |  114 ++---
 man/nbpMatching-internal.Rd           |   46 +-
 man/nbpMatching-package.Rd            |  133 +++---
 man/nonbimatch.Rd                     |  112 ++---
 man/qom.Rd                            |  154 +++----
 man/quantile.Rd                       |   72 +--
 man/scalar.dist.Rd                    |   64 +--
 man/subsetMatches.Rd                  |  112 ++---
 src/fcorematch.f                      |    8 
 37 files changed, 2355 insertions(+), 2357 deletions(-)

More information about nbpMatching at CRAN
Permanent link

Package ecce updated to version 3.0.1 with previous version 2.0.6 dated 2023-10-09

Title: Translate English Sentence into Chinese, or Translate Chinese Sentence into English
Description: If translate English or Chinese sentence, there is a faster way for R user. You can pass in an English or Chinese sentence, ecce package support both English and Chinese translation. It also support browse translation results in website. In addition, also support obtain the pinyin of the Chinese character, you can more easily understand the pronunciation of the Chinese character.
Author: Xinyuan Chu [aut, cre]
Maintainer: Xinyuan Chu <chuxinyuan@outlook.com>

Diff between ecce versions 2.0.6 dated 2023-10-09 and 3.0.1 dated 2024-05-17

 DESCRIPTION           |   33 ++----
 LICENSE               |    4 
 MD5                   |   24 ++--
 R/translate.R         |  257 ++++++++++++++++++++++++-------------------------
 R/translate_view.R    |  258 ++++++++++++++++++++++++--------------------------
 README.md             |  150 ++++++++++++++---------------
 build/vignette.rds    |binary
 inst/doc/ecce.R       |   10 -
 inst/doc/ecce.Rmd     |  196 ++++++++++++++++++-------------------
 inst/doc/ecce.html    |   28 ++---
 man/translate.Rd      |   10 -
 man/translate_view.Rd |    8 -
 vignettes/ecce.Rmd    |  196 ++++++++++++++++++-------------------
 13 files changed, 580 insertions(+), 594 deletions(-)

More information about ecce at CRAN
Permanent link

Package apache.sedona updated to version 1.6.0 with previous version 1.5.3 dated 2024-05-10

Title: R Interface for Apache Sedona
Description: R interface for 'Apache Sedona' based on 'sparklyr' (<https://sedona.apache.org>).
Author: Apache Sedona [aut, cre], Jia Yu [ctb, cph], Yitao Li [aut, cph] , The Apache Software Foundation [cph], RStudio [cph]
Maintainer: Apache Sedona <private@sedona.apache.org>

Diff between apache.sedona versions 1.5.3 dated 2024-05-10 and 1.6.0 dated 2024-05-17

 DESCRIPTION      |    6 +++---
 MD5              |    4 ++--
 R/dependencies.R |    4 ++--
 3 files changed, 7 insertions(+), 7 deletions(-)

More information about apache.sedona at CRAN
Permanent link

Package usmapdata updated to version 0.3.0 with previous version 0.2.2 dated 2024-03-08

Title: Mapping Data for 'usmap' Package
Description: Provides a container for data used by the 'usmap' package. The data used by 'usmap' has been extracted into this package so that the file size of the 'usmap' package can be reduced greatly. The data in this package will be updated roughly once per year as new map data files are provided by the US Census Bureau.
Author: Paolo Di Lorenzo [aut, cre]
Maintainer: Paolo Di Lorenzo <dilorenzo@hey.com>

Diff between usmapdata versions 0.2.2 dated 2024-03-08 and 0.3.0 dated 2024-05-17

 DESCRIPTION                             |    8 
 MD5                                     |   42 +-
 NAMESPACE                               |   12 
 NEWS.md                                 |  119 +++----
 R/create-us-map.R                       |  518 ++++++++++++++++----------------
 R/fips-data.R                           |   54 +--
 R/us-map.R                              |  172 +++++-----
 R/usmapdata-package.R                   |    2 
 README.md                               |  196 ++++++------
 inst/WORDLIST                           |only
 inst/extdata/us_counties.gpkg           |binary
 inst/extdata/us_counties_centroids.gpkg |binary
 inst/extdata/us_states.gpkg             |binary
 inst/extdata/us_states_centroids.gpkg   |binary
 man/centroid_labels.Rd                  |   46 +-
 man/create_us_map.Rd                    |  148 ++++-----
 man/fips_data.Rd                        |   58 +--
 man/us_map.Rd                           |   98 +++---
 man/usmapdata.Rd                        |  104 +++---
 tests/spelling.R                        |only
 tests/testthat.R                        |   24 -
 tests/testthat/test-fips-data.R         |   82 ++---
 tests/testthat/test-usmap.R             |  152 ++++-----
 23 files changed, 921 insertions(+), 914 deletions(-)

More information about usmapdata at CRAN
Permanent link

Package marginalizedRisk updated to version 2024.5-17 with previous version 2024.1-27 dated 2024-01-27

Title: Estimating Marginalized Risk
Description: Estimates risk as a function of a marker by integrating over other covariates in a conditional risk model.
Author: Youyi Fong [cre], Peter Gilbert [aut], Marco Carone [aut]
Maintainer: Youyi Fong <youyifong@gmail.com>

Diff between marginalizedRisk versions 2024.1-27 dated 2024-01-27 and 2024.5-17 dated 2024-05-17

 DESCRIPTION                                 |    6 +++---
 MD5                                         |    6 ++++--
 R/marginalized.risk.R                       |    1 +
 inst/doc/marginalizedRisk-vignette.pdf.asis |only
 vignettes                                   |only
 5 files changed, 8 insertions(+), 5 deletions(-)

More information about marginalizedRisk at CRAN
Permanent link

Package cmahalanobis updated to version 0.2.0 with previous version 0.1.0 dated 2024-02-20

Title: Calculate the Mahalanobis Distance for a Given List of Data Frames with Factors
Description: It provides a function that calculates the Mahalanobis distance between each pair of species in a list of data frames. Each data frame contains the observations of a species with some factors. Mahalanobis distance is a measure of dissimilarity between two vectors of multivariate random variables, based on the covariance matrix. This distance is useful for statistical matching or fusion of data, that is the integration of two data sources that refer to the same target population and that share some variables.
Author: Flavio Gioia
Maintainer: Flavio Gioia <flaviogioia.fg@gmail.com>

Diff between cmahalanobis versions 0.1.0 dated 2024-02-20 and 0.2.0 dated 2024-05-17

 DESCRIPTION                        |   19 ++---
 MD5                                |   20 +++--
 NAMESPACE                          |    5 +
 R/cmahalanobis.R                   |  134 +++++++++++++++++++++++++-----------
 build                              |only
 inst                               |only
 man/cmahalanobis.Rd                |   15 +++-
 tests/testthat.R                   |   22 +++--
 tests/testthat/cmahalanobis.R      |  137 +++++++++++++++++++++++++------------
 tests/testthat/test-cmahalanobis.R |  102 ---------------------------
 vignettes                          |only
 11 files changed, 242 insertions(+), 212 deletions(-)

More information about cmahalanobis at CRAN
Permanent link

Package clinDataReview updated to version 1.5.2 with previous version 1.5.1 dated 2024-04-24

Title: Clinical Data Review Tool
Description: Creation of interactive tables, listings and figures ('TLFs') and associated report for exploratory analysis of data in a clinical trial, e.g. for clinical oversight activities. Interactive figures include sunburst, treemap, scatterplot, line plot and barplot of counts data. Interactive tables include table of summary statistics (as counts of adverse events, enrollment table) and listings. Possibility to compare data (summary table or listing) across two data batches/sets. A clinical data review report is created via study-specific configuration files and template 'R Markdown' reports contained in the package.
Author: Laure Cougnaud [aut, cre], Michela Pasetto [aut], Lennart Tuijnder [aut], Adriaan Blommaert [aut], Arne De Roeck [ctb, rev] , Open Analytics [cph]
Maintainer: Laure Cougnaud <laure.cougnaud@openanalytics.eu>

Diff between clinDataReview versions 1.5.1 dated 2024-04-24 and 1.5.2 dated 2024-05-17

 DESCRIPTION                                    |   10 ++--
 MD5                                            |   14 ++---
 R/init.R                                       |    2 
 inst/NEWS                                      |    5 ++
 inst/doc/clinDataReview-dataPreprocessing.html |    6 +-
 inst/doc/clinDataReview-dataVisualization.html |   62 ++++++++++++-------------
 inst/doc/clinDataReview-reporting.html         |    6 +-
 tests/testthat/test_scatterplotClinData.R      |   56 ++++++++++++++++++++--
 8 files changed, 106 insertions(+), 55 deletions(-)

More information about clinDataReview at CRAN
Permanent link

Package good updated to version 1.0.2 with previous version 1.0.1 dated 2021-05-10

Title: Good Regression
Description: Fit Good regression models to count data (Tur et al., 2021) <doi:10.48550/arXiv.2105.01557>. The package provides functions for model estimation and model prediction. Density, distribution function, quantile function and random generation for the Good distribution are also provided.
Author: Jordi Tur [aut, cre], David Morina [ctb], Pere Puig [ctb], Argimiro Arratia [ctb], Alejandra Cabana [ctb], David Agis [ctb], Amanda Fernandez-Fontelo [aut]
Maintainer: Jordi Tur <jjtur@crm.cat>

Diff between good versions 1.0.1 dated 2021-05-10 and 1.0.2 dated 2024-05-17

 DESCRIPTION  |   15 +++++++++++----
 MD5          |   13 ++++++++++---
 R/rgood.R    |    4 ++--
 man/rgood.Rd |    2 +-
 tests        |only
 5 files changed, 24 insertions(+), 10 deletions(-)

More information about good at CRAN
Permanent link

Package stan4bart updated to version 0.0-8 with previous version 0.0-7 dated 2023-12-08

Title: Bayesian Additive Regression Trees with Stan-Sampled Parametric Extensions
Description: Fits semiparametric linear and multilevel models with non-parametric additive Bayesian additive regression tree (BART; Chipman, George, and McCulloch (2010) <doi:10.1214/09-AOAS285>) components and Stan (Stan Development Team (2021) <https://mc-stan.org/>) sampled parametric ones. Multilevel models can be expressed using 'lme4' syntax (Bates, Maechler, Bolker, and Walker (2015) <doi:10.18637/jss.v067.i01>).
Author: Vincent Dorie [aut, cre] , Ben Goodrich [ctb] , Jonah Gabry [ctb] , Imad Ali [ctb] , Sam Brilleman [ctb] , Paul-Christian Burkner [ctb] , Joshua Pritikin [ctb] , Andrew Gelman [ctb] , Bob Carpenter [ctb] , Matt Hoffman [ctb] , Daniel Lee [ctb] , Mich [...truncated...]
Maintainer: Vincent Dorie <vdorie@gmail.com>

Diff between stan4bart versions 0.0-7 dated 2023-12-08 and 0.0-8 dated 2024-05-17

 DESCRIPTION      |    8 ++++----
 MD5              |    8 ++++----
 R/misc.R         |    1 -
 inst/NEWS.Rd     |    8 ++++++++
 src/Makevars.win |    2 +-
 5 files changed, 17 insertions(+), 10 deletions(-)

More information about stan4bart at CRAN
Permanent link

Package rqlm updated to version 1.3-1 with previous version 1.2-1 dated 2024-01-19

Title: Modified Poisson and Least-Squares Regressions for Binary Outcome
Description: Modified Poisson and least-squares regression analyses for binary outcomes of Zou (2004) <doi:10.1093/aje/kwh090> and Cheung (2007) <doi:10.1093/aje/kwm223> have been standard multivariate analysis methods to estimate risk ratio and risk difference in clinical and epidemiological studies. This R package involves an easy-to-handle function to implement these analyses by simple commands. Also, recent studies have shown the ordinary robust variance estimator possibly has serious bias under small or moderate sample size situations for these methods. This package also provides computational tools to calculate alternative accurate confidence intervals (Noma and Gosho (2024) <Forthcoming>).
Author: Hisashi Noma [aut, cre]
Maintainer: Hisashi Noma <noma@ism.ac.jp>

Diff between rqlm versions 1.2-1 dated 2024-01-19 and 1.3-1 dated 2024-05-17

 DESCRIPTION  |    8 ++++----
 MD5          |    8 +++++---
 NAMESPACE    |    1 +
 NEWS.md      |    4 ++++
 R/coeff.r    |only
 man/coeff.Rd |only
 6 files changed, 14 insertions(+), 7 deletions(-)

More information about rqlm at CRAN
Permanent link

Package Rnanoflann updated to version 0.0.3 with previous version 0.0.2 dated 2023-12-05

Title: Extremely Fast Nearest Neighbor Search
Description: Finds the k nearest neighbours for every point in a given dataset using Jose Luis' 'nanoflann' library. There is support for exact searches, fixed radius searches with 'kd' trees and two distances, the 'Euclidean' and 'Manhattan'. For more information see <https://github.com/jlblancoc/nanoflann>. Also, the 'nanoflann' library is exported and ready to be used via the linking to mechanism.
Author: Manos Papadakis [aut, cre, cph], Jose Luis Blanco [aut, cph], Michail Tsagris [ctb]
Maintainer: Manos Papadakis <papadakm95@gmail.com>

Diff between Rnanoflann versions 0.0.2 dated 2023-12-05 and 0.0.3 dated 2024-05-17

 DESCRIPTION                     |    8 +-
 MD5                             |   16 ++---
 NEWS.md                         |   11 +++
 README.md                       |    7 +-
 build/partial.rdb               |binary
 inst/include/internal/Coeff.h   |    5 +
 inst/include/internal/Dist.h    |  111 +++++++++++++++++++++++++++++++++++++---
 inst/include/internal/dists.hpp |   12 +---
 man/macros/system.Rd            |   52 +++++++++---------
 9 files changed, 166 insertions(+), 56 deletions(-)

More information about Rnanoflann at CRAN
Permanent link

Package clusterMI updated to version 1.1.0 with previous version 1.0.0 dated 2024-03-12

Title: Cluster Analysis with Missing Values by Multiple Imputation
Description: Allows clustering of incomplete observations by addressing missing values using multiple imputation. For achieving this goal, the methodology consists in three steps, following Audigier and Niang 2022 <doi:10.1007/s11634-022-00519-1>. I) Missing data imputation using dedicated models. Four multiple imputation methods are proposed, two are based on joint modelling and two are fully sequential methods, as discussed in Audigier et al. (2021) <doi:10.48550/arXiv.2106.04424>. II) cluster analysis of imputed data sets. Six clustering methods are available (distances-based or model-based), but custom methods can also be easily used. III) Partition pooling. The set of partitions is aggregated using Non-negative Matrix Factorization based method. An associated instability measure is computed by bootstrap (see Fang, Y. and Wang, J., 2012 <doi:10.1016/j.csda.2011.09.003>). Among applications, this instability measure can be used to choose a number of clusters with missing value [...truncated...]
Author: Vincent Audigier [aut, cre] , Hang Joon Kim [ctb]
Maintainer: Vincent Audigier <vincent.audigier@cnam.fr>

Diff between clusterMI versions 1.0.0 dated 2024-03-12 and 1.1.0 dated 2024-05-17

 DESCRIPTION              |   13 -
 MD5                      |   44 +++---
 R/choosem.R              |   50 ++++++-
 R/choosenbclust.R        |  125 +++++++++++-------
 R/chooser.R              |    2 
 R/clusterMI-package.R    |    2 
 R/clusterMI.R            |   37 ++++-
 R/drawW.R                |   19 ++
 R/imputedata.R           |   74 +++++++---
 R/mclustboot.intern.R    |   10 +
 R/myem.mix.R             |   76 ++++++++---
 R/myimp.mix.R            |   59 ++++++++
 R/onefold.chooser.R      |    2 
 R/overimpute.R           |   44 +++---
 R/varselbest.R           |    2 
 inst/doc/clusterMI.R     |  321 +++++++++++++++++++++++++++++++++++++++++++----
 inst/doc/clusterMI.Rmd   |  321 +++++++++++++++++++++++++++++++++++++++++++----
 inst/doc/clusterMI.html  |   26 +--
 man/choosem.Rd           |    7 -
 man/clusterMI-package.Rd |    2 
 man/imputedata.Rd        |    4 
 man/overimpute.Rd        |   18 +-
 vignettes/clusterMI.Rmd  |  321 +++++++++++++++++++++++++++++++++++++++++++----
 23 files changed, 1331 insertions(+), 248 deletions(-)

More information about clusterMI at CRAN
Permanent link

Package clinUtils updated to version 0.2.0 with previous version 0.1.5 dated 2024-04-23

Title: General Utility Functions for Analysis of Clinical Data
Description: Utility functions to facilitate the import, the reporting and analysis of clinical data. Example datasets in 'SDTM' and 'ADaM' format, containing a subset of patients/domains from the 'CDISC Pilot 01 study' are also available as R datasets to demonstrate the package functionalities.
Author: Laure Cougnaud [aut, cre], Michela Pasetto [aut], Arne De Roeck [rev] , Open Analytics [cph]
Maintainer: Laure Cougnaud <laure.cougnaud@openanalytics.eu>

Diff between clinUtils versions 0.1.5 dated 2024-04-23 and 0.2.0 dated 2024-05-17

 DESCRIPTION                            |    8 +-
 MD5                                    |   18 ++---
 R/loadDataADaMSDTM.R                   |  108 ++++++++++++++++++++++++---------
 build/vignette.rds                     |binary
 data/dataADaMCDISCP01.RData            |binary
 data/dataSDTMCDISCP01.RData            |binary
 inst/NEWS                              |    4 +
 inst/doc/clinUtils-vignette.html       |   52 +++++++--------
 man/loadDataADaMSDTM.Rd                |   21 ++++--
 tests/testthat/test_loadDataADaMSDTM.R |   65 +++++++++++++++++++
 10 files changed, 205 insertions(+), 71 deletions(-)

More information about clinUtils at CRAN
Permanent link

Package ggiraph updated to version 0.8.10 with previous version 0.8.9 dated 2024-02-24

Title: Make 'ggplot2' Graphics Interactive
Description: Create interactive 'ggplot2' graphics using 'htmlwidgets'.
Author: David Gohel [aut, cre], Panagiotis Skintzos [aut], Mike Bostock [cph] , Speros Kokenes [cph] , Eric Shull [cph] , Lee Thomason [cph] , Vladimir Agafonkin [cph] , Eric Book [ctb]
Maintainer: David Gohel <david.gohel@ardata.fr>

Diff between ggiraph versions 0.8.9 dated 2024-02-24 and 0.8.10 dated 2024-05-17

 ggiraph-0.8.10/ggiraph/DESCRIPTION                                                        |   64 +++----
 ggiraph-0.8.10/ggiraph/MD5                                                                |   43 ++---
 ggiraph-0.8.10/ggiraph/NAMESPACE                                                          |    1 
 ggiraph-0.8.10/ggiraph/NEWS.md                                                            |   17 ++
 ggiraph-0.8.10/ggiraph/R/element_interactive.R                                            |    5 
 ggiraph-0.8.10/ggiraph/R/geom_boxplot_interactive.R                                       |    3 
 ggiraph-0.8.10/ggiraph/R/girafe.R                                                         |   84 ++++++----
 ggiraph-0.8.10/ggiraph/R/girafe_options.R                                                 |    8 
 ggiraph-0.8.10/ggiraph/R/guide_interactive.R                                              |    3 
 ggiraph-0.8.10/ggiraph/R/labeller_interactive.R                                           |    4 
 ggiraph-0.8.10/ggiraph/R/layer_interactive.R                                              |    3 
 ggiraph-0.8.10/ggiraph/R/scale_interactive.R                                              |    4 
 ggiraph-0.8.10/ggiraph/build/vignette.rds                                                 |binary
 ggiraph-0.8.10/ggiraph/inst/htmlwidgets/girafe.yaml                                       |    8 
 ggiraph-0.8.10/ggiraph/inst/htmlwidgets/lib/d3-lasso-0.0.5/d3-lasso.min.js                |    2 
 ggiraph-0.8.10/ggiraph/inst/htmlwidgets/lib/flatbush-4.4.0                                |only
 ggiraph-0.8.10/ggiraph/inst/htmlwidgets/lib/ggiraphjs-0.8.10                              |only
 ggiraph-0.8.10/ggiraph/inst/htmlwidgets/lib/save-svg-as-png-1.4.17/save-svg-as-png.min.js |    2 
 ggiraph-0.8.10/ggiraph/inst/tinytest/test-trailing-comma.R                                |only
 ggiraph-0.8.10/ggiraph/man/girafe.Rd                                                      |   22 +-
 ggiraph-0.8.10/ggiraph/man/girafeOutput.Rd                                                |   23 ++
 ggiraph-0.8.10/ggiraph/man/opts_toolbar.Rd                                                |    4 
 ggiraph-0.8.9/ggiraph/inst/htmlwidgets/lib/flatbush-4.0.0                                 |only
 ggiraph-0.8.9/ggiraph/inst/htmlwidgets/lib/ggiraphjs-0.4.6                                |only
 24 files changed, 184 insertions(+), 116 deletions(-)

More information about ggiraph at CRAN
Permanent link

Package bipartite updated to version 2.20 with previous version 2.19 dated 2023-11-30

Title: Visualising Bipartite Networks and Calculating Some (Ecological) Indices
Description: Functions to visualise webs and calculate a series of indices commonly used to describe pattern in (ecological) webs. It focuses on webs consisting of only two levels (bipartite), e.g. pollination webs or predator-prey-webs. Visualisation is important to get an idea of what we are actually looking at, while the indices summarise different aspects of the web's topology.
Author: Carsten F. Dormann [aut, cre] , Jochen Fruend [aut] , Bernd Gruber [aut] , Stephen Beckett [ctb] , Mariano Devoto [ctb] , Gabriel M.F. Felix [ctb] , Jose M. Iriondo [ctb] , Tore Opsahl [ctb] , Rafael B.P. Pinheiro [ctb] , Rouven Strauss [ctb], Diego [...truncated...]
Maintainer: Carsten F. Dormann <carsten.dormann@biom.uni-freiburg.de>

Diff between bipartite versions 2.19 dated 2023-11-30 and 2.20 dated 2024-05-17

 DESCRIPTION                  |    8 ++++----
 MD5                          |   22 +++++++++++-----------
 NAMESPACE                    |    2 +-
 R/compart.R                  |    4 ++--
 R/networklevel.R             |   13 ++++++++-----
 R/plotweb.R                  |   23 ++++++++++++-----------
 R/plotweb2.R                 |    2 +-
 R/visweb.R                   |    4 ++--
 inst/doc/Intro2bipartite.pdf |binary
 man/betalinkr.Rd             |    2 +-
 man/bipartite-package.Rd     |   14 ++++++++++++--
 man/networklevel.Rd          |   17 ++++++++++-------
 12 files changed, 64 insertions(+), 47 deletions(-)

More information about bipartite at CRAN
Permanent link

Package rmarkdown updated to version 2.27 with previous version 2.26 dated 2024-03-05

Title: Dynamic Documents for R
Description: Convert R Markdown documents into a variety of formats.
Author: JJ Allaire [aut], Yihui Xie [aut, cre] , Christophe Dervieux [aut] , Jonathan McPherson [aut], Javier Luraschi [aut], Kevin Ushey [aut], Aron Atkins [aut], Hadley Wickham [aut], Joe Cheng [aut], Winston Chang [aut], Richard Iannone [aut] , Andrew Dun [...truncated...]
Maintainer: Yihui Xie <xie@yihui.name>

Diff between rmarkdown versions 2.26 dated 2024-03-05 and 2.27 dated 2024-05-17

 DESCRIPTION                              |    8 ++++----
 MD5                                      |   23 ++++++++++++-----------
 NAMESPACE                                |    1 +
 NEWS.md                                  |    8 ++++++++
 R/base64.R                               |    3 ++-
 R/html_paged.R                           |    1 +
 R/publish_site.R                         |    3 ---
 R/util.R                                 |    3 ++-
 README.md                                |    2 +-
 build/vignette.rds                       |binary
 inst/doc/lua-filters.html                |    6 +++---
 man/publish_site.Rd                      |    9 ++++-----
 tests/testthat/test-html_document_base.R |only
 13 files changed, 38 insertions(+), 29 deletions(-)

More information about rmarkdown at CRAN
Permanent link

Package NMA updated to version 1.4-3 with previous version 1.4-2 dated 2024-02-18

Title: Network Meta-Analysis Based on Multivariate Meta-Analysis Models
Description: Network meta-analysis tools based on contrast-based approach using the multivariate meta-analysis and meta-regression models (Noma et al. (2023) <Forthcoming>). Standard analysis tools for network meta-analysis and meta-regression (e.g., synthesis analysis, ranking analysis, and creating league table) are available by simple commands. For inconsistency analyses, the local and global inconsistency tests based on the Higgins' design-by-treatment interaction model can be applied. Also, the side-splitting and the Jackson's random inconsistency model are available. Standard graphical tools for network meta-analysis (e.g., network plot, ranked forest plot, and transitivity analysis) can also be utilized. For the synthesis analyses, the Noma-Hamura's improved REML (restricted maximum likelihood)-based methods (Noma et al. (2023) <doi:10.1002/jrsm.1652> <doi:10.1002/jrsm.1651>) are adopted as the default methods.
Author: Hisashi Noma [aut, cre] , Kazushi Maruo [aut], Shiro Tanaka [aut], Toshi A. Furukawa [aut]
Maintainer: Hisashi Noma <noma@ism.ac.jp>

Diff between NMA versions 1.4-2 dated 2024-02-18 and 1.4-3 dated 2024-05-17

 DESCRIPTION  |    8 ++++----
 MD5          |    8 ++++----
 NEWS.md      |    4 ++++
 R/pairwise.r |   46 +++++++++++++++++++++++++++-------------------
 R/setup.r    |    2 ++
 5 files changed, 41 insertions(+), 27 deletions(-)

More information about NMA at CRAN
Permanent link

Package rhosa updated to version 0.3.0 with previous version 0.2.0 dated 2022-01-21

Title: Higher-Order Spectral Analysis
Description: Higher-order spectra or polyspectra of time series, such as bispectrum and bicoherence, have been investigated in abundant literature and applied to problems of signal detection in a wide range of fields. This package aims to provide a simple API to estimate and analyze them. The current implementation is based on Brillinger and Irizarry (1998) <doi:10.1016/S0165-1684(97)00217-X> for estimating bispectrum or bicoherence, Lii and Helland (1981) <doi:10.1145/355958.355961> for cross-bispectrum, and Kim and Powers (1979) <doi:10.1109/TPS.1979.4317207> for cross-bicoherence.
Author: Takeshi Abe [aut, cre]
Maintainer: Takeshi Abe <tabe@fixedpoint.jp>

Diff between rhosa versions 0.2.0 dated 2022-01-21 and 0.3.0 dated 2024-05-17

 DESCRIPTION                            |   10 
 MD5                                    |   36 +-
 NAMESPACE                              |    2 
 NEWS.md                                |    6 
 R/biperiodogram.R                      |only
 R/cross_bispectra.R                    |    4 
 R/model.R                              |   52 +++
 README.md                              |   23 +
 build/vignette.rds                     |binary
 inst/doc/example.R                     |    2 
 inst/doc/example.html                  |  270 ++++++++---------
 inst/doc/quadratic_phase_coupling.R    |    2 
 inst/doc/quadratic_phase_coupling.html |  514 ++++++++++++++++-----------------
 man/biperiodogram.Rd                   |only
 man/cross_bicoherence.Rd               |    4 
 man/cross_bispectrum.Rd                |    4 
 man/kim_and_powers_model.Rd            |only
 man/three_channel_model.Rd             |    2 
 tests/testthat/test-biperiodogram.R    |only
 tests/testthat/test-model.R            |only
 vignettes/data/auto                    |only
 vignettes/data/references.bib          |   15 
 22 files changed, 529 insertions(+), 417 deletions(-)

More information about rhosa at CRAN
Permanent link

Package broom updated to version 1.0.6 with previous version 1.0.5 dated 2023-06-09

Title: Convert Statistical Objects into Tidy Tibbles
Description: Summarizes key information about statistical objects in tidy tibbles. This makes it easy to report results, create plots and consistently work with large numbers of models at once. Broom provides three verbs that each provide different types of information about a model. tidy() summarizes information about model components such as coefficients of a regression. glance() reports information about an entire model, such as goodness of fit measures like AIC and BIC. augment() adds information about individual observations to a dataset, such as fitted values or influence measures.
Author: David Robinson [aut], Alex Hayes [aut] , Simon Couch [aut, cre] , Posit Software, PBC [cph, fnd], Indrajeet Patil [ctb] , Derek Chiu [ctb], Matthieu Gomez [ctb], Boris Demeshev [ctb], Dieter Menne [ctb], Benjamin Nutter [ctb], Luke Johnston [ctb], Be [...truncated...]
Maintainer: Simon Couch <simon.couch@posit.co>

Diff between broom versions 1.0.5 dated 2023-06-09 and 1.0.6 dated 2024-05-17

 broom-1.0.5/broom/tests/testthat/test-sp.R          |only
 broom-1.0.6/broom/DESCRIPTION                       |   25 +--
 broom-1.0.6/broom/MD5                               |  127 ++++++++--------
 broom-1.0.6/broom/NEWS.md                           |  100 ++++++++----
 broom-1.0.6/broom/R/betareg-tidiers.R               |    2 
 broom-1.0.6/broom/R/broom-package.R                 |   30 ++-
 broom-1.0.6/broom/R/broom.R                         |   14 -
 broom-1.0.6/broom/R/btergm-tidiers.R                |    2 
 broom-1.0.6/broom/R/cluster-tidiers.R               |    2 
 broom-1.0.6/broom/R/geepack-tidiers.R               |    2 
 broom-1.0.6/broom/R/list-svd-tidiers.R              |    5 
 broom-1.0.6/broom/R/margins-tidiers.R               |  128 +++++++++-------
 broom-1.0.6/broom/R/mgcv-tidiers.R                  |   14 +
 broom-1.0.6/broom/R/muhaz-tidiers.R                 |    2 
 broom-1.0.6/broom/R/nnet-tidiers.R                  |    2 
 broom-1.0.6/broom/R/sp-tidiers.R                    |   98 ++----------
 broom-1.0.6/broom/R/spdep-tidiers.R                 |    2 
 broom-1.0.6/broom/R/stats-anova-tidiers.R           |    6 
 broom-1.0.6/broom/R/stats-kmeans-tidiers.R          |    2 
 broom-1.0.6/broom/R/stats-lm-tidiers.R              |   11 +
 broom-1.0.6/broom/R/survey-tidiers.R                |    2 
 broom-1.0.6/broom/R/utilities.R                     |    4 
 broom-1.0.6/broom/R/vars-tidiers.R                  |    2 
 broom-1.0.6/broom/README.md                         |    2 
 broom-1.0.6/broom/build/vignette.rds                |binary
 broom-1.0.6/broom/inst/doc/adding-tidiers.html      |    4 
 broom-1.0.6/broom/inst/doc/available-methods.html   |    4 
 broom-1.0.6/broom/inst/doc/bootstrapping.html       |    4 
 broom-1.0.6/broom/inst/doc/broom.html               |   66 ++++----
 broom-1.0.6/broom/inst/doc/broom_and_dplyr.R        |    2 
 broom-1.0.6/broom/inst/doc/broom_and_dplyr.html     |  154 ++++++++++----------
 broom-1.0.6/broom/man/augment.kmeans.Rd             |    2 
 broom-1.0.6/broom/man/augment.lm.Rd                 |    6 
 broom-1.0.6/broom/man/augment.pam.Rd                |    2 
 broom-1.0.6/broom/man/augment.sarlm.Rd              |    2 
 broom-1.0.6/broom/man/broom.Rd                      |   13 -
 broom-1.0.6/broom/man/glance.anova.Rd               |    2 
 broom-1.0.6/broom/man/glance.gam.Rd                 |    2 
 broom-1.0.6/broom/man/glance.geeglm.Rd              |    2 
 broom-1.0.6/broom/man/glance.kmeans.Rd              |    2 
 broom-1.0.6/broom/man/glance.margins.Rd             |   56 -------
 broom-1.0.6/broom/man/glance.muhaz.Rd               |    2 
 broom-1.0.6/broom/man/glance.multinom.Rd            |    2 
 broom-1.0.6/broom/man/glance.pam.Rd                 |    2 
 broom-1.0.6/broom/man/glance.sarlm.Rd               |    2 
 broom-1.0.6/broom/man/glance.svyolr.Rd              |    2 
 broom-1.0.6/broom/man/sp_tidiers.Rd                 |    6 
 broom-1.0.6/broom/man/tidy.anova.Rd                 |    2 
 broom-1.0.6/broom/man/tidy.btergm.Rd                |    2 
 broom-1.0.6/broom/man/tidy.geeglm.Rd                |    2 
 broom-1.0.6/broom/man/tidy.kmeans.Rd                |    2 
 broom-1.0.6/broom/man/tidy.margins.Rd               |   58 -------
 broom-1.0.6/broom/man/tidy.muhaz.Rd                 |    2 
 broom-1.0.6/broom/man/tidy.multinom.Rd              |    2 
 broom-1.0.6/broom/man/tidy.pam.Rd                   |    2 
 broom-1.0.6/broom/man/tidy.sarlm.Rd                 |    2 
 broom-1.0.6/broom/man/tidy.svyolr.Rd                |    2 
 broom-1.0.6/broom/tests/testthat/test-betareg.R     |    5 
 broom-1.0.6/broom/tests/testthat/test-car.R         |   13 +
 broom-1.0.6/broom/tests/testthat/test-emmeans.R     |    3 
 broom-1.0.6/broom/tests/testthat/test-joineRML.R    |    3 
 broom-1.0.6/broom/tests/testthat/test-margins.R     |   14 +
 broom-1.0.6/broom/tests/testthat/test-metafor.R     |    3 
 broom-1.0.6/broom/tests/testthat/test-stats-anova.R |    3 
 broom-1.0.6/broom/tests/testthat/test-stats-lm.R    |   31 +++-
 65 files changed, 508 insertions(+), 566 deletions(-)

More information about broom at CRAN
Permanent link

Package goeveg updated to version 0.7.5 with previous version 0.7.4 dated 2024-02-26

Title: Functions for Community Data and Ordinations
Description: A collection of functions useful in (vegetation) community analyses and ordinations. Includes automatic species selection for ordination diagrams, NMDS stress/scree plots, species response curves, merging of taxa as well as calculation and sorting of synoptic tables.
Author: Friedemann von Lampe [aut, cre], Jenny Schellenberg [aut]
Maintainer: Friedemann von Lampe <fvonlampe@uni-goettingen.de>

Diff between goeveg versions 0.7.4 dated 2024-02-26 and 0.7.5 dated 2024-05-17

 DESCRIPTION         |   10 +++++-----
 MD5                 |   18 +++++++++---------
 NEWS.md             |    6 ++++++
 R/clean_matrix.R    |   12 +++++++++---
 R/syntable.R        |   11 ++++++-----
 R/trans_matrix.R    |    8 ++++++--
 build/partial.rdb   |binary
 data/scale_tabs.rda |binary
 man/clean_matrix.Rd |    2 +-
 man/syntable.Rd     |    4 +++-
 10 files changed, 45 insertions(+), 26 deletions(-)

More information about goeveg at CRAN
Permanent link

Package KernSmooth updated to version 2.23-24 with previous version 2.23-22 dated 2023-07-10

Title: Functions for Kernel Smoothing Supporting Wand & Jones (1995)
Description: Functions for kernel smoothing (and density estimation) corresponding to the book: Wand, M.P. and Jones, M.C. (1995) "Kernel Smoothing".
Author: Matt Wand [aut], Cleve Moler [ctb] , Brian Ripley [trl, cre, ctb]
Maintainer: Brian Ripley <ripley@stats.ox.ac.uk>

Diff between KernSmooth versions 2.23-22 dated 2023-07-10 and 2.23-24 dated 2024-05-17

 DESCRIPTION                                 |    8 ++--
 MD5                                         |   34 +++++++++----------
 PORTING                                     |   15 ++++++++
 inst/po/de/LC_MESSAGES/R-KernSmooth.mo      |binary
 inst/po/en@quot/LC_MESSAGES/R-KernSmooth.mo |binary
 po/R-KernSmooth.pot                         |    6 +--
 po/R-de.po                                  |   11 +++---
 src/blkest.f                                |   24 +++++++-------
 src/cp.f                                    |   43 ++++++++++++-------------
 src/dgedi.f                                 |   32 ++++++++++--------
 src/dgefa.f                                 |   10 +++--
 src/dgesl.f                                 |   44 ++++++++++++-------------
 src/linbin.f                                |    9 ++---
 src/linbin2D.f                              |    8 ++--
 src/locpoly.f                               |   42 ++++++++++++------------
 src/rlbin.f                                 |    8 ++--
 src/sdiag.f                                 |   42 ++++++++++++------------
 src/sstdiag.f                               |   48 ++++++++++++++--------------
 18 files changed, 203 insertions(+), 181 deletions(-)

More information about KernSmooth at CRAN
Permanent link

Package QTLEMM updated to version 1.5.4 with previous version 1.5.3 dated 2024-04-26

Title: QTL Mapping and Hotspots Detection
Description: For QTL mapping, this package comprises several functions designed to execute diverse tasks, such as simulating or analyzing data, calculating significance thresholds, and visualizing QTL mapping results. The single-QTL or multiple-QTL method, which enables the fitting and comparison of various statistical models, is employed to analyze the data for estimating QTL parameters. The models encompass linear regression, permutation tests, normal mixture models, and truncated normal mixture models. The Gaussian stochastic process is utilized to compute significance thresholds for QTL detection on a genetic linkage map within experimental populations. Two types of data, complete genotyping, and selective genotyping data from various experimental populations, including backcross, F2, recombinant inbred (RI) populations, and advanced intercrossed (AI) populations, are considered in the QTL mapping analysis. For QTL hotspot detection, statistical methods can be developed based on either utilizin [...truncated...]
Author: Ping-Yuan Chung [cre], Chen-Hung Kao [aut], Y.-T. Guo [aut], H.-N. Ho [aut], H.-I. Lee [aut], P.-Y. Wu [aut], M.-H. Yang [aut], M.-H. Zeng [aut]
Maintainer: Ping-Yuan Chung <pychung@webmail.stat.sinica.edu.tw>

Diff between QTLEMM versions 1.5.3 dated 2024-04-26 and 1.5.4 dated 2024-05-17

 DESCRIPTION  |    6 +++---
 MD5          |    4 ++--
 R/EQF.plot.R |   10 +++++-----
 3 files changed, 10 insertions(+), 10 deletions(-)

More information about QTLEMM at CRAN
Permanent link

Package melt updated to version 1.11.4 with previous version 1.11.3 dated 2024-04-12

Title: Multiple Empirical Likelihood Tests
Description: Performs multiple empirical likelihood tests. It offers an easy-to-use interface and flexibility in specifying hypotheses and calibration methods, extending the framework to simultaneous inferences. The core computational routines are implemented using the 'Eigen' 'C++' library and 'RcppEigen' interface, with 'OpenMP' for parallel computation. Details of the testing procedures are provided in Kim, MacEachern, and Peruggia (2023) <doi:10.1080/10485252.2023.2206919>. A companion paper by Kim, MacEachern, and Peruggia (2024) <doi:10.18637/jss.v108.i05> is available for further information. This work was supported by the U.S. National Science Foundation under Grants No. SES-1921523 and DMS-2015552.
Author: Eunseop Kim [aut, cph, cre], Steven MacEachern [ctb, ths], Mario Peruggia [ctb, ths], Pierre Chausse [rev], Alex Stringer [rev]
Maintainer: Eunseop Kim <markean@pm.me>

Diff between melt versions 1.11.3 dated 2024-04-12 and 1.11.4 dated 2024-05-17

 DESCRIPTION                           |    6 -
 MD5                                   |   22 +++---
 NEWS.md                               |    5 +
 build/partial.rdb                     |binary
 build/vignette.rds                    |binary
 inst/doc/article.Rnw                  |   22 ++----
 inst/doc/article.pdf                  |binary
 inst/doc/model.html                   |  118 +++++++++++++++++-----------------
 inst/doc/performance.html             |   82 +++++++++++------------
 src/compute_bootstrap_calibration.cpp |    4 -
 vignettes/article.Rnw                 |   22 ++----
 vignettes/references.bib              |   18 +----
 12 files changed, 146 insertions(+), 153 deletions(-)

More information about melt at CRAN
Permanent link

Package gatoRs updated to version 1.0.2 with previous version 1.0.1 dated 2023-11-30

Title: Geographic and Taxonomic Occurrence R-Based Scrubbing
Description: Streamlines downloading and cleaning biodiversity data from Integrated Digitized Biocollections (iDigBio) and the Global Biodiversity Information Facility (GBIF).
Author: Natalie N. Patten [aut, cre] , Michelle L. Gaynor [aut] , Douglas E. Soltis [ctb] , Pamela S. Soltis [ctb]
Maintainer: Natalie N. Patten <natalienpatten@gmail.com>

Diff between gatoRs versions 1.0.1 dated 2023-11-30 and 1.0.2 dated 2024-05-17

 gatoRs-1.0.1/gatoRs/vignettes/file3df86ed11ab7.html |only
 gatoRs-1.0.1/gatoRs/vignettes/file59dcd057fbf.html  |only
 gatoRs-1.0.1/gatoRs/vignettes/file643446b41751.html |only
 gatoRs-1.0.2/gatoRs/DESCRIPTION                     |    8 +-
 gatoRs-1.0.2/gatoRs/MD5                             |   24 +++---
 gatoRs-1.0.2/gatoRs/README.md                       |    5 +
 gatoRs-1.0.2/gatoRs/inst/CITATION                   |only
 gatoRs-1.0.2/gatoRs/inst/doc/Introduction.Rmd       |    2 
 gatoRs-1.0.2/gatoRs/inst/doc/Introduction.html      |    2 
 gatoRs-1.0.2/gatoRs/man/data.Rd                     |   36 +++++-----
 gatoRs-1.0.2/gatoRs/man/gators_merge.Rd             |   64 +++++++++---------
 gatoRs-1.0.2/gatoRs/man/get_gbif.Rd                 |   70 ++++++++++----------
 gatoRs-1.0.2/gatoRs/man/get_idigbio.Rd              |   56 ++++++++--------
 gatoRs-1.0.2/gatoRs/man/suppress_output.Rd          |   44 ++++++------
 gatoRs-1.0.2/gatoRs/vignettes/Introduction.Rmd      |    2 
 15 files changed, 158 insertions(+), 155 deletions(-)

More information about gatoRs at CRAN
Permanent link

Thu, 16 May 2024

Package wingen updated to version 2.1.2 with previous version 2.1.1 dated 2024-02-27

Title: Continuous Mapping of Genetic Diversity
Description: Generate continuous maps of genetic diversity using moving windows with options for rarefaction, interpolation, and masking as described in Bishop et al. (2023) <doi:10.1111/2041-210X.14090>.
Author: Anusha Bishop [aut, cre] , Anne Chambers [aut] , Ian Wang [aut]
Maintainer: Anusha Bishop <anusha.bishop@berkeley.edu>

Diff between wingen versions 2.1.1 dated 2024-02-27 and 2.1.2 dated 2024-05-16

 DESCRIPTION                    |    8 ++++---
 MD5                            |   42 ++++++++++++++++++++---------------------
 NEWS.md                        |    6 +++++
 R/circle_gd.R                  |   18 ++++++++++++++++-
 R/dist_gd.R                    |    2 -
 R/general_gd.R                 |    1 
 R/resist_gd.R                  |   18 ++++++++++++++++-
 R/window_gd.R                  |    4 +--
 README.md                      |   16 ++++++++++++---
 build/partial.rdb              |binary
 build/vignette.rds             |binary
 inst/doc/wingen-vignette.Rmd   |   17 ++++++++--------
 inst/doc/wingen-vignette.pdf   |binary
 man/circle_gd.Rd               |   19 +++++++++++++++++-
 man/circle_general.Rd          |    4 +--
 man/resist_gd.Rd               |   19 +++++++++++++++++-
 man/resist_general.Rd          |    4 +--
 man/window_gd.Rd               |    4 +--
 man/window_general.Rd          |    2 -
 man/wingen-package.Rd          |    8 +++++++
 vignettes/wingen-vignette.Rmd  |   17 ++++++++--------
 vignettes/wingen-vignette.html |   19 ++++++++----------
 22 files changed, 161 insertions(+), 67 deletions(-)

More information about wingen at CRAN
Permanent link

Package QuantBondCurves updated to version 0.3.0 with previous version 0.2.0 dated 2024-01-19

Title: Calculates Bond Values and Interest Rate Curves for Finance
Description: Values different types of assets and calibrates discount curves for quantitative financial analysis. It covers fixed coupon assets, floating note assets, interest and cross currency swaps with different payment frequencies. Enables the calibration of spot, instantaneous forward and basis curves, making it a powerful tool for accurate and flexible bond valuation and curve generation. The valuation and calibration techniques presented here are consistent with industry standards and incorporates author's own calculations. Tuckman, B., Serrat, A. (2022, ISBN: 978-1-119-83555-4).
Author: Camilo Diaz [aut, cre, com], Andres Galeano [aut], Julian Rojas [aut], Quantil S.A.S [aut, cph]
Maintainer: Camilo Diaz <kamodiaz@gmail.com>

Diff between QuantBondCurves versions 0.2.0 dated 2024-01-19 and 0.3.0 dated 2024-05-16

 DESCRIPTION               |   12 
 MD5                       |   10 
 NEWS.md                   |    2 
 build/vignette.rds        |binary
 inst/doc/quantcurves.R    |  916 ++++++++++-----------
 inst/doc/quantcurves.html | 1936 +++++++++++++++++++++++-----------------------
 6 files changed, 1439 insertions(+), 1437 deletions(-)

More information about QuantBondCurves at CRAN
Permanent link

Package omopgenerics updated to version 0.2.1 with previous version 0.2.0 dated 2024-04-30

Title: Methods and Classes for the OMOP Common Data Model
Description: Provides definitions of core classes and methods used by analytic pipelines that query the OMOP (Observational Medical Outcomes Partnership) common data model.
Author: Marti Catala [aut, cre] , Edward Burn [aut] , Mike Du [ctb] , Yuchen Guo [ctb] , Adam Black [ctb] , Marta Alcalde-Herraiz [ctb]
Maintainer: Marti Catala <marti.catalasabate@ndorms.ox.ac.uk>

Diff between omopgenerics versions 0.2.0 dated 2024-04-30 and 0.2.1 dated 2024-05-16

 DESCRIPTION                                  |    6 
 MD5                                          |   60 -
 R/arrange.R                                  |   60 -
 R/classCdmReference.R                        |   40 
 R/classCdmSource.R                           |  210 +--
 R/classCohortTable.R                         | 1463 +++++++++++++--------------
 R/classSummarisedResult.R                    | 1080 ++++++++++---------
 R/exportSummarisedResult.R                   |  290 ++---
 R/methodBind.R                               |    5 
 R/methodDropTable.R                          |  182 +--
 R/recordCohortAttrition.R                    |   10 
 R/summary.R                                  |   12 
 R/utilities.R                                | 1010 +++++++++---------
 build/vignette.rds                           |binary
 man/achillesColumns.Rd                       |    7 
 man/bind.Rd                                  |   34 
 man/cohortColumns.Rd                         |    6 
 man/collect.cohort_table.Rd                  |   38 
 man/compute.cdm_table.Rd                     |   54 
 man/emptyCohortTable.Rd                      |    4 
 man/emptySummarisedResult.Rd                 |    6 
 man/getCohortId.Rd                           |    5 
 man/getCohortName.Rd                         |    5 
 man/omopColumns.Rd                           |    6 
 tests/testthat/test-classCodelist.R          |   54 
 tests/testthat/test-classSummarisedResult.R  |  523 +++++----
 tests/testthat/test-emptyObjects.R           |    6 
 tests/testthat/test-methodBind.R             |    2 
 tests/testthat/test-methodInsertFromSource.R |   38 
 tests/testthat/test-recordCohortAttrition.R  |  327 +++---
 tests/testthat/test-utilities.R              |  139 +-
 31 files changed, 2899 insertions(+), 2783 deletions(-)

More information about omopgenerics at CRAN
Permanent link

Package midfieldr updated to version 1.0.2 with previous version 1.0.1 dated 2023-07-08

Title: Tools and Methods for Working with MIDFIELD Data in 'R'
Description: Provides tools and demonstrates methods for working with individual undergraduate student-level records (registrar's data) in 'R'. Tools include filters for program codes, data sufficiency, and timely completion. Methods include gathering blocs of records, computing quantitative metrics such as graduation rate, and creating charts to visualize comparisons. 'midfieldr' interacts with practice data provided in 'midfielddata', an R data package available at <https://midfieldr.github.io/midfielddata/>. 'midfieldr' also interacts with the full MIDFIELD database for users who have access. This work is supported by the US National Science Foundation through grant numbers 1545667 and 2142087.
Author: Richard Layton [cre, aut, cph], Russell Long [aut, cph, dtm], Matthew Ohland [aut, cph], Marisa Orr [aut, cph], Susan Lord [aut, cph]
Maintainer: Richard Layton <graphdoctor@gmail.com>

Diff between midfieldr versions 1.0.1 dated 2023-07-08 and 1.0.2 dated 2024-05-16

 DESCRIPTION                                |   20 
 MD5                                        |   79 +--
 NEWS.md                                    |   33 -
 R/add_completion_status.R                  |   30 -
 R/add_data_sufficiency.R                   |   30 -
 R/add_timely_term.R                        |   36 -
 R/data.R                                   |  162 ++-----
 R/filter_cip.R                             |   21 
 R/midfieldr-package.R                      |   23 -
 R/order_multiway.R                         |   33 -
 R/prep_fye_mice.R                          |   38 -
 R/roxygen.R                                |only
 R/same_content.R                           |   17 
 R/select_required.R                        |   36 -
 R/utils.R                                  |   10 
 README.md                                  |   47 --
 build/vignette.rds                         |binary
 inst/WORDLIST                              |    7 
 inst/doc/art-010-planning.html             |   33 -
 inst/doc/art-040-programs.html             |  644 ++++++++++++++---------------
 man/add_completion_status.Rd               |   24 -
 man/add_data_sufficiency.Rd                |   25 -
 man/add_timely_term.Rd                     |   29 -
 man/baseline_mcid.Rd                       |    7 
 man/cip.Rd                                 |    3 
 man/filter_cip.Rd                          |   16 
 man/fye_proxy.Rd                           |   11 
 man/midfieldr-package.Rd                   |   33 +
 man/order_multiway.Rd                      |   30 -
 man/prep_fye_mice.Rd                       |   31 -
 man/rmd/note-midfielddata-and-midfield.Rmd |    4 
 man/rmd/note-nsf-grant.Rmd                 |    2 
 man/same_content.Rd                        |    8 
 man/select_required.Rd                     |   27 -
 man/study_observations.Rd                  |   21 
 man/study_programs.Rd                      |    8 
 man/study_results.Rd                       |   27 -
 man/toy_course.Rd                          |   26 -
 man/toy_degree.Rd                          |   21 
 man/toy_student.Rd                         |   20 
 man/toy_term.Rd                            |   22 
 41 files changed, 734 insertions(+), 960 deletions(-)

More information about midfieldr at CRAN
Permanent link

Package gitlabr updated to version 2.1.0 with previous version 2.0.1 dated 2022-09-13

Title: Access to the 'GitLab' API
Description: Provides R functions to access the API of the project and repository management web application 'GitLab'. For many common tasks (repository file access, issue assignment and status, commenting) convenience wrappers are provided, and in addition the full API can be used by specifying request locations. 'GitLab' is open-source software and can be self-hosted or used on <https://about.gitlab.com>.
Author: Jirka Lewandowski [aut], Sebastien Rochette [aut, cre] , ThinkR [cph]
Maintainer: Sebastien Rochette <sebastienrochettefr@gmail.com>

Diff between gitlabr versions 2.0.1 dated 2022-09-13 and 2.1.0 dated 2024-05-16

 gitlabr-2.0.1/gitlabr/data                                                |only
 gitlabr-2.0.1/gitlabr/inst/doc/a-quick-start-guide-to-gitlabr.R           |only
 gitlabr-2.0.1/gitlabr/inst/doc/a-quick-start-guide-to-gitlabr.Rmd         |only
 gitlabr-2.0.1/gitlabr/inst/doc/a-quick-start-guide-to-gitlabr.html        |only
 gitlabr-2.0.1/gitlabr/inst/doc/c-alternative-connection-to-projects.R     |only
 gitlabr-2.0.1/gitlabr/inst/doc/c-alternative-connection-to-projects.Rmd   |only
 gitlabr-2.0.1/gitlabr/inst/doc/c-alternative-connection-to-projects.html  |only
 gitlabr-2.0.1/gitlabr/inst/doc/d-go-further-understand-and-build.R        |only
 gitlabr-2.0.1/gitlabr/inst/doc/d-go-further-understand-and-build.Rmd      |only
 gitlabr-2.0.1/gitlabr/inst/doc/d-go-further-understand-and-build.html     |only
 gitlabr-2.0.1/gitlabr/inst/doc/z-gitlabr-v2.R                             |only
 gitlabr-2.0.1/gitlabr/inst/doc/z-gitlabr-v2.Rmd                           |only
 gitlabr-2.0.1/gitlabr/inst/doc/z-gitlabr-v2.html                          |only
 gitlabr-2.0.1/gitlabr/man/gitlabci.Rd                                     |only
 gitlabr-2.0.1/gitlabr/man/gitlabr_0_7_renaming.Rd                         |only
 gitlabr-2.0.1/gitlabr/man/gl_builds.Rd                                    |only
 gitlabr-2.0.1/gitlabr/tests/testthat/gitlab-ci.yml                        |only
 gitlabr-2.0.1/gitlabr/vignettes/a-quick-start-guide-to-gitlabr.Rmd        |only
 gitlabr-2.0.1/gitlabr/vignettes/c-alternative-connection-to-projects.Rmd  |only
 gitlabr-2.0.1/gitlabr/vignettes/d-go-further-understand-and-build.Rmd     |only
 gitlabr-2.0.1/gitlabr/vignettes/z-gitlabr-v2.Rmd                          |only
 gitlabr-2.1.0/gitlabr/DESCRIPTION                                         |   33 
 gitlabr-2.1.0/gitlabr/MD5                                                 |  172 ++--
 gitlabr-2.1.0/gitlabr/NAMESPACE                                           |   52 -
 gitlabr-2.1.0/gitlabr/NEWS.md                                             |   44 -
 gitlabr-2.1.0/gitlabr/R/branches.R                                        |   68 +
 gitlabr-2.1.0/gitlabr/R/ci.R                                              |  174 ++--
 gitlabr-2.1.0/gitlabr/R/comments.R                                        |  141 ++-
 gitlabr-2.1.0/gitlabr/R/connect.R                                         |  101 +-
 gitlabr-2.1.0/gitlabr/R/files.R                                           |  231 ++++-
 gitlabr-2.1.0/gitlabr/R/gitlab_api.R                                      |  265 ++++--
 gitlabr-2.1.0/gitlabr/R/global_env.R                                      |   14 
 gitlabr-2.1.0/gitlabr/R/globals.R                                         |   21 
 gitlabr-2.1.0/gitlabr/R/groups.R                                          |only
 gitlabr-2.1.0/gitlabr/R/issues.R                                          |  133 ++-
 gitlabr-2.1.0/gitlabr/R/legacy_headers.R                                  |  293 -------
 gitlabr-2.1.0/gitlabr/R/magrittr_extensions.R                             |    6 
 gitlabr-2.1.0/gitlabr/R/merge_requests.R                                  |   75 +
 gitlabr-2.1.0/gitlabr/R/multilist_to_tibble.R                             |only
 gitlabr-2.1.0/gitlabr/R/projects_and_repos.R                              |  264 ++++--
 gitlabr-2.1.0/gitlabr/R/shiny_module_login.R                              |   89 +-
 gitlabr-2.1.0/gitlabr/README.md                                           |  183 ++--
 gitlabr-2.1.0/gitlabr/build/vignette.rds                                  |binary
 gitlabr-2.1.0/gitlabr/inst/doc/a-gitlabr.R                                |only
 gitlabr-2.1.0/gitlabr/inst/doc/a-gitlabr.Rmd                              |only
 gitlabr-2.1.0/gitlabr/inst/doc/a-gitlabr.html                             |only
 gitlabr-2.1.0/gitlabr/inst/doc/b-projects.R                               |   24 
 gitlabr-2.1.0/gitlabr/inst/doc/b-projects.Rmd                             |   38 
 gitlabr-2.1.0/gitlabr/inst/doc/b-projects.html                            |  190 ++--
 gitlabr-2.1.0/gitlabr/inst/doc/c-build-your-own.R                         |only
 gitlabr-2.1.0/gitlabr/inst/doc/c-build-your-own.Rmd                       |only
 gitlabr-2.1.0/gitlabr/inst/doc/c-build-your-own.html                      |only
 gitlabr-2.1.0/gitlabr/inst/doc/d-pipelines.R                              |only
 gitlabr-2.1.0/gitlabr/inst/doc/d-pipelines.Rmd                            |only
 gitlabr-2.1.0/gitlabr/inst/doc/d-pipelines.html                           |only
 gitlabr-2.1.0/gitlabr/inst/doc/e-alternative-connection.R                 |only
 gitlabr-2.1.0/gitlabr/inst/doc/e-alternative-connection.Rmd               |only
 gitlabr-2.1.0/gitlabr/inst/doc/e-alternative-connection.html              |only
 gitlabr-2.1.0/gitlabr/inst/gitlab-ci/bookdown-production.yml              |  120 ---
 gitlabr-2.1.0/gitlabr/inst/gitlab-ci/bookdown.yml                         |   24 
 gitlabr-2.1.0/gitlabr/inst/gitlab-ci/check-coverage-pkgdown-renv.yml      |  277 +++----
 gitlabr-2.1.0/gitlabr/inst/gitlab-ci/check-coverage-pkgdown.yml           |  263 +++---
 gitlabr-2.1.0/gitlabr/man/branches.Rd                                     |   28 
 gitlabr-2.1.0/gitlabr/man/gitlab.Rd                                       |   74 +
 gitlabr-2.1.0/gitlabr/man/gitlabr-deprecated.Rd                           |  151 ---
 gitlabr-2.1.0/gitlabr/man/gitlabr-package.Rd                              |   14 
 gitlabr-2.1.0/gitlabr/man/gl_archive.Rd                                   |    5 
 gitlabr-2.1.0/gitlabr/man/gl_comments.Rd                                  |   21 
 gitlabr-2.1.0/gitlabr/man/gl_connection.Rd                                |   24 
 gitlabr-2.1.0/gitlabr/man/gl_create_merge_request.Rd                      |   26 
 gitlabr-2.1.0/gitlabr/man/gl_get_commits.Rd                               |    3 
 gitlabr-2.1.0/gitlabr/man/gl_get_group_id.Rd                              |only
 gitlabr-2.1.0/gitlabr/man/gl_get_project_id.Rd                            |    6 
 gitlabr-2.1.0/gitlabr/man/gl_group_req.Rd                                 |only
 gitlabr-2.1.0/gitlabr/man/gl_list_files.Rd                                |only
 gitlabr-2.1.0/gitlabr/man/gl_list_group_members.Rd                        |only
 gitlabr-2.1.0/gitlabr/man/gl_list_groups.Rd                               |only
 gitlabr-2.1.0/gitlabr/man/gl_list_issues.Rd                               |   19 
 gitlabr-2.1.0/gitlabr/man/gl_list_project_members.Rd                      |only
 gitlabr-2.1.0/gitlabr/man/gl_list_projects.Rd                             |    5 
 gitlabr-2.1.0/gitlabr/man/gl_new_group.Rd                                 |only
 gitlabr-2.1.0/gitlabr/man/gl_new_issue.Rd                                 |   10 
 gitlabr-2.1.0/gitlabr/man/gl_new_project.Rd                               |    5 
 gitlabr-2.1.0/gitlabr/man/gl_pipelines.Rd                                 |only
 gitlabr-2.1.0/gitlabr/man/gl_proj_req.Rd                                  |    5 
 gitlabr-2.1.0/gitlabr/man/gl_repository.Rd                                |   36 
 gitlabr-2.1.0/gitlabr/man/gl_shiny_login.Rd                               |    2 
 gitlabr-2.1.0/gitlabr/man/gl_to_issue_id.Rd                               |    3 
 gitlabr-2.1.0/gitlabr/man/multilist_to_tibble.Rd                          |only
 gitlabr-2.1.0/gitlabr/man/onefile.Rd                                      |   11 
 gitlabr-2.1.0/gitlabr/man/use_gitlab_ci.Rd                                |   33 
 gitlabr-2.1.0/gitlabr/tests/testthat.R                                    |   14 
 gitlabr-2.1.0/gitlabr/tests/testthat/gitlab-ci-bookdown-production.yml    |only
 gitlabr-2.1.0/gitlabr/tests/testthat/gitlab-ci-check-coverage-pkgdown.yml |only
 gitlabr-2.1.0/gitlabr/tests/testthat/helper.R                             |   15 
 gitlabr-2.1.0/gitlabr/tests/testthat/test_branches.R                      |   14 
 gitlabr-2.1.0/gitlabr/tests/testthat/test_ci.R                            |   45 -
 gitlabr-2.1.0/gitlabr/tests/testthat/test_comments.R                      |   29 
 gitlabr-2.1.0/gitlabr/tests/testthat/test_connection_env.R                |  265 +++---
 gitlabr-2.1.0/gitlabr/tests/testthat/test_files.R                         |  238 +++++-
 gitlabr-2.1.0/gitlabr/tests/testthat/test_gitlab_api.R                    |  392 ++++++----
 gitlabr-2.1.0/gitlabr/tests/testthat/test_groups.R                        |only
 gitlabr-2.1.0/gitlabr/tests/testthat/test_issues.R                        |   18 
 gitlabr-2.1.0/gitlabr/tests/testthat/test_login_module.R                  |   31 
 gitlabr-2.1.0/gitlabr/tests/testthat/test_merge_requests.R                |   15 
 gitlabr-2.1.0/gitlabr/tests/testthat/test_multilist_to_tibble.R           |only
 gitlabr-2.1.0/gitlabr/tests/testthat/test_pagination.R                    |   98 ++
 gitlabr-2.1.0/gitlabr/tests/testthat/test_projects_repos.R                |   52 -
 gitlabr-2.1.0/gitlabr/vignettes/a-gitlabr.Rmd                             |only
 gitlabr-2.1.0/gitlabr/vignettes/b-projects.Rmd                            |   38 
 gitlabr-2.1.0/gitlabr/vignettes/c-build-your-own.Rmd                      |only
 gitlabr-2.1.0/gitlabr/vignettes/d-pipelines.Rmd                           |only
 gitlabr-2.1.0/gitlabr/vignettes/e-alternative-connection.Rmd              |only
 113 files changed, 2776 insertions(+), 2264 deletions(-)

More information about gitlabr at CRAN
Permanent link


Built and running on Debian GNU/Linux using R, littler and blosxom. Styled with Bootstrap.