Title: Heterogeneous Treatment Effects in Regression Discontinuity
Designs
Description: Understanding heterogeneous causal effects based on pretreatment covariates is a crucial step in modern empirical work in data science. Building on the recent developments in Calonico et al (2025) <https://rdpackages.github.io/references/Calonico-Cattaneo-Farrell-Palomba-Titiunik_2025_HTERD.pdf>, this package provides tools for estimation and inference of heterogeneous treatment effects in Regression Discontinuity (RD) Designs. The package includes two main commands: 'rdhte' to conduct estimation and robust bias-corrected inference for conditional RD treatment effects (given choice of bandwidth parameter); and 'rdbwhte', which implements automatic bandwidth selection methods.
Author: Sebastian Calonico [aut, cre],
Matias D. Cattaneo [aut],
Max H. Farrell [aut],
Filippo Palomba [aut],
Rocio Titiunik [aut]
Maintainer: Sebastian Calonico <scalonico@ucdavis.edu>
Diff between rdhte versions 0.0.1 dated 2025-03-25 and 0.0.2 dated 2025-04-03
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- R/rdbwhte.R | 2 +- R/rdhte-package.R | 2 +- R/rdhte.R | 6 +++--- man/rdbwhte.Rd | 2 +- man/rdhte-package.Rd | 2 +- man/rdhte.Rd | 2 +- 8 files changed, 18 insertions(+), 18 deletions(-)
Title: Printing Floating Point Numbers in a Human-Friendly Format
Description: Print vectors (and data frames) of floating point numbers
using a non-scientific format optimized for human readers. Vectors of
numbers are rounded using significant digits, aligned at the decimal
point, and all zeros trailing the decimal point are dropped. See:
Wright (2016). Lucid: An R Package for Pretty-Printing Floating Point
Numbers. In JSM Proceedings, Statistical Computing Section.
Alexandria, VA: American Statistical Association. 2270-2279.
Author: Kevin Wright [aut, cre, cph]
Maintainer: Kevin Wright <kw.stat@gmail.com>
Diff between lucid versions 1.8 dated 2021-04-16 and 1.9 dated 2025-04-03
lucid-1.8/lucid/tests/testthat/test_lucid.R |only lucid-1.8/lucid/tests/testthat/test_vc.R |only lucid-1.9/lucid/DESCRIPTION | 36 - lucid-1.9/lucid/LICENSE |only lucid-1.9/lucid/MD5 | 29 - lucid-1.9/lucid/NEWS.md | 41 + lucid-1.9/lucid/R/lucid.R | 2 lucid-1.9/lucid/build/vignette.rds |binary lucid-1.9/lucid/inst/doc/lucid_examples.R | 69 +- lucid-1.9/lucid/inst/doc/lucid_examples.Rmd | 23 lucid-1.9/lucid/inst/doc/lucid_examples.html | 735 ++++++++++++++++++++------- lucid-1.9/lucid/man/antibiotic.Rd | 160 ++--- lucid-1.9/lucid/man/lucid.Rd | 186 +++--- lucid-1.9/lucid/man/vc.Rd | 168 +++--- lucid-1.9/lucid/tests/testthat/test_lucid.r |only lucid-1.9/lucid/tests/testthat/test_vc.r |only lucid-1.9/lucid/vignettes/lucid.bib | 2 lucid-1.9/lucid/vignettes/lucid_examples.Rmd | 23 18 files changed, 919 insertions(+), 555 deletions(-)
Title: Relative Risk Regression Using the Log-Binomial Model
Description: Methods for fitting log-link GLMs and GAMs to binomial data,
including EM-type algorithms with more stable convergence properties than standard methods.
Author: Mark W. Donoghoe [aut, cre] ,
Ian C. Marschner [ths] ,
Alexandra C. Gillett [ctb] ,
The R Core Team [cph]
Maintainer: Mark W. Donoghoe <markdonoghoe@gmail.com>
Diff between logbin versions 2.0.5 dated 2021-08-09 and 2.0.6 dated 2025-04-03
logbin-2.0.5/logbin/R/contr.isotonic.rev.r |only logbin-2.0.5/logbin/man/contr.isotonic.rev.Rd |only logbin-2.0.5/logbin/man/interpret.logbin.smooth.Rd |only logbin-2.0.6/logbin/DESCRIPTION | 17 ++++-- logbin-2.0.6/logbin/MD5 | 37 ++++++++------ logbin-2.0.6/logbin/NAMESPACE | 4 - logbin-2.0.6/logbin/NEWS.md | 13 ++++- logbin-2.0.6/logbin/R/anova.logbin.r | 21 ++++++++ logbin-2.0.6/logbin/R/anova.logbinlist.r | 21 ++++++++ logbin-2.0.6/logbin/R/nplbin.r | 2 logbin-2.0.6/logbin/R/predict.logbin.r | 22 ++++++++ logbin-2.0.6/logbin/R/predict.logbin.smooth.r | 2 logbin-2.0.6/logbin/R/summary.logbin.r | 53 ++++++++++++++------- logbin-2.0.6/logbin/inst/CITATION | 37 +++++++------- logbin-2.0.6/logbin/man/anova.logbin.Rd | 4 - logbin-2.0.6/logbin/man/logbin-package.Rd | 6 +- logbin-2.0.6/logbin/man/logbin.smooth.Rd | 2 logbin-2.0.6/logbin/tests |only 18 files changed, 172 insertions(+), 69 deletions(-)
Title: Conditional Akaike Information Criterion for 'lme4' and 'nlme'
Description: Provides functions for the estimation of the conditional Akaike
information in generalized mixed-effect models fitted with (g)lmer()
from 'lme4', lme() from 'nlme' and gamm() from 'mgcv'.
For a manual on how to use 'cAIC4', see Saefken et al. (2021) <doi:10.18637/jss.v099.i08>.
Author: Benjamin Saefken [aut],
David Ruegamer [aut, cre],
Philipp Baumann [aut],
Rene-Marcel Kruse [aut],
Sonja Greven [aut],
Thomas Kneib [aut]
Maintainer: David Ruegamer <david.ruegamer@gmail.com>
Diff between cAIC4 versions 1.0 dated 2021-09-22 and 1.1 dated 2025-04-03
DESCRIPTION | 27 ++++++-- MD5 | 30 +++++---- NAMESPACE | 4 + R/bcMer.R | 122 +++++++++++++++++++-------------------- R/biasCorrectionBernoulli.R | 2 R/biasCorrectionGaussian.R | 62 +++++++++---------- R/cAIC.R | 5 - R/deleteZeroComponents.R | 4 - R/getModelComponents.R | 26 ++++++++ R/helperfuns_lme.R | 8 +- R/helperfuns_stepcAIC.R | 5 - build/partial.rdb |binary man/cAIC.Rd | 2 man/deleteZeroComponents.Rd | 4 - man/family.lme.Rd |only man/getModelComponents.Rd |only man/getModelComponents.lme.Rd |only man/getModelComponents.merMod.Rd |only 18 files changed, 176 insertions(+), 125 deletions(-)
Title: Causal Moderated Mediation Analysis
Description: Causal moderated mediation analysis using the methods proposed by Qin and Wang (2023) <doi:10.3758/s13428-023-02095-4>. Causal moderated mediation analysis is crucial for investigating how, for whom, and where a treatment is effective by assessing the heterogeneity of mediation mechanism across individuals and contexts. This package enables researchers to estimate and test the conditional and moderated mediation effects, assess their sensitivity to unmeasured pre-treatment confounding, and visualize the results. The package is built based on the quasi-Bayesian Monte Carlo method, because it has relatively better performance at small sample sizes, and its running speed is the fastest. The package is applicable to a treatment of any scale, a binary or continuous mediator, a binary or continuous outcome, and one or more moderators of any scale.
Author: Xu Qin [aut, cre, cph],
Lijuan Wang [ctb]
Maintainer: Xu Qin <xuqin@pitt.edu>
Diff between moderate.mediation versions 0.0.10 dated 2024-05-23 and 0.0.11 dated 2025-04-03
DESCRIPTION | 10 +++++----- MD5 | 4 ++-- R/moderate.mediation.R | 10 ++++++++++ 3 files changed, 17 insertions(+), 7 deletions(-)
More information about moderate.mediation at CRAN
Permanent link
Title: Propensity Score Matching of Non-Binary Treatments
Description: Propensity score matching for non-binary treatments.
Author: Jason Bryer [aut, cre]
Maintainer: Jason Bryer <jason@bryer.org>
Diff between TriMatch versions 0.9.9 dated 2017-12-05 and 1.0.0 dated 2025-04-03
TriMatch-0.9.9/TriMatch/NEWS |only TriMatch-1.0.0/TriMatch/DESCRIPTION | 36 +++-- TriMatch-1.0.0/TriMatch/MD5 | 106 ++++++++-------- TriMatch-1.0.0/TriMatch/NEWS.md |only TriMatch-1.0.0/TriMatch/R/TriMatch-package.R | 3 TriMatch-1.0.0/TriMatch/R/as.data.frame.list.R | 2 TriMatch-1.0.0/TriMatch/R/covariateBalance.R | 4 TriMatch-1.0.0/TriMatch/R/merge.triangle.matches.R | 2 TriMatch-1.0.0/TriMatch/R/merge.triangle.psa.R | 4 TriMatch-1.0.0/TriMatch/R/plot.balance.R | 20 +-- TriMatch-1.0.0/TriMatch/R/plot.boxdiff.R | 2 TriMatch-1.0.0/TriMatch/R/plot.distances.R | 2 TriMatch-1.0.0/TriMatch/R/plot.loess.R | 14 +- TriMatch-1.0.0/TriMatch/R/plot.multibalance.R | 10 - TriMatch-1.0.0/TriMatch/R/plot.parallel.R | 2 TriMatch-1.0.0/TriMatch/R/plot.triangle.matches.R | 20 +-- TriMatch-1.0.0/TriMatch/R/plot.triangle.psa.R | 8 - TriMatch-1.0.0/TriMatch/R/summary.triangle.matches.R | 13 - TriMatch-1.0.0/TriMatch/R/summary.triangle.psa.R | 4 TriMatch-1.0.0/TriMatch/R/triangle.match.R | 16 +- TriMatch-1.0.0/TriMatch/R/triangle.psa.R | 2 TriMatch-1.0.0/TriMatch/R/unmatched.R | 12 - TriMatch-1.0.0/TriMatch/build |only TriMatch-1.0.0/TriMatch/inst |only TriMatch-1.0.0/TriMatch/man/OneToN.Rd | 2 TriMatch-1.0.0/TriMatch/man/as.data.frame.list.Rd | 2 TriMatch-1.0.0/TriMatch/man/balance.plot.Rd | 25 ++- TriMatch-1.0.0/TriMatch/man/boxdiff.plot.Rd | 11 + TriMatch-1.0.0/TriMatch/man/covariateBalance.Rd | 26 +++ TriMatch-1.0.0/TriMatch/man/data.frame.to.list.Rd | 30 ++++ TriMatch-1.0.0/TriMatch/man/distances.plot.Rd | 2 TriMatch-1.0.0/TriMatch/man/figures |only TriMatch-1.0.0/TriMatch/man/loess3.plot.Rd | 31 +++- TriMatch-1.0.0/TriMatch/man/maximumTreat.Rd | 2 TriMatch-1.0.0/TriMatch/man/merge.triangle.matches.Rd | 2 TriMatch-1.0.0/TriMatch/man/merge.triangle.psa.Rd | 4 TriMatch-1.0.0/TriMatch/man/multibalance.plot.Rd | 6 TriMatch-1.0.0/TriMatch/man/nmes.Rd | 4 TriMatch-1.0.0/TriMatch/man/parallel.plot.Rd | 2 TriMatch-1.0.0/TriMatch/man/plot.balance.plots.Rd | 5 TriMatch-1.0.0/TriMatch/man/plot.triangle.matches.Rd | 34 +++-- TriMatch-1.0.0/TriMatch/man/plot.triangle.psa.Rd | 20 ++- TriMatch-1.0.0/TriMatch/man/print.balance.plots.Rd | 10 - TriMatch-1.0.0/TriMatch/man/print.triangle.plot.Rd | 10 - TriMatch-1.0.0/TriMatch/man/print.trimatch.summary.Rd | 8 - TriMatch-1.0.0/TriMatch/man/summary.balance.plots.Rd | 4 TriMatch-1.0.0/TriMatch/man/summary.triangle.matches.Rd | 8 - TriMatch-1.0.0/TriMatch/man/summary.triangle.psa.Rd | 4 TriMatch-1.0.0/TriMatch/man/summary.unmatched.Rd | 2 TriMatch-1.0.0/TriMatch/man/trimatch.Rd | 23 ++- TriMatch-1.0.0/TriMatch/man/trimatch.apply2.Rd | 2 TriMatch-1.0.0/TriMatch/man/trips.Rd | 13 + TriMatch-1.0.0/TriMatch/man/tutoring.Rd | 4 TriMatch-1.0.0/TriMatch/man/unmatched.Rd | 10 - TriMatch-1.0.0/TriMatch/vignettes |only 55 files changed, 350 insertions(+), 238 deletions(-)
Title: Simple Framework for Simple Automation
Description: Build a project framework for users with
access to only the most basic of automation tools.
Author: Alexander Senetcky [aut, cre, cph]
Maintainer: Alexander Senetcky <asenetcky@gmail.com>
Diff between strata versions 1.4.3 dated 2025-03-05 and 1.4.5 dated 2025-04-03
DESCRIPTION | 6 MD5 | 37 ++-- NEWS.md | 4 R/build-core.R | 24 +- R/build-quick.R | 7 R/log-core.R | 42 ++-- R/main-utils.R | 112 ++++-------- R/survey-core.R | 1 R/survey-utils.R | 6 R/toml-io.R | 18 - R/toml-utils.R | 7 README.md | 346 +++++++++++++++++++------------------- man/format_timestamp.Rd |only tests/testthat/test-adhoc-core.R | 16 - tests/testthat/test-build-core.R | 12 - tests/testthat/test-build-quick.R | 10 - tests/testthat/test-main-core.R | 9 tests/testthat/test-main-utils.R | 58 +++++- tests/testthat/test-survey-core.R | 3 tests/testthat/test-toml-utils.R | 2 20 files changed, 386 insertions(+), 334 deletions(-)
Title: Quality Improvement Charts
Description: Functions for making run charts
[Anhoej, Olesen (2014) <doi:10.1371/journal.pone.0113825>] and basic
Shewhart control charts [Mohammed, Worthington, Woodall (2008)
<doi:10.1136/qshc.2004.012047>] for measure and count data.
The main function, qic(), creates run and control charts and has a
simple interface with a rich set of options to control data analysis
and plotting, including options for automatic data aggregation by
subgroups, easy analysis of before-and-after data, exclusion of one
or more data points from analysis, and splitting charts into
sequential time periods.
Missing values and empty subgroups are handled gracefully.
Author: Jacob Anhoej [aut, cre],
Timo Roeder [ctb]
Maintainer: Jacob Anhoej <jacob@anhoej.net>
Diff between qicharts versions 0.5.8 dated 2021-04-20 and 0.5.10 dated 2025-04-03
DESCRIPTION | 8 MD5 | 14 NEWS | 8 R/trc.R | 8 build/vignette.rds |binary inst/doc/controlcharts.html | 1059 ++++++++++++++++++++++++++++++-------------- inst/doc/runcharts.html | 576 +++++++++++++++++------ man/trc.Rd | 8 8 files changed, 1175 insertions(+), 506 deletions(-)
Title: Quantile Regression Coefficients Modeling
Description: Parametric modeling of quantile regression coefficient functions.
Author: Paolo Frumento [aut, cre]
Maintainer: Paolo Frumento <paolo.frumento@unipi.it>
Diff between qrcm versions 3.1 dated 2024-02-13 and 3.2 dated 2025-04-03
DESCRIPTION | 14 +++++++++----- MD5 | 12 ++++++------ NEWS.md | 9 +++------ R/iqr1_fit.R | 6 ++++-- man/iqr.Rd | 3 +-- man/qrcm-package.Rd | 8 ++++---- man/test.fit.iqr.Rd | 6 +++--- 7 files changed, 30 insertions(+), 28 deletions(-)
Title: Inference for Panel Partially Observed Markov Processes
Description: Data analysis based on panel partially-observed Markov process (PanelPOMP) models. To implement such models, simulate them and fit them to panel data, 'panelPomp' extends some of the facilities provided for time series data by the 'pomp' package. Implemented methods include filtering (panel particle filtering) and maximum likelihood estimation (Panel Iterated Filtering) as proposed in Breto, Ionides and King (2020) "Panel Data Analysis via Mechanistic Models" <doi:10.1080/01621459.2019.1604367>.
Author: Carles Breto [aut] ,
Edward L. Ionides [aut] ,
Aaron A. King [aut] ,
Jesse Wheeler [aut, cre] ,
Aaron Abkemeier [ctb]
Maintainer: Jesse Wheeler <jeswheel@umich.edu>
Diff between panelPomp versions 1.5.0.0 dated 2024-12-08 and 1.6.0.0 dated 2025-04-03
panelPomp-1.5.0.0/panelPomp/man/unitlogLik-deprecated.Rd |only panelPomp-1.5.0.0/panelPomp/man/unitlogLik-pfilterd.ppomp-method.Rd |only panelPomp-1.6.0.0/panelPomp/DESCRIPTION | 10 +- panelPomp-1.6.0.0/panelPomp/MD5 | 34 +++++---- panelPomp-1.6.0.0/panelPomp/NAMESPACE | 3 panelPomp-1.6.0.0/panelPomp/R/generics.R | 35 ---------- panelPomp-1.6.0.0/panelPomp/R/mif2.R | 28 +++++++- panelPomp-1.6.0.0/panelPomp/R/panelMeasles.R | 3 panelPomp-1.6.0.0/panelPomp/R/panelPomp-package.R | 13 +-- panelPomp-1.6.0.0/panelPomp/R/pfilter_methods.R | 25 ------- panelPomp-1.6.0.0/panelPomp/build/partial.rdb |binary panelPomp-1.6.0.0/panelPomp/build/vignette.rds |binary panelPomp-1.6.0.0/panelPomp/inst/NEWS | 12 +++ panelPomp-1.6.0.0/panelPomp/inst/NEWS.Rd | 7 ++ panelPomp-1.6.0.0/panelPomp/man/dot-modifyOther.Rd |only panelPomp-1.6.0.0/panelPomp/man/dot-modifySelf.Rd |only panelPomp-1.6.0.0/panelPomp/src |only panelPomp-1.6.0.0/panelPomp/tests/pfilter_methods.R | 2 panelPomp-1.6.0.0/panelPomp/tests/pfilter_methods.Rout.save | 15 ---- panelPomp-1.6.0.0/panelPomp/tests/pparamArrayMods.R |only panelPomp-1.6.0.0/panelPomp/tests/pparamArrayMods.Rout.save |only 21 files changed, 78 insertions(+), 109 deletions(-)
Title: Finding Recurrent DNA Copy Number Alterations and Differences
Description: In tumor tissue, underlying genomic instability can lead to DNA copy number alterations,
e.g., copy number gains or losses. Sporadic copy number alterations occur randomly throughout the
genome, whereas recurrent alterations are observed in the same genomic region across multiple
independent samples, perhaps because they provide a selective growth advantage. Here we use
cyclic shift permutations to identify recurrent copy number alterations in a single cohort or
recurrent copy number differences in two cohorts based on a common set of genomic markers.
Additional functionality is provided to perform downstream analyses, including the creation of
summary files and graphics. DiNAMIC.Duo builds upon the original DiNAMIC package of Walter et al.
(2011) <doi:10.1093/bioinformatics/btq717> and leverages the theory developed in Walter et al.
(2015) <doi:10.1093/biomet/asv046>. An article describing DiNAMIC.Duo by Walter et al. (2022)
can be found at <doi: 10.1093/bioinformatics/ [...truncated...]
Author: Vonn Walter [aut, cre] ,
Hyo Young Choi [aut] ,
Xiaobei Zhao [aut] ,
Yan Gao [aut] ,
David Neil Hayes [aut]
Maintainer: Vonn Walter <vwalter1@pennstatehealth.psu.edu>
Diff between DiNAMIC.Duo versions 1.0.2 dated 2023-03-02 and 1.0.3 dated 2025-04-03
DESCRIPTION | 10 +- MD5 | 18 ++-- NAMESPACE | 2 NEWS.md | 11 ++- R/dataPrep.R | 142 +++++++++++++++++++++------------------ R/findNull.R |only build/vignette.rds |binary data/DiNAMIC.Duo.RData |binary inst/doc/DiNAMICDuo_vignette.pdf |binary man/dataPrep.Rd | 12 ++- man/findNull.Rd |only 11 files changed, 115 insertions(+), 80 deletions(-)
Title: Fast and Memory Efficient Fitting of Linear Models with
High-Dimensional Fixed Effects
Description: Fast and user-friendly estimation of generalized linear models with
multiple fixed effects and cluster the standard errors. The method to obtain
the estimated fixed-effects coefficients is based on Stammann (2018)
<doi:10.48550/arXiv.1707.01815> and Gaure (2013)
<doi:10.1016/j.csda.2013.03.024>.
Author: Mauricio Vargas Sepulveda [aut, cre]
,
Yoto Yotov [ctb]
Maintainer: Mauricio Vargas Sepulveda <m.sepulveda@mail.utoronto.ca>
Diff between capybara versions 0.9.1 dated 2025-03-25 and 0.9.3 dated 2025-04-03
DESCRIPTION | 15 +++-- MD5 | 52 +++++++++--------- NAMESPACE | 2 NEWS.md | 11 +++ R/apes.R | 4 - R/autoplot.R | 4 - R/bias_corr.R | 4 - R/cpp11.R | 4 - R/feglm_control.R | 14 ++++ R/feglm_helpers.R | 2 R/felm_helpers.R | 2 R/generics_coef.R | 8 +- R/generics_confint.R | 2 R/generics_glance.R | 2 R/generics_print.R | 14 ++++ R/generics_summary.R | 44 +++++++-------- R/generics_tidy.R | 2 R/summary_table.R |only README.md | 67 +++++++++++++++-------- man/capybara-package.Rd | 5 + man/feglm_control.Rd | 5 + man/summary_table.Rd |only src/00_main.h | 2 src/02_center_variables.cpp | 93 +++++++++++++++++++++++++------- src/03_lm_fit.cpp | 17 ++--- src/04_glm_fit.cpp | 127 +++++++++++++++++++++----------------------- src/05_glm_offset_fit.cpp | 5 + src/cpp11.cpp | 8 +- 28 files changed, 323 insertions(+), 192 deletions(-)
Title: Fast and Robust Multi-Scale Graph Clustering
Description: A graph community detection algorithm that aims to be performant
on large graphs and robust, returning consistent results across runs.
SpeakEasy 2 (SE2), the underlying algorithm, is described in Chris Gaiteri,
David R. Connell & Faraz A. Sultan et al. (2023)
<doi:10.1186/s13059-023-03062-0>. The core algorithm is written in 'C',
providing speed and keeping the memory requirements low. This implementation
can take advantage of multiple computing cores without increasing memory
usage. SE2 can detect community structure across scales, making it a good
choice for biological data, which often has hierarchical structure. Graphs
can be passed to the algorithm as adjacency matrices using base 'R'
matrices, the 'Matrix' library, 'igraph' graphs, or any data that can be
coerced into a matrix.
Author: David Connell [aut, cre, cph] ,
Chris Gaiteri [cph] ,
Gabor Csardi [cph, ctb] ,
Tamas Nepusz [cph, ctb] ,
Szabolcs Horvat [cph, ctb] ,
Vincent Traag [cph, ctb] ,
Fabio Zanini [cph, ctb] ,
Daniel Noom [cph, ctb] ,
The igraph development team [cph] ,
F [...truncated...]
Maintainer: David Connell <david32@dcon.addy.io>
Diff between speakeasyR versions 0.1.4 dated 2024-09-24 and 0.1.5 dated 2025-04-03
DESCRIPTION | 6 MD5 | 52 ++-- NEWS.md | 10 configure | 2 configure.ac | 2 inst/doc/speakeasyR.html | 20 - src/se2/CMakeLists.txt | 6 src/se2/include/speak_easy_2.h | 52 ++-- src/se2/src/speakeasy2/se2_core.c | 361 +++++++++++++--------------- src/se2/src/speakeasy2/se2_error_handling.h | 114 ++++---- src/se2/src/speakeasy2/se2_knn_graph.c | 58 ++-- src/se2/src/speakeasy2/se2_label.c | 130 +++++----- src/se2/src/speakeasy2/se2_label.h | 32 +- src/se2/src/speakeasy2/se2_modes.c | 170 ++++++------- src/se2/src/speakeasy2/se2_modes.h | 26 +- src/se2/src/speakeasy2/se2_neighborlist.c | 52 ++-- src/se2/src/speakeasy2/se2_neighborlist.h | 13 - src/se2/src/speakeasy2/se2_order_nodes.c | 22 - src/se2/src/speakeasy2/se2_partitions.c | 240 ++++++++++-------- src/se2/src/speakeasy2/se2_partitions.h | 106 +++----- src/se2/src/speakeasy2/se2_random.c | 15 - src/se2/src/speakeasy2/se2_random.h | 8 src/se2/src/speakeasy2/se2_reweigh_graph.c | 79 ++---- src/se2/src/speakeasy2/se2_reweigh_graph.h | 2 src/se2/src/speakeasy2/se2_seeding.c | 9 src/se2/src/speakeasy2/se2_seeding.h | 5 src/se2/vendor/CMakeLists.txt | 39 +-- 27 files changed, 831 insertions(+), 800 deletions(-)
Title: Import and Manipulate 'ForestGEO' Data
Description: To help you access, transform, analyze, and visualize
'ForestGEO' data, we developed a collection of R packages
(<https://forestgeo.github.io/fgeo/>). This package, in particular,
helps you to easily import, filter, and modify 'ForestGEO' data. To
learn more about 'ForestGEO' visit <https://forestgeo.si.edu/>.
Author: Mauro Lepore [aut, ctr, cre] ,
Richard Condit [aut],
Suzanne Lao [aut],
Anudeep Singh [aut],
CTFS-ForestGEO [cph, fnd]
Maintainer: Mauro Lepore <maurolepore@gmail.com>
Diff between fgeo.tool versions 1.2.9 dated 2024-01-27 and 1.2.10 dated 2025-04-03
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- NEWS.md | 4 ++++ R/read_fgeo.R | 2 +- R/utils-tidy-eval.R | 2 +- README.md | 2 +- man/tidyeval.Rd | 2 +- man/type_vft.Rd | 2 +- 8 files changed, 20 insertions(+), 16 deletions(-)
Title: Multilevel Modeling of Dendroclimatical Fluctuations
Description: Multilevel ecological data series (MEDS) are sequences of observations ordered according to temporal/spatial hierarchies that are defined by sample designs, with sample variability confined to ecological factors. Dendroclimatic MEDS of tree rings and climate are modeled into normalized fluctuations of tree growth and aridity. Modeled fluctuations (model frames) are compared with Mantel correlograms on multiple levels defined by sample design. Package implementation can be understood by running examples in modelFrame(), and muleMan() functions.
Author: Wilson Lara [aut, cre] ,
Felipe Bravo [aut]
Maintainer: Wilson Lara <wilarhen@gmail.com>
Diff between BIOdry versions 0.9 dated 2022-05-02 and 0.9.1 dated 2025-04-03
DESCRIPTION | 22 +++-- MD5 | 66 +++++++-------- NEWS | 152 ++++++++++++++++------------------- R/anova.modelFrame.R | 16 +-- R/frametoLme.R | 14 +-- R/lmeForm.R | 2 R/modelFrame.R | 8 - R/muleMan.R | 15 +-- R/ringApply.R | 2 R/shiftFrame.R | 6 - R/summary.modelFrame.R | 2 build/partial.rdb |binary man/amod.Rd | 109 ++++++++++++------------- man/anova.modelFrame.Rd | 158 ++++++++++++++++++------------------ man/arguSelect.Rd | 145 +++++++++++++++++---------------- man/cClass.Rd | 66 +++++++-------- man/frametoLme.Rd | 188 ++++++++++++++++++++++--------------------- man/levexp.Rd | 62 +++++++------- man/lmeForm.Rd | 108 ++++++++++++------------- man/mUnits.Rd | 69 ++++++++-------- man/modelFrame.Rd | 197 +++++++++++++++++++++++----------------------- man/moveYr.Rd | 86 ++++++++++---------- man/muleMan.Rd | 152 +++++++++++++++++------------------ man/plot.modelFrame.Rd | 80 +++++++++--------- man/plot.muleMan.Rd | 114 +++++++++++++------------- man/plot.wlai.Rd | 88 ++++++++++---------- man/ringApply.Rd | 179 +++++++++++++++++++++-------------------- man/rtimes.Rd | 70 ++++++++-------- man/scacum.Rd | 73 ++++++++--------- man/shiftFrame.Rd | 117 +++++++++++++-------------- man/slitFrame.Rd | 77 +++++++++-------- man/summary.modelFrame.Rd | 83 +++++++++---------- man/tdForm.Rd | 108 ++++++++++++------------- man/wlai.Rd | 94 ++++++++++----------- 34 files changed, 1376 insertions(+), 1352 deletions(-)
Title: Analyze ForestGEO Data
Description: To help you access, transform, analyze, and
visualize ForestGEO data, we developed a collection of R packages
(<https://forestgeo.github.io/fgeo/>). This package, in particular,
helps you to implement analyses of plot species distributions,
topography, demography, and biomass. It also includes a torus
translation test to determine habitat associations of tree species as
described by Zuleta et al. (2018) <doi:10.1007/s11104-018-3878-0>. To
learn more about ForestGEO visit <https://forestgeo.si.edu/>.
Author: Mauro Lepore [aut, ctr, cre] ,
Gabriel Arellano [aut, rev],
Richard Condit [aut],
Matteo Detto [aut],
Kyle Harms [aut],
Suzanne Lao [aut, rev],
KangMin Ngo [rev],
Haley Overstreet [rev],
Sabrina Russo [aut, rev],
Daniel Zuleta [aut, rev],
CTFS-Forest [...truncated...]
Maintainer: Mauro Lepore <maurolepore@gmail.com>
Diff between fgeo.analyze versions 1.1.14 dated 2020-12-05 and 1.1.15 dated 2025-04-03
DESCRIPTION | 9 - MD5 | 21 +-- NEWS.md | 8 + R/abundance.R | 6 R/as_tibble.R | 2 R/tt_test.R | 4 README.md | 283 ++++++++++++++++++++++++++++++++++++-------- build |only man/abundance.Rd | 6 man/fgeo.analyze-package.Rd | 11 - man/reexports.Rd | 2 man/tt_test.Rd | 4 12 files changed, 273 insertions(+), 83 deletions(-)
Title: A Dipping Sauce for Data Analysis and Visualizations
Description: Works as an "add-on" to packages like 'shiny', 'future', as well as
'rlang', and provides utility functions. Just like dipping sauce adding
flavors to potato chips or pita bread, 'dipsaus' for data analysis and
visualizations adds handy functions and enhancements to popular packages.
The goal is to provide simple solutions that are frequently asked for
online, such as how to synchronize 'shiny' inputs without freezing the app,
or how to get memory size on 'Linux' or 'MacOS' system. The enhancements
roughly fall into these four categories: 1. 'shiny' input widgets; 2.
high-performance computing using the 'future' package; 3.
modify R calls and convert among numbers, strings, and other objects. 4.
utility functions to get system information such like CPU chip-set, memory
limit, etc.
Author: Zhengjia Wang [aut, cre],
John Magnotti [ctb] ,
Xiang Zhang [ctb]
Maintainer: Zhengjia Wang <dipterix.wang@gmail.com>
Diff between dipsaus versions 0.3.0 dated 2024-12-17 and 0.3.1 dated 2025-04-03
DESCRIPTION | 8 +++--- MD5 | 44 ++++++++++++++++----------------- NEWS.md | 10 +++++++ R/parallels-future.R | 8 +++--- R/parallels.R | 8 +++--- R/shiny-actionbutton-styled.R | 5 +++ R/shiny-compoundInput2.R | 6 +++- R/shiny-fancyFileInput.R | 11 ++++---- R/shiny-setInputs.R | 3 +- R/shiny-swal-alert.R | 3 -- R/shortcuts.R | 2 - R/systems.R | 5 +++ R/zzz-finalizers.R | 21 +++++++++------ R/zzz.R | 2 - build/vignette.rds |binary inst/doc/r_expr_addons.html | 8 +++--- inst/doc/shiny_customized_widgets.html | 2 - inst/doc/utility_functions.html | 8 +++--- inst/shiny-addons/dipsaus/dipsaus.css | 2 - man/shared_finalizer.Rd | 8 +++--- man/shiny_alert2.Rd | 2 - src/utils.cpp | 36 ++++++++++++++++++--------- tests/testthat/test.finalizers.R | 2 - 23 files changed, 122 insertions(+), 82 deletions(-)
Title: Rule- And Instance-Based Regression Modeling
Description: Regression modeling using rules with added instance-based
corrections.
Author: Max Kuhn [aut, cre],
Steve Weston [ctb],
Chris Keefer [ctb],
Nathan Coulter [ctb],
Ross Quinlan [aut] ,
Rulequest Research Pty Ltd. [cph]
Maintainer: Max Kuhn <mxkuhn@gmail.com>
Diff between Cubist versions 0.4.4 dated 2024-07-01 and 0.5.0 dated 2025-04-03
DESCRIPTION | 8 MD5 | 54 ++--- NEWS.md | 4 build/vignette.rds |binary inst/doc/cubist.R | 10 - inst/doc/cubist.html | 484 +++++++------------------------------------------- src/construct.c | 18 - src/contin.c | 4 src/defns.h | 8 src/discr.c | 2 src/formrules.c | 6 src/formtree.c | 12 - src/getdata.c | 18 - src/getnames.c | 8 src/global.c | 4 src/implicitatt.c | 38 +-- src/instance.c | 16 - src/modelfiles.c | 12 - src/predict.c | 4 src/prunetree.c | 8 src/rcubist.c | 4 src/regress.c | 24 +- src/rsample.c | 4 src/rulebasedmodels.c | 14 - src/rules.c | 26 +- src/sample.c | 4 src/trees.c | 6 src/utility.c | 24 +- 28 files changed, 246 insertions(+), 578 deletions(-)
More information about DamageDetective at CRAN
Permanent link
Title: R Interface to 'Redatam' Library
Description: Provides an API to work with 'Redatam' (see <https://redatam.org>)
databases in both formats: 'RXDB' (new format) and 'DICX' (old format) and running
'Redatam' programs written in 'SPC' language. It's a wrapper around 'Redatam'
core and provides functions to open/close a database (redatam_open()/redatam_close()),
list entities and variables from the database (redatam_entities(), redatam_variables())
and execute a 'SPC' program and gets the results as data frames
(redatam_query(), redatam_run()).
Author: Jaime Salvador [aut, cre] ,
CELADE [cph]
Maintainer: Jaime Salvador <jaime.salvador@ideasybits.com>
Diff between redatamx versions 1.1.0 dated 2024-12-22 and 1.1.1 dated 2025-04-03
DESCRIPTION | 6 ++-- MD5 | 27 ++++++++++-------- NAMESPACE | 1 NEWS.md | 8 +++++ R/cpp11.R | 2 - R/redatam-api.R | 2 - R/redatam-plugins.R |only R/zzz.R | 4 +- README.md | 64 +++++++++++++++++++++++++++++++++++++++++++++ configure | 12 +++----- configure.win | 17 ++++------- man/redatam_load_plugin.Rd |only src/cpp11.cpp | 9 ++++++ src/red_initialize.cpp | 17 +++++++---- src/red_plugins.cpp |only src/redengine_c.h | 3 ++ 16 files changed, 128 insertions(+), 44 deletions(-)
Title: Tutorials for "R for Data Science"
Description: When assigned "R for Data Science" (Wickham, Çetinkaya-Rundel,
and Grolemund (2023, ISBN: 1492097402)), students should read the book and
type in all the associated R commands themselves. Sadly, that never happens.
These tutorials allow students to demonstrate (and their instructors
to be sure) that all work has been completed. See Kane (2023)
<https://ppbds.github.io/tutorial.helpers/articles/instructions.html> from
the 'tutorial.helpers' package for a background discussion.
Author: David Kane [aut, cre, cph]
Maintainer: David Kane <dave.kane@gmail.com>
Diff between r4ds.tutorials versions 0.3.0 dated 2024-07-03 and 0.3.1 dated 2025-04-03
r4ds.tutorials-0.3.0/r4ds.tutorials/inst/tutorials/02-rstudio-and-code |only r4ds.tutorials-0.3.0/r4ds.tutorials/inst/tutorials/04-rstudio-and-github |only r4ds.tutorials-0.3.0/r4ds.tutorials/inst/tutorials/06-terminal/images/pwd.png |only r4ds.tutorials-0.3.0/r4ds.tutorials/inst/tutorials/28-quarto-websites |only r4ds.tutorials-0.3.1/r4ds.tutorials/DESCRIPTION | 10 r4ds.tutorials-0.3.1/r4ds.tutorials/MD5 | 186 - r4ds.tutorials-0.3.1/r4ds.tutorials/NEWS.md | 4 r4ds.tutorials-0.3.1/r4ds.tutorials/README.md | 5 r4ds.tutorials-0.3.1/r4ds.tutorials/inst/tutorials/00-introduction/images/base.png |binary r4ds.tutorials-0.3.1/r4ds.tutorials/inst/tutorials/00-introduction/tutorial.Rmd | 981 ++++- r4ds.tutorials-0.3.1/r4ds.tutorials/inst/tutorials/01-data-visualization/images/EDA-boxplot.png |binary r4ds.tutorials-0.3.1/r4ds.tutorials/inst/tutorials/01-data-visualization/images/tidy-data.png |only r4ds.tutorials-0.3.1/r4ds.tutorials/inst/tutorials/01-data-visualization/tutorial.Rmd | 1740 ++------- r4ds.tutorials-0.3.1/r4ds.tutorials/inst/tutorials/02a-rstudio-and-code |only r4ds.tutorials-0.3.1/r4ds.tutorials/inst/tutorials/02b-rstudio-and-quarto |only r4ds.tutorials-0.3.1/r4ds.tutorials/inst/tutorials/04a-rstudio-and-github-introduction |only r4ds.tutorials-0.3.1/r4ds.tutorials/inst/tutorials/04b-rstudio-and-github-advanced |only r4ds.tutorials-0.3.1/r4ds.tutorials/inst/tutorials/05-data-tidying/tutorial.Rmd | 599 --- r4ds.tutorials-0.3.1/r4ds.tutorials/inst/tutorials/06-terminal/images/download.png |only r4ds.tutorials-0.3.1/r4ds.tutorials/inst/tutorials/06-terminal/tutorial.Rmd | 1177 +++++- r4ds.tutorials-0.3.1/r4ds.tutorials/inst/tutorials/07-data-import/tutorial.Rmd | 177 r4ds.tutorials-0.3.1/r4ds.tutorials/inst/tutorials/08-getting-help/tutorial.Rmd | 30 r4ds.tutorials-0.3.1/r4ds.tutorials/inst/tutorials/11-communication/tutorial.Rmd | 5 r4ds.tutorials-0.3.1/r4ds.tutorials/inst/tutorials/13-numbers/tutorial.Rmd | 1773 ++++------ r4ds.tutorials-0.3.1/r4ds.tutorials/inst/tutorials/14-strings/tutorial.Rmd | 2 r4ds.tutorials-0.3.1/r4ds.tutorials/inst/tutorials/15-regular-expressions/tutorial.Rmd | 734 +++- r4ds.tutorials-0.3.1/r4ds.tutorials/inst/tutorials/16-factors/tutorial.Rmd | 303 + r4ds.tutorials-0.3.1/r4ds.tutorials/inst/tutorials/17-dates-and-times/tutorial.Rmd | 1511 +++++++- r4ds.tutorials-0.3.1/r4ds.tutorials/inst/tutorials/18-missing-values/tutorial.Rmd | 385 +- r4ds.tutorials-0.3.1/r4ds.tutorials/inst/tutorials/19-joins/images/anti.png |only r4ds.tutorials-0.3.1/r4ds.tutorials/inst/tutorials/19-joins/images/closest.png |binary r4ds.tutorials-0.3.1/r4ds.tutorials/inst/tutorials/19-joins/images/cross.png |binary r4ds.tutorials-0.3.1/r4ds.tutorials/inst/tutorials/19-joins/images/full.png |binary r4ds.tutorials-0.3.1/r4ds.tutorials/inst/tutorials/19-joins/images/gte.png |binary r4ds.tutorials-0.3.1/r4ds.tutorials/inst/tutorials/19-joins/images/inner-both.png |binary r4ds.tutorials-0.3.1/r4ds.tutorials/inst/tutorials/19-joins/images/inner.png |binary r4ds.tutorials-0.3.1/r4ds.tutorials/inst/tutorials/19-joins/images/left.png |binary r4ds.tutorials-0.3.1/r4ds.tutorials/inst/tutorials/19-joins/images/lt.png |binary r4ds.tutorials-0.3.1/r4ds.tutorials/inst/tutorials/19-joins/images/match-types.png |binary r4ds.tutorials-0.3.1/r4ds.tutorials/inst/tutorials/19-joins/images/photo1.png |binary r4ds.tutorials-0.3.1/r4ds.tutorials/inst/tutorials/19-joins/images/relational.png |binary r4ds.tutorials-0.3.1/r4ds.tutorials/inst/tutorials/19-joins/images/right.png |binary r4ds.tutorials-0.3.1/r4ds.tutorials/inst/tutorials/19-joins/images/semi.png |only r4ds.tutorials-0.3.1/r4ds.tutorials/inst/tutorials/19-joins/images/setup2.png |binary r4ds.tutorials-0.3.1/r4ds.tutorials/inst/tutorials/19-joins/images/venn.png |binary r4ds.tutorials-0.3.1/r4ds.tutorials/inst/tutorials/19-joins/tutorial.Rmd | 1245 +++++-- r4ds.tutorials-0.3.1/r4ds.tutorials/inst/tutorials/20-spreadsheets/tutorial.Rmd | 12 r4ds.tutorials-0.3.1/r4ds.tutorials/inst/tutorials/21-databases/tutorial.Rmd | 134 r4ds.tutorials-0.3.1/r4ds.tutorials/inst/tutorials/22-arrow/tutorial.Rmd | 120 r4ds.tutorials-0.3.1/r4ds.tutorials/inst/tutorials/23-hierarchical-data/images/View-1-min.png |binary r4ds.tutorials-0.3.1/r4ds.tutorials/inst/tutorials/23-hierarchical-data/images/View-2-min.png |binary r4ds.tutorials-0.3.1/r4ds.tutorials/inst/tutorials/23-hierarchical-data/images/View-3-min.png |binary r4ds.tutorials-0.3.1/r4ds.tutorials/inst/tutorials/23-hierarchical-data/tutorial.Rmd | 175 r4ds.tutorials-0.3.1/r4ds.tutorials/inst/tutorials/24-web-scraping/tutorial.Rmd | 370 +- r4ds.tutorials-0.3.1/r4ds.tutorials/inst/tutorials/25-functions/tutorial.Rmd | 257 - r4ds.tutorials-0.3.1/r4ds.tutorials/inst/tutorials/26-iteration/tutorial.Rmd | 262 - r4ds.tutorials-0.3.1/r4ds.tutorials/inst/tutorials/27-a-field-guide-to-base-R/tutorial.Rmd | 306 + r4ds.tutorials-0.3.1/r4ds.tutorials/inst/tutorials/28-quarto-websites-introduction |only r4ds.tutorials-0.3.1/r4ds.tutorials/inst/tutorials/29-quarto-websites-advanced |only 59 files changed, 7549 insertions(+), 4954 deletions(-)
More information about r4ds.tutorials at CRAN
Permanent link
More information about NHSRwaitinglist at CRAN
Permanent link
More information about friendlynumber at CRAN
Permanent link
Title: R Markdown Output Formats for Storytelling
Description: R Markdown output formats based on JavaScript libraries such as
'Scrollama' (<https://github.com/russellsamora/scrollama>) for storytelling.
Author: Yihui Xie [aut, cre] ,
Siqi Zhang [ctb],
Russell Goldenberg [ctb]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between rolldown versions 0.1 dated 2019-07-14 and 0.2 dated 2025-04-03
DESCRIPTION | 18 - LICENSE | 2 MD5 | 25 +- NEWS.md |only R/scrollama.R | 11 README.md | 35 ++ build/vignette.rds |binary inst/doc/scrollama-basic.R | 12 - inst/doc/scrollama-basic.Rmd | 2 inst/doc/scrollama-basic.html | 470 ++++++---------------------------------- inst/doc/scrollama-sidebar.R | 4 inst/doc/scrollama-sidebar.html | 162 +++++++------ man/scrollama.Rd | 15 - vignettes/scrollama-basic.Rmd | 2 14 files changed, 234 insertions(+), 524 deletions(-)
Title: Analysis of Chronological Patterns from Archaeological Count
Data
Description: A toolkit for absolute and relative dating and analysis of
chronological patterns. This package includes functions for
chronological modeling and dating of archaeological assemblages from
count data. It provides methods for matrix seriation. It also allows
to compute time point estimates and density estimates of the
occupation and duration of an archaeological site.
Author: Nicolas Frerebeau [aut, cre] ,
Brice Lebrun [art] ,
Ben Marwick [ctb] ,
Anne Philippe [ctb] ,
Universite Bordeaux Montaigne [fnd] ,
CNRS [fnd]
Maintainer: Nicolas Frerebeau <nicolas.frerebeau@u-bordeaux-montaigne.fr>
Diff between kairos versions 2.2.0 dated 2024-12-10 and 2.2.1 dated 2025-04-03
kairos-2.2.0/kairos/R/reexport.R |only kairos-2.2.0/kairos/man/reexports.Rd |only kairos-2.2.1/kairos/DESCRIPTION | 47 +-- kairos-2.2.1/kairos/MD5 | 90 +++--- kairos-2.2.1/kairos/NAMESPACE | 31 -- kairos-2.2.1/kairos/NEWS.md | 5 kairos-2.2.1/kairos/R/AllGenerics.R | 20 - kairos-2.2.1/kairos/R/aoristic.R | 6 kairos-2.2.1/kairos/R/coerce.R | 4 kairos-2.2.1/kairos/R/event_date.R | 10 kairos-2.2.1/kairos/R/event_model.R | 8 kairos-2.2.1/kairos/R/event_plot.R | 2 kairos-2.2.1/kairos/R/event_resample.R | 4 kairos-2.2.1/kairos/R/fit.R | 2 kairos-2.2.1/kairos/R/kairos-package.R | 5 kairos-2.2.1/kairos/R/mcd.R | 8 kairos-2.2.1/kairos/R/plot_time.R | 4 kairos-2.2.1/kairos/R/show.R | 2 kairos-2.2.1/kairos/R/zzz.R | 3 kairos-2.2.1/kairos/README.md | 16 - kairos-2.2.1/kairos/build/partial.rdb |binary kairos-2.2.1/kairos/build/vignette.rds |binary kairos-2.2.1/kairos/inst/CITATION | 2 kairos-2.2.1/kairos/inst/doc/event.Rmd | 3 kairos-2.2.1/kairos/inst/doc/event.html | 240 +++++++---------- kairos-2.2.1/kairos/inst/doc/seriation.Rmd | 1 kairos-2.2.1/kairos/inst/doc/seriation.html | 234 +++++++--------- kairos-2.2.1/kairos/inst/po/fr/LC_MESSAGES/R-kairos.mo |binary kairos-2.2.1/kairos/man/aoristic.Rd | 2 kairos-2.2.1/kairos/man/data.frame.Rd | 6 kairos-2.2.1/kairos/man/event.Rd | 2 kairos-2.2.1/kairos/man/fit.Rd | 2 kairos-2.2.1/kairos/man/kairos-package.Rd | 9 kairos-2.2.1/kairos/man/mcd.Rd | 2 kairos-2.2.1/kairos/man/plot_aoristic.Rd | 8 kairos-2.2.1/kairos/man/plot_event.Rd | 2 kairos-2.2.1/kairos/man/plot_fit.Rd | 4 kairos-2.2.1/kairos/man/plot_mcd.Rd | 6 kairos-2.2.1/kairos/man/plot_time.Rd | 6 kairos-2.2.1/kairos/man/predict_event.Rd | 22 - kairos-2.2.1/kairos/man/refine.Rd | 4 kairos-2.2.1/kairos/man/resample_event.Rd | 4 kairos-2.2.1/kairos/man/resample_mcd.Rd | 6 kairos-2.2.1/kairos/po/R-fr.po | 25 - kairos-2.2.1/kairos/vignettes/bibliography.bib | 62 ++-- kairos-2.2.1/kairos/vignettes/event.Rmd | 3 kairos-2.2.1/kairos/vignettes/seriation.Rmd | 1 47 files changed, 412 insertions(+), 511 deletions(-)
Title: Flexibly Format Dates and Times to a Given Locale
Description: Format dates and times flexibly and to whichever locales
make sense. Parses dates, times, and date-times in various formats
(including string-based ISO 8601 constructions). The formatting syntax gives
the user many options for formatting the date and time output in a precise
manner. Time zones in the input can be expressed in multiple ways and there
are many options for formatting time zones in the output as well. Several of
the provided helper functions allow for automatic generation of locale-aware
formatting patterns based on date/time skeleton formats and standardized
date/time formats with varying specificity.
Author: Richard Iannone [aut, cre] ,
Olivier Roy [ctb],
Posit Software, PBC [cph, fnd]
Maintainer: Richard Iannone <rich@posit.co>
Diff between bigD versions 0.3.0 dated 2024-11-08 and 0.3.1 dated 2025-04-03
bigD-0.3.0/bigD/tests/testthat/test-dates_times.R |only bigD-0.3.0/bigD/tests/testthat/test-time_zones.R |only bigD-0.3.1/bigD/DESCRIPTION | 16 bigD-0.3.1/bigD/MD5 | 21 bigD-0.3.1/bigD/NEWS.md | 7 bigD-0.3.1/bigD/R/dt_formatters.R | 1310 ---------------------- bigD-0.3.1/bigD/R/dt_replace.R |only bigD-0.3.1/bigD/R/fdt.R | 315 ----- bigD-0.3.1/bigD/R/fdt_locales.R | 4 bigD-0.3.1/bigD/R/utils-date_time_parse.R | 118 - bigD-0.3.1/bigD/R/utils.R | 8 bigD-0.3.1/bigD/R/zzz.R | 13 bigD-0.3.1/bigD/man/fdt_locales_vec.Rd | 4 13 files changed, 142 insertions(+), 1674 deletions(-)
Title: Class Unions, Matrix Operations, and Color Schemes for OOMPA
Description: Provides the class unions that must be
preloaded in order for the basic tools in the OOMPA (Object-Oriented
Microarray and Proteomics Analysis) project to be defined and loaded.
It also includes vectorized operations for row-by-row means,
variances, and t-tests. Finally, it provides new color schemes.
Details on the packages in the OOMPA project can be found at
<http://oompa.r-forge.r-project.org/>.
Author: Kevin R. Coombes [aut, cre]
Maintainer: Kevin R. Coombes <krc@silicovore.com>
Diff between oompaBase versions 3.2.9 dated 2019-08-24 and 3.2.10 dated 2025-04-03
DESCRIPTION | 18 +++++++++++------- MD5 | 8 ++++---- build/vignette.rds |binary inst/doc/oompa.pdf |binary man/z02-colorSchemes.Rd | 10 +++++----- 5 files changed, 20 insertions(+), 16 deletions(-)
Title: LaTeX Wrappers for R Users
Description: Provides the functionality to write LaTeX code from within R
without having to learn LaTeX. Functionality also exists to create HTML
and Markdown code. While the functionality still exists to write
complete documents with lazyWeave, it is generally easier to do so with
with markdown and knitr. lazyWeave's main strength now is the ability
to design custom and complex tables for reporting results.
Author: Benjamin Nutter [aut, cre]
Maintainer: Benjamin Nutter <benjamin.nutter@gmail.com>
Diff between lazyWeave versions 3.0.2 dated 2018-01-25 and 3.0.3 dated 2025-04-03
lazyWeave-3.0.2/lazyWeave/data/Scout.RData |only lazyWeave-3.0.2/lazyWeave/man/Scout.rd |only lazyWeave-3.0.3/lazyWeave/DESCRIPTION | 8 lazyWeave-3.0.3/lazyWeave/MD5 | 162 - lazyWeave-3.0.3/lazyWeave/NAMESPACE | 74 lazyWeave-3.0.3/lazyWeave/NEWS | 118 - lazyWeave-3.0.3/lazyWeave/R/catconttable.R | 404 ++-- lazyWeave-3.0.3/lazyWeave/R/cattable.R | 458 ++-- lazyWeave-3.0.3/lazyWeave/R/conttable.R | 400 ++-- lazyWeave-3.0.3/lazyWeave/R/is.significant.R | 74 lazyWeave-3.0.3/lazyWeave/R/lazy.build.R | 286 +-- lazyWeave-3.0.3/lazyWeave/R/lazy.citation.R | 116 - lazyWeave-3.0.3/lazyWeave/R/lazy.counter.R | 276 +- lazyWeave-3.0.3/lazyWeave/R/lazy.figure.R | 324 +-- lazyWeave-3.0.3/lazyWeave/R/lazy.file.end.R | 44 lazyWeave-3.0.3/lazyWeave/R/lazy.file.start.R | 262 +- lazyWeave-3.0.3/lazyWeave/R/lazy.footnote.R | 154 - lazyWeave-3.0.3/lazyWeave/R/lazy.insert.code.R | 80 lazyWeave-3.0.3/lazyWeave/R/lazy.label.R | 54 lazyWeave-3.0.3/lazyWeave/R/lazy.landscape.R | 70 lazyWeave-3.0.3/lazyWeave/R/lazy.link.R | 118 - lazyWeave-3.0.3/lazyWeave/R/lazy.list.R | 344 +-- lazyWeave-3.0.3/lazyWeave/R/lazy.matrix.R | 282 +-- lazyWeave-3.0.3/lazyWeave/R/lazy.page.break.R | 68 lazyWeave-3.0.3/lazyWeave/R/lazy.page.number.R | 70 lazyWeave-3.0.3/lazyWeave/R/lazy.ref.R | 108 - lazyWeave-3.0.3/lazyWeave/R/lazy.section.R | 352 +-- lazyWeave-3.0.3/lazyWeave/R/lazy.table.R | 924 +++++----- lazyWeave-3.0.3/lazyWeave/R/lazy.text.R | 298 +-- lazyWeave-3.0.3/lazyWeave/R/lazy.text.format.R | 126 - lazyWeave-3.0.3/lazyWeave/R/lazy.toc.R | 152 - lazyWeave-3.0.3/lazyWeave/R/lazy.verbatim.end.R | 28 lazyWeave-3.0.3/lazyWeave/R/lazy.verbatim.start.R | 78 lazyWeave-3.0.3/lazyWeave/R/lazy.write.R | 148 - lazyWeave-3.0.3/lazyWeave/R/lazyWeave.R | 79 lazyWeave-3.0.3/lazyWeave/R/mantel.test.R | 294 +-- lazyWeave-3.0.3/lazyWeave/R/map.size.R | 114 - lazyWeave-3.0.3/lazyWeave/R/print.ctable.R | 242 +- lazyWeave-3.0.3/lazyWeave/R/pvalString.R | 166 - lazyWeave-3.0.3/lazyWeave/R/setHtmlOptions.R | 114 - lazyWeave-3.0.3/lazyWeave/R/split_ctable.R | 56 lazyWeave-3.0.3/lazyWeave/R/univ.R | 346 +-- lazyWeave-3.0.3/lazyWeave/R/write.ctable.r | 678 +++---- lazyWeave-3.0.3/lazyWeave/R/write.univ.R | 224 +- lazyWeave-3.0.3/lazyWeave/R/zzz.R | 36 lazyWeave-3.0.3/lazyWeave/README.md | 52 lazyWeave-3.0.3/lazyWeave/man/ComparisonTable.Rd | 441 ++-- lazyWeave-3.0.3/lazyWeave/man/Delivery.rd | 68 lazyWeave-3.0.3/lazyWeave/man/WritePrintCtable.Rd | 262 +- lazyWeave-3.0.3/lazyWeave/man/is_significant.Rd | 76 lazyWeave-3.0.3/lazyWeave/man/lazy.build.Rd | 96 - lazyWeave-3.0.3/lazyWeave/man/lazy.citation.Rd | 92 lazyWeave-3.0.3/lazyWeave/man/lazy.counter.Rd | 156 - lazyWeave-3.0.3/lazyWeave/man/lazy.figure.Rd | 186 +- lazyWeave-3.0.3/lazyWeave/man/lazy.file.end.Rd | 36 lazyWeave-3.0.3/lazyWeave/man/lazy.file.start.Rd | 167 - lazyWeave-3.0.3/lazyWeave/man/lazy.footnote.Rd | 107 - lazyWeave-3.0.3/lazyWeave/man/lazy.insert.code.Rd | 70 lazyWeave-3.0.3/lazyWeave/man/lazy.landscape.Rd | 60 lazyWeave-3.0.3/lazyWeave/man/lazy.link.Rd | 68 lazyWeave-3.0.3/lazyWeave/man/lazy.list.Rd | 157 - lazyWeave-3.0.3/lazyWeave/man/lazy.matrix.Rd | 183 + lazyWeave-3.0.3/lazyWeave/man/lazy.page.break.Rd | 62 lazyWeave-3.0.3/lazyWeave/man/lazy.page.number.Rd | 58 lazyWeave-3.0.3/lazyWeave/man/lazy.ref.Rd | 74 lazyWeave-3.0.3/lazyWeave/man/lazy.section.Rd | 167 - lazyWeave-3.0.3/lazyWeave/man/lazy.table.Rd | 388 ++-- lazyWeave-3.0.3/lazyWeave/man/lazy.text.Rd | 184 + lazyWeave-3.0.3/lazyWeave/man/lazy.text.format.Rd | 99 - lazyWeave-3.0.3/lazyWeave/man/lazy.toc.Rd | 108 - lazyWeave-3.0.3/lazyWeave/man/lazy.verbatim.start.Rd | 72 lazyWeave-3.0.3/lazyWeave/man/lazy.write.Rd | 69 lazyWeave-3.0.3/lazyWeave/man/lazyWeave.Rd | 90 lazyWeave-3.0.3/lazyWeave/man/mantel.test.Rd | 128 - lazyWeave-3.0.3/lazyWeave/man/map.size.Rd | 80 lazyWeave-3.0.3/lazyWeave/man/pvalString.Rd | 100 - lazyWeave-3.0.3/lazyWeave/man/setHtmlOptions.Rd | 128 - lazyWeave-3.0.3/lazyWeave/man/univ.Rd | 196 +- lazyWeave-3.0.3/lazyWeave/man/write.univ.Rd | 248 +- lazyWeave-3.0.3/lazyWeave/tests/testthat.R | 6 lazyWeave-3.0.3/lazyWeave/tests/testthat/test-is.significant.R | 28 lazyWeave-3.0.3/lazyWeave/tests/testthat/test-lazy.citation.R | 48 lazyWeave-3.0.3/lazyWeave/tests/testthat/test-lazy.counter.R | 4 83 files changed, 6818 insertions(+), 6605 deletions(-)
Title: Association Rule Classification
Description: Implements the Classification-based on
Association Rules (CBA) algorithm for association rule classification.
The package, also described in Hahsler et al. (2019) <doi:10.32614/RJ-2019-048>,
contains several convenience methods that allow to automatically
set CBA parameters (minimum confidence, minimum support) and it also natively
handles numeric attributes by integrating a pre-discretization step.
The rule generation phase is handled by the 'arules' package.
To further decrease the size of the CBA models produced by the 'arc' package, postprocessing by the
'qCBA' package is suggested.
Author: Tomas Kliegr [aut, cre]
Maintainer: Tomas Kliegr <kliegr@gmail.com>
Diff between arc versions 1.4 dated 2023-08-17 and 1.4.2 dated 2025-04-03
arc-1.4.2/arc/DESCRIPTION | 20 ++++++++++++-------- arc-1.4.2/arc/MD5 | 21 +++++++++++---------- arc-1.4.2/arc/NEWS | 13 +++++++++++++ arc-1.4.2/arc/R/cba.R | 27 +++++++++++++++++++-------- arc-1.4.2/arc/R/m1prune.R | 2 +- arc-1.4.2/arc/R/mdlp2.R | 8 ++++---- arc-1.4.2/arc/data/humtemp.csv.gz |only arc-1.4.2/arc/data/humtemp.rda |only arc-1.4.2/arc/man/cba.Rd | 4 ++-- arc-1.4.2/arc/man/cba_manual.Rd | 4 ++-- arc-1.4.2/arc/man/discrNumeric.Rd | 4 ++-- arc-1.4.2/arc/man/prune.Rd | 2 +- arc-1.4/arc/data/humtemp.csv |only 13 files changed, 67 insertions(+), 38 deletions(-)
Title: Simulation-Based Inference Methods for Infectious Disease Models
Description: Provides some code to run simulations of state-space models, and then
use these in the Approximate Bayesian Computation Sequential Monte Carlo (ABC-SMC)
algorithm of Toni et al. (2009) <doi:10.1098/rsif.2008.0172> and a bootstrap particle
filter based particle Markov chain Monte Carlo (PMCMC) algorithm
(Andrieu et al., 2010 <doi:10.1111/j.1467-9868.2009.00736.x>).
Also provides functions to plot and summarise the outputs.
Author: Trevelyan J. McKinley [aut, cre],
Stefan Widgren [aut] ,
Pavol Bauer [cph] ,
Robin Eriksson [cph] ,
Stefan Engblom [cph]
Maintainer: Trevelyan J. McKinley <t.mckinley@exeter.ac.uk>
Diff between SimBIID versions 0.2.1 dated 2021-02-04 and 0.2.2 dated 2025-04-03
SimBIID-0.2.1/SimBIID/man/SimBIID-package.Rd |only SimBIID-0.2.2/SimBIID/DESCRIPTION | 8 ++-- SimBIID-0.2.2/SimBIID/MD5 | 54 +++++++++++++-------------- SimBIID-0.2.2/SimBIID/NEWS.md | 7 +++ SimBIID-0.2.2/SimBIID/R/ABCSMC.R | 4 -- SimBIID-0.2.2/SimBIID/R/PMCMC.R | 27 ++++++------- SimBIID-0.2.2/SimBIID/R/SimBIID-package.R | 5 +- SimBIID-0.2.2/SimBIID/R/bootStates.R | 2 - SimBIID-0.2.2/SimBIID/R/compileRcpp.R | 2 - SimBIID-0.2.2/SimBIID/R/mparseRcpp.R | 2 - SimBIID-0.2.2/SimBIID/R/plotABC.R | 2 - SimBIID-0.2.2/SimBIID/R/plotPMCMC.R | 2 - SimBIID-0.2.2/SimBIID/R/plotSimBIID_runs.R | 4 +- SimBIID-0.2.2/SimBIID/R/predictPMCMC.R | 4 +- SimBIID-0.2.2/SimBIID/R/printABC.R | 2 - SimBIID-0.2.2/SimBIID/R/printPMCMC.R | 2 - SimBIID-0.2.2/SimBIID/R/run.R | 4 -- SimBIID-0.2.2/SimBIID/R/summaryABC.R | 2 - SimBIID-0.2.2/SimBIID/R/summaryPMCMC.R | 2 - SimBIID-0.2.2/SimBIID/R/windowPMCMC.R | 4 +- SimBIID-0.2.2/SimBIID/man/ABCSMC.Rd | 2 - SimBIID-0.2.2/SimBIID/man/PMCMC.Rd | 19 ++++----- SimBIID-0.2.2/SimBIID/man/SimBIID.Rd |only SimBIID-0.2.2/SimBIID/man/mparseRcpp.Rd | 2 - SimBIID-0.2.2/SimBIID/man/run.Rd | 2 - SimBIID-0.2.2/SimBIID/man/window.PMCMC.Rd | 2 - SimBIID-0.2.2/SimBIID/src/Makevars | 4 +- SimBIID-0.2.2/SimBIID/src/Makevars.win | 4 +- SimBIID-0.2.2/SimBIID/src/RcppExports.cpp | 5 ++ 29 files changed, 88 insertions(+), 91 deletions(-)
Title: R Markdown Format for 'reveal.js' Presentations
Description: R Markdown format for 'reveal.js' presentations, a framework
for easily creating beautiful presentations using HTML.
Author: Christophe Dervieux [cre],
JJ Allaire [aut],
Hakim El Hattab [aut, cph] ,
Asvin Goel [ctb, cph] ,
Greg Denehy [ctb, cph] ,
Posit Software, PBC [cph, fnd]
Maintainer: Christophe Dervieux <cderv@posit.co>
Diff between revealjs versions 0.9 dated 2017-03-13 and 0.10.0 dated 2025-04-03
revealjs-0.10.0/revealjs/DESCRIPTION | 45 revealjs-0.10.0/revealjs/LICENSE | 4 revealjs-0.10.0/revealjs/MD5 | 236 - revealjs-0.10.0/revealjs/NAMESPACE | 8 revealjs-0.10.0/revealjs/NEWS.md |only revealjs-0.10.0/revealjs/R/revealjs.R | 6 revealjs-0.10.0/revealjs/R/revealjs_presentation.R | 663 ++-- revealjs-0.10.0/revealjs/R/utils.R |only revealjs-0.10.0/revealjs/inst/NOTICE | 858 ++--- revealjs-0.10.0/revealjs/inst/reveal.js-4.2.1 |only revealjs-0.10.0/revealjs/inst/rmarkdown/templates/revealjs_presentation/resources/default.html | 1434 ++++------ revealjs-0.10.0/revealjs/inst/rmarkdown/templates/revealjs_presentation/skeleton/skeleton.Rmd | 240 + revealjs-0.10.0/revealjs/inst/rmarkdown/templates/revealjs_presentation/template.yaml | 8 revealjs-0.10.0/revealjs/man/revealjs_presentation.Rd | 378 +- revealjs-0.10.0/revealjs/tests/testthat.R | 8 revealjs-0.10.0/revealjs/tests/testthat/helpers.R |only revealjs-0.10.0/revealjs/tests/testthat/test-revealjs_presentation.R |only revealjs-0.10.0/revealjs/tests/testthat/test-themes.R |only revealjs-0.10.0/revealjs/tests/testthat/test-utils.R |only revealjs-0.9/revealjs/inst/COPYING |only revealjs-0.9/revealjs/inst/NEWS |only revealjs-0.9/revealjs/inst/reveal.js-3.3.0.1 |only revealjs-0.9/revealjs/tests/testthat/test_themes.R |only 23 files changed, 2057 insertions(+), 1831 deletions(-)
Title: Response-Adaptive Randomization in Clinical Trials
Description: Some response-adaptive randomization methods commonly found in literature are included in this package. These methods include the randomized play-the-winner rule for binary endpoint (Wei and Durham (1978) <doi:10.2307/2286290>), the doubly adaptive biased coin design with minimal variance strategy for binary endpoint (Atkinson and Biswas (2013) <doi:10.1201/b16101>, Rosenberger and Lachin (2015) <doi:10.1002/9781118742112>) and maximal power strategy targeting Neyman allocation for binary endpoint (Tymofyeyev, Rosenberger, and Hu (2007) <doi:10.1198/016214506000000906>) and RSIHR allocation with each letter representing the first character of the names of the individuals who first proposed this rule (Youngsook and Hu (2010) <doi:10.1198/sbr.2009.0056>, Bello and Sabo (2016) <doi:10.1080/00949655.2015.1114116>), A-optimal Allocation for continuous endpoint (Sverdlov and Rosenberger (2013) <doi:10.1080/15598608.2013.783726>), Aa-optimal Allocatio [...truncated...]
Author: Chuyao Xu [aut, cre],
Thomas Lumley [aut, ths],
Alain Vandal [aut, ths],
Sofia S. Villar [cph],
Kyle J. Wathen [cph]
Maintainer: Chuyao Xu <cxu870@aucklanduni.ac.nz>
Diff between RARtrials versions 0.0.1 dated 2024-06-04 and 0.0.2 dated 2025-04-03
DESCRIPTION | 6 +- MD5 | 98 +++++++++++++++++++------------------- R/brar_select_au_binary.r | 6 +- R/brar_select_au_known_var.r | 4 - R/brar_select_au_unknown_var.r | 8 +-- R/convert_chisq_to_gamma.r | 6 +- R/convert_gamma_to_chisq.r | 6 +- R/dabcd_max_power.r | 4 + R/flgi_cut_off_binary.r | 1 R/flgi_cut_off_known_var.r | 2 R/flgi_cut_off_unknown_var.r | 2 R/pgreater_NIX.r | 9 +-- R/pgreater_beta.r | 8 +-- R/pgreater_normal.r | 12 ++-- R/pmax_NIX.r | 8 +-- R/pmax_beta.r | 4 - R/pmax_normal.r | 6 +- R/sim_brar_binary.r | 4 - R/sim_brar_known_var.r | 4 - R/sim_dabcd_max_power.r | 3 + R/sim_flgi_known_var.r | 2 R/sim_flgi_unknown_var.r | 2 R/update_par_nichisq.r | 6 +- README.md | 6 +- build/partial.rdb |binary inst/doc/RARtrials.R | 14 ++--- inst/doc/RARtrials.Rmd | 18 +++--- inst/doc/RARtrials.pdf |binary man/brar_select_au_binary.Rd | 6 +- man/brar_select_au_known_var.Rd | 4 - man/brar_select_au_unknown_var.Rd | 8 +-- man/convert_chisq_to_gamma.Rd | 6 +- man/convert_gamma_to_chisq.Rd | 6 +- man/dabcd_max_power.Rd | 3 + man/flgi_cut_off_binary.Rd | 1 man/flgi_cut_off_known_var.Rd | 2 man/flgi_cut_off_unknown_var.Rd | 2 man/pgreater_NIX.Rd | 9 +-- man/pgreater_beta.Rd | 8 +-- man/pgreater_normal.Rd | 12 ++-- man/pmax_NIX.Rd | 8 +-- man/pmax_beta.Rd | 4 - man/pmax_normal.Rd | 6 +- man/sim_brar_binary.Rd | 4 - man/sim_brar_known_var.Rd | 4 - man/sim_dabcd_max_power.Rd | 3 + man/sim_flgi_known_var.Rd | 2 man/sim_flgi_unknown_var.Rd | 2 man/update_par_nichisq.Rd | 6 +- vignettes/RARtrials.Rmd | 18 +++--- 50 files changed, 195 insertions(+), 178 deletions(-)
Title: Postprocessing of Rule Classification Models Learnt on Quantized
Data
Description: Implements the Quantitative Classification-based on
Association Rules (QCBA) algorithm (<doi:10.1007/s10489-022-04370-x>).
QCBA postprocesses rule classification models making them typically smaller and in some cases more accurate.
Supported are 'CBA' implementations from 'rCBA', 'arulesCBA' and 'arc' packages, and 'CPAR', 'CMAR', 'FOIL2' and 'PRM' implementations
from 'arulesCBA' package and 'SBRL' implementation from the 'sbrl' package. The result of the post-processing is an ordered CBA-like rule list.
Author: Tomas Kliegr [aut, cre]
Maintainer: Tomas Kliegr <kliegr@gmail.com>
Diff between qCBA versions 1.0 dated 2024-08-28 and 1.0.2 dated 2025-04-03
DESCRIPTION | 8 ++-- MD5 | 18 +++++------ NAMESPACE | 2 + NEWS | 8 ++++ R/rMARC.R | 63 ++++++++++++++++++++++++++------------- man/benchmarkQCBA.Rd | 3 + man/qCBARuleModel-class.Rd | 12 ++++++- man/qcbaIris.Rd | 2 + man/qcbaIris2.Rd | 2 + man/sbrlModel2arcCBARuleModel.Rd | 2 - 10 files changed, 85 insertions(+), 35 deletions(-)
Title: Augmented Backward Elimination
Description: Performs augmented backward elimination and checks the stability of the obtained model. Augmented backward elimination combines significance or information based criteria with the change in estimate to either select the optimal model for prediction purposes or to serve as a tool to obtain a practically sound, highly interpretable model. More details can be found in Dunkler et al. (2014) <doi:10.1371/journal.pone.0113677>.
Author: Rok Blagus [aut, cre],
Sladana Babic [ctb],
Daniela Dunkler [ctb],
Georg Heinze [ctb],
Gregor Steiner [ctb]
Maintainer: Rok Blagus <rok.blagus@mf.uni-lj.si>
Diff between abe versions 3.0.1 dated 2017-10-30 and 5.1.2 dated 2025-04-03
DESCRIPTION | 31 MD5 | 45 NAMESPACE | 26 R/abe-package.R |only R/abe.R | 4344 ++++++++++++++++++++++++++++++++++++++------------ README.md |only build |only man/abe-package.Rd |only man/abe.Rd | 131 - man/abe.boot.Rd | 101 - man/abe.fact1.Rd | 18 man/abe.fact1.boot.Rd | 18 man/abe.fact2.Rd | 18 man/abe.fact2.boot.Rd | 18 man/abe.num.Rd | 20 man/abe.num.boot.Rd | 18 man/abe.resampling.Rd |only man/my_grep.Rd | 2 man/my_grepl.Rd | 2 man/my_update.Rd | 2 man/my_update2.Rd | 2 man/my_update_boot.Rd | 2 man/pie.abe.Rd |only man/plot.abe.Rd | 76 man/print.abe.Rd |only man/summary.abe.Rd | 51 tests |only 27 files changed, 3696 insertions(+), 1229 deletions(-)
Title: An Integrated Framework for Textual Sentiment Time Series
Aggregation and Prediction
Description: Optimized prediction based on textual sentiment, accounting for the intrinsic challenge that sentiment can be computed and pooled across texts and time in various ways. See Ardia et al. (2021) <doi:10.18637/jss.v099.i02>.
Author: Samuel Borms [aut, cre] ,
David Ardia [aut] ,
Keven Bluteau [aut] ,
Kris Boudt [aut] ,
Jeroen Van Pelt [ctb],
Andres Algaba [ctb]
Maintainer: Samuel Borms <borms_sam@hotmail.com>
Diff between sentometrics versions 1.0.0 dated 2021-08-18 and 1.0.1 dated 2025-04-03
DESCRIPTION | 10 ++-- MD5 | 48 ++++++++++----------- NEWS.md | 4 + R/attribution.R | 2 R/sentomeasures_methods.R | 4 - R/sentometrics.R | 10 ++-- R/sentomodel.R | 10 ++-- README.md | 6 +- build/partial.rdb |binary man/as.data.table.sento_measures.Rd | 82 ++++++++++++++++++------------------ man/list_lexicons.Rd | 8 +-- man/plot.attributions.Rd | 2 man/plot.sento_measures.Rd | 2 man/plot.sento_modelIter.Rd | 2 man/predict.sento_model.Rd | 8 +-- man/sentometrics-package.Rd | 2 man/usnews.Rd | 2 src/Makevars | 1 src/Makevars.win | 1 src/RcppExports.cpp | 5 ++ src/SentimentScorerBigrams.h | 1 src/SentimentScorerClusters.h | 1 src/SentimentScorerOnegrams.h | 1 src/SentimentScorerSentences.h | 1 src/utils.h | 49 --------------------- 25 files changed, 108 insertions(+), 154 deletions(-)
Title: Maximum Likelihood Estimation of Various Univariate and
Multivariate Distributions
Description: Several functions for maximum likelihood estimation of various univariate and multivariate distributions. The list includes more than 100 functions for univariate continuous and discrete distributions, distributions that lie on the real line, the positive line, interval restricted, circular distributions. Further, multivariate continuous and discrete distributions, distributions for compositional and directional data, etc. Some references include Johnson N. L., Kotz S. and Balakrishnan N. (1994). "Continuous Univariate Distributions, Volume 1" <ISBN:978-0-471-58495-7>, Johnson, Norman L. Kemp, Adrianne W. Kotz, Samuel (2005). "Univariate Discrete Distributions". <ISBN:978-0-471-71580-1> and Mardia, K. V. and Jupp, P. E. (2000). "Directional Statistics". <ISBN:978-0-471-95333-3>.
Author: Michail Tsagris [aut, cre],
Sofia Piperaki [aut],
Muhammad Imran [ctb],
Rafail Vargiakakis [aut],
Nikolaos Kontemeniotis [aut]
Maintainer: Michail Tsagris <mtsagris@uoc.gr>
Diff between MLE versions 1.4 dated 2025-02-17 and 1.5 dated 2025-04-03
DESCRIPTION | 10 +++++----- MD5 | 10 +++++----- NAMESPACE | 2 -- R/coldisc.mle.R | 4 ++-- R/disc.mle.R | 25 ++++++++++++++++++++++++- man/MLE-package.Rd | 4 ++-- 6 files changed, 38 insertions(+), 17 deletions(-)
Title: High-Dimensional Analysis of Variance
Description: Functions and datasets to support Smilde, Marini, Westerhuis and Liland (2025, ISBN: 978-1-394-21121-0)
"Analysis of Variance for High-Dimensional Data - Applications in Life, Food and Chemical Sciences".
This implements and imports a collection of methods for HD-ANOVA data analysis with common interfaces, result- and plotting
functions, multiple real data sets and four vignettes covering a range different applications.
Author: Kristian Hovde Liland [aut, cre]
Maintainer: Kristian Hovde Liland <kristian.liland@nmbu.no>
Diff between HDANOVA versions 0.8.2 dated 2025-01-21 and 0.8.3 dated 2025-04-03
HDANOVA-0.8.2/HDANOVA/R/asca_fit.R |only HDANOVA-0.8.2/HDANOVA/man/asca_fit.Rd |only HDANOVA-0.8.3/HDANOVA/DESCRIPTION | 8 HDANOVA-0.8.3/HDANOVA/MD5 | 78 +- HDANOVA-0.8.3/HDANOVA/NAMESPACE | 17 HDANOVA-0.8.3/HDANOVA/NEWS | 9 HDANOVA-0.8.3/HDANOVA/R/HDANOVA-package.R | 5 HDANOVA-0.8.3/HDANOVA/R/apca.R | 21 HDANOVA-0.8.3/HDANOVA/R/asca.R | 21 HDANOVA-0.8.3/HDANOVA/R/asca_plots.R | 6 HDANOVA-0.8.3/HDANOVA/R/asca_results.R | 19 HDANOVA-0.8.3/HDANOVA/R/biplot.asca.R |only HDANOVA-0.8.3/HDANOVA/R/extract_estimates.R |only HDANOVA-0.8.3/HDANOVA/R/hdanova.R |only HDANOVA-0.8.3/HDANOVA/R/limmpca.R | 25 HDANOVA-0.8.3/HDANOVA/R/msca.R | 21 HDANOVA-0.8.3/HDANOVA/R/pcanova.R | 8 HDANOVA-0.8.3/HDANOVA/R/pcanova_plots.R | 2 HDANOVA-0.8.3/HDANOVA/R/pcanova_results.R | 2 HDANOVA-0.8.3/HDANOVA/R/permutation.R |only HDANOVA-0.8.3/HDANOVA/R/sca.R |only HDANOVA-0.8.3/HDANOVA/R/signflip.R |only HDANOVA-0.8.3/HDANOVA/R/utilities.R | 4 HDANOVA-0.8.3/HDANOVA/R/wrappers.R | 2 HDANOVA-0.8.3/HDANOVA/inst/doc/vignette_C_ASCA.R | 24 HDANOVA-0.8.3/HDANOVA/inst/doc/vignette_C_ASCA.Rmd | 50 + HDANOVA-0.8.3/HDANOVA/inst/doc/vignette_C_ASCA.html | 557 ++++++++++--------- HDANOVA-0.8.3/HDANOVA/man/HDANOVA.Rd | 98 ++- HDANOVA-0.8.3/HDANOVA/man/apca.Rd | 18 HDANOVA-0.8.3/HDANOVA/man/asca.Rd | 17 HDANOVA-0.8.3/HDANOVA/man/asca_plots.Rd | 2 HDANOVA-0.8.3/HDANOVA/man/asca_results.Rd | 11 HDANOVA-0.8.3/HDANOVA/man/biplot.asca.Rd |only HDANOVA-0.8.3/HDANOVA/man/block.data.frame.Rd | 2 HDANOVA-0.8.3/HDANOVA/man/extended.model.frame.Rd | 2 HDANOVA-0.8.3/HDANOVA/man/extract_estimates.Rd |only HDANOVA-0.8.3/HDANOVA/man/limmpca.Rd | 10 HDANOVA-0.8.3/HDANOVA/man/msca.Rd | 17 HDANOVA-0.8.3/HDANOVA/man/pcanova.Rd | 4 HDANOVA-0.8.3/HDANOVA/man/pcanova_plots.Rd | 2 HDANOVA-0.8.3/HDANOVA/man/pcanova_results.Rd | 2 HDANOVA-0.8.3/HDANOVA/man/permutation.Rd |only HDANOVA-0.8.3/HDANOVA/man/prc.Rd | 2 HDANOVA-0.8.3/HDANOVA/man/sca.Rd |only HDANOVA-0.8.3/HDANOVA/man/signflip.Rd |only HDANOVA-0.8.3/HDANOVA/vignettes/vignette_B_ANOVA.tex |only HDANOVA-0.8.3/HDANOVA/vignettes/vignette_C_ASCA.Rmd | 50 + 47 files changed, 720 insertions(+), 396 deletions(-)
Title: Interactive Tables, Calendars and Charts for the Web
Description: Create interactive tables, calendars, charts and markdown WYSIWYG editor with 'TOAST UI' <https://ui.toast.com/> libraries to
integrate in 'shiny' applications or 'rmarkdown' 'HTML' documents.
Author: Victor Perrier [aut, cre, cph],
Fanny Meyer [aut],
NHN FE Development Lab [cph]
Maintainer: Victor Perrier <victor.perrier@dreamrs.fr>
Diff between toastui versions 0.3.4 dated 2024-09-18 and 0.4.0 dated 2025-04-03
DESCRIPTION | 8 MD5 | 50 +- NAMESPACE | 8 NEWS.md | 150 +++--- R/chart.R | 178 +++---- R/editor-proxy.R |only R/editor.R |only R/grid-editor.R | 422 ++++++++-------- R/grid-filters.R | 168 +++--- R/onLoad.R | 122 ++-- R/shiny.R | 286 ++++++----- README.md | 162 +++--- build/vignette.rds |binary inst/doc/toastui.R | 20 inst/doc/toastui.Rmd | 12 inst/doc/toastui.html | 796 ++++++++++++++++---------------- inst/examples/calendar-edit-schedules.R | 284 +++++------ inst/examples/calendar-popup-shiny.R | 234 ++++----- inst/htmlwidgets/datagrid.js | 2 inst/htmlwidgets/editor.js |only inst/htmlwidgets/editor.js.LICENSE.txt |only man/cal_proxy_toggle.Rd | 4 man/datagrid-shiny.Rd | 1 man/editor-proxy-show-hide.Rd |only man/editor-shiny.Rd |only man/editor.Rd |only man/editor_proxy.Rd |only man/editor_proxy_change_preview.Rd |only man/editor_proxy_insert.Rd |only man/figures/editor.png |only vignettes/figures/editor.png |only vignettes/toastui.Rmd | 12 32 files changed, 1508 insertions(+), 1411 deletions(-)
Title: Import and Export Data
Description: Import and export data from the most common statistical formats by using
R functions that guarantee the least loss of the data information, giving special
attention to the date variables and the labelled ones.
Author: Roger Pros [aut],
Isaac Subirana [aut, cre],
Joan Vila [ctb]
Maintainer: Isaac Subirana <isubirana@imim.es>
Diff between ImportExport versions 1.3 dated 2020-09-21 and 1.3.1 dated 2025-04-03
DESCRIPTION | 15 ++++++++++----- MD5 | 16 ++++++++-------- NEWS.md | 5 +++++ R/access_export.R | 3 ++- R/excel_export.R | 3 ++- R/spss_export.R | 3 ++- R/spss_import.R | 15 ++++++++++----- build/partial.rdb |binary man/excel_export.Rd | 5 ++++- 9 files changed, 43 insertions(+), 22 deletions(-)
Title: Standardized Git Repository Data
Description: Obtain standardized data from multiple 'Git' services, including 'GitHub' and 'GitLab'.
Designed to be 'Git' service-agnostic, this package assists teams with activities spread across various
'Git' platforms by providing a unified way to access repository data.
Author: Maciej Banas [aut, cre],
Kamil Koziej [aut],
Karolina Marcinkowska [aut],
Matt Secrest [aut]
Maintainer: Maciej Banas <banasmaciek@gmail.com>
Diff between GitStats versions 2.2.2 dated 2025-02-11 and 2.3.0 dated 2025-04-03
GitStats-2.2.2/GitStats/inst/package_usage_workflow.R |only GitStats-2.2.2/GitStats/inst/roche/roche_get_package_usage.R |only GitStats-2.2.2/GitStats/man/get_R_package_usage.Rd |only GitStats-2.2.2/GitStats/tests/testthat/_snaps/get_usage_R_package.md |only GitStats-2.2.2/GitStats/tests/testthat/test-get_usage_R_package.R |only GitStats-2.3.0/GitStats/DESCRIPTION | 6 GitStats-2.3.0/GitStats/MD5 | 171 +-- GitStats-2.3.0/GitStats/NAMESPACE | 5 GitStats-2.3.0/GitStats/NEWS.md | 20 GitStats-2.3.0/GitStats/R/EngineGraphQL.R | 54 + GitStats-2.3.0/GitStats/R/EngineGraphQLGitHub.R | 233 +++- GitStats-2.3.0/GitStats/R/EngineGraphQLGitLab.R | 225 +++- GitStats-2.3.0/GitStats/R/EngineRest.R | 35 GitStats-2.3.0/GitStats/R/EngineRestGitHub.R | 229 +--- GitStats-2.3.0/GitStats/R/EngineRestGitLab.R | 291 +---- GitStats-2.3.0/GitStats/R/GQLQueryGitHub.R | 153 +-- GitStats-2.3.0/GitStats/R/GQLQueryGitLab.R | 100 + GitStats-2.3.0/GitStats/R/GitHost.R | 510 ++++++---- GitStats-2.3.0/GitStats/R/GitHostGitHub.R | 28 GitStats-2.3.0/GitStats/R/GitHostGitLab.R | 32 GitStats-2.3.0/GitStats/R/GitStats.R | 388 +++++-- GitStats-2.3.0/GitStats/R/get_commits.R | 31 GitStats-2.3.0/GitStats/R/get_files.R | 9 GitStats-2.3.0/GitStats/R/get_issues.R |only GitStats-2.3.0/GitStats/R/get_orgs.R |only GitStats-2.3.0/GitStats/R/get_release_logs.R |only GitStats-2.3.0/GitStats/R/get_repos.R | 123 +- GitStats-2.3.0/GitStats/R/get_users.R |only GitStats-2.3.0/GitStats/R/gitstats_functions.R | 117 -- GitStats-2.3.0/GitStats/R/global.R | 2 GitStats-2.3.0/GitStats/R/message_handler.R | 4 GitStats-2.3.0/GitStats/R/test_helpers.R | 14 GitStats-2.3.0/GitStats/README.md | 112 +- GitStats-2.3.0/GitStats/inst/cache_workflow.R | 10 GitStats-2.3.0/GitStats/inst/doc/get_repos_with_code.R | 54 - GitStats-2.3.0/GitStats/inst/doc/get_repos_with_code.Rmd | 2 GitStats-2.3.0/GitStats/inst/doc/get_repos_with_code.html | 2 GitStats-2.3.0/GitStats/inst/doc/set_hosts.R | 82 - GitStats-2.3.0/GitStats/inst/get_issues_workflow.R |only GitStats-2.3.0/GitStats/inst/get_orgs_workflow.R |only GitStats-2.3.0/GitStats/inst/get_repos_with_R_packages.R |only GitStats-2.3.0/GitStats/inst/roche/roche_api.R |only GitStats-2.3.0/GitStats/inst/roche/roche_get_files_workflow.R | 28 GitStats-2.3.0/GitStats/inst/roche/roche_get_orgs.R |only GitStats-2.3.0/GitStats/inst/roche/roche_get_repos_with_R_package.R |only GitStats-2.3.0/GitStats/inst/roche/roche_get_repos_workflow.R | 46 GitStats-2.3.0/GitStats/man/get_commits.Rd | 4 GitStats-2.3.0/GitStats/man/get_commits_stats.Rd | 2 GitStats-2.3.0/GitStats/man/get_issues.Rd |only GitStats-2.3.0/GitStats/man/get_issues_stats.Rd |only GitStats-2.3.0/GitStats/man/get_orgs.Rd |only GitStats-2.3.0/GitStats/man/get_release_logs.Rd | 4 GitStats-2.3.0/GitStats/man/get_repos_with_R_packages.Rd |only GitStats-2.3.0/GitStats/man/get_users.Rd | 2 GitStats-2.3.0/GitStats/tests/testthat/_snaps/00-get_orgs-GitHub.md |only GitStats-2.3.0/GitStats/tests/testthat/_snaps/00-get_orgs-GitLab.md |only GitStats-2.3.0/GitStats/tests/testthat/_snaps/00-get_orgs-GitStats.md |only GitStats-2.3.0/GitStats/tests/testthat/_snaps/01-get_repos-GitHub.md | 53 - GitStats-2.3.0/GitStats/tests/testthat/_snaps/01-get_repos-GitLab.md | 17 GitStats-2.3.0/GitStats/tests/testthat/_snaps/01-get_repos-GitStats.md |only GitStats-2.3.0/GitStats/tests/testthat/_snaps/02-get_commits-GitHub.md | 8 GitStats-2.3.0/GitStats/tests/testthat/_snaps/02-get_commits-GitLab.md | 4 GitStats-2.3.0/GitStats/tests/testthat/_snaps/02-get_commits-GitStats.md | 8 GitStats-2.3.0/GitStats/tests/testthat/_snaps/04-get_files_content-GitLab.md | 10 GitStats-2.3.0/GitStats/tests/testthat/_snaps/05-get_files.md | 8 GitStats-2.3.0/GitStats/tests/testthat/_snaps/06-get_issues-GitHub.md |only GitStats-2.3.0/GitStats/tests/testthat/_snaps/06-get_issues-GitLab.md |only GitStats-2.3.0/GitStats/tests/testthat/_snaps/06-get_issues-GitStats.md |only GitStats-2.3.0/GitStats/tests/testthat/_snaps/get_issues_stats.md |only GitStats-2.3.0/GitStats/tests/testthat/_snaps/get_release-GitHub.md | 8 GitStats-2.3.0/GitStats/tests/testthat/_snaps/get_release-GitLab.md | 4 GitStats-2.3.0/GitStats/tests/testthat/_snaps/get_release-GitStats.md |only GitStats-2.3.0/GitStats/tests/testthat/_snaps/get_repos_with_R_packages.md |only GitStats-2.3.0/GitStats/tests/testthat/_snaps/get_urls_repos-GitHub.md | 4 GitStats-2.3.0/GitStats/tests/testthat/_snaps/get_urls_repos-GitStats.md |only GitStats-2.3.0/GitStats/tests/testthat/_snaps/get_users-GitStats.md |only GitStats-2.3.0/GitStats/tests/testthat/_snaps/set_host.md | 26 GitStats-2.3.0/GitStats/tests/testthat/helper-expect-responses.R | 94 + GitStats-2.3.0/GitStats/tests/testthat/helper-expect-tables.R | 23 GitStats-2.3.0/GitStats/tests/testthat/helper-fixtures.R | 201 +++ GitStats-2.3.0/GitStats/tests/testthat/setup.R | 35 GitStats-2.3.0/GitStats/tests/testthat/test-00-get_orgs-GitHub.R |only GitStats-2.3.0/GitStats/tests/testthat/test-00-get_orgs-GitLab.R |only GitStats-2.3.0/GitStats/tests/testthat/test-00-get_orgs-GitStats.R |only GitStats-2.3.0/GitStats/tests/testthat/test-01-get_repos-GitHub.R | 439 ++------ GitStats-2.3.0/GitStats/tests/testthat/test-01-get_repos-GitLab.R | 217 +--- GitStats-2.3.0/GitStats/tests/testthat/test-01-get_repos-GitStats.R | 115 +- GitStats-2.3.0/GitStats/tests/testthat/test-02-get_commits-GitHub.R | 6 GitStats-2.3.0/GitStats/tests/testthat/test-02-get_commits-GitStats.R | 44 GitStats-2.3.0/GitStats/tests/testthat/test-03-get_files_structure-GitHub.R | 121 +- GitStats-2.3.0/GitStats/tests/testthat/test-03-get_files_structure-GitLab.R | 141 +- GitStats-2.3.0/GitStats/tests/testthat/test-04-get_files_content-GitLab.R | 24 GitStats-2.3.0/GitStats/tests/testthat/test-05-get_files.R | 18 GitStats-2.3.0/GitStats/tests/testthat/test-06-get_issues-GitHub.R |only GitStats-2.3.0/GitStats/tests/testthat/test-06-get_issues-GitLab.R |only GitStats-2.3.0/GitStats/tests/testthat/test-06-get_issues-GitStats.R |only GitStats-2.3.0/GitStats/tests/testthat/test-get_issues_stats.R |only GitStats-2.3.0/GitStats/tests/testthat/test-get_release-GitHub.R | 6 GitStats-2.3.0/GitStats/tests/testthat/test-get_release-GitStats.R | 31 GitStats-2.3.0/GitStats/tests/testthat/test-get_repos_with_R_packages.R |only GitStats-2.3.0/GitStats/tests/testthat/test-get_storage.R | 5 GitStats-2.3.0/GitStats/tests/testthat/test-get_urls_repos-GitHub.R | 6 GitStats-2.3.0/GitStats/tests/testthat/test-get_urls_repos-GitLab.R | 6 GitStats-2.3.0/GitStats/tests/testthat/test-get_urls_repos-GitStats.R | 19 GitStats-2.3.0/GitStats/tests/testthat/test-get_users-GitStats.R | 34 GitStats-2.3.0/GitStats/vignettes/get_repos_with_code.Rmd | 2 106 files changed, 2886 insertions(+), 1979 deletions(-)
Title: Easily Send HTML Email Messages
Description: Compose and send out responsive HTML email messages that render
perfectly across a range of email clients and device sizes. Helper functions
let the user insert embedded images, web link buttons, and 'ggplot2' plot
objects into the message body. Messages can be sent through an 'SMTP'
server, through the 'Posit Connect' service, or through the 'Mailgun' API
service <https://www.mailgun.com/>.
Author: Richard Iannone [aut, cre] ,
Joe Cheng [aut],
Jeroen Ooms [ctb] ,
Ted Goas [cph] ,
Posit Software, PBC [cph, fnd]
Maintainer: Richard Iannone <rich@posit.co>
Diff between blastula versions 0.3.5 dated 2024-02-24 and 0.3.6 dated 2025-04-03
blastula-0.3.5/blastula/tests/testthat/test-add_readable_time.R |only blastula-0.3.5/blastula/tests/testthat/test-credentials.R |only blastula-0.3.5/blastula/tests/testthat/test-html_manip.R |only blastula-0.3.5/blastula/tests/testthat/test-mime.R |only blastula-0.3.5/blastula/tests/testthat/test-utils.R |only blastula-0.3.5/blastula/tests/testthat/test-utils.Rmd |only blastula-0.3.6/blastula/DESCRIPTION | 10 +- blastula-0.3.6/blastula/MD5 | 36 ++++------ blastula-0.3.6/blastula/NAMESPACE | 4 + blastula-0.3.6/blastula/NEWS.md | 8 ++ blastula-0.3.6/blastula/R/block_articles.R | 5 + blastula-0.3.6/blastula/R/connect_email.R | 12 +-- blastula-0.3.6/blastula/R/mime.R | 8 +- blastula-0.3.6/blastula/R/prepare_rsc_example_files.R | 6 - blastula-0.3.6/blastula/R/render_email.R | 2 blastula-0.3.6/blastula/inst/examples/connect-example-main.Rmd | 4 - blastula-0.3.6/blastula/inst/examples/connect-example-text-only.Rmd | 4 - blastula-0.3.6/blastula/man/attach_connect_email.Rd | 6 - blastula-0.3.6/blastula/man/prepare_rsc_example_files.Rd | 6 - blastula-0.3.6/blastula/man/render_email.Rd | 2 blastula-0.3.6/blastula/man/suppress_scheduled_email.Rd | 2 blastula-0.3.6/blastula/tests/testthat/test-connect_emailing.R | 2 22 files changed, 66 insertions(+), 51 deletions(-)
Title: C5.0 Decision Trees and Rule-Based Models
Description: C5.0 decision trees and rule-based models for pattern
recognition that extend the work of Quinlan (1993,
ISBN:1-55860-238-0).
Author: Max Kuhn [aut, cre],
Steve Weston [ctb],
Mark Culp [ctb],
Nathan Coulter [ctb],
Ross Quinlan [aut] ,
RuleQuest Research [cph] ,
Rulequest Research Pty Ltd. [cph]
Maintainer: Max Kuhn <mxkuhn@gmail.com>
Diff between C50 versions 0.1.8 dated 2023-02-08 and 0.2.0 dated 2025-04-03
DESCRIPTION | 10 MD5 | 70 ++--- NEWS.md | 4 build/vignette.rds |binary inst/doc/C5.0.html | 416 +++------------------------------- inst/doc/Class_Probability_Calcs.R | 2 inst/doc/Class_Probability_Calcs.html | 398 ++------------------------------ src/attwinnow.c | 27 +- src/classify.c | 61 ++-- src/confmat.c | 6 src/construct.c | 17 - src/contin.c | 8 src/defns.h | 14 - src/discr.c | 6 src/formrules.c | 8 src/formtree.c | 83 +++--- src/getdata.c | 24 - src/getnames.c | 15 - src/global.c | 2 src/implicitatt.c | 69 ++--- src/info.c | 8 src/modelfiles.c | 30 +- src/p-thresh.c | 9 src/prune.c | 21 - src/rc50.c | 8 src/rsample.c | 8 src/rulebasedmodels.c | 31 +- src/rules.c | 26 +- src/ruletree.c | 10 src/siftrules.c | 32 +- src/strbuf.h | 12 src/subset.c | 14 - src/text.h | 2 src/trees.c | 10 src/utility.c | 146 +++++------ src/xval.c | 4 36 files changed, 468 insertions(+), 1143 deletions(-)
Title: 'Amber' Electronic Data Capture Client
Description: 'Amber' is a server application for capturing electronic data records.
Rich forms are used to collect data. This 'Amber' client allows
to perform data extraction for reporting or data transfer at persistent location
purposes.
Author: Yannick Marcon [aut, cre] ,
OBiBa group [cph]
Maintainer: Yannick Marcon <yannick.marcon@obiba.org>
Diff between amberr versions 1.1.0 dated 2024-07-05 and 1.2.0 dated 2025-04-03
DESCRIPTION | 12 +- MD5 | 52 ++++++----- NAMESPACE | 11 ++ R/amber.interviews.R | 155 ++++++++++++++++++++++++++++++++++- R/amber.tasks.R |only README.md | 2 man/amber.campaign.Rd | 3 man/amber.campaigns.Rd | 3 man/amber.case_report_export.Rd | 3 man/amber.case_report_form.Rd | 3 man/amber.case_report_forms.Rd | 3 man/amber.case_reports.Rd | 3 man/amber.form.Rd | 3 man/amber.form_revision.Rd | 3 man/amber.form_revisions.Rd | 3 man/amber.forms.Rd | 3 man/amber.interview_design.Rd | 3 man/amber.interview_designs.Rd | 3 man/amber.interview_export.Rd | 3 man/amber.interviews.Rd | 6 + man/amber.interviews_step_actions.Rd |only man/amber.interviews_step_data.Rd |only man/amber.interviews_steps.Rd |only man/amber.participant.Rd | 3 man/amber.participants.Rd | 3 man/amber.studies.Rd | 3 man/amber.study.Rd | 3 man/amber.task.Rd |only man/amber.task_logs.Rd |only man/amber.tasks.Rd |only man/amber.tasks_logs.Rd |only 31 files changed, 258 insertions(+), 31 deletions(-)
Title: Addons for the 'mclust' Package
Description: Extend the functionality of the 'mclust' package for Gaussian
finite mixture modeling by including: density estimation for data with
bounded support (Scrucca, 2019 <doi:10.1002/bimj.201800174>); modal
clustering using MEM (Modal EM) algorithm for Gaussian mixtures
(Scrucca, 2021 <doi:10.1002/sam.11527>); entropy estimation via
Gaussian mixture modeling (Robin & Scrucca, 2023
<doi:10.1016/j.csda.2022.107582>); Gaussian mixtures modeling of
financial log-returns (Scrucca, 2024 <doi:10.3390/e26110907>).
Author: Luca Scrucca [aut, cre, cph]
Maintainer: Luca Scrucca <luca.scrucca@unibo.it>
Diff between mclustAddons versions 0.9.1 dated 2024-11-13 and 0.9.2 dated 2025-04-03
DESCRIPTION | 12 ++++----- MD5 | 22 ++++++++--------- NEWS.md | 6 ++++ R/GMM_finance.R | 3 -- R/MclustBounded.R | 20 ++++----------- R/ModalEM.R | 4 +-- R/densityMclustBounded.R | 58 ++++++++++++++++++++++++++++----------------- build/partial.rdb |binary build/vignette.rds |binary inst/doc/mclustAddons.html | 42 ++++++++++++++++---------------- man/MclustBounded.Rd | 6 ++-- man/rangepowerTransform.Rd | 4 +-- 12 files changed, 95 insertions(+), 82 deletions(-)
Title: Delayed Read for 'GDAL' Vector Data Sources
Description: Lazy read for drawings. A 'dplyr' back end for data sources supported by
'GDAL' vector drivers, that allows working with local or remote sources as if they
are in-memory data frames. Basic features works with any drawing format ('GDAL vector
data source') supported by the 'sf' package.
Author: Michael Sumner [aut, cre]
Maintainer: Michael Sumner <mdsumner@gmail.com>
Diff between lazysf versions 0.1.0 dated 2020-11-14 and 0.2.0 dated 2025-04-03
DESCRIPTION | 14 - MD5 | 44 ++-- NEWS.md | 6 R/SFSQLConnection.R | 13 + R/SFSQLDriver.R | 6 R/SFSQLResult.R | 4 R/connect.R | 2 R/lazysf-package.R | 1 R/lazysf.R | 2 README.md | 158 +++++++++-------- build/vignette.rds |binary inst/doc/GDALSQL.R | 2 inst/doc/GDALSQL.Rmd | 12 - inst/doc/GDALSQL.html | 337 +++++++++++++++++-------------------- inst/misc/SFSQL_PGDriver.R | 4 man/SFSQL.Rd | 2 man/SFSQLConnection-class.Rd | 2 man/SFSQLDriver-class.Rd | 6 man/SFSQLResult-class.Rd | 4 man/figures/README-sf-action-1.png |binary man/lazysf-package.Rd | 11 - man/lazysf.Rd | 2 vignettes/GDALSQL.Rmd | 12 - 23 files changed, 326 insertions(+), 318 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-08-19 1.4.0
2023-03-02 1.3.0
2022-04-01 1.1.1
Title: Helper Tools for Managing Data, Dates, Missing Values, and Text
Description: An assortment of helper functions for managing data (e.g.,
rotating values in matrices by a user-defined angle, switching from
row- to column-indexing), dates (e.g., intuiting year from messy date
strings), handling missing values (e.g., removing elements/rows across
multiple vectors or matrices if any have an NA), text (e.g.,
flushing reports to the console in real-time); and combining data frames
with different schema (copying, filling, or concatenating columns or
applying functions before combining).
Author: Adam B. Smith [cre, aut]
Maintainer: Adam B. Smith <adam.smith@mobot.org>
Diff between omnibus versions 1.2.14 dated 2024-09-17 and 1.2.15 dated 2025-04-03
omnibus-1.2.14/omnibus/R/ellipseNames.r |only omnibus-1.2.14/omnibus/man/ellipseNames.Rd |only omnibus-1.2.15/omnibus/DESCRIPTION | 13 - omnibus-1.2.15/omnibus/MD5 | 99 +++++------ omnibus-1.2.15/omnibus/NAMESPACE | 2 omnibus-1.2.15/omnibus/NEWS.md | 7 omnibus-1.2.15/omnibus/R/cull.r | 4 omnibus-1.2.15/omnibus/R/memUse.r | 14 - omnibus-1.2.15/omnibus/R/omnibus.r | 2 omnibus-1.2.15/omnibus/R/runifMatrix.r |only omnibus-1.2.15/omnibus/R/screenRes.r |only omnibus-1.2.15/omnibus/README.md | 28 +-- omnibus-1.2.15/omnibus/man/bracket.Rd | 96 +++++----- omnibus-1.2.15/omnibus/man/capIt.Rd | 48 ++--- omnibus-1.2.15/omnibus/man/combineDf.Rd | 170 +++++++++--------- omnibus-1.2.15/omnibus/man/corner.Rd | 64 +++---- omnibus-1.2.15/omnibus/man/countDecDigits.Rd | 40 ++-- omnibus-1.2.15/omnibus/man/cull.Rd | 52 ++--- omnibus-1.2.15/omnibus/man/dirCreate.Rd | 40 ++-- omnibus-1.2.15/omnibus/man/domLeap.Rd | 40 ++-- omnibus-1.2.15/omnibus/man/domNonLeap.Rd | 40 ++-- omnibus-1.2.15/omnibus/man/doyLeap.Rd | 40 ++-- omnibus-1.2.15/omnibus/man/doyNonLeap.Rd | 40 ++-- omnibus-1.2.15/omnibus/man/eps.Rd | 34 +-- omnibus-1.2.15/omnibus/man/figures |only omnibus-1.2.15/omnibus/man/insert.Rd | 72 ++++---- omnibus-1.2.15/omnibus/man/insertCol.Rd | 104 +++++------ omnibus-1.2.15/omnibus/man/isLeapYear.Rd | 42 ++-- omnibus-1.2.15/omnibus/man/isTRUENA.Rd | 82 ++++----- omnibus-1.2.15/omnibus/man/listFiles.Rd | 54 +++--- omnibus-1.2.15/omnibus/man/longRun.Rd | 64 +++---- omnibus-1.2.15/omnibus/man/maxRuns.Rd | 100 +++++------ omnibus-1.2.15/omnibus/man/memUse.Rd | 68 +++---- omnibus-1.2.15/omnibus/man/mergeLists.Rd | 66 +++---- omnibus-1.2.15/omnibus/man/mirror.Rd | 74 ++++---- omnibus-1.2.15/omnibus/man/mmode.Rd | 50 ++--- omnibus-1.2.15/omnibus/man/naCompare.Rd | 160 ++++++++--------- omnibus-1.2.15/omnibus/man/naOmitMulti.Rd | 52 ++--- omnibus-1.2.15/omnibus/man/naRows.Rd | 50 ++--- omnibus-1.2.15/omnibus/man/omnibus.Rd | 215 ++++++++++++----------- omnibus-1.2.15/omnibus/man/pairDist.Rd | 64 +++---- omnibus-1.2.15/omnibus/man/prefix.Rd | 52 ++--- omnibus-1.2.15/omnibus/man/quadArea.Rd | 56 +++--- omnibus-1.2.15/omnibus/man/renumSeq.Rd | 64 +++---- omnibus-1.2.15/omnibus/man/rotateMatrix.Rd | 62 +++--- omnibus-1.2.15/omnibus/man/roundTo.Rd | 60 +++--- omnibus-1.2.15/omnibus/man/roundedSigDigits.Rd | 194 ++++++++++----------- omnibus-1.2.15/omnibus/man/rowColIndexing.Rd | 76 ++++---- omnibus-1.2.15/omnibus/man/runifMatrix.Rd |only omnibus-1.2.15/omnibus/man/say.Rd | 98 +++++----- omnibus-1.2.15/omnibus/man/screenRes.Rd |only omnibus-1.2.15/omnibus/man/stretchMinMax.Rd | 98 +++++----- omnibus-1.2.15/omnibus/man/which.pmax.Rd | 90 +++++----- omnibus-1.2.15/omnibus/man/yearFromDate.Rd | 224 ++++++++++++------------- 54 files changed, 1636 insertions(+), 1628 deletions(-)