Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-06-15 0.3.2
2016-12-18 0.3
2015-09-23 0.2.7
2015-05-23 0.2-6
2014-12-03 0.2
2014-08-11 0.1.6
2014-03-24 0.1.3
2014-03-10 0.1.2-8
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-06-11 1.0-1
2020-05-06 0.1-5
Title: Graphics in the Context of Analyzing High-Throughput Data
Description: Additional options for making graphics in the context of analyzing high-throughput data are available here.
This includes automatic segmenting of the current device (eg window) to accommodate multiple new plots,
automatic checking for optimal location of legends in plots, small histograms to insert as legends,
histograms re-transforming axis labels to linear when plotting log2-transformed data,
a violin-plot <doi:10.1080/00031305.1998.10480559> function for a wide variety of input-formats,
principal components analysis (PCA) <doi:10.1080/14786440109462720> with bag-plots <doi:10.1080/00031305.1999.10474494> to highlight and compare the center areas for groups of samples,
generic MA-plots (differential- versus average-value plots) <doi:10.1093/nar/30.4.e15>,
staggered count plots and generation of mouse-over interactive html pages.
Author: Wolfgang Raffelsberger [aut, cre]
Maintainer: Wolfgang Raffelsberger <w.raffelsberger@gmail.com>
Diff between wrGraph versions 1.3.8 dated 2024-11-21 and 1.3.9 dated 2025-04-01
DESCRIPTION | 6 +- MD5 | 12 ++--- R/addBagPlot.R | 8 +-- R/plotPCAw.R | 25 +++++++---- build/vignette.rds |binary inst/doc/wrGraphVignette1.html | 93 ++++++++++++++++++----------------------- man/addBagPlot.Rd | 2 7 files changed, 73 insertions(+), 73 deletions(-)
Title: Utilities for Interacting with the 'CTX' APIs
Description: Access chemical, hazard, bioactivity, and exposure data from the
Computational Toxicology and Exposure ('CTX') APIs
<https://www.epa.gov/comptox-tools/computational-toxicology-and-exposure-apis>.
'ctxR' was developed to streamline the process of accessing the information
available through the 'CTX' APIs without requiring prior knowledge of how to
use APIs. Most data is also available on the CompTox Chemical Dashboard
('CCD') <https://comptox.epa.gov/dashboard/> and other resources found at the
EPA Computational Toxicology and Exposure Online Resources
<https://www.epa.gov/comptox-tools>.
Author: Paul Kruse [aut] ,
Caroline Ring [aut] ,
Madison Feshuk [ctb] ,
Carter Thunes [ctb],
Jason Brown [cre]
Maintainer: Jason Brown <brown.jason@epa.gov>
Diff between ctxR versions 1.1.0 dated 2025-01-08 and 1.1.1 dated 2025-04-01
DESCRIPTION | 16 MD5 | 172 NEWS.md | 6 build/vignette.rds |binary inst/doc/Bioactivity.html | 2 inst/doc/Chemical.html | 2 inst/doc/Exposure.html | 2 inst/doc/Hazard.html | 2 inst/doc/Introduction.html | 2 tests/testthat/bioactivity/bioactivity/data/search/by-aeid/1.json | 6 tests/testthat/chemical-batch/chemical/detail/search/by-dtxcid/DTXCID30182-9e51f1.json | 78 tests/testthat/chemical-batch/chemical/detail/search/by-dtxsid-9e51f1-ddb193-POST.json | 6 tests/testthat/chemical-batch/chemical/fate/search/by-dtxsid-cd40e5-POST.json | 862 tests/testthat/chemical-batch/chemical/fate/search/by-dtxsid-ddb193-POST.json | 6 tests/testthat/chemical-batch/chemical/file/mol/search/by-dtxcid/DTXCID30182.txt | 94 tests/testthat/chemical-batch/chemical/file/mol/search/by-dtxsid/DTXSID7020182.txt | 94 tests/testthat/chemical-batch/chemical/ghslink/to-dtxsid-cd40e5-POST.json | 14 tests/testthat/chemical-batch/chemical/list/chemicals/search/contain/Biosolids2021/Bis.json | 126 tests/testthat/chemical-batch/chemical/list/chemicals/search/equal/Biosolids2021/Bis.json | 6 tests/testthat/chemical-batch/chemical/list/chemicals/search/start-with/Biosolids2021/Bis.json | 60 tests/testthat/chemical-batch/chemical/list/search/by-dtxsid/DTXSID7020182.json | 3700 +- tests/testthat/chemical-batch/chemical/list/search/by-name/BIOSOLIDS2021.json | 24 tests/testthat/chemical-batch/chemical/list/search/by-type/federal.json | 3964 +- tests/testthat/chemical-batch/chemical/msready/search/by-dtxcid/DTXCID30182.json | 52 tests/testthat/chemical-batch/chemical/msready/search/by-formula/8x.json | 6 tests/testthat/chemical-batch/chemical/msready/search/by-formula/CH4.json | 406 tests/testthat/chemical-batch/chemical/msready/search/by-mass-8e72d4-POST.json | 16 tests/testthat/chemical-batch/chemical/msready/search/by-mass/1/1.json | 6 tests/testthat/chemical-batch/chemical/msready/search/by-mass/16.0313/16.0314.json | 406 tests/testthat/chemical-batch/chemical/msready/search/by-mass/16.0314/16.0314.json | 6 tests/testthat/chemical-batch/chemical/property/search/by-dtxsid-cd40e5-POST.json | 1036 tests/testthat/chemical-batch/chemical/property/search/by-dtxsid-ddb193-POST.json | 6 tests/testthat/chemical-batch/chemical/search/equal-a5c27e-POST.json | 34 tests/testthat/chemical-batch/chemical/search/equal-b2fb80-POST.json | 42 tests/testthat/chemical-batch/chemical/synonym/search/by-dtxsid-ddb193-POST.json | 6 tests/testthat/chemical/chemical/file/mol/search/by-dtxcid/DTXCID30182.txt | 94 tests/testthat/chemical/chemical/file/mol/search/by-dtxsid/DTXSID7020182.txt | 94 tests/testthat/chemical/chemical/ghslink/to-dtxsid/DTXSID7020182.json | 10 tests/testthat/chemical/chemical/list/chemicals/search/equal/Biosolids2021/Bisphenol%20A.json | 6 tests/testthat/chemical/chemical/list/chemicals/search/equal/Biosolids2021/zy.json | 6 tests/testthat/chemical/chemical/list/chemicals/search/start-with/CCL4/Bi.json | 22 tests/testthat/chemical/chemical/list/chemicals/search/start-with/CCL4/zy.json | 6 tests/testthat/chemical/chemical/list/search/by-name/Biosolids2021.json | 24 tests/testthat/chemical/chemical/msready/search/by-dtxcid/DTXCID30182.json | 52 tests/testthat/chemical/chemical/msready/search/by-formula/8x.json | 6 tests/testthat/chemical/chemical/msready/search/by-formula/CH4.json | 406 tests/testthat/chemical/chemical/msready/search/by-mass/1/4.json | 6 tests/testthat/chemical/chemical/msready/search/by-mass/16.0313/16.0314.json | 406 tests/testthat/chemical/chemical/msready/search/by-mass/16.0314/16.0314.json | 6 tests/testthat/chemical/chemical/property/search/by-dtxsid/DTXSID.json | 6 tests/testthat/chemical/chemical/property/search/by-dtxsid/DTXSID7020182-f7c7b7.json | 772 tests/testthat/exposure-batch/exposure/fun-use/probability/search/by-dtxsid/DTXSID7020182.json | 100 tests/testthat/exposure-batch/exposure/fun-use/search/by-dtxsid/DTXSID7020182.json | 724 tests/testthat/exposure-batch/exposure/list-presence/search/by-dtxsid/DTXSID7020182.json | 1278 tests/testthat/exposure-batch/exposure/product-data/search/by-dtxsid/DTXSID7020182.json |12394 +++--- tests/testthat/exposure/exposure/fun-use/category.json | 1284 tests/testthat/exposure/exposure/fun-use/probability/search/by-dtxsid/DTXSID7020182.json | 100 tests/testthat/exposure/exposure/fun-use/search/by-dtxsid/DTXSID7020182.json | 724 tests/testthat/exposure/exposure/list-presence/search/by-dtxsid/DTXSID7020182.json | 1278 tests/testthat/exposure/exposure/list-presence/tags.json | 1876 - tests/testthat/exposure/exposure/product-data/puc.json | 7028 +-- tests/testthat/exposure/exposure/product-data/search/by-dtxsid/DTXSID7020182.json |12394 +++--- tests/testthat/hazard-batch/hazard/cancer-summary/search/by-dtxsid-cd40e5-POST.json | 6 tests/testthat/hazard-batch/hazard/cancer-summary/search/by-dtxsid-ddb193-POST.json | 6 tests/testthat/hazard-batch/hazard/eco/search/by-dtxsid-ddb193-POST.json | 6 tests/testthat/hazard-batch/hazard/genetox/details/search/by-dtxsid-ddb193-POST.json | 6 tests/testthat/hazard-batch/hazard/genetox/summary/search/by-dtxsid-ddb193-POST.json | 6 tests/testthat/hazard-batch/hazard/human/search/by-dtxsid-ddb193-POST.json | 6 tests/testthat/hazard-batch/hazard/search/by-dtxsid-ddb193-POST.json | 6 tests/testthat/hazard-batch/hazard/skin-eye/search/by-dtxsid-ddb193-POST.json | 6 vignettes/4/0/bioactivity/assay/search/by-aeid/700.json | 156 vignettes/4/0/bioactivity/assay/search/by-aeid/891.json | 162 vignettes/4/0/bioactivity/data/search/by-aeid/704.json |18414 +++++----- vignettes/4/0/bioactivity/data/search/by-dtxsid/DTXSID30944145.json | 2128 - vignettes/4/0/bioactivity/data/search/by-m4id/739695.json | 430 vignettes/4/0/bioactivity/data/search/by-spid/TP0000904H05.json | 3430 - vignettes/4/0/bioactivity/data/summary/search/by-aeid/700.json | 14 vignettes/4/0/bioactivity/data/summary/search/by-aeid/759.json | 14 vignettes/4/0/bioactivity/data/summary/search/by-aeid/891.json | 14 vignettes/5/0/exposure/fun-use/category.json | 1284 vignettes/5/0/exposure/fun-use/probability/search/by-dtxsid/DTXSID0020232.json | 36 vignettes/5/0/exposure/fun-use/probability/search/by-dtxsid/DTXSID7020182.json | 100 vignettes/5/0/exposure/fun-use/search/by-dtxsid/DTXSID7020182.json | 724 vignettes/5/0/exposure/list-presence/search/by-dtxsid/DTXSID7020182.json | 1278 vignettes/5/0/exposure/list-presence/tags.json | 1876 - vignettes/5/0/exposure/product-data/puc.json | 7028 +-- vignettes/5/0/exposure/product-data/search/by-dtxsid/DTXSID7020182.json |12394 +++--- 87 files changed, 50952 insertions(+), 50946 deletions(-)
Title: Proteomics Data Analysis Functions
Description: Data analysis of proteomics experiments by mass spectrometry is supported by this collection of functions mostly dedicated to the analysis of (bottom-up) quantitative (XIC) data.
Fasta-formatted proteomes (eg from UniProt Consortium <doi:10.1093/nar/gky1049>) can be read with automatic parsing and multiple annotation types (like species origin, abbreviated gene names, etc) extracted.
Initial results from multiple software for protein (and peptide) quantitation can be imported (to a common format):
MaxQuant (Tyanova et al 2016 <doi:10.1038/nprot.2016.136>), Dia-NN (Demichev et al 2020 <doi:10.1038/s41592-019-0638-x>),
Fragpipe (da Veiga et al 2020 <doi:10.1038/s41592-020-0912-y>), ionbot (Degroeve et al 2021 <doi:10.1101/2021.07.02.450686>),
MassChroq (Valot et al 2011 <doi:10.1002/pmic.201100120>),
OpenMS (Strauss et al 2021 <doi:10.1038/nmeth.3959>), ProteomeDiscoverer (Orsburn 2021 <doi:10.3390/proteomes9010015>),
Proline (Bouyssie et a [...truncated...]
Author: Wolfgang Raffelsberger [aut, cre]
Maintainer: Wolfgang Raffelsberger <w.raffelsberger@gmail.com>
Diff between wrProteo versions 1.13.0 dated 2024-11-18 and 1.13.1 dated 2025-04-01
DESCRIPTION | 6 MD5 | 32 - R/getUPS1acc.R | 4 R/readAlphaPeptFile.R | 9 R/readMaxQuantFile.R | 2 R/readProteomeDiscovererFile.R | 48 + R/readProteomeDiscovererPeptides.R | 7 build/vignette.rds |binary inst/doc/wrProteoVignette1.R | 22 inst/doc/wrProteoVignette1.Rmd | 6 inst/doc/wrProteoVignette1.html | 245 +++----- inst/doc/wrProteoVignetteUPS1.R | 32 - inst/doc/wrProteoVignetteUPS1.Rmd | 2 inst/doc/wrProteoVignetteUPS1.html | 1130 ++++++++++++++++++------------------- man/getUPS1acc.Rd | 4 vignettes/wrProteoVignette1.Rmd | 6 vignettes/wrProteoVignetteUPS1.Rmd | 2 17 files changed, 767 insertions(+), 790 deletions(-)
Title: Fast and Simple 'MongoDB' Client for R
Description: High-performance MongoDB client based on 'mongo-c-driver' and 'jsonlite'.
Includes support for aggregation, indexing, map-reduce, streaming, encryption,
enterprise authentication, and GridFS. The online user manual provides an overview
of the available methods in the package: <https://jeroen.github.io/mongolite/>.
Author: Jeroen Ooms [aut, cre] ,
MongoDB, Inc [cph]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>
Diff between mongolite versions 3.1.2 dated 2025-03-17 and 4.0.0 dated 2025-04-01
DESCRIPTION | 6 ++-- MD5 | 13 +++++----- NEWS | 3 ++ src/Makevars.in | 2 - src/Makevars.win | 56 ++++++++++++++++++++++++++++---------------- src/mongoc/mongoc-openssl.c | 2 - src/osx/Makevars | 2 - tools |only 8 files changed, 52 insertions(+), 32 deletions(-)
Title: Orchestration of Data Pipelines
Description: Framework for creating and orchestrating data pipelines. Organize, orchestrate, and monitor multiple pipelines in a single project. Use tags to decorate functions with scheduling parameters and configuration.
Author: Will Hipson [cre, aut, cph] ,
Ryan Garnett [aut, ctb, cph]
Maintainer: Will Hipson <will.e.hipson@gmail.com>
Diff between maestro versions 0.5.2 dated 2025-03-14 and 0.5.3 dated 2025-04-01
DESCRIPTION | 6 +- MD5 | 15 ++--- NEWS.md | 6 ++ R/MaestroPipeline.R | 8 ++ inst/doc/maestro-1-quick-start.html | 20 ++----- inst/doc/maestro-4-advanced-scheduling.html | 12 ++-- inst/doc/maestro-5-directed-acyclic-graphs.html | 22 ++++---- inst/doc/maestro-6-logging.html | 66 ++++++++++++------------ vignettes/maestro-8-tag-reference.html |only 9 files changed, 80 insertions(+), 75 deletions(-)
Title: Run Interruptible Code Asynchronously
Description: Takes an R expression and returns a Job object with a $stop() method
which can be called to terminate the background job. Also provides timeouts
and other mechanisms for automatically terminating a background job. The
result of the expression is available synchronously via $result or
asynchronously with callbacks or through the 'promises' package framework.
Author: Daniel P. Smith [aut, cre] ,
Alkek Center for Metagenomics and Microbiome Research [cph, fnd]
Maintainer: Daniel P. Smith <dansmith01@gmail.com>
Diff between jobqueue versions 1.5.1 dated 2025-02-28 and 1.6.0 dated 2025-04-01
DESCRIPTION | 8 - MD5 | 16 +-- NAMESPACE | 2 NEWS.md | 6 + R/process.r | 201 +++++++++++++++++++++++------------------- R/utils.r | 2 R/validate.r | 7 + build/vignette.rds |binary tests/testthat/test-process.r | 60 ++++++++++-- 9 files changed, 187 insertions(+), 115 deletions(-)
Title: Interface to 'Glassdoor' API
Description: Interacts with the 'Glassdoor' API
<https://www.glassdoor.com/developer/index.htm>. Allows the user to
search job statistics, employer statistics, and job progression,
where 'Glassdoor' provides a breakdown of other jobs a person did
after their current one.
Author: John Muschelli [aut, cre]
Maintainer: John Muschelli <muschellij2@gmail.com>
Diff between glassdoor versions 0.8.1 dated 2018-11-21 and 0.9.0 dated 2025-04-01
glassdoor-0.8.1/glassdoor/R/glassdoor_job_prog.R |only glassdoor-0.8.1/glassdoor/man/gd_job_prog.Rd |only glassdoor-0.9.0/glassdoor/DESCRIPTION | 11 glassdoor-0.9.0/glassdoor/MD5 | 34 - glassdoor-0.9.0/glassdoor/NAMESPACE | 1 glassdoor-0.9.0/glassdoor/NEWS.md | 5 glassdoor-0.9.0/glassdoor/R/gdoor.R | 2 glassdoor-0.9.0/glassdoor/R/results.R | 2 glassdoor-0.9.0/glassdoor/README.md | 24 - glassdoor-0.9.0/glassdoor/build/vignette.rds |binary glassdoor-0.9.0/glassdoor/inst/doc/running-glassdoor.R | 22 glassdoor-0.9.0/glassdoor/inst/doc/running-glassdoor.Rmd | 20 glassdoor-0.9.0/glassdoor/inst/doc/running-glassdoor.html | 322 +++++++------- glassdoor-0.9.0/glassdoor/man/gd_api.Rd | 18 glassdoor-0.9.0/glassdoor/man/gd_company.Rd | 26 - glassdoor-0.9.0/glassdoor/man/gd_job_stats.Rd | 26 - glassdoor-0.9.0/glassdoor/man/gd_review.Rd | 3 glassdoor-0.9.0/glassdoor/man/results.Rd | 2 glassdoor-0.9.0/glassdoor/vignettes/running-glassdoor.Rmd | 20 19 files changed, 284 insertions(+), 254 deletions(-)
Title: General Modules for 'teal' Applications
Description: Prebuilt 'shiny' modules containing tools for viewing data,
visualizing data, understanding missing and outlier values within your
data and performing simple data analysis. This extends 'teal'
framework that supports reproducible research and analysis.
Author: Dawid Kaledkowski [aut, cre],
Pawel Rucki [aut],
Mahmoud Hallal [aut],
Ondrej Slama [ctb],
Maciej Nasinski [aut],
Konrad Pagacz [aut],
Nikolas Burkoff [aut],
F. Hoffmann-La Roche AG [cph, fnd]
Maintainer: Dawid Kaledkowski <dawid.kaledkowski@roche.com>
Diff between teal.modules.general versions 0.4.0 dated 2025-02-28 and 0.4.1 dated 2025-04-01
DESCRIPTION | 8 ++++---- MD5 | 22 +++++++++++----------- NEWS.md | 5 +++++ R/tm_a_pca.R | 6 ++++-- R/tm_a_regression.R | 7 +++---- R/tm_g_association.R | 7 +++---- R/tm_g_bivariate.R | 7 +++---- R/tm_g_distribution.R | 7 +++---- R/tm_g_response.R | 7 +++---- R/tm_g_scatterplot.R | 6 ++++-- R/tm_t_crosstable.R | 6 ++++-- build/vignette.rds |binary 12 files changed, 47 insertions(+), 41 deletions(-)
More information about teal.modules.general at CRAN
Permanent link
Title: Spatial and Spatiotemporal SPDE-Based GLMMs with 'TMB'
Description: Implements spatial and spatiotemporal GLMMs (Generalized Linear
Mixed Effect Models) using 'TMB', 'fmesher', and the SPDE (Stochastic Partial
Differential Equation) Gaussian Markov random field approximation to
Gaussian random fields. One common application is for spatially explicit
species distribution models (SDMs).
See Anderson et al. (2024) <doi:10.1101/2022.03.24.485545>.
Author: Sean C. Anderson [aut, cre] ,
Eric J. Ward [aut] ,
Philina A. English [aut] ,
Lewis A. K. Barnett [aut] ,
James T. Thorson [aut, cph] ,
Joe Watson [ctb] ,
Julia Indivero [ctb] ,
Jillian C. Dunic [ctb] ,
Cole C. Monnahan [ctb, cph] ,
Mollie Brooks [ct [...truncated...]
Maintainer: Sean C. Anderson <sean@seananderson.ca>
Diff between sdmTMB versions 0.6.0 dated 2024-05-29 and 0.7.0 dated 2025-04-01
sdmTMB-0.6.0/sdmTMB/man/figures/logo-sdmTMB.png |only sdmTMB-0.7.0/sdmTMB/DESCRIPTION | 20 sdmTMB-0.7.0/sdmTMB/MD5 | 126 + sdmTMB-0.7.0/sdmTMB/NAMESPACE | 8 sdmTMB-0.7.0/sdmTMB/NEWS.md | 109 + sdmTMB-0.7.0/sdmTMB/R/caic.R |only sdmTMB-0.7.0/sdmTMB/R/check.R | 5 sdmTMB-0.7.0/sdmTMB/R/cross-val.R | 40 sdmTMB-0.7.0/sdmTMB/R/dharma.R | 2 sdmTMB-0.7.0/sdmTMB/R/families.R | 26 sdmTMB-0.7.0/sdmTMB/R/fit.R | 690 +++++----- sdmTMB-0.7.0/sdmTMB/R/index.R | 234 ++- sdmTMB-0.7.0/sdmTMB/R/mesh.R | 39 sdmTMB-0.7.0/sdmTMB/R/methods.R | 46 sdmTMB-0.7.0/sdmTMB/R/parsing.R |only sdmTMB-0.7.0/sdmTMB/R/plot.R | 1 sdmTMB-0.7.0/sdmTMB/R/predict.R | 119 + sdmTMB-0.7.0/sdmTMB/R/print.R | 106 + sdmTMB-0.7.0/sdmTMB/R/priors.R | 53 sdmTMB-0.7.0/sdmTMB/R/project.R |only sdmTMB-0.7.0/sdmTMB/R/smoothers.R | 9 sdmTMB-0.7.0/sdmTMB/R/tidy.R | 284 +++- sdmTMB-0.7.0/sdmTMB/R/tmb-sim.R | 117 + sdmTMB-0.7.0/sdmTMB/R/utils.R | 9 sdmTMB-0.7.0/sdmTMB/build/partial.rdb |binary sdmTMB-0.7.0/sdmTMB/build/vignette.rds |binary sdmTMB-0.7.0/sdmTMB/inst/WORDLIST | 32 sdmTMB-0.7.0/sdmTMB/inst/doc/model-description.Rmd | 4 sdmTMB-0.7.0/sdmTMB/inst/doc/model-description.html | 11 sdmTMB-0.7.0/sdmTMB/man/cAIC.Rd |only sdmTMB-0.7.0/sdmTMB/man/coef.sdmTMB.Rd |only sdmTMB-0.7.0/sdmTMB/man/dharma_residuals.Rd | 2 sdmTMB-0.7.0/sdmTMB/man/figures/logo.png |only sdmTMB-0.7.0/sdmTMB/man/get_index.Rd | 103 + sdmTMB-0.7.0/sdmTMB/man/make_mesh.Rd | 6 sdmTMB-0.7.0/sdmTMB/man/plot_anisotropy.Rd | 1 sdmTMB-0.7.0/sdmTMB/man/predict.sdmTMB.Rd | 2 sdmTMB-0.7.0/sdmTMB/man/priors.Rd | 32 sdmTMB-0.7.0/sdmTMB/man/project.Rd |only sdmTMB-0.7.0/sdmTMB/man/sdmTMB.Rd | 17 sdmTMB-0.7.0/sdmTMB/man/sdmTMB_cv.Rd | 2 sdmTMB-0.7.0/sdmTMB/man/sdmTMBcontrol.Rd | 4 sdmTMB-0.7.0/sdmTMB/man/simulate.sdmTMB.Rd | 19 sdmTMB-0.7.0/sdmTMB/man/tidy.sdmTMB.Rd | 15 sdmTMB-0.7.0/sdmTMB/src/sdmTMB.cpp | 314 +++- sdmTMB-0.7.0/sdmTMB/tests/testthat/Rplots.pdf |binary sdmTMB-0.7.0/sdmTMB/tests/testthat/test-1-fit-basic.R | 2 sdmTMB-0.7.0/sdmTMB/tests/testthat/test-1-visreg.R | 2 sdmTMB-0.7.0/sdmTMB/tests/testthat/test-4-index-calculation.R | 29 sdmTMB-0.7.0/sdmTMB/tests/testthat/test-6-tmb-simulation.R | 66 sdmTMB-0.7.0/sdmTMB/tests/testthat/test-8-delta2.R | 27 sdmTMB-0.7.0/sdmTMB/tests/testthat/test-cAIC.R |only sdmTMB-0.7.0/sdmTMB/tests/testthat/test-cross-validation.R | 1 sdmTMB-0.7.0/sdmTMB/tests/testthat/test-index.R | 94 + sdmTMB-0.7.0/sdmTMB/tests/testthat/test-mesh.R |only sdmTMB-0.7.0/sdmTMB/tests/testthat/test-methods.R | 14 sdmTMB-0.7.0/sdmTMB/tests/testthat/test-offset.R | 40 sdmTMB-0.7.0/sdmTMB/tests/testthat/test-poisson-link.R |only sdmTMB-0.7.0/sdmTMB/tests/testthat/test-priors.R | 162 +- sdmTMB-0.7.0/sdmTMB/tests/testthat/test-projection.R |only sdmTMB-0.7.0/sdmTMB/tests/testthat/test-random-effects.R |only sdmTMB-0.7.0/sdmTMB/tests/testthat/test-random-intercepts.R | 93 - sdmTMB-0.7.0/sdmTMB/tests/testthat/test-reml.R | 18 sdmTMB-0.7.0/sdmTMB/tests/testthat/test-smooths.R | 20 sdmTMB-0.7.0/sdmTMB/tests/testthat/test-threshold-models.R | 3 sdmTMB-0.7.0/sdmTMB/tests/testthat/test-tidy.R | 69 + sdmTMB-0.7.0/sdmTMB/tests/testthat/test-time-varying.R | 73 + sdmTMB-0.7.0/sdmTMB/tests/testthat/test-tinyVAST.R | 259 +-- sdmTMB-0.7.0/sdmTMB/tests/testthat/test-tmb-simulation.R | 25 sdmTMB-0.7.0/sdmTMB/tests/testthat/test-truncated-dists.R |only sdmTMB-0.7.0/sdmTMB/vignettes/model-description.Rmd | 4 71 files changed, 2617 insertions(+), 991 deletions(-)
Title: Client for the YouTube API
Description: Get comments posted on YouTube videos, information on how
many times a video has been liked, search for videos with particular
content, and much more. You can also scrape captions from a few
videos. To learn more about the YouTube API, see
<https://developers.google.com/youtube/v3/>.
Author: Gaurav Sood [aut, cre],
Kate Lyons [ctb],
John Muschelli [ctb]
Maintainer: Gaurav Sood <gsood07@gmail.com>
Diff between tuber versions 0.9.9 dated 2020-06-11 and 1.0.1 dated 2025-04-01
tuber-0.9.9/tuber/tests/testthat/test-pkg-style.R |only tuber-0.9.9/tuber/tests/testthat/token_file.rds |only tuber-0.9.9/tuber/vignettes/tuber-ex.md |only tuber-1.0.1/tuber/DESCRIPTION | 38 tuber-1.0.1/tuber/LICENSE | 2 tuber-1.0.1/tuber/MD5 | 217 + tuber-1.0.1/tuber/NAMESPACE | 148 - tuber-1.0.1/tuber/NEWS.md | 243 +- tuber-1.0.1/tuber/R/add_video_to_playlist.R |only tuber-1.0.1/tuber/R/change_playlist_title.R |only tuber-1.0.1/tuber/R/create_playlist.R |only tuber-1.0.1/tuber/R/delete_captions.R | 58 tuber-1.0.1/tuber/R/delete_channel_sections.R | 60 tuber-1.0.1/tuber/R/delete_comments.R | 58 tuber-1.0.1/tuber/R/delete_playlist_items.R | 58 tuber-1.0.1/tuber/R/delete_playlists.R | 58 tuber-1.0.1/tuber/R/delete_videos.R | 57 tuber-1.0.1/tuber/R/get_all_channel_video_stats.R | 143 - tuber-1.0.1/tuber/R/get_all_comments.R | 183 - tuber-1.0.1/tuber/R/get_captions.R | 84 tuber-1.0.1/tuber/R/get_channel_stats.R | 163 - tuber-1.0.1/tuber/R/get_comment_threads.R | 234 +- tuber-1.0.1/tuber/R/get_comments.R | 180 - tuber-1.0.1/tuber/R/get_playlist_item_ids.R |only tuber-1.0.1/tuber/R/get_playlist_item_videoids.R |only tuber-1.0.1/tuber/R/get_playlist_items.R | 186 - tuber-1.0.1/tuber/R/get_playlists.R | 151 - tuber-1.0.1/tuber/R/get_related_videos.R | 137 - tuber-1.0.1/tuber/R/get_stats.R | 77 tuber-1.0.1/tuber/R/get_subscriptions.R | 120 - tuber-1.0.1/tuber/R/get_video_details.R | 176 + tuber-1.0.1/tuber/R/list_abuse_report_reasons.R | 115 - tuber-1.0.1/tuber/R/list_caption_tracks.R | 107 tuber-1.0.1/tuber/R/list_captions.R | 82 tuber-1.0.1/tuber/R/list_channel_activities.R | 201 - tuber-1.0.1/tuber/R/list_channel_resources.R | 155 - tuber-1.0.1/tuber/R/list_channel_sections.R | 85 tuber-1.0.1/tuber/R/list_channel_videos.R | 88 tuber-1.0.1/tuber/R/list_guidecats.R | 135 - tuber-1.0.1/tuber/R/list_langs.R | 78 tuber-1.0.1/tuber/R/list_my_videos.R | 34 tuber-1.0.1/tuber/R/list_regions.R | 81 tuber-1.0.1/tuber/R/list_videocats.R | 132 - tuber-1.0.1/tuber/R/list_videos.R | 94 tuber-1.0.1/tuber/R/read_sbv.R | 78 tuber-1.0.1/tuber/R/tuber.R | 399 ++- tuber-1.0.1/tuber/R/update_video_metadata.R |only tuber-1.0.1/tuber/R/upload_caption.R | 170 - tuber-1.0.1/tuber/R/upload_video.R | 257 +- tuber-1.0.1/tuber/R/utils-pipe.R |only tuber-1.0.1/tuber/R/yt_oauth.R | 152 - tuber-1.0.1/tuber/R/yt_search.R | 457 ++-- tuber-1.0.1/tuber/R/yt_topic_search.R | 78 tuber-1.0.1/tuber/R/zzz.R |only tuber-1.0.1/tuber/README.md | 169 - tuber-1.0.1/tuber/build/vignette.rds |binary tuber-1.0.1/tuber/inst/CITATION | 31 tuber-1.0.1/tuber/inst/doc/tuber-ex.R | 139 - tuber-1.0.1/tuber/inst/doc/tuber-ex.Rmd | 523 ++-- tuber-1.0.1/tuber/inst/doc/tuber-ex.html | 1087 +++++----- tuber-1.0.1/tuber/man/add_video_to_playlist.Rd |only tuber-1.0.1/tuber/man/change_playlist_title.Rd |only tuber-1.0.1/tuber/man/create_playlist.Rd |only tuber-1.0.1/tuber/man/delete_captions.Rd | 54 tuber-1.0.1/tuber/man/delete_channel_sections.Rd | 56 tuber-1.0.1/tuber/man/delete_comments.Rd | 54 tuber-1.0.1/tuber/man/delete_playlist_items.Rd | 54 tuber-1.0.1/tuber/man/delete_playlists.Rd | 54 tuber-1.0.1/tuber/man/delete_videos.Rd | 54 tuber-1.0.1/tuber/man/get_all_channel_video_stats.Rd | 74 tuber-1.0.1/tuber/man/get_all_comments.Rd | 68 tuber-1.0.1/tuber/man/get_captions.Rd | 76 tuber-1.0.1/tuber/man/get_channel_stats.Rd | 79 tuber-1.0.1/tuber/man/get_comment_threads.Rd | 137 - tuber-1.0.1/tuber/man/get_comments.Rd | 138 - tuber-1.0.1/tuber/man/get_playlist_item_ids.Rd |only tuber-1.0.1/tuber/man/get_playlist_item_videoids.Rd |only tuber-1.0.1/tuber/man/get_playlist_items.Rd | 119 - tuber-1.0.1/tuber/man/get_playlists.Rd | 119 - tuber-1.0.1/tuber/man/get_related_videos.Rd | 89 tuber-1.0.1/tuber/man/get_stats.Rd | 61 tuber-1.0.1/tuber/man/get_subscriptions.Rd | 112 - tuber-1.0.1/tuber/man/get_video_details.Rd | 94 tuber-1.0.1/tuber/man/list_abuse_report_reasons.Rd | 79 tuber-1.0.1/tuber/man/list_caption_tracks.Rd | 103 tuber-1.0.1/tuber/man/list_captions.Rd | 58 tuber-1.0.1/tuber/man/list_channel_activities.Rd | 143 - tuber-1.0.1/tuber/man/list_channel_resources.Rd | 121 - tuber-1.0.1/tuber/man/list_channel_sections.Rd | 81 tuber-1.0.1/tuber/man/list_channel_videos.Rd | 96 tuber-1.0.1/tuber/man/list_guidecats.Rd | 75 tuber-1.0.1/tuber/man/list_langs.Rd | 62 tuber-1.0.1/tuber/man/list_my_videos.Rd | 48 tuber-1.0.1/tuber/man/list_regions.Rd | 63 tuber-1.0.1/tuber/man/list_videocats.Rd | 71 tuber-1.0.1/tuber/man/list_videos.Rd | 108 tuber-1.0.1/tuber/man/pipe.Rd |only tuber-1.0.1/tuber/man/read_sbv.Rd | 62 tuber-1.0.1/tuber/man/tuber-package.Rd |only tuber-1.0.1/tuber/man/tuber.Rd | 19 tuber-1.0.1/tuber/man/tuber_DELETE.Rd | 42 tuber-1.0.1/tuber/man/tuber_GET.Rd | 44 tuber-1.0.1/tuber/man/tuber_POST.Rd | 46 tuber-1.0.1/tuber/man/tuber_POST_json.Rd |only tuber-1.0.1/tuber/man/tuber_check.Rd | 34 tuber-1.0.1/tuber/man/update_video_metadata.Rd |only tuber-1.0.1/tuber/man/upload_caption.Rd | 110 - tuber-1.0.1/tuber/man/upload_video.Rd | 120 - tuber-1.0.1/tuber/man/yt_key.Rd |only tuber-1.0.1/tuber/man/yt_oauth.Rd | 104 tuber-1.0.1/tuber/man/yt_search.Rd | 264 +- tuber-1.0.1/tuber/man/yt_token.Rd | 40 tuber-1.0.1/tuber/man/yt_topic_search.Rd | 58 tuber-1.0.1/tuber/tests/testthat.R | 8 tuber-1.0.1/tuber/tests/testthat/test-captions.R | 26 tuber-1.0.1/tuber/tests/testthat/test-get-details.R | 39 tuber-1.0.1/tuber/tests/testthat/test-get-related-videos.R | 24 tuber-1.0.1/tuber/tests/testthat/test-list-channel-activities.R | 26 tuber-1.0.1/tuber/tests/testthat/test-list-channel-sections.R | 52 tuber-1.0.1/tuber/vignettes/tuber-ex.Rmd | 523 ++-- 120 files changed, 6399 insertions(+), 5600 deletions(-)
Title: Grammar of Graphics for Linear Model Diagnostic Plots
Description: Allows for easy creation of diagnostic plots for a variety of model objects using the Grammar of Graphics.
Provides functionality for both individual diagnostic plots and an array of four standard diagnostic plots.
Author: Grayson White [aut, cre]
Maintainer: Grayson White <graysonwhite13@gmail.com>
Diff between gglm versions 1.0.3 dated 2024-01-16 and 1.0.4 dated 2025-04-01
DESCRIPTION | 14 ++++++++------ MD5 | 2 +- 2 files changed, 9 insertions(+), 7 deletions(-)
Title: Converting 'LaTeX' 'R Journal' Articles into 'RJ-web-articles'
Description: Articles in the 'R Journal' were first authored in 'LaTeX', which performs
admirably for 'PDF' files but is less than ideal for modern online interfaces.
The 'texor' package does all the transitional chores and conversions necessary
to move to the online versions.
Author: Abhishek Ulayil [aut, cre, cph]
,
Heather Turner [ctb] ,
Christophe Dervieux [ctb] ,
Mitchell O'Hara-Wild [ctb] ,
Dianne Cook [ctb] ,
Yinxiang Huang [ctb]
Maintainer: Abhishek Ulayil <perricoq@outlook.com>
Diff between texor versions 1.5.3 dated 2024-12-13 and 1.5.6 dated 2025-04-01
DESCRIPTION | 6 ++--- LICENSE | 2 - MD5 | 26 +++++++++++----------- NEWS.md | 9 +++++++ R/article-tools.R | 2 + R/automation-tools.R | 10 +++++--- R/table-tools.R | 33 +++++++++++++++++++++++++++- build/vignette.rds |binary inst/bookdown_ref.lua | 28 +++++++++++++++++++----- inst/doc/environment-handling.html | 18 +++++++-------- inst/fig_code_chunk.lua | 39 +++++++++++++++++++++++++++++++-- inst/table_caption.lua | 43 ++++++++++++++++++++++++++++++++----- inst/table_code_chunk.lua | 8 ++++-- man/latex_to_web.Rd | 8 +++--- 14 files changed, 182 insertions(+), 50 deletions(-)
Title: XML Generation from Tables
Description: Converting structured data from tables into XML format using
predefined templates ensures consistency and flexibility, making it
ideal for data exchange, reporting, and automated workflows.
Author: Jose Samos [aut, cre] ,
Universidad de Granada [cph]
Maintainer: Jose Samos <jsamos@ugr.es>
Diff between tab2xml versions 1.0.0 dated 2025-02-21 and 1.1.0 dated 2025-04-01
DESCRIPTION | 6 - LICENSE | 4 MD5 | 37 ++++--- NAMESPACE | 7 - NEWS.md | 14 +- R/check.R |only R/keys.R |only R/new.R | 87 +++++++++++------ R/sheet2xml.R | 10 +- R/utils.R | 39 ++++++++ README.md | 208 +++++++++++++++++++++++------------------- inst/doc/tab2xml.R | 10 +- inst/doc/tab2xml.Rmd | 36 ++++++- inst/doc/tab2xml.html | 213 +++++++++++++++++++++++++------------------- man/check_tab.Rd |only man/is_cell_empty.Rd |only man/remove_empty_nodes.Rd |only man/sheet2xml.Rd | 78 ++++++++-------- man/validate_fk.Rd |only man/validate_pk.Rd |only tests/testthat/test-check.R |only tests/testthat/test-keys.R |only tests/testthat/test-utils.R | 45 +++++++++ vignettes/tab2xml.Rmd | 36 ++++++- 24 files changed, 542 insertions(+), 288 deletions(-)
Title: Create Custom 'Rstudio' Keyboard Shortcuts
Description: Create custom keyboard shortcuts to examine code selected in the 'Rstudio' editor.
F3 can for example yield 'str(selection)' and F7 open the source
code of CRAN and base package functions on 'github'.
Author: Berry Boessenkool [aut, cre]
Maintainer: Berry Boessenkool <berry-b@gmx.de>
Diff between rskey versions 0.4.4 dated 2020-06-05 and 0.4.19 dated 2025-04-01
DESCRIPTION | 12 +- MD5 | 28 +++--- NAMESPACE | 7 + R/addins.R | 32 ++++++- R/href.R |only R/selectobject.R | 2 R/setKeyboardBindings.R | 184 +++++++++++++++++++++------------------------ R/umlaut2ascii.R |only README.md | 15 ++- inst/keyboardRlabels.ods |binary inst/rstudio/addins.dcf | 26 ++++++ man/addins.Rd | 14 +++ man/bdoc.Rd | 40 ++++----- man/href.Rd |only man/selectobject.Rd | 2 man/setKeyboardBindings.Rd | 12 ++ man/umlaut2ascii.Rd |only 17 files changed, 226 insertions(+), 148 deletions(-)
Title: Human 'Connectome' Project Interface
Description: Downloads and reads data from Human 'Connectome' Project
<https://db.humanconnectome.org> using Amazon Web Services ('AWS')
'S3' buckets.
Author: John Muschelli [aut, cre],
Adi Gherman [ctb]
Maintainer: John Muschelli <muschellij2@gmail.com>
Diff between neurohcp versions 0.9.0 dated 2020-10-14 and 0.11.0 dated 2025-04-01
DESCRIPTION | 12 MD5 | 32 NEWS.md | 9 R/bucketlist.R | 14 R/download_hcp_file.R | 13 R/get_hcp_file.R | 4 R/hcp_list_files.R | 87 - R/make_aws_call.R | 8 R/parse_list_files.R | 11 README.md | 4102 +++++++++++++++++++++++++++++++++++++++++++++++++- build/vignette.rds |binary inst/doc/hcp.R | 32 inst/doc/hcp.html | 303 +-- man/bucketlist.Rd | 2 man/get_hcp_file.Rd | 4 man/hcp_list_files.Rd | 28 man/make_aws_call.Rd | 8 17 files changed, 4441 insertions(+), 228 deletions(-)
Title: Simultaneous Truth and Performance Level Estimation
Description: An implementation of Simultaneous Truth and
Performance Level Estimation (STAPLE) <doi:10.1109/TMI.2004.828354>. This
method is used when there are multiple raters for an object, typically an
image, and this method fuses these ratings into one rating. It uses an
expectation-maximization method to estimate this rating and the individual
specificity/sensitivity for each rater.
Author: John Muschelli [aut, cre]
Maintainer: John Muschelli <muschellij2@gmail.com>
Diff between stapler versions 0.7.1 dated 2020-01-09 and 0.8.0 dated 2025-04-01
DESCRIPTION | 9 - MD5 | 30 ++-- NEWS.md | 8 + R/staple.R | 59 ++++++++ R/staple_binimg.R | 9 + R/staple_binmat.R | 3 R/staple_multi_mat.R | 55 +++++++- README.md | 11 - build/vignette.rds |binary inst/doc/staple_example.R | 8 - inst/doc/staple_example.html | 260 ++++++++++++++++++++++----------------- man/staple.Rd | 59 ++++++++ man/staple_bin_img.Rd | 8 + man/staple_multi_mat.Rd | 6 tests/testthat/test-binmat-bad.R | 6 tests/testthat/test-binmat.R | 4 16 files changed, 383 insertions(+), 152 deletions(-)
Title: Multi-Model Inference
Description: Tools for model selection and model averaging with support for a
wide range of statistical models. Automated model selection through
subsets of the maximum model, with optional constraints for model
inclusion. Averaging of model parameters and predictions based on
model weights derived from information criteria (AICc and alike)
or custom model weighting schemes.
Author: Kamil Barton [aut, cre]
Maintainer: Kamil Barton <kamil.barton@go2.pl>
Diff between MuMIn versions 1.48.4 dated 2024-06-22 and 1.48.11 dated 2025-04-01
DESCRIPTION | 18 ++--- MD5 | 130 +++++++++++++++++++++------------------- NAMESPACE | 15 +++- NEWS | 39 ++++++++++-- R/class-fitdistr.R |only R/class-glmmTMB.R | 3 R/class-unmarkedFit.R | 53 +++++++--------- R/coefTable.R | 2 R/dredge.R | 41 ++++++------ R/frmsplit.R |only R/getAllTerms.R | 4 - R/getspecs.R |only R/methods-averaging.R | 2 R/model.names.R | 2 R/model.sel.R | 15 ++-- R/model.selection.R | 7 -- R/modelspecs.R |only R/modify.model.selection.R | 3 R/pdredge.R | 2 R/plot.model.selection.R | 19 ----- R/predict.R | 2 R/r.squaredLR.R | 39 ++++++++---- R/rbind.model.selection.R | 8 ++ R/substitution.R | 9 +- R/umf_specs.R | 34 +++++----- R/unfckme.R | 28 +++++--- R/utils-misc.R | 89 ++++++++++++++++++++------- R/utils-models.R | 4 - data/Beetle.rda |binary data/Cement.rda |binary data/GPA.rda |binary demo/pdredge.pcount.R | 5 - man/AICc.Rd | 18 ++--- man/BGweights.Rd | 20 +++--- man/ICs.Rd | 21 +++--- man/MuMIn-package.Rd | 30 ++++----- man/QAIC.Rd | 12 +-- man/QIC.Rd | 25 ++++--- man/Weights.Rd | 56 +++++++++++------ man/arm.glm.Rd | 26 ++++---- man/bootWeights.Rd | 10 +-- man/coefplot.Rd | 8 +- man/cos2weights.Rd | 6 - man/dredge.Rd | 134 +++++++++++++++++++++--------------------- man/exprApply.Rd | 10 +-- man/get.models.Rd | 12 +-- man/jackknifeWeights.Rd | 16 ++--- man/macros/macros.Rd | 24 ++++++- man/manip-formula.Rd | 6 - man/merge.model.selection.Rd | 6 - man/model-utils.Rd | 20 ++++-- man/model.avg.Rd | 28 ++++---- man/model.sel.Rd | 16 ++--- man/model.selection.object.Rd | 12 ++- man/nested.Rd | 6 - man/par.avg.Rd | 2 man/pdredge.Rd | 4 - man/plot.model.selection.Rd | 28 ++++---- man/predict.averaging.Rd | 12 +-- man/r.squaredGLMM.Rd | 25 ++++--- man/r.squaredLR.Rd | 4 - man/stackingWeights.Rd | 6 - man/std.coef.Rd | 6 - man/stdize.Rd | 16 ++--- man/subset.model.selection.Rd | 6 - man/sumofweights.Rd | 4 - man/supported-classes.Rd | 28 +++++--- man/updateable.Rd | 76 ++++++++++++++--------- 68 files changed, 732 insertions(+), 580 deletions(-)
Title: Survival Trees to Fit Left-Truncated and Right-Censored and
Interval-Censored Survival Data
Description: Recursive partition algorithms designed for fitting survival trees with left-truncated and right-censored (LTRC) data, as well as interval-censored data.
The LTRC trees can also be used to fit survival trees with time-varying covariates.
Author: Wei Fu [aut],
Jeffrey Simonoff [aut],
Wenbo Jing [aut, cre]
Maintainer: Wenbo Jing <wj2093@stern.nyu.edu>
Diff between LTRCtrees versions 1.1.1 dated 2021-01-13 and 1.1.2 dated 2025-04-01
DESCRIPTION | 33 - MD5 | 12 R/LTRCART.R | 436 +++++++-------- build/vignette.rds |binary inst/doc/LTRCtrees.R | 278 ++++----- inst/doc/LTRCtrees.html | 1350 ++++++++++++++++++++++++++---------------------- man/LTRCART.Rd | 258 ++++----- 7 files changed, 1255 insertions(+), 1112 deletions(-)
More information about LogisticEnsembles at CRAN
Permanent link
Title: 'Leanpub' API Interface
Description: Provides access to the 'Leanpub' API
<https://leanpub.com/help/api> for gathering information about
publications and submissions to the 'Leanpub' platform.
Author: John Muschelli [aut, cre]
Maintainer: John Muschelli <muschellij2@gmail.com>
Diff between leanpubr versions 0.3.1 dated 2018-08-16 and 0.4.0 dated 2025-04-01
DESCRIPTION | 18 +- MD5 | 55 +++--- NAMESPACE | 4 NEWS.md | 8 R/aaa_utils.R | 16 + R/lp_book.R | 2 R/lp_coupons.R | 2 R/lp_download.R | 6 R/lp_get_wrapper.R | 35 ++-- R/lp_job_status.R | 2 R/lp_preview.R | 4 R/lp_publish.R | 5 R/lp_quiz_responses.R |only R/lp_sales.R | 49 +++++ README.md |only build/vignette.rds |binary inst/doc/getting_data_leanpub.R | 7 inst/doc/getting_data_leanpub.Rmd | 6 inst/doc/getting_data_leanpub.html | 312 +++++++++++++++++++------------------ man/lp_book_info.Rd | 7 man/lp_coupons.Rd | 4 man/lp_download.Rd | 16 + man/lp_get_wrapper.Rd | 26 ++- man/lp_job_status.Rd | 7 man/lp_links.Rd | 2 man/lp_preview.Rd | 6 man/lp_publish.Rd | 4 man/lp_quiz_responses.Rd |only man/lp_sales.Rd | 32 +++ vignettes/getting_data_leanpub.Rmd | 6 30 files changed, 387 insertions(+), 254 deletions(-)
More information about ForecastingEnsembles at CRAN
Permanent link
Title: File-Backed Array for Out-of-Memory Computation
Description: Stores large arrays in files to avoid occupying large
memories. Implemented with super fast gigabyte-level multi-threaded
reading/writing via 'OpenMP'. Supports multiple non-character data
types (double, float, complex, integer, logical, and raw).
Author: Zhengjia Wang [aut, cre, cph]
Maintainer: Zhengjia Wang <dipterix.wang@gmail.com>
Diff between filearray versions 0.1.9 dated 2024-11-08 and 0.2.0 dated 2025-04-01
DESCRIPTION | 6 MD5 | 22 +- NEWS.md | 4 R/load.R | 15 - build/vignette.rds |binary inst/doc/performance.R | 428 +++++++++++++++++++-------------------- inst/doc/performance.Rmd | 6 inst/doc/performance.html | 22 +- man/filearray.Rd | 6 tests/testthat/test-method_add.R | 8 tests/testthat/test-method_sub.R | 8 vignettes/performance.Rmd | 6 12 files changed, 276 insertions(+), 255 deletions(-)
More information about ClassificationEnsembles at CRAN
Permanent link
Title: Forward Selection using Concordance/C-Index
Description: Performs forward model selection, using the C-index/concordance
in survival analysis models.
Author: John Muschelli [aut, cre] ,
Andrew Leroux [aut]
Maintainer: John Muschelli <muschellij2@gmail.com>
Diff between cforward versions 0.1.0 dated 2021-03-29 and 0.2.0 dated 2025-04-01
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- NEWS.md | 4 ++++ R/cforward.R | 16 ++++++++-------- README.md | 2 ++ man/cforward.Rd | 8 ++++---- man/estimate_concordance.Rd | 8 ++++---- man/figures/README-pressure-1.png |binary 8 files changed, 33 insertions(+), 27 deletions(-)
Title: A Toolbox for Writing Pretty Papers and Reports
Description: A toolbox for writing 'knitr', 'Sweave' or other 'LaTeX'- or 'markdown'-based
reports and to prettify the output of various estimated models.
Author: Benjamin Hofner [aut, cre] ,
Romain Francois [ctb],
Kurt Hornik [ctb],
Martin Maechler [ctb],
David Dahl [ctb]
Maintainer: Benjamin Hofner <benjamin.hofner@pei.de>
Diff between papeR versions 1.0-5 dated 2021-03-22 and 1.0-6 dated 2025-04-01
ChangeLog | 32 +++ DESCRIPTION | 22 +- MD5 | 34 +-- NAMESPACE | 2 R/helpers.R | 4 R/summarize.R | 38 +-- README.md | 1 build/vignette.rds |binary inst/CITATION | 6 inst/NEWS.Rd | 19 + inst/doc/papeR_introduction.R | 14 - inst/doc/papeR_introduction.html | 403 ++++++++++++++++++++++++--------------- inst/doc/papeR_with_latex.pdf |binary man/Anova.lme.Rd | 4 man/confint.Rd | 4 man/labels.data.frame.Rd | 4 man/papeR-package.Rd | 4 man/prettify.Rd | 12 - 18 files changed, 387 insertions(+), 216 deletions(-)
More information about NumericEnsembles at CRAN
Permanent link
Title: Example T1 Structural Data from the Multi-Modal MRI
'Reproducibility' Resource
Description: Structural T1 magnetic resonance imaging ('MRI')
data from the 'Kirby21' 'reproducibility' study
<doi:10.1016/j.neuroimage.2010.11.047>.
Author: John Muschelli [aut, cre]
Maintainer: John Muschelli <muschellij2@gmail.com>
Diff between kirby21.t1 versions 1.7.0 dated 2018-08-13 and 1.8.0 dated 2025-04-01
DESCRIPTION | 21 +++++++++++++-------- MD5 | 20 ++++++++++---------- NAMESPACE | 1 + NEWS.md | 4 ++++ R/delete_t1_data.R | 2 +- R/download_t1_data.R | 15 ++++++++++++--- R/get_t1_filenames.R | 9 ++++++++- README.md | 8 +++++--- man/delete_t1_data.Rd | 2 +- man/download_t1_data.Rd | 5 ++++- man/get_t1_filenames.Rd | 5 ++++- 11 files changed, 63 insertions(+), 29 deletions(-)
Title: Example Functional Imaging Data from the Multi-Modal MRI
'Reproducibility' Resource
Description: Functional magnetic resonance imaging ('fMRI')
data from the 'Kirby21' 'reproducibility' study
<doi:10.1016/j.neuroimage.2010.11.047>.
Author: John Muschelli [aut, cre]
Maintainer: John Muschelli <muschellij2@gmail.com>
Diff between kirby21.fmri versions 1.7.0 dated 2018-08-13 and 1.8.0 dated 2025-04-01
DESCRIPTION | 19 ++++++++++++------- MD5 | 18 +++++++++--------- NEWS.md | 4 ++++ R/delete_fmri_data.R | 2 +- R/download_fmri_data.R | 2 +- R/get_fmri_filenames.R | 2 +- README.md | 7 ++++--- man/delete_fmri_data.Rd | 2 +- man/download_fmri_data.Rd | 2 +- man/get_fmri_filenames.Rd | 2 +- 10 files changed, 35 insertions(+), 25 deletions(-)
Title: Generalised Linear Mixed Models in R
Description: Specification, analysis, simulation, and fitting of generalised linear mixed models.
Includes Markov Chain Monte Carlo Maximum likelihood and Laplace approximation model fitting for a range of models,
non-linear fixed effect specifications, a wide range of flexible covariance functions that can be combined arbitrarily,
robust and bias-corrected standard error estimation, power calculation, data simulation, and more.
See <https://samuel-watson.github.io/glmmr-web/> for a detailed manual.
Author: Sam Watson [aut, cre]
Maintainer: Sam Watson <S.I.Watson@bham.ac.uk>
Diff between glmmrBase versions 0.11.2 dated 2024-12-12 and 1.0.0 dated 2025-04-01
glmmrBase-0.11.2/glmmrBase/src/heckman.cpp |only glmmrBase-1.0.0/glmmrBase/DESCRIPTION | 8 glmmrBase-1.0.0/glmmrBase/MD5 | 45 +- glmmrBase-1.0.0/glmmrBase/R/R6Model.R | 42 + glmmrBase-1.0.0/glmmrBase/R/RcppExports.R | 44 +- glmmrBase-1.0.0/glmmrBase/R/extrafunctions.R | 8 glmmrBase-1.0.0/glmmrBase/build/partial.rdb |binary glmmrBase-1.0.0/glmmrBase/inst/cmdstan/mcml.stan | 12 glmmrBase-1.0.0/glmmrBase/inst/include/glmmr/covariance.hpp | 36 + glmmrBase-1.0.0/glmmrBase/inst/include/glmmr/general.h | 6 glmmrBase-1.0.0/glmmrBase/inst/include/glmmr/hsgpcovariance.hpp | 9 glmmrBase-1.0.0/glmmrBase/inst/include/glmmr/linearpredictor.hpp | 3 glmmrBase-1.0.0/glmmrBase/inst/include/glmmr/maths.h | 36 - glmmrBase-1.0.0/glmmrBase/inst/include/glmmr/matrixfield.h | 4 glmmrBase-1.0.0/glmmrBase/inst/include/glmmr/modelmatrix.hpp | 59 +- glmmrBase-1.0.0/glmmrBase/inst/include/glmmr/modelmcmc.hpp | 35 - glmmrBase-1.0.0/glmmrBase/inst/include/glmmr/modeloptim.hpp | 219 ++++++---- glmmrBase-1.0.0/glmmrBase/inst/include/glmmr/nngpcovariance.hpp | 17 glmmrBase-1.0.0/glmmrBase/inst/include/glmmr/optim/lbfgs/Param.h | 12 glmmrBase-1.0.0/glmmrBase/inst/stan/mcml.stan | 12 glmmrBase-1.0.0/glmmrBase/man/Model.Rd | 2 glmmrBase-1.0.0/glmmrBase/src/RcppExports.cpp | 12 glmmrBase-1.0.0/glmmrBase/src/model_module.cpp | 164 +++---- glmmrBase-1.0.0/glmmrBase/src/stanExports_mcml.h | 12 24 files changed, 487 insertions(+), 310 deletions(-)
Title: Google Citation Parser
Description: Scrapes Google Citation pages and creates data frames of
citations over time.
Author: John Muschelli [aut, cre]
Maintainer: John Muschelli <muschellij2@gmail.com>
Diff between gcite versions 0.10.1 dated 2019-03-06 and 0.11.0 dated 2025-04-01
DESCRIPTION | 11 ++----- MD5 | 64 ++++++++++++++++++++++---------------------- NEWS.md | 5 +++ R/author_cloud.R | 2 - R/gcite.R | 2 - R/gcite_author_info.R | 8 ++--- R/gcite_citation_index.R | 2 - R/gcite_citation_page.R | 22 ++++++++++----- R/gcite_cite_over_time.R | 2 - R/gcite_graph.R | 5 ++- R/gcite_main_graph.R | 2 - R/gcite_paper_df.R | 2 - R/gcite_papers.R | 2 - R/gcite_user_info.R | 2 - R/gcite_username.R | 21 ++++++++------ R/gcite_wordcloud_spec.R | 4 +- R/set_cookies_txt.R | 4 +- README.md | 11 ++----- man/author_cloud.Rd | 25 ++++++++++++----- man/gcite.Rd | 16 ++++++++--- man/gcite_author_info.Rd | 22 ++++++++++----- man/gcite_citation_index.Rd | 2 - man/gcite_citation_page.Rd | 19 ++++--------- man/gcite_cite_over_time.Rd | 2 - man/gcite_graph.Rd | 2 - man/gcite_main_graph.Rd | 2 - man/gcite_paper_df.Rd | 5 +-- man/gcite_papers.Rd | 2 - man/gcite_user_info.Rd | 14 +++++++-- man/gcite_username.Rd | 5 +-- man/gcite_wordcloud.Rd | 8 ++++- man/gcite_wordcloud_spec.Rd | 17 ++++++++--- man/set_cookies_txt.Rd | 4 +- 33 files changed, 184 insertions(+), 132 deletions(-)
Title: Display Differences Between Two Files using Codediff Library
Description: An R interface to the 'codediff' JavaScript library (a copy of which is included in the package,
see <https://github.com/danvk/codediff.js> for information).
Allows for visualization of the difference between 2 files, usually text files or R scripts, in a browser.
Author: John Muschelli [aut, cre]
Maintainer: John Muschelli <muschellij2@gmail.com>
Diff between diffr versions 0.1 dated 2017-02-27 and 0.3.0 dated 2025-04-01
DESCRIPTION | 9 ++++----- MD5 | 12 +++++++----- NEWS.md |only R/diffr.R | 4 ++-- inst/htmlwidgets/lib/codediff/codediff.css | 2 +- man/diffr.Rd | 21 +++++++++++++++------ man/diffrOutput.Rd | 4 ++-- man/img |only 8 files changed, 31 insertions(+), 21 deletions(-)
Title: Helper Functions to 'misc3d' and 'rgl' Packages for Brain
Imaging
Description: This includes functions for creating 3D and 4D images using
'WebGL', 'rgl', and 'JavaScript' commands.
This package relies on the X toolkit ('XTK',
<https://github.com/xtk/X#readme>).
Author: John Muschelli [aut, cre]
Maintainer: John Muschelli <muschellij2@gmail.com>
Diff between brainR versions 1.6.0 dated 2019-12-05 and 1.7.0 dated 2025-04-01
DESCRIPTION | 10 ++++------ MD5 | 28 ++++++++++++++-------------- NEWS.md | 4 ++++ R/brainR-package.R | 5 ++--- R/makeScene.R | 4 ++-- R/scene4d.R | 1 + R/write4D.R | 16 ++++++++-------- R/write4D.file.R | 6 +++--- R/writeTrianglesSTL.R | 2 +- README.md | 15 +++++++-------- man/brainR-package.Rd | 2 +- man/makeScene.Rd | 4 ++-- man/write4D.Rd | 6 +++--- man/write4D.file.Rd | 4 ++-- man/writeTrianglesSTL.Rd | 2 +- 15 files changed, 55 insertions(+), 54 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-07-01 0.99.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-01-13 4.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-06-17 1.1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-07-09 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-04-06 1.1.0
2019-03-24 1.0.4
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-01-28 0.1.1
2020-11-18 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-03-04 0.1.1.0
2019-12-15 0.1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-05-17 1.0
2021-03-02 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-06-03 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-06-16 1.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-06-10 4.7.6
2021-05-12 4.7.5
2021-01-28 4.7.4
2020-11-21 4.7.3
2020-09-01 4.7.2
2020-04-13 4.7.1
2020-03-13 4.7.0
2020-03-06 4.6.1
2020-01-15 4.5.0
2018-06-15 4.3.0
2018-02-27 4.2.7
2016-12-13 4.2.6
2016-08-02 4.2.5
2016-07-26 4.2.4
2016-06-21 4.2.2
2016-06-05 4.2.1
2015-08-17 4.1.2
2014-04-22 4.1.1
2014-04-11 4.1
2014-04-01 4.0
2013-04-23 3.2
2012-06-11 3.1.5
2010-11-03 3.1.4
2010-10-28 3.1.3
2010-10-27 3.1.2
2010-09-10 3.1.1
2010-01-14 3.1
2009-12-09 3.0
2008-05-13 2.1
2008-04-27 2.0
2008-02-21 1.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-10-26 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-08-14 2.0.0
2016-03-21 1.0.1
2015-11-25 1.0.0
2015-03-29 0.9.7
2015-03-20 0.9.6
2014-10-06 0.9.5
2014-07-18 0.9.4
2014-04-22 0.9.2
2014-03-06 0.9.1
2014-02-19 0.9
2013-10-13 0.8.0
2013-07-11 0.7
2013-04-19 0.6
2013-02-22 0.5.3
Title: Analyze Experimental High-Throughput (Omics) Data
Description: The efficient treatment and convenient analysis of experimental high-throughput (omics) data gets facilitated through this collection of diverse functions.
Several functions address advanced object-conversions, like manipulating lists of lists or lists of arrays, reorganizing lists to arrays or into separate vectors, merging of multiple entries, etc.
Another set of functions provides speed-optimized calculation of standard deviation (sd), coefficient of variance (CV) or standard error of the mean (SEM)
for data in matrixes or means per line with respect to additional grouping (eg n groups of replicates).
A group of functions facilitate dealing with non-redundant information, by indexing unique, adding counters to redundant or eliminating lines with respect redundancy in a given reference-column, etc.
Help is provided to identify very closely matching numeric values to generate (partial) distance matrixes for very big data in a memory efficient manner or to reduce the complexity of larg [...truncated...]
Author: Wolfgang Raffelsberger [aut, cre]
Maintainer: Wolfgang Raffelsberger <w.raffelsberger@gmail.com>
Diff between wrMisc versions 1.15.2 dated 2024-08-20 and 1.15.3.1 dated 2025-04-01
DESCRIPTION | 6 MD5 | 41 +++-- NAMESPACE | 2 R/checkFilePath.R | 296 +++++++++++++++++++++--------------------- R/matchMatrixLinesToRef.R | 22 +-- R/moderTest2grp.R | 14 - R/nonAmbiguousNum.R | 20 +- R/normalizeThis.R | 33 ++-- R/summarizeCols.R | 1 R/top3mean.R |only R/trimRedundText.R | 1 R/trimmedMean.R | 3 build/vignette.rds |binary inst/doc/wrMiscVignette1.R | 28 +-- inst/doc/wrMiscVignette1.html | 73 ++++------ man/checkFilePath.Rd | 14 - man/dot-doubleExt.Rd |only man/dot-normalize.Rd | 4 man/moderTest2grp.Rd | 14 - man/nonAmbiguousNum.Rd | 14 + man/normalizeThis.Rd | 13 - man/top3mean.Rd |only man/trimmedMean.Rd | 1 23 files changed, 316 insertions(+), 284 deletions(-)
Title: Mutation Models for Pedigree Likelihood Computations
Description: A collection of functions for modelling mutations in
pedigrees with marker data, as used e.g. in likelihood computations
with microsatellite data. Implemented models include equal,
proportional and stepwise models, as well as random models for
experimental work, and custom models allowing the user to apply any
valid mutation matrix. Allele lumping is done following the
lumpability criteria of Kemeny and Snell (1976), ISBN:0387901922.
Author: Magnus Dehli Vigeland [aut, cre]
,
Thore Egeland [ctb]
Maintainer: Magnus Dehli Vigeland <m.d.vigeland@medisin.uio.no>
Diff between pedmut versions 0.7.1 dated 2023-11-04 and 0.8.0 dated 2025-04-01
DESCRIPTION | 8 MD5 | 38 +- NAMESPACE | 2 NEWS.md | 29 + R/adjustRate.R |only R/makeReversible.R |only R/mutRate.R | 24 - R/mutationMatrix.R | 561 ++++++++++++++++++++++++----------- R/mutationModel.R | 14 R/stepwiseReversible.R | 26 + R/utils.R | 31 - README.md | 69 ++-- man/adjustRate.Rd |only man/makeReversible.Rd |only man/mutRate.Rd | 12 man/mutationMatrix.Rd | 60 ++- man/mutationModel.Rd | 4 man/pedmut-package.Rd | 54 +-- man/stepwiseReversible.Rd | 7 tests/testthat/test-mutationMatrix.R | 30 + tests/testthat/test-mutationModel.R | 6 tests/testthat/test-properties.R | 11 22 files changed, 641 insertions(+), 345 deletions(-)
Title: Data Integration with Two-Way Orthogonal Partial Least Squares
Description: Performs the O2PLS data integration method for two datasets, yielding joint and data-specific parts for each dataset.
The algorithm automatically switches to a memory-efficient approach to fit O2PLS to high dimensional data.
It provides a rigorous and a faster alternative cross-validation method to select the number of components,
as well as functions to report proportions of explained variation and to construct plots of the results.
See the software article by el Bouhaddani et al (2018) <doi:10.1186/s12859-018-2371-3>,
and Trygg and Wold (2003) <doi:10.1002/cem.775>.
It also performs Sparse Group (Penalized) O2PLS, see Gu et al (2020) <doi:10.1186/s12859-021-03958-3> and cross-validation for the degree of sparsity.
Author: Said el Bouhaddani [aut, cre],
Zander Gu [aut],
Jeanine Houwing-Duistermaat [aut],
Geurt Jongbloed [aut],
Szymon Kielbasa [aut],
Hae-Won Uh [aut]
Maintainer: Said el Bouhaddani <s.elbouhaddani@umcutrecht.nl>
Diff between OmicsPLS versions 2.0.2 dated 2021-05-19 and 2.1.0 dated 2025-04-01
OmicsPLS-2.0.2/OmicsPLS/man/OmicsPLS.Rd |only OmicsPLS-2.1.0/OmicsPLS/DESCRIPTION | 40 + OmicsPLS-2.1.0/OmicsPLS/MD5 | 42 - OmicsPLS-2.1.0/OmicsPLS/NAMESPACE | 2 OmicsPLS-2.1.0/OmicsPLS/R/Crossval_OmicsPLS.R | 25 OmicsPLS-2.1.0/OmicsPLS/R/OmicsPLS.R | 75 +- OmicsPLS-2.1.0/OmicsPLS/R/OmicsPLS_o2m.R | 32 - OmicsPLS-2.1.0/OmicsPLS/build/partial.rdb |binary OmicsPLS-2.1.0/OmicsPLS/build/vignette.rds |binary OmicsPLS-2.1.0/OmicsPLS/inst/CITATION | 26 OmicsPLS-2.1.0/OmicsPLS/inst/doc/OmicsPLS_vignette.html | 489 ++++++++++++---- OmicsPLS-2.1.0/OmicsPLS/man/OmicsPLS-package.Rd |only OmicsPLS-2.1.0/OmicsPLS/man/adjR2.Rd | 2 OmicsPLS-2.1.0/OmicsPLS/man/crossval_o2m.Rd | 11 OmicsPLS-2.1.0/OmicsPLS/man/crossval_o2m_adjR2.Rd | 5 OmicsPLS-2.1.0/OmicsPLS/man/impute_matrix.Rd | 2 OmicsPLS-2.1.0/OmicsPLS/man/loadings.Rd | 2 OmicsPLS-2.1.0/OmicsPLS/man/loocv.Rd | 5 OmicsPLS-2.1.0/OmicsPLS/man/loocv_combi.Rd | 5 OmicsPLS-2.1.0/OmicsPLS/man/plot.o2m.Rd | 4 OmicsPLS-2.1.0/OmicsPLS/man/scores.Rd | 2 OmicsPLS-2.1.0/OmicsPLS/man/summary.o2m.Rd | 2 OmicsPLS-2.1.0/OmicsPLS/tests/testthat/Rplots.pdf |binary 23 files changed, 538 insertions(+), 233 deletions(-)
Title: Toolkit for Reduced Form and Structural Smooth Transition Vector
Autoregressive Models
Description: Penalized and non-penalized maximum likelihood estimation of smooth
transition vector autoregressive models with various types of transition weight
functions, conditional distributions, and identification methods. Constrained
estimation with various types of constraints is available. Residual based
model diagnostics, forecasting, simulations, and calculation of impulse
response functions, generalized impulse response functions, and generalized
forecast error variance decompositions. See
Heather Anderson, Farshid Vahid (1998) <doi:10.1016/S0304-4076(97)00076-6>,
Helmut Lütkepohl, Aleksei Netšunajev (2017) <doi:10.1016/j.jedc.2017.09.001>,
Markku Lanne, Savi Virolainen (2025) <doi:10.48550/arXiv.2403.14216>,
Savi Virolainen (2025) <doi:10.48550/arXiv.2404.19707>.
Author: Savi Virolainen [aut, cre]
Maintainer: Savi Virolainen <savi.virolainen@helsinki.fi>
Diff between sstvars versions 1.1.4 dated 2025-02-27 and 1.1.5 dated 2025-04-01
DESCRIPTION | 6 +- MD5 | 114 ++++++++++++++++++++--------------------- NEWS.md | 7 ++ R/LSest.R | 22 +++---- R/STVARconstruction.R | 2 R/data.R | 2 R/geneticAlgorithm.R | 14 ++--- R/loglikelihood.R | 12 ++-- R/miscellaneous.R | 6 +- R/parameterReforms.R | 6 +- R/pickParams.R | 18 +++--- inst/doc/sstvars-vignette.Rnw | 114 ++++++++++++++++++++--------------------- inst/doc/sstvars-vignette.pdf |binary man/GAfit.Rd | 16 ++--- man/STVAR.Rd | 14 ++--- man/alt_stvar.Rd | 2 man/change_parametrization.Rd | 10 +-- man/change_regime.Rd | 14 ++--- man/check_constraints.Rd | 2 man/check_params.Rd | 12 ++-- man/estim_LS.Rd | 6 +- man/estim_NLS.Rd | 6 +- man/filter_estimates.Rd | 2 man/fitSSTVAR.Rd | 2 man/fitSTVAR.Rd | 4 - man/fitbsSSTVAR.Rd | 14 ++--- man/get_boldA_eigens_par.Rd | 12 ++-- man/get_omega_eigens_par.Rd | 12 ++-- man/get_regime_autocovs.Rd | 10 +-- man/get_regime_means.Rd | 12 ++-- man/get_residuals.Rd | 12 ++-- man/in_paramspace.Rd | 10 +-- man/iterate_more.Rd | 2 man/loglikelihood.Rd | 12 ++-- man/pick_Am.Rd | 8 +- man/pick_Ami.Rd | 8 +- man/pick_Omegas.Rd | 8 +- man/pick_W.Rd | 10 +-- man/pick_allA.Rd | 8 +- man/pick_distpars.Rd | 8 +- man/pick_lambdas.Rd | 10 +-- man/pick_phi0.Rd | 12 ++-- man/pick_regime.Rd | 14 ++--- man/pick_weightpars.Rd | 8 +- man/random_ind.Rd | 4 - man/reform_constrained_pars.Rd | 10 +-- man/regime_distance.Rd | 6 +- man/reorder_B_columns.Rd | 2 man/smart_ind.Rd | 14 ++--- man/sort_impactmats.Rd | 10 +-- man/sort_regimes.Rd | 10 +-- man/stab_conds_satisfied.Rd | 8 +- man/standard_errors.Rd | 12 ++-- man/swap_B_signs.Rd | 2 man/swap_parametrization.Rd | 2 man/usacpu.Rd | 2 vignettes/refs.bib | 10 +++ vignettes/sstvars-vignette.Rnw | 114 ++++++++++++++++++++--------------------- 58 files changed, 415 insertions(+), 394 deletions(-)
Title: Database Interface and 'MySQL' Driver for R
Description: Legacy 'DBI' interface to 'MySQL' / 'MariaDB' based on old code
ported from S-PLUS. A modern 'MySQL' client written in 'C++' is available
from the 'RMariaDB' package.
Author: Jeroen Ooms [aut, cre] ,
David James [aut],
Saikat DebRoy [aut],
Hadley Wickham [aut],
Jeffrey Horner [aut],
RStudio [cph]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>
Diff between RMySQL versions 0.11.0 dated 2025-02-08 and 0.11.1 dated 2025-04-01
DESCRIPTION | 6 +++--- MD5 | 4 ++-- src/Makevars.in | 6 +++--- 3 files changed, 8 insertions(+), 8 deletions(-)
Title: Implicit Association Test Scores Using Robust Statistics
Description: Compute several variations of the Implicit Association Test (IAT) scores, including the D scores (Greenwald, Nosek, Banaji, 2003, <doi:10.1037/0022-3514.85.2.197>) and the new scores that were developed using robust statistics (Richetin, Costantini, Perugini, and Schonbrodt, 2015, <doi:10.1371/journal.pone.0129601>).
Author: Giulio Costantini [aut, cre]
Maintainer: Giulio Costantini <costantinigiulio@gmail.com>
Diff between IATscores versions 0.2.7 dated 2020-05-09 and 0.2.8 dated 2025-04-01
DESCRIPTION | 11 ++++++----- MD5 | 8 ++++---- NEWS.md | 5 +++-- inst/CITATION | 35 ++++++++++++----------------------- man/Tgraph.Rd | 5 ++++- 5 files changed, 29 insertions(+), 35 deletions(-)
Title: Tools for Distance Metrics
Description: Provides tools for constructing, manipulating and using distance metrics.
Author: Fredrik Savje [aut, cre]
Maintainer: Fredrik Savje <rpackages@fredriksavje.com>
Diff between distances versions 0.1.11 dated 2024-07-31 and 0.1.12 dated 2025-04-01
DESCRIPTION | 10 +++--- MD5 | 20 ++++++------ NEWS.md | 5 +++ R/distances-package.R | 5 +-- man/distances-package.Rd | 13 ++++++++ src/Makevars | 2 - src/libann/Makefile | 2 - src/libann/include/ANN/ANNperf.h | 2 - src/libann/src/ANN.cpp | 6 +-- src/libann/src/kd_dump.cpp | 2 - src/libann/src/perf.cpp | 61 +++++++++++++++++++-------------------- 11 files changed, 73 insertions(+), 55 deletions(-)
Title: Spanish version of orloca package. Modelos de localizacion en
investigacion operativa
Description: Help and demo in Spanish of the orloca package. Ayuda y demo en espanol del paquete orloca. Objetos y metodos para manejar y resolver el problema de localizacion de suma minima, tambien conocido como problema de Fermat-Weber. El problema de localizacion de suma minima busca un punto tal que la suma ponderada de las distancias a los puntos de demanda se minimice. Vease "The Fermat-Weber location problem revisited" por Brimberg, Mathematical Programming, 1, pag. 71-76, 1995. <DOI: 10.1007/BF01592245>.
Se usan algoritmos generales de optimizacion global para resolver el problema, junto con el metodo especifico Weiszfeld, vease "Sur le point pour lequel la Somme des distance de n points donnes est minimum", por Weiszfeld, Tohoku Mathematical Journal, First Series, 43, pag. 355-386, 1937 o "On the point for which the sum of the distances to n given points is minimum", por E. Weiszfeld y F. Plastria, Annals of Operations Research, 167, pg. 7-41, 2009. <DOI:10.1007/s10479-008-0352-z& [...truncated...]
Author: Manuel Munoz-Marquez [aut, cre]
Maintainer: Manuel Munoz-Marquez <manuel.munoz@uca.es>
Diff between orloca.es versions 4.9 dated 2020-03-06 and 5.5 dated 2025-04-01
DESCRIPTION | 28 ++++++++++++------------ MD5 | 51 ++++++++++++++++++++++---------------------- NAMESPACE | 2 + build |only man/andalucia.Rd | 2 - man/as-methods.Rd | 6 ----- man/as.data.frame.loca.p.Rd | 11 ++++----- man/as.loca.p.Rd | 2 - man/as.loca.p.data.frame.Rd | 2 - man/as.loca.p.matrix.Rd | 2 - man/as.matrix.loca.p.Rd | 2 - man/contour.loca.p.Rd | 2 - man/distsum.Rd | 2 - man/distsumgra.Rd | 2 - man/distsuml2.Rd | 2 - man/distsuml2min.Rd | 2 - man/distsumlp.Rd | 2 - man/distsumlpmin.Rd | 2 - man/distsummin.Rd | 2 - man/loca.p.Rd | 4 +-- man/orloca.es-package.Rd | 14 ++++++++---- man/persp.loca.p.Rd | 2 - man/plot.Rd | 4 +-- man/rloca.p.Rd | 2 - man/zsum.Rd | 2 - man/zsumgra.Rd | 2 - man/zsummin.Rd | 2 - 27 files changed, 80 insertions(+), 76 deletions(-)
Title: Optimising Random Forest Stability by Determining the Optimal
Number of Trees
Description: Calculating the stability of random forest with certain numbers of trees. The non-linear relationship between stability and numbers of trees is described using a logistic regression model and used to estimate the optimal number of trees.
Author: Thomas Martin Lange [cre, aut]
,
Felix Heinrich [ctb]
Maintainer: Thomas Martin Lange <thomas.lange@uni-goettingen.de>
Diff between optRF versions 1.1.0 dated 2025-02-03 and 1.2.0 dated 2025-04-01
DESCRIPTION | 6 +- MD5 | 56 +++++++++++--------- NAMESPACE | 1 NEWS.md | 14 +++++ R/measure_stability.R |only R/opt_importance.R | 37 ++++++++----- R/opt_prediction.R | 42 +++++++++------ R/plot_stability.R | 10 +-- R/utils.R | 31 ++++++++--- README.md | 4 - build/vignette.rds |binary inst/CITATION | 9 +-- inst/doc/optRF.R | 17 ++++++ inst/doc/optRF.Rmd | 31 +++++++++++ inst/doc/optRF.html | 31 +++++++++++ inst/doc/opt_importance.R | 19 ++++++ inst/doc/opt_importance.Rmd | 36 +++++++++++- inst/doc/opt_importance.html | 40 +++++++++++++- inst/doc/opt_prediction.R | 17 ++++++ inst/doc/opt_prediction.Rmd | 32 ++++++++++- inst/doc/opt_prediction.html | 37 ++++++++++++- man/figures |only man/measure_stability.Rd |only man/opt_importance.Rd | 12 ++-- man/opt_prediction.Rd | 12 ++-- man/plot_stability.Rd | 8 +- vignettes/optRF.Rmd | 31 +++++++++++ vignettes/optRF_vignette_stabilityData.Rda |only vignettes/opt_importance.Rmd | 36 +++++++++++- vignettes/opt_importance_vignette_stabilityData.Rda |only vignettes/opt_prediction.Rmd | 32 ++++++++++- vignettes/opt_prediction_vignette_stabilityData.Rda |only 32 files changed, 495 insertions(+), 106 deletions(-)
Title: Compound Annual Growth Rate
Description: A time series usually does not have a uniform growth rate. Compound Annual Growth Rate measures the average annual growth over a given period. More details can be found in Bardhan et al. (2022) <DOI:10.18805/ag.D-5418>.
Author: Debopam Rakshit [aut, cre],
Dwaipayan Bardhan [aut]
Maintainer: Debopam Rakshit <rakshitdebopam@yahoo.com>
Diff between CAGR versions 1.1.0 dated 2024-03-02 and 1.1.1 dated 2025-04-01
DESCRIPTION | 9 +++++---- MD5 | 15 ++++++++------- NAMESPACE | 2 ++ R/CAGR.R | 51 ++++++++++++++++++++++++++++++++++++++++----------- man/CAGR.Rd | 6 +++--- man/LLTM.Rd |only man/data.first.Rd | 4 ++-- man/data.last.Rd | 4 ++-- man/n.years.Rd | 4 ++-- 9 files changed, 64 insertions(+), 31 deletions(-)
Title: In-Code Documentation for 'GAMS'
Description: A collection of tools which extract a model documentation from 'GAMS' code and comments.
In order to use the package you need to install 'pandoc' and 'pandoc-citeproc'
first (<https://pandoc.org/>).
Author: Jan Philipp Dietrich [aut, cre],
Kristine Karstens [aut],
David Klein [aut],
Lavinia Baumstark [aut],
Falk Benke [aut]
Maintainer: Jan Philipp Dietrich <dietrich@pik-potsdam.de>
Diff between goxygen versions 1.0.3 dated 2020-08-16 and 1.4.5 dated 2025-04-01
goxygen-1.0.3/goxygen/inst/templates/ming.css |only goxygen-1.0.3/goxygen/inst/templates/template.latex |only goxygen-1.0.3/goxygen/tests/testthat/test-travisCI.R |only goxygen-1.4.5/goxygen/DESCRIPTION | 22 goxygen-1.4.5/goxygen/MD5 | 72 +- goxygen-1.4.5/goxygen/NAMESPACE | 1 goxygen-1.4.5/goxygen/R/appendExtraPageBlocks.R |only goxygen-1.4.5/goxygen/R/buildHTML.R | 169 ++--- goxygen-1.4.5/goxygen/R/buildTEX.R | 23 goxygen-1.4.5/goxygen/R/chooseTemplate.R |only goxygen-1.4.5/goxygen/R/createListModularCode.R | 301 +++++---- goxygen-1.4.5/goxygen/R/createListSimpleCode.R | 46 - goxygen-1.4.5/goxygen/R/createModulePage.R | 95 +- goxygen-1.4.5/goxygen/R/extractDocumentation.R | 165 ++-- goxygen-1.4.5/goxygen/R/flattenPageBlockList.R |only goxygen-1.4.5/goxygen/R/goxygen.R | 140 ++-- goxygen-1.4.5/goxygen/R/helper_functions.R | 108 +-- goxygen-1.4.5/goxygen/R/mergeDocumentation.R | 10 goxygen-1.4.5/goxygen/R/oldBuildHTML.R | 2 goxygen-1.4.5/goxygen/README.md | 19 goxygen-1.4.5/goxygen/build/vignette.rds |binary goxygen-1.4.5/goxygen/inst/doc/goxygen.R | 4 goxygen-1.4.5/goxygen/inst/doc/goxygen.Rmd | 26 goxygen-1.4.5/goxygen/inst/doc/goxygen.html | 332 +++++++--- goxygen-1.4.5/goxygen/inst/templates/classic.latex |only goxygen-1.4.5/goxygen/inst/templates/ming |only goxygen-1.4.5/goxygen/inst/templates/ming.html5 | 10 goxygen-1.4.5/goxygen/man/appendExtraPageBlocks.Rd |only goxygen-1.4.5/goxygen/man/buildHTML.Rd | 13 goxygen-1.4.5/goxygen/man/buildTEX.Rd | 12 goxygen-1.4.5/goxygen/man/chooseTemplate.Rd |only goxygen-1.4.5/goxygen/man/createListModularCode.Rd | 10 goxygen-1.4.5/goxygen/man/createListSimpleCode.Rd | 2 goxygen-1.4.5/goxygen/man/createModulePage.Rd | 2 goxygen-1.4.5/goxygen/man/dot-section.Rd |only goxygen-1.4.5/goxygen/man/extractDocumentation.Rd | 14 goxygen-1.4.5/goxygen/man/flattenPageBlockList.Rd |only goxygen-1.4.5/goxygen/man/goxygen.Rd | 43 - goxygen-1.4.5/goxygen/tests/testthat/test-appendExtraPageBlocks.R |only goxygen-1.4.5/goxygen/tests/testthat/test-flattenPageBlockList.R |only goxygen-1.4.5/goxygen/tests/testthat/test-goxygen.R | 75 +- goxygen-1.4.5/goxygen/vignettes/goxygen.Rmd | 26 42 files changed, 1060 insertions(+), 682 deletions(-)
Title: Generalized Order-Restricted Information Criterion
Description: Generalized Order-Restricted Information Criterion (GORIC) value for a set of hypotheses in multivariate linear models and generalised linear models.
Author: Daniel Gerhard [aut, cre],
Rebecca M. Kuiper [aut]
Maintainer: Daniel Gerhard <00gerhard@gmail.com>
Diff between goric versions 1.1-2 dated 2021-04-19 and 1.1-3 dated 2025-04-01
DESCRIPTION | 8 - MD5 | 18 +-- build/vignette.rds |binary inst/doc/goric.R | 4 inst/doc/goric.Rmd | 4 inst/doc/goric.html | 285 +++++++++++++++++++++++++++++----------------------- man/orgls.Rd | 6 - man/orglsSet.Rd | 4 man/orlm.Rd | 2 vignettes/goric.Rmd | 4 10 files changed, 187 insertions(+), 148 deletions(-)
Title: Simple Animated Plots for R
Description: Simple animated versions of basic R plots, using the 'animation'
package. Includes animated versions of plot, barplot, persp, contour,
filled.contour, hist, curve, points, lines, text, symbols, segments, and
arrows.
Author: David Hugh-Jones [aut, cre]
Maintainer: David Hugh-Jones <davidhughjones@gmail.com>
Diff between anim.plots versions 0.2.2 dated 2021-04-30 and 0.2.3 dated 2025-04-01
DESCRIPTION | 15 + MD5 | 18 +- NEWS.md | 8 - R/anim.plots.R | 3 R/postprocessing.R | 4 build/vignette.rds |binary inst/doc/anim.plots-stub.R | 8 - inst/doc/anim.plots-stub.html | 331 ++++++++++++++++++++++++++++++++---------- man/anim.plots-package.Rd | 13 + man/anim.save.Rd | 4 10 files changed, 307 insertions(+), 97 deletions(-)
Title: Strategy Estimation
Description: Variants of strategy estimation (Dal Bo & Frechette, 2011, <doi:10.1257/aer.101.1.411>), including the model with parameters for the choice probabilities of the strategies (Breitmoser, 2015, <doi:10.1257/aer.20130675>), and the model with individual level covariates for the selection of strategies by individuals (Dvorak & Fehrler, 2018, <doi:10.2139/ssrn.2986445>).
Author: Fabian Dvorak [aut, cre]
Maintainer: Fabian Dvorak <fabian.dvorak@uni.kn>
Diff between stratEst versions 1.1.6 dated 2022-11-29 and 1.1.7 dated 2025-04-01
DESCRIPTION | 19 ++++++++++++------- MD5 | 36 ++++++++++++++++++------------------ R/is_stratEst_check.R | 2 +- R/is_stratEst_data.R | 2 +- R/is_stratEst_model.R | 2 +- R/is_stratEst_strategy.R | 2 +- R/summary_stratEst_data.R | 2 +- R/summary_stratEst_model.R | 2 +- README.md | 5 +++++ configure | 4 ++-- configure.ac | 6 +++--- inst/WORDLIST | 34 +++++++++++++++++++--------------- man/is.stratEst.check.Rd | 2 +- man/is.stratEst.data.Rd | 2 +- man/is.stratEst.model.Rd | 2 +- man/is.stratEst.strategy.Rd | 2 +- man/summary.stratEst.data.Rd | 2 +- man/summary.stratEst.model.Rd | 2 +- src/Makevars.win | 2 +- 19 files changed, 72 insertions(+), 58 deletions(-)
Title: Multiblock Data Fusion in Statistics and Machine Learning
Description: Functions and datasets to support Smilde, Næs and Liland (2021, ISBN: 978-1-119-60096-1)
"Multiblock Data Fusion in Statistics and Machine Learning - Applications in the Natural and Life Sciences".
This implements and imports a large collection of methods for multiblock data analysis with common interfaces, result- and plotting
functions, several real data sets and six vignettes covering a range different applications.
Author: Kristian Hovde Liland [aut, cre]
,
Solve Saeboe [ctb],
Stefan Schrunner [rev]
Maintainer: Kristian Hovde Liland <kristian.liland@nmbu.no>
Diff between multiblock versions 0.8.9.0 dated 2025-01-20 and 0.8.10 dated 2025-04-01
DESCRIPTION | 12 +++--- MD5 | 17 +++++--- NAMESPACE | 2 - R/datasets.R | 27 ++++++++++++++ R/direct_export.R | 6 +-- R/sopls.R | 87 ++++++++++++++++++++++++++++++++++++---------- R/sopls_crossvalidation.R | 4 +- data/mobile.rda |only man/figures/mobile.png |only man/mobile.Rd |only man/reexports.Rd | 3 - 11 files changed, 118 insertions(+), 40 deletions(-)
Title: Analyze Two Choice Reaction Time Data with the D*M Method
Description: A collection of functions to estimate parameters of a diffusion model via a D*M analysis. Build in models are: the Ratcliff diffusion model, the RWiener diffusion model, and Linear Ballistic Accumulator models. Custom models functions can be specified as long as they have a density function.
Author: Don van den Bergh [aut, cre] ,
Stijn Verdonck [aut] ,
Francis Tuerlinckx [aut]
Maintainer: Don van den Bergh <donvdbergh@hotmail.com>
Diff between DstarM versions 0.4.0 dated 2020-08-28 and 0.5.0 dated 2025-04-01
DstarM-0.4.0/DstarM/R/DstarMmethodsDeprecated.R |only DstarM-0.5.0/DstarM/DESCRIPTION | 22 ++++++++++++++++------ DstarM-0.5.0/DstarM/MD5 | 21 ++++++++++----------- DstarM-0.5.0/DstarM/NAMESPACE | 1 + DstarM-0.5.0/DstarM/NEWS.md | 6 ++++++ DstarM-0.5.0/DstarM/R/Densities.R | 9 +++++---- DstarM-0.5.0/DstarM/R/estDstarM.R | 6 +++--- DstarM-0.5.0/DstarM/R/estND.R | 4 ++-- DstarM-0.5.0/DstarM/man/Voss.density.Rd | 8 ++++---- DstarM-0.5.0/DstarM/man/estDstarM.Rd | 6 +++--- DstarM-0.5.0/DstarM/man/estND.Rd | 4 ++-- DstarM-0.5.0/DstarM/src/RcppExports.cpp | 5 +++++ 12 files changed, 57 insertions(+), 35 deletions(-)
Title: CAESAR: a Cross-Technology and Cross-Resolution Framework for
Spatial Omics Annotation
Description: Biotechnology in spatial omics has advanced rapidly over the past few years, enhancing both throughput and resolution. However, existing annotation pipelines in spatial omics predominantly rely on clustering methods, lacking the flexibility to integrate extensive annotated information from single-cell RNA sequencing (scRNA-seq) due to discrepancies in spatial resolutions, species, or modalities. Here we introduce the CAESAR suite, an open-source software package that provides image-based spatial co-embedding of locations and genomic features. It uniquely transfers labels from scRNA-seq reference, enabling the annotation of spatial omics datasets across different technologies, resolutions, species, and modalities, based on the conserved relationship between signature genes and cells/locations at an appropriate level of granularity. Notably, CAESAR enriches location-level pathways, allowing for the detection of gradual biological pathway activation within spatially defined domain types. [...truncated...]
Author: Xiao Zhang [aut, cre],
Wei Liu [aut],
Jin Liu [aut]
Maintainer: Xiao Zhang <zhangxiao1994@cuhk.edu.cn>
Diff between CAESAR.Suite versions 0.2.1 dated 2025-03-25 and 0.2.2 dated 2025-04-01
DESCRIPTION | 6 +- MD5 | 8 +-- inst/doc/STMOB.html | 10 ++-- inst/doc/XeniumBC.html | 106 ++++++++++++++++++++++++------------------------- src/imfactor.cpp | 2 5 files changed, 67 insertions(+), 65 deletions(-)
Title: Interact with Peak Flow Data in the United Kingdom
Description: Obtain information on peak flow data from the National River Flow Archive (NRFA) in the United Kingdom, either from the Peak Flow Dataset files <https://nrfa.ceh.ac.uk/data/peak-flow-dataset> once these have been downloaded to the user's computer or using the NRFA's API. These files are in a format suitable for direct use in the 'WINFAP' software, hence the name of the package.
Author: Ilaria Prosdocimi [aut, cre] ,
Luke Shaw [aut]
Maintainer: Ilaria Prosdocimi <prosdocimi.ilaria@gmail.com>
Diff between winfapReader versions 0.1-5.1 dated 2024-06-19 and 0.1-6 dated 2025-04-01
DESCRIPTION | 10 - MD5 | 28 ++-- NAMESPACE | 1 NEWS.md | 4 R/dateManupulations.R | 312 ++++++++++++++++++++++----------------------- R/get_winfapapi.R | 2 R/readerFuncs.R | 9 - build/vignette.rds |binary inst/doc/winfapReader.R | 98 +++++++------- inst/doc/winfapReader.Rmd | 10 - inst/doc/winfapReader.html | 129 +++++++++++------- man/get_pot.Rd | 2 man/read_cd3.Rd | 2 tests/testthat/testthat.R | 4 vignettes/winfapReader.Rmd | 10 - 15 files changed, 337 insertions(+), 284 deletions(-)
Title: Utilities for Handling Strings and Text
Description: Utilities for handling character vectors
that store human-readable text (either plain or with
markup, such as HTML or LaTeX). The package provides,
in particular, functions that help with the
preparation of plain-text reports, e.g. for expanding
and aligning strings that form the lines of such
reports. The package also provides generic functions for
transforming R objects to HTML and to plain text.
Author: Enrico Schumann [aut, cre]
Maintainer: Enrico Schumann <es@enricoschumann.net>
Diff between textutils versions 0.4-1 dated 2024-04-01 and 0.4-2 dated 2025-04-01
DESCRIPTION | 10 +++--- MD5 | 26 ++++++++-------- NAMESPACE | 1 NEWS | 18 ++++++++++- R/functions.R | 69 +++++++++++++++++++++++++++++++++++++++----- build/partial.rdb |binary build/vignette.rds |binary inst/doc/btable.pdf |binary inst/tinytest/test_HTMLrm.R | 10 +++--- inst/tinytest/test_insert.R | 5 ++- inst/tinytest/test_toHTML.R | 47 +++++++++++++++++++++++++++++ man/HTMLdecode.Rd | 9 +++-- man/insert.Rd | 4 +- man/toHTML.Rd | 18 +++++++---- 14 files changed, 174 insertions(+), 43 deletions(-)
Title: Grouped Hyper Data Frame: An Extension of Hyper Data Frame
Object
Description: An S3 class 'groupedHyperframe' that inherits from
hyper data frame. Batch processes on point-pattern hyper
column. Aggregation of function-value-table hyper
column(s) and numeric hyper column(s) over a nested
grouping structure.
Author: Tingting Zhan [aut, cre] ,
Inna Chervoneva [aut]
Maintainer: Tingting Zhan <tingtingzhan@gmail.com>
Diff between groupedHyperframe versions 0.1.0 dated 2025-03-25 and 0.2.1 dated 2025-04-01
groupedHyperframe-0.1.0/groupedHyperframe/R/fv_S3.R |only groupedHyperframe-0.1.0/groupedHyperframe/R/key1nonfinite.fv.R |only groupedHyperframe-0.1.0/groupedHyperframe/R/nncross_.R |only groupedHyperframe-0.1.0/groupedHyperframe/man/fvlist.Rd |only groupedHyperframe-0.1.0/groupedHyperframe/man/groupedHyperframe.Rd |only groupedHyperframe-0.1.0/groupedHyperframe/man/is.finite.fv.Rd |only groupedHyperframe-0.1.0/groupedHyperframe/man/key1nonfinite-set.Rd |only groupedHyperframe-0.1.0/groupedHyperframe/man/op_fv.Rd |only groupedHyperframe-0.2.1/groupedHyperframe/DESCRIPTION | 12 groupedHyperframe-0.2.1/groupedHyperframe/MD5 | 81 groupedHyperframe-0.2.1/groupedHyperframe/NAMESPACE | 18 groupedHyperframe-0.2.1/groupedHyperframe/R/0PACKAGE.R | 8 groupedHyperframe-0.2.1/groupedHyperframe/R/aggregate_fv.R | 52 groupedHyperframe-0.2.1/groupedHyperframe/R/aggregate_num.R | 100 - groupedHyperframe-0.2.1/groupedHyperframe/R/as.groupedHyperframe.R | 66 groupedHyperframe-0.2.1/groupedHyperframe/R/data_doc.R | 13 groupedHyperframe-0.2.1/groupedHyperframe/R/fvlist.R | 135 - groupedHyperframe-0.2.1/groupedHyperframe/R/groupedHyperframe.R | 48 groupedHyperframe-0.2.1/groupedHyperframe/R/grouped_ppp.R | 60 groupedHyperframe-0.2.1/groupedHyperframe/R/key1.R |only groupedHyperframe-0.2.1/groupedHyperframe/R/mc_identical_by.R |only groupedHyperframe-0.2.1/groupedHyperframe/R/nncross.R |only groupedHyperframe-0.2.1/groupedHyperframe/R/op_hyperframe.R | 30 groupedHyperframe-0.2.1/groupedHyperframe/R/op_ppp.R | 22 groupedHyperframe-0.2.1/groupedHyperframe/R/op_ppplist.R | 26 groupedHyperframe-0.2.1/groupedHyperframe/R/pmean.R |only groupedHyperframe-0.2.1/groupedHyperframe/R/slice.R |only groupedHyperframe-0.2.1/groupedHyperframe/R/user_hyperframe.R | 25 groupedHyperframe-0.2.1/groupedHyperframe/data/Ki67.rda |binary groupedHyperframe-0.2.1/groupedHyperframe/inst/doc/intro.R | 114 - groupedHyperframe-0.2.1/groupedHyperframe/inst/doc/intro.Rmd | 232 +- groupedHyperframe-0.2.1/groupedHyperframe/inst/doc/intro.html | 968 ++++++---- groupedHyperframe-0.2.1/groupedHyperframe/man/Ki67.Rd | 15 groupedHyperframe-0.2.1/groupedHyperframe/man/aggregate_by_.Rd | 12 groupedHyperframe-0.2.1/groupedHyperframe/man/aggregate_fv.Rd | 17 groupedHyperframe-0.2.1/groupedHyperframe/man/aggregate_num.Rd | 7 groupedHyperframe-0.2.1/groupedHyperframe/man/as.groupedHyperframe.Rd | 26 groupedHyperframe-0.2.1/groupedHyperframe/man/check_fvlist.Rd | 8 groupedHyperframe-0.2.1/groupedHyperframe/man/dot-nncross.Rd | 3 groupedHyperframe-0.2.1/groupedHyperframe/man/dot-slice.Rd |only groupedHyperframe-0.2.1/groupedHyperframe/man/groupedHyperframe-package.Rd | 8 groupedHyperframe-0.2.1/groupedHyperframe/man/grouped_ppp.Rd | 13 groupedHyperframe-0.2.1/groupedHyperframe/man/key1.Rd |only groupedHyperframe-0.2.1/groupedHyperframe/man/mc_identical_by.Rd |only groupedHyperframe-0.2.1/groupedHyperframe/man/op_hyperframe.Rd | 23 groupedHyperframe-0.2.1/groupedHyperframe/man/op_ppp.Rd | 4 groupedHyperframe-0.2.1/groupedHyperframe/man/op_ppplist.Rd | 11 groupedHyperframe-0.2.1/groupedHyperframe/man/pmean.Rd |only groupedHyperframe-0.2.1/groupedHyperframe/man/user_hyperframe.Rd | 7 groupedHyperframe-0.2.1/groupedHyperframe/vignettes/intro.Rmd | 232 +- 50 files changed, 1263 insertions(+), 1133 deletions(-)
More information about groupedHyperframe at CRAN
Permanent link
Title: Generalized Linear Latent Variable Models
Description: Analysis of multivariate data using generalized linear latent variable models (gllvm).
Estimation is performed using either the Laplace method, variational approximations, or extended variational approximations, implemented via TMB (Kristensen et al. (2016), <doi:10.18637/jss.v070.i05>).
Author: Jenni Niku [aut, cre],
Wesley Brooks [aut],
Riki Herliansyah [aut],
Francis K.C. Hui [aut],
Pekka Korhonen [aut],
Sara Taskinen [aut],
Bert van der Veen [aut],
David I. Warton [aut]
Maintainer: Jenni Niku <jenni.m.e.niku@jyu.fi>
Diff between gllvm versions 2.0 dated 2024-11-26 and 2.0.1 dated 2025-04-01
gllvm-2.0.1/gllvm/DESCRIPTION | 10 gllvm-2.0.1/gllvm/MD5 | 98 +-- gllvm-2.0.1/gllvm/NAMESPACE | 9 gllvm-2.0.1/gllvm/NEWS.md | 29 + gllvm-2.0.1/gllvm/R/TMBtrait.R | 159 +++--- gllvm-2.0.1/gllvm/R/VP.gllvm.R | 94 ++- gllvm-2.0.1/gllvm/R/coefplot.gllvm.R | 2 gllvm-2.0.1/gllvm/R/getEnvironCov.gllvm.R | 129 ++-- gllvm-2.0.1/gllvm/R/gllvm.R | 87 +-- gllvm-2.0.1/gllvm/R/gllvm.TMB.R | 138 +++-- gllvm-2.0.1/gllvm/R/gllvm.auxiliary.R | 178 ++++-- gllvm-2.0.1/gllvm/R/gllvm.iter.R | 9 gllvm-2.0.1/gllvm/R/gllvm.makeform.R | 2 gllvm-2.0.1/gllvm/R/goodnessOfFit.gllvm.R |only gllvm-2.0.1/gllvm/R/logLik.gllvm.R | 7 gllvm-2.0.1/gllvm/R/phyloplot.gllvm.R | 8 gllvm-2.0.1/gllvm/R/plotVP.gllvm.R | 40 - gllvm-2.0.1/gllvm/R/predict.gllvm.R | 2 gllvm-2.0.1/gllvm/R/randomCoefplot.R | 16 gllvm-2.0.1/gllvm/R/residuals.gllvm.R | 117 ++-- gllvm-2.0.1/gllvm/R/se.gllvm.R | 71 +- gllvm-2.0.1/gllvm/R/summary.gllvm.R | 29 + gllvm-2.0.1/gllvm/README.md | 12 gllvm-2.0.1/gllvm/inst/doc/vignette1.Rmd | 6 gllvm-2.0.1/gllvm/inst/doc/vignette1.html | 53 +- gllvm-2.0.1/gllvm/inst/doc/vignette2.R | 3 gllvm-2.0.1/gllvm/inst/doc/vignette2.html | 15 gllvm-2.0.1/gllvm/inst/doc/vignette2.rmd | 5 gllvm-2.0.1/gllvm/inst/doc/vignette3.html | 606 +++++++++++------------ gllvm-2.0.1/gllvm/inst/doc/vignette4.html | 146 ++--- gllvm-2.0.1/gllvm/inst/doc/vignette5.html | 4 gllvm-2.0.1/gllvm/inst/doc/vignette6.Rmd | 27 - gllvm-2.0.1/gllvm/inst/doc/vignette6.html | 39 - gllvm-2.0.1/gllvm/inst/doc/vignette8.html | 218 ++++---- gllvm-2.0.1/gllvm/inst/doc/vignette9.Rmd | 12 gllvm-2.0.1/gllvm/inst/doc/vignette9.html | 12 gllvm-2.0.1/gllvm/man/AICc.Rd | 48 - gllvm-2.0.1/gllvm/man/VP.gllvm.Rd |only gllvm-2.0.1/gllvm/man/coefplot.gllvm.Rd | 2 gllvm-2.0.1/gllvm/man/getEnvironCov.gllvm.Rd | 6 gllvm-2.0.1/gllvm/man/gllvm.Rd | 20 gllvm-2.0.1/gllvm/man/goodnessOfFit.Rd |only gllvm-2.0.1/gllvm/man/phyloplot.gllvm.Rd | 3 gllvm-2.0.1/gllvm/src/gllvm.cpp | 210 ++++++- gllvm-2.0.1/gllvm/tests/testthat/test-fitgllvm.R | 14 gllvm-2.0.1/gllvm/vignettes/fit_4th.Rdata |only gllvm-2.0.1/gllvm/vignettes/rcoefs-1.png |binary gllvm-2.0.1/gllvm/vignettes/vignette1.Rmd | 6 gllvm-2.0.1/gllvm/vignettes/vignette2.rmd | 5 gllvm-2.0.1/gllvm/vignettes/vignette6.Rmd | 27 - gllvm-2.0.1/gllvm/vignettes/vignette9.Rmd | 12 gllvm-2.0/gllvm/man/varPartitioning.gllvm.Rd |only gllvm-2.0/gllvm/vignettes/fit_4th.RData |only 53 files changed, 1609 insertions(+), 1136 deletions(-)
Title: Utilities for Dates and Times
Description: Utilities for handling dates and times, such
as selecting particular days of the week or month,
formatting timestamps as required by RSS feeds, or
converting timestamp representations of other software
(such as 'MATLAB' and 'Excel') to R. The package is
lightweight (no dependencies, pure R implementations) and
relies only on R's standard classes to represent dates
and times ('Date' and 'POSIXt'); it aims to provide
efficient implementations, through vectorisation and the
use of R's native numeric representations of timestamps
where possible.
Author: Enrico Schumann [aut, cre] ,
Unicode, Inc. [dtc, cph]
Maintainer: Enrico Schumann <es@enricoschumann.net>
Diff between datetimeutils versions 0.6-4 dated 2024-04-01 and 0.6-5 dated 2025-04-01
DESCRIPTION | 10 +++++----- MD5 | 25 +++++++++++++------------ NAMESPACE | 1 + NEWS | 8 ++++++++ R/data.R | 34 +++++++++++++++++++++++++++++++++- README.md | 20 +++++++++----------- build/partial.rdb |binary build/vignette.rds |binary data/tznames.RData |binary inst/doc/datetimeutils_examples.pdf |binary man/Easter.Rd |only man/date1904.Rd | 3 +-- man/rfc822t.Rd | 2 +- man/tznames.Rd | 2 +- 14 files changed, 72 insertions(+), 33 deletions(-)
Title: Cluster-Robust (Sandwich) Variance Estimators with Small-Sample
Corrections
Description: Provides several cluster-robust variance estimators (i.e.,
sandwich estimators) for ordinary and weighted least squares linear regression
models, including the bias-reduced linearization estimator introduced by Bell
and McCaffrey (2002)
<https://www150.statcan.gc.ca/n1/pub/12-001-x/2002002/article/9058-eng.pdf> and
developed further by Pustejovsky and Tipton (2017)
<DOI:10.1080/07350015.2016.1247004>. The package includes functions for estimating
the variance- covariance matrix and for testing single- and multiple-
contrast hypotheses based on Wald test statistics. Tests of single regression
coefficients use Satterthwaite or saddle-point corrections. Tests of multiple-
contrast hypotheses use an approximation to Hotelling's T-squared distribution.
Methods are provided for a variety of fitted models, including lm() and mlm
objects, glm(), geeglm() (from package 'geepack'), ivreg() (from package 'AER'), ivreg() (from package 'ivreg' when
estimated by ordinary least squares), [...truncated...]
Author: James E. Pustejovsky [aut, cre]
,
Samuel Pekofsky [ctb],
Jingru Zhang [ctb]
Maintainer: James E. Pustejovsky <jepusto@gmail.com>
Diff between clubSandwich versions 0.5.11 dated 2024-06-20 and 0.6.0 dated 2025-04-01
DESCRIPTION | 21 + MD5 | 51 ++- NEWS.md | 8 R/Wald_test.R | 138 +++++++++- R/coef_test.R | 96 +++++-- R/conf_int.R | 34 ++ R/geeglm.R | 3 R/rma-mv.R | 4 build/partial.rdb |binary build/vignette.rds |binary inst/doc/Wald-tests-in-clubSandwich.html | 167 ++++++------- inst/doc/meta-analysis-with-CRVE.html | 53 ++-- inst/doc/panel-data-CRVE.Rmd | 10 inst/doc/panel-data-CRVE.html | 95 ++++--- man/Wald_test.Rd | 53 +++- man/coef_test.Rd | 30 +- man/conf_int.Rd | 2 man/linear_contrast.Rd | 13 - tests/testthat/test_Wald.R | 126 +++++++++ tests/testthat/test_Wald_multiple_comparisons.R |only tests/testthat/test_coef.R | 69 +++++ tests/testthat/test_geeglm.R | 92 ++++++- tests/testthat/test_gls.R | 8 tests/testthat/test_impute_covariance_matrix.R | 6 tests/testthat/test_linear_contrast_multiple_comparisons.R |only tests/testthat/test_lm_robust.R |only tests/testthat/test_rma-mv.R | 62 ++-- vignettes/panel-data-CRVE.Rmd | 10 28 files changed, 841 insertions(+), 310 deletions(-)
Title: Small Area Estimation for Key Health and Demographic Indicators
from Household Surveys
Description: Enables small area estimation (SAE) of health and demographic indicators in low- and middle-income countries (LMICs). It powers an R 'shiny' application that helps public health analysts, policymakers, and researchers generate subnational estimates and prevalence maps for 150+ binary indicators from Demographic and Health Surveys (DHS). Basing its core SAE analysis workflow on the 'surveyPrev' package, the app ensures methodological rigor through guided model selection, automated fitting, and interactive visualization. For more details, visit <https://sae4health.stat.uw.edu/>.
Author: Yunhan Wu [cre, aut],
Qianyu Dong [aut],
Zehang R Li [aut],
Jon Wakefield [aut]
Maintainer: Yunhan Wu <wu-thomas@outlook.com>
Diff between sae4health versions 1.2.0 dated 2025-03-28 and 1.2.1 dated 2025-04-01
DESCRIPTION | 6 MD5 | 22 R/app_ui.R | 382 +++--- R/fct_analysis_helpers.R | 13 R/fct_helpers.R | 637 +++++----- R/fct_results_visual_helpers.R | 6 R/mod_country_specify.R | 2360 +++++++++++++++++++------------------- R/mod_landing_page.R | 760 ++++++------ R/mod_model_selection.R | 214 ++- R/prepare_preload_dat.R | 8 README.md | 11 tests/testthat/test-app-loading.R | 102 - 12 files changed, 2319 insertions(+), 2202 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-06-15 0.6.0
2023-12-05 0.5.0
2023-05-11 0.4.0
2021-10-11 0.3.0
2021-06-22 0.2.0
2021-01-14 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-03-26 1.0.3
2025-02-06 1.0.2