Title: Collection of Methods Constructed using Kernel-Based Quadratic
Distances
Description: It includes test for multivariate normality, test for uniformity on the d-dimensional
Sphere, non-parametric two- and k-sample tests, random generation of points from the Poisson
kernel-based density and clustering algorithm for spherical data. For more information see
Saraceno G., Markatou M., Mukhopadhyay R. and Golzy M. (2024)
<doi:10.48550/arXiv.2402.02290>
Markatou, M. and Saraceno, G. (2024) <doi:10.48550/arXiv.2407.16374>,
Ding, Y., Markatou, M. and Saraceno, G. (2023) <doi:10.5705/ss.202022.0347>,
and Golzy, M. and Markatou, M. (2020) <doi:10.1080/10618600.2020.1740713>.
Author: Giovanni Saraceno [aut, cre] ,
Marianthi Markatou [aut],
Raktim Mukhopadhyay [aut],
Mojgan Golzy [aut],
Hingee Kassel [rev],
Emi Tanaka [rev]
Maintainer: Giovanni Saraceno <giovanni.saraceno@unipd.it>
Diff between QuadratiK versions 1.1.2 dated 2024-10-29 and 1.1.3 dated 2025-02-04
QuadratiK-1.1.2/QuadratiK/tests/testthat/Rplots.pdf |only QuadratiK-1.1.3/QuadratiK/DESCRIPTION | 26 - QuadratiK-1.1.3/QuadratiK/MD5 | 127 +++---- QuadratiK-1.1.3/QuadratiK/NAMESPACE | 130 ++++--- QuadratiK-1.1.3/QuadratiK/NEWS.md | 41 ++ QuadratiK-1.1.3/QuadratiK/R/QuadratiK-package.R | 5 QuadratiK-1.1.3/QuadratiK/R/RcppExports.R | 20 - QuadratiK-1.1.3/QuadratiK/R/breast_cancer.R | 2 QuadratiK-1.1.3/QuadratiK/R/classes.R | 10 QuadratiK-1.1.3/QuadratiK/R/clustering_functions.R | 137 ++++---- QuadratiK-1.1.3/QuadratiK/R/critical_value.R | 12 QuadratiK-1.1.3/QuadratiK/R/h_selection.R | 16 QuadratiK-1.1.3/QuadratiK/R/kb.test.R | 29 - QuadratiK-1.1.3/QuadratiK/R/pk.test.R | 32 + QuadratiK-1.1.3/QuadratiK/R/pkbd_functions.R | 29 - QuadratiK-1.1.3/QuadratiK/R/srr-stats-standards.R | 1 QuadratiK-1.1.3/QuadratiK/R/utility.R | 19 - QuadratiK-1.1.3/QuadratiK/R/wine.R | 2 QuadratiK-1.1.3/QuadratiK/R/wireless.R | 2 QuadratiK-1.1.3/QuadratiK/README.md | 21 - QuadratiK-1.1.3/QuadratiK/inst/CITATION | 2 QuadratiK-1.1.3/QuadratiK/inst/doc/Introduction.R | 30 - QuadratiK-1.1.3/QuadratiK/inst/doc/Introduction.Rmd | 38 +- QuadratiK-1.1.3/QuadratiK/inst/doc/Introduction.html | 124 +++---- QuadratiK-1.1.3/QuadratiK/inst/doc/TwoSample_test.R | 28 - QuadratiK-1.1.3/QuadratiK/inst/doc/TwoSample_test.Rmd | 14 QuadratiK-1.1.3/QuadratiK/inst/doc/TwoSample_test.html | 16 QuadratiK-1.1.3/QuadratiK/inst/doc/generate_rpkb.R | 34 -- QuadratiK-1.1.3/QuadratiK/inst/doc/generate_rpkb.Rmd | 26 - QuadratiK-1.1.3/QuadratiK/inst/doc/generate_rpkb.html | 203 +++++++----- QuadratiK-1.1.3/QuadratiK/inst/doc/kSample_test.R | 22 - QuadratiK-1.1.3/QuadratiK/inst/doc/kSample_test.Rmd | 10 QuadratiK-1.1.3/QuadratiK/inst/doc/kSample_test.html | 12 QuadratiK-1.1.3/QuadratiK/inst/doc/uniformity.R | 16 QuadratiK-1.1.3/QuadratiK/inst/doc/uniformity.Rmd | 8 QuadratiK-1.1.3/QuadratiK/inst/doc/uniformity.html | 8 QuadratiK-1.1.3/QuadratiK/inst/doc/wireless_clustering.R | 16 QuadratiK-1.1.3/QuadratiK/inst/doc/wireless_clustering.Rmd | 8 QuadratiK-1.1.3/QuadratiK/inst/doc/wireless_clustering.html | 26 - QuadratiK-1.1.3/QuadratiK/man/QuadratiK-package.Rd | 11 QuadratiK-1.1.3/QuadratiK/man/dpkb.Rd | 23 - QuadratiK-1.1.3/QuadratiK/man/kb.test-class.Rd | 10 QuadratiK-1.1.3/QuadratiK/man/kb.test.Rd | 16 QuadratiK-1.1.3/QuadratiK/man/pk.test.Rd | 22 - QuadratiK-1.1.3/QuadratiK/man/pkbc.Rd | 34 +- QuadratiK-1.1.3/QuadratiK/man/pkbc_validation.Rd | 30 - QuadratiK-1.1.3/QuadratiK/man/plot.pkbc.Rd | 132 +++---- QuadratiK-1.1.3/QuadratiK/man/predict.pkbc.Rd | 10 QuadratiK-1.1.3/QuadratiK/man/select_h.Rd | 6 QuadratiK-1.1.3/QuadratiK/man/summary.kb.test.Rd | 72 ++-- QuadratiK-1.1.3/QuadratiK/man/summary.pk.test.Rd | 72 ++-- QuadratiK-1.1.3/QuadratiK/man/summary.pkbc.Rd | 4 QuadratiK-1.1.3/QuadratiK/tests/testthat/test-dpkb.R | 26 - QuadratiK-1.1.3/QuadratiK/tests/testthat/test-kb.test.R | 3 QuadratiK-1.1.3/QuadratiK/tests/testthat/test-pk.test.R | 2 QuadratiK-1.1.3/QuadratiK/tests/testthat/test-pkbc.R | 36 +- QuadratiK-1.1.3/QuadratiK/tests/testthat/test-rpkb.R | 42 +- QuadratiK-1.1.3/QuadratiK/tests/testthat/test-select_h.R | 3 QuadratiK-1.1.3/QuadratiK/tests/testthat/test-validation.R | 2 QuadratiK-1.1.3/QuadratiK/vignettes/Introduction.Rmd | 38 +- QuadratiK-1.1.3/QuadratiK/vignettes/TwoSample_test.Rmd | 14 QuadratiK-1.1.3/QuadratiK/vignettes/generate_rpkb.Rmd | 26 - QuadratiK-1.1.3/QuadratiK/vignettes/kSample_test.Rmd | 10 QuadratiK-1.1.3/QuadratiK/vignettes/uniformity.Rmd | 8 QuadratiK-1.1.3/QuadratiK/vignettes/wireless_clustering.Rmd | 8 65 files changed, 1042 insertions(+), 920 deletions(-)
Title: Meta Clustering with Similarity Network Fusion
Description: Framework to facilitate patient subtyping with similarity network fusion and meta clustering. The similarity network fusion (SNF) algorithm was introduced by Wang et al. (2014) in <doi:10.1038/nmeth.2810>. SNF is a data integration approach that can transform high-dimensional and diverse data types into a single similarity network suitable for clustering with minimal loss of information from each initial data source. The meta clustering approach was introduced by Caruana et al. (2006) in <doi:10.1109/ICDM.2006.103>. Meta clustering involves generating a wide range of cluster solutions by adjusting clustering hyperparameters, then clustering the solutions themselves into a manageable number of qualitatively similar solutions, and finally characterizing representative solutions to find ones that are best for the user's specific context. This package provides a framework to easily transform multi-modal data into a wide range of similarity network fusion-derived cluster solutio [...truncated...]
Author: Prashanth S Velayudhan [aut, cre],
Xiaoqiao Xu [aut],
Prajkta Kallurkar [aut],
Ana Patricia Balbon [aut],
Maria T Secara [aut],
Adam Taback [aut],
Denise Sabac [aut],
Nicholas Chan [aut],
Shihao Ma [aut],
Bo Wang [aut],
Daniel Felsky [aut],
Stephanie [...truncated...]
Maintainer: Prashanth S Velayudhan <psvelayu@gmail.com>
Diff between metasnf versions 1.1.1 dated 2024-11-08 and 2.0.0 dated 2025-02-04
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metasnf-2.0.0/metasnf/man/check_cfll_fns.Rd |only metasnf-2.0.0/metasnf/man/check_cfll_named.Rd |only metasnf-2.0.0/metasnf/man/check_cfll_unique_names.Rd |only metasnf-2.0.0/metasnf/man/check_compatible_sdf_cfl.Rd |only metasnf-2.0.0/metasnf/man/check_compatible_sdf_dfl.Rd |only metasnf-2.0.0/metasnf/man/check_compatible_sdf_wm.Rd |only metasnf-2.0.0/metasnf/man/check_dataless_annotations.Rd | 2 metasnf-2.0.0/metasnf/man/check_dfll_fn_args.Rd |only metasnf-2.0.0/metasnf/man/check_dfll_fn_names.Rd |only metasnf-2.0.0/metasnf/man/check_dfll_item_names.Rd |only metasnf-2.0.0/metasnf/man/check_dfll_subitems_are_fns.Rd |only metasnf-2.0.0/metasnf/man/check_dfll_unique_names.Rd |only metasnf-2.0.0/metasnf/man/check_dll_duplicate_components.Rd |only metasnf-2.0.0/metasnf/man/check_dll_duplicate_features.Rd |only metasnf-2.0.0/metasnf/man/check_dll_empty_input.Rd |only metasnf-2.0.0/metasnf/man/check_dll_four_subitems.Rd |only metasnf-2.0.0/metasnf/man/check_dll_inherits_list.Rd |only metasnf-2.0.0/metasnf/man/check_dll_subitem_classes.Rd |only metasnf-2.0.0/metasnf/man/check_dll_subitem_names.Rd |only metasnf-2.0.0/metasnf/man/check_dll_types.Rd |only metasnf-2.0.0/metasnf/man/check_dll_uid.Rd |only metasnf-2.0.0/metasnf/man/check_sdfl_colnames.Rd |only metasnf-2.0.0/metasnf/man/check_sdfl_is_df.Rd |only metasnf-2.0.0/metasnf/man/check_sdfl_numeric.Rd |only metasnf-2.0.0/metasnf/man/check_valid_k.Rd |only metasnf-2.0.0/metasnf/man/check_valid_sc.Rd |only metasnf-2.0.0/metasnf/man/chi_squared_pval.Rd | 3 metasnf-2.0.0/metasnf/man/clust_fns.Rd |only metasnf-2.0.0/metasnf/man/clust_fns_list.Rd |only metasnf-2.0.0/metasnf/man/cocluster_density.Rd | 34 metasnf-2.0.0/metasnf/man/cocluster_heatmap.Rd | 59 metasnf-2.0.0/metasnf/man/coclustering_coverage_check.Rd | 5 metasnf-2.0.0/metasnf/man/collapse_dl.Rd | 8 metasnf-2.0.0/metasnf/man/config_heatmap.Rd |only metasnf-2.0.0/metasnf/man/convert_uids.Rd | 13 metasnf-2.0.0/metasnf/man/cort_sa.Rd | 2 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metasnf-2.0.0/metasnf/man/features.Rd |only metasnf-2.0.0/metasnf/man/figures |only metasnf-2.0.0/metasnf/man/fisher_exact_pval.Rd | 3 metasnf-2.0.0/metasnf/man/generate_annotations_list.Rd | 3 metasnf-2.0.0/metasnf/man/generate_clust_algs_list.Rd | 48 metasnf-2.0.0/metasnf/man/generate_distance_metrics_list.Rd | 48 metasnf-2.0.0/metasnf/man/generate_settings_matrix.Rd | 183 - metasnf-2.0.0/metasnf/man/get_cluster_df.Rd | 24 metasnf-2.0.0/metasnf/man/get_cluster_solutions.Rd | 28 metasnf-2.0.0/metasnf/man/get_clusters.Rd | 20 metasnf-2.0.0/metasnf/man/get_complete_uids.Rd | 40 metasnf-2.0.0/metasnf/man/get_dist_matrix.Rd | 15 metasnf-2.0.0/metasnf/man/get_dl_uids.Rd |only metasnf-2.0.0/metasnf/man/get_matrix_order.Rd | 44 metasnf-2.0.0/metasnf/man/get_mean_pval.Rd | 9 metasnf-2.0.0/metasnf/man/get_min_pval.Rd | 9 metasnf-2.0.0/metasnf/man/get_pvals.Rd | 18 metasnf-2.0.0/metasnf/man/get_representative_solutions.Rd | 65 metasnf-2.0.0/metasnf/man/gexclude.Rd |only 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Title: Forest Inventory Estimation and Analysis
Description: A research estimation tool for analysts that work with sample-based
inventory data from the U.S. Department of Agriculture, Forest Service,
Forest Inventory and Analysis (FIA) Program.
Author: Tracey Frescino [aut],
Gretchen Moisen [aut],
Paul Patterson [aut],
Chris Toney [aut],
Grayson White [aut, cre] ,
Joshua Yamamoto [aut]
Maintainer: Grayson White <graysonwhite13@gmail.com>
Diff between FIESTA versions 3.6.4 dated 2024-06-07 and 3.7.0 dated 2025-02-04
FIESTA-3.6.4/FIESTA/R/check.pltcnt.R |only FIESTA-3.6.4/FIESTA/R/check.popdataDWM.R |only FIESTA-3.6.4/FIESTA/R/getpse.R |only FIESTA-3.6.4/FIESTA/R/modGBdwm.R |only FIESTA-3.6.4/FIESTA/R/modWFarea.R |only FIESTA-3.6.4/FIESTA/R/modWFpop.R |only FIESTA-3.6.4/FIESTA/R/modWFtree.R |only FIESTA-3.6.4/FIESTA/R/popFilters.R |only FIESTA-3.6.4/FIESTA/R/popTableIDs.R |only FIESTA-3.6.4/FIESTA/R/popTables.R |only FIESTA-3.6.4/FIESTA/man/modGBdwm.Rd |only FIESTA-3.6.4/FIESTA/man/modWFarea.Rd |only FIESTA-3.6.4/FIESTA/man/modWFpop.Rd |only FIESTA-3.6.4/FIESTA/man/modWFtree.Rd |only FIESTA-3.6.4/FIESTA/man/popFilters.Rd |only FIESTA-3.6.4/FIESTA/man/popTableIDs.Rd |only FIESTA-3.6.4/FIESTA/man/popTables.Rd |only FIESTA-3.7.0/FIESTA/DESCRIPTION | 12 FIESTA-3.7.0/FIESTA/MD5 | 336 FIESTA-3.7.0/FIESTA/NAMESPACE | 16 FIESTA-3.7.0/FIESTA/NEWS.md | 95 FIESTA-3.7.0/FIESTA/R/DBgetCSV.R | 21 FIESTA-3.7.0/FIESTA/R/DBgetEvalid.R | 796 - FIESTA-3.7.0/FIESTA/R/DBgetPlots.R | 1553 +-- FIESTA-3.7.0/FIESTA/R/DBgetXY.R | 310 FIESTA-3.7.0/FIESTA/R/FIESTA-package.R | 52 FIESTA-3.7.0/FIESTA/R/ISAinternal.R | 31 FIESTA-3.7.0/FIESTA/R/SQLite_FIADB_ENTIRE_create_indices.R |only FIESTA-3.7.0/FIESTA/R/check.PROPvars.R | 13 FIESTA-3.7.0/FIESTA/R/check.auxiliary.R | 295 FIESTA-3.7.0/FIESTA/R/check.cond.R |only FIESTA-3.7.0/FIESTA/R/check.condCHNG.R |only FIESTA-3.7.0/FIESTA/R/check.estdata.R | 527 - FIESTA-3.7.0/FIESTA/R/check.estdataP2VEG.R |only FIESTA-3.7.0/FIESTA/R/check.estdataVOL.R |only FIESTA-3.7.0/FIESTA/R/check.outparams.R | 54 FIESTA-3.7.0/FIESTA/R/check.popdataCHNG.R | 2390 +++- FIESTA-3.7.0/FIESTA/R/check.popdataP2VEG.R | 2394 +++- FIESTA-3.7.0/FIESTA/R/check.popdataPLT.R | 1995 ++-- FIESTA-3.7.0/FIESTA/R/check.popdataVOL.R | 1586 ++- FIESTA-3.7.0/FIESTA/R/check.rowcol.R | 2424 ++-- FIESTA-3.7.0/FIESTA/R/check.titles.R | 103 FIESTA-3.7.0/FIESTA/R/check.tree.R | 396 FIESTA-3.7.0/FIESTA/R/datLUTclass.R | 145 FIESTA-3.7.0/FIESTA/R/datLUTnm.R | 32 FIESTA-3.7.0/FIESTA/R/datLUTspp.R | 204 FIESTA-3.7.0/FIESTA/R/datPivot.R | 374 FIESTA-3.7.0/FIESTA/R/datSumCond.R | 79 FIESTA-3.7.0/FIESTA/R/datSumTree.R | 3068 ++++-- FIESTA-3.7.0/FIESTA/R/datSumTreeDom.R | 1817 --- FIESTA-3.7.0/FIESTA/R/dbTables.R | 12 FIESTA-3.7.0/FIESTA/R/est.outtabs.R | 320 FIESTA-3.7.0/FIESTA/R/getADJqry.R |only FIESTA-3.7.0/FIESTA/R/getADJwhereqry.R |only FIESTA-3.7.0/FIESTA/R/getGBestimates.R |only FIESTA-3.7.0/FIESTA/R/getMAestimates.R |only FIESTA-3.7.0/FIESTA/R/getSAestimates.R |only FIESTA-3.7.0/FIESTA/R/getpopFilterqry.R |only FIESTA-3.7.0/FIESTA/R/modGBarea.R | 620 - 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Title: Iteratively Reweighted Boosting for Robust Analysis
Description: Fit a predictive model using iteratively reweighted boosting (IRBoost) to minimize robust loss functions within the CC-family (concave-convex). This constitutes an application of iteratively reweighted convex optimization (IRCO), where convex optimization is performed using the functional descent boosting algorithm. IRBoost assigns weights to facilitate outlier identification. Applications include robust generalized linear models and robust accelerated failure time models. Wang (2025) <doi:10.6339/24-JDS1138>.
Author: Zhu Wang [aut, cre]
Maintainer: Zhu Wang <zhuwang@gmail.com>
Diff between irboost versions 0.1-1.5 dated 2024-04-18 and 0.2-1.0 dated 2025-02-04
irboost-0.1-1.5/irboost/vignettes/irbst_code.pdf |only irboost-0.2-1.0/irboost/DESCRIPTION | 10 +++---- irboost-0.2-1.0/irboost/MD5 | 28 +++++++++++++------- irboost-0.2-1.0/irboost/NEWS | 6 ++++ irboost-0.2-1.0/irboost/R/irb.train.R | 2 - irboost-0.2-1.0/irboost/R/irb.train_aft.R | 2 - irboost-0.2-1.0/irboost/R/irboost.R | 2 - irboost-0.2-1.0/irboost/build/vignette.rds |binary irboost-0.2-1.0/irboost/inst/doc/static_irbst.pdf |binary irboost-0.2-1.0/irboost/vignettes/irbst.bib | 29 +++++++++++++-------- irboost-0.2-1.0/irboost/vignettes/irbst_code_files |only 11 files changed, 51 insertions(+), 28 deletions(-)
Title: Statistics Norway's Miscellaneous Tools
Description: Functions used by other packages from Statistics Norway are gathered. General data manipulation functions, algorithms for statistical disclosure control (Langsrud, 2024) <doi:10.1007/978-3-031-69651-0_6> and functions for hierarchical computations by sparse model matrices are included (Langsrud, 2023) <doi:10.32614/RJ-2023-088>.
Author: Oeyvind Langsrud [aut, cre] ,
Daniel Lupp [aut] ,
Bjoern-Helge Mevik [ctb],
Vidar Norstein Klungre [rev] ,
Statistics Norway [cph]
Maintainer: Oeyvind Langsrud <oyl@ssb.no>
Diff between SSBtools versions 1.6.0 dated 2024-12-04 and 1.7.0 dated 2025-02-04
DESCRIPTION | 11 + MD5 | 38 +++--- NAMESPACE | 5 NEWS.md | 44 +++++++ R/Extend0fromModelMatrixInput.R |only R/GaussSuppression.R | 208 +++++++++++++++++++++++++++++++++++-- R/filter_by_variable.R |only R/formula_utils.R | 25 +++- R/hierarchies_as_vars.R | 27 ++++ R/map_hierarchies_to_data.R | 40 ++++++- R/model_aggregate.R | 63 ++++++++++- R/tables_by_formulas.R |only R/total_collapse.R | 2 man/Extend0fromModelMatrixInput.Rd |only man/GaussSuppression.Rd | 24 ++++ man/combine_formulas.Rd | 7 + man/filter_by_variable.Rd |only man/hierarchies_as_vars.Rd | 15 ++ man/map_hierarchies_to_data.Rd | 25 ++++ man/model_aggregate.Rd | 29 ++++- man/tables_by_formulas.Rd |only man/total_collapse.Rd | 2 tests/testthat/test-ModelMatrix.R | 3 23 files changed, 521 insertions(+), 47 deletions(-)
Title: Get and Modify 'oTree' Data
Description: Efficiently manage and process data from 'oTree' experiments.
Import 'oTree' data and clean them by using functions that handle
messy data, dropouts, and other problematic cases. Create IDs,
calculate the time, transfer variables between app data frames, and
delete sensitive information. Review your experimental data prior to
running the experiment and automatically generate a detailed summary
of the variables used in your 'oTree' code. Information on 'oTree' is
found in Chen, D. L., Schonger, M., & Wickens, C. (2016)
<doi:10.1016/j.jbef.2015.12.001>.
Author: Patricia F. Zauchner [aut, trl, cre, cph]
Maintainer: Patricia F. Zauchner <patricia.zauchner@gmx.at>
Diff between gmoTree versions 1.3.0 dated 2024-12-06 and 1.4.0 dated 2025-02-04
gmoTree-1.3.0/gmoTree/tests/testthat/tessts.R |only gmoTree-1.3.0/gmoTree/vignettes/intro.png |only gmoTree-1.3.0/gmoTree/vignettes/title.PNG |only gmoTree-1.4.0/gmoTree/DESCRIPTION | 14 gmoTree-1.4.0/gmoTree/MD5 | 142 gmoTree-1.4.0/gmoTree/NEWS.md | 82 gmoTree-1.4.0/gmoTree/R/apptime.R | 423 +- gmoTree-1.4.0/gmoTree/R/assignv.R | 19 gmoTree-1.4.0/gmoTree/R/assignv_to_aaw.R | 23 gmoTree-1.4.0/gmoTree/R/codebook.R | 237 - gmoTree-1.4.0/gmoTree/R/constant_col.R | 11 gmoTree-1.4.0/gmoTree/R/delete_cases.R | 93 gmoTree-1.4.0/gmoTree/R/delete_dropouts.R | 27 gmoTree-1.4.0/gmoTree/R/delete_duplicate.R | 15 gmoTree-1.4.0/gmoTree/R/delete_plabels.R | 5 gmoTree-1.4.0/gmoTree/R/delete_sessions.R | 47 gmoTree-1.4.0/gmoTree/R/extime.R | 87 gmoTree-1.4.0/gmoTree/R/import_otree.R | 141 gmoTree-1.4.0/gmoTree/R/make_ids.R | 76 gmoTree-1.4.0/gmoTree/R/messy_chat.R | 3 gmoTree-1.4.0/gmoTree/R/messy_time.R | 3 gmoTree-1.4.0/gmoTree/R/pagesec.R | 7 gmoTree-1.4.0/gmoTree/R/show_constant.R | 19 gmoTree-1.4.0/gmoTree/R/show_dropouts.R | 12 gmoTree-1.4.0/gmoTree/README.md | 14 gmoTree-1.4.0/gmoTree/inst/CITATION | 4 gmoTree-1.4.0/gmoTree/inst/doc/codebook.R | 11 gmoTree-1.4.0/gmoTree/inst/doc/codebook.Rmd | 67 gmoTree-1.4.0/gmoTree/inst/doc/codebook.html | 204 - gmoTree-1.4.0/gmoTree/inst/doc/intro_to_gmoTree.R | 2 gmoTree-1.4.0/gmoTree/inst/doc/intro_to_gmoTree.Rmd | 21 gmoTree-1.4.0/gmoTree/inst/doc/intro_to_gmoTree.html | 55 gmoTree-1.4.0/gmoTree/inst/extdata/ocode_z/settings.py | 2 gmoTree-1.4.0/gmoTree/inst/pkgdown.yml |only gmoTree-1.4.0/gmoTree/inst/rmd/codebook.Rmd | 259 - gmoTree-1.4.0/gmoTree/man/apptime.Rd | 15 gmoTree-1.4.0/gmoTree/man/assignv.Rd | 10 gmoTree-1.4.0/gmoTree/man/assignv_to_aaw.Rd | 14 gmoTree-1.4.0/gmoTree/man/codebook.Rd | 87 gmoTree-1.4.0/gmoTree/man/delete_cases.Rd | 80 gmoTree-1.4.0/gmoTree/man/delete_dropouts.Rd | 42 gmoTree-1.4.0/gmoTree/man/delete_duplicate.Rd | 15 gmoTree-1.4.0/gmoTree/man/delete_plabels.Rd | 6 gmoTree-1.4.0/gmoTree/man/delete_sessions.Rd | 49 gmoTree-1.4.0/gmoTree/man/extime.Rd | 38 gmoTree-1.4.0/gmoTree/man/import_otree.Rd | 28 gmoTree-1.4.0/gmoTree/man/make_ids.Rd | 15 gmoTree-1.4.0/gmoTree/man/messy_chat.Rd | 4 gmoTree-1.4.0/gmoTree/man/messy_time.Rd | 4 gmoTree-1.4.0/gmoTree/man/pagesec.Rd | 6 gmoTree-1.4.0/gmoTree/man/show_constant.Rd | 16 gmoTree-1.4.0/gmoTree/man/show_dropouts.Rd | 30 gmoTree-1.4.0/gmoTree/tests/testthat/testdata/exp_cust_data_rename |only gmoTree-1.4.0/gmoTree/tests/testthat/testdata/exp_data_2.1.0.w |only gmoTree-1.4.0/gmoTree/tests/testthat/testdata/exp_data_5.4.0/custexp_dictator_2025-01-10.csv |only gmoTree-1.4.0/gmoTree/tests/testthat/testdata/exp_data_5.4.0subapp/custexp_dictator_2025-01-10.csv |only gmoTree-1.4.0/gmoTree/tests/testthat/testdata/ocode_f1/MIG1/models.py | 10 gmoTree-1.4.0/gmoTree/tests/testthat/testdata/ocode_f2/MIG1/models.py | 10 gmoTree-1.4.0/gmoTree/tests/testthat/testdata/ocode_f3/MIG1/models.py | 6 gmoTree-1.4.0/gmoTree/tests/testthat/testdata/ocode_f4/MIG1/models.py | 14 gmoTree-1.4.0/gmoTree/tests/testthat/testdata/ocode_f5/MIG1/models.py | 6 gmoTree-1.4.0/gmoTree/tests/testthat/testdata/ocode_f6 |only gmoTree-1.4.0/gmoTree/tests/testthat/testdata/ocode_new4 |only gmoTree-1.4.0/gmoTree/tests/testthat/testdata/ocode_y1/test/models.py | 5 gmoTree-1.4.0/gmoTree/tests/testthat/testdata/ocode_z2/rankaversion/models.py | 13 gmoTree-1.4.0/gmoTree/tests/testthat/testdata/ocode_z3/rankaversion/models.py | 1 gmoTree-1.4.0/gmoTree/tests/testthat/testdata/ocode_z3/settings.py | 2 gmoTree-1.4.0/gmoTree/tests/testthat/tests.R |only gmoTree-1.4.0/gmoTree/tests/testthat/tests_codebook.R | 1667 +++++----- gmoTree-1.4.0/gmoTree/vignettes/codebook.Rmd | 67 gmoTree-1.4.0/gmoTree/vignettes/intro_to_gmoTree.Rmd | 21 gmoTree-1.4.0/gmoTree/vignettes/title.png |only 72 files changed, 2421 insertions(+), 1985 deletions(-)
Title: Set Axis Break for 'ggplot2'
Description: An implementation of scale functions for setting axis breaks of a 'gg' plot (S Xu (2021) <doi:10.3389/fgene.2021.774846>).
Author: Guangchuang Yu [aut, cre, cph]
,
Shuangbin Xu [aut]
Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>
Diff between ggbreak versions 0.1.3 dated 2025-01-08 and 0.1.4 dated 2025-02-04
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ R/method-ggplot-add.R | 1 + R/scales.R | 37 ++----------------------------------- R/utilities.R | 2 ++ R/zzz.R | 16 ++++++++++++++++ inst/doc/ggbreak.html | 38 +++++++++++++++++++------------------- 7 files changed, 49 insertions(+), 63 deletions(-)
Title: Perform Recursive Computations
Description: Mass rollup for a Bill of Materials is an example of a class of computations in which elements are arranged in a tree structure and some property of each element is a computed function of the corresponding values of its child elements. Leaf elements, i.e., those with no children, have values assigned. In many cases, the combining function is simple arithmetic sum; in other cases (e.g., mass properties), the combiner may involve other information such as the geometric relationship between parent and child, or statistical relations such as root-sum-of-squares (RSS). This package implements a general function for such problems. It is adapted to specific recursive computations by functional programming techniques; the caller passes a function as the update parameter to rollup() (or, at a lower level, passes functions as the get, set, combine, and override parameters to update_prop()) at runtime to specify the desired operations. The implementation relies on graph-theoretic algorithms from [...truncated...]
Author: James Steven Jenkins [aut, cre, cph]
Maintainer: James Steven Jenkins <sjenkins@studioj.us>
Diff between rollupTree versions 0.1.0 dated 2025-01-20 and 0.2.0 dated 2025-02-04
DESCRIPTION | 6 - MD5 | 58 +++++++++------ NAMESPACE | 1 NEWS.md | 11 +++ R/fault_table.R |only R/fault_tree.R |only R/rollup.R | 36 +++++++++ R/update_prop.R | 118 ++++++++++++++++---------------- R/wbs_table.R | 2 README.md | 1 data/fault_table.rda |only data/fault_tree.rda |only inst/doc/rollupTree.R | 64 ++++++++++++++++- inst/doc/rollupTree.Rmd | 96 ++++++++++++++++++++++++-- inst/doc/rollupTree.html | 157 +++++++++++++++++++++++++++++++++++-------- man/create_rollup_tree.Rd |only man/df_get_by_id.Rd | 6 - man/df_get_by_key.Rd | 10 +- man/df_get_ids.Rd | 4 - man/df_get_keys.Rd | 4 - man/df_set_by_id.Rd | 10 +- man/df_set_by_key.Rd | 10 +- man/fault_table.Rd |only man/fault_tree.Rd |only man/update_df_prop_by_id.Rd | 14 +-- man/update_df_prop_by_key.Rd | 18 ++-- man/update_prop.Rd | 18 ++-- man/validate_df_by_id.Rd | 12 +-- man/validate_df_by_key.Rd | 12 +-- man/wbs_table.Rd | 4 - tests/testthat/test-rollup.R | 20 +++++ vignettes/fta-example.jpg |only vignettes/references.bib | 8 ++ vignettes/rollupTree.Rmd | 96 ++++++++++++++++++++++++-- 34 files changed, 604 insertions(+), 192 deletions(-)
Title: Joint Modelling of Multivariate Longitudinal Data and
Time-to-Event Outcomes
Description: Fits the joint model proposed by Henderson and colleagues (2000)
<doi:10.1093/biostatistics/1.4.465>, but extended to the case of multiple
continuous longitudinal measures. The time-to-event data is modelled using a
Cox proportional hazards regression model with time-varying covariates. The
multiple longitudinal outcomes are modelled using a multivariate version of the
Laird and Ware linear mixed model. The association is captured by a multivariate
latent Gaussian process. The model is estimated using a Monte Carlo Expectation
Maximization algorithm. This project was funded by the Medical Research Council
(Grant number MR/M013227/1).
Author: Graeme L. Hickey [cre, aut] ,
Pete Philipson [aut] ,
Andrea Jorgensen [ctb] ,
Ruwanthi Kolamunnage-Dona [aut]
,
Paula Williamson [ctb] ,
Dimitris Rizopoulos [ctb, dtc] ,
Alessandro Gasparini [aut] ,
Medical Research Council [fnd]
Maintainer: Graeme L. Hickey <graemeleehickey@gmail.com>
Diff between joineRML versions 0.4.6 dated 2023-01-19 and 0.4.7 dated 2025-02-04
joineRML-0.4.6/joineRML/src/init.c |only joineRML-0.4.7/joineRML/DESCRIPTION | 10 joineRML-0.4.7/joineRML/MD5 | 77 +- joineRML-0.4.7/joineRML/NAMESPACE | 4 joineRML-0.4.7/joineRML/NEWS.md | 28 joineRML-0.4.7/joineRML/R/bootSE.R | 11 joineRML-0.4.7/joineRML/R/confint.mjoint.R | 2 joineRML-0.4.7/joineRML/R/fixef.mjoint.R | 2 joineRML-0.4.7/joineRML/R/joineRML.R | 16 joineRML-0.4.7/joineRML/R/mjoint.R | 2 joineRML-0.4.7/joineRML/R/plot.mjoint.R | 2 joineRML-0.4.7/joineRML/R/plot.ranef.mjoint.R | 8 joineRML-0.4.7/joineRML/R/tidiers.R | 18 joineRML-0.4.7/joineRML/R/vcov.mjoint.R | 8 joineRML-0.4.7/joineRML/README.md | 14 joineRML-0.4.7/joineRML/build/partial.rdb |only joineRML-0.4.7/joineRML/build/vignette.rds |binary joineRML-0.4.7/joineRML/inst/CITATION | 6 joineRML-0.4.7/joineRML/inst/doc/joineRML-tidy.R | 26 joineRML-0.4.7/joineRML/inst/doc/joineRML-tidy.Rmd | 33 joineRML-0.4.7/joineRML/inst/doc/joineRML-tidy.html | 259 +++---- joineRML-0.4.7/joineRML/inst/doc/joineRML.R | 43 - joineRML-0.4.7/joineRML/inst/doc/joineRML.Rmd | 46 - joineRML-0.4.7/joineRML/inst/doc/joineRML.html | 731 ++++++++++---------- joineRML-0.4.7/joineRML/inst/doc/technical.pdf |binary joineRML-0.4.7/joineRML/man/bootSE.Rd | 4 joineRML-0.4.7/joineRML/man/confint.mjoint.Rd | 2 joineRML-0.4.7/joineRML/man/fixef.mjoint.Rd | 2 joineRML-0.4.7/joineRML/man/joineRML-package.Rd |only joineRML-0.4.7/joineRML/man/joineRML.Rd | 1 joineRML-0.4.7/joineRML/man/mjoint.Rd | 2 joineRML-0.4.7/joineRML/man/mjoint_tidiers.Rd | 7 joineRML-0.4.7/joineRML/man/plot.mjoint.Rd | 2 joineRML-0.4.7/joineRML/man/plot.ranef.mjoint.Rd | 4 joineRML-0.4.7/joineRML/man/vcov.mjoint.Rd | 8 joineRML-0.4.7/joineRML/src/Makevars | 1 joineRML-0.4.7/joineRML/src/Makevars.win | 1 joineRML-0.4.7/joineRML/src/RcppExports.cpp | 16 joineRML-0.4.7/joineRML/tests/testthat/Rplots.pdf |binary joineRML-0.4.7/joineRML/vignettes/joineRML-tidy.Rmd | 33 joineRML-0.4.7/joineRML/vignettes/joineRML.Rmd | 46 - 41 files changed, 826 insertions(+), 649 deletions(-)
Title: Spatial and Spatio-Temporal Geostatistical Modelling, Prediction
and Simulation
Description: Variogram modelling; simple, ordinary and universal point or block (co)kriging; spatio-temporal kriging; sequential Gaussian or indicator (co)simulation; variogram and variogram map plotting utility functions; supports sf and stars.
Author: Edzer Pebesma [aut, cre] ,
Benedikt Graeler [aut]
Maintainer: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Diff between gstat versions 2.1-2 dated 2024-09-05 and 2.1-3 dated 2025-02-04
DESCRIPTION | 9 - MD5 | 56 ++++----- R/predict.gstat.R | 2 build/vignette.rds |binary data/DE_RB_2005.rda |binary data/coalash.rda |binary data/fulmar.rda |binary data/jura.rda |binary data/meuse.all.rda |binary data/meuse.alt.rda |binary data/ncp.grid.rda |binary data/oxford.rda |binary data/pcb.rda |binary data/sic2004.rda |binary data/sic97.rda |binary data/tull.rda |binary data/vv.rda |binary data/walker.rda |binary data/wind.rda |binary inst/doc/gstat.pdf |binary inst/doc/prs.pdf |binary inst/doc/spatio-temporal-kriging.pdf |binary inst/doc/st.pdf |binary man/sic2004.Rd | 4 man/sic97.Rd | 5 man/walker.Rd | 7 - tests/cv.Rout.save | 204 +++++++++++++++++------------------ tests/cv3d.Rout.save | 96 ++++++++-------- tests/stars.Rout.save | 84 +++++++------- 29 files changed, 229 insertions(+), 238 deletions(-)
Title: Forensic Bayesian Networks
Description: Open-source package for computing likelihood ratios in kinship testing and human identification cases. It has the core function of the software GENis, developed by Fundación Sadosky. It relies on a Bayesian Networks framework and is particularly well suited to efficiently perform large-size queries against databases of missing individuals.
Author: Franco Marsico [aut, cre],
Ariel Chernomoretz [aut]
Maintainer: Franco Marsico <franco.lmarsico@gmail.com>
Diff between fbnet versions 1.0.3 dated 2023-07-01 and 1.0.4 dated 2025-02-04
fbnet-1.0.3/fbnet/R/FamiliasLocus.R |only fbnet-1.0.3/fbnet/R/FamiliasPedigree.R |only fbnet-1.0.3/fbnet/R/convertPedformat.R |only fbnet-1.0.3/fbnet/R/preparePed.R |only fbnet-1.0.3/fbnet/man/FamiliasLocus.Rd |only fbnet-1.0.3/fbnet/man/FamiliasPedigree.Rd |only fbnet-1.0.3/fbnet/man/convertPedformat.Rd |only fbnet-1.0.3/fbnet/man/preparePed.Rd |only fbnet-1.0.4/fbnet/DESCRIPTION | 17 ++--- fbnet-1.0.4/fbnet/MD5 | 92 ++++++++++++++-------------- fbnet-1.0.4/fbnet/NAMESPACE | 6 - fbnet-1.0.4/fbnet/R/bnet.R |only fbnet-1.0.4/fbnet/R/buildBN.R | 4 - fbnet-1.0.4/fbnet/R/buildCPTs.R | 5 - fbnet-1.0.4/fbnet/R/evidencePrunning.R | 1 fbnet-1.0.4/fbnet/R/factorHeteroFounders.R | 1 fbnet-1.0.4/fbnet/R/fbnet.R | 1 fbnet-1.0.4/fbnet/R/getGenotypeTables.R | 1 fbnet-1.0.4/fbnet/R/getLocusCPT.R | 6 - fbnet-1.0.4/fbnet/R/getMAP.R | 1 fbnet-1.0.4/fbnet/R/getQSetRMP.R | 1 fbnet-1.0.4/fbnet/R/getValuesOut.R | 1 fbnet-1.0.4/fbnet/R/imposeEvidence.R | 1 fbnet-1.0.4/fbnet/R/initBN.R | 18 ++++- fbnet-1.0.4/fbnet/R/initBN.fromPed.R | 8 -- fbnet-1.0.4/fbnet/R/initBN.fromVars.R | 13 --- fbnet-1.0.4/fbnet/R/minOrdering.R | 1 fbnet-1.0.4/fbnet/R/pbn.R |only fbnet-1.0.4/fbnet/R/prodFactor.R | 1 fbnet-1.0.4/fbnet/R/pruneNodes.R | 1 fbnet-1.0.4/fbnet/R/removeEvidenceFromPed.R | 1 fbnet-1.0.4/fbnet/R/reportLR.R | 1 fbnet-1.0.4/fbnet/R/reportPQ.R | 1 fbnet-1.0.4/fbnet/R/reverseSplit.R | 1 fbnet-1.0.4/fbnet/R/setOrdering.R | 1 fbnet-1.0.4/fbnet/R/stateRemoval.R | 1 fbnet-1.0.4/fbnet/R/stateRemoval2.R | 1 fbnet-1.0.4/fbnet/R/stateRemovalSubnucs.R | 1 fbnet-1.0.4/fbnet/R/sumFactor.R | 1 fbnet-1.0.4/fbnet/R/velim.bn.R | 6 - fbnet-1.0.4/fbnet/README.md | 13 --- fbnet-1.0.4/fbnet/build/partial.rdb |binary fbnet-1.0.4/fbnet/data/bnet.rda |only fbnet-1.0.4/fbnet/data/pbn.rda |only fbnet-1.0.4/fbnet/man/bnet.Rd |only fbnet-1.0.4/fbnet/man/buildBN.Rd | 4 - fbnet-1.0.4/fbnet/man/buildCPTs.Rd | 5 - fbnet-1.0.4/fbnet/man/fbnet.Rd | 19 +++++ fbnet-1.0.4/fbnet/man/figures |only fbnet-1.0.4/fbnet/man/getLocusCPT.Rd | 6 - fbnet-1.0.4/fbnet/man/initBN.Rd | 15 ++++ fbnet-1.0.4/fbnet/man/pbn.Rd |only fbnet-1.0.4/fbnet/man/velim.bn.Rd | 6 - 53 files changed, 109 insertions(+), 154 deletions(-)
Title: SAGA Geoprocessing and Terrain Analysis
Description: Provides access to geocomputing and terrain analysis
functions of the geographical information system (GIS) 'SAGA' (System
for Automated Geoscientific Analyses) from within R by running the
command line version of SAGA. This package furthermore provides
several R functions for handling ASCII grids, including a flexible
framework for applying local functions (including predict methods of
fitted models) and focal functions to multiple grids. SAGA GIS is
available under GPL-2 / LGPL-2 licences from
<https://sourceforge.net/projects/saga-gis/>.
Author: Alexander Brenning [aut, cre] ,
Donovan Bangs [aut],
Marc Becker [aut],
Patrick Schratz [ctb] ,
Fabian Polakowski [ctb]
Maintainer: Alexander Brenning <alexander.brenning@uni-jena.de>
Diff between RSAGA versions 1.4.0 dated 2022-12-09 and 1.4.2 dated 2025-02-04
DESCRIPTION | 66 ++-- MD5 | 142 +++++----- R/RSAGA-core.R | 57 ++-- R/RSAGA-modules.R | 460 ++++++++++++++++++--------------- R/RSAGA-package.R | 7 R/RSAGA-utils.R | 10 R/dem.R |only R/gridtools.R | 24 + R/landslides.R | 57 +--- R/study_area.R |only build/vignette.rds |binary data/dem.rda |only data/landslides.rda |binary data/study_area.rda |only inst/doc/RSAGA.R | 194 +++++++------ inst/doc/RSAGA.Rmd | 10 inst/doc/RSAGA.html | 257 +++++++++--------- man/RSAGA-package.Rd | 134 +++++---- man/centervalue.Rd | 53 ++- man/create.variable.name.Rd | 52 ++- man/dem.Rd |only man/focal.function.Rd | 292 ++++++++++---------- man/grid.predict.Rd | 174 ++++++------ man/grid.to.xyz.Rd | 68 ++-- man/landslides.Rd | 159 +++++------ man/match.arg.ext.Rd | 138 ++++----- man/multi.focal.function.Rd | 364 +++++++++++++------------- man/pick.from.points.Rd | 447 ++++++++++++++++---------------- man/read.ascii.grid.Rd | 262 +++++++++--------- man/relative.position.Rd | 84 +++--- man/resid.median.Rd | 78 ++--- man/rsaga.add.grid.values.to.points.Rd | 87 +++--- man/rsaga.close.gaps.Rd | 110 +++---- man/rsaga.contour.Rd | 96 +++--- man/rsaga.copy.sgrd.Rd | 53 ++- man/rsaga.env.Rd | 202 +++++++------- man/rsaga.esri.to.sgrd.Rd | 84 +++--- man/rsaga.esri.wrapper.Rd | 158 +++++------ man/rsaga.fill.sinks.Rd | 132 ++++----- man/rsaga.filter.gauss.Rd | 84 +++--- man/rsaga.filter.simple.Rd | 96 +++--- man/rsaga.geoprocessor.Rd | 216 +++++++-------- man/rsaga.get.modules.Rd | 204 +++++++------- man/rsaga.get.modules.path.Rd | 43 +-- man/rsaga.get.usage.Rd | 90 +++--- man/rsaga.get.version.Rd | 80 ++--- man/rsaga.grid.calculus.Rd | 188 ++++++------- man/rsaga.grid.to.points.Rd | 129 ++++----- man/rsaga.hillshade.Rd | 112 ++++---- man/rsaga.html.help.Rd | 91 +++--- man/rsaga.import.gdal.Rd | 115 ++++---- man/rsaga.insolation.Rd | 210 +++++++-------- man/rsaga.intersect.polygons.Rd | 112 ++++---- man/rsaga.inverse.distance.Rd | 197 +++++++------- man/rsaga.lib.prefix.Rd | 70 ++--- man/rsaga.local.morphometry.Rd | 232 ++++++++-------- man/rsaga.parallel.processing.Rd | 238 ++++++++--------- man/rsaga.pisr.Rd | 295 ++++++++++----------- man/rsaga.pisr2.Rd | 268 +++++++++---------- man/rsaga.set.env.Rd | 71 ++--- man/rsaga.sgrd.to.esri.Rd | 138 ++++----- man/rsaga.sink.removal.Rd | 84 +++--- man/rsaga.sink.route.Rd | 80 ++--- man/rsaga.slope.asp.curv.Rd | 306 ++++++++++----------- man/rsaga.solar.radiation.Rd | 189 ++++++------- man/rsaga.target.Rd | 135 ++++----- man/rsaga.topdown.processing.Rd | 272 +++++++++---------- man/rsaga.union.polygons.Rd | 116 ++++---- man/rsaga.wetness.index.Rd | 164 +++++------ man/set.file.extension.Rd | 74 ++--- man/study_area.Rd |only man/wind.shelter.Rd | 140 +++++----- tests/testthat/test-core.R | 17 + tests/testthat/test-modules.R | 50 +++ vignettes/RSAGA.Rmd | 10 75 files changed, 4785 insertions(+), 4642 deletions(-)
Title: Information Theory Tools for Forensic Analysis
Description: The 'forensIT' package is a comprehensive statistical toolkit tailored for handling missing person cases. By leveraging information theory metrics, it enables accurate assessment of kinship, particularly when limited genetic evidence is available. With a focus on optimizing statistical power, 'forensIT' empowers investigators to effectively prioritize family members, enhancing the reliability and efficiency of missing person investigations.
Author: Franco Marsico [aut, cre],
Ariel Chernomoretz [aut]
Maintainer: Franco Marsico <franco.lmarsico@gmail.com>
Diff between forensIT versions 1.0.0 dated 2023-06-22 and 1.1.1 dated 2025-02-04
forensIT-1.0.0/forensIT/R/convertPed.R |only forensIT-1.0.0/forensIT/man/convertPed.Rd |only forensIT-1.1.1/forensIT/DESCRIPTION | 12 +- forensIT-1.1.1/forensIT/MD5 | 16 +-- forensIT-1.1.1/forensIT/NAMESPACE | 2 forensIT-1.1.1/forensIT/R/run-it.R | 3 forensIT-1.1.1/forensIT/R/simMinimalEnsemble.R | 4 forensIT-1.1.1/forensIT/R/simTestIDMarkers.R | 1 forensIT-1.1.1/forensIT/README.md | 104 ++++++++++--------------- forensIT-1.1.1/forensIT/man/forensIT.Rd | 10 ++ 10 files changed, 69 insertions(+), 83 deletions(-)
Title: Miscellaneous Functions for Panel Data, Quantiles, and Printing
Results
Description: These are miscellaneous functions for working with panel data, quantiles, and printing results. For panel data, the package includes functions for making a panel data balanced (that is, dropping missing individuals that have missing observations in any time period), converting id numbers to row numbers, and to treat repeated cross sections as panel data under the assumption of rank invariance. For quantiles, there are functions to make distribution functions from a set of data points (this is particularly useful when a distribution function is created in several steps), to combine distribution functions based on some external weights, and to invert distribution functions. Finally, there are several other miscellaneous functions for obtaining weighted means, weighted distribution functions, and weighted quantiles; to generate summary statistics and their differences for two groups; and to add or drop covariates from formulas.
Author: Brantly Callaway [aut, cre]
Maintainer: Brantly Callaway <brantly.callaway@uga.edu>
Diff between BMisc versions 1.4.7 dated 2025-01-10 and 1.4.8 dated 2025-02-04
BMisc-1.4.7/BMisc/man/compareSingleBinary.Rd |only BMisc-1.4.7/BMisc/man/getWeightedQuantile.Rd |only BMisc-1.4.8/BMisc/DESCRIPTION | 9 BMisc-1.4.8/BMisc/MD5 | 65 ++- BMisc-1.4.8/BMisc/NAMESPACE | 19 BMisc-1.4.8/BMisc/NEWS.md | 8 BMisc-1.4.8/BMisc/R/BMisc.R | 457 ++++++++++++++++++----- BMisc-1.4.8/BMisc/README.md | 33 - BMisc-1.4.8/BMisc/inst |only BMisc-1.4.8/BMisc/man/BMisc.Rd | 1 BMisc-1.4.8/BMisc/man/addCovToFormla.Rd | 21 - BMisc-1.4.8/BMisc/man/add_cov_to_formula.Rd |only BMisc-1.4.8/BMisc/man/blockBootSample.Rd | 28 - BMisc-1.4.8/BMisc/man/block_boot_sample.Rd |only BMisc-1.4.8/BMisc/man/combineDfs.Rd | 26 - BMisc-1.4.8/BMisc/man/combine_ecdfs.Rd |only BMisc-1.4.8/BMisc/man/compareBinary.Rd | 10 BMisc-1.4.8/BMisc/man/compare_binary.Rd |only BMisc-1.4.8/BMisc/man/compare_binary_inner.Rd |only BMisc-1.4.8/BMisc/man/dropCovFromFormla.Rd | 19 BMisc-1.4.8/BMisc/man/drop_cov_from_formula.Rd |only BMisc-1.4.8/BMisc/man/getListElement.Rd | 17 BMisc-1.4.8/BMisc/man/getWeightedDf.Rd | 10 BMisc-1.4.8/BMisc/man/getWeightedMean.Rd | 9 BMisc-1.4.8/BMisc/man/getWeightedQuantiles.Rd | 10 BMisc-1.4.8/BMisc/man/get_list_element.Rd |only BMisc-1.4.8/BMisc/man/invertEcdf.Rd | 10 BMisc-1.4.8/BMisc/man/invert_ecdf.Rd |only BMisc-1.4.8/BMisc/man/lhs.vars.Rd | 17 BMisc-1.4.8/BMisc/man/lhs_vars.Rd |only BMisc-1.4.8/BMisc/man/makeBalancedPanel.Rd | 22 - BMisc-1.4.8/BMisc/man/makeDist.Rd | 19 BMisc-1.4.8/BMisc/man/make_balanced_panel.Rd |only BMisc-1.4.8/BMisc/man/make_dist.Rd |only BMisc-1.4.8/BMisc/man/rhs.Rd | 4 BMisc-1.4.8/BMisc/man/rhs.vars.Rd | 18 BMisc-1.4.8/BMisc/man/rhs_vars.Rd |only BMisc-1.4.8/BMisc/man/weighted.checkfun.Rd | 9 BMisc-1.4.8/BMisc/man/weighted_checkfun.Rd |only BMisc-1.4.8/BMisc/man/weighted_combine_list.Rd |only BMisc-1.4.8/BMisc/man/weighted_ecdf.Rd |only BMisc-1.4.8/BMisc/man/weighted_mean.Rd |only BMisc-1.4.8/BMisc/man/weighted_quantile.Rd |only BMisc-1.4.8/BMisc/man/weighted_quantile_inner.Rd |only 44 files changed, 533 insertions(+), 308 deletions(-)
Title: Stochastic Search Inconsistency Factor Selection
Description: Evaluating the consistency assumption of Network Meta-Analysis both globally and locally in the Bayesian framework. Inconsistencies are located by applying Bayesian variable selection to the inconsistency factors. The implementation of the method is described by Seitidis et al. (2023) <doi:10.1002/sim.9891>.
Author: Georgios Seitidis [aut, cre] ,
Stavros Nikolakopoulos [aut] ,
Ioannis Ntzoufras [aut] ,
Dimitris Mavridis [aut]
Maintainer: Georgios Seitidis <g.seitidis@uoi.gr>
Diff between ssifs versions 1.0.2 dated 2023-05-12 and 1.0.4 dated 2025-02-04
DESCRIPTION | 15 ++++++++------- MD5 | 26 +++++++++++++------------- NAMESPACE | 2 ++ NEWS.md | 2 ++ R/higgdes.R | 6 ++++-- R/smokingcessation.R | 3 ++- R/ssifs.R | 8 ++++---- README.md | 11 +++++++++-- inst/doc/An_introduction_to_ssifs.Rmd | 2 +- inst/doc/An_introduction_to_ssifs.html | 8 +++++++- man/smokingcessation.Rd | 2 +- man/ssifs.Rd | 8 ++++---- vignettes/An_introduction_to_ssifs.Rmd | 2 +- vignettes/references.bib | 11 +++++++++++ 14 files changed, 69 insertions(+), 37 deletions(-)
Title: Network Meta-Analysis using Frequentist Methods
Description: A comprehensive set of functions providing frequentist methods for network meta-analysis (Balduzzi et al., 2023) <doi:10.18637/jss.v106.i02> and supporting Schwarzer et al. (2015) <doi:10.1007/978-3-319-21416-0>, Chapter 8 "Network Meta-Analysis":
- frequentist network meta-analysis following Rücker (2012) <doi:10.1002/jrsm.1058>;
- additive network meta-analysis for combinations of treatments (Rücker et al., 2020) <doi:10.1002/bimj.201800167>;
- network meta-analysis of binary data using the Mantel-Haenszel or non-central hypergeometric distribution method (Efthimiou et al., 2019) <doi:10.1002/sim.8158>, or penalised logistic regression (Evrenoglou et al., 2022) <doi:10.1002/sim.9562>;
- rankograms and ranking of treatments by the Surface under the cumulative ranking curve (SUCRA) (Salanti et al., 2013) <doi:10.1016/j.jclinepi.2010.03.016>;
- ranking of treatments using P-scores (frequentist analogue of SUCRAs without resampling) according to [...truncated...]
Author: Gerta Ruecker [aut] ,
Ulrike Krahn [aut],
Jochem Koenig [aut] ,
Orestis Efthimiou [aut] ,
Annabel Davies [aut] ,
Theodoros Papakonstantinou [aut]
,
Theodoros Evrenoglou [ctb] ,
Krzysztof Ciomek [ctb] ,
Guido Schwarzer [aut, cre]
Maintainer: Guido Schwarzer <guido.schwarzer@uniklinik-freiburg.de>
Diff between netmeta versions 3.0-2 dated 2025-01-22 and 3.1-0 dated 2025-02-04
DESCRIPTION | 26 ++++++---- LICENSE |only MD5 | 43 +++++++++-------- NAMESPACE | 48 +++++++++++++++++++ NEWS.md | 56 +++++++++++++++++++--- R/contribution.matrix.R | 59 ++++++++++------------- R/hasse-internal.R |only R/hasse.R | 63 +++++++++++------------- R/netconnection.R | 16 +++++- R/netcontrib.R | 21 +++----- R/netleague.R | 8 +-- R/netmeta-package.R | 41 ++++++++++------ R/netmeta.R | 58 +++++++++++++---------- R/netmetabin.R | 121 +++++++++++++++++++++++------------------------- R/netposet.R | 17 ++---- R/plot.netposet.R | 3 - inst/MIT_LICENSE |only inst/doc/netmeta.pdf |binary man/hasse.netposet.Rd | 30 +++++++++-- man/netcontrib.Rd | 19 +++---- man/netleague.Rd | 8 +-- man/netmetabin.Rd | 3 - man/netposet.Rd | 15 +---- man/plot.netposet.Rd | 3 - 24 files changed, 388 insertions(+), 270 deletions(-)
Title: Constructing Hierarchical Voronoi Tessellations and Overlay
Heatmaps for Data Analysis
Description: Facilitates building topology preserving maps for data analysis.
Author: Zubin Dowlaty [aut],
Mu Sigma, Inc. [cre]
Maintainer: "Mu Sigma, Inc." <ird.experiencelab@mu-sigma.com>
Diff between HVT versions 24.9.1 dated 2024-09-11 and 25.2.1 dated 2025-02-04
HVT-24.9.1/HVT/man/getCellId.Rd |only HVT-24.9.1/HVT/man/hvq.Rd |only HVT-24.9.1/HVT/man/madPlot.Rd |only HVT-24.9.1/HVT/vignettes/scoreLayeredHVT_function.png |only HVT-24.9.1/HVT/vignettes/torus2.png |only HVT-25.2.1/HVT/DESCRIPTION | 29 HVT-25.2.1/HVT/MD5 | 110 +- HVT-25.2.1/HVT/NAMESPACE | 12 HVT-25.2.1/HVT/R/clustHVT.R | 46 - HVT-25.2.1/HVT/R/clusterPlot.R | 187 ++-- HVT-25.2.1/HVT/R/diagPlot.R | 5 HVT-25.2.1/HVT/R/diagSuggestion.R | 2 HVT-25.2.1/HVT/R/displayTable.R | 127 -- HVT-25.2.1/HVT/R/edaPlots.R | 203 +++- HVT-25.2.1/HVT/R/getCellId.R | 20 HVT-25.2.1/HVT/R/getOptimalCentroids.R | 1 HVT-25.2.1/HVT/R/getTransitionProbability.R | 113 +- HVT-25.2.1/HVT/R/hvq.R | 63 - HVT-25.2.1/HVT/R/madPlot.R | 53 - HVT-25.2.1/HVT/R/msm.R |only HVT-25.2.1/HVT/R/msm_plots.R |only HVT-25.2.1/HVT/R/plotAnimatedFlowmap.R | 723 ++++++++-------- HVT-25.2.1/HVT/R/plotHVT.R | 204 ++-- HVT-25.2.1/HVT/R/plotModelDiagnostics.R | 1 HVT-25.2.1/HVT/R/plotNovelCells.R | 4 HVT-25.2.1/HVT/R/plotQuantErrorHistogram.R | 3 HVT-25.2.1/HVT/R/plotStateTransition.R | 226 ++++- HVT-25.2.1/HVT/R/plotZscore.R |only HVT-25.2.1/HVT/R/reconcileTransitionProbability.R | 20 HVT-25.2.1/HVT/R/removeNovelty.R | 2 HVT-25.2.1/HVT/R/scoreHVT.R | 48 - HVT-25.2.1/HVT/R/scoreLayeredHVT.R | 11 HVT-25.2.1/HVT/R/summary.R |only HVT-25.2.1/HVT/R/trainHVT.R | 52 - HVT-25.2.1/HVT/README.md | 118 +- HVT-25.2.1/HVT/build/vignette.rds |binary HVT-25.2.1/HVT/inst/doc/HVT.R | 42 HVT-25.2.1/HVT/inst/doc/HVT.Rmd | 90 +- HVT-25.2.1/HVT/inst/doc/HVT.html | 769 ++++++++++++++---- HVT-25.2.1/HVT/man/clustHVT.Rd | 20 HVT-25.2.1/HVT/man/displayTable.Rd | 46 - HVT-25.2.1/HVT/man/edaPlots.Rd | 28 HVT-25.2.1/HVT/man/getTransitionProbability.Rd | 31 HVT-25.2.1/HVT/man/msm.Rd |only HVT-25.2.1/HVT/man/plotAnimatedFlowmap.Rd | 13 HVT-25.2.1/HVT/man/plotHVT.Rd | 65 - HVT-25.2.1/HVT/man/plotNovelCells.Rd | 2 HVT-25.2.1/HVT/man/plotStateTransition.Rd | 16 HVT-25.2.1/HVT/man/plotZscore.Rd |only HVT-25.2.1/HVT/man/reconcileTransitionProbability.Rd | 7 HVT-25.2.1/HVT/man/scoreHVT.Rd | 3 HVT-25.2.1/HVT/man/summary.Rd |only HVT-25.2.1/HVT/man/trainHVT.Rd | 11 HVT-25.2.1/HVT/vignettes/HVT.Rmd | 90 +- HVT-25.2.1/HVT/vignettes/pngs |only 55 files changed, 2188 insertions(+), 1428 deletions(-)
Title: Robust Bayesian Meta-Analyses
Description: A framework for estimating ensembles of meta-analytic and meta-regression models
(assuming either presence or absence of the effect, heterogeneity,
publication bias, and moderators). The RoBMA framework uses Bayesian model-averaging to
combine the competing meta-analytic models into a model ensemble, weights
the posterior parameter distributions based on posterior model probabilities
and uses Bayes factors to test for the presence or absence of the
individual components (e.g., effect vs. no effect; Bartoš et al., 2022,
<doi:10.1002/jrsm.1594>; Maier, Bartoš & Wagenmakers, 2022,
<doi:10.1037/met0000405>). Users can define a wide range of prior distributions for +
the effect size, heterogeneity, publication bias (including selection models and PET-PEESE),
and moderator components. The package provides convenient functions for summary, visualizations, and
fit diagnostics.
Author: Frantisek Bartos [aut, cre] ,
Maximilian Maier [aut] ,
Eric-Jan Wagenmakers [ths] ,
Joris Goosen [ctb],
Matthew Denwood [cph] ,
Martyn Plummer [cph]
Maintainer: Frantisek Bartos <f.bartos96@gmail.com>
Diff between RoBMA versions 3.3.0 dated 2025-01-15 and 3.4.0 dated 2025-02-04
DESCRIPTION | 6 MD5 | 87 +++--- NAMESPACE | 2 NEWS.md | 12 R/BiBMA-reg.R |only R/BiBMA.R | 182 ++++++++------ R/RoBMA-reg.R | 126 ---------- R/RoBMA.R | 28 +- R/check-priors-and-models.R | 450 ++++++++++++++++++------------------ R/fit-and-marglik.R | 150 +++++++++++- R/plots.R | 2 R/priors.R | 81 ++++++ R/tools.R | 23 - R/transformations.R | 164 +++++++++++++ R/utilities.R | 1 build/partial.rdb |binary inst/REFERENCES.bib | 2 inst/doc/CustomEnsembles.html | 4 inst/doc/FastRoBMA.html | 10 inst/doc/HierarchicalBMA.html | 4 inst/doc/MedicineBMA.html | 4 inst/doc/MedicineBiBMA.html | 4 inst/doc/MetaRegression.html | 10 inst/doc/ReproducingBMA.html | 4 man/BiBMA.Rd | 28 +- man/BiBMA.reg.Rd |only man/RoBMA-package.Rd | 84 +++--- man/RoBMA_options.Rd | 54 ++-- man/effect_sizes.Rd | 186 +++++++------- man/forest.Rd | 144 +++++------ man/interpret.Rd | 42 +-- man/plot.RoBMA.Rd | 218 ++++++++--------- man/plot_models.Rd | 164 ++++++------- man/print.RoBMA.Rd | 44 +-- man/print.summary.RoBMA.Rd | 44 +-- man/prior.Rd | 170 ++++++------- man/prior_PEESE.Rd | 156 ++++++------ man/prior_PET.Rd | 156 ++++++------ man/prior_none.Rd | 80 +++--- man/prior_weightfunction.Rd | 124 ++++----- man/sample_sizes.Rd | 120 ++++----- man/set_default_binomial_priors.Rd |only man/set_default_priors.Rd | 150 ++++++------ man/standard_errors.Rd | 190 +++++++-------- man/weighted_multivariate_normal.Rd | 72 ++--- man/weighted_normal.Rd | 206 ++++++++-------- 46 files changed, 2062 insertions(+), 1726 deletions(-)
Title: Download and Display Map Tiles
Description: To create maps from tiles, 'maptiles' downloads, composes and
displays tiles from a large number of providers (e.g. 'OpenStreetMap',
'Stadia', 'Esri', 'CARTO', or 'Thunderforest').
Author: Timothee Giraud [cre, aut] ,
Diego Hernangomez [ctb] ,
Robert J. Hijmans [ctb] ,
Hugh A. Graham [ctb]
Maintainer: Timothee Giraud <timothee.giraud@cnrs.fr>
Diff between maptiles versions 0.8.0 dated 2024-10-22 and 0.9.0 dated 2025-02-04
maptiles-0.8.0/maptiles/R/sysdata.rda |only maptiles-0.9.0/maptiles/DESCRIPTION | 10 +- maptiles-0.9.0/maptiles/MD5 | 23 ++--- maptiles-0.9.0/maptiles/NEWS.md | 13 ++ maptiles-0.9.0/maptiles/R/get_tiles.R | 60 +++++++------ maptiles-0.9.0/maptiles/R/providers.R | 62 +++++++++----- maptiles-0.9.0/maptiles/R/utils.R | 42 ++++++++- maptiles-0.9.0/maptiles/README.md | 9 +- maptiles-0.9.0/maptiles/inst/tinytest/test_maptiles.R | 13 +- maptiles-0.9.0/maptiles/man/figures/README-example-1.png |binary maptiles-0.9.0/maptiles/man/figures/README-example2-1.png |binary maptiles-0.9.0/maptiles/man/figures/README-front.png |binary maptiles-0.9.0/maptiles/man/get_tiles.Rd | 55 +++++++----- 13 files changed, 189 insertions(+), 98 deletions(-)
Title: Fast Functions for Prime Numbers
Description: Fast functions for dealing with prime numbers, such as testing
whether a number is prime and generating a sequence prime numbers.
Additional functions include finding prime factors and Ruth-Aaron pairs,
finding next and previous prime numbers in the series, finding or estimating
the nth prime, estimating the number of primes less than or equal to an
arbitrary number, computing primorials, prime k-tuples (e.g., twin primes),
finding the greatest common divisor and smallest (least) common multiple,
testing whether two numbers are coprime, and computing Euler's totient
function. Most functions are vectorized for speed and convenience.
Author: Os Keyes [aut],
Paul Egeler [aut, cre]
Maintainer: Paul Egeler <paulegeler@gmail.com>
Diff between primes versions 1.6.0 dated 2024-01-08 and 1.6.1 dated 2025-02-04
primes-1.6.0/primes/tests/failures |only primes-1.6.1/primes/DESCRIPTION | 18 +++++++++--------- primes-1.6.1/primes/MD5 | 7 +++---- primes-1.6.1/primes/R/phi.R | 2 +- primes-1.6.1/primes/README.md | 2 +- 5 files changed, 14 insertions(+), 15 deletions(-)
Title: Single-Source Capture-Recapture Models
Description: Implementation of single-source capture-recapture methods for population size estimation using zero-truncated, zero-one truncated and zero-truncated one-inflated Poisson, Geometric and Negative Binomial regression as well as Zelterman's and Chao's regression. Package includes point and interval estimators for the population size with variances estimated using analytical or bootstrap method. Details can be found in: van der Heijden et all. (2003) <doi:10.1191/1471082X03st057oa>, Böhning and van der Heijden (2019) <doi:10.1214/18-AOAS1232>, Böhning et al. (2020) Capture-Recapture Methods for the Social and Medical Sciences or Böhning and Friedl (2021) <doi:10.1007/s10260-021-00556-8>.
Author: Piotr Chlebicki [aut, ctb] ,
Maciej Beresewicz [aut, cre]
Maintainer: Maciej Beresewicz <maciej.beresewicz@ue.poznan.pl>
Diff between singleRcapture versions 0.2.1.4 dated 2025-01-07 and 0.2.2 dated 2025-02-04
singleRcapture-0.2.1.4/singleRcapture/R/methodsNotWorking.R |only singleRcapture-0.2.2/singleRcapture/DESCRIPTION | 22 - singleRcapture-0.2.2/singleRcapture/MD5 | 132 +++++----- singleRcapture-0.2.2/singleRcapture/NAMESPACE | 8 singleRcapture-0.2.2/singleRcapture/NEWS.md | 10 singleRcapture-0.2.2/singleRcapture/R/Chao.R | 12 singleRcapture-0.2.2/singleRcapture/R/Hurdleztgeom.R | 79 +++-- singleRcapture-0.2.2/singleRcapture/R/Hurdleztnegbin.R | 66 ++--- singleRcapture-0.2.2/singleRcapture/R/Hurdleztpoisson.R | 31 +- singleRcapture-0.2.2/singleRcapture/R/Internals.R | 71 +---- singleRcapture-0.2.2/singleRcapture/R/control.R | 10 singleRcapture-0.2.2/singleRcapture/R/data.R | 2 singleRcapture-0.2.2/singleRcapture/R/estimatePopsize.R | 123 +-------- singleRcapture-0.2.2/singleRcapture/R/estimatePopsizeFit.R | 32 -- singleRcapture-0.2.2/singleRcapture/R/leave-one-out.R | 5 singleRcapture-0.2.2/singleRcapture/R/linkFunctions.R | 99 +++---- singleRcapture-0.2.2/singleRcapture/R/marginal.R | 8 singleRcapture-0.2.2/singleRcapture/R/miscDiagnostics.R | 5 singleRcapture-0.2.2/singleRcapture/R/nonparametricBootstrap.R | 35 -- singleRcapture-0.2.2/singleRcapture/R/oiztgeom.R | 37 +- singleRcapture-0.2.2/singleRcapture/R/oiztnegbin.R | 18 - singleRcapture-0.2.2/singleRcapture/R/oiztpoisson.R | 17 - singleRcapture-0.2.2/singleRcapture/R/parametricBootstrap.R | 8 singleRcapture-0.2.2/singleRcapture/R/plots.R | 63 +--- singleRcapture-0.2.2/singleRcapture/R/predict.R | 2 singleRcapture-0.2.2/singleRcapture/R/sandwichMethods.R | 23 + singleRcapture-0.2.2/singleRcapture/R/semiparametricBootstrap.R | 3 singleRcapture-0.2.2/singleRcapture/R/simulate.R | 1 singleRcapture-0.2.2/singleRcapture/R/smallMethods.R | 9 singleRcapture-0.2.2/singleRcapture/R/strataEstimation.R | 19 - singleRcapture-0.2.2/singleRcapture/R/summary.R | 4 singleRcapture-0.2.2/singleRcapture/R/updates.R | 3 singleRcapture-0.2.2/singleRcapture/R/zelterman.R | 10 singleRcapture-0.2.2/singleRcapture/R/zotgeom.R | 7 singleRcapture-0.2.2/singleRcapture/R/zotnegbin.R | 39 +- singleRcapture-0.2.2/singleRcapture/R/zotpoisson.R | 16 - singleRcapture-0.2.2/singleRcapture/R/ztHurdlegeom.R | 24 + singleRcapture-0.2.2/singleRcapture/R/ztHurdlenegbin.R | 29 -- singleRcapture-0.2.2/singleRcapture/R/ztHurdlepoisson.R | 32 +- singleRcapture-0.2.2/singleRcapture/R/ztgeom.R | 15 - singleRcapture-0.2.2/singleRcapture/R/ztnegbin.R | 84 +----- singleRcapture-0.2.2/singleRcapture/R/ztoigeom.R | 26 - singleRcapture-0.2.2/singleRcapture/R/ztoinegbin.R | 18 - singleRcapture-0.2.2/singleRcapture/R/ztoipoisson.R | 33 +- singleRcapture-0.2.2/singleRcapture/R/ztpoisson.R | 8 singleRcapture-0.2.2/singleRcapture/README.md | 67 ++--- singleRcapture-0.2.2/singleRcapture/build/singleRcapture.pdf |binary singleRcapture-0.2.2/singleRcapture/build/stage23.rdb |binary singleRcapture-0.2.2/singleRcapture/build/vignette.rds |only singleRcapture-0.2.2/singleRcapture/inst/doc |only singleRcapture-0.2.2/singleRcapture/inst/tinytest/test_developer_only.R | 1 singleRcapture-0.2.2/singleRcapture/inst/tinytest/test_inflated_hurdle.R | 2 singleRcapture-0.2.2/singleRcapture/inst/tinytest/test_singleRcapture.R | 1 singleRcapture-0.2.2/singleRcapture/inst/tinytest/test_zerotruncated.R | 1 singleRcapture-0.2.2/singleRcapture/man/estimatePopsize.Rd | 2 singleRcapture-0.2.2/singleRcapture/man/estimatePopsizeFit.Rd | 2 singleRcapture-0.2.2/singleRcapture/man/figures/README-plot-example-1.png |only singleRcapture-0.2.2/singleRcapture/man/figures/README-plot-inflated-1.png |only singleRcapture-0.2.2/singleRcapture/man/figures/README-unnamed-chunk-5-1.png |binary singleRcapture-0.2.2/singleRcapture/man/marginalFreq.Rd | 2 singleRcapture-0.2.2/singleRcapture/man/netherlandsimmigrant.Rd | 2 singleRcapture-0.2.2/singleRcapture/man/plot.singleRStaticCountData.Rd | 4 singleRcapture-0.2.2/singleRcapture/man/popSizeEst.Rd | 2 singleRcapture-0.2.2/singleRcapture/man/predict.singleRStaticCountData.Rd | 5 singleRcapture-0.2.2/singleRcapture/man/redoPopEstimation.Rd | 2 singleRcapture-0.2.2/singleRcapture/man/summary.singleRmargin.Rd | 2 singleRcapture-0.2.2/singleRcapture/man/vcov.singleRStaticCountData.Rd | 2 singleRcapture-0.2.2/singleRcapture/man/vcovHC.singleRStaticCountData.Rd | 2 singleRcapture-0.2.2/singleRcapture/vignettes |only 69 files changed, 563 insertions(+), 834 deletions(-)
More information about singleRcapture at CRAN
Permanent link
Title: Tools for Analyzing Remote Sensing Forest Data
Description: Tools for analyzing remote sensing forest data, including functions for detecting treetops from canopy models, outlining tree crowns, and calculating textural metrics.
Author: Andrew Plowright [aut, cre],
Jean-Romain Roussel [ctb]
Maintainer: Andrew Plowright <andrew.plowright@alumni.ubc.ca>
Diff between ForestTools versions 1.0.2 dated 2024-04-28 and 1.0.3 dated 2025-02-03
ForestTools-1.0.2/ForestTools/README.md |only ForestTools-1.0.3/ForestTools/DESCRIPTION | 10 ForestTools-1.0.3/ForestTools/MD5 | 15 ForestTools-1.0.3/ForestTools/NEWS.md | 246 ++--- ForestTools-1.0.3/ForestTools/R/vwf.R | 419 +++++----- ForestTools-1.0.3/ForestTools/man/vwf.Rd | 7 ForestTools-1.0.3/ForestTools/tests/testthat/test_data/ttops_orphans.gpkg |only ForestTools-1.0.3/ForestTools/tests/testthat/test_data/ttops_test.gpkg |only ForestTools-1.0.3/ForestTools/tests/testthat/test_glcm_internal.R | 236 ++--- ForestTools-1.0.3/ForestTools/tests/testthat/test_mcws.R | 109 +- 10 files changed, 529 insertions(+), 513 deletions(-)
Title: Publication-Ready PCA, t-SNE, and UMAP Plots
Description: Provides tools for creating publication-ready dimensionality reduction plots, including Principal Component Analysis (PCA), t-Distributed Stochastic Neighbor Embedding (t-SNE), and Uniform Manifold Approximation and Projection (UMAP). This package helps visualize high-dimensional data with options for custom labels, density plots, and faceting, using the 'ggplot2' framework Wickham (2016) <doi:10.1007/978-3-319-24277-4>.
Author: Yaoxiang Li [cre, aut]
Maintainer: Yaoxiang Li <liyaoxiang@outlook.com>
Diff between ggpca versions 0.1.2 dated 2024-10-28 and 0.1.3 dated 2025-02-03
DESCRIPTION | 6 MD5 | 17 - NAMESPACE | 3 R/utils.R | 187 +++++++++++++++---- build/vignette.rds |binary inst/doc/ggpca-examples.Rmd | 420 +++++++++++++++++++++---------------------- inst/doc/ggpca-examples.html | 38 +-- man/ggpca.Rd | 11 - man/process_missing_value.Rd |only vignettes/ggpca-examples.Rmd | 420 +++++++++++++++++++++---------------------- 10 files changed, 612 insertions(+), 490 deletions(-)
Title: Database Queries Using 'data.table' Syntax
Description: Query database tables over a 'DBI' connection using 'data.table' syntax.
Attach database schemas to the search path. Automatically merge using foreign
key constraints.
Author: Kjell P. Konis [aut, cre],
Luis Rocha [ctb]
Maintainer: Kjell P. Konis <kjellk@gmail.com>
Diff between dbi.table versions 1.0.1 dated 2024-12-10 and 1.0.3 dated 2025-02-03
dbi.table-1.0.1/dbi.table/inst/example_files/LICENSE |only dbi.table-1.0.1/dbi.table/inst/example_files/chinook_export/album.csv.bz2 |only dbi.table-1.0.1/dbi.table/inst/example_files/chinook_export/artist.csv.bz2 |only dbi.table-1.0.1/dbi.table/inst/example_files/chinook_export/customer.csv.bz2 |only dbi.table-1.0.1/dbi.table/inst/example_files/chinook_export/employee.csv.bz2 |only dbi.table-1.0.1/dbi.table/inst/example_files/chinook_export/genre.csv.bz2 |only dbi.table-1.0.1/dbi.table/inst/example_files/chinook_export/invoice.csv.bz2 |only dbi.table-1.0.1/dbi.table/inst/example_files/chinook_export/invoiceline.csv.bz2 |only dbi.table-1.0.1/dbi.table/inst/example_files/chinook_export/mediatype.csv.bz2 |only dbi.table-1.0.1/dbi.table/inst/example_files/chinook_export/playlist.csv.bz2 |only dbi.table-1.0.1/dbi.table/inst/example_files/chinook_export/playlisttrack.csv.bz2 |only dbi.table-1.0.1/dbi.table/inst/example_files/chinook_export/track.csv.bz2 |only dbi.table-1.0.1/dbi.table/man/as.data.table.Rd |only dbi.table-1.0.3/dbi.table/DESCRIPTION | 22 dbi.table-1.0.3/dbi.table/MD5 | 98 ++-- dbi.table-1.0.3/dbi.table/NAMESPACE | 6 dbi.table-1.0.3/dbi.table/NEWS.md |only dbi.table-1.0.3/dbi.table/R/DBI_methods.R | 19 dbi.table-1.0.3/dbi.table/R/as.data.table.R |only dbi.table-1.0.3/dbi.table/R/attach.R | 65 +- dbi.table-1.0.3/dbi.table/R/calls.R | 10 dbi.table-1.0.3/dbi.table/R/catalog.R | 140 +++--- dbi.table-1.0.3/dbi.table/R/connection.R | 4 dbi.table-1.0.3/dbi.table/R/dbi.table.R | 84 +-- dbi.table-1.0.3/dbi.table/R/examples.R | 14 dbi.table-1.0.3/dbi.table/R/extract.R | 31 - dbi.table-1.0.3/dbi.table/R/information_schema.R | 111 ++--- dbi.table-1.0.3/dbi.table/R/merge.R | 146 ++++-- dbi.table-1.0.3/dbi.table/R/onLoad.R | 13 dbi.table-1.0.3/dbi.table/R/reference.test.R | 22 dbi.table-1.0.3/dbi.table/R/relational.R | 221 +++------- dbi.table-1.0.3/dbi.table/R/sql.join.R | 155 +++---- dbi.table-1.0.3/dbi.table/R/utilities.R | 86 +++ dbi.table-1.0.3/dbi.table/inst/doc/introduction_to_dbi_table.R | 1 dbi.table-1.0.3/dbi.table/inst/doc/introduction_to_dbi_table.Rmd | 3 dbi.table-1.0.3/dbi.table/inst/doc/introduction_to_dbi_table.html | 21 dbi.table-1.0.3/dbi.table/inst/example_files/chinook_export/LICENSE |only dbi.table-1.0.3/dbi.table/inst/example_files/chinook_export/album.csv |only dbi.table-1.0.3/dbi.table/inst/example_files/chinook_export/artist.csv |only dbi.table-1.0.3/dbi.table/inst/example_files/chinook_export/customer.csv |only dbi.table-1.0.3/dbi.table/inst/example_files/chinook_export/employee.csv |only dbi.table-1.0.3/dbi.table/inst/example_files/chinook_export/genre.csv |only dbi.table-1.0.3/dbi.table/inst/example_files/chinook_export/invoice.csv |only dbi.table-1.0.3/dbi.table/inst/example_files/chinook_export/invoiceline.csv |only dbi.table-1.0.3/dbi.table/inst/example_files/chinook_export/mediatype.csv |only dbi.table-1.0.3/dbi.table/inst/example_files/chinook_export/playlist.csv |only dbi.table-1.0.3/dbi.table/inst/example_files/chinook_export/playlisttrack.csv |only dbi.table-1.0.3/dbi.table/inst/example_files/chinook_export/track.csv |only dbi.table-1.0.3/dbi.table/man/DBI-methods.Rd | 3 dbi.table-1.0.3/dbi.table/man/as.data.frame.Rd |only dbi.table-1.0.3/dbi.table/man/dbi.attach.Rd | 6 dbi.table-1.0.3/dbi.table/man/dbi.catalog.Rd | 12 dbi.table-1.0.3/dbi.table/man/dbi.table-package.Rd | 4 dbi.table-1.0.3/dbi.table/man/merge.Rd | 24 - dbi.table-1.0.3/dbi.table/man/reference.test.Rd | 1 dbi.table-1.0.3/dbi.table/man/sql.join.Rd | 8 dbi.table-1.0.3/dbi.table/tests/testthat/helper-library(data.table).R |only dbi.table-1.0.3/dbi.table/tests/testthat/test-DBI_methods.R |only dbi.table-1.0.3/dbi.table/tests/testthat/test-assumptions.R | 10 dbi.table-1.0.3/dbi.table/tests/testthat/test-attach.R | 47 ++ dbi.table-1.0.3/dbi.table/tests/testthat/test-data.table-set-functions.R |only dbi.table-1.0.3/dbi.table/tests/testthat/test-dbi.table.R | 1 dbi.table-1.0.3/dbi.table/tests/testthat/test-merge.R | 4 dbi.table-1.0.3/dbi.table/tests/testthat/test-relational.R |only dbi.table-1.0.3/dbi.table/tests/testthat/test-sql.join.R | 3 dbi.table-1.0.3/dbi.table/vignettes/introduction_to_dbi_table.Rmd | 3 66 files changed, 775 insertions(+), 623 deletions(-)
Title: Access, Retrieve, and Work with CMHC Data
Description: Wrapper around the Canadian Mortgage and Housing Corporation (CMHC) web interface. It enables programmatic and reproducible access to a wide variety of housing data from CMHC.
Author: Jens von Bergmann [aut, cre]
Maintainer: Jens von Bergmann <jens@mountainmath.ca>
Diff between cmhc versions 0.2.9 dated 2024-11-05 and 0.2.10 dated 2025-02-03
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- NEWS.md | 5 +++++ R/cmhc_tables.R | 3 ++- README.md | 6 +++--- build/vignette.rds |binary inst/doc/basic_usage.html | 6 +++--- inst/doc/rental_universe.html | 4 ++-- 8 files changed, 25 insertions(+), 19 deletions(-)
Title: Plot Stacked Areas and Confidence Bands as Filled Polygons
Description: Plot stacked areas and confidence bands as filled polygons, or add
polygons to existing plots. A variety of input formats are supported,
including vectors, matrices, data frames, formulas, etc.
Author: Arni Magnusson [aut, cre]
Maintainer: Arni Magnusson <thisisarni@gmail.com>
Diff between areaplot versions 2.1.2 dated 2024-01-14 and 2.1.3 dated 2025-02-03
DESCRIPTION | 10 +++++----- MD5 | 16 ++++++++-------- NEWS.md | 14 ++++++++++++++ R/areaplot-package.R | 6 ++---- R/areaplot.R | 38 +++++++++++++++++++++++++++----------- R/confplot.R | 8 +++++--- man/areaplot-package.Rd | 9 ++++++++- man/areaplot.Rd | 19 ++++++++++++++++--- man/confplot.Rd | 6 +++--- 9 files changed, 88 insertions(+), 38 deletions(-)
Title: Filter Module for 'teal' Applications
Description: Data filtering module for 'teal' applications. Allows for
interactive filtering of data stored in 'data.frame' and
'MultiAssayExperiment' objects. Also displays filtered and unfiltered
observation counts.
Author: Dawid Kaledkowski [aut, cre] ,
Pawel Rucki [aut],
Aleksander Chlebowski [aut] ,
Andre Verissimo [aut] ,
Kartikeya Kirar [aut],
Marcin Kosinski [aut],
Chendi Liao [rev],
Dony Unardi [rev],
Andrew Bates [aut],
Mahmoud Hallal [aut],
Nikolas Burkoff [aut [...truncated...]
Maintainer: Dawid Kaledkowski <dawid.kaledkowski@roche.com>
Diff between teal.slice versions 0.5.1 dated 2024-04-30 and 0.6.0 dated 2025-02-03
teal.slice-0.5.1/teal.slice/man/check_simple_name.Rd |only teal.slice-0.6.0/teal.slice/DESCRIPTION | 27 teal.slice-0.6.0/teal.slice/MD5 | 130 +-- teal.slice-0.6.0/teal.slice/NEWS.md | 19 teal.slice-0.6.0/teal.slice/R/FilterState.R | 76 +- teal.slice-0.6.0/teal.slice/R/FilterStateChoices.R | 60 - teal.slice-0.6.0/teal.slice/R/FilterStateDate.R | 22 teal.slice-0.6.0/teal.slice/R/FilterStateDatettime.R | 26 teal.slice-0.6.0/teal.slice/R/FilterStateExpr.R | 38 - teal.slice-0.6.0/teal.slice/R/FilterStateLogical.R | 14 teal.slice-0.6.0/teal.slice/R/FilterStateRange.R | 116 +-- teal.slice-0.6.0/teal.slice/R/FilterStates.R | 98 +- teal.slice-0.6.0/teal.slice/R/FilterStatesMatrix.R | 5 teal.slice-0.6.0/teal.slice/R/FilterStatesSE.R | 41 - teal.slice-0.6.0/teal.slice/R/FilteredData-utils.R | 18 teal.slice-0.6.0/teal.slice/R/FilteredData.R | 354 ++++------ teal.slice-0.6.0/teal.slice/R/FilteredDataset.R | 199 +++-- teal.slice-0.6.0/teal.slice/R/FilteredDatasetDataframe.R | 15 teal.slice-0.6.0/teal.slice/R/FilteredDatasetDefault.R | 3 teal.slice-0.6.0/teal.slice/R/FilteredDatasetMAE.R | 8 teal.slice-0.6.0/teal.slice/R/count_labels.R | 14 teal.slice-0.6.0/teal.slice/R/filter_panel_api.R | 9 teal.slice-0.6.0/teal.slice/R/teal_slice.R | 1 teal.slice-0.6.0/teal.slice/R/teal_slices.R | 3 teal.slice-0.6.0/teal.slice/R/utils.R | 99 ++ teal.slice-0.6.0/teal.slice/R/zzz.R | 2 teal.slice-0.6.0/teal.slice/README.md | 11 teal.slice-0.6.0/teal.slice/build/vignette.rds |binary teal.slice-0.6.0/teal.slice/inst/css/filter-panel.css | 95 ++ teal.slice-0.6.0/teal.slice/inst/doc/filter-panel-for-developers.R | 2 teal.slice-0.6.0/teal.slice/inst/doc/filter-panel-for-developers.Rmd | 2 teal.slice-0.6.0/teal.slice/inst/doc/filter-panel-for-developers.html | 259 +++---- teal.slice-0.6.0/teal.slice/inst/doc/teal-slice-classes.html | 22 teal.slice-0.6.0/teal.slice/inst/doc/teal-slice.R | 2 teal.slice-0.6.0/teal.slice/inst/doc/teal-slice.Rmd | 30 teal.slice-0.6.0/teal.slice/inst/doc/teal-slice.html | 118 +-- teal.slice-0.6.0/teal.slice/inst/js/icons.js |only teal.slice-0.6.0/teal.slice/inst/js/togglePanelItems.js |only teal.slice-0.6.0/teal.slice/man/ChoicesFilterState.Rd | 2 teal.slice-0.6.0/teal.slice/man/DFFilterStates.Rd | 1 teal.slice-0.6.0/teal.slice/man/DataframeFilteredDataset.Rd | 2 teal.slice-0.6.0/teal.slice/man/DateFilterState.Rd | 2 teal.slice-0.6.0/teal.slice/man/DatetimeFilterState.Rd | 2 teal.slice-0.6.0/teal.slice/man/DefaultFilteredDataset.Rd | 6 teal.slice-0.6.0/teal.slice/man/EmptyFilterState.Rd | 2 teal.slice-0.6.0/teal.slice/man/FilterState.Rd | 17 teal.slice-0.6.0/teal.slice/man/FilterStateExpr.Rd | 17 teal.slice-0.6.0/teal.slice/man/FilterStates.Rd | 18 teal.slice-0.6.0/teal.slice/man/FilteredData.Rd | 76 -- teal.slice-0.6.0/teal.slice/man/FilteredDataset.Rd | 37 - teal.slice-0.6.0/teal.slice/man/LogicalFilterState.Rd | 2 teal.slice-0.6.0/teal.slice/man/MAEFilterStates.Rd | 1 teal.slice-0.6.0/teal.slice/man/MAEFilteredDataset.Rd | 2 teal.slice-0.6.0/teal.slice/man/MatrixFilterStates.Rd | 1 teal.slice-0.6.0/teal.slice/man/RangeFilterState.Rd | 2 teal.slice-0.6.0/teal.slice/man/SEFilterStates.Rd | 1 teal.slice-0.6.0/teal.slice/man/dot-finalize_session_bindings.Rd |only teal.slice-0.6.0/teal.slice/man/init_filtered_data.Rd | 6 teal.slice-0.6.0/teal.slice/man/pair_counts.Rd |only teal.slice-0.6.0/teal.slice/man/sanitize_id.Rd |only teal.slice-0.6.0/teal.slice/man/teal_slices.Rd | 2 teal.slice-0.6.0/teal.slice/tests/testthat/test-ChoicesFilterState.R | 82 ++ teal.slice-0.6.0/teal.slice/tests/testthat/test-DataframeFilteredDataset.R | 4 teal.slice-0.6.0/teal.slice/tests/testthat/test-FilteredData.R | 53 - teal.slice-0.6.0/teal.slice/tests/testthat/test-teal_slice.R | 5 teal.slice-0.6.0/teal.slice/tests/testthat/test-teal_slices.R | 7 teal.slice-0.6.0/teal.slice/tests/testthat/test-utils.R | 111 ++- teal.slice-0.6.0/teal.slice/vignettes/filter-panel-for-developers.Rmd | 2 teal.slice-0.6.0/teal.slice/vignettes/teal-slice.Rmd | 30 69 files changed, 1373 insertions(+), 1058 deletions(-)
Title: Fast Imputations Using 'Rcpp' and 'Armadillo'
Description: Fast imputations under the object-oriented programming paradigm.
Moreover there are offered a few functions built to work with popular R packages such as 'data.table' or 'dplyr'.
The biggest improvement in time performance could be achieve for a calculation where a grouping variable have to be used.
A single evaluation of a quantitative model for the multiple imputations is another major enhancement.
A new major improvement is one of the fastest predictive mean matching in the R world because of presorting and binary search.
Author: Maciej Nasinski [aut, cre]
Maintainer: Maciej Nasinski <nasinski.maciej@gmail.com>
Diff between miceFast versions 0.8.2 dated 2022-11-17 and 0.8.5 dated 2025-02-03
miceFast-0.8.2/miceFast/tests/testthat/Rplots.pdf |only miceFast-0.8.5/miceFast/DESCRIPTION | 9 miceFast-0.8.5/miceFast/MD5 | 41 miceFast-0.8.5/miceFast/NEWS.md | 10 miceFast-0.8.5/miceFast/R/VIF.R | 9 miceFast-0.8.5/miceFast/README.md | 118 +- miceFast-0.8.5/miceFast/build/vignette.rds |binary miceFast-0.8.5/miceFast/inst/doc/miceFast-intro.R | 340 ++---- miceFast-0.8.5/miceFast/inst/doc/miceFast-intro.Rmd | 587 ++++------- miceFast-0.8.5/miceFast/inst/doc/miceFast-intro.html | 925 +++++++---------- miceFast-0.8.5/miceFast/man/Rcpp_corrData-class.Rd | 13 miceFast-0.8.5/miceFast/man/Rcpp_miceFast-class.Rd | 9 miceFast-0.8.5/miceFast/man/VIF.Rd | 2 miceFast-0.8.5/miceFast/src/Makevars | 2 miceFast-0.8.5/miceFast/src/Makevars.win | 3 miceFast-0.8.5/miceFast/src/R_funs.cpp | 176 +-- miceFast-0.8.5/miceFast/src/corrData.cpp | 95 - miceFast-0.8.5/miceFast/src/miceFast.h | 84 - miceFast-0.8.5/miceFast/src/miceFast_class.cpp | 1006 ++++++++----------- miceFast-0.8.5/miceFast/src/miceFast_quantmodels.cpp | 358 +++--- miceFast-0.8.5/miceFast/tests/testthat.R | 2 miceFast-0.8.5/miceFast/vignettes/miceFast-intro.Rmd | 587 ++++------- 22 files changed, 1847 insertions(+), 2529 deletions(-)
Title: Simple Framework for Simple Automation
Description: Build a project framework for users with
access to only the most basic of automation tools.
Author: Alexander Senetcky [aut, cre, cph]
Maintainer: Alexander Senetcky <asenetcky@gmail.com>
Diff between strata versions 1.0.1 dated 2024-11-27 and 1.4.0 dated 2025-02-03
strata-1.0.1/strata/R/adhoc.R |only strata-1.0.1/strata/R/builders.R |only strata-1.0.1/strata/R/execution_plan.R |only strata-1.0.1/strata/R/logging.R |only strata-1.0.1/strata/R/main.R |only strata-1.0.1/strata/R/manage_tomls.R |only strata-1.0.1/strata/R/quick_build.R |only strata-1.0.1/strata/R/read_write_toml.R |only strata-1.0.1/strata/R/survey_strata.R |only strata-1.0.1/strata/R/user_toml_interaction.R |only strata-1.0.1/strata/tests/testthat/test-adhoc.R |only strata-1.0.1/strata/tests/testthat/test-builders.R |only strata-1.0.1/strata/tests/testthat/test-execution_plan.R |only strata-1.0.1/strata/tests/testthat/test-logging.R |only strata-1.0.1/strata/tests/testthat/test-main.R |only strata-1.0.1/strata/tests/testthat/test-manage_tomls.R |only strata-1.0.1/strata/tests/testthat/test-quick_build.R |only strata-1.0.1/strata/tests/testthat/test-survey_strata.R |only strata-1.0.1/strata/tests/testthat/test-user_toml_interaction.R |only strata-1.4.0/strata/DESCRIPTION | 9 strata-1.4.0/strata/LICENSE | 4 strata-1.4.0/strata/MD5 | 96 strata-1.4.0/strata/NAMESPACE | 42 strata-1.4.0/strata/NEWS.md | 128 - strata-1.4.0/strata/R/adhoc-core.R |only strata-1.4.0/strata/R/adhoc-utils.R |only strata-1.4.0/strata/R/build-core.R |only strata-1.4.0/strata/R/build-quick.R |only strata-1.4.0/strata/R/log-core.R |only strata-1.4.0/strata/R/main-core.R |only strata-1.4.0/strata/R/main-utils.R |only strata-1.4.0/strata/R/strata-package.R | 18 strata-1.4.0/strata/R/survey-core.R |only strata-1.4.0/strata/R/survey-utils.R |only strata-1.4.0/strata/R/toml-core.R |only strata-1.4.0/strata/R/toml-io.R |only strata-1.4.0/strata/R/toml-utils.R |only strata-1.4.0/strata/README.md | 1085 ++++++++-- strata-1.4.0/strata/man/adhoc.Rd |only strata-1.4.0/strata/man/adhoc_lamina.Rd | 66 strata-1.4.0/strata/man/adhoc_stratum.Rd | 66 strata-1.4.0/strata/man/build_lamina.Rd | 60 strata-1.4.0/strata/man/build_outlined_strata_project.Rd | 116 - strata-1.4.0/strata/man/build_quick_strata_project.Rd | 66 strata-1.4.0/strata/man/build_stratum.Rd | 54 strata-1.4.0/strata/man/edit_toml.Rd | 146 - strata-1.4.0/strata/man/figures/lifecycle-deprecated.svg | 42 strata-1.4.0/strata/man/figures/lifecycle-experimental.svg | 42 strata-1.4.0/strata/man/figures/lifecycle-stable.svg | 58 strata-1.4.0/strata/man/figures/lifecycle-superseded.svg | 42 strata-1.4.0/strata/man/log_error.Rd | 50 strata-1.4.0/strata/man/log_message.Rd | 66 strata-1.4.0/strata/man/log_total_time.Rd | 57 strata-1.4.0/strata/man/main.Rd | 114 - strata-1.4.0/strata/man/strata-package.Rd | 48 strata-1.4.0/strata/man/survey_log.Rd |only strata-1.4.0/strata/man/survey_strata.Rd | 76 strata-1.4.0/strata/man/survey_tomls.Rd | 52 strata-1.4.0/strata/man/view_toml.Rd | 48 strata-1.4.0/strata/tests/testthat.R | 24 strata-1.4.0/strata/tests/testthat/test-adhoc-core.R |only strata-1.4.0/strata/tests/testthat/test-adhoc-utils.R |only strata-1.4.0/strata/tests/testthat/test-build-core.R |only strata-1.4.0/strata/tests/testthat/test-build-quick.R |only strata-1.4.0/strata/tests/testthat/test-log-core.R |only strata-1.4.0/strata/tests/testthat/test-main-core.R |only strata-1.4.0/strata/tests/testthat/test-main-utils.R |only strata-1.4.0/strata/tests/testthat/test-survey-core.R |only strata-1.4.0/strata/tests/testthat/test-survey-utils.R |only strata-1.4.0/strata/tests/testthat/test-toml-core.R |only strata-1.4.0/strata/tests/testthat/test-toml-utils.R |only 71 files changed, 1780 insertions(+), 895 deletions(-)
Title: 'tidyverse' Methods and 'ggplot2' Helpers for 'terra' Objects
Description: Extension of the 'tidyverse' for 'SpatRaster' and
'SpatVector' objects of the 'terra' package. It includes also new
'geom_' functions that provide a convenient way of visualizing 'terra'
objects with 'ggplot2'.
Author: Diego Hernangomez [aut, cre, cph]
,
Dewey Dunnington [ctb] ,
ggplot2 authors [cph]
Maintainer: Diego Hernangomez <diego.hernangomezherrero@gmail.com>
Diff between tidyterra versions 0.6.2 dated 2025-01-08 and 0.7.0 dated 2025-02-03
DESCRIPTION | 14 MD5 | 42 NEWS.md | 18 R/fortify-Spat.R | 24 R/geom_spat_contour.R | 970 +++++++-------- R/geom_spatraster.R | 23 R/scales_cross_blended.R | 1494 +++++++++++------------- R/scales_grass.R | 13 R/scales_hypso.R | 35 inst/schemaorg.json | 2 man/fortify.Spat.Rd | 24 man/geom_spat_contour.Rd | 6 man/scale_cross_blended.Rd | 26 man/scale_grass.Rd | 5 man/scale_hypso.Rd | 26 tests/testthat/test-fortify-Spat.R | 94 + tests/testthat/test-geom_spatraster_3lyr.R | 46 tests/testthat/test-scales_col_cross_blended.R | 37 tests/testthat/test-scales_col_hypso.R | 4 tests/testthat/test-scales_fill_cross_blended.R | 4 tests/testthat/test-scales_fill_hypso.R | 40 tests/testthat/test-scales_grass.R | 41 22 files changed, 1599 insertions(+), 1389 deletions(-)
Title: Interface Between 'GRASS' Geographical Information System and
'R'
Description: An interface between the 'GRASS' geographical information system ('GIS') and 'R', based on starting 'R' from within the 'GRASS' 'GIS' environment, or running a free-standing 'R' session in a temporary 'GRASS' location; the package provides facilities for using all 'GRASS' commands from the 'R' command line. The original interface package for 'GRASS 5' (2000-2010) is described in Bivand (2000) <doi:10.1016/S0098-3004(00)00057-1> and Bivand (2001) <https://www.r-project.org/conferences/DSC-2001/Proceedings/Bivand.pdf>. This was succeeded by 'spgrass6' for 'GRASS 6' (2006-2016) and 'rgrass7' for 'GRASS 7' (2015-present). The 'rgrass' package modernizes the interface for 'GRASS 8' while still permitting the use of 'GRASS 7'.
Author: Roger Bivand [aut] ,
Sebastian Jeworutzki [ctb] ,
Rainer Krug [ctb] ,
Robin Lovelace [ctb] ,
Markus Neteler [ctb] ,
Steven Pawley [cre, aut] ,
Floris Vanderhaeghe [ctb]
Maintainer: Steven Pawley <dr.stevenpawley@gmail.com>
Diff between rgrass versions 0.4-4 dated 2024-09-03 and 0.5-1 dated 2025-02-03
rgrass-0.4-4/rgrass/R/rgrass.R |only rgrass-0.4-4/rgrass/man/readRAST.Rd |only rgrass-0.4-4/rgrass/man/readVECT.Rd |only rgrass-0.4-4/rgrass/tests/test_XML_xml2.R |only rgrass-0.4-4/rgrass/tests/test_XML_xml2.Rout.save |only rgrass-0.4-4/rgrass/tests/test_terra_ptr.R |only rgrass-0.4-4/rgrass/tests/test_terra_ptr.Rout.save |only rgrass-0.5-1/rgrass/DESCRIPTION | 35 - rgrass-0.5-1/rgrass/MD5 | 59 - rgrass-0.5-1/rgrass/NAMESPACE | 71 +- rgrass-0.5-1/rgrass/NEWS.md | 16 rgrass-0.5-1/rgrass/R/gmeta.R |only rgrass-0.5-1/rgrass/R/initGRASS.R | 685 ++++++++++++++------- rgrass-0.5-1/rgrass/R/options.R | 56 + rgrass-0.5-1/rgrass/R/rast_link.R | 204 ++++++ rgrass-0.5-1/rgrass/R/rgrass-package.R |only rgrass-0.5-1/rgrass/R/vect_link.R | 19 rgrass-0.5-1/rgrass/R/vect_link_ng.R | 168 +++++ rgrass-0.5-1/rgrass/R/xml1.R | 231 +++++++ rgrass-0.5-1/rgrass/build/vignette.rds |binary rgrass-0.5-1/rgrass/inst/doc/coerce.Rmd | 4 rgrass-0.5-1/rgrass/inst/doc/coerce.html | 40 - rgrass-0.5-1/rgrass/inst/doc/use.Rmd | 6 rgrass-0.5-1/rgrass/inst/doc/use.html | 21 rgrass-0.5-1/rgrass/man/execGRASS.Rd | 317 +++++++-- rgrass-0.5-1/rgrass/man/gmeta.Rd | 87 +- rgrass-0.5-1/rgrass/man/initGRASS.Rd | 224 +++++- rgrass-0.5-1/rgrass/man/read_RAST.Rd |only rgrass-0.5-1/rgrass/man/read_VECT.Rd |only rgrass-0.5-1/rgrass/man/rgrass.Rd | 97 +- rgrass-0.5-1/rgrass/tests/testthat |only rgrass-0.5-1/rgrass/tests/testthat.R |only rgrass-0.5-1/rgrass/vignettes/coerce.Rmd | 4 rgrass-0.5-1/rgrass/vignettes/use.Rmd | 6 34 files changed, 1805 insertions(+), 545 deletions(-)
Title: Ordered Beta Regression Models with 'brms'
Description: Implements ordered beta regression models, which are for modeling continuous variables with upper and lower bounds, such as
survey sliders, dose-response relationships and indexes. For more information, see
Kubinec (2023) <doi:10.31235/osf.io/2sx6y>. The package is a front-end to the R package 'brms', which
facilitates a range of regression specifications, including hierarchical, dynamic and
multivariate modeling.
Author: Robert Kubinec [aut, cre]
Maintainer: Robert Kubinec <bobkubinec@gmail.com>
Diff between ordbetareg versions 0.7.2 dated 2023-08-10 and 0.8 dated 2025-02-03
ordbetareg-0.7.2/ordbetareg/data/fit_imputed.rda |only ordbetareg-0.7.2/ordbetareg/inst/doc/package_introduction.Rmd |only ordbetareg-0.7.2/ordbetareg/man/fit_imputed.Rd |only ordbetareg-0.7.2/ordbetareg/vignettes/package_introduction.Rmd |only ordbetareg-0.8/ordbetareg/DESCRIPTION | 25 ordbetareg-0.8/ordbetareg/MD5 | 39 ordbetareg-0.8/ordbetareg/NAMESPACE | 18 ordbetareg-0.8/ordbetareg/NEWS.md | 18 ordbetareg-0.8/ordbetareg/R/distribution.R | 5 ordbetareg-0.8/ordbetareg/R/modeling.R | 685 ++ ordbetareg-0.8/ordbetareg/R/package_info.R | 27 ordbetareg-0.8/ordbetareg/R/plot.R | 362 + ordbetareg-0.8/ordbetareg/build/vignette.rds |binary ordbetareg-0.8/ordbetareg/data/fit_multivariate.rda |binary ordbetareg-0.8/ordbetareg/data/ord_fit_mean.rda |binary ordbetareg-0.8/ordbetareg/data/ord_fit_phi.rda |binary ordbetareg-0.8/ordbetareg/inst/doc/package_introduction.R | 194 ordbetareg-0.8/ordbetareg/inst/doc/package_introduction.html | 2779 +++------- ordbetareg-0.8/ordbetareg/inst/doc/package_introduction.qmd |only ordbetareg-0.8/ordbetareg/man/ordbetareg-package.Rd |only ordbetareg-0.8/ordbetareg/man/ordbetareg.Rd | 36 ordbetareg-0.8/ordbetareg/man/plot_heiss.Rd |only ordbetareg-0.8/ordbetareg/man/posterior_epred_ordbeta.brmsfit.Rd |only ordbetareg-0.8/ordbetareg/man/pp_check_ordbeta.Rd | 9 ordbetareg-0.8/ordbetareg/vignettes/package_introduction.qmd |only 25 files changed, 2312 insertions(+), 1885 deletions(-)
Title: Clean and Analyze Continuous Glucose Monitor Data
Description: This code provides several different functions for cleaning and analyzing continuous glucose monitor data. Currently it works with 'Dexcom', 'iPro 2', 'Diasend', 'Libre', or 'Carelink' data. The cleandata() function takes a directory of CGM data files and prepares them for analysis. cgmvariables() iterates through a directory of cleaned CGM data files and produces a single spreadsheet with data for each file in either rows or columns. The column format of this spreadsheet is compatible with REDCap data upload. cgmreport() also iterates through a directory of cleaned data, and produces PDFs of individual and aggregate AGP plots. Please visit <https://github.com/childhealthbiostatscore/R-Packages/> to download the new-user guide.
Author: Tim Vigers [aut, cre]
Maintainer: Tim Vigers <timothy.vigers@cuanschutz.edu>
Diff between cgmanalysis versions 3.0.1 dated 2025-02-01 and 3.0.2 dated 2025-02-03
DESCRIPTION | 6 - MD5 | 6 - R/cgmvariables.R | 221 +++++++++++++++++++++++++++++----------------------- man/cgmvariables.Rd | 5 - 4 files changed, 135 insertions(+), 103 deletions(-)
More information about tmap.cartogram at CRAN
Permanent link
Title: Retrieving, Organizing, and Analyzing Estuary Monitoring Data
Description: Tools for retrieving, organizing, and analyzing environmental
data from the System Wide Monitoring Program of the National Estuarine
Research Reserve System <https://cdmo.baruch.sc.edu/>. These tools
address common challenges associated with continuous time series data
for environmental decision making.
Author: Marcus W. Beck [aut, cre],
Kimberly Cressman [ctb]
Maintainer: Marcus W. Beck <mbeck@tbep.org>
Diff between SWMPr versions 2.5.1 dated 2024-06-24 and 2.5.2 dated 2025-02-03
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NEWS.md | 4 ++++ R/decomp.R | 2 +- inst/doc/Overview.R | 18 +++++++++--------- inst/doc/Overview.html | 2 +- 6 files changed, 24 insertions(+), 20 deletions(-)
Title: Solving Mixed Model Equations in R
Description: Structural multivariate-univariate linear mixed model solver for estimation of multiple random effects with unknown variance-covariance structures (e.g., heterogeneous and unstructured) and known covariance among levels of random effects (e.g., pedigree and genomic relationship matrices) (Covarrubias-Pazaran, 2016 <doi:10.1371/journal.pone.0156744>; Maier et al., 2015 <doi:10.1016/j.ajhg.2014.12.006>; Jensen et al., 1997). REML estimates can be obtained using the Direct-Inversion Newton-Raphson and Direct-Inversion Average Information algorithms for the problems r x r (r being the number of records) or using the Henderson-based average information algorithm for the problem c x c (c being the number of coefficients to estimate). Spatial models can also be fitted using the two-dimensional spline functionality available.
Author: Giovanny Covarrubias-Pazaran [aut, cre]
Maintainer: Giovanny Covarrubias-Pazaran <cova_ruber@live.com.mx>
Diff between sommer versions 4.3.6 dated 2024-10-20 and 4.3.7 dated 2025-02-03
sommer-4.3.6/sommer/inst/doc/rice_example.R |only sommer-4.3.7/sommer/CHANGELOG | 2 sommer-4.3.7/sommer/DESCRIPTION | 8 sommer-4.3.7/sommer/MD5 | 33 +-- sommer-4.3.7/sommer/R/FUN_utils.R | 2 sommer-4.3.7/sommer/R/GWAS.R | 16 + sommer-4.3.7/sommer/R/mmec.R | 11 - sommer-4.3.7/sommer/R/mmer.R | 18 + sommer-4.3.7/sommer/man/mmec.Rd | 7 sommer-4.3.7/sommer/man/mmer.Rd | 3 sommer-4.3.7/sommer/src/MNR.cpp | 93 +++++----- sommer-4.3.7/sommer/src/RcppExports.cpp | 4 sommer-4.3.7/sommer/vignettes/v1.sommer.quick.start.html | 11 - sommer-4.3.7/sommer/vignettes/v2.sommer.changes.and.faqs.html | 5 sommer-4.3.7/sommer/vignettes/v3.sommer.qg.html | 11 - sommer-4.3.7/sommer/vignettes/v4.sommer.gxe.html | 9 sommer-4.3.7/sommer/vignettes/v5.sommer.vs.lme4.html | 5 sommer-4.3.7/sommer/vignettes/v6.sommer.spatial.html | 5 18 files changed, 135 insertions(+), 108 deletions(-)
Title: High Performance Tools for Combinatorics and Computational
Mathematics
Description: Provides optimized functions and flexible iterators implemented in
C++ for solving problems in combinatorics and computational mathematics.
Handles various combinatorial objects including combinations, permutations,
integer partitions and compositions, Cartesian products, unordered
Cartesian products, and partition of groups. Utilizes the RMatrix class
from 'RcppParallel' for thread safety. The combination and permutation
functions contain constraint parameters that allow for generation of all
results of a vector meeting specific criteria (e.g. finding all
combinations such that the sum is between two bounds). Capable of
ranking/unranking combinatorial objects efficiently (e.g. retrieve only the
nth lexicographical result) which sets up nicely for parallelization as
well as random sampling. Gmp support permits exploration where the total
number of results is large (e.g. comboSample(10000, 500, n = 4)).
Additionally, there are several high performance number theoretic
functions that are [...truncated...]
Author: Joseph Wood [aut, cre]
Maintainer: Joseph Wood <jwood000@gmail.com>
Diff between RcppAlgos versions 2.9.1 dated 2025-01-27 and 2.9.3 dated 2025-02-03
DESCRIPTION | 8 +- MD5 | 64 +++++++++---------- NEWS.md | 12 +++ inst/NEWS.Rd | 18 +++++ inst/doc/CombPermConstraints.Rmd | 44 ++++++------- inst/doc/CombPermConstraints.html | 46 ++++++------- inst/doc/CombinatorialSampling.Rmd | 20 ++--- inst/doc/CombinatorialSampling.html | 22 +++--- inst/doc/CombinatoricsIterators.Rmd | 81 +++++++++++------------- inst/doc/CombinatoricsIterators.html | 107 +++++++++++++++----------------- inst/doc/ComputationalMathematics.Rmd | 38 +++++------ inst/doc/ComputationalMathematics.html | 40 +++++------ inst/doc/GeneralCombinatorics.Rmd | 28 ++++---- inst/doc/GeneralCombinatorics.html | 30 ++++---- inst/doc/HighPerformanceBenchmarks.Rmd | 102 +++++++++++++++--------------- inst/doc/HighPerformanceBenchmarks.html | 104 +++++++++++++++---------------- inst/doc/OtherCombinatorics.Rmd | 22 +++--- inst/doc/OtherCombinatorics.html | 24 +++---- inst/doc/SubsetSum.Rmd | 32 ++++----- inst/doc/SubsetSum.html | 36 +++++----- inst/include/Combinations/ComboCount.h | 4 + src/ComboCount.cpp | 37 ++++++++--- src/ComboGroupsGeneral.cpp | 13 ++- src/NthCombination.cpp | 28 +------- src/RankCombination.cpp | 28 +------- vignettes/CombPermConstraints.Rmd | 44 ++++++------- vignettes/CombinatorialSampling.Rmd | 20 ++--- vignettes/CombinatoricsIterators.Rmd | 81 +++++++++++------------- vignettes/ComputationalMathematics.Rmd | 38 +++++------ vignettes/GeneralCombinatorics.Rmd | 28 ++++---- vignettes/HighPerformanceBenchmarks.Rmd | 102 +++++++++++++++--------------- vignettes/OtherCombinatorics.Rmd | 22 +++--- vignettes/SubsetSum.Rmd | 32 ++++----- 33 files changed, 684 insertions(+), 671 deletions(-)
Title: Define and Enforce Contracts for Dataframes as Function
Parameters
Description: A dataframe validation framework for package builders who use
dataframes as function parameters. It performs checks on column names, coerces
data-types, and checks grouping to make sure user inputs conform to a
specification provided by the package author. It provides a mechanism for
package authors to automatically document supported dataframe inputs and
selectively dispatch to functions depending on the format of a dataframe much
like S3 does for classes. It also contains some developer tools to make
working with and documenting dataframe specifications easier. It helps package
developers to improve their documentation and simplifies parameter validation
where dataframes are used as function parameters.
Author: Robert Challen [aut, cre, cph]
Maintainer: Robert Challen <rob.challen@bristol.ac.uk>
Diff between interfacer versions 0.3.2 dated 2024-11-14 and 0.3.3 dated 2025-02-03
DESCRIPTION | 12 ++++++------ MD5 | 14 +++++++------- NEWS.md | 7 ++++++- R/type-coerce.R | 4 +++- R/utils-functions.R | 7 ++++--- README.md | 19 +++++++++---------- build/vignette.rds |binary inst/doc/nesting.html | 2 +- 8 files changed, 36 insertions(+), 29 deletions(-)
Title: Access Data from the Atlas do Estado Brasileiro
Description: Facilitates access to the data from the Atlas do Estado Brasileiro
(<https://www.ipea.gov.br/atlasestado/>), maintained by the Instituto de
Pesquisa Econômica Aplicada (Ipea). It allows users to search for specific
series, list series or themes, and download data when available.
Author: Hugo Macedo [aut, cre, cph]
Maintainer: Hugo Macedo <aebdata@hhmace.do>
Diff between aebdata versions 0.1.3 dated 2025-01-12 and 0.1.4 dated 2025-02-03
DESCRIPTION | 6 +- MD5 | 8 +-- NEWS.md | 8 +++ inst/doc/exploring-data.html | 90 +++++++++++++++++++++++++++++++++++++++- tests/testthat/_data/search.rds |binary 5 files changed, 104 insertions(+), 8 deletions(-)
Title: Tensors and Neural Networks with 'GPU' Acceleration
Description: Provides functionality to define and train neural networks similar to
'PyTorch' by Paszke et al (2019) <doi:10.48550/arXiv.1912.01703> but written entirely in R
using the 'libtorch' library. Also supports low-level tensor operations and
'GPU' acceleration.
Author: Daniel Falbel [aut, cre, cph],
Javier Luraschi [aut],
Dmitriy Selivanov [ctb],
Athos Damiani [ctb],
Christophe Regouby [ctb],
Krzysztof Joachimiak [ctb],
Hamada S. Badr [ctb],
Sebastian Fischer [ctb],
Maximilian Pichler [ctb],
RStudio [cph]
Maintainer: Daniel Falbel <daniel@rstudio.com>
Diff between torch versions 0.14.0 dated 2025-01-30 and 0.14.1 dated 2025-02-03
DESCRIPTION | 6 MD5 | 18 - NEWS.md | 6 R/install.R | 2 build/partial.rdb |binary inst/doc/tensor-creation.html | 8 inst/doc/torchscript.html | 112 +++++----- inst/include/lantern/lantern.h | 5 inst/po/fr/LC_MESSAGES/R-torch.mo |binary po/R-fr.po | 400 +++++++++++++++++++++++++++++--------- 10 files changed, 393 insertions(+), 164 deletions(-)
Title: Forecasting Using State Space Models
Description: Functions implementing Single Source of Error state space models for purposes of time series analysis and forecasting.
The package includes ADAM (Svetunkov, 2023, <https://openforecast.org/adam/>),
Exponential Smoothing (Hyndman et al., 2008, <doi: 10.1007/978-3-540-71918-2>),
SARIMA (Svetunkov & Boylan, 2019 <doi: 10.1080/00207543.2019.1600764>),
Complex Exponential Smoothing (Svetunkov & Kourentzes, 2018, <doi: 10.13140/RG.2.2.24986.29123>),
Simple Moving Average (Svetunkov & Petropoulos, 2018 <doi: 10.1080/00207543.2017.1380326>)
and several simulation functions. It also allows dealing with intermittent demand based on the
iETS framework (Svetunkov & Boylan, 2019, <doi: 10.13140/RG.2.2.35897.06242>).
Author: Ivan Svetunkov [aut, cre]
Maintainer: Ivan Svetunkov <ivan@svetunkov.com>
Diff between smooth versions 4.1.0 dated 2024-10-01 and 4.1.1 dated 2025-02-03
DESCRIPTION | 10 - MD5 | 112 ++++++++-------- NAMESPACE | 1 NEWS | 15 ++ R/adam-sma.R | 2 R/adam.R | 52 +++++-- R/adamGeneral.R | 22 ++- R/methods.R | 6 R/msdecompose.R | 189 +++++++++++++++++++-------- R/smooth-package.R | 3 R/sowhat.R | 2 R/zzz.R | 8 - README.md | 2 inst/doc/adam.R | 70 +++++----- inst/doc/adam.Rmd | 74 +++++----- inst/doc/adam.html | 333 ++++++++++++++++++++++++------------------------- inst/doc/ces.html | 8 - inst/doc/es.html | 14 +- inst/doc/gum.html | 10 - inst/doc/oes.html | 116 ++++++++--------- inst/doc/simulate.html | 78 +++++------ inst/doc/sma.html | 12 - inst/doc/smooth.html | 4 inst/doc/ssarima.html | 26 +-- man/accuracy.Rd | 2 man/adam.Rd | 4 man/auto.ces.Rd | 2 man/auto.gum.Rd | 2 man/auto.ssarima.Rd | 2 man/ces.Rd | 2 man/cma.Rd | 2 man/es.Rd | 2 man/forecast.smooth.Rd | 2 man/gum.Rd | 2 man/isFunctions.Rd | 2 man/msarima.Rd | 2 man/msdecompose.Rd | 16 ++ man/multicov.Rd | 8 - man/oes.Rd | 2 man/oesg.Rd | 2 man/orders.Rd | 2 man/plot.smooth.Rd | 2 man/pls.Rd | 2 man/reapply.Rd | 2 man/rmultistep.Rd | 2 man/sim.ces.Rd | 2 man/sim.es.Rd | 2 man/sim.gum.Rd | 2 man/sim.oes.Rd | 2 man/sim.sma.Rd | 2 man/sim.ssarima.Rd | 2 man/sma.Rd | 2 man/smooth.Rd | 4 man/smoothCombine.Rd | 2 man/sowhat.Rd | 4 man/ssarima.Rd | 2 vignettes/adam.Rmd | 74 +++++----- 57 files changed, 732 insertions(+), 601 deletions(-)
Title: Sparse-Group SLOPE: Adaptive Bi-Level Selection with FDR Control
Description: Implementation of Sparse-group SLOPE (SGS) (Feser and Evangelou (2023) <doi:10.48550/arXiv.2305.09467>) models. Linear and logistic regression models are supported, both of which can be fit using k-fold cross-validation. Dense and sparse input matrices are supported. In addition, a general Adaptive Three Operator Splitting (ATOS) (Pedregosa and Gidel (2018) <doi:10.48550/arXiv.1804.02339>) implementation is provided. Group SLOPE (gSLOPE) (Brzyski et al. (2019) <doi:10.1080/01621459.2017.1411269>) and group-based OSCAR models (Feser and Evangelou (2024) <doi:10.48550/arXiv.2405.15357>) are also implemented. All models are available with strong screening rules (Feser and Evangelou (2024) <doi:10.48550/arXiv.2405.15357>) for computational speed-up.
Author: Fabio Feser [aut, cre]
Maintainer: Fabio Feser <ff120@ic.ac.uk>
Diff between sgs versions 0.3.2 dated 2024-11-28 and 0.3.3 dated 2025-02-03
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- R/atos.R | 4 ++-- R/fit_sgs.R | 2 +- R/run_algorithm.R | 8 ++++---- R/utils.R | 8 ++++---- inst/doc/reproducible_example.html | 12 ++++++------ man/fit_sgs.Rd | 2 +- 8 files changed, 29 insertions(+), 29 deletions(-)
Title: Information Preserving Regression-Based Tools for Statistical
Disclosure Control
Description: Implementation of the methods described in the paper with the above title: Langsrud, Ø. (2019) <doi:10.1007/s11222-018-9848-9>. The package can be used to generate synthetic or hybrid continuous microdata, and the relationship to the original data can be controlled in several ways. A function for replacing suppressed tabular cell frequencies with decimal numbers is included.
Author: Oeyvind Langsrud [aut, cre]
Maintainer: Oeyvind Langsrud <oyl@ssb.no>
Diff between RegSDC versions 0.7.0 dated 2022-08-19 and 1.0.0 dated 2025-02-03
DESCRIPTION | 17 +++++++++-------- MD5 | 10 +++++----- R/SuppressDec.R | 10 +++++----- man/ReduceX.Rd | 2 +- man/SuppressDec.Rd | 2 +- man/Z2Yhat.Rd | 4 ++-- 6 files changed, 23 insertions(+), 22 deletions(-)
Title: Local Regression, Likelihood and Density Estimation
Description: Local regression, likelihood and density estimation methods as described in the 1999 book by Loader.
Author: Catherine Loader [aut],
Jiayang Sun [ctb],
Lucent Technologies [cph],
Andy Liaw [cre]
Maintainer: Andy Liaw <andy_liaw@merck.com>
Diff between locfit versions 1.5-9.10 dated 2024-06-24 and 1.5-9.11 dated 2025-02-03
DESCRIPTION | 8 +-- MD5 | 108 ++++++++++++++++++++++++++--------------------------- src/S_enter.c | 71 ++++++++++++++++++++-------------- src/band.c | 64 +++++++++++++++---------------- src/dbinom.c | 52 +++++++------------------ src/dens_haz.c | 23 ++++------- src/dens_int.c | 27 ++++--------- src/dens_odi.c | 88 +++++++++++++++++++++---------------------- src/density.c | 50 +++++++----------------- src/ev_atree.c | 30 ++++---------- src/ev_interp.c | 57 ++++++++++------------------ src/ev_kdtre.c | 46 +++++++--------------- src/ev_main.c | 62 ++++++++++++------------------ src/ev_sphere.c | 15 ++----- src/ev_trian.c | 78 ++++++++++++++------------------------ src/family.c | 104 ++++++++++++++++++++------------------------------- src/fitted.c | 16 ++----- src/frend.c | 15 ++----- src/lf_adap.c | 41 +++++--------------- src/lf_dercor.c | 7 --- src/lf_fitfun.c | 35 +++++------------ src/lf_nbhd.c | 44 ++++++++++----------- src/lf_robust.c | 28 ++++++------- src/lf_vari.c | 24 +++++------ src/lf_wdiag.c | 31 ++++++--------- src/lffuns.h | 6 +- src/lfstr.c | 28 ++++++++----- src/locfit.c | 75 ++++++++++++++++++------------------ src/m_chol.c | 24 +++++------ src/m_eigen.c | 30 +++++++------- src/m_icirc.c | 18 ++++---- src/m_imont.c | 6 +- src/m_isimp.c | 36 ++++++++--------- src/m_isphr.c | 34 ++++++++-------- src/m_jacob.c | 30 +++++++------- src/m_max.c | 27 +++++++------ src/m_qr.c | 24 +++++------ src/m_solve.c | 23 ++++++----- src/m_svd.c | 26 ++++++++---- src/m_vector.c | 49 +++++++++++++----------- src/math.c | 38 +++++++++--------- src/minmax.c | 70 ++++++++++++++++++++-------------- src/mutil.h | 55 ++++++++++++++++++++------- src/pcomp.c | 62 +++++++++++++++++------------- src/preplot.c | 34 ++++++++-------- src/prob.c | 20 ++++----- src/procv.c | 40 +++++++++---------- src/scb.c | 44 ++++++++------------- src/scb_cons.c | 56 +++++++-------------------- src/scb_crit.c | 49 +++++++++--------------- src/scb_iface.c | 15 ++++--- src/simul.c | 48 +++++++---------------- src/smisc.c | 15 ++----- src/startlf.c | 41 ++++++++------------ src/weight.c | 114 +++++++++++++++++++++++--------------------------------- 55 files changed, 1045 insertions(+), 1216 deletions(-)
Title: Dual Feature Reduction for SGL
Description: Implementation of the Dual Feature Reduction (DFR) approach for the Sparse Group Lasso (SGL) and the Adaptive Sparse Group Lasso (aSGL) (Feser and Evangelou (2024) <doi:10.48550/arXiv.2405.17094>). The DFR approach is a feature reduction approach that applies strong screening to reduce the feature space before optimisation, leading to speed-up improvements for fitting SGL (Simon et al. (2013) <doi:10.1080/10618600.2012.681250>) and aSGL (Mendez-Civieta et al. (2020) <doi:10.1007/s11634-020-00413-8> and Poignard (2020) <doi:10.1007/s10463-018-0692-7>) models. DFR is implemented using the Adaptive Three Operator Splitting (ATOS) (Pedregosa and Gidel (2018) <doi:10.48550/arXiv.1804.02339>) algorithm, with linear and logistic SGL models supported, both of which can be fit using k-fold cross-validation. Dense and sparse input matrices are supported.
Author: Fabio Feser [aut, cre]
Maintainer: Fabio Feser <ff120@ic.ac.uk>
Diff between dfr versions 0.1.2 dated 2024-11-28 and 0.1.3 dated 2025-02-03
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/dfr_sgl.R | 2 +- man/dfr_sgl.Rd | 2 +- 4 files changed, 9 insertions(+), 9 deletions(-)
Title: Fast and Simple 'MongoDB' Client for R
Description: High-performance MongoDB client based on 'mongo-c-driver' and 'jsonlite'.
Includes support for aggregation, indexing, map-reduce, streaming, encryption,
enterprise authentication, and GridFS. The online user manual provides an overview
of the available methods in the package: <https://jeroen.github.io/mongolite/>.
Author: Jeroen Ooms [aut, cre] ,
MongoDB, Inc [cph]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>
Diff between mongolite versions 3.0.0 dated 2025-01-27 and 3.0.1 dated 2025-02-03
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS | 3 +++ configure | 11 ++--------- src/bson/bson-memory.c | 2 +- 5 files changed, 13 insertions(+), 17 deletions(-)
Title: Less Code, More Results
Description: Each function replaces multiple standard R functions. For example, two function calls, Read() and CountAll(), generate summary statistics for all variables in the data frame, plus histograms and bar charts as appropriate. Other functions provide for summary statistics via pivot tables, a comprehensive regression analysis, ANOVA and t-test, visualizations including the Violin/Box/Scatter plot for a numerical variable, bar chart, histogram, box plot, density curves, calibrated power curve, reading multiple data formats with the same function call, variable labels, time series with aggregation and forecasting, color themes, and Trellis (facet) graphics. Also includes a confirmatory factor analysis of multiple indicator measurement models, pedagogical routines for data simulation such as for the Central Limit Theorem, generation and rendering of regression instructions for interpretative output, and interactive visualizations.
Author: David W. Gerbing [aut, cre]
Maintainer: David W. Gerbing <gerbing@pdx.edu>
Diff between lessR versions 4.4.0 dated 2025-01-12 and 4.4.1 dated 2025-02-03
DESCRIPTION | 8 MD5 | 52 ++-- NEWS.md | 67 ++++- R/BarChart.R | 2 R/Density.R | 1 R/Histogram.R | 6 R/PieChart.R | 12 R/Plot.R | 297 ++++++++++++++---------- R/Regression.R | 22 + R/bc.data.frame.R | 14 - R/bc.main.R | 20 + R/dn.main.R | 15 - R/dpmat.main.R | 42 +-- R/hst.main.R | 61 ++--- R/plt.add.R | 3 R/plt.fit.R | 48 ++- R/plt.lattice.R | 154 +++++++++--- R/plt.main.R | 104 ++++---- R/plt.txt.R | 632 +++++++++++++++++++++------------------------------- R/print.outall.R | 16 - R/reg.5Plot.R | 75 +++--- R/regPlot.R | 12 R/zzz.R | 87 ++++--- inst/doc/intro.html | 38 +-- man/PieChart.Rd | 8 man/Plot.Rd | 58 ++-- man/Regression.Rd | 35 +- 27 files changed, 1025 insertions(+), 864 deletions(-)
Title: A Distributed Worker Launcher Framework
Description: In computationally demanding analysis projects,
statisticians and data scientists asynchronously
deploy long-running tasks to distributed systems,
ranging from traditional clusters to cloud services.
The 'NNG'-powered 'mirai' R package by Gao (2023)
<doi:10.5281/zenodo.7912722> is a sleek
and sophisticated scheduler that
efficiently processes these intense workloads.
The 'crew' package extends 'mirai' with a unifying
interface for third-party worker launchers.
Inspiration also comes from packages.
'future' by Bengtsson (2021) <doi:10.32614/RJ-2021-048>,
'rrq' by FitzJohn and Ashton (2023) <https://github.com/mrc-ide/rrq>,
'clustermq' by Schubert (2019) <doi:10.1093/bioinformatics/btz284>),
and 'batchtools' by Lang, Bischel, and Surmann (2017)
<doi:10.21105/joss.00135>.
Author: William Michael Landau [aut, cre]
,
Daniel Woodie [ctb],
Eli Lilly and Company [cph, fnd]
Maintainer: William Michael Landau <will.landau.oss@gmail.com>
Diff between crew versions 0.10.2 dated 2024-11-15 and 1.0.0 dated 2025-02-03
crew-0.10.2/crew/tests/local/test-backlog_crash.R |only crew-0.10.2/crew/tests/local/test-backlog_seconds_idle.R |only crew-0.10.2/crew/tests/local/test-backlog_tasks_max.R |only crew-0.10.2/crew/tests/local/test-crashes_error.R |only crew-1.0.0/crew/DESCRIPTION | 10 crew-1.0.0/crew/MD5 | 169 +- crew-1.0.0/crew/NAMESPACE | 6 crew-1.0.0/crew/NEWS.md | 15 crew-1.0.0/crew/R/class_monad.R | 126 - crew-1.0.0/crew/R/crew_assert.R | 11 crew-1.0.0/crew/R/crew_clean.R | 2 crew-1.0.0/crew/R/crew_client.R | 189 +- crew-1.0.0/crew/R/crew_controller.R | 906 +++++++----- crew-1.0.0/crew/R/crew_controller_group.R | 202 +- crew-1.0.0/crew/R/crew_controller_local.R | 40 crew-1.0.0/crew/R/crew_eval.R | 54 crew-1.0.0/crew/R/crew_launcher.R | 759 +++------- crew-1.0.0/crew/R/crew_launcher_local.R | 37 crew-1.0.0/crew/R/crew_options_metrics.R | 2 crew-1.0.0/crew/R/crew_package.R | 4 crew-1.0.0/crew/R/crew_queue.R |only crew-1.0.0/crew/R/crew_relay.R | 14 crew-1.0.0/crew/R/crew_retry.R | 65 crew-1.0.0/crew/R/crew_throttle.R | 180 ++ crew-1.0.0/crew/R/crew_tls.R | 17 crew-1.0.0/crew/R/crew_worker.R | 27 crew-1.0.0/crew/R/utils_logic.R | 2 crew-1.0.0/crew/R/utils_mirai.R | 83 - crew-1.0.0/crew/R/utils_names.R | 13 crew-1.0.0/crew/R/utils_nanonext.R |only crew-1.0.0/crew/inst/WORDLIST | 1 crew-1.0.0/crew/inst/doc/groups.Rmd | 121 + crew-1.0.0/crew/inst/doc/groups.html | 126 + crew-1.0.0/crew/inst/doc/introduction.Rmd | 169 +- crew-1.0.0/crew/inst/doc/introduction.html | 224 +- crew-1.0.0/crew/inst/doc/plugins.Rmd | 110 - crew-1.0.0/crew/inst/doc/plugins.html | 602 +++---- crew-1.0.0/crew/man/crew_class_client.Rd | 54 crew-1.0.0/crew/man/crew_class_controller.Rd | 214 +- crew-1.0.0/crew/man/crew_class_controller_group.Rd | 101 + crew-1.0.0/crew/man/crew_class_launcher.Rd | 470 +----- crew-1.0.0/crew/man/crew_class_launcher_local.Rd | 46 crew-1.0.0/crew/man/crew_class_queue.Rd |only crew-1.0.0/crew/man/crew_class_relay.Rd | 8 crew-1.0.0/crew/man/crew_class_throttle.Rd | 86 + crew-1.0.0/crew/man/crew_class_tls.Rd | 28 crew-1.0.0/crew/man/crew_clean.Rd | 2 crew-1.0.0/crew/man/crew_client.Rd | 24 crew-1.0.0/crew/man/crew_controller.Rd | 41 crew-1.0.0/crew/man/crew_controller_group.Rd | 7 crew-1.0.0/crew/man/crew_controller_local.Rd | 68 crew-1.0.0/crew/man/crew_eval.Rd | 7 crew-1.0.0/crew/man/crew_launcher.Rd | 40 crew-1.0.0/crew/man/crew_launcher_local.Rd | 36 crew-1.0.0/crew/man/crew_options_metrics.Rd | 2 crew-1.0.0/crew/man/crew_queue.Rd |only crew-1.0.0/crew/man/crew_retry.Rd | 6 crew-1.0.0/crew/man/crew_throttle.Rd | 41 crew-1.0.0/crew/man/crew_worker.Rd | 10 crew-1.0.0/crew/tests/local/test-cleanup.R | 2 crew-1.0.0/crew/tests/local/test-crew_clean.R | 2 crew-1.0.0/crew/tests/local/test-crew_relay.R | 8 crew-1.0.0/crew/tests/local/test-crew_throttle.R | 4 crew-1.0.0/crew/tests/local/test-launcher-system2.R | 38 crew-1.0.0/crew/tests/local/test-long_seconds_idle.R |only crew-1.0.0/crew/tests/local/test-long_tasks_max.R |only crew-1.0.0/crew/tests/local/test-map.R | 14 crew-1.0.0/crew/tests/local/test-persistent-autoscale.R | 11 crew-1.0.0/crew/tests/local/test-transient.R | 22 crew-1.0.0/crew/tests/local/test-wait.R | 5 crew-1.0.0/crew/tests/testthat.R | 4 crew-1.0.0/crew/tests/testthat/test-class_monad.R | 35 crew-1.0.0/crew/tests/testthat/test-crew_async.R | 2 crew-1.0.0/crew/tests/testthat/test-crew_client.R | 56 crew-1.0.0/crew/tests/testthat/test-crew_controller.R | 364 +++- crew-1.0.0/crew/tests/testthat/test-crew_controller_group.R | 314 +++- crew-1.0.0/crew/tests/testthat/test-crew_controller_local.R | 140 + crew-1.0.0/crew/tests/testthat/test-crew_eval.R | 73 crew-1.0.0/crew/tests/testthat/test-crew_launcher.R | 361 ++-- crew-1.0.0/crew/tests/testthat/test-crew_launcher_local.R | 203 -- crew-1.0.0/crew/tests/testthat/test-crew_queue.R |only crew-1.0.0/crew/tests/testthat/test-crew_relay.R | 5 crew-1.0.0/crew/tests/testthat/test-crew_throttle.R | 93 + crew-1.0.0/crew/tests/testthat/test-crew_tls.R | 33 crew-1.0.0/crew/tests/testthat/test-crew_worker.R | 104 - crew-1.0.0/crew/tests/testthat/test-plugins.R | 305 +++- crew-1.0.0/crew/tests/testthat/test-utils_mirai.R | 85 + crew-1.0.0/crew/tests/testthat/test-utils_names.R | 20 crew-1.0.0/crew/vignettes/groups.Rmd | 121 + crew-1.0.0/crew/vignettes/introduction.Rmd | 169 +- crew-1.0.0/crew/vignettes/plugins.Rmd | 110 - 91 files changed, 4765 insertions(+), 3515 deletions(-)
Title: Long-Short Term Memory for Time-Series Forecasting, Enhanced
Description: The LSTM (Long Short-Term Memory) model is a Recurrent Neural Network (RNN) based architecture that is widely used for time series forecasting. Customizable configurations for the model are allowed, improving the capabilities and usability of this model compared to other packages. This package is based on 'keras' and 'tensorflow' modules and the algorithm of Paul and Garai (2021) <doi:10.1007/s00500-021-06087-4>.
Author: Jaime Pizarroso Gonzalo [aut, ctb, cre],
Antonio Munoz San Roque [aut]
Maintainer: Jaime Pizarroso Gonzalo <jpizarroso@comillas.edu>
Diff between TSLSTMplus versions 1.0.5 dated 2024-09-06 and 1.0.6 dated 2025-02-03
DESCRIPTION | 12 ++++++------ MD5 | 7 ++++--- NAMESPACE | 2 +- R/TSLSTM.R | 44 +++++++++++++++++++++++++++++++++++++++++++- man/lagmatrix.Rd |only 5 files changed, 54 insertions(+), 11 deletions(-)
Title: Optimising Random Forest Stability by Determining the Optimal
Number of Trees
Description: Calculating the stability of random forest with certain numbers of trees. The non-linear relationship between stability and numbers of trees is described using a logistic regression model and used to estimate the optimal number of trees.
Author: Thomas Martin Lange [cre, aut]
,
Felix Heinrich [ctb]
Maintainer: Thomas Martin Lange <thomas.lange@uni-goettingen.de>
Diff between optRF versions 1.0.1 dated 2024-09-23 and 1.1.0 dated 2025-02-03
DESCRIPTION | 39 - MD5 | 59 +- NEWS.md |only R/SNPdata.R | 46 - R/estimate_numtrees.R | 251 ++++------ R/estimate_stability.R | 179 +++---- R/opt_importance.R | 797 +++++++++++++------------------- R/opt_prediction.R | 941 ++++++++++++++++---------------------- R/plot.opt_importance_object.R | 5 R/plot.opt_prediction_object.R | 5 R/plot_stability.R | 261 +++++----- R/summary.opt_importance_object.R | 6 R/summary.opt_prediction_object.R | 7 R/utils.R |only README.md |only build |only data/SNPdata.rda |binary inst |only man/SNPdata.Rd | 4 man/estimate_numtrees.Rd | 2 man/estimate_stability.Rd | 2 man/opt_importance.Rd | 18 man/opt_prediction.Rd | 15 man/plot_stability.Rd | 2 vignettes |only 25 files changed, 1207 insertions(+), 1432 deletions(-)
Title: Toolkit for Encryption, Signatures and Certificates Based on
OpenSSL
Description: Bindings to OpenSSL libssl and libcrypto, plus custom SSH key parsers.
Supports RSA, DSA and EC curves P-256, P-384, P-521, and curve25519. Cryptographic
signatures can either be created and verified manually or via x509 certificates.
AES can be used in cbc, ctr or gcm mode for symmetric encryption; RSA for asymmetric
(public key) encryption or EC for Diffie Hellman. High-level envelope functions
combine RSA and AES for encrypting arbitrary sized data. Other utilities include key
generators, hash functions (md5, sha1, sha256, etc), base64 encoder, a secure random
number generator, and 'bignum' math methods for manually performing crypto
calculations on large multibyte integers.
Author: Jeroen Ooms [aut, cre] ,
Oliver Keyes [ctb]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>
Diff between openssl versions 2.3.1 dated 2025-01-09 and 2.3.2 dated 2025-02-03
DESCRIPTION | 6 ++--- MD5 | 18 ++++++++-------- NEWS | 4 +++ inst/doc/bignum.html | 32 ++++++++++++++-------------- inst/doc/crypto_hashing.html | 4 +-- inst/doc/keys.html | 48 +++++++++++++++++++++---------------------- inst/doc/secure_rng.html | 18 ++++++++-------- src/Makevars.win | 2 - src/onload.c | 5 ---- tools/winlibs.R | 6 ++--- 10 files changed, 71 insertions(+), 72 deletions(-)
Title: Easily Access and Maintain Time-Based Versioned Data
(Slowly-Changing-Dimension)
Description: A collection of functions that enable easy access and updating of a database of data over time.
More specifically, the package facilitates type-2 history for data-warehouses and provides a number
of Quality of life improvements for working on SQL databases with R.
For reference see Ralph Kimball and Margy Ross (2013, ISBN 9781118530801).
Author: Rasmus Skytte Randloev [aut, cre, rev]
,
Marcus Munch Gruenewald [aut] ,
Lasse Engbo Christiansen [rev]
,
Sofia Myrup Otero [rev],
Statens Serum Institut [cph, fnd]
Maintainer: Rasmus Skytte Randloev <rske@ssi.dk>
Diff between SCDB versions 0.4.1 dated 2024-10-03 and 0.5.0 dated 2025-02-03
SCDB-0.4.1/SCDB/R/0_linters.R |only SCDB-0.4.1/SCDB/tests/testthat/test-0_linters.R |only SCDB-0.4.1/SCDB/tests/testthat/test-0_rd_files.R |only SCDB-0.5.0/SCDB/DESCRIPTION | 18 SCDB-0.5.0/SCDB/MD5 | 123 +- SCDB-0.5.0/SCDB/NAMESPACE | 7 SCDB-0.5.0/SCDB/NEWS.md | 29 SCDB-0.5.0/SCDB/R/0_miscellaneous.R |only SCDB-0.5.0/SCDB/R/Logger.R | 33 SCDB-0.5.0/SCDB/R/connection.R | 32 SCDB-0.5.0/SCDB/R/create_index.R |only SCDB-0.5.0/SCDB/R/create_table.R | 14 SCDB-0.5.0/SCDB/R/db_joins.R | 134 +- SCDB-0.5.0/SCDB/R/digest_to_checksum.R | 34 SCDB-0.5.0/SCDB/R/filter_keys.R | 10 SCDB-0.5.0/SCDB/R/get_tables.R | 64 - SCDB-0.5.0/SCDB/R/helpers.R | 18 SCDB-0.5.0/SCDB/R/id.R | 10 SCDB-0.5.0/SCDB/R/interlace.R | 86 - SCDB-0.5.0/SCDB/R/locks.R | 2 SCDB-0.5.0/SCDB/R/schema_exists.R | 4 SCDB-0.5.0/SCDB/R/slice_time.R | 4 SCDB-0.5.0/SCDB/R/table_exists.R | 10 SCDB-0.5.0/SCDB/R/unite.tbl_dbi.R | 10 SCDB-0.5.0/SCDB/R/update_snapshot.R | 271 +++-- SCDB-0.5.0/SCDB/R/utils-pipe.R |only SCDB-0.5.0/SCDB/build/vignette.rds |binary SCDB-0.5.0/SCDB/inst/WORDLIST | 6 SCDB-0.5.0/SCDB/inst/doc/SCDB.R | 44 SCDB-0.5.0/SCDB/inst/doc/SCDB.Rmd | 74 - SCDB-0.5.0/SCDB/inst/doc/SCDB.html | 249 ++--- SCDB-0.5.0/SCDB/inst/doc/benchmarks.R |only SCDB-0.5.0/SCDB/inst/doc/benchmarks.Rmd |only SCDB-0.5.0/SCDB/inst/doc/benchmarks.html |only SCDB-0.5.0/SCDB/inst/doc/slowly-changing-dimension.R | 277 +++--- SCDB-0.5.0/SCDB/inst/doc/slowly-changing-dimension.Rmd | 506 +++++------ SCDB-0.5.0/SCDB/inst/doc/slowly-changing-dimension.html | 145 ++- SCDB-0.5.0/SCDB/inst/extdata |only SCDB-0.5.0/SCDB/man/SCDB-package.Rd | 1 SCDB-0.5.0/SCDB/man/create_index.Rd |only SCDB-0.5.0/SCDB/man/interlace.Rd | 13 SCDB-0.5.0/SCDB/man/joins.Rd | 6 SCDB-0.5.0/SCDB/man/pipe.Rd |only SCDB-0.5.0/SCDB/man/slice_time.Rd | 2 SCDB-0.5.0/SCDB/man/unique_table_name.Rd | 8 SCDB-0.5.0/SCDB/man/unite.tbl_dbi.Rd | 4 SCDB-0.5.0/SCDB/tests/spelling.R | 10 SCDB-0.5.0/SCDB/tests/testthat/helper-setup.R | 101 +- SCDB-0.5.0/SCDB/tests/testthat/setup.R | 16 SCDB-0.5.0/SCDB/tests/testthat/test-Logger.R | 50 - SCDB-0.5.0/SCDB/tests/testthat/test-connection.R | 6 SCDB-0.5.0/SCDB/tests/testthat/test-create_logs_if_missing.R | 8 SCDB-0.5.0/SCDB/tests/testthat/test-create_table.R | 16 SCDB-0.5.0/SCDB/tests/testthat/test-db_joins.R | 187 ++-- SCDB-0.5.0/SCDB/tests/testthat/test-digest_to_checksum.R | 32 SCDB-0.5.0/SCDB/tests/testthat/test-filter_keys.R | 64 - SCDB-0.5.0/SCDB/tests/testthat/test-getTableSignature.R | 2 SCDB-0.5.0/SCDB/tests/testthat/test-get_table.R | 20 SCDB-0.5.0/SCDB/tests/testthat/test-get_tables.R | 16 SCDB-0.5.0/SCDB/tests/testthat/test-helpers.R | 28 SCDB-0.5.0/SCDB/tests/testthat/test-id.R | 4 SCDB-0.5.0/SCDB/tests/testthat/test-interlace.R | 16 SCDB-0.5.0/SCDB/tests/testthat/test-locks.R | 10 SCDB-0.5.0/SCDB/tests/testthat/test-slice_time.R | 16 SCDB-0.5.0/SCDB/tests/testthat/test-unite.tbl_dbi.R | 58 - SCDB-0.5.0/SCDB/tests/testthat/test-update_snapshot.R | 475 +++++++--- SCDB-0.5.0/SCDB/vignettes/SCDB.Rmd | 74 - SCDB-0.5.0/SCDB/vignettes/benchmarks.Rmd |only SCDB-0.5.0/SCDB/vignettes/slowly-changing-dimension.Rmd | 506 +++++------ 69 files changed, 2297 insertions(+), 1666 deletions(-)
Title: Extended Mixed Models Using Latent Classes and Latent Processes
Description: Estimation of various extensions of the mixed models including latent class mixed models, joint latent class mixed models, mixed models for curvilinear outcomes, mixed models for multivariate longitudinal outcomes using a maximum likelihood estimation method (Proust-Lima, Philipps, Liquet (2017) <doi:10.18637/jss.v078.i02>).
Author: Cecile Proust-Lima [aut, cre],
Viviane Philipps [aut],
Amadou Diakite [ctb],
Benoit Liquet [ctb],
Alan Genz [ctb] ,
John Burkardt [ctb]
Maintainer: Cecile Proust-Lima <cecile.proust-lima@inserm.fr>
Diff between lcmm versions 2.1.0 dated 2023-10-06 and 2.2.0 dated 2025-02-03
DESCRIPTION | 20 MD5 | 82 +- NAMESPACE | 3 NEWS.md | 7 R/Jointlcmm.R | 20 R/externVar.R | 1515 +++++++++++++++++++++++++------------------------ R/hlme.R | 7 R/lcmm-package.R | 6 R/lcmm.R | 14 R/mpjlcmm.R | 5 R/multlcmm.R | 34 - R/permut.R | 32 + R/predictClass.R | 3 R/predictYback.R |only R/print.lcmm.R | 2 R/summary.externSurv.R | 229 +++---- R/summary.externX.R | 20 R/summary.hlme.R | 649 ++++++++++---------- R/summary.lcmm.R | 15 R/summary.multlcmm.R | 12 R/summaryplot.R | 4 R/summarytable.R | 4 README.md | 2 build/partial.rdb |binary build/vignette.rds |binary inst/COPYRIGHTS |only inst/doc/lcmm.R | 2 man/Jointlcmm.Rd | 18 man/externVar.Rd | 195 +++--- man/hlme.Rd | 7 man/lcmm-package.Rd | 9 man/lcmm.Rd | 14 man/mpjlcmm.Rd | 2 man/multlcmm.Rd | 22 man/predictYback.Rd |only man/print.lcmm.Rd | 2 man/summary.lcmm.Rd | 2 man/summaryplot.Rd | 4 man/summarytable.Rd | 4 src/Integ.f90 |only src/Makevars | 3 src/init.c | 1 src/lcmm.h | 19 src/mpjhet.f90 | 4 44 files changed, 1609 insertions(+), 1384 deletions(-)
Title: Remote Sensing Data Analysis
Description: Toolbox for remote sensing image processing and analysis such as
calculating spectral indexes, principal component transformation, unsupervised
and supervised classification or fractional cover analyses.
Author: Benjamin Leutner [aut] ,
Ned Horning [aut],
Jakob Schwalb-Willmann [aut] ,
Robert J. Hijmans [ctb] ,
Konstantin Mueller [aut, cre]
Maintainer: Konstantin Mueller <konstantinfinn.mueller@gmx.de>
Diff between RStoolbox versions 1.0.1 dated 2025-02-01 and 1.0.2.1 dated 2025-02-03
RStoolbox-1.0.1/RStoolbox/src/tinyexpr.c |only RStoolbox-1.0.1/RStoolbox/src/tinyexpr.h |only RStoolbox-1.0.2.1/RStoolbox/DESCRIPTION | 8 RStoolbox-1.0.2.1/RStoolbox/MD5 | 14 RStoolbox-1.0.2.1/RStoolbox/NEWS.md | 6 RStoolbox-1.0.2.1/RStoolbox/R/spectralIndices.R | 7 RStoolbox-1.0.2.1/RStoolbox/man/spectralIndices.Rd | 27 + RStoolbox-1.0.2.1/RStoolbox/src/spectralIndices.cpp | 188 +++++++--- RStoolbox-1.0.2.1/RStoolbox/tests/testthat/test-spectralIndices.R | 19 + 9 files changed, 214 insertions(+), 55 deletions(-)
Title: Analysis of Heavy Tailed Distributions
Description: An implementation of maximum likelihood estimators for a
variety of heavy tailed distributions, including both the discrete and
continuous power law distributions. Additionally, a goodness-of-fit
based approach is used to estimate the lower cut-off for the scaling
region.
Author: Colin Gillespie [aut, cre]
Maintainer: Colin Gillespie <csgillespie@gmail.com>
Diff between poweRlaw versions 0.80.0 dated 2024-01-25 and 1.0.0 dated 2025-02-03
DESCRIPTION | 27 ++++----- MD5 | 83 ++++++++++++++------------- NAMESPACE | 15 ----- NEWS.md | 13 ++-- R/bootstrap.R | 4 - R/bootstrap_p.R | 18 +++--- R/compare_distributions.R | 7 +- R/conlnorm.R | 6 +- R/data_help_files.R | 2 R/def_conweibull.R | 2 R/def_dislnorm.R | 3 + R/def_displ.R | 5 - R/def_dispois.R | 17 ++--- R/estimate_xmin.R | 6 -- R/lines_methods.R | 6 -- R/plcon.R | 4 - R/pldis.R | 6 +- R/plot_methods.R | 18 ++---- R/powerlaw-package.R | 1 R/show_methods.R | 4 - README.md | 13 +++- build/vignette.rds |binary demo/moby.R | 6 +- inst/WORDLIST |only inst/doc/a_introduction.pdf |binary inst/doc/b_powerlaw_examples.pdf |binary inst/doc/c_comparing_distributions.pdf |binary inst/doc/d_jss_paper.pdf |binary man/bootstrap_moby.Rd | 2 man/compare_distributions.Rd | 2 man/displ.Rd | 3 + man/dplcon.Rd | 4 - man/estimate_xmin.Rd | 4 - man/plot-distribution-method.Rd | 2 man/poweRlaw-package.Rd | 1 tests/testthat/test_compare_distributions.R | 16 ++--- tests/testthat/test_dist_cdf.R | 84 ++++++++++++++-------------- tests/testthat/test_dist_data_cdf.R | 29 ++++----- tests/testthat/test_dist_ll.R | 26 ++++---- tests/testthat/test_estimate_pars.R | 24 ++++---- tests/testthat/test_estimate_xmin.R | 32 +++++----- tests/testthat/test_get_sims.R | 8 +- tests/testthat/test_plot.R | 36 ++++++------ 43 files changed, 263 insertions(+), 276 deletions(-)
Title: Classification Evaluation Metrics
Description: A fast, robust and easy-to-use calculation
of multi-class classification evaluation metrics based on confusion matrix.
Author: G. Dudnik [aut, cre, cph]
Maintainer: G. Dudnik <gl.dudnik@gmail.com>
Diff between mltest versions 1.0.2 dated 2025-02-02 and 1.0.3 dated 2025-02-03
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ NEWS.md | 10 +++++++++- R/ml_test.R | 50 +++++++++++++++++++++++++------------------------- build/partial.rdb |binary inst/CITATION | 3 ++- man/ml_test.Rd | 50 +++++++++++++++++++++++++------------------------- 7 files changed, 70 insertions(+), 61 deletions(-)
Title: SDTM Datacut
Description: Supports the process of applying a cut to Standard Data Tabulation Model (SDTM),
as part of the analysis of specific points in time of the data, normally as part of
investigation into clinical trials. The functions support different approaches of
cutting to the different domains of SDTM normally observed.
Author: Tim Barnett [cph, aut, cre],
Nathan Rees [aut],
Alana Harris [aut],
Cara Andrews [aut]
Maintainer: Tim Barnett <timothy.barnett@roche.com>
Diff between datacutr versions 0.2.2 dated 2025-01-10 and 0.2.3 dated 2025-02-03
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 5 +++++ R/read_out.R | 4 +++- inst/doc/variable_cut.html | 24 ++++++++++++------------ 5 files changed, 27 insertions(+), 20 deletions(-)
Title: 3D Software Rasterizer
Description: Rasterize images using a 3D software renderer. 3D scenes are created either by importing external files, building scenes out of the included objects, or by constructing meshes manually. Supports point and directional lights, anti-aliased lines, shadow mapping, transparent objects, translucent objects, multiple materials types, reflection, refraction, environment maps, multicore rendering, bloom, tone-mapping, and screen-space ambient occlusion.
Author: Tyler Morgan-Wall [aut, cph, cre]
,
Syoyo Fujita [ctb, cph],
Vilya Harvey [ctb, cph],
G-Truc Creation [ctb, cph],
Sean Barrett [ctb, cph]
Maintainer: Tyler Morgan-Wall <tylermw@gmail.com>
Diff between rayvertex versions 0.11.4 dated 2024-07-22 and 0.12.0 dated 2025-02-03
DESCRIPTION | 14 ++--- MD5 | 20 +++---- R/objects.R | 118 ++++++++++++++++++++++++++-------------------- R/zzz.R | 2 inst/extdata/xy_plane.txt | 6 +- inst/extdata/yz_plane.txt | 2 man/text3d_mesh.Rd | 66 +++++++++++++++++++------ src/glm/detail/glm.cpp | 23 ++++++++ src/glm/glm.hpp | 23 ++++++++ src/load_obj.cpp | 17 +++++- src/load_ply.cpp | 17 +++++- 11 files changed, 214 insertions(+), 94 deletions(-)
Title: A Collection of R Functions by the Petersen Lab
Description: A collection of R functions that are widely used by the Petersen
Lab. Included are functions for various purposes, including evaluating the
accuracy of judgments and predictions, performing scoring of assessments,
generating correlation matrices, conversion of data between various types,
data management, psychometric evaluation, extensions related to latent
variable modeling, various plotting capabilities, and other miscellaneous
useful functions. By making the package available, we hope to make our
methods reproducible and replicable by others and to help others perform
their data processing and analysis methods more easily and efficiently. The
codebase is provided in Petersen (2024) <doi:10.5281/zenodo.7602890> and on
CRAN: <doi: 10.32614/CRAN.package.petersenlab>. The package is described in
"Principles of Psychological Assessment: With Applied Examples in R"
(Petersen, 2024, 2025) <doi:10.1201/9781003357421>,
<doi:10.25820/work.007199>, <doi:10.5281/zenod [...truncated...]
Author: Isaac T. Petersen [aut, cre] ,
Developmental Psychopathology Lab at the University of Iowa [ctb],
Angela D. Staples [ctb] ,
Johanna Caskey [ctb] ,
Philipp Doebler [ctb] ,
Loreen Sabel [ctb]
Maintainer: Isaac T. Petersen <isaac-t-petersen@uiowa.edu>
Diff between petersenlab versions 1.0.0 dated 2024-04-30 and 1.1.0 dated 2025-02-03
DESCRIPTION | 41 +- MD5 | 109 +++-- NAMESPACE | 42 ++ R/accuracyOverall.R | 52 ++ R/apa.R |only R/cleanUpNames.R |only R/convert.magic.R | 2 R/frequencyPerDuration.R | 18 R/itemInformationZINB.R |only R/my_loadings_sorter.R |only R/nomogrammer.R | 104 ++++- R/pValues.R | 2 R/posttestOddsProbability.R |only R/recodeIntensity.R | 5 R/semPlotInteraction.R |only R/specifyDecimals.R | 2 R/suppressLeadingZero.R | 2 R/testInformation.R |only R/varsDifferentTypes.R |only R/weightedQuantile.R |only README.md | 20 - inst/CITATION | 6 man/Mode.Rd | 93 ++--- man/accuracyAtCutoff.Rd | 3 man/accuracyAtEachCutoff.Rd | 3 man/accuracyOverall.Rd | 7 man/addText.Rd | 1 man/apa.Rd |only man/bayesTheorem.Rd | 4 man/cleanUpNames.Rd |only man/columnBindFill.Rd | 3 man/convert.magic.Rd | 5 man/discriminationToFactorLoading.Rd | 4 man/dropColsWithAllNA.Rd | 109 ++--- man/dropRowsWithAllNA.Rd | 105 ++--- man/equiv_chi.Rd | 3 man/figures |only man/fourPL.Rd | 4 man/frequencyPerDuration.Rd | 20 - man/itemInformation.Rd | 4 man/itemInformationZINB.Rd |only man/lmCombine.Rd | 1 man/make_esem_model.Rd | 3 man/meanSum.Rd | 71 +-- man/mySum.Rd | 75 ++-- man/my_loadings_sorter.Rd |only man/nomogrammer.Rd | 221 ++++++------ man/optimalCutoff.Rd | 3 man/pValue.Rd | 7 man/plot2WayInteraction.Rd | 2 man/posttest.Rd |only man/ppPlot.Rd | 2 man/puc.Rd | 3 man/recodeBehaviorIntensity.Rd | 5 man/reliabilityIRT.Rd | 4 man/satorraBentlerScaledChiSquareDifferenceTestStatistic.Rd | 3 man/semPlotInteraction.Rd |only man/specify_decimal.Rd | 7 man/standardErrorIRT.Rd | 4 man/suppressLeadingZero.Rd | 7 man/testInformation.Rd |only man/update_nested.Rd | 3 man/varsDifferentTypes.Rd |only man/vwReg.Rd | 3 man/weightedQuantile.Rd |only 65 files changed, 754 insertions(+), 443 deletions(-)
Title: Ordered Correlation Forest
Description: Machine learning estimator specifically optimized for predictive modeling of ordered non-numeric outcomes. 'ocf' provides forest-based estimation of the
conditional choice probabilities and the covariates’ marginal effects. Under an "honesty" condition, the estimates are consistent and asymptotically normal
and standard errors can be obtained by leveraging the weight-based representation of the random forest predictions. Please reference the use as Di Francesco (2025)
<doi:10.1080/07474938.2024.2429596>.
Author: Riccardo Di Francesco [aut, cre, cph]
Maintainer: Riccardo Di Francesco <difrancesco.riccardo96@gmail.com>
Diff between ocf versions 1.0.1 dated 2024-09-25 and 1.0.3 dated 2025-02-03
DESCRIPTION | 15 +- MD5 | 62 +++++------ NAMESPACE | 6 + NEWS.md | 13 ++ R/checks.R | 5 R/generic-s3.R | 119 ++++++++++++++++++++- R/marginal-effects.R | 82 ++++++++------- R/multinomial-ml.R | 2 R/ocf.R | 9 - R/ordered-ml.R | 2 R/utils.R | 4 README.md | 14 +- build/partial.rdb |only build/vignette.rds |binary inst/doc/ocf-short-tutorial.R | 13 ++ inst/doc/ocf-short-tutorial.Rmd | 18 ++- inst/doc/ocf-short-tutorial.html | 211 +++++++++++++++++++++------------------ man/generate_ordered_data.Rd | 2 man/marginal_effects.Rd | 21 ++- man/multinomial_ml.Rd | 2 man/ocf.Rd | 9 - man/ordered_ml.Rd | 2 man/plot.ocf.marginal.Rd |only man/predict.mml.Rd | 2 man/predict.ocf.Rd | 2 man/predict.ocf.forest.Rd | 2 man/predict.oml.Rd | 2 man/print.ocf.Rd | 2 man/print.ocf.marginal.Rd | 4 man/summary.ocf.Rd | 2 man/summary.ocf.marginal.Rd | 2 man/tree_info.Rd | 2 vignettes/ocf-short-tutorial.Rmd | 18 ++- 33 files changed, 425 insertions(+), 224 deletions(-)
Title: Nested Data Summary, Adverse Events and REDCap
Description: Tools and code snippets for summarizing nested data, adverse events
and REDCap study information.
Author: Lisa Avery [aut] ,
Zeynep Baskurt [aut],
Osvaldo Espin-Garcia [aut],
Katrina Hueniken [aut],
Katherine Lajkosz [aut] ,
Xuan Li [aut],
Tyler Pittman [cre, aut] ,
Anna Santiago [aut] ,
Jessica Weiss [aut],
Wei Xu [aut]
Maintainer: Tyler Pittman <tyler.pittman@uhn.ca>
Diff between BiostatsUHNplus versions 1.0.1 dated 2024-12-06 and 1.0.2 dated 2025-02-03
DESCRIPTION | 6 MD5 | 74 +-- NEWS.md | 4 R/ae_timeline_plot.R | 20 - R/covsum_nested.R | 4 R/dsmb_ccru.R | 2 R/redcap_data_out.R | 21 - README.md | 193 +--------- man/ae_timeline_plot.Rd | 20 - man/covsum_nested.Rd | 2 man/dsmb_ccru.Rd | 2 man/figures/ae_category_attribStart_timeline_plot.png |binary man/figures/ae_category_timeline_plot.png |binary man/figures/ae_detail_timeline_plot.png |binary man/figures/ana10-1.png |binary man/figures/caterpillar_plot_Cows_Model.png |binary man/figures/caterpillar_plot_Yards_Model.png |binary man/figures/caterpillar_plot_ae_category.png |binary man/figures/caterpillar_plot_subject.png |binary man/figures/variance_pie_plot.png |binary man/redcap_data_out.Rd | 8 man/rm_covsum_nested.Rd | 2 man/tables/ae_detail_EXAMPLE_STUDY_Cohort_A_30OCT2020.xlsx |binary man/tables/ae_detail_EXAMPLE_STUDY_Cohort_B_30OCT2020.xlsx |binary man/tables/ae_detail_EXAMPLE_STUDY_Cohort_C_30OCT2020.xlsx |binary man/tables/ae_detail_EXAMPLE_STUDY_Cohort_D_30OCT2020.xlsx |binary man/tables/ae_detail_EXAMPLE_STUDY__30OCT2020.xlsx |binary man/tables/category_ByEvent_EXAMPLE_STUDY_Cohort_A_30OCT2020.xlsx |binary man/tables/category_ByEvent_EXAMPLE_STUDY_Cohort_B_30OCT2020.xlsx |binary man/tables/category_ByEvent_EXAMPLE_STUDY_Cohort_C_30OCT2020.xlsx |binary man/tables/category_ByEvent_EXAMPLE_STUDY_Cohort_D_30OCT2020.xlsx |binary man/tables/category_ByEvent_EXAMPLE_STUDY__30OCT2020.xlsx |binary man/tables/category_BySubject_EXAMPLE_STUDY_Cohort_A_30OCT2020.xlsx |binary man/tables/category_BySubject_EXAMPLE_STUDY_Cohort_B_30OCT2020.xlsx |binary man/tables/category_BySubject_EXAMPLE_STUDY_Cohort_C_30OCT2020.xlsx |binary man/tables/category_BySubject_EXAMPLE_STUDY_Cohort_D_30OCT2020.xlsx |binary man/tables/category_BySubject_EXAMPLE_STUDY__30OCT2020.xlsx |binary tests/testthat/test_calculations.R | 18 38 files changed, 127 insertions(+), 249 deletions(-)
More information about BiostatsUHNplus at CRAN
Permanent link
Title: Quick and Essential 'R' Tricks for Better Scripts
Description: The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to improve your scripts. Improve the quality and reproducibility of 'R' scripts.
Author: Obinna Obianom [aut, cre],
Brice Richard [aut]
Maintainer: Obinna Obianom <idonshayo@gmail.com>
Diff between quickcode versions 1.0.4 dated 2025-01-14 and 1.0.5 dated 2025-02-03
quickcode-1.0.4/quickcode/R/mult.R |only quickcode-1.0.4/quickcode/R/randomImage.R |only quickcode-1.0.4/quickcode/man/genRandImg.Rd |only quickcode-1.0.4/quickcode/man/multiply.Rd |only quickcode-1.0.4/quickcode/man/sort_length.Rd |only quickcode-1.0.5/quickcode/DESCRIPTION | 6 - quickcode-1.0.5/quickcode/MD5 | 32 ++--- quickcode-1.0.5/quickcode/NAMESPACE | 6 - quickcode-1.0.5/quickcode/NEWS.md | 6 + quickcode-1.0.5/quickcode/R/0.7_combo_func1.R | 4 quickcode-1.0.5/quickcode/R/categorical_to_numeric.R |only quickcode-1.0.5/quickcode/R/clean.R | 4 quickcode-1.0.5/quickcode/R/func_chain.R | 4 quickcode-1.0.5/quickcode/R/sort.R | 38 ++++++- quickcode-1.0.5/quickcode/inst/doc/add_today_date_to_filenames_quickcode.html | 54 +++++----- quickcode-1.0.5/quickcode/inst/doc/nullish_coalescing_operator_r.html | 4 quickcode-1.0.5/quickcode/inst/doc/quickcode_r_introduction.html | 4 quickcode-1.0.5/quickcode/inst/doc/track_function_usage_r.html | 4 quickcode-1.0.5/quickcode/man/categorical_to_numeric.Rd |only quickcode-1.0.5/quickcode/man/clearenvironment.Rd | 3 quickcode-1.0.5/quickcode/man/sort-additives.Rd |only 21 files changed, 106 insertions(+), 63 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-10-22 2.3.2
2024-05-29 2.3.1
2024-04-08 2.3
2023-08-24 2.2
2023-03-22 2.1
2023-01-06 2.0
2022-12-09 1.12
2022-10-04 1.11
2022-01-04 1.9
2021-12-21 1.8.4
2021-09-07 1.8.2
2021-05-04 1.8.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-12-11 1.2.6
2023-12-09 1.2.5
2018-01-23 1.2.4
2018-01-07 1.2.3
2017-10-17 1.2.2
2016-07-21 1.2.1
2016-07-17 1.2
2016-07-10 1.1.1
2016-01-25 1.1
2015-12-07 1.0
Title: Ace Editor Bindings for Shiny
Description: Ace editor bindings to enable a rich text editing environment
within Shiny.
Author: Vincent Nijs [aut, cre],
Forest Fang [aut],
Trestle Technology, LLC [aut],
Jeff Allen [aut],
Institut de Radioprotection et de Surete Nucleaire [cph],
Ajax.org B.V. [ctb, cph]
Maintainer: Vincent Nijs <radiant@rady.ucsd.edu>
Diff between shinyAce versions 0.4.3 dated 2024-10-18 and 0.4.4 dated 2025-02-02
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NEWS.md | 5 +++++ inst/www/ace/mode-handlebars.js | 9 ++++++++- inst/www/ace/snippets/handlebars.js | 9 ++++++++- 5 files changed, 29 insertions(+), 10 deletions(-)
Title: Probability Theory for Selecting Candidates in Plant Breeding
Description: Use probability theory under the Bayesian framework for calculating the risk of selecting candidates in a multi-environment context. Contained are functions used to fit a Bayesian multi-environment model (based on the available presets), extract posterior values and maximum posterior values, compute the variance components, check the model’s convergence, and calculate the probabilities. For both across and within-environments scopes, the package computes the probability of superior performance and the pairwise probability of superior performance. Furthermore, the probability of superior stability and the pairwise probability of superior stability across environments is estimated. A joint probability of superior performance and stability is also provided.
Author: Saulo Chaves [aut, cre] ,
Kaio Dias [aut, cph] ,
Matheus Krause [aut]
Maintainer: Saulo Chaves <saulo.chaves@ufv.br>
Diff between ProbBreed versions 1.0.4.4 dated 2024-11-10 and 1.0.4.5 dated 2025-02-02
DESCRIPTION | 6 MD5 | 8 R/extr_outs.R | 864 +++++++++++++++++++++++++++---------------------------- R/prob_sup.R | 144 +++++---- src/Makevars.win | 1 5 files changed, 523 insertions(+), 500 deletions(-)
Title: Extensible, Parallelizable Implementation of the Random Forest
Algorithm
Description: Scalable implementation of classification and regression forests, as described by Breiman (2001), <DOI:10.1023/A:1010933404324>.
Author: Mark Seligman [aut, cre]
Maintainer: Mark Seligman <mseligman@suiji.org>
Diff between Rborist versions 0.3-7 dated 2024-01-15 and 0.3-11 dated 2025-02-02
DESCRIPTION | 14 +- MD5 | 185 ++++++++++++++++++----------------- NAMESPACE | 1 R/Export.R | 2 R/Streamline.R | 2 R/deframe.R | 20 ++- R/expandfe.R | 2 R/forestWeight.R | 2 R/getQuantiles.R | 6 - R/predict.arbTrain.R | 27 ++--- R/predict.rfArb.R |only R/preformat.R | 5 R/presample.R | 14 +- R/rfArb.R | 100 ++++++++++++------- R/rfTrain.R | 31 +++--- R/validate.R | 43 ++++++-- build/vignette.rds |binary inst/doc/rborist.R | 128 ++++++++++++------------ inst/doc/rborist.html | 78 ++++++++------- man/predict.arbTrain.Rd | 2 man/predict.rfArb.Rd |only man/preformat.Rd | 2 man/presample.Rd | 9 + man/rfArb.Rd | 23 ++-- man/rfTrain.Rd | 10 - man/validate.Rd | 8 - src/accum.h | 14 +- src/cand.cc | 6 - src/coreR.cc |only src/coreR.h |only src/corebridge.cc |only src/corebridge.h |only src/cutaccum.cc | 60 +++++++---- src/cutaccum.h | 159 +++++++++++++++++++++--------- src/cutaccumcart.cc | 87 ++++------------ src/cutaccumcart.h | 38 ++----- src/deframe.cc | 14 +- src/fecore.cc |only src/fecore.h |only src/fepredict.cc | 9 - src/fepredict.h | 3 src/fetrain.cc | 9 - src/fetrain.h | 7 - src/forest.cc | 2 src/forestR.cc | 18 +-- src/forestR.h | 2 src/forestWeightR.cc | 7 - src/frontier.cc | 4 src/interlevel.cc | 4 src/leaf.cc | 2 src/leafR.cc | 22 ++-- src/leafR.h | 2 src/nodescorer.cc | 2 src/ompthread.cc | 2 src/ompthread.h | 22 +++- src/path.h | 1 src/predict.cc | 6 - src/predictR.cc | 2 src/predictRRf.cc | 6 - src/predictbridge.cc | 5 src/predictbridge.h | 3 src/prediction.cc | 6 - src/predictorframe.cc | 2 src/predictorframe.h | 2 src/prng.h | 36 ------ src/prngR.cc | 52 ++++------ src/rcppInit.cc | 2 src/rcppInit.h | 2 src/rlecresc.cc | 6 - src/rlecresc.h | 1 src/rleframe.h | 8 - src/rleframeR.cc | 60 ----------- src/rleframeR.h | 5 src/runaccum.cc | 20 ++- src/runaccum.h | 2 src/runfrontier.cc | 2 src/sample.h | 217 ++++++++++++++++++++++++------------------ src/sampledobs.cc | 2 src/sampler.cc | 103 ++++++++++--------- src/sampler.h | 26 ++++- src/samplerR.cc | 8 - src/samplerR.h | 4 src/samplerbridge.cc | 3 src/samplerbridge.h | 1 src/sfcart.cc | 38 ------- src/signatureR.cc | 190 ++++++++++++++++++------------------ src/signatureR.h | 50 +++++++-- src/splitfrontier.cc | 55 +++++++--- src/splitfrontier.h | 77 +++++++++----- src/trainR.cc | 54 +++++----- src/trainR.h | 17 ++- src/trainRRf.cc | 13 +- src/trainRRf.h | 2 src/trainbridge.cc | 11 -- src/trainbridge.h | 15 -- src/typeparam.h | 1 tests/testthat/test-presort.R |only tests/testthat/test-regNum.R | 8 - 98 files changed, 1227 insertions(+), 1106 deletions(-)
Title: Photobiological Calculations
Description: Definitions of classes, methods, operators and functions for use
in photobiology and radiation meteorology and climatology. Calculation of
effective (weighted) and not-weighted irradiances/doses, fluence rates,
transmittance, reflectance, absorptance, absorbance and diverse ratios and
other derived quantities from spectral data. Local maxima and minima: peaks,
valleys and spikes. Conversion between energy-and photon-based units.
Wavelength interpolation. Astronomical calculations related solar angles and
day length. Colours and vision. This package is part of the 'r4photobiology'
suite, Aphalo, P. J. (2015) <doi:10.19232/uv4pb.2015.1.14>.
Author: Pedro J. Aphalo [aut, cre] ,
Titta K. Kotilainen [ctb] ,
Glenn Davis [ctb],
Agnese Fazio [ctb]
Maintainer: Pedro J. Aphalo <pedro.aphalo@helsinki.fi>
Diff between photobiology versions 0.11.4 dated 2024-11-30 and 0.12.0 dated 2025-02-02
photobiology-0.11.4/photobiology/R/relative-am.r |only photobiology-0.11.4/photobiology/R/spct.operators.r |only photobiology-0.11.4/photobiology/R/sun.calc.r |only photobiology-0.11.4/photobiology/R/water.et.r |only photobiology-0.11.4/photobiology/R/water.vapour.R |only photobiology-0.11.4/photobiology/data/ccd.spct.rda |only photobiology-0.11.4/photobiology/data/photodiode.spct.rda |only photobiology-0.11.4/photobiology/inst/doc/userguide-2-astronomy.R |only photobiology-0.11.4/photobiology/inst/doc/userguide-2-astronomy.Rmd |only photobiology-0.11.4/photobiology/inst/doc/userguide-2-astronomy.html |only photobiology-0.11.4/photobiology/man/ET_ref.Rd |only photobiology-0.11.4/photobiology/man/as.solar_date.Rd |only photobiology-0.11.4/photobiology/man/as_tod.Rd |only photobiology-0.11.4/photobiology/man/day_night.Rd |only photobiology-0.11.4/photobiology/man/format.solar_time.Rd |only photobiology-0.11.4/photobiology/man/format.tod_time.Rd |only photobiology-0.11.4/photobiology/man/irrad_extraterrestrial.Rd |only photobiology-0.11.4/photobiology/man/is.solar_time.Rd |only photobiology-0.11.4/photobiology/man/net_irradiance.Rd |only photobiology-0.11.4/photobiology/man/print.solar_time.Rd |only photobiology-0.11.4/photobiology/man/print.tod_time.Rd |only photobiology-0.11.4/photobiology/man/relative_AM.Rd |only photobiology-0.11.4/photobiology/man/solar_time.Rd |only photobiology-0.11.4/photobiology/man/sun_angles.Rd |only photobiology-0.11.4/photobiology/man/twilight2angle.Rd |only photobiology-0.11.4/photobiology/man/tz_time_diff.Rd |only photobiology-0.11.4/photobiology/man/validate_geocode.Rd |only photobiology-0.11.4/photobiology/man/water_vp_sat.Rd |only photobiology-0.11.4/photobiology/vignettes/userguide-2-astronomy.Rmd |only photobiology-0.12.0/photobiology/DESCRIPTION | 10 photobiology-0.12.0/photobiology/MD5 | 160 - 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photobiology-0.12.0/photobiology/man/sun_evening.spct.Rd | 115 photobiology-0.12.0/photobiology/man/times-.generic_spct.Rd | 2 photobiology-0.12.0/photobiology/man/two_filters.spct.Rd | 143 - photobiology-0.12.0/photobiology/man/two_sensors.mspct.Rd |only photobiology-0.12.0/photobiology/man/using_Tfr.Rd | 2 photobiology-0.12.0/photobiology/man/verbose_as_default.Rd | 2 photobiology-0.12.0/photobiology/man/water.spct.Rd | 1 photobiology-0.12.0/photobiology/man/wb_trim_as_default.Rd | 2 photobiology-0.12.0/photobiology/man/white_led.source_spct.Rd | 1 99 files changed, 2115 insertions(+), 1886 deletions(-)
Title: Embedded JavaScript and WebAssembly Engine for R
Description: An R interface to V8 <https://v8.dev>: Google's open source JavaScript
and WebAssembly engine. This package can be compiled either with V8 version 6
and up or NodeJS when built as a shared library.
Author: Jeroen Ooms [aut, cre] ,
Jan Marvin Garbuszus [ctb]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>
Diff between V8 versions 6.0.0 dated 2024-10-12 and 6.0.1 dated 2025-02-02
DESCRIPTION | 6 +++--- MD5 | 18 +++++++++--------- NEWS | 3 +++ build/partial.rdb |binary build/vignette.rds |binary inst/doc/npm.R | 4 ++-- inst/doc/npm.html | 4 ++-- inst/doc/v8_intro.R | 24 +++++++++++++----------- inst/doc/v8_intro.html | 6 +++--- src/bindings.cpp | 4 ++-- 10 files changed, 37 insertions(+), 32 deletions(-)
Title: Interactively Visualize Structural Equation Modeling Diagrams
Description: It is an R package and web-based application, allowing users to perform interactive and reproducible visualizations of path diagrams for structural equation modeling (SEM) and networks using the 'ggplot2' engine. Its app (built with 'shiny') provides an interface that allows extensive customization, and creates CSV outputs, which can then be used to recreate the figures either using the web app or script-based workflow.
Author: Seung Hyun Min [aut, cre]
Maintainer: Seung Hyun Min <seung.min@mail.mcgill.ca>
Diff between ggsem versions 0.2.3 dated 2025-01-27 and 0.2.4 dated 2025-02-02
DESCRIPTION | 6 MD5 | 8 README.md | 2 inst/shiny/app.R | 179 +++++++++++++-------- inst/shiny/rsconnect/shinyapps.io/smin95/ggsem.dcf | 2 5 files changed, 125 insertions(+), 72 deletions(-)
Title: Client for Central Bank APIs
Description: A client for retrieving data and metadata from major central
bank APIs. It supports access to the 'Bundesbank SDMX Web Service API'
(<https://www.bundesbank.de/en/statistics/time-series-databases/help-for-sdmx-web-service/web-service-interface-data>),
the 'Swiss National Bank Data Portal' (<https://data.snb.ch/en>), and the
'European Central Bank Data Portal API'
(<https://data.ecb.europa.eu/help/api/overview>).
Author: Maximilian Muecke [aut, cre]
Maintainer: Maximilian Muecke <muecke.maximilian@gmail.com>
Diff between bbk versions 0.5.0 dated 2024-12-02 and 0.6.0 dated 2025-02-02
DESCRIPTION | 25 +++++---- MD5 | 42 ++++++++-------- NAMESPACE | 5 + NEWS.md | 22 +++++--- R/assertions.R | 18 ++++++ R/bbk-package.R | 11 +--- R/bbk.R | 91 ++++++++++++++++++----------------- R/ecb-euro-rates.R | 35 +++++++------ R/ecb.R | 60 ++++++++++------------- R/snb.R |only R/utils.R | 12 ---- README.md | 67 ++++++++++++++++--------- man/bbk-package.Rd | 4 - man/bbk_data.Rd | 21 ++++---- man/bbk_metadata.Rd | 10 ++- man/bbk_series.Rd | 9 ++- man/ecb_data.Rd | 17 +++--- man/ecb_euro_rates.Rd | 6 +- man/ecb_metadata.Rd | 10 ++- man/figures/README-plotting-1.png |binary man/snb_data.Rd |only tests/testthat/fixtures/snb-data.rds |only tests/testthat/test-ecb-euro-rates.R | 4 - tests/testthat/test-snb.R |only 24 files changed, 260 insertions(+), 209 deletions(-)
Title: Classification Evaluation Metrics
Description: A fast, robust and easy-to-use calculation
of multi-class classification evaluation metrics based on confusion matrix.
Author: G. Dudnik [aut, cre, cph]
Maintainer: G. Dudnik <gl.dudnik@gmail.com>
Diff between mltest versions 1.0.1 dated 2018-11-16 and 1.0.2 dated 2025-02-02
DESCRIPTION | 23 ++++++++++++++-------- MD5 | 10 +++++---- NEWS.md | 10 +++++++++ R/ml_test.R | 58 ++++++++++++++++++++++++++++----------------------------- build |only inst |only man/ml_test.Rd | 56 +++++++++++++++++++++++++++---------------------------- 7 files changed, 88 insertions(+), 69 deletions(-)
Title: Teaching Data for Statistics and Data Science
Description: Provides data sets for teaching statistics and data science courses.
It includes a sample of data from John Edmund Kerrich's famous
coinflip experiment. These are data that I used for statistics. The package
also contains an R Markdown template with the required formatting for
assignments in my former courses.
Author: Christopher Prener [aut, cre] ,
Bill Bradley [dtc],
NORC at the University of Chicago [dtc],
UN Inter-agency Group for Child Mortality Estimation [dtc],
U.S. Department of Energy [dtc]
Maintainer: Christopher Prener <chris.prener@gmail.com>
Diff between testDriveR versions 0.5.2 dated 2022-05-29 and 0.5.3 dated 2025-02-02
testDriveR-0.5.2/testDriveR/R/testDriveR-package.R |only testDriveR-0.5.2/testDriveR/man/testDriveR.Rd |only testDriveR-0.5.3/testDriveR/DESCRIPTION | 38 ++++++++++++------- testDriveR-0.5.3/testDriveR/MD5 | 8 +--- testDriveR-0.5.3/testDriveR/NEWS.md | 5 ++ testDriveR-0.5.3/testDriveR/README.md | 42 ++++++++++----------- 6 files changed, 54 insertions(+), 39 deletions(-)
Title: Read Spectral and Logged Data from Foreign Files
Description: Functions for reading, and in some cases writing, foreign files
containing spectral data from spectrometers and their associated software,
output from daylight simulation models in common use, and some spectral
data repositories. As well as functions for exchange of spectral data with
other R packages. Part of the 'r4photobiology' suite,
Aphalo P. J. (2015) <doi:10.19232/uv4pb.2015.1.14>.
Author: Pedro J. Aphalo [aut, cre] ,
Titta K. Kotilainen [ctb] ,
Glenn Davis [ctb]
Maintainer: Pedro J. Aphalo <pedro.aphalo@helsinki.fi>
Diff between photobiologyInOut versions 0.4.29 dated 2024-11-22 and 0.4.30 dated 2025-02-02
DESCRIPTION | 20 - MD5 | 16 - NEWS.md | 28 +- R/read-cid-spectravue-csv.r | 4 R/read-cie-csv.r | 58 +++- R/read-psi-spectrapen-csv.r | 2 README.md | 3 inst/doc/user-guide.html | 549 ++++++++++++++++++++++---------------------- man/read_CIE_csv.Rd | 14 - 9 files changed, 369 insertions(+), 325 deletions(-)
More information about photobiologyInOut at CRAN
Permanent link
Title: Miscellaneous Functions 'T. Yanagida'
Description: Miscellaneous functions for (1) data management (e.g., grand-mean and group-mean centering, coding variables and reverse coding items, scale and cluster scores, reading and writing Excel and SPSS files), (2) descriptive statistics (e.g., frequency table, cross tabulation, effect size measures), (3) missing data (e.g., descriptive statistics for missing data, missing data pattern, Little's test of Missing Completely at Random, and auxiliary variable analysis), (4) multilevel data (e.g., multilevel descriptive statistics, within-group and between-group correlation matrix, multilevel confirmatory factor analysis, level-specific fit indices, cross-level measurement equivalence evaluation, multilevel composite reliability, and multilevel R-squared measures), (5) item analysis (e.g., confirmatory factor analysis, coefficient alpha and omega, between-group and longitudinal measurement equivalence evaluation), (6) statistical analysis (e.g., bootstrap confidence intervals, collinearity and res [...truncated...]
Author: Takuya Yanagida [aut, cre]
Maintainer: Takuya Yanagida <takuya.yanagida@univie.ac.at>
Diff between misty versions 0.6.8 dated 2024-10-24 and 0.7.0 dated 2025-02-02
misty-0.6.8/misty/R/size.cor.R |only misty-0.6.8/misty/R/size.prop.R |only misty-0.6.8/misty/man/size.cor.Rd |only misty-0.6.8/misty/man/size.prop.Rd |only misty-0.7.0/misty/DESCRIPTION | 16 misty-0.7.0/misty/MD5 | 400 +- misty-0.7.0/misty/NAMESPACE | 13 misty-0.7.0/misty/NEWS.md | 58 misty-0.7.0/misty/R/aov.b.R | 239 - misty-0.7.0/misty/R/aov.w.R | 337 -- misty-0.7.0/misty/R/as.na.R | 40 misty-0.7.0/misty/R/blimp.R | 115 misty-0.7.0/misty/R/blimp.bayes.R | 106 misty-0.7.0/misty/R/blimp.plot.R | 109 misty-0.7.0/misty/R/blimp.print.R | 88 misty-0.7.0/misty/R/blimp.run.R | 34 misty-0.7.0/misty/R/blimp.update.R | 59 misty-0.7.0/misty/R/center.R | 40 misty-0.7.0/misty/R/check.collin.R | 159 - misty-0.7.0/misty/R/check.outlier.R | 116 misty-0.7.0/misty/R/check.resid.R | 366 +- misty-0.7.0/misty/R/chr.color.R | 24 misty-0.7.0/misty/R/chr.grep.R | 60 misty-0.7.0/misty/R/chr.gsub.R | 158 - misty-0.7.0/misty/R/chr.omit.R | 17 misty-0.7.0/misty/R/chr.trim.R | 30 misty-0.7.0/misty/R/chr.trunc.R |only misty-0.7.0/misty/R/ci.cor.R |only misty-0.7.0/misty/R/ci.mean.R | 1494 ++++++---- misty-0.7.0/misty/R/ci.mean.diff.R | 415 -- misty-0.7.0/misty/R/ci.mean.w.R | 62 misty-0.7.0/misty/R/ci.prop.R | 951 ++++-- misty-0.7.0/misty/R/ci.prop.diff.R | 409 -- misty-0.7.0/misty/R/ci.var.R | 1422 ++++++---- misty-0.7.0/misty/R/cluster.scores.R | 52 misty-0.7.0/misty/R/coding.R | 23 misty-0.7.0/misty/R/cohens.d.R | 700 ---- misty-0.7.0/misty/R/cor.matrix.R | 141 misty-0.7.0/misty/R/crosstab.R | 107 misty-0.7.0/misty/R/descript.R | 321 -- misty-0.7.0/misty/R/df.check.R |only misty-0.7.0/misty/R/df.duplicated.R | 44 misty-0.7.0/misty/R/df.head.R |only misty-0.7.0/misty/R/df.merge.R | 34 misty-0.7.0/misty/R/df.move.R | 14 misty-0.7.0/misty/R/df.rbind.R | 2 misty-0.7.0/misty/R/df.rename.R | 21 misty-0.7.0/misty/R/df.sort.R | 53 misty-0.7.0/misty/R/df.subset.R | 16 misty-0.7.0/misty/R/dominance.R | 281 - misty-0.7.0/misty/R/dominance.manual.R | 179 - misty-0.7.0/misty/R/effsize.R | 98 misty-0.7.0/misty/R/freq.R | 150 - misty-0.7.0/misty/R/globals.R | 2 misty-0.7.0/misty/R/indirect.R | 42 misty-0.7.0/misty/R/item.alpha.R | 151 - misty-0.7.0/misty/R/item.cfa.R | 128 misty-0.7.0/misty/R/item.invar.R | 147 - misty-0.7.0/misty/R/item.omega.R | 124 misty-0.7.0/misty/R/item.reverse.R | 32 misty-0.7.0/misty/R/item.scores.R | 43 misty-0.7.0/misty/R/lagged.R | 41 misty-0.7.0/misty/R/libraries.R | 36 misty-0.7.0/misty/R/mplus.R | 53 misty-0.7.0/misty/R/mplus.bayes.R | 108 misty-0.7.0/misty/R/mplus.lca.R | 56 misty-0.7.0/misty/R/mplus.plot.R | 119 misty-0.7.0/misty/R/mplus.print.R | 35 misty-0.7.0/misty/R/mplus.run.R | 19 misty-0.7.0/misty/R/mplus.update.R | 47 misty-0.7.0/misty/R/multilevel.cfa.R | 155 - misty-0.7.0/misty/R/multilevel.cor.R | 248 - misty-0.7.0/misty/R/multilevel.descript.R | 86 misty-0.7.0/misty/R/multilevel.fit.R | 60 misty-0.7.0/misty/R/multilevel.icc.R | 62 misty-0.7.0/misty/R/multilevel.indirect.R | 38 misty-0.7.0/misty/R/multilevel.invar.R | 120 misty-0.7.0/misty/R/multilevel.omega.R | 182 - misty-0.7.0/misty/R/multilevel.r2.R | 39 misty-0.7.0/misty/R/multilevel.r2.manual.R | 69 misty-0.7.0/misty/R/na.auxiliary.R | 119 misty-0.7.0/misty/R/na.coverage.R | 86 misty-0.7.0/misty/R/na.descript.R | 84 misty-0.7.0/misty/R/na.indicator.R | 82 misty-0.7.0/misty/R/na.pattern.R | 128 misty-0.7.0/misty/R/na.prop.R | 35 misty-0.7.0/misty/R/na.satcor.R | 17 misty-0.7.0/misty/R/na.test.R | 80 misty-0.7.0/misty/R/print.misty.object.R | 2169 +++++++++++++-- misty-0.7.0/misty/R/read.data.R | 64 misty-0.7.0/misty/R/read.dta.R | 35 misty-0.7.0/misty/R/read.mplus.R | 13 misty-0.7.0/misty/R/read.sav.R | 38 misty-0.7.0/misty/R/read.xlsx.R | 22 misty-0.7.0/misty/R/rec.R | 47 misty-0.7.0/misty/R/restart.R | 6 misty-0.7.0/misty/R/result.lca.R | 81 misty-0.7.0/misty/R/robust.coef.R | 78 misty-0.7.0/misty/R/rwg.lindell.R | 120 misty-0.7.0/misty/R/script.copy.R | 30 misty-0.7.0/misty/R/script.new.R | 26 misty-0.7.0/misty/R/script.open.R | 62 misty-0.7.0/misty/R/setsource.R | 16 misty-0.7.0/misty/R/size.mean.R | 430 ++- misty-0.7.0/misty/R/skewness.R | 423 ++ misty-0.7.0/misty/R/std.coef.R | 104 misty-0.7.0/misty/R/test.levene.R | 148 - misty-0.7.0/misty/R/test.t.R | 550 +-- misty-0.7.0/misty/R/test.welch.R | 332 -- misty-0.7.0/misty/R/test.z.R | 468 +-- misty-0.7.0/misty/R/utils.R | 3693 ++++++++++++++++++++++++-- misty-0.7.0/misty/R/write.dta.R | 17 misty-0.7.0/misty/R/write.mplus.R | 17 misty-0.7.0/misty/R/write.result.R | 897 +++++- misty-0.7.0/misty/R/write.sav.R | 23 misty-0.7.0/misty/R/write.xlsx.R | 30 misty-0.7.0/misty/man/aov.b.Rd | 20 misty-0.7.0/misty/man/aov.w.Rd | 26 misty-0.7.0/misty/man/blimp.Rd | 7 misty-0.7.0/misty/man/blimp.bayes.Rd | 1 misty-0.7.0/misty/man/blimp.plot.Rd | 12 misty-0.7.0/misty/man/blimp.print.Rd | 5 misty-0.7.0/misty/man/blimp.run.Rd | 2 misty-0.7.0/misty/man/blimp.update.Rd | 2 misty-0.7.0/misty/man/check.collin.Rd | 32 misty-0.7.0/misty/man/check.outlier.Rd | 20 misty-0.7.0/misty/man/check.resid.Rd | 54 misty-0.7.0/misty/man/chr.color.Rd | 9 misty-0.7.0/misty/man/chr.grep.Rd | 3 misty-0.7.0/misty/man/chr.gsub.Rd | 7 misty-0.7.0/misty/man/chr.omit.Rd | 3 misty-0.7.0/misty/man/chr.trim.Rd | 3 misty-0.7.0/misty/man/chr.trunc.Rd |only misty-0.7.0/misty/man/ci.cor.Rd |only misty-0.7.0/misty/man/ci.mean.Rd | 673 +++- misty-0.7.0/misty/man/ci.mean.diff.Rd | 157 - 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Title: Summary Tables and Plots for Statistical Models and Data:
Beautiful, Customizable, and Publication-Ready
Description: Create beautiful and customizable tables to summarize several
statistical models side-by-side. Draw coefficient plots, multi-level
cross-tabs, dataset summaries, balance tables (a.k.a. "Table 1s"), and
correlation matrices. This package supports dozens of statistical models, and
it can produce tables in HTML, LaTeX, Word, Markdown, PDF, PowerPoint, Excel,
RTF, JPG, or PNG. Tables can easily be embedded in 'Rmarkdown' or 'knitr'
dynamic documents. Details can be found in Arel-Bundock (2022)
<doi:10.18637/jss.v103.i01>.
Author: Vincent Arel-Bundock [aut, cre]
,
Joachim Gassen [ctb] ,
Nathan Eastwood [ctb],
Nick Huntington-Klein [ctb] ,
Moritz Schwarz [ctb] ,
Benjamin Elbers [ctb] ,
Grant McDermott [ctb] ,
Lukas Wallrich [ctb]
Maintainer: Vincent Arel-Bundock <vincent.arel-bundock@umontreal.ca>
Diff between modelsummary versions 2.2.0 dated 2024-09-02 and 2.3.0 dated 2025-02-02
modelsummary-2.2.0/modelsummary/R/modelsummary_wide.R |only modelsummary-2.2.0/modelsummary/man/modelsummary_wide.Rd |only modelsummary-2.3.0/modelsummary/DESCRIPTION | 48 modelsummary-2.3.0/modelsummary/MD5 | 170 - modelsummary-2.3.0/modelsummary/NAMESPACE | 1 modelsummary-2.3.0/modelsummary/NEWS.md | 865 +++++----- modelsummary-2.3.0/modelsummary/R/bind_est_gof.R | 6 modelsummary-2.3.0/modelsummary/R/datasummary.R | 57 modelsummary-2.3.0/modelsummary/R/datasummary_balance.R | 559 +++--- modelsummary-2.3.0/modelsummary/R/datasummary_correlation.R | 101 - modelsummary-2.3.0/modelsummary/R/datasummary_crosstab.R | 258 +- modelsummary-2.3.0/modelsummary/R/datasummary_df.R | 47 modelsummary-2.3.0/modelsummary/R/datasummary_skim.R | 161 - modelsummary-2.3.0/modelsummary/R/factory_gt.R | 36 modelsummary-2.3.0/modelsummary/R/factory_kableExtra.R | 3 modelsummary-2.3.0/modelsummary/R/factory_tinytable.R | 21 modelsummary-2.3.0/modelsummary/R/fmt_factory.R | 24 modelsummary-2.3.0/modelsummary/R/get_estimates.R | 20 modelsummary-2.3.0/modelsummary/R/modelplot.R | 22 modelsummary-2.3.0/modelsummary/R/modelsummary.R | 474 ++--- modelsummary-2.3.0/modelsummary/R/modelsummary_rbind.R | 23 modelsummary-2.3.0/modelsummary/R/shape_estimates.R | 91 - modelsummary-2.3.0/modelsummary/R/stars.R | 4 modelsummary-2.3.0/modelsummary/R/utils_labels.R | 7 modelsummary-2.3.0/modelsummary/R/zzz.R | 18 modelsummary-2.3.0/modelsummary/inst/tinytest/_tinysnapshot/align-md_dcolumn.txt | 86 modelsummary-2.3.0/modelsummary/inst/tinytest/_tinysnapshot/datasummary_balance-escape_FALSE.txt | 112 + modelsummary-2.3.0/modelsummary/inst/tinytest/_tinysnapshot/datasummary_balance-escape_TRUE.txt | 112 + modelsummary-2.3.0/modelsummary/inst/tinytest/_tinysnapshot/datasummary_balance-issue711.txt | 121 + modelsummary-2.3.0/modelsummary/inst/tinytest/_tinysnapshot/escape-caption_notes.txt | 28 modelsummary-2.3.0/modelsummary/inst/tinytest/_tinysnapshot/escape-correlation_latex.txt | 36 modelsummary-2.3.0/modelsummary/inst/tinytest/_tinysnapshot/escape-correlation_latex_FALSE.txt | 36 modelsummary-2.3.0/modelsummary/inst/tinytest/_tinysnapshot/escape-crosstab_latex.txt | 36 modelsummary-2.3.0/modelsummary/inst/tinytest/_tinysnapshot/escape-crosstab_latex_FALSE.txt | 36 modelsummary-2.3.0/modelsummary/inst/tinytest/_tinysnapshot/escape-datasummary_escape_colnames.txt | 9 modelsummary-2.3.0/modelsummary/inst/tinytest/_tinysnapshot/escape-datasummary_escape_colnames_FALSE.txt | 9 modelsummary-2.3.0/modelsummary/inst/tinytest/_tinysnapshot/escape-escape.html | 179 -- modelsummary-2.3.0/modelsummary/inst/tinytest/_tinysnapshot/escape-escape_html_false.html | 179 -- modelsummary-2.3.0/modelsummary/inst/tinytest/_tinysnapshot/escape-hat_I_formula.txt | 30 modelsummary-2.3.0/modelsummary/inst/tinytest/_tinysnapshot/escape-hat_fixest.txt | 34 modelsummary-2.3.0/modelsummary/inst/tinytest/_tinysnapshot/escape-issue707_01.txt | 8 modelsummary-2.3.0/modelsummary/inst/tinytest/_tinysnapshot/escape-issue707_02.txt | 9 modelsummary-2.3.0/modelsummary/inst/tinytest/_tinysnapshot/escape-issue707_03.txt | 8 modelsummary-2.3.0/modelsummary/inst/tinytest/_tinysnapshot/escape-issue707_04.txt | 9 modelsummary-2.3.0/modelsummary/inst/tinytest/_tinysnapshot/escape-latex.txt | 35 modelsummary-2.3.0/modelsummary/inst/tinytest/_tinysnapshot/escape-latex_tabular_escape_false.txt | 4 modelsummary-2.3.0/modelsummary/inst/tinytest/_tinysnapshot/escape-latex_tabular_escape_true.txt | 4 modelsummary-2.3.0/modelsummary/inst/tinytest/_tinysnapshot/escape-modelsummary.html | 167 - 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modelsummary-2.3.0/modelsummary/inst/tinytest/test-shape.R | 205 +- modelsummary-2.3.0/modelsummary/man/datasummary.Rd | 44 modelsummary-2.3.0/modelsummary/man/datasummary_balance.Rd | 48 modelsummary-2.3.0/modelsummary/man/datasummary_correlation.Rd | 46 modelsummary-2.3.0/modelsummary/man/datasummary_crosstab.Rd | 46 modelsummary-2.3.0/modelsummary/man/datasummary_df.Rd | 29 modelsummary-2.3.0/modelsummary/man/datasummary_skim.Rd | 49 modelsummary-2.3.0/modelsummary/man/dsummary.Rd | 44 modelsummary-2.3.0/modelsummary/man/modelplot.Rd | 20 modelsummary-2.3.0/modelsummary/man/modelsummary.Rd | 157 + modelsummary-2.3.0/modelsummary/man/msummary.Rd | 157 + 88 files changed, 3541 insertions(+), 2973 deletions(-)
Title: Arellano-Bond LASSO Estimator for Dynamic Linear Panel Models
Description: Implements the Arellano-Bond estimation method combined with LASSO for dynamic linear panel models. See Chernozhukov et al. (2024) "Arellano-Bond LASSO Estimator for Dynamic Linear Panel Models". arXiv preprint <doi:10.48550/arXiv.2402.00584>.
Author: Victor Chernozhukov [aut],
Ivan Fernandez-Val [aut],
Chen Huang [aut],
Weining Wang [aut],
Junyu Chen [cre]
Maintainer: Junyu Chen <junyu.chen@outlook.de>
Diff between ablasso versions 1.0 dated 2024-05-03 and 1.1 dated 2025-02-02
DESCRIPTION | 6 +++--- MD5 | 4 ++-- R/multivariate.R | 4 ++-- 3 files changed, 7 insertions(+), 7 deletions(-)
Title: Two Highly Customizable 'rmarkdown' Themes for Scientific
Reports
Description: Offers 'markdown' output formats designed with various styles, allowing users to generate HTML reports tailored for scientific or machine learning showcase. The output has a contemporary appearance with vibrant visuals, providing numerous styles for effective highlighting. Created using the 'tufte' <https://rstudio.github.io/tufte/> package code as a starting point.
Author: Obinna Obianom [aut, cre]
Maintainer: Obinna Obianom <idonshayo@gmail.com>
Diff between scientific versions 2024.2 dated 2024-05-08 and 2025.0 dated 2025-02-02
scientific-2024.2/scientific/R/handout.R |only scientific-2024.2/scientific/R/html.R |only scientific-2024.2/scientific/R/utils.R |only scientific-2024.2/scientific/inst/rmarkdown/templates/handout |only scientific-2024.2/scientific/inst/rmarkdown/templates/html/layout/index.ohtml |only scientific-2025.0/scientific/DESCRIPTION | 13 scientific-2025.0/scientific/MD5 | 34 scientific-2025.0/scientific/NAMESPACE | 2 scientific-2025.0/scientific/NEWS.md | 10 scientific-2025.0/scientific/R/base_func.R |only scientific-2025.0/scientific/R/markdown.R |only scientific-2025.0/scientific/README.md | 52 scientific-2025.0/scientific/inst/doc/Introduction.Rmd | 3 scientific-2025.0/scientific/inst/doc/Introduction.html | 9 scientific-2025.0/scientific/inst/rmarkdown/templates/html/layout/scientific1.css |40652 ---------- scientific-2025.0/scientific/inst/rmarkdown/templates/html/layout/template1.tpl |only scientific-2025.0/scientific/inst/rmarkdown/templates/html/layout/template2.tpl |only scientific-2025.0/scientific/inst/rmarkdown/templates/html/skeleton/skeleton.Rmd | 2 scientific-2025.0/scientific/inst/rmarkdown/templates/html/skeleton/skeleton2.Rmd |only scientific-2025.0/scientific/inst/rmarkdown/templates/html/template.yaml | 8 scientific-2025.0/scientific/man/handout.Rd | 206 scientific-2025.0/scientific/man/scientific-package.Rd | 4 scientific-2025.0/scientific/vignettes/Introduction.Rmd | 3 23 files changed, 168 insertions(+), 40830 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-01-31 0.1.2
2022-02-15 0.1.1
2021-05-17 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-08-30 1.4.0
2023-08-23 1.3.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-04-09 1.0.0
Title: Statistical Tools for Topological Data Analysis
Description: Tools for Topological Data Analysis. The package focuses on statistical analysis of persistent homology and density clustering. For that, this package provides an R interface for the efficient algorithms of the C++ libraries 'GUDHI' <https://project.inria.fr/gudhi/software/>, 'Dionysus' <https://www.mrzv.org/software/dionysus/>, and 'PHAT' <https://bitbucket.org/phat-code/phat/>. This package also implements methods from Fasy et al. (2014) <doi:10.1214/14-AOS1252> and Chazal et al. (2015) <doi:10.20382/jocg.v6i2a8> for analyzing the statistical significance of persistent homology features.
Author: Brittany T. Fasy [aut],
Jisu Kim [aut, cre],
Fabrizio Lecci [aut],
Clement Maria [aut],
David L. Millman [aut],
Vincent Rouvreau. [aut]
Maintainer: Jisu Kim <jkim82133@snu.ac.kr>
Diff between TDA versions 1.9.1 dated 2024-01-24 and 1.9.4 dated 2025-02-02
DESCRIPTION | 53 - MD5 | 32 NEWS | 4 R/RcppExports.R | 134 +- build/vignette.rds |binary inst/doc/article.R | 1227 ++++++++++++-------------- inst/doc/article.Rnw | 42 inst/doc/article.pdf |binary man/TDA-package.Rd | 17 src/boost/container/detail/copy_move_algo.hpp | 81 - src/boost/container/detail/flat_tree.hpp | 451 +++++---- src/boost/container/flat_map.hpp | 598 +++++++----- src/boost/container/vector.hpp | 698 +++++++++----- src/gudhi/Miniball.COPYRIGHT | 8 src/gudhi/Miniball.README | 52 - vignettes/article.Rnw | 42 vignettes/biblio.bib | 75 - 17 files changed, 1939 insertions(+), 1575 deletions(-)
Title: Translate R Expressions to 'MathML' and 'LaTeX'/'MathJax'
Description: Translate R expressions to 'MathML' or 'MathJax'/'LaTeX' so that
they can be rendered in R markdown documents and shiny apps. This package
depends on R package 'rolog', which requires an installation of the
'SWI'-'Prolog' runtime either from 'swi-prolog.org' or from R
package 'rswipl'.
Author: Matthias Gondan [aut, cre, cph] ,
Irene Alfarone [aut] ,
European Commission [fnd]
Maintainer: Matthias Gondan <Matthias.Gondan-Rochon@uibk.ac.at>
Diff between mathml versions 1.2 dated 2023-07-15 and 1.3 dated 2025-02-02
mathml-1.2/mathml/man/over.Rd |only mathml-1.3/mathml/.aspell |only mathml-1.3/mathml/DESCRIPTION | 17 mathml-1.3/mathml/MD5 | 36 - mathml-1.3/mathml/NAMESPACE | 1 mathml-1.3/mathml/NEWS.md | 5 mathml-1.3/mathml/R/mathml.R | 67 +- mathml-1.3/mathml/README.md | 24 mathml-1.3/mathml/build/vignette.rds |binary mathml-1.3/mathml/inst/doc/mathml.R | 70 ++ mathml-1.3/mathml/inst/doc/mathml.Rmd | 203 +++++-- mathml-1.3/mathml/inst/doc/mathml.html | 615 +++++++++++++----------- mathml-1.3/mathml/inst/pl/bussproofs.pl |only mathml-1.3/mathml/inst/pl/mathml.pl | 292 ++++++++++- mathml-1.3/mathml/inst/pl/pval.pl |only mathml-1.3/mathml/man/decorations.Rd | 15 mathml-1.3/mathml/man/hook.Rd | 13 mathml-1.3/mathml/man/mathml.Rd | 6 mathml-1.3/mathml/tests/test-bussproofs.Rmd |only mathml-1.3/mathml/tests/testthat/test-mathml.R | 23 mathml-1.3/mathml/vignettes/bibliography.bibtex | 10 mathml-1.3/mathml/vignettes/mathml.Rmd | 203 +++++-- 22 files changed, 1159 insertions(+), 441 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-05-03 1.1.11
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-05-09 0.10.1
2024-05-03 0.10.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-01-11 1.2.4
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-11-27 0.75
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-04-24 1.0.6
2024-04-22 1.0.5
2021-11-22 1.0.4
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-12-10 0.0.6
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-03-05 1.0.0
Title: Fit Dynamic Structural Equation Models
Description: Applies dynamic structural equation models to time-series data
with generic and simplified specification for simultaneous and lagged
effects. Methods are described in Thorson et al. (2024)
"Dynamic structural equation models synthesize ecosystem dynamics
constrained by ecological mechanisms."
Author: James Thorson [aut, cre] ,
Maurice Goodman [ctb]
Maintainer: James Thorson <James.Thorson@noaa.gov>
Diff between dsem versions 1.4.0 dated 2025-01-13 and 1.4.1 dated 2025-02-01
DESCRIPTION | 19 ++-- MD5 | 30 +++--- NEWS.md | 5 + R/dsem.R | 8 - R/make_dsem_ram.R | 42 ++++++--- R/make_matrices.R | 2 R/read_model.R | 13 +- R/utility.R | 2 README.md | 4 inst/doc/vignette.Rmd | 2 inst/doc/vignette.html | 4 man/cAIC.Rd | 110 ++++++++++++------------ man/dsemRTMB.Rd | 182 ++++++++++++++++++++--------------------- man/read_model.Rd | 54 ++++++------ tests/testthat/test-platform.R | 41 +++++++++ vignettes/vignette.Rmd | 2 16 files changed, 295 insertions(+), 225 deletions(-)
Title: Thematic Plots for Mazama Spatial Datasets
Description: A suite of convenience functions for generating US state and county
thematic maps using datasets from the MazamaSpatialUtils package.
Author: Jonathan Callahan [aut, cre],
Rachel Carroll [aut],
Eli Grosman [aut]
Maintainer: Jonathan Callahan <jonathan.s.callahan@gmail.com>
Diff between MazamaSpatialPlots versions 0.2.0 dated 2022-11-15 and 0.3.0 dated 2025-02-01
MazamaSpatialPlots-0.2.0/MazamaSpatialPlots/vignettes/articles/Opportunity_Insights.Rmd |only MazamaSpatialPlots-0.3.0/MazamaSpatialPlots/DESCRIPTION | 13 MazamaSpatialPlots-0.3.0/MazamaSpatialPlots/MD5 | 31 - MazamaSpatialPlots-0.3.0/MazamaSpatialPlots/NEWS.md | 6 MazamaSpatialPlots-0.3.0/MazamaSpatialPlots/R/countyMap.R | 141 ++++--- MazamaSpatialPlots-0.3.0/MazamaSpatialPlots/R/stateMap.R | 178 +++++----- MazamaSpatialPlots-0.3.0/MazamaSpatialPlots/README.md | 2 MazamaSpatialPlots-0.3.0/MazamaSpatialPlots/inst/doc/MazamaSpatialPlots.R | 2 MazamaSpatialPlots-0.3.0/MazamaSpatialPlots/inst/doc/MazamaSpatialPlots.Rmd | 2 MazamaSpatialPlots-0.3.0/MazamaSpatialPlots/inst/doc/MazamaSpatialPlots.html | 40 +- MazamaSpatialPlots-0.3.0/MazamaSpatialPlots/man/countyMap.Rd | 73 ++-- MazamaSpatialPlots-0.3.0/MazamaSpatialPlots/man/stateMap.Rd | 62 +-- MazamaSpatialPlots-0.3.0/MazamaSpatialPlots/tests/testthat/test-countyMap.R | 2 MazamaSpatialPlots-0.3.0/MazamaSpatialPlots/tests/testthat/test-stateMap.R | 2 MazamaSpatialPlots-0.3.0/MazamaSpatialPlots/vignettes/MazamaSpatialPlots.Rmd | 2 MazamaSpatialPlots-0.3.0/MazamaSpatialPlots/vignettes/articles/Creating_State_Maps.Rmd | 9 MazamaSpatialPlots-0.3.0/MazamaSpatialPlots/vignettes/articles/Customizing_State_Maps.Rmd | 55 +-- 17 files changed, 334 insertions(+), 286 deletions(-)
More information about MazamaSpatialPlots at CRAN
Permanent link
Title: Clustering of Functional Data Based on Measures of Change
Description: Implements a three-step procedure in the spirit of Leffondre et al. (2004) to identify clusters of individual longitudinal trajectories. The procedure involves (1) computing a number of "measures of change" capturing various features of the trajectories; (2) using a Principal Component Analysis based dimension reduction algorithm to select a subset of measures and (3) using the k-medoids or k-means algorithm to identify clusters of trajectories.
Author: Marie-Pierre Sylvestre [aut],
Laurence Boulanger [aut, cre],
Gillis Delmas Tchouangue Dinkou [ctb],
Dan Vatnik [ctb]
Maintainer: Laurence Boulanger <laurence.boulanger@umontreal.ca>
Diff between traj versions 2.2.0 dated 2024-07-04 and 2.2.1 dated 2025-02-01
DESCRIPTION | 8 - MD5 | 30 ++-- NAMESPACE | 2 NEWS.md | 10 + R/Step1Measures.R | 201 ++++++++++++++++++--------------- R/Step3Clusters.R | 44 ------- R/plot.trajClusters.R | 225 +++++++++++++++++------------------- README.md | 4 inst/doc/traj_vignette.R | 20 +-- inst/doc/traj_vignette.Rmd | 116 +++++++++---------- inst/doc/traj_vignette.html | 268 ++++++++++++++++++++++---------------------- man/Step1Measures.Rd | 17 +- man/Step3Clusters.Rd | 16 -- man/plot.trajClusters.Rd | 15 +- man/traj-package.Rd | 2 vignettes/traj_vignette.Rmd | 116 +++++++++---------- 16 files changed, 538 insertions(+), 556 deletions(-)
Title: Remote Sensing Data Analysis
Description: Toolbox for remote sensing image processing and analysis such as
calculating spectral indexes, principal component transformation, unsupervised
and supervised classification or fractional cover analyses.
Author: Benjamin Leutner [aut] ,
Ned Horning [aut],
Jakob Schwalb-Willmann [aut] ,
Robert J. Hijmans [ctb] ,
Konstantin Mueller [aut, cre]
Maintainer: Konstantin Mueller <konstantinfinn.mueller@gmx.de>
Diff between RStoolbox versions 1.0.1 dated 2025-02-01 and 1.0.2 dated 2025-02-01
RStoolbox-1.0.1/RStoolbox/src/tinyexpr.c |only RStoolbox-1.0.1/RStoolbox/src/tinyexpr.h |only RStoolbox-1.0.2/RStoolbox/DESCRIPTION | 6 RStoolbox-1.0.2/RStoolbox/MD5 | 12 - RStoolbox-1.0.2/RStoolbox/NEWS.md | 6 RStoolbox-1.0.2/RStoolbox/R/spectralIndices.R | 3 RStoolbox-1.0.2/RStoolbox/man/spectralIndices.Rd | 27 +++ RStoolbox-1.0.2/RStoolbox/src/spectralIndices.cpp | 160 ++++++++++++++++------ 8 files changed, 166 insertions(+), 48 deletions(-)
Title: Convenience Functions for Psychology
Description: Make your workflow faster and easier. Easily customizable
plots (via 'ggplot2'), nice APA tables (following the style of the
*American Psychological Association*) exportable to Word (via
'flextable'), easily run statistical tests or check assumptions, and
automatize various other tasks.
Author: Remi Theriault [aut, cre]
Maintainer: Remi Theriault <remi.theriault@mail.mcgill.ca>
Diff between rempsyc versions 0.1.8 dated 2024-07-01 and 0.1.9 dated 2025-02-01
rempsyc-0.1.8/rempsyc/inst/doc/circles.R |only rempsyc-0.1.8/rempsyc/inst/doc/circles.Rmd |only rempsyc-0.1.8/rempsyc/inst/doc/circles.html |only rempsyc-0.1.8/rempsyc/inst/doc/randomize.R |only rempsyc-0.1.8/rempsyc/inst/doc/randomize.Rmd |only rempsyc-0.1.8/rempsyc/inst/doc/randomize.html |only rempsyc-0.1.8/rempsyc/vignettes/circles.Rmd |only rempsyc-0.1.8/rempsyc/vignettes/randomize.Rmd |only rempsyc-0.1.9/rempsyc/DESCRIPTION | 12 rempsyc-0.1.9/rempsyc/MD5 | 56 -- rempsyc-0.1.9/rempsyc/NEWS.md | 14 rempsyc-0.1.9/rempsyc/R/best_duplicate.R | 2 rempsyc-0.1.9/rempsyc/R/cormatrix_excel.R | 399 ---------------- rempsyc-0.1.9/rempsyc/R/nice_density.R | 4 rempsyc-0.1.9/rempsyc/R/nice_lm.R | 8 rempsyc-0.1.9/rempsyc/R/nice_t_test.R | 17 rempsyc-0.1.9/rempsyc/R/plot_means_over_time.R | 107 ++-- rempsyc-0.1.9/rempsyc/build/vignette.rds |binary rempsyc-0.1.9/rempsyc/inst/WORDLIST | 18 rempsyc-0.1.9/rempsyc/inst/doc/assumptions.Rmd | 2 rempsyc-0.1.9/rempsyc/inst/doc/assumptions.html | 38 - rempsyc-0.1.9/rempsyc/inst/doc/contrasts.html | 18 rempsyc-0.1.9/rempsyc/inst/doc/moderation.Rmd | 2 rempsyc-0.1.9/rempsyc/inst/doc/moderation.html | 30 - rempsyc-0.1.9/rempsyc/inst/doc/scatter.html | 50 +- rempsyc-0.1.9/rempsyc/inst/doc/t-test.html | 28 - rempsyc-0.1.9/rempsyc/inst/doc/table.html | 93 ++- rempsyc-0.1.9/rempsyc/inst/doc/violin.html | 34 - rempsyc-0.1.9/rempsyc/man/cormatrix_excel.Rd | 7 rempsyc-0.1.9/rempsyc/man/plot_means_over_time.Rd | 7 rempsyc-0.1.9/rempsyc/tests/testthat/test-nice_t_test.R | 2 rempsyc-0.1.9/rempsyc/vignettes/assumptions.Rmd | 2 rempsyc-0.1.9/rempsyc/vignettes/moderation.Rmd | 2 33 files changed, 315 insertions(+), 637 deletions(-)
More information about RegrCoeffsExplorer at CRAN
Permanent link
Title: Cross-Platform 'zip' Compression
Description: Cross-Platform 'zip' Compression Library. A replacement for
the 'zip' function, that does not require any additional external
tools on any platform.
Author: Gabor Csardi [aut, cre],
Kuba Podgorski [ctb],
Rich Geldreich [ctb],
Posit Software, PBC [cph, fnd]
Maintainer: Gabor Csardi <csardi.gabor@gmail.com>
Diff between zip versions 2.3.1 dated 2024-01-27 and 2.3.2 dated 2025-02-01
DESCRIPTION | 8 +-- MD5 | 19 ++++---- NEWS.md | 5 ++ R/compat-vctrs.R |only R/utils.R | 15 ++---- R/zip.R | 6 +- README.md | 105 ++++++++---------------------------------------- man/zip-package.Rd | 2 src/rzip.c | 4 - src/zip.c | 2 tests/testthat/helper.R | 3 - 11 files changed, 51 insertions(+), 118 deletions(-)
Title: Sorted L1 Penalized Estimation
Description: Efficient implementations for Sorted L-One Penalized Estimation
(SLOPE): generalized linear models regularized with the sorted L1-norm
(Bogdan et al. 2015). Supported models include
ordinary least-squares regression, binomial regression, multinomial
regression, and Poisson regression. Both dense and sparse predictor
matrices are supported. In addition, the package features predictor
screening rules that enable fast and efficient solutions to high-dimensional
problems.
Author: Johan Larsson [aut, cre] ,
Jonas Wallin [aut] ,
Malgorzata Bogdan [aut],
Ewout van den Berg [aut],
Chiara Sabatti [aut],
Emmanuel Candes [aut],
Evan Patterson [aut],
Weijie Su [aut],
Jakub Kala [aut],
Krystyna Grzesiak [aut],
Michal Burdukiewicz [aut [...truncated...]
Maintainer: Johan Larsson <johanlarsson@outlook.com>
Diff between SLOPE versions 0.5.1 dated 2024-07-09 and 0.5.2 dated 2025-02-01
DESCRIPTION | 6 +-- MD5 | 38 ++++++++++----------- NEWS.md | 7 ++++ R/trainSLOPE.R | 27 ++++++++------- build/vignette.rds |binary inst/doc/introduction.html | 17 +++++---- inst/doc/prox-algs.html | 10 ++--- src/Results.cpp | 3 + src/SolverResults.cpp | 3 + src/families/binomial.h | 3 + src/families/family.h | 23 ++++++------- src/families/gaussian.h | 5 +- src/families/multinomial.h | 11 +++--- src/families/poisson.h | 3 + src/lambdaSequence.cpp | 2 - src/prox.h | 2 - src/rcppSLOPE.cpp | 78 ++++++++++++++++++++++----------------------- src/regularizationPath.h | 2 - src/rescale.h | 1 src/utils.h | 2 - 20 files changed, 129 insertions(+), 114 deletions(-)
Title: Image Processing for Simulated Cameras
Description: Uses convolution-based techniques to generate simulated camera bokeh, depth of field, and other camera effects, using an image and an optional depth map. Accepts both filename inputs and in-memory array representations of images and matrices. Includes functions to perform 2D convolutions, reorient and resize images/matrices, add image and text overlays, generate camera vignette effects, and add titles to images.
Author: Tyler Morgan-Wall [aut, cph, cre]
,
Sean Barrett [ctb, cph]
Maintainer: Tyler Morgan-Wall <tylermw@gmail.com>
Diff between rayimage versions 0.11.0 dated 2024-07-13 and 0.15.1 dated 2025-02-01
rayimage-0.11.0/rayimage/R/add_image_overlay.R |only rayimage-0.11.0/rayimage/R/add_title.R |only rayimage-0.11.0/rayimage/R/add_vignette.R |only rayimage-0.15.1/rayimage/DESCRIPTION | 15 +- rayimage-0.15.1/rayimage/MD5 | 65 +++++++----- rayimage-0.15.1/rayimage/NAMESPACE | 7 + rayimage-0.15.1/rayimage/R/add_padding.R | 70 ++++++------- rayimage-0.15.1/rayimage/R/get_string_dimensions.R |only rayimage-0.15.1/rayimage/R/handle_image_output.R |only rayimage-0.15.1/rayimage/R/plot_asp_native_raster.R | 47 +++++---- rayimage-0.15.1/rayimage/R/plot_image.R | 29 +++-- rayimage-0.15.1/rayimage/R/plot_image_grid.R | 9 + rayimage-0.15.1/rayimage/R/ray_read_image.R | 13 +- rayimage-0.15.1/rayimage/R/ray_write_image.R | 32 +++--- rayimage-0.15.1/rayimage/R/render_bokeh.R | 17 --- rayimage-0.15.1/rayimage/R/render_bw.R | 18 --- rayimage-0.15.1/rayimage/R/render_convolution.R | 11 -- rayimage-0.15.1/rayimage/R/render_convolution_fft.R | 11 -- rayimage-0.15.1/rayimage/R/render_image_overlay.R |only rayimage-0.15.1/rayimage/R/render_reorient.R | 16 --- rayimage-0.15.1/rayimage/R/render_resized.R | 19 --- rayimage-0.15.1/rayimage/R/render_text_image.R |only rayimage-0.15.1/rayimage/R/render_title.R |only rayimage-0.15.1/rayimage/R/render_vignette.R |only rayimage-0.15.1/rayimage/man/add_image_overlay.Rd | 31 ------ rayimage-0.15.1/rayimage/man/add_multi_padding.Rd | 6 - rayimage-0.15.1/rayimage/man/add_padding.Rd | 6 - rayimage-0.15.1/rayimage/man/add_title.Rd | 87 +---------------- rayimage-0.15.1/rayimage/man/add_vignette.Rd | 48 --------- rayimage-0.15.1/rayimage/man/get_string_dimensions.Rd |only rayimage-0.15.1/rayimage/man/handle_image_output.Rd |only rayimage-0.15.1/rayimage/man/plot_asp_native_raster.Rd | 8 + rayimage-0.15.1/rayimage/man/plot_image.Rd | 8 + rayimage-0.15.1/rayimage/man/plot_image_grid.Rd | 10 + rayimage-0.15.1/rayimage/man/render_bw.Rd | 2 rayimage-0.15.1/rayimage/man/render_image_overlay.Rd |only rayimage-0.15.1/rayimage/man/render_resized.Rd | 8 - rayimage-0.15.1/rayimage/man/render_text_image.Rd |only rayimage-0.15.1/rayimage/man/render_title.Rd |only rayimage-0.15.1/rayimage/man/render_vignette.Rd |only rayimage-0.15.1/rayimage/man/trim_padding.Rd | 6 - 41 files changed, 229 insertions(+), 370 deletions(-)
Title: Genetic Analysis of Pooled Samples
Description: Analyzing genetic data obtained from pooled samples.
This package can read in Fragment Analysis output files, process the data,
and score peaks, as well as facilitate various analyses, including cluster
analysis, calculation of genetic distances and diversity indices,
as well as bootstrap resampling for statistical inference. Specifically
tailored to handle genetic data efficiently, researchers can explore
population structure, genetic differentiation, and genetic relatedness
among samples. We updated some functions from Covarrubias-Pazaran et al.
(2016) <doi:10.1186/s12863-016-0365-6> to allow for the use of new file formats
and referenced the following to write our genetic analysis functions:
Long et al. (2022) <doi:10.1038/s41598-022-04776-0>, Jost (2008)
<doi:10.1111/j.1365-294x.2008.03887.x>, Nei (1973)
<doi:10.1073/pnas.70.12.3321>, Foulley et al. (2006)
<doi:10.1016/j.livprodsci.2005.10.021>, Chao et al. (2008)
<doi:10.1111/j.1541-0420.2008.01010 [...truncated...]
Author: Kathleen Kuesters [aut, cre, cph]
,
Jeffrey Long [aut],
Jessica Blanton [aut],
Walter Blank [ctb],
Jeffrey Kovach [ctb],
Ronald Blanton [ctb]
Maintainer: Kathleen Kuesters <kathleen.kuesters@gmail.com>
Diff between pooledpeaks versions 1.0.7 dated 2024-11-19 and 1.1.0 dated 2025-02-01
DESCRIPTION | 9 ++++---- MD5 | 17 ++++++++++++--- NEWS.md | 2 + README.md | 50 ++++++++++++++++++++++++++++++++++++--------- build/vignette.rds |only inst/doc |only inst/paper.html |only inst/paper.md |only inst/pooledpeaks_paper.bib |only vignettes |only 10 files changed, 61 insertions(+), 17 deletions(-)
Title: Gene by Environment Interaction and Conditional Gene Tests for
Nuclear Families
Description: Does family-based gene by environment interaction tests, joint gene, gene-environment interaction test, and a test of a set of genes conditional on another set of genes.
Author: Thomas Hoffmann [aut, cre]
Maintainer: Thomas Hoffmann <tjhoffm@gmail.com>
Diff between fbati versions 1.0-9 dated 2024-02-02 and 1.0-11 dated 2025-02-01
fbati-1.0-11/fbati/DESCRIPTION | 17 +- fbati-1.0-11/fbati/MD5 | 30 ++-- fbati-1.0-11/fbati/NAMESPACE | 2 fbati-1.0-11/fbati/R/cpp_cgFbat.R |only fbati-1.0-11/fbati/R/cpp_datamatrix.R |only fbati-1.0-11/fbati/R/cpp_fbatdist.R |only fbati-1.0-11/fbati/R/cpp_joint.R |only fbati-1.0-11/fbati/R/cpp_nuclify.R |only fbati-1.0-11/fbati/R/fbatcStrategyStep.R | 2 fbati-1.0-11/fbati/R/fbati.R | 215 ++++++++++++++++++++++++++++--- fbati-1.0-11/fbati/R/ibat.R | 6 fbati-1.0-11/fbati/R/joint.R | 59 ++++++-- fbati-1.0-11/fbati/R/merge.R | 111 ++++++++-------- fbati-1.0-11/fbati/man/fbatge.Rd | 10 - fbati-1.0-11/fbati/man/fbati.Rd | 10 - fbati-1.0-11/fbati/man/launchpad.Rd | 1 fbati-1.0-11/fbati/src/fbati_init.c | 4 fbati-1.0-9/fbati/man/fbatj.Rd |only fbati-1.0-9/fbati/src/fbati.cpp |only fbati-1.0-9/fbati/src/fbati.h |only 20 files changed, 350 insertions(+), 117 deletions(-)
Title: Centered Isotonic Regression and Dose-Response Utilities
Description: Isotonic regression (IR) and its improvement: centered isotonic regression (CIR). CIR is recommended in particular with small samples. Also, interval estimates for both, and additional utilities such as plotting dose-response data. For dev version and change history, see GitHub assaforon/cir.
Author: Assaf P. Oron [cre, aut]
Maintainer: Assaf P. Oron <assaf.oron@gmail.com>
Diff between cir versions 2.5.0 dated 2024-12-02 and 2.5.1 dated 2025-02-01
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/invCIR.r | 14 ++++---------- inst/doc/BenHamou03.html | 4 ++-- man/doseFind.Rd | 4 ++-- 5 files changed, 16 insertions(+), 22 deletions(-)
Title: Various Methods for the Two Sample Problem
Description: The routine twosample_test() in this package runs the
two sample test using various test statistic. The p values are
found via permutation or large sample theory. The routine twosample_power() allows the
calculation of the power in various cases, and plot_power() draws the corresponding power graphs.
The routine run.studies allows a user to quickly study the power of a new method and
how it compares to some of the standard ones.
Author: Wolfgang Rolke [aut, cre]
Maintainer: Wolfgang Rolke <wolfgang.rolke@upr.edu>
Diff between R2sample versions 2.2.0 dated 2024-10-21 and 3.0.0 dated 2025-02-01
R2sample-2.2.0/R2sample/inst/extdata |only R2sample-3.0.0/R2sample/DESCRIPTION | 18 R2sample-3.0.0/R2sample/MD5 | 54 +- R2sample-3.0.0/R2sample/NAMESPACE | 28 + R2sample-3.0.0/R2sample/NEWS.md | 4 R2sample-3.0.0/R2sample/R/R2sample-package.R |only R2sample-3.0.0/R2sample/R/RcppExports.R | 11 R2sample-3.0.0/R2sample/R/case.studies.R |only R2sample-3.0.0/R2sample/R/chi_power.R | 4 R2sample-3.0.0/R2sample/R/chi_test.R | 8 R2sample-3.0.0/R2sample/R/data.R |only R2sample-3.0.0/R2sample/R/plot_power.R | 2 R2sample-3.0.0/R2sample/R/power_newtest.R |only R2sample-3.0.0/R2sample/R/run.studies.R |only R2sample-3.0.0/R2sample/R/twosample_power.R | 27 - R2sample-3.0.0/R2sample/build/vignette.rds |binary R2sample-3.0.0/R2sample/data |only R2sample-3.0.0/R2sample/inst/doc/R2sample.R | 85 ++- R2sample-3.0.0/R2sample/inst/doc/R2sample.Rmd | 150 ++++++ R2sample-3.0.0/R2sample/inst/doc/R2sample.html | 228 ++++++++-- R2sample-3.0.0/R2sample/inst/shiny-example/r2sample_shiny/server.R | 6 R2sample-3.0.0/R2sample/inst/shiny-example/r2sample_shiny/ui.R | 4 R2sample-3.0.0/R2sample/man/R2sample-package.Rd |only R2sample-3.0.0/R2sample/man/case.studies.Rd |only R2sample-3.0.0/R2sample/man/myTS2.Rd |only R2sample-3.0.0/R2sample/man/plot_power.Rd | 2 R2sample-3.0.0/R2sample/man/power_newtest.Rd |only R2sample-3.0.0/R2sample/man/power_studies_results.Rd |only R2sample-3.0.0/R2sample/man/pvaluecdf.Rd |only R2sample-3.0.0/R2sample/man/run.studies.Rd |only R2sample-3.0.0/R2sample/man/twosample_power.Rd | 4 R2sample-3.0.0/R2sample/src/RcppExports.cpp | 14 R2sample-3.0.0/R2sample/src/TS_cont.cpp | 2 R2sample-3.0.0/R2sample/src/myTS2.cpp |only R2sample-3.0.0/R2sample/vignettes/R2sample.Rmd | 150 ++++++ 35 files changed, 656 insertions(+), 145 deletions(-)
Title: Constrained, Covariance-Matching Constrained and Universal Point
or Block Kriging
Description: Provides functions for efficient computation of non-linear spatial predictions with local change of support (Hofer, C. and Papritz, A. (2011) "constrainedKriging: An R-package for customary, constrained and covariance-matching constrained point or block kriging" <doi:10.1016/j.cageo.2011.02.009>). This package supplies functions for two-dimensional spatial interpolation by constrained (Cressie, N. (1993) "Aggregation in geostatistical problems" <doi:10.1007/978-94-011-1739-5_3>), covariance-matching constrained (Aldworth, J. and Cressie, N. (2003) "Prediction of nonlinear spatial functionals" <doi:10.1016/S0378-3758(02)00321-X>) and universal (external drift) Kriging for points or blocks of any shape from data with a non-stationary mean function and an isotropic weakly stationary covariance function. The linear spatial interpolation methods, constrained and covariance-matching constrained Kriging, provide approximately unbiased prediction for non-linear target value [...truncated...]
Author: Christoph Hofer [aut],
Andreas Papritz [ctb, cre]
Maintainer: Andreas Papritz <papritz@retired.ethz.ch>
Diff between constrainedKriging versions 0.2-9 dated 2025-01-07 and 0.2-10 dated 2025-02-01
DESCRIPTION | 10 MD5 | 26 - R/f.pixelgrid.sfc.R | 9 R/f.point.rec.covmat.R | 7 inst/ChangeLog.txt | 18 man/CKrige.Rd | 42 +- man/ckcolors.Rd | 2 man/covmodel.Rd | 11 src/covariancefunctions.h | 656 ++++++++++++++++--------------- src/freqdist.h | 219 +++++----- src/init.c | 20 src/intboundaries.h | 916 ++++++++++++++++++++++---------------------- src/point_block_cov.c | 951 +++++++++++++++++++++++----------------------- src/scalePixelCoord.h | 127 +++--- 14 files changed, 1562 insertions(+), 1452 deletions(-)
More information about constrainedKriging at CRAN
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Title: Spatiotemporal Arrays, Raster and Vector Data Cubes
Description: Reading, manipulating, writing and plotting
spatiotemporal arrays (raster and vector data cubes) in 'R', using 'GDAL'
bindings provided by 'sf', and 'NetCDF' bindings by 'ncmeta' and 'RNetCDF'.
Author: Edzer Pebesma [aut, cre] ,
Michael Sumner [ctb] ,
Etienne Racine [ctb],
Adriano Fantini [ctb],
David Blodgett [ctb],
Krzysztof Dyba [ctb]
Maintainer: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Diff between stars versions 0.6-7 dated 2024-11-07 and 0.6-8 dated 2025-02-01
DESCRIPTION | 6 +- MD5 | 94 +++++++++++++++++++++---------------------- NEWS.md | 10 ++++ R/dimensions.R | 11 +++-- R/plot.R | 7 +-- R/proxy.R | 4 + R/spatstat.R | 8 +++ R/stars.R | 21 ++++++--- R/tidyverse.R | 2 R/warp.R | 11 +---- build/vignette.rds |binary inst/doc/stars1.html | 6 +- inst/doc/stars2.R | 12 ++--- inst/doc/stars2.html | 12 ++--- inst/doc/stars4.R | 2 inst/doc/stars4.html | 2 man/plot.Rd | 2 tests/aggregate.Rout.save | 8 +-- tests/align.Rout.save | 6 +- tests/area.Rout.save | 6 +- tests/crop.Rout.save | 6 +- tests/curvilinear.Rout.save | 6 +- tests/datasets.Rout.save | 6 +- tests/dimensions.Rout.save | 6 +- tests/downsample.Rout.save | 6 +- tests/ee.Rout.save | 6 +- tests/extract.Rout.save | 6 +- tests/gridtypes.Rout.save | 6 +- tests/mdim.Rout.save | 6 +- tests/nc.Rout.save | 6 +- tests/plot.Rout.save | 6 +- tests/predict.Rout.save | 10 ++-- tests/proxy.Rout.save | 22 +++++----- tests/raster.Rout.save | 6 +- tests/rasterize.Rout.save | 6 +- tests/rectilinear.Rout.save | 6 +- tests/redimension.Rout.save | 6 +- tests/sf.Rout.save | 6 +- tests/sp.Rout.save | 6 +- tests/spacetime.Rout.save | 6 +- tests/spatstat.Rout.save | 6 +- tests/stars.Rout.save | 6 +- tests/subset.Rout.save | 6 +- tests/testthat/test-cubble.R | 4 + tests/tidy.Rout.save | 6 +- tests/transform.Rout.save | 8 +-- tests/warp.Rout.save | 6 +- tests/write.Rout.save | 6 +- 48 files changed, 222 insertions(+), 196 deletions(-)
Title: 1d Goodness of Fit Tests
Description: Routines that allow the user to run a large number of goodness-of-fit tests.
It allows for data to be continuous or discrete. It includes routines to estimate
the power of the tests and display them as a power graph.
The routine run.studies allows a user to quickly study the power of a new method and
how it compares to some of the standard ones.
Author: Wolfgang Rolke [aut, cre]
Maintainer: Wolfgang Rolke <wolfgang.rolke@upr.edu>
Diff between Rgof versions 2.1.1 dated 2024-10-21 and 3.0.0 dated 2025-02-01
Rgof-2.1.1/Rgof/inst/extdata |only Rgof-3.0.0/Rgof/DESCRIPTION | 17 - Rgof-3.0.0/Rgof/MD5 | 91 +++--- Rgof-3.0.0/Rgof/NAMESPACE | 26 + Rgof-3.0.0/Rgof/NEWS.md | 4 Rgof-3.0.0/Rgof/R/RcppExports.R | 43 +-- Rgof-3.0.0/Rgof/R/Rgof-package.R |only Rgof-3.0.0/Rgof/R/case.studies.R |only Rgof-3.0.0/Rgof/R/check.functions.R | 4 Rgof-3.0.0/Rgof/R/data.R |only Rgof-3.0.0/Rgof/R/gof_power.R | 6 Rgof-3.0.0/Rgof/R/gof_power_cont.R | 49 +-- Rgof-3.0.0/Rgof/R/gof_power_disc.R | 29 -- Rgof-3.0.0/Rgof/R/gof_test.R | 7 Rgof-3.0.0/Rgof/R/gof_test_cont.R | 25 - Rgof-3.0.0/Rgof/R/gof_test_cont_adj.R | 67 +--- Rgof-3.0.0/Rgof/R/gof_test_disc.R | 14 Rgof-3.0.0/Rgof/R/gof_test_disc_adj.R | 42 +- Rgof-3.0.0/Rgof/R/make_bins_cont.R | 4 Rgof-3.0.0/Rgof/R/make_bins_disc.R | 2 Rgof-3.0.0/Rgof/R/power_newtest.R |only Rgof-3.0.0/Rgof/R/run.studies.R |only Rgof-3.0.0/Rgof/build/vignette.rds |binary Rgof-3.0.0/Rgof/data |only Rgof-3.0.0/Rgof/inst/doc/Rgof.R | 100 ++++--- Rgof-3.0.0/Rgof/inst/doc/Rgof.Rmd | 214 ++++++++++++--- Rgof-3.0.0/Rgof/inst/doc/Rgof.html | 381 ++++++++++++++++++++------- Rgof-3.0.0/Rgof/man/Rgof-package.Rd |only Rgof-3.0.0/Rgof/man/TS_cont.Rd | 7 Rgof-3.0.0/Rgof/man/TS_disc.Rd | 7 Rgof-3.0.0/Rgof/man/TSw_cont.Rd | 6 Rgof-3.0.0/Rgof/man/TSw_disc.Rd | 6 Rgof-3.0.0/Rgof/man/case.studies.Rd |only Rgof-3.0.0/Rgof/man/newTSdisc.Rd |only Rgof-3.0.0/Rgof/man/power_newtest.Rd |only Rgof-3.0.0/Rgof/man/power_studies_results.Rd |only Rgof-3.0.0/Rgof/man/pvaluecdf.Rd |only Rgof-3.0.0/Rgof/man/run.studies.Rd |only Rgof-3.0.0/Rgof/src/RcppExports.cpp | 66 ++-- Rgof-3.0.0/Rgof/src/TS_cont.cpp | 29 +- Rgof-3.0.0/Rgof/src/TS_cont.h | 2 Rgof-3.0.0/Rgof/src/TS_disc.cpp | 22 + Rgof-3.0.0/Rgof/src/TS_disc.h | 3 Rgof-3.0.0/Rgof/src/TSw_cont.cpp | 14 Rgof-3.0.0/Rgof/src/TSw_cont.h | 2 Rgof-3.0.0/Rgof/src/TSw_disc.cpp | 21 + Rgof-3.0.0/Rgof/src/TSw_disc.h | 5 Rgof-3.0.0/Rgof/src/gof_cont.cpp | 18 - Rgof-3.0.0/Rgof/src/gof_disc.cpp | 23 - Rgof-3.0.0/Rgof/src/newTSdisc.cpp |only Rgof-3.0.0/Rgof/src/newTSdisc.h |only Rgof-3.0.0/Rgof/src/power_cont.cpp | 10 Rgof-3.0.0/Rgof/src/power_disc.cpp | 7 Rgof-3.0.0/Rgof/vignettes/Rgof.Rmd | 214 ++++++++++++--- 54 files changed, 1104 insertions(+), 483 deletions(-)
Title: Knowledge Graphs Constructions and Visualizations
Description: Knowledge graphs enable to efficiently visualize and gain insights into large-scale data analysis results, as p-values from multiple studies or embedding data matrices. The usual workflow is a user providing a data frame of association studies results and specifying target nodes, e.g. phenotypes, to visualize. The knowledge graph then shows all the features which are significantly associated with the phenotype, with the edges being proportional to the association scores. As the user adds several target nodes and grouping information about the nodes such as biological pathways, the construction of such graphs soon becomes complex. The 'kgraph' package aims to enable users to easily build such knowledge graphs, and provides two main features: first, to enable building a knowledge graph based on a data frame of concepts relationships, be it p-values or cosine similarities; second, to enable determining an appropriate cut-off on cosine similarities from a complete embedding matrix, to enab [...truncated...]
Author: Thomas Charlon [aut, cre] ,
Hongyi Yuan [ctb] ,
CELEHS [aut] ,
PARSE Health [aut]
Maintainer: Thomas Charlon <charlon@protonmail.com>
Diff between kgraph versions 1.0.0 dated 2024-09-20 and 1.0.1 dated 2025-02-01
kgraph-1.0.0/kgraph/inst/extdata |only kgraph-1.0.0/kgraph/inst/scripts |only kgraph-1.0.1/kgraph/DESCRIPTION | 8 ++--- kgraph-1.0.1/kgraph/MD5 | 37 +++++++++++---------------- kgraph-1.0.1/kgraph/R/df_cuis_pairs.R | 5 ++- kgraph-1.0.1/kgraph/R/df_embeds_dict.R | 2 + kgraph-1.0.1/kgraph/R/df_pval.R | 2 + kgraph-1.0.1/kgraph/R/df_pval_dict.R | 2 + kgraph-1.0.1/kgraph/R/m_embeds.R | 2 + kgraph-1.0.1/kgraph/R/sparse_encodes.R | 4 -- kgraph-1.0.1/kgraph/R/svd_pmi.R | 30 +++++++++++++++++++-- kgraph-1.0.1/kgraph/inst/doc/kgraph.Rmd | 15 ++++++++++ kgraph-1.0.1/kgraph/inst/doc/kgraph.html | 41 ++++++++++++++++++------------ kgraph-1.0.1/kgraph/man/df_cuis_pairs.Rd | 5 ++- kgraph-1.0.1/kgraph/man/df_embeds_dict.Rd | 2 + kgraph-1.0.1/kgraph/man/df_pval.Rd | 2 + kgraph-1.0.1/kgraph/man/df_pval_dict.Rd | 2 + kgraph-1.0.1/kgraph/man/m_embeds.Rd | 2 + kgraph-1.0.1/kgraph/vignettes/kgraph.Rmd | 15 ++++++++++ 19 files changed, 123 insertions(+), 53 deletions(-)
Title: Advanced Toolset for Efficient Time Series Dissimilarity
Analysis
Description: Fast C++ implementation of Dynamic Time Warping for time series dissimilarity analysis, with applications in environmental monitoring and sensor data analysis, climate science, signal processing and pattern recognition, and financial data analysis. Built upon the ideas presented in Benito and Birks (2020) <doi:10.1111/ecog.04895>, provides tools for analyzing time series of varying lengths and structures, including irregular multivariate time series. Key features include individual variable contribution analysis, restricted permutation tests for statistical significance, and imputation of missing data via GAMs. Additionally, the package provides an ample set of tools to prepare and manage time series data.
Author: Blas M. Benito [aut, cre, cph]
Maintainer: Blas M. Benito <blasbenito@gmail.com>
Diff between distantia versions 2.0.1 dated 2025-01-23 and 2.0.2 dated 2025-02-01
DESCRIPTION | 6 +- MD5 | 14 ++--- NEWS.md | 4 + R/zoo_plot.R | 13 +--- README.md | 96 +++++++++++++++++------------------ inst/CITATION | 2 man/zoo_plot.Rd | 3 + tests/testthat/test-utils_new_time.R | 9 ++- 8 files changed, 77 insertions(+), 70 deletions(-)
Title: Predictions, Comparisons, Slopes, Marginal Means, and Hypothesis
Tests
Description: Compute and plot predictions, slopes, marginal means, and comparisons (contrasts, risk ratios, odds, etc.) for over 100 classes of statistical and machine learning models in R. Conduct linear and non-linear hypothesis tests, or equivalence tests. Calculate uncertainty estimates using the delta method, bootstrapping, or simulation-based inference. Details can be found in Arel-Bundock, Greifer, and Heiss (2024) <doi:10.18637/jss.v111.i09>.
Author: Vincent Arel-Bundock [aut, cre, cph]
,
Noah Greifer [ctb] ,
Etienne Bacher [ctb] ,
Grant McDermott [ctb] ,
Andrew Heiss [ctb]
Maintainer: Vincent Arel-Bundock <vincent.arel-bundock@umontreal.ca>
Diff between marginaleffects versions 0.24.0 dated 2024-11-25 and 0.25.0 dated 2025-02-01
marginaleffects-0.24.0/marginaleffects/R/deprecated.R |only marginaleffects-0.24.0/marginaleffects/R/get_hypothesis.R |only marginaleffects-0.24.0/marginaleffects/R/get_term_labels.R |only marginaleffects-0.24.0/marginaleffects/R/hypothesis_helper.R |only marginaleffects-0.24.0/marginaleffects/man/datagridcf.Rd |only marginaleffects-0.24.0/marginaleffects/man/deltamethod.Rd |only marginaleffects-0.24.0/marginaleffects/man/marginal_means.Rd |only marginaleffects-0.24.0/marginaleffects/man/marginaleffects.Rd |only marginaleffects-0.24.0/marginaleffects/man/marginalmeans.Rd |only marginaleffects-0.24.0/marginaleffects/man/meffects.Rd |only marginaleffects-0.25.0/marginaleffects/DESCRIPTION | 62 +- marginaleffects-0.25.0/marginaleffects/MD5 | 145 +++--- marginaleffects-0.25.0/marginaleffects/NAMESPACE | 23 - marginaleffects-0.25.0/marginaleffects/NEWS.md | 83 ++- marginaleffects-0.25.0/marginaleffects/R/bootstrap_boot.R | 24 - marginaleffects-0.25.0/marginaleffects/R/broom.R | 15 marginaleffects-0.25.0/marginaleffects/R/ci.R | 12 marginaleffects-0.25.0/marginaleffects/R/comparisons.R | 46 -- marginaleffects-0.25.0/marginaleffects/R/conformal.R | 2 marginaleffects-0.25.0/marginaleffects/R/datagrid.R | 28 - marginaleffects-0.25.0/marginaleffects/R/get_coef.R | 14 marginaleffects-0.25.0/marginaleffects/R/get_contrasts.R | 20 marginaleffects-0.25.0/marginaleffects/R/get_dataset.R |only marginaleffects-0.25.0/marginaleffects/R/get_draws.R | 15 marginaleffects-0.25.0/marginaleffects/R/get_labels.R |only marginaleffects-0.25.0/marginaleffects/R/get_model_matrix_attribute.R | 2 marginaleffects-0.25.0/marginaleffects/R/get_modeldata.R | 14 marginaleffects-0.25.0/marginaleffects/R/get_se_delta.R | 15 marginaleffects-0.25.0/marginaleffects/R/get_vcov.R | 29 + marginaleffects-0.25.0/marginaleffects/R/hypotheses.R | 129 ++--- marginaleffects-0.25.0/marginaleffects/R/hypotheses_joint.R | 5 marginaleffects-0.25.0/marginaleffects/R/hypothesis.R |only marginaleffects-0.25.0/marginaleffects/R/hypothesis_formula.R |only marginaleffects-0.25.0/marginaleffects/R/hypothesis_function.R |only marginaleffects-0.25.0/marginaleffects/R/hypothesis_matrix.R |only marginaleffects-0.25.0/marginaleffects/R/hypothesis_string.R |only marginaleffects-0.25.0/marginaleffects/R/matrix_apply.R |only marginaleffects-0.25.0/marginaleffects/R/methods.R | 30 - marginaleffects-0.25.0/marginaleffects/R/methods_MCMCglmm.R | 4 marginaleffects-0.25.0/marginaleffects/R/methods_gamlss.R | 2 marginaleffects-0.25.0/marginaleffects/R/methods_glmmTMB.R | 143 +++--- marginaleffects-0.25.0/marginaleffects/R/methods_lme4.R | 35 - marginaleffects-0.25.0/marginaleffects/R/methods_mclogit.R | 16 marginaleffects-0.25.0/marginaleffects/R/methods_quantreg.R | 2 marginaleffects-0.25.0/marginaleffects/R/methods_rstpm2.R | 2 marginaleffects-0.25.0/marginaleffects/R/multcomp.R |only marginaleffects-0.25.0/marginaleffects/R/package.R | 8 marginaleffects-0.25.0/marginaleffects/R/plot_build.R | 12 marginaleffects-0.25.0/marginaleffects/R/plot_comparisons.R | 28 - marginaleffects-0.25.0/marginaleffects/R/plot_predictions.R | 30 + marginaleffects-0.25.0/marginaleffects/R/plot_slopes.R | 15 marginaleffects-0.25.0/marginaleffects/R/predictions.R | 55 -- marginaleffects-0.25.0/marginaleffects/R/print.R | 168 +++---- marginaleffects-0.25.0/marginaleffects/R/recall.R | 19 marginaleffects-0.25.0/marginaleffects/R/sanitize_hypothesis.R | 12 marginaleffects-0.25.0/marginaleffects/R/sanitize_hypothesis_formula.R | 62 ++ marginaleffects-0.25.0/marginaleffects/R/sanitize_newdata.R | 157 ++---- marginaleffects-0.25.0/marginaleffects/R/sanitize_variables.R | 11 marginaleffects-0.25.0/marginaleffects/R/sanity.R | 7 marginaleffects-0.25.0/marginaleffects/R/sanity_dots.R | 32 - marginaleffects-0.25.0/marginaleffects/R/slopes.R | 82 +-- marginaleffects-0.25.0/marginaleffects/R/sort.R | 10 marginaleffects-0.25.0/marginaleffects/R/type_dictionary.R | 6 marginaleffects-0.25.0/marginaleffects/R/unpack_matrix_cols.R | 14 marginaleffects-0.25.0/marginaleffects/R/utils.R | 17 marginaleffects-0.25.0/marginaleffects/README.md | 3 marginaleffects-0.25.0/marginaleffects/build/vignette.rds |only marginaleffects-0.25.0/marginaleffects/inst/WORDLIST | 229 +++++----- marginaleffects-0.25.0/marginaleffects/inst/doc |only marginaleffects-0.25.0/marginaleffects/man/comparisons.Rd | 87 ++- marginaleffects-0.25.0/marginaleffects/man/get_coef.Rd | 2 marginaleffects-0.25.0/marginaleffects/man/get_dataset.Rd |only marginaleffects-0.25.0/marginaleffects/man/get_draws.Rd | 3 marginaleffects-0.25.0/marginaleffects/man/get_vcov.Rd | 2 marginaleffects-0.25.0/marginaleffects/man/hypotheses.Rd | 69 +-- marginaleffects-0.25.0/marginaleffects/man/knit_print.marginaleffects.Rd | 2 marginaleffects-0.25.0/marginaleffects/man/plot_comparisons.Rd | 12 marginaleffects-0.25.0/marginaleffects/man/plot_predictions.Rd | 11 marginaleffects-0.25.0/marginaleffects/man/plot_slopes.Rd | 11 marginaleffects-0.25.0/marginaleffects/man/posterior_draws.Rd | 4 marginaleffects-0.25.0/marginaleffects/man/predictions.Rd | 84 ++- marginaleffects-0.25.0/marginaleffects/man/print.marginaleffects.Rd | 2 marginaleffects-0.25.0/marginaleffects/man/slopes.Rd | 85 ++- marginaleffects-0.25.0/marginaleffects/vignettes |only 84 files changed, 1175 insertions(+), 1093 deletions(-)
More information about marginaleffects at CRAN
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Title: Spatial Empirical Dynamic Modeling
Description: Inferring causal associations in cross-sectional earth system data with extensions to convergent cross mapping from Sugihara et al. (2012) <doi:10.1126/science.1227079> and partial cross mapping as described in Ma et al. (2020) <doi:10.1038/s41467-020-16238-0>.
Author: Wenbo Lv [aut, cre, cph]
Maintainer: Wenbo Lv <lyu.geosocial@gmail.com>
Diff between spEDM versions 1.2 dated 2025-01-14 and 1.3 dated 2025-02-01
spEDM-1.2/spEDM/R/ccm_formatoutput.R |only spEDM-1.2/spEDM/R/variable_check.R |only spEDM-1.3/spEDM/DESCRIPTION | 14 spEDM-1.3/spEDM/MD5 | 89 +++-- spEDM-1.3/spEDM/NAMESPACE | 6 spEDM-1.3/spEDM/NEWS.md | 28 + spEDM-1.3/spEDM/R/RcppExports.R | 116 ++++++- spEDM-1.3/spEDM/R/detectThreads.R |only spEDM-1.3/spEDM/R/embedded.R |only spEDM-1.3/spEDM/R/formatoutput_s3.R |only spEDM-1.3/spEDM/R/gccm.R | 67 ++-- spEDM-1.3/spEDM/R/globals.R | 2 spEDM-1.3/spEDM/R/scpcm.R |only spEDM-1.3/spEDM/R/simplex.R |only spEDM-1.3/spEDM/R/smap.R |only spEDM-1.3/spEDM/R/variable_check_prepare.R |only spEDM-1.3/spEDM/R/xmapdf.R | 42 ++ spEDM-1.3/spEDM/inst/doc/GCCM.Rmd | 203 ++++++++---- spEDM-1.3/spEDM/inst/doc/GCCM.html | 306 +++++++++++------- spEDM-1.3/spEDM/man/detectThreads.Rd |only spEDM-1.3/spEDM/man/embedded.Rd |only spEDM-1.3/spEDM/man/figures/gccm/fig1-1.png |binary spEDM-1.3/spEDM/man/figures/gccm/fig3-1.png |binary spEDM-1.3/spEDM/man/gccm.Rd | 35 +- spEDM-1.3/spEDM/man/simplex.Rd |only spEDM-1.3/spEDM/man/smap.Rd |only spEDM-1.3/spEDM/src/CppGridUtils.cpp | 137 ++++++-- spEDM-1.3/spEDM/src/CppGridUtils.h | 26 + spEDM-1.3/spEDM/src/CppLatticeUtils.cpp | 191 +++++++---- spEDM-1.3/spEDM/src/CppLatticeUtils.h | 12 spEDM-1.3/spEDM/src/CppStats.cpp | 459 +++++++++++++++++++++++++--- spEDM-1.3/spEDM/src/CppStats.h | 37 ++ spEDM-1.3/spEDM/src/Forecast4Grid.cpp |only spEDM-1.3/spEDM/src/Forecast4Grid.h |only spEDM-1.3/spEDM/src/Forecast4Lattice.cpp |only spEDM-1.3/spEDM/src/Forecast4Lattice.h |only spEDM-1.3/spEDM/src/GCCM4Grid.cpp | 107 +++++- spEDM-1.3/spEDM/src/GCCM4Grid.h | 12 spEDM-1.3/spEDM/src/GCCM4Lattice.cpp | 75 ++-- spEDM-1.3/spEDM/src/GCCM4Lattice.h | 22 - spEDM-1.3/spEDM/src/GridExp.cpp | 278 ++++++++++++++++ spEDM-1.3/spEDM/src/HelperFuns.cpp |only spEDM-1.3/spEDM/src/HelperFuns.h |only spEDM-1.3/spEDM/src/LatticeExp.cpp | 303 ++++++++++++++++-- spEDM-1.3/spEDM/src/Makevars | 6 spEDM-1.3/spEDM/src/Makevars.win | 6 spEDM-1.3/spEDM/src/RcppExports.cpp | 433 ++++++++++++++++++++++++-- spEDM-1.3/spEDM/src/SCPCM4Grid.cpp |only spEDM-1.3/spEDM/src/SCPCM4Grid.h |only spEDM-1.3/spEDM/src/SCPCM4Lattice.cpp |only spEDM-1.3/spEDM/src/SCPCM4Lattice.h |only spEDM-1.3/spEDM/src/SMap.cpp |only spEDM-1.3/spEDM/src/SMap.h |only spEDM-1.3/spEDM/src/SimplexProjection.cpp | 83 ++++- spEDM-1.3/spEDM/src/SimplexProjection.h | 34 +- spEDM-1.3/spEDM/src/StatsExp.cpp |only spEDM-1.3/spEDM/src/spEDMDataStruct.h |only spEDM-1.3/spEDM/vignettes/GCCM.Rmd | 203 ++++++++---- spEDM-1.3/spEDM/vignettes/GCCM.Rmd.orig | 51 ++- 59 files changed, 2733 insertions(+), 650 deletions(-)
Title: R and C++ Interfaces to 'spdlog' C++ Header Library for Logging
Description: The mature and widely-used C++ logging library 'spdlog' by Gabi Melman provides
many desirable features. This package bundles these header files for easy use by R packages
from both their R and C or C++ code. Explicit use via 'LinkingTo:' is also supported. Also
see the 'spdl' package which enhanced this package with a consistent R and C++ interface.
Author: Dirk Eddelbuettel [aut, cre] ,
Gabi Melman [aut] ,
Victor Zverovic [aut]
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppSpdlog versions 0.0.19 dated 2024-11-11 and 0.0.20 dated 2025-02-01
ChangeLog | 11 DESCRIPTION | 8 MD5 | 69 build/partial.rdb |binary inst/NEWS.Rd | 7 inst/examples/exampleFour.cpp |only inst/include/spdlog/cfg/env.h | 4 inst/include/spdlog/common.h | 7 inst/include/spdlog/details/file_helper-inl.h | 3 inst/include/spdlog/details/os-inl.h | 12 inst/include/spdlog/details/os.h | 4 inst/include/spdlog/fmt/bin_to_hex.h | 2 inst/include/spdlog/fmt/bundled/args.h | 48 inst/include/spdlog/fmt/bundled/base.h | 3316 ++++++++++----------- inst/include/spdlog/fmt/bundled/chrono.h | 846 ++--- inst/include/spdlog/fmt/bundled/color.h | 42 inst/include/spdlog/fmt/bundled/compile.h | 70 inst/include/spdlog/fmt/bundled/format-inl.h | 109 inst/include/spdlog/fmt/bundled/format.h | 2373 ++++++--------- inst/include/spdlog/fmt/bundled/os.h | 98 inst/include/spdlog/fmt/bundled/ostream.h | 131 inst/include/spdlog/fmt/bundled/printf.h | 237 - inst/include/spdlog/fmt/bundled/ranges.h | 228 - inst/include/spdlog/fmt/bundled/std.h | 121 inst/include/spdlog/fmt/bundled/xchar.h | 143 inst/include/spdlog/sinks/ansicolor_sink-inl.h | 18 inst/include/spdlog/sinks/ansicolor_sink.h | 7 inst/include/spdlog/sinks/basic_file_sink-inl.h | 6 inst/include/spdlog/sinks/basic_file_sink.h | 1 inst/include/spdlog/sinks/daily_file_sink.h | 1 inst/include/spdlog/sinks/null_sink.h | 2 inst/include/spdlog/sinks/rotating_file_sink-inl.h | 6 inst/include/spdlog/sinks/rotating_file_sink.h | 1 inst/include/spdlog/sinks/stdout_sinks-inl.h | 9 inst/include/spdlog/tweakme.h | 7 inst/include/spdlog/version.h | 2 36 files changed, 3802 insertions(+), 4147 deletions(-)
Title: Superefficient Estimation of Future Conditional Hazards Based on
Marker Information
Description: Provides a nonparametric smoothed kernel estimator for the future conditional hazard rate function when time-dependent covariates are present, a bandwidth selector for the estimator's implementation and pointwise and uniform confidence bands. Methods used in the package refer to Bagkavos, Isakson, Mammen, Nielsen and Proust-Lima (2025) <doi:10.1093/biomet/asaf008>.
Author: Dimitrios Bagkavos [aut, cre],
Alex Isakson [ctb],
Enno Mammen [ctb],
Jens Nielsen [ctb],
Cecile Proust-Lima [ctb]
Maintainer: Dimitrios Bagkavos <dimitrios.bagkavos@gmail.com>
Diff between HQM versions 0.1.4 dated 2024-12-12 and 1.0 dated 2025-02-01
DESCRIPTION | 8 ++++---- MD5 | 2 +- 2 files changed, 5 insertions(+), 5 deletions(-)
Title: Clean and Analyze Continuous Glucose Monitor Data
Description: This code provides several different functions for cleaning and analyzing continuous glucose monitor data. Currently it works with 'Dexcom', 'iPro 2', 'Diasend', 'Libre', or 'Carelink' data. The cleandata() function takes a directory of CGM data files and prepares them for analysis. cgmvariables() iterates through a directory of cleaned CGM data files and produces a single spreadsheet with data for each file in either rows or columns. The column format of this spreadsheet is compatible with REDCap data upload. cgmreport() also iterates through a directory of cleaned data, and produces PDFs of individual and aggregate AGP plots. Please visit <https://github.com/childhealthbiostatscore/R-Packages/> to download the new-user guide.
Author: Tim Vigers [aut, cre]
Maintainer: Tim Vigers <timothy.vigers@cuanschutz.edu>
Diff between cgmanalysis versions 3.0 dated 2025-01-30 and 3.0.1 dated 2025-02-01
DESCRIPTION | 6 +++--- MD5 | 4 ++-- R/cgmvariables.R | 17 ++++++++++++++++- 3 files changed, 21 insertions(+), 6 deletions(-)
Title: Wrapper for the 'CVD Prevent' Application Programming Interface
Description: Provides an R wrapper to the 'CVD Prevent' application
programming interface (API). Users can make API requests through
built-in R functions. The Cardiovascular Disease Prevention Audit
(CVDPREVENT) is an England-wide primary care audit that automatically
extracts routinely held GP health data.
<https://bmchealthdocs.atlassian.net/wiki/spaces/CP/pages/317882369/CVDPREVENT+API+Documentation>.
Author: Craig Parylo [aut, cre, cph] ,
Cardiovascular Disease Prevention Audit [ant]
Maintainer: Craig Parylo <craig.parylo2@nhs.net>
Diff between cvdprevent versions 0.2.0 dated 2024-10-16 and 0.2.1 dated 2025-02-01
DESCRIPTION | 7 MD5 | 20 NEWS.md | 2 R/cvd_api_functions.R | 4112 +-- README.md | 128 build/vignette.rds |binary inst/doc/using_cvdprevent.R | 608 inst/doc/using_cvdprevent.Rmd | 1196 - inst/doc/using_cvdprevent.html |33327 ++++++++++++++++---------------- tests/testthat/test-cvd_api_functions.R | 496 vignettes/using_cvdprevent.Rmd | 1196 - 11 files changed, 20665 insertions(+), 20427 deletions(-)
Title: Classes and Methods for Spatial Data
Description: Classes and methods for spatial
data; the classes document where the spatial location information
resides, for 2D or 3D data. Utility functions are provided, e.g. for
plotting data as maps, spatial selection, as well as methods for
retrieving coordinates, for subsetting, print, summary, etc. From this
version, 'rgdal', 'maptools', and 'rgeos' are no longer used at all,
see <https://r-spatial.org/r/2023/05/15/evolution4.html> for details.
Author: Edzer Pebesma [aut, cre],
Roger Bivand [aut],
Barry Rowlingson [ctb],
Virgilio Gomez-Rubio [ctb],
Robert Hijmans [ctb],
Michael Sumner [ctb],
Don MacQueen [ctb],
Jim Lemon [ctb],
Finn Lindgren [ctb],
Josh O'Brien [ctb],
Joseph O'Rourke [ctb],
Patrick [...truncated...]
Maintainer: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Diff between sp versions 2.1-4 dated 2024-04-30 and 2.2-0 dated 2025-02-01
sp-2.1-4/sp/demo/webmap.R |only sp-2.1-4/sp/inst/include |only sp-2.2-0/sp/DESCRIPTION | 10 sp-2.2-0/sp/MD5 | 59 ++-- sp-2.2-0/sp/build/vignette.rds |binary sp-2.2-0/sp/demo/00Index | 1 sp-2.2-0/sp/inst/NEWS.Rd | 11 sp-2.2-0/sp/inst/doc/CRS_warnings.html | 204 ++++++++-------- sp-2.2-0/sp/inst/doc/csdacm.R | 31 +- sp-2.2-0/sp/inst/doc/csdacm.Rnw | 5 sp-2.2-0/sp/inst/doc/csdacm.pdf |binary sp-2.2-0/sp/inst/doc/intro_sp.pdf |binary sp-2.2-0/sp/inst/doc/retiring_rgdal_geos_1.html | 295 ++++++++++++++---------- sp-2.2-0/sp/inst/doc/sp_gallery.R |only sp-2.2-0/sp/inst/doc/sp_gallery.Rmd |only sp-2.2-0/sp/inst/doc/sp_gallery.html |only sp-2.2-0/sp/man/GridsDatums.Rd | 4 sp-2.2-0/sp/man/bubble.Rd | 4 sp-2.2-0/sp/man/image.Rd | 2 sp-2.2-0/sp/man/mapasp.Rd | 2 sp-2.2-0/sp/man/spplot.Rd | 12 sp-2.2-0/sp/man/stack.Rd | 2 sp-2.2-0/sp/src/gcdist.c | 2 sp-2.2-0/sp/src/init.c | 2 sp-2.2-0/sp/src/pip.c | 8 sp-2.2-0/sp/src/pip2.c | 22 - sp-2.2-0/sp/src/sp.h | 62 ++--- sp-2.2-0/sp/src/sp_xports.c | 234 +++++++++---------- sp-2.2-0/sp/src/zerodist.c | 10 sp-2.2-0/sp/tests/grid.R | 6 sp-2.2-0/sp/tests/grid.Rout.save | 75 ------ sp-2.2-0/sp/vignettes/csdacm.Rnw | 5 sp-2.2-0/sp/vignettes/sp_gallery.Rmd |only 33 files changed, 549 insertions(+), 519 deletions(-)
Title: Remote Sensing Data Analysis
Description: Toolbox for remote sensing image processing and analysis such as
calculating spectral indexes, principal component transformation, unsupervised
and supervised classification or fractional cover analyses.
Author: Benjamin Leutner [aut] ,
Ned Horning [aut],
Jakob Schwalb-Willmann [aut] ,
Robert J. Hijmans [ctb] ,
Konstantin Mueller [aut, cre]
Maintainer: Konstantin Mueller <konstantinfinn.mueller@gmx.de>
Diff between RStoolbox versions 1.0.0 dated 2024-04-25 and 1.0.1 dated 2025-02-01
DESCRIPTION | 13 MD5 | 235 +- NAMESPACE | 228 +- NEWS.md | 553 ++--- R/RStoolbox-package.R | 274 +- R/RcppExports.R | 110 - R/classifyQA.R | 216 - R/cloudMask.R | 308 +- R/coregisterImages.R | 416 +-- R/encodeQA.R | 196 - R/estimateHaze.R | 268 +- R/fCover.R | 456 ++-- R/fortify-raster.R | 32 R/getMeta.R | 180 - R/getValidation.R | 144 - R/ggR.R | 392 +-- R/ggRGB.R | 470 ++-- R/histMatch.R | 280 +- R/internalFunctions.R | 895 ++++---- R/mesma.R | 355 +-- R/mlc.R | 166 - R/normImage.R | 102 R/oneHotEncode.R | 88 R/panSharpen.R | 188 - R/pifMatch.R | 238 +- R/radCor.R | 576 ++--- R/rasterCVA.R | 210 - R/rasterEntropy.R | 50 R/rasterPCA.R | 174 - R/readEE.R | 108 R/readMeta.R | 694 +++--- R/readSLI.R | 334 +-- R/rescaleImage.R | 212 - R/rsOpts.R | 38 R/sam.R | 126 - R/saveRSTBX.R | 178 - R/spectralIndices.R | 508 ++-- R/stackMeta.R | 204 - R/superClass.R | 1091 +++++----- R/tasseledCap.R | 138 - R/topCor.R | 512 ++-- R/unsuperClass.R | 358 +-- R/utils-pipe.R | 28 R/validateMap.R | 166 - R/zzz.R | 38 README.md | 460 ++-- inst/CITATION |only inst/external/EarthExplorer_LS8.txt | 106 inst/external/vegSpec.sli.hdr | 44 man/RStoolbox.Rd | 1 man/fortifySpatRaster.Rd | 46 man/lsat.Rd | 34 man/mesma.Rd | 4 man/pipe.Rd | 40 man/rlogo.Rd | 32 man/rsOpts.Rd | 6 man/sen2.Rd | 32 man/spectralIndices.Rd | 40 man/srtm.Rd | 32 man/srtm_sen2.Rd | 32 man/superClass.Rd | 1 src/RcppExports.cpp | 7 src/init.c | 4 src/spectralIndices.cpp | 86 src/tinyexpr.c |only src/tinyexpr.h |only tests/testthat.R | 12 tests/testthat/helper-testUtils.R | 34 tests/testthat/test-classifyQA.R | 56 tests/testthat/test-cloudMask.R | 30 tests/testthat/test-coregisterImages.R | 22 tests/testthat/test-encodeQA.R | 202 - tests/testthat/test-entropy.R | 32 tests/testthat/test-estimateHaze.R | 54 tests/testthat/test-fCover.R | 70 tests/testthat/test-gainOffsetRescale.R | 38 tests/testthat/test-getMeta.R | 52 tests/testthat/test-getValidation.R | 46 tests/testthat/test-ggplot.R | 188 - tests/testthat/test-histMatch.R | 24 tests/testthat/test-internalFunctions.R | 28 tests/testthat/test-mesma.R | 146 - tests/testthat/test-mlc.R | 50 tests/testthat/test-multicore.R | 78 tests/testthat/test-normImage.R | 92 tests/testthat/test-oneHotEncode.R | 52 tests/testthat/test-panSharpen.R | 34 tests/testthat/test-pifMatch.R | 38 tests/testthat/test-radCor.R | 146 - tests/testthat/test-rasterCVA.R | 58 tests/testthat/test-rasterPCA.R | 60 tests/testthat/test-readEE.R | 26 tests/testthat/test-readMeta.R | 24 tests/testthat/test-rescaleImage.R | 68 tests/testthat/test-rsOpts.R | 22 tests/testthat/test-sam.R | 70 tests/testthat/test-saveReadRSTBX.R | 34 tests/testthat/test-sli.R | 78 tests/testthat/test-spectralIndices.R | 161 - tests/testthat/test-stackMeta.R | 16 tests/testthat/test-superClass.R | 330 +-- tests/testthat/test-tasseledCap.R | 22 tests/testthat/test-topCor.R | 48 tests/testthat/test-unsuperClass.R | 152 - tests/testthat/test-validateMap.R | 74 tests/testthat/testdata/earthexplorer/EE_LANDSAT_5.txt | 202 - tests/testthat/testdata/earthexplorer/EE_LANDSAT_7.txt | 202 - tests/testthat/testdata/earthexplorer/EE_LANDSAT_8.txt | 168 - tests/testthat/testdata/earthexplorer/EE_LANDSAT_NEWFORMAT.csv | 6 tests/testthat/testdata/metadata/LC08_L1TP_193024_20180824_20200831_02_T1_MTL.txt | 568 ++--- tests/testthat/testdata/metadata/LC80980762015235LGN00.xml | 348 +-- tests/testthat/testdata/metadata/LE07_L1TP_160031_20110416_20161210_01_T1.xml | 452 ++-- tests/testthat/testdata/metadata/LE07_L1TP_160031_20110416_20161210_01_T1_MTL.TXT | 482 ++-- tests/testthat/testdata/metadata/LT05_L1TP_047027_20101006_20160512_01_T1_MTL.txt | 386 +-- tests/testthat/testdata/metadata/LT05_L1TP_218072_20100801_20161015_01_T1_MTL.txt | 388 +-- tests/testthat/testdata/metadata/mss_MTL.txt | 284 +- tests/testthat/testdata/sli/a.sli.hdr | 46 tests/testthat/testdata/sli/b.sli.hdr | 44 tests/testthat/testdata/sli/c.sli.hdr | 42 tests/testthat/testdata/sli/d.sli.hdr | 44 120 files changed, 10067 insertions(+), 9915 deletions(-)
Title: Create 'shiny' Applications for Cox Proportional Hazards Models
Description: Takes one or more fitted Cox proportional hazards models and writes
a 'shiny' application to a directory specified by the user. The 'shiny'
application displays predicted survival curves based on user input, and
contains none of the original data used to create the Cox model or models.
The goal is towards visualization and presentation of predicted survival
curves.
Author: Harrison Clement [aut, cre],
Subodh Selukar [aut],
Stanley Pounds [aut],
St Jude Children's Research Hospital [fnd]
Maintainer: Harrison Clement <harrisonclement16@gmail.com>
Diff between shinyCox versions 1.1.2 dated 2024-12-08 and 1.1.3 dated 2025-01-31
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- NEWS.md | 4 ++++ R/cox_predictions.R | 2 +- R/misc_functions.R | 2 +- R/shinybuilder.R | 2 +- 6 files changed, 15 insertions(+), 11 deletions(-)
Title: Compute and Plot Zonohedra from Vector Generators
Description: Computes a zonohedron from real vector generators. The package also computes zonogons (2D zonotopes) and zonosegs (1D zonotopes). An elementary S3 class for matroids is included, which supports matroids with rank 3, 2, and 1. Optimization methods are taken from Heckbert (1985) <https://www.cs.cmu.edu/~ph/zono.ps.gz>.
Author: Glenn Davis [aut, cre]
Maintainer: Glenn Davis <gdavis@gluonics.com>
Diff between zonohedra versions 0.3-0 dated 2024-07-09 and 0.4-0 dated 2025-01-31
DESCRIPTION | 8 MD5 | 48 - NEWS.md | 9 R/matroid.R | 58 + R/nearequal.R | 18 R/trans2.R | 34 - R/utils.R | 27 R/zonohedron.R | 178 ++++- R/zonoseg.R | 5 R/zonotope.R | 44 + build/vignette.rds |binary inst/doc/matroids.html | 360 ++++++++--- inst/doc/raytrace.R | 12 inst/doc/raytrace.Rmd | 12 inst/doc/raytrace.html | 300 +++++---- inst/doc/transitions.R | 4 inst/doc/transitions.Rmd | 24 inst/doc/transitions.html | 1285 +++++++++++++++++++++++++++++++----------- inst/doc/zonohedra-guide.html | 521 ++++++++++------- inst/doc/zonotopes.html | 686 +++++++++++++++------- man/boundarypgramdata.Rd | 63 +- man/inside.Rd | 13 src/matroid.c | 17 vignettes/raytrace.Rmd | 12 vignettes/transitions.Rmd | 24 25 files changed, 2643 insertions(+), 1119 deletions(-)
Title: Linear Model Evaluation with Randomized Residuals in a
Permutation Procedure
Description: Linear model calculations are made for many random versions of data.
Using residual randomization in a permutation procedure, sums of squares are
calculated over many permutations to generate empirical probability distributions
for evaluating model effects. This packaged is described by
Collyer & Adams (2018). Additionally, coefficients, statistics, fitted values, and residuals generated over many
permutations can be used for various procedures including pairwise tests, prediction, classification, and
model comparison. This package should provide most tools one could need for the analysis of
high-dimensional data, especially in ecology and evolutionary biology, but certainly other fields, as well.
Author: Michael Collyer [aut, cre] ,
Dean Adams [aut]
Maintainer: Michael Collyer <mlcollyer@gmail.com>
Diff between RRPP versions 2.0.4 dated 2024-11-13 and 2.1.0 dated 2025-01-31
DESCRIPTION | 6 MD5 | 53 ++++--- NAMESPACE | 19 ++ NEWS.md | 7 R/RRPP.support.code.r | 9 + R/RRPP.utils.r | 287 ++++++++++++++++++++++++++++++++++++++-- R/add.tree.r | 4 R/betaTest.r |only R/coef.lm.rrpp.r | 75 +++++++--- R/kcomp.r |only R/logLik.lm.rrpp.r | 7 R/model.comparison.r | 35 +++- R/pairwise.model.Z.r |only R/pairwise.r | 14 + build/vignette.rds |binary inst/doc/ANOVA.vs.MANOVA.html | 4 inst/doc/Using.RRPP.R | 2 inst/doc/Using.RRPP.html | 52 ++++--- man/betaTest.Rd |only man/coef.lm.rrpp.Rd | 29 +++- man/kcomp.Rd |only man/logLik.lm.rrpp.Rd | 13 + man/model.comparison.Rd | 13 + man/pairwise.Rd | 14 + man/pairwise.model.Z.Rd |only man/plot.kcomp.Rd |only man/print.betaTest.Rd |only man/print.kcomp.Rd |only man/print.pairwise.model.Z.Rd |only man/summary.betaTest.Rd |only man/summary.kcomp.Rd |only man/summary.pairwise.Rd | 16 +- man/summary.pairwise.model.Z.Rd |only tests/testthat/test-RRPP.R | 165 ++++++++++++++++++++++ 34 files changed, 717 insertions(+), 107 deletions(-)
Title: Tools for Assessing Clustering
Description: A set of tools for evaluating clustering robustness using
proportion of ambiguously clustered pairs (Senbabaoglu et al. (2014)
<doi:10.1038/srep06207>), as well as similarity across methods
and method stability using element-centric clustering comparison (Gates et
al. (2019) <doi:10.1038/s41598-019-44892-y>). Additionally, this package
enables stability-based parameter assessment for graph-based clustering
pipelines typical in single-cell data analysis.
Author: Andi Munteanu [aut, cre],
Arash Shahsavari [aut],
Rafael Kollyfas [ctb],
Miguel Larraz Lopez de Novales [aut],
Liviu Ciortuz [ctb],
Irina Mohorianu [aut]
Maintainer: Andi Munteanu <am3019@cam.ac.uk>
Diff between ClustAssess versions 0.3.0 dated 2022-01-26 and 1.0.0 dated 2025-01-31
ClustAssess-0.3.0/ClustAssess/R/utils-pipe.R |only ClustAssess-0.3.0/ClustAssess/build |only ClustAssess-0.3.0/ClustAssess/inst/doc |only ClustAssess-0.3.0/ClustAssess/man/figures |only ClustAssess-0.3.0/ClustAssess/man/get_clustering_difference.Rd |only ClustAssess-0.3.0/ClustAssess/man/get_feature_stability.Rd |only ClustAssess-0.3.0/ClustAssess/man/get_nn_importance.Rd |only ClustAssess-0.3.0/ClustAssess/man/get_resolution_importance.Rd |only ClustAssess-0.3.0/ClustAssess/man/pipe.Rd |only ClustAssess-0.3.0/ClustAssess/man/plot_clustering_difference_boxplot.Rd |only ClustAssess-0.3.0/ClustAssess/man/plot_feature_stability_boxplot.Rd |only ClustAssess-0.3.0/ClustAssess/man/plot_feature_stability_ecs_incremental.Rd |only ClustAssess-0.3.0/ClustAssess/vignettes |only ClustAssess-1.0.0/ClustAssess/DESCRIPTION | 54 ClustAssess-1.0.0/ClustAssess/MD5 | 138 ClustAssess-1.0.0/ClustAssess/NAMESPACE | 53 ClustAssess-1.0.0/ClustAssess/R/ECS.R | 2883 +++++---- ClustAssess-1.0.0/ClustAssess/R/PAC.R | 244 ClustAssess-1.0.0/ClustAssess/R/RcppExports.R | 38 ClustAssess-1.0.0/ClustAssess/R/convert.R |only ClustAssess-1.0.0/ClustAssess/R/generics.R |only ClustAssess-1.0.0/ClustAssess/R/marker-overlap.R | 192 ClustAssess-1.0.0/ClustAssess/R/shiny-app.R |only ClustAssess-1.0.0/ClustAssess/R/shiny-comparisons.R |only ClustAssess-1.0.0/ClustAssess/R/shiny-feature-stability.R |only ClustAssess-1.0.0/ClustAssess/R/shiny-graph-clustering.R |only ClustAssess-1.0.0/ClustAssess/R/shiny-graph-construction.R |only ClustAssess-1.0.0/ClustAssess/R/shiny-info.R |only ClustAssess-1.0.0/ClustAssess/R/shiny-landing-page.R |only ClustAssess-1.0.0/ClustAssess/R/shiny-sandbox.R |only ClustAssess-1.0.0/ClustAssess/R/shiny-utils.R |only ClustAssess-1.0.0/ClustAssess/R/stability-1-dim-reduction.R |only ClustAssess-1.0.0/ClustAssess/R/stability-2-graph-construction.R |only ClustAssess-1.0.0/ClustAssess/R/stability-3-graph-clustering.R |only ClustAssess-1.0.0/ClustAssess/R/stability-based-parameter-assessment.R | 3052 ++-------- ClustAssess-1.0.0/ClustAssess/R/utils.R |only ClustAssess-1.0.0/ClustAssess/README.md | 163 ClustAssess-1.0.0/ClustAssess/inst/CITATION |only ClustAssess-1.0.0/ClustAssess/man/add_metadata.Rd |only ClustAssess-1.0.0/ClustAssess/man/assess_clustering_stability.Rd |only ClustAssess-1.0.0/ClustAssess/man/assess_feature_stability.Rd |only ClustAssess-1.0.0/ClustAssess/man/assess_nn_stability.Rd |only ClustAssess-1.0.0/ClustAssess/man/automatic_stability_assessment.Rd |only ClustAssess-1.0.0/ClustAssess/man/calculate_markers.Rd |only ClustAssess-1.0.0/ClustAssess/man/calculate_markers_shiny.Rd |only ClustAssess-1.0.0/ClustAssess/man/choose_stable_clusters.Rd |only ClustAssess-1.0.0/ClustAssess/man/consensus_cluster.Rd | 4 ClustAssess-1.0.0/ClustAssess/man/create_clustering.Rd | 18 ClustAssess-1.0.0/ClustAssess/man/create_monocle_default.Rd |only ClustAssess-1.0.0/ClustAssess/man/create_monocle_from_clustassess.Rd |only ClustAssess-1.0.0/ClustAssess/man/create_monocle_from_clustassess_app.Rd |only ClustAssess-1.0.0/ClustAssess/man/create_seurat_object_default.Rd |only ClustAssess-1.0.0/ClustAssess/man/create_seurat_object_from_clustassess_app.Rd |only ClustAssess-1.0.0/ClustAssess/man/element_agreement.Rd | 14 ClustAssess-1.0.0/ClustAssess/man/element_consistency.Rd | 16 ClustAssess-1.0.0/ClustAssess/man/element_sim.Rd | 4 ClustAssess-1.0.0/ClustAssess/man/element_sim_elscore.Rd | 4 ClustAssess-1.0.0/ClustAssess/man/element_sim_matrix.Rd | 14 ClustAssess-1.0.0/ClustAssess/man/getNNmatrix.Rd |only ClustAssess-1.0.0/ClustAssess/man/get_clusters_from_clustassess_object.Rd |only ClustAssess-1.0.0/ClustAssess/man/get_highest_prune_param.Rd |only ClustAssess-1.0.0/ClustAssess/man/get_highest_prune_param_embedding.Rd |only ClustAssess-1.0.0/ClustAssess/man/get_nn_conn_comps.Rd | 76 ClustAssess-1.0.0/ClustAssess/man/marker_overlap.Rd | 62 ClustAssess-1.0.0/ClustAssess/man/merge_partitions.Rd | 38 ClustAssess-1.0.0/ClustAssess/man/merge_resolutions.Rd | 18 ClustAssess-1.0.0/ClustAssess/man/pac_convergence.Rd | 4 ClustAssess-1.0.0/ClustAssess/man/pac_landscape.Rd | 2 ClustAssess-1.0.0/ClustAssess/man/plot_clustering_difference_facet.Rd | 56 ClustAssess-1.0.0/ClustAssess/man/plot_clustering_overall_stability.Rd |only ClustAssess-1.0.0/ClustAssess/man/plot_clustering_per_value_stability.Rd |only ClustAssess-1.0.0/ClustAssess/man/plot_connected_comps_evolution.Rd | 38 ClustAssess-1.0.0/ClustAssess/man/plot_feature_overall_stability_boxplot.Rd |only ClustAssess-1.0.0/ClustAssess/man/plot_feature_overall_stability_incremental.Rd |only ClustAssess-1.0.0/ClustAssess/man/plot_feature_per_resolution_stability_boxplot.Rd |only ClustAssess-1.0.0/ClustAssess/man/plot_feature_per_resolution_stability_incremental.Rd |only ClustAssess-1.0.0/ClustAssess/man/plot_feature_stability_ecs_facet.Rd | 52 ClustAssess-1.0.0/ClustAssess/man/plot_feature_stability_mb_facet.Rd | 48 ClustAssess-1.0.0/ClustAssess/man/plot_k_n_partitions.Rd | 84 ClustAssess-1.0.0/ClustAssess/man/plot_k_resolution_corresp.Rd | 92 ClustAssess-1.0.0/ClustAssess/man/plot_n_neigh_ecs.Rd | 33 ClustAssess-1.0.0/ClustAssess/man/plot_n_neigh_k_correspondence.Rd | 32 ClustAssess-1.0.0/ClustAssess/man/server_comparisons.Rd |only ClustAssess-1.0.0/ClustAssess/man/server_dimensionality_reduction.Rd |only ClustAssess-1.0.0/ClustAssess/man/server_graph_clustering.Rd |only ClustAssess-1.0.0/ClustAssess/man/server_graph_construction.Rd |only ClustAssess-1.0.0/ClustAssess/man/server_landing_page.Rd |only ClustAssess-1.0.0/ClustAssess/man/server_sandbox.Rd |only ClustAssess-1.0.0/ClustAssess/man/ui_comparisons.Rd |only ClustAssess-1.0.0/ClustAssess/man/ui_dimensionality_reduction.Rd |only ClustAssess-1.0.0/ClustAssess/man/ui_graph_clustering.Rd |only ClustAssess-1.0.0/ClustAssess/man/ui_graph_construction.Rd |only 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Title: Tools for Accessing the Botanical Information and Ecology
Network Database
Description: Provides Tools for Accessing the Botanical Information and Ecology Network Database. The BIEN database contains cleaned and standardized botanical data including occurrence, trait, plot and taxonomic data (See <https://bien.nceas.ucsb.edu/bien/> for more Information). This package provides functions that query the BIEN database by constructing and executing optimized SQL queries.
Author: Brian Maitner [aut, cre]
Maintainer: Brian Maitner <bmaitner@gmail.com>
Diff between BIEN versions 1.2.6 dated 2023-01-06 and 1.2.7 dated 2025-01-31
DESCRIPTION | 14 MD5 | 87 - NAMESPACE | 4 NEWS | 20 R/BIEN.R | 249 ++- R/BIEN_info.R | 3 R/BIEN_sql.R | 117 + README.md | 4 build/vignette.rds |binary inst/doc/BIEN.Rmd | 37 inst/doc/BIEN.html | 252 ++- inst/doc/BIEN_tutorial.R | 256 +-- inst/doc/BIEN_tutorial.Rmd | 20 inst/doc/BIEN_tutorial.html | 1376 ++++++++++++-------- man/BIEN.Rd | 4 man/BIEN_metadata_citation.Rd | 1 man/BIEN_metadata_data_dictionaries.Rd |only man/BIEN_metadata_database_version.Rd | 1 man/BIEN_metadata_list_political_names.Rd | 1 man/BIEN_metadata_match_data.Rd | 1 man/BIEN_occurrence_country.Rd | 3 man/BIEN_occurrence_family.Rd | 3 man/BIEN_plot_metadata.Rd | 1 man/BIEN_ranges_box.Rd | 4 man/BIEN_ranges_genus.Rd | 4 man/BIEN_ranges_intersect_species.Rd | 4 man/BIEN_ranges_list.Rd | 5 man/BIEN_ranges_load_species.Rd | 4 man/BIEN_ranges_sf.Rd | 4 man/BIEN_ranges_shapefile_to_skinny.Rd | 4 man/BIEN_ranges_skinny_ranges_to_richness_raster.Rd | 4 man/BIEN_trait_country.Rd | 4 man/BIEN_trait_family.Rd | 4 man/BIEN_trait_genus.Rd | 4 man/BIEN_trait_list.Rd | 4 man/BIEN_trait_mean.Rd | 4 man/BIEN_trait_species.Rd | 4 man/BIEN_trait_traitbyfamily.Rd | 4 man/BIEN_trait_traitbygenus.Rd | 4 man/BIEN_trait_traitbyspecies.Rd | 4 man/BIEN_trait_traits_per_species.Rd | 4 man/dot-BIEN_sql.Rd | 5 tests/testthat/test-BIEN.r | 6 vignettes/BIEN.Rmd | 37 vignettes/BIEN_tutorial.Rmd | 20 45 files changed, 1605 insertions(+), 990 deletions(-)
Title: A Tidy Framework for Changepoint Detection Analysis
Description: Changepoint detection algorithms for R are widespread but have
different interfaces and reporting conventions.
This makes the comparative analysis of results difficult.
We solve this problem by providing a tidy, unified interface for several
different changepoint detection algorithms.
We also provide consistent numerical and graphical reporting leveraging
the 'broom' and 'ggplot2' packages.
Author: Benjamin S. Baumer [aut, cre, cph]
,
Biviana Marcela Suarez Sierra [aut]
,
Arrigo Coen [aut] ,
Carlos A. Taimal [aut] ,
Xueheng Shi [ctb]
Maintainer: Benjamin S. Baumer <ben.baumer@gmail.com>
Diff between tidychangepoint versions 0.0.1 dated 2024-08-19 and 1.0.0 dated 2025-01-31
tidychangepoint-0.0.1/tidychangepoint/data/mlb_hrs.rda |only tidychangepoint-0.0.1/tidychangepoint/man/cut_inclusive.Rd |only tidychangepoint-0.0.1/tidychangepoint/man/mlb_hrs.Rd |only tidychangepoint-1.0.0/tidychangepoint/DESCRIPTION | 19 - tidychangepoint-1.0.0/tidychangepoint/MD5 | 68 +++--- tidychangepoint-1.0.0/tidychangepoint/NAMESPACE | 16 + tidychangepoint-1.0.0/tidychangepoint/NEWS.md | 12 + tidychangepoint-1.0.0/tidychangepoint/R/aaa_generics.R | 38 +++ tidychangepoint-1.0.0/tidychangepoint/R/class-fun_cpt.R | 15 + tidychangepoint-1.0.0/tidychangepoint/R/class-mod_cpt.R | 18 + tidychangepoint-1.0.0/tidychangepoint/R/class-tidycpt.R | 6 tidychangepoint-1.0.0/tidychangepoint/R/data.R | 24 +- tidychangepoint-1.0.0/tidychangepoint/R/mod_nhpp.R | 4 tidychangepoint-1.0.0/tidychangepoint/R/pkg-stats.R | 19 + tidychangepoint-1.0.0/tidychangepoint/R/segment.R | 4 tidychangepoint-1.0.0/tidychangepoint/R/tidychangepoint-package.R | 107 ++++++++++ tidychangepoint-1.0.0/tidychangepoint/R/utils.R | 30 ++ tidychangepoint-1.0.0/tidychangepoint/README.md | 99 ++++++++- tidychangepoint-1.0.0/tidychangepoint/build/partial.rdb |binary tidychangepoint-1.0.0/tidychangepoint/build/vignette.rds |binary tidychangepoint-1.0.0/tidychangepoint/data/CET.rda |binary tidychangepoint-1.0.0/tidychangepoint/data/italy_grads.rda |only tidychangepoint-1.0.0/tidychangepoint/data/mlb_diffs.rda |only tidychangepoint-1.0.0/tidychangepoint/inst/doc/tidychangepoint.html | 38 +-- tidychangepoint-1.0.0/tidychangepoint/man/BMDL.Rd | 4 tidychangepoint-1.0.0/tidychangepoint/man/CET.Rd | 5 tidychangepoint-1.0.0/tidychangepoint/man/HQC.Rd |only tidychangepoint-1.0.0/tidychangepoint/man/MBIC.Rd | 4 tidychangepoint-1.0.0/tidychangepoint/man/MDL.Rd | 6 tidychangepoint-1.0.0/tidychangepoint/man/SIC.Rd |only tidychangepoint-1.0.0/tidychangepoint/man/cut_by_tau.Rd |only tidychangepoint-1.0.0/tidychangepoint/man/italy_grads.Rd |only tidychangepoint-1.0.0/tidychangepoint/man/ls_pkgs.Rd |only tidychangepoint-1.0.0/tidychangepoint/man/mlb_diffs.Rd |only tidychangepoint-1.0.0/tidychangepoint/man/pad_tau.Rd | 9 tidychangepoint-1.0.0/tidychangepoint/man/reexports.Rd | 2 tidychangepoint-1.0.0/tidychangepoint/man/regions.Rd |only tidychangepoint-1.0.0/tidychangepoint/man/segment.Rd | 4 tidychangepoint-1.0.0/tidychangepoint/man/tidychangepoint-package.Rd | 2 tidychangepoint-1.0.0/tidychangepoint/tests/testthat/test-stats.R | 24 +- tidychangepoint-1.0.0/tidychangepoint/tests/testthat/test-tidycpt.R | 16 + 41 files changed, 475 insertions(+), 118 deletions(-)
More information about tidychangepoint at CRAN
Permanent link
Title: Prediction Intervals for Synthetic Control Methods with Multiple
Treated Units and Staggered Adoption
Description: Implementation of prediction and inference procedures for Synthetic Control methods using least square, lasso, ridge, or simplex-type constraints. Uncertainty is quantified with prediction intervals as developed in Cattaneo, Feng, and Titiunik (2021) <https://nppackages.github.io/references/Cattaneo-Feng-Titiunik_2021_JASA.pdf> for a single treated unit and in Cattaneo, Feng, Palomba, and Titiunik (2023) <doi:10.48550/arXiv.2210.05026> for multiple treated units and staggered adoption. More details about the software implementation can be found in Cattaneo, Feng, Palomba, and Titiunik (2024) <doi:10.48550/arXiv.2202.05984>.
Author: Matias Cattaneo [aut],
Yingjie Feng [aut],
Filippo Palomba [aut, cre],
Rocio Titiunik [aut]
Maintainer: Filippo Palomba <fpalomba@princeton.edu>
Diff between scpi versions 2.2.6 dated 2024-11-11 and 3.0.0 dated 2025-01-31
DESCRIPTION | 6 - MD5 | 8 - R/scpi.R | 176 +++++++++++++++++-------------------- R/supporting_functions.R | 218 +++++++++++++++-------------------------------- man/scpi.Rd | 24 +---- 5 files changed, 167 insertions(+), 265 deletions(-)
Title: Generate Samples with a Variety of Probability Distributions
Description: Simplifies the process of generating samples from a variety of probability distributions, allowing users to quickly create data frames for demonstrations, troubleshooting, or teaching purposes. Data is available in multiple sizes—small, medium, and large. For more information, refer to the package documentation.
Author: Nicholas Vietto [aut, cre, cph]
Maintainer: Nicholas Vietto <nicholasvietto@gmail.com>
Diff between samplezoo versions 1.1.1 dated 2024-12-02 and 1.2.0 dated 2025-01-31
DESCRIPTION | 6 - MD5 | 15 ++-- NEWS.md | 12 +++ R/distributions.R | 35 +++++---- R/samplezoo.R | 9 +- README.md | 54 ++++++-------- inst/doc/Example.html | 140 +++++++++++++++++++------------------- man/figures/README-pressure-1.png |only man/samplezoo.Rd | 9 +- 9 files changed, 145 insertions(+), 135 deletions(-)
Title: Deal with Dependencies
Description: Manage dependencies during package development. This can
retrieve all dependencies that are used in ".R" files in the "R/"
directory, in ".Rmd" files in "vignettes/" directory and in 'roxygen2'
documentation of functions. There is a function to update the
"DESCRIPTION" file of your package with 'CRAN' packages or any other
remote package. All functions to retrieve dependencies of ".R"
scripts and ".Rmd" or ".qmd" files can be used independently of a
package development.
Author: Vincent Guyader [cre, aut] ,
Sebastien Rochette [aut] ,
Murielle Delmotte [aut] ,
Swann Floc'hlay [aut] ,
ThinkR [cph, fnd]
Maintainer: Vincent Guyader <vincent@thinkr.fr>
Diff between attachment versions 0.4.2 dated 2024-07-01 and 0.4.3 dated 2025-01-31
attachment-0.4.2/attachment/tests/testdown |only attachment-0.4.3/attachment/DESCRIPTION | 24 attachment-0.4.3/attachment/MD5 | 136 - attachment-0.4.3/attachment/NAMESPACE | 5 attachment-0.4.3/attachment/NEWS.md | 20 attachment-0.4.3/attachment/R/add_from_examples.R |only attachment-0.4.3/attachment/R/att_from_data.R |only attachment-0.4.3/attachment/R/att_from_rmds.R | 14 attachment-0.4.3/attachment/R/att_from_rscripts.R | 14 attachment-0.4.3/attachment/R/att_to_description.R | 12 attachment-0.4.3/attachment/R/create_dependencies_file.R | 6 attachment-0.4.3/attachment/R/create_renv.R | 13 attachment-0.4.3/attachment/R/set_remotes.R | 62 attachment-0.4.3/attachment/README.md | 512 ++-- attachment-0.4.3/attachment/build/vignette.rds |binary attachment-0.4.3/attachment/inst/doc/a-fill-pkg-description.R | 191 - attachment-0.4.3/attachment/inst/doc/a-fill-pkg-description.Rmd | 3 attachment-0.4.3/attachment/inst/doc/a-fill-pkg-description.html | 1172 ++++------ attachment-0.4.3/attachment/inst/doc/b-bookdown-and-scripts.R | 99 attachment-0.4.3/attachment/inst/doc/b-bookdown-and-scripts.Rmd | 6 attachment-0.4.3/attachment/inst/doc/b-bookdown-and-scripts.html | 952 ++++---- attachment-0.4.3/attachment/inst/doc/create-dependencies-file.R | 68 attachment-0.4.3/attachment/inst/doc/create-dependencies-file.Rmd | 13 attachment-0.4.3/attachment/inst/doc/create-dependencies-file.html | 826 +++---- attachment-0.4.3/attachment/inst/doc/use_renv.R | 40 attachment-0.4.3/attachment/inst/doc/use_renv.html | 784 +++--- attachment-0.4.3/attachment/inst/dummypackage/DESCRIPTION | 18 attachment-0.4.3/attachment/inst/dummypackage/R/my_mean.R | 4 attachment-0.4.3/attachment/inst/dummypackage/man/my_mean.Rd | 5 attachment-0.4.3/attachment/man/att_amend_desc.Rd | 2 attachment-0.4.3/attachment/man/att_from_data.Rd |only attachment-0.4.3/attachment/man/att_from_examples.Rd |only attachment-0.4.3/attachment/man/att_from_rmds.Rd | 8 attachment-0.4.3/attachment/man/att_from_rscripts.Rd | 9 attachment-0.4.3/attachment/man/attachment-package.Rd | 4 attachment-0.4.3/attachment/man/complete_remote_branch.Rd |only attachment-0.4.3/attachment/man/create_renv_for_dev.Rd | 5 attachment-0.4.3/attachment/man/find_remotes.Rd | 4 attachment-0.4.3/attachment/man/set_remotes_to_desc.Rd | 4 attachment-0.4.3/attachment/tests/testthat/blank.lock |only attachment-0.4.3/attachment/tests/testthat/f1Rmd | 174 - attachment-0.4.3/attachment/tests/testthat/f2R | 96 attachment-0.4.3/attachment/tests/testthat/f3.R |only attachment-0.4.3/attachment/tests/testthat/f4.R |only attachment-0.4.3/attachment/tests/testthat/f5.R |only attachment-0.4.3/attachment/tests/testthat/fake_namespace | 12 attachment-0.4.3/attachment/tests/testthat/for_golem.lock |only attachment-0.4.3/attachment/tests/testthat/test-amend-description.R | 110 attachment-0.4.3/attachment/tests/testthat/test-att_from_data.R |only attachment-0.4.3/attachment/tests/testthat/test-att_from_examples.R |only attachment-0.4.3/attachment/tests/testthat/test-create_dependencies_file.R | 6 attachment-0.4.3/attachment/tests/testthat/test-rmd.R | 46 attachment-0.4.3/attachment/tests/testthat/test-rscript.R | 27 attachment-0.4.3/attachment/tests/testthat/test-set-remotes.R | 40 attachment-0.4.3/attachment/vignettes/a-fill-pkg-description.Rmd | 3 attachment-0.4.3/attachment/vignettes/b-bookdown-and-scripts.Rmd | 6 attachment-0.4.3/attachment/vignettes/create-dependencies-file.Rmd | 13 57 files changed, 2948 insertions(+), 2620 deletions(-)
Title: 'IUCN' Red List Client
Description: 'IUCN' Red List (<https://api.iucnredlist.org/>) client.
The 'IUCN' Red List is a global list of threatened and endangered species.
Functions cover all of the Red List 'API' routes. An 'API' key is required.
Author: William Gearty [aut, cre],
Scott Chamberlain [aut],
rOpenSci [fnd] ,
Maelle Salmon [ctb],
Kevin Cazelles [rev] ,
Stephanie Hazlitt [rev]
Maintainer: William Gearty <willgearty@gmail.com>
Diff between rredlist versions 0.7.1 dated 2022-11-11 and 1.0.0 dated 2025-01-31
rredlist-0.7.1/rredlist/R/rl_common_names.R |only rredlist-0.7.1/rredlist/R/rl_history.R |only rredlist-0.7.1/rredlist/R/rl_measures.R |only rredlist-0.7.1/rredlist/R/rl_narrative.R |only rredlist-0.7.1/rredlist/R/rl_occ_country.R |only rredlist-0.7.1/rredlist/R/rl_regions.R |only rredlist-0.7.1/rredlist/R/rl_search.R |only rredlist-0.7.1/rredlist/R/rl_sp.R |only rredlist-0.7.1/rredlist/R/rl_sp_category.R |only rredlist-0.7.1/rredlist/R/rl_sp_citation.R |only rredlist-0.7.1/rredlist/R/rl_sp_country.R |only rredlist-0.7.1/rredlist/R/rl_synonyms.R |only rredlist-0.7.1/rredlist/tests/fixtures/rl_common_names-badkey.yml |only rredlist-0.7.1/rredlist/tests/fixtures/rl_common_names-no-results.yml |only rredlist-0.7.1/rredlist/tests/fixtures/rl_common_names-not-parsing.yml |only rredlist-0.7.1/rredlist/tests/fixtures/rl_common_names.yml |only rredlist-0.7.1/rredlist/tests/fixtures/rl_common_names_-badkey.yml |only rredlist-0.7.1/rredlist/tests/fixtures/rl_common_names_.yml |only rredlist-0.7.1/rredlist/tests/fixtures/rl_growth_forms-no-results.yml |only rredlist-0.7.1/rredlist/tests/fixtures/rl_habitats-not-found.yml |only rredlist-0.7.1/rredlist/tests/fixtures/rl_habitats_-region-not-found.yml |only rredlist-0.7.1/rredlist/tests/fixtures/rl_history-by-id.yml |only rredlist-0.7.1/rredlist/tests/fixtures/rl_history-not-parsing.yml |only rredlist-0.7.1/rredlist/tests/fixtures/rl_history-region-together.yml |only rredlist-0.7.1/rredlist/tests/fixtures/rl_history.yml |only rredlist-0.7.1/rredlist/tests/fixtures/rl_history_.yml |only rredlist-0.7.1/rredlist/tests/fixtures/rl_measures-no-results.yml |only rredlist-0.7.1/rredlist/tests/fixtures/rl_measures-not-parsing.yml |only rredlist-0.7.1/rredlist/tests/fixtures/rl_measures.yml |only rredlist-0.7.1/rredlist/tests/fixtures/rl_measures_-region-not-found.yml |only rredlist-0.7.1/rredlist/tests/fixtures/rl_measures_.yml |only rredlist-0.7.1/rredlist/tests/fixtures/rl_narrative-no-results.yml |only 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rredlist-1.0.0/rredlist/tests/fixtures/rl_threats-def.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_threats-not-parsing.yml | 187 +++- rredlist-1.0.0/rredlist/tests/fixtures/rl_threats.yml | 187 +++- rredlist-1.0.0/rredlist/tests/fixtures/rl_threats_-def.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_threats_.yml | 69 - rredlist-1.0.0/rredlist/tests/fixtures/rl_threats_no_args.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_threats_with_args.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_use_and_trade-def-not-parsing.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_use_and_trade-def.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_use_and_trade-not-parsing.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_use_and_trade.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_use_and_trade_-def.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_use_and_trade_.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_version.yml | 27 rredlist-1.0.0/rredlist/tests/fixtures/rr_GET.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rr_GET_raw.yml |only rredlist-1.0.0/rredlist/tests/spelling.R |only rredlist-1.0.0/rredlist/tests/testthat/_snaps |only rredlist-1.0.0/rredlist/tests/testthat/helper-rredlist.R | 12 rredlist-1.0.0/rredlist/tests/testthat/helper-vdiffr.R |only rredlist-1.0.0/rredlist/tests/testthat/test-defunct.R |only rredlist-1.0.0/rredlist/tests/testthat/test-fail-well.R | 73 + rredlist-1.0.0/rredlist/tests/testthat/test-rl_actions.R |only rredlist-1.0.0/rredlist/tests/testthat/test-rl_assessment.R |only rredlist-1.0.0/rredlist/tests/testthat/test-rl_categories.R |only rredlist-1.0.0/rredlist/tests/testthat/test-rl_citation.R | 7 rredlist-1.0.0/rredlist/tests/testthat/test-rl_comp_groups.R |only rredlist-1.0.0/rredlist/tests/testthat/test-rl_countries.R | 70 + rredlist-1.0.0/rredlist/tests/testthat/test-rl_extinct.R |only rredlist-1.0.0/rredlist/tests/testthat/test-rl_extinct_wild.R |only rredlist-1.0.0/rredlist/tests/testthat/test-rl_faos.R |only rredlist-1.0.0/rredlist/tests/testthat/test-rl_green.R |only rredlist-1.0.0/rredlist/tests/testthat/test-rl_growth_forms.R | 99 +- rredlist-1.0.0/rredlist/tests/testthat/test-rl_habitats.R |only rredlist-1.0.0/rredlist/tests/testthat/test-rl_key.R | 7 rredlist-1.0.0/rredlist/tests/testthat/test-rl_latest.R |only rredlist-1.0.0/rredlist/tests/testthat/test-rl_realms.R |only rredlist-1.0.0/rredlist/tests/testthat/test-rl_research.R |only rredlist-1.0.0/rredlist/tests/testthat/test-rl_scopes.R |only rredlist-1.0.0/rredlist/tests/testthat/test-rl_sis.R |only rredlist-1.0.0/rredlist/tests/testthat/test-rl_sp_count.R |only rredlist-1.0.0/rredlist/tests/testthat/test-rl_species.R |only rredlist-1.0.0/rredlist/tests/testthat/test-rl_stresses.R |only rredlist-1.0.0/rredlist/tests/testthat/test-rl_systems.R |only rredlist-1.0.0/rredlist/tests/testthat/test-rl_taxa.R |only rredlist-1.0.0/rredlist/tests/testthat/test-rl_threats.R | 105 +- rredlist-1.0.0/rredlist/tests/testthat/test-rl_trends.R |only rredlist-1.0.0/rredlist/tests/testthat/test-rl_use_and_trade.R |only rredlist-1.0.0/rredlist/tests/testthat/test-rl_version.R | 13 rredlist-1.0.0/rredlist/tests/testthat/test-zzz.R |only rredlist-1.0.0/rredlist/vignettes |only 325 files changed, 3024 insertions(+), 1747 deletions(-)
Title: 'shiny' Widgets for 'teal' Applications
Description: Collection of 'shiny' widgets to support 'teal' applications.
Enables the manipulation of application layout and plot or table
settings.
Author: Dawid Kaledkowski [aut, cre],
Pawel Rucki [aut],
Mahmoud Hallal [aut],
Nikolas Burkoff [aut],
Maciej Nasinski [aut],
Konrad Pagacz [aut],
Junlue Zhao [aut],
F. Hoffmann-La Roche AG [cph, fnd]
Maintainer: Dawid Kaledkowski <dawid.kaledkowski@roche.com>
Diff between teal.widgets versions 0.4.2 dated 2023-12-14 and 0.4.3 dated 2025-01-31
teal.widgets-0.4.2/teal.widgets/R/include_css_js.R |only teal.widgets-0.4.2/teal.widgets/inst/css |only teal.widgets-0.4.2/teal.widgets/inst/js |only teal.widgets-0.4.2/teal.widgets/inst/widgets |only teal.widgets-0.4.2/teal.widgets/man/include_css_files.Rd |only teal.widgets-0.4.2/teal.widgets/tests/testthat/Rplots.pdf |only teal.widgets-0.4.2/teal.widgets/tests/testthat/_snaps |only teal.widgets-0.4.2/teal.widgets/tests/testthat/helpers-with-settings.R |only teal.widgets-0.4.2/teal.widgets/tests/testthat/setup-skip_if_too_deep.R |only teal.widgets-0.4.3/teal.widgets/DESCRIPTION | 22 teal.widgets-0.4.3/teal.widgets/MD5 | 137 +- teal.widgets-0.4.3/teal.widgets/NEWS.md | 7 teal.widgets-0.4.3/teal.widgets/R/draggable_buckets.R | 55 - teal.widgets-0.4.3/teal.widgets/R/get_dt_rows.R | 17 teal.widgets-0.4.3/teal.widgets/R/ggplot2_args.R | 10 teal.widgets-0.4.3/teal.widgets/R/nested_closeable_modal.R | 36 teal.widgets-0.4.3/teal.widgets/R/optionalInput.R | 200 +-- teal.widgets-0.4.3/teal.widgets/R/panel_group.R | 86 + teal.widgets-0.4.3/teal.widgets/R/plot_with_settings.R | 365 +++---- teal.widgets-0.4.3/teal.widgets/R/standard_layout.R | 59 - teal.widgets-0.4.3/teal.widgets/R/table_with_settings.R | 72 - teal.widgets-0.4.3/teal.widgets/R/utils.R | 2 teal.widgets-0.4.3/teal.widgets/R/verbatim_popup.R | 28 teal.widgets-0.4.3/teal.widgets/R/white_small_well.R | 9 teal.widgets-0.4.3/teal.widgets/README.md | 9 teal.widgets-0.4.3/teal.widgets/build/vignette.rds |binary teal.widgets-0.4.3/teal.widgets/inst/doc/custom-basic-table-arguments.R | 72 - teal.widgets-0.4.3/teal.widgets/inst/doc/custom-basic-table-arguments.Rmd | 85 - teal.widgets-0.4.3/teal.widgets/inst/doc/custom-basic-table-arguments.html | 117 +- teal.widgets-0.4.3/teal.widgets/inst/doc/custom-ggplot2-arguments.R | 68 - teal.widgets-0.4.3/teal.widgets/inst/doc/custom-ggplot2-arguments.Rmd | 93 - teal.widgets-0.4.3/teal.widgets/inst/doc/custom-ggplot2-arguments.html | 117 +- teal.widgets-0.4.3/teal.widgets/inst/draggable-buckets |only teal.widgets-0.4.3/teal.widgets/inst/optional-select-input |only teal.widgets-0.4.3/teal.widgets/inst/panel-item |only teal.widgets-0.4.3/teal.widgets/inst/plot-with-settings |only teal.widgets-0.4.3/teal.widgets/inst/table-with-settings |only teal.widgets-0.4.3/teal.widgets/inst/verbatim-popup |only teal.widgets-0.4.3/teal.widgets/man/clean_brushedPoints.Rd | 34 teal.widgets-0.4.3/teal.widgets/man/draggable_buckets.Rd | 27 teal.widgets-0.4.3/teal.widgets/man/extract_choices_labels.Rd | 2 teal.widgets-0.4.3/teal.widgets/man/get_dt_rows.Rd | 13 teal.widgets-0.4.3/teal.widgets/man/ggplot2_args.Rd | 2 teal.widgets-0.4.3/teal.widgets/man/nested_closeable_modal.Rd | 34 teal.widgets-0.4.3/teal.widgets/man/optionalSelectInput.Rd | 174 +-- teal.widgets-0.4.3/teal.widgets/man/optionalSliderInput.Rd | 6 teal.widgets-0.4.3/teal.widgets/man/optionalSliderInputValMinMax.Rd | 4 teal.widgets-0.4.3/teal.widgets/man/panel_group.Rd | 41 teal.widgets-0.4.3/teal.widgets/man/panel_item.Rd | 30 teal.widgets-0.4.3/teal.widgets/man/parse_ggplot2_args.Rd | 4 teal.widgets-0.4.3/teal.widgets/man/plot_suppress.Rd | 4 teal.widgets-0.4.3/teal.widgets/man/plot_with_settings.Rd | 251 ++-- teal.widgets-0.4.3/teal.widgets/man/resolve_ggplot2_args.Rd | 4 teal.widgets-0.4.3/teal.widgets/man/standard_layout.Rd | 38 teal.widgets-0.4.3/teal.widgets/man/table_with_settings.Rd | 46 teal.widgets-0.4.3/teal.widgets/man/verbatim_popup.Rd | 6 teal.widgets-0.4.3/teal.widgets/man/white_small_well.Rd | 5 teal.widgets-0.4.3/teal.widgets/tests/testthat/helpers-testing-depth.R |only teal.widgets-0.4.3/teal.widgets/tests/testthat/helpers-utils.R |only teal.widgets-0.4.3/teal.widgets/tests/testthat/setup-options.R |only teal.widgets-0.4.3/teal.widgets/tests/testthat/test-ggplot2_args.R | 23 teal.widgets-0.4.3/teal.widgets/tests/testthat/test-optionalInput.R | 10 teal.widgets-0.4.3/teal.widgets/tests/testthat/test-plot_with_settings.R | 41 teal.widgets-0.4.3/teal.widgets/tests/testthat/test-plot_with_settings_ui.R | 514 +++++++++- teal.widgets-0.4.3/teal.widgets/tests/testthat/test-standard_layout.R | 2 teal.widgets-0.4.3/teal.widgets/tests/testthat/test-table_args.R | 4 teal.widgets-0.4.3/teal.widgets/tests/testthat/test-table_with_settings.R | 25 teal.widgets-0.4.3/teal.widgets/tests/testthat/test-table_with_settings_ui.R | 394 +++++++ teal.widgets-0.4.3/teal.widgets/tests/testthat/test-utils.R | 16 teal.widgets-0.4.3/teal.widgets/tests/testthat/test-verbatim_popup_ui.R |only teal.widgets-0.4.3/teal.widgets/vignettes/custom-basic-table-arguments.Rmd | 85 - teal.widgets-0.4.3/teal.widgets/vignettes/custom-ggplot2-arguments.Rmd | 93 - 72 files changed, 2358 insertions(+), 1240 deletions(-)
Title: Robustness Checks for Omitted Variable Bias
Description: Robustness checks for omitted variable bias. The package includes robustness checks proposed by Oster (2019). The 'robomit' package computes i) the bias-adjusted treatment correlation or effect and ii) the degree of selection on unobservables relative to observables (with respect to the treatment variable) that would be necessary to eliminate the result based on the framework by Oster (2019). The code is based on the 'psacalc' command in 'Stata'. Additionally, 'robomit' offers a set of sensitivity analysis and visualization functions. See Oster, E. 2019. <doi:10.1080/07350015.2016.1227711>. Additionally, see Diegert, P., Masten, M. A., & Poirier, A. (2022) for a recent discussion of the topic: <doi:10.48550/arXiv.2206.02303>.
Author: Sergei Schaub [aut, cre] ,
ETH Zurich [cph]
Maintainer: Sergei Schaub <sergei.schaub@agroscope.admin.ch>
Diff between robomit versions 1.0.6 dated 2021-06-22 and 1.0.7 dated 2025-01-31
DESCRIPTION | 16 MD5 | 28 R/robomit_functions.R | 3220 +++++++++++++++++++++++------------------------- man/o_beta.Rd | 6 man/o_beta_boot.Rd | 4 man/o_beta_boot_inf.Rd | 4 man/o_beta_boot_viz.Rd | 4 man/o_beta_rsq.Rd | 4 man/o_beta_rsq_viz.Rd | 4 man/o_delta.Rd | 6 man/o_delta_boot.Rd | 4 man/o_delta_boot_inf.Rd | 4 man/o_delta_boot_viz.Rd | 4 man/o_delta_rsq.Rd | 4 man/o_delta_rsq_viz.Rd | 4 15 files changed, 1618 insertions(+), 1698 deletions(-)
Title: Generalized Dissimilarity Modeling
Description: A toolkit with functions to fit, plot, summarize, and apply Generalized Dissimilarity Models. Mokany K, Ware C, Woolley SNC, Ferrier S, Fitzpatrick MC (2022) <doi:10.1111/geb.13459> Ferrier S, Manion G, Elith J, Richardson K (2007) <doi:10.1111/j.1472-4642.2007.00341.x>.
Author: Matt Fitzpatrick [aut, cre] ,
Karel Mokany [aut] ,
Glenn Manion [aut],
Diego Nieto-Lugilde [aut] ,
Simon Ferrier [aut] ,
Roozbeh Valavi [ctb],
Matthew Lisk [ctb],
Chris Ware [ctb],
Skip Woolley [ctb],
Tom Harwood [ctb]
Maintainer: Matt Fitzpatrick <mfitzpatrick@umces.edu>
Diff between gdm versions 1.6.0-5 dated 2025-01-10 and 1.6.0-6 dated 2025-01-31
DESCRIPTION | 8 +++---- MD5 | 6 ++--- NEWS.md | 3 ++ inst/tinytest/test_gdm.R | 48 +++++++++++++++++++++++------------------------ 4 files changed, 34 insertions(+), 31 deletions(-)
Title: Dynamic Function-Oriented 'Make'-Like Declarative Pipelines
Description: Pipeline tools coordinate the pieces of computationally
demanding analysis projects.
The 'targets' package is a 'Make'-like pipeline tool for statistics and
data science in R. The package skips costly runtime for tasks
that are already up to date,
orchestrates the necessary computation with implicit parallel computing,
and abstracts files as R objects. If all the current output matches
the current upstream code and data, then the whole pipeline is up
to date, and the results are more trustworthy than otherwise.
The methodology in this package
borrows from GNU 'Make' (2015, ISBN:978-9881443519)
and 'drake' (2018, <doi:10.21105/joss.00550>).
Author: William Michael Landau [aut, cre]
,
Matthew T. Warkentin [ctb],
Mark Edmondson [ctb] ,
Samantha Oliver [rev] ,
Tristan Mahr [rev] ,
Eli Lilly and Company [cph, fnd]
Maintainer: William Michael Landau <will.landau.oss@gmail.com>
Diff between targets versions 1.10.0 dated 2025-01-13 and 1.10.1 dated 2025-01-31
DESCRIPTION | 6 ++-- MD5 | 48 +++++++++++++++++--------------- NEWS.md | 6 ++++ R/class_active.R | 50 +++++++++++++++++----------------- R/class_aws.R | 3 ++ R/class_crew.R | 16 ++++++++-- R/class_database.R | 13 ++++---- R/class_gcp.R | 3 ++ R/class_graph.R | 13 +++++--- R/class_meta.R | 15 +++++----- R/class_outdated.R | 2 - R/class_progress.R | 3 +- R/class_reporter.R | 6 +++- R/class_sequential.R | 6 ++-- R/class_summary.R | 3 ++ R/class_timestamp.R | 10 ++++++ R/class_verbose.R | 9 ++++++ R/tar_crew.R | 9 +++--- R/utils_cli.R | 13 ++++++++ man/tar_crew.Rd | 9 +++--- tests/interactive/test-crew_retries.R |only tests/testthat/test-class_reporter.R |only tests/testthat/test-class_summary.R | 12 ++++++++ tests/testthat/test-class_timestamp.R | 13 ++++++++ tests/testthat/test-class_verbose.R | 13 ++++++++ tests/testthat/test-utils_cli.R | 11 +++++++ 26 files changed, 208 insertions(+), 84 deletions(-)
Title: Archetypes for Targets
Description: Function-oriented Make-like declarative pipelines for
Statistics and data science are supported in the 'targets' R package.
As an extension to 'targets', the 'tarchetypes' package provides
convenient user-side functions to make 'targets' easier to use.
By establishing reusable archetypes for common kinds of
targets and pipelines, these functions help express complicated
reproducible pipelines concisely and compactly.
The methods in this package were influenced by the 'targets' R package.
by Will Landau (2018) <doi:10.21105/joss.00550>.
Author: William Michael Landau [aut, cre]
,
Rudolf Siegel [ctb] ,
Samantha Oliver [rev] ,
Tristan Mahr [rev] ,
Eli Lilly and Company [cph, fnd]
Maintainer: William Michael Landau <will.landau.oss@gmail.com>
Diff between tarchetypes versions 0.11.0 dated 2024-11-15 and 0.12.0 dated 2025-01-31
DESCRIPTION | 6 - MD5 | 97 ++++++++++++++++--------------- NAMESPACE | 1 NEWS.md | 9 ++ R/class_step.R |only R/tar_combine.R | 8 +- R/tar_files.R | 25 +++++-- R/tar_map2_raw.R | 6 + R/tar_map_rep.R | 10 ++- R/tar_map_rep_raw.R | 69 ++++++++++++++++++---- R/tar_quarto.R | 4 - R/tar_quarto_files.R | 32 ++++++---- R/tar_quarto_raw.R | 13 +--- R/tar_rep2_raw.R | 6 + R/tar_rep_index.R |only R/tar_rep_raw.R | 6 + man/tar_age.Rd | 2 man/tar_change.Rd | 12 +++ man/tar_combine.Rd | 10 +-- man/tar_download.Rd | 12 +++ man/tar_file_read.Rd | 12 +++ man/tar_files.Rd | 27 ++++++-- man/tar_files_input.Rd | 2 man/tar_force.Rd | 12 +++ man/tar_formats.Rd | 12 +++ man/tar_formats_superseded.Rd | 12 +++ man/tar_group_by.Rd | 12 +++ man/tar_group_count.Rd | 12 +++ man/tar_group_select.Rd | 12 +++ man/tar_group_size.Rd | 12 +++ man/tar_knit.Rd | 2 man/tar_map2.Rd | 12 ++- man/tar_map2_count.Rd | 12 ++- man/tar_map2_size.Rd | 12 ++- man/tar_map_rep.Rd | 12 ++- man/tar_quarto.Rd | 6 + man/tar_quarto_files_get_source_files.Rd | 1 man/tar_quarto_rep.Rd | 6 + man/tar_quarto_run.Rd | 4 - man/tar_render.Rd | 2 man/tar_render_rep.Rd | 2 man/tar_rep.Rd | 2 man/tar_rep2.Rd | 2 man/tar_rep_index.Rd |only man/tar_rep_map.Rd | 12 +++ man/tar_rep_map_raw.Rd | 12 +++ man/tar_skip.Rd | 12 +++ tests/testthat/helper-utils.R | 1 tests/testthat/test-class_step.R |only tests/testthat/test-tar_map_rep.R | 55 +++++++++++++---- tests/testthat/test-tar_quarto_files.R | 4 - tests/testthat/test-tar_rep_index.R |only 52 files changed, 452 insertions(+), 172 deletions(-)
More information about StratifiedSampling at CRAN
Permanent link
Title: Analysing Accelerometer Data Using Hidden Markov Models
Description: Analysing time-series accelerometer data to quantify length and
intensity of physical activity using hidden Markov models.
It also contains the traditional cut-off point method.
Witowski V, Foraita R, Pitsiladis Y, Pigeot I, Wirsik N (2014).
<doi:10.1371/journal.pone.0114089>.
Author: Vitali Witowski [aut],
Foraita Ronja [cre, aut]
Maintainer: Foraita Ronja <foraita@leibniz-bips.de>
Diff between HMMpa versions 1.0.1 dated 2018-11-15 and 1.0.2 dated 2025-01-31
DESCRIPTION | 33 ++ MD5 | 71 +++--- NAMESPACE | 34 ++- NEWS.md |only R/AIC_HMM.R | 68 +++++- R/BIC_HMM.R | 67 +++++ R/Baum_Welch_algorithm.R | 172 +++++++++++++-- R/HMM_based_method.R | 346 +++++++++++++++++++++++------- R/HMM_decoding.R | 204 ++++++++++++++++-- R/HMM_simulation.R | 226 ++++++++++++++++--- R/HMM_training.R | 197 +++++++++++++++-- R/HMMpa-package.R |only R/Viterbi_algorithm.R | 283 +++++++++++++++---------- R/cut_off_point_method.R | 386 +++++++++++++++++++++++++++------- R/dgenpois.R | 44 +++ R/direct_numerical_maximization.R | 124 +++++++++- R/forward_backward_algorithm.R | 396 ++++++++++++++++++++--------------- R/initial_parameter_training.R | 168 +++++++++++--- R/local_decoding_algorithm.R | 127 +++++++++-- R/pgenpois.R | 56 ++++ R/rgenpois.R | 49 +++- README.md |only build |only man/AIC_HMM.Rd | 96 +++----- man/BIC_HMM.Rd |only man/Baum_Welch_algorithm.Rd | 282 ++++++++++++++---------- man/HMM_based_method.Rd | 386 ++++++++++++++++++---------------- man/HMM_decoding.Rd | 302 +++++++++++++------------- man/HMM_simulation.Rd | 291 +++++++++++++------------ man/HMM_training.Rd | 305 +++++++++++++++----------- man/HMMpa-package.Rd | 393 +++++++++++++--------------------- man/Viterbi_algorithm.Rd | 161 ++++++++------ man/cut_off_point_method.Rd | 295 +++++++++++++------------- man/dgenpois.Rd | 75 +++--- man/direct_numerical_maximization.Rd | 198 +++++++++-------- man/forward_backward_algorithm.Rd | 174 +++++++-------- man/initial_parameter_training.Rd | 152 +++++++------ man/local_decoding_algorithm.Rd | 158 ++++++++----- man/pgenpois.Rd |only man/rgenpois.Rd |only 40 files changed, 4078 insertions(+), 2241 deletions(-)
Title: Distance Metrics for High-Dimensional Clustering
Description: We provide three distance metrics for measuring the separation between two clusters in high-dimensional spaces. The first metric is the centroid distance, which calculates the Euclidean distance between the centers of the two groups. The second is a ridge Mahalanobis distance, which incorporates a ridge correction constant, alpha, to ensure that the covariance matrix is invertible. The third metric is the maximal data piling distance, which computes the orthogonal distance between the affine spaces spanned by each class. These three distances are asymptotically interconnected and are applicable in tasks such as discrimination, clustering, and outlier detection in high-dimensional settings.
Author: Jung Ae Lee [aut, cre],
Jeongyoun Ahn [aut]
Maintainer: Jung Ae Lee <jungaeleeb@gmail.com>
Diff between distanceHD versions 1.0 dated 2025-01-30 and 1.2 dated 2025-01-31
DESCRIPTION | 35 ++++++++++++++++------------------- MD5 | 4 ++-- man/dist_mdp.Rd | 2 +- 3 files changed, 19 insertions(+), 22 deletions(-)
Title: Comparison of Bioregionalisation Methods
Description: The main purpose of this package is to propose a transparent methodological framework to compare bioregionalisation methods based on hierarchical and non-hierarchical clustering algorithms (Kreft & Jetz (2010) <doi:10.1111/j.1365-2699.2010.02375.x>) and network algorithms (Lenormand et al. (2019) <doi:10.1002/ece3.4718> and Leroy et al. (2019) <doi:10.1111/jbi.13674>).
Author: Maxime Lenormand [aut, cre] ,
Boris Leroy [aut] ,
Pierre Denelle [aut]
Maintainer: Maxime Lenormand <maxime.lenormand@inrae.fr>
Diff between bioregion versions 1.1.1-1 dated 2024-11-11 and 1.2.0 dated 2025-01-31
bioregion-1.1.1-1/bioregion/R/compare_partitions.R |only bioregion-1.1.1-1/bioregion/R/map_clusters.R |only bioregion-1.1.1-1/bioregion/R/partition_metrics.R |only bioregion-1.1.1-1/bioregion/R/subset_node.R |only bioregion-1.1.1-1/bioregion/build/stage23.rdb |only bioregion-1.1.1-1/bioregion/man/compare_partitions.Rd |only bioregion-1.1.1-1/bioregion/man/figures/install_binaries_1.png |only bioregion-1.1.1-1/bioregion/man/figures/install_binaries_2.png |only bioregion-1.1.1-1/bioregion/man/figures/install_binaries_3.png |only bioregion-1.1.1-1/bioregion/man/figures/install_binaries_4.png |only bioregion-1.1.1-1/bioregion/man/map_clusters.Rd |only bioregion-1.1.1-1/bioregion/man/partition_metrics.Rd |only bioregion-1.1.1-1/bioregion/man/subset_node.Rd |only bioregion-1.2.0/bioregion/DESCRIPTION | 16 bioregion-1.2.0/bioregion/MD5 | 169 - bioregion-1.2.0/bioregion/NAMESPACE | 16 bioregion-1.2.0/bioregion/NEWS.md | 107 - bioregion-1.2.0/bioregion/R/betapart_to_bioregion.R |only bioregion-1.2.0/bioregion/R/bioregion_metrics.R |only bioregion-1.2.0/bioregion/R/bioregionalization_metrics.R |only bioregion-1.2.0/bioregion/R/clustermetrics.R |only bioregion-1.2.0/bioregion/R/compare_bioregionalizations.R |only bioregion-1.2.0/bioregion/R/cut_tree.R | 246 +- bioregion-1.2.0/bioregion/R/data.R | 16 bioregion-1.2.0/bioregion/R/dissimilarity.R | 110 - bioregion-1.2.0/bioregion/R/exportGDF.R |only bioregion-1.2.0/bioregion/R/find_optimal_n.R | 509 ++-- bioregion-1.2.0/bioregion/R/generic_functions.R | 116 + bioregion-1.2.0/bioregion/R/hclu_diana.R | 141 - bioregion-1.2.0/bioregion/R/hclu_hierarclust.R | 539 +++-- bioregion-1.2.0/bioregion/R/hclu_optics.R | 96 bioregion-1.2.0/bioregion/R/install_binaries.R | 1041 +++++----- bioregion-1.2.0/bioregion/R/iterative_hierarchical_consensus_tree.R |only bioregion-1.2.0/bioregion/R/map_bioregions.R |only bioregion-1.2.0/bioregion/R/mat_to_net.R | 63 bioregion-1.2.0/bioregion/R/net_to_mat.R | 70 bioregion-1.2.0/bioregion/R/netclu_beckett.R | 148 - bioregion-1.2.0/bioregion/R/netclu_greedy.R | 87 bioregion-1.2.0/bioregion/R/netclu_infomap.R | 218 +- bioregion-1.2.0/bioregion/R/netclu_labelprop.R | 103 bioregion-1.2.0/bioregion/R/netclu_leadingeigen.R | 108 - bioregion-1.2.0/bioregion/R/netclu_leiden.R | 131 - bioregion-1.2.0/bioregion/R/netclu_louvain.R | 221 +- bioregion-1.2.0/bioregion/R/netclu_oslom.R | 204 + bioregion-1.2.0/bioregion/R/netclu_walktrap.R | 96 bioregion-1.2.0/bioregion/R/nhclu_affprop.R |only bioregion-1.2.0/bioregion/R/nhclu_clara.R | 141 - bioregion-1.2.0/bioregion/R/nhclu_clarans.R | 113 - bioregion-1.2.0/bioregion/R/nhclu_dbscan.R | 164 - bioregion-1.2.0/bioregion/R/nhclu_kmeans.R | 148 - bioregion-1.2.0/bioregion/R/nhclu_pam.R | 135 - bioregion-1.2.0/bioregion/R/package.R | 6 bioregion-1.2.0/bioregion/R/similarity.R | 126 - bioregion-1.2.0/bioregion/R/similarity_dissimilarity_conversion.R | 75 bioregion-1.2.0/bioregion/R/site_species_metrics.R |only bioregion-1.2.0/bioregion/R/site_species_subset.R |only bioregion-1.2.0/bioregion/R/utils.R | 284 +- bioregion-1.2.0/bioregion/README.md | 20 bioregion-1.2.0/bioregion/build/partial.rdb |binary bioregion-1.2.0/bioregion/inst/REFERENCES.bib | 530 ++--- bioregion-1.2.0/bioregion/inst/doc/bioregion.Rmd | 31 bioregion-1.2.0/bioregion/inst/doc/bioregion.html | 32 bioregion-1.2.0/bioregion/man/betapart_to_bioregion.Rd |only bioregion-1.2.0/bioregion/man/bioregion_metrics.Rd |only bioregion-1.2.0/bioregion/man/bioregionalization_metrics.Rd |only bioregion-1.2.0/bioregion/man/compare_bioregionalizations.Rd |only bioregion-1.2.0/bioregion/man/cut_tree.Rd | 117 - bioregion-1.2.0/bioregion/man/dissimilarity.Rd | 96 bioregion-1.2.0/bioregion/man/dissimilarity_to_similarity.Rd | 31 bioregion-1.2.0/bioregion/man/figures/zscore_scheme.svg |only bioregion-1.2.0/bioregion/man/find_optimal_n.Rd | 263 -- bioregion-1.2.0/bioregion/man/fishdf.Rd | 4 bioregion-1.2.0/bioregion/man/fishsf.Rd | 4 bioregion-1.2.0/bioregion/man/hclu_diana.Rd | 69 bioregion-1.2.0/bioregion/man/hclu_hierarclust.Rd | 238 +- bioregion-1.2.0/bioregion/man/hclu_optics.Rd | 76 bioregion-1.2.0/bioregion/man/install_binaries.Rd | 51 bioregion-1.2.0/bioregion/man/map_bioregions.Rd |only bioregion-1.2.0/bioregion/man/mat_to_net.Rd | 43 bioregion-1.2.0/bioregion/man/net_to_mat.Rd | 60 bioregion-1.2.0/bioregion/man/netclu_beckett.Rd | 108 - bioregion-1.2.0/bioregion/man/netclu_greedy.Rd | 37 bioregion-1.2.0/bioregion/man/netclu_infomap.Rd | 113 - bioregion-1.2.0/bioregion/man/netclu_labelprop.Rd | 66 bioregion-1.2.0/bioregion/man/netclu_leadingeigen.Rd | 71 bioregion-1.2.0/bioregion/man/netclu_leiden.Rd | 92 bioregion-1.2.0/bioregion/man/netclu_louvain.Rd | 150 - bioregion-1.2.0/bioregion/man/netclu_oslom.Rd | 111 - bioregion-1.2.0/bioregion/man/netclu_walktrap.Rd | 59 bioregion-1.2.0/bioregion/man/nhclu_affprop.Rd |only bioregion-1.2.0/bioregion/man/nhclu_clara.Rd | 89 bioregion-1.2.0/bioregion/man/nhclu_clarans.Rd | 73 bioregion-1.2.0/bioregion/man/nhclu_dbscan.Rd | 147 - bioregion-1.2.0/bioregion/man/nhclu_kmeans.Rd | 102 bioregion-1.2.0/bioregion/man/nhclu_pam.Rd | 99 bioregion-1.2.0/bioregion/man/similarity.Rd | 98 bioregion-1.2.0/bioregion/man/similarity_to_dissimilarity.Rd | 27 bioregion-1.2.0/bioregion/man/site_species_metrics.Rd |only bioregion-1.2.0/bioregion/man/site_species_subset.Rd |only bioregion-1.2.0/bioregion/man/vegedf.Rd | 4 bioregion-1.2.0/bioregion/man/vegesf.Rd | 4 bioregion-1.2.0/bioregion/vignettes/bioregion.Rmd | 31 102 files changed, 4969 insertions(+), 3940 deletions(-)
Title: Load US Census Boundary and Attribute Data as 'tidyverse' and
'sf'-Ready Data Frames
Description: An integrated R interface to several United States Census Bureau
APIs (<https://www.census.gov/data/developers/data-sets.html>) and the US Census Bureau's
geographic boundary files. Allows R users to return Census and ACS data as
tidyverse-ready data frames, and optionally returns a list-column with feature geometry for mapping
and spatial analysis.
Author: Kyle Walker [aut, cre],
Matt Herman [aut],
Kris Eberwein [ctb]
Maintainer: Kyle Walker <kyle@walker-data.com>
Diff between tidycensus versions 1.7.0 dated 2025-01-23 and 1.7.1 dated 2025-01-31
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/pums.R | 15 +++++++++++---- data/pums_variables.rda |binary man/pums_variables.Rd | 2 +- 5 files changed, 20 insertions(+), 13 deletions(-)
Title: Statistical Functions for the
Maxwell-Boltzmann-Bose-Einstein-Fermi-Dirac (MBBEFD) Family of
Distributions
Description: Provides probability mass, distribution, quantile, random variate
generation, and method-of-moments parameter fitting for the MBBEFD family of
distributions used in insurance modeling as described in Bernegger (1997)
<doi:10.2143/AST.27.1.563208> without any external dependencies.
Author: Avraham Adler [aut, cre, cph]
Maintainer: Avraham Adler <Avraham.Adler@gmail.com>
Diff between MBBEFDLite versions 0.0.4 dated 2024-07-24 and 0.0.5 dated 2025-01-31
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ R/mom.R | 8 +++++--- build/partial.rdb |binary inst/CITATION | 2 +- inst/NEWS.Rd | 15 +++++++++++++++ inst/tinytest/test_package_metadata.R | 4 ++-- 7 files changed, 32 insertions(+), 15 deletions(-)
Title: Construct Modeling Packages
Description: Building modeling packages is hard. A large amount of effort
generally goes into providing an implementation for a new method that
is efficient, fast, and correct, but often less emphasis is put on the
user interface. A good interface requires specialized knowledge about
S3 methods and formulas, which the average package developer might not
have. The goal of 'hardhat' is to reduce the burden around building
new modeling packages by providing functionality for preprocessing,
predicting, and validating input.
Author: Hannah Frick [aut, cre] ,
Davis Vaughan [aut],
Max Kuhn [aut],
Posit Software, PBC [cph, fnd]
Maintainer: Hannah Frick <hannah@posit.co>
Diff between hardhat versions 1.4.0 dated 2024-06-02 and 1.4.1 dated 2025-01-31
DESCRIPTION | 12 MD5 | 218 +++--- NAMESPACE | 14 NEWS.md | 8 R/blueprint-formula-default.R | 137 ++- R/blueprint-recipe-default.R | 107 +- R/blueprint-xy-default.R | 78 +- R/blueprint.R | 7 R/case-weights.R | 10 R/classes.R | 9 R/constructor.R | 19 R/encoding.R | 4 R/extract.R | 4 R/forge.R | 7 R/hardhat-package.R | 2 R/import-standalone-obj-type.R | 29 R/import-standalone-types-check.R | 20 R/intercept.R | 28 R/model-frame.R | 9 R/model-matrix.R | 38 - R/model-offset.R | 19 R/mold.R | 10 R/print.R | 29 R/ptype.R | 8 R/quantile-pred.R |only R/recompose.R | 24 R/scream.R | 23 R/shrink.R | 10 R/sparsevctrs.R |only R/spruce.R | 6 R/standardize.R | 20 R/table.R | 10 R/tune.R | 9 R/use.R | 12 R/util.R | 45 - R/validation.R | 182 ++--- README.md | 2 build/vignette.rds |binary inst/doc/forge.R | 15 inst/doc/forge.Rmd | 9 inst/doc/forge.html | 348 ++++----- inst/doc/mold.R | 11 inst/doc/mold.Rmd | 9 inst/doc/mold.html | 470 ++++++------- inst/doc/package.R | 15 inst/doc/package.Rmd | 9 inst/doc/package.html | 756 ++++++++++----------- man/add_intercept_column.Rd | 6 man/check_quantile_levels.Rd |only man/contr_one_hot.Rd | 71 + man/default_recipe_blueprint.Rd | 4 man/extract_ptype.Rd | 6 man/get_data_classes.Rd | 6 man/model_frame.Rd | 6 man/model_matrix.Rd | 6 man/model_offset.Rd | 6 man/mold.Rd | 4 man/quantile_pred.Rd |only man/recompose.Rd | 4 man/rmd |only man/run-forge.Rd | 8 man/run-mold.Rd | 8 man/scream.Rd | 6 man/shrink.Rd | 6 man/tune.Rd | 2 man/validate_column_names.Rd | 6 man/validate_outcomes_are_binary.Rd | 6 man/validate_outcomes_are_factors.Rd | 6 man/validate_outcomes_are_numeric.Rd | 6 man/validate_prediction_size.Rd | 6 man/validate_predictors_are_numeric.Rd | 6 tests/testthat/_snaps/blueprint-formula-default.md |only tests/testthat/_snaps/blueprint.md |only tests/testthat/_snaps/constructor.md | 30 tests/testthat/_snaps/encoding.md | 2 tests/testthat/_snaps/forge-formula.md | 116 ++- tests/testthat/_snaps/forge-recipe.md | 63 + tests/testthat/_snaps/forge-xy.md | 85 ++ tests/testthat/_snaps/forge.md | 2 tests/testthat/_snaps/intercept.md | 11 tests/testthat/_snaps/levels.md |only tests/testthat/_snaps/model-matrix.md |only tests/testthat/_snaps/model-offset.md |only tests/testthat/_snaps/mold-formula.md | 155 +++- tests/testthat/_snaps/mold-recipe.md |only tests/testthat/_snaps/mold.md | 2 tests/testthat/_snaps/print.md | 68 - tests/testthat/_snaps/quantile-pred.md |only tests/testthat/_snaps/recompose.md | 10 tests/testthat/_snaps/spruce.md | 72 ++ tests/testthat/_snaps/standardize.md | 34 tests/testthat/_snaps/table.md | 4 tests/testthat/_snaps/tune.md |only tests/testthat/_snaps/use.md | 4 tests/testthat/_snaps/validation.md |only tests/testthat/helper-sparsevctrs.R |only tests/testthat/test-blueprint-formula-default.R |only tests/testthat/test-blueprint.R |only tests/testthat/test-constructor.R | 11 tests/testthat/test-forge-formula.R | 118 +-- tests/testthat/test-forge-recipe.R | 133 ++- tests/testthat/test-forge-xy.R | 110 +-- tests/testthat/test-intercept.R | 6 tests/testthat/test-levels.R | 6 tests/testthat/test-model-matrix.R | 35 tests/testthat/test-model-offset.R | 12 tests/testthat/test-mold-formula.R | 108 +-- tests/testthat/test-mold-recipe.R | 52 + tests/testthat/test-print.R | 2 tests/testthat/test-quantile-pred.R |only tests/testthat/test-recompose.R | 65 + tests/testthat/test-spruce.R | 37 - tests/testthat/test-standardize.R | 10 tests/testthat/test-tune.R | 6 tests/testthat/test-use.R | 6 tests/testthat/test-validation.R | 78 +- vignettes/forge.Rmd | 9 vignettes/mold.Rmd | 9 vignettes/package.Rmd | 9 119 files changed, 2756 insertions(+), 1720 deletions(-)
More information about ggsurveillance at CRAN
Permanent link
Title: Plotting Expected Goals (xG) Stats with 'Understat' Data
Description: Scrapes shots data from 'Understat' <https://understat.com/> and visualizes it using interactive plots:
- A detailed shot map displaying the location, type, and xG value of shots taken by both teams.
- An xG timeline chart showing the cumulative xG for each team over time, annotated with the details of scored goals.
Author: Aymen Nasri [aut, cre, cph]
Maintainer: Aymen Nasri <aymennasrii@proton.me>
Diff between ggfootball versions 0.1.0 dated 2025-01-30 and 0.2.0 dated 2025-01-31
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- NEWS.md | 19 ++++++++++++++----- R/xg_chart.R | 13 +++++++------ R/xg_map.R | 4 ++-- README.md | 10 ++++++---- man/xg_chart.Rd | 17 ++++++++++------- man/xg_map.Rd | 6 +++--- 8 files changed, 53 insertions(+), 38 deletions(-)
Title: Generator of Main Scientific References
Description: Generates a list, with a size defined by the user, containing the main scientific references and the frequency distribution of authors and journals in the list obtained.
The database is a dataframe with academic production metadata made available by bibliographic collections such as Scopus, Web of Science, etc.
The temporal evolution of scientific production on a given topic is presented and ordered lists of articles are constructed by number of citations and of authors and journals by level of productivity.
Massimo Aria, Corrado Cuccurullo. (2017) <doi:10.1016/j.joi.2017.08.007>.
Caibo Zhou, Wenyan Song. (2021) <doi:10.1016/j.jclepro.2021.126943>.
Author: Marcio Eustaquio [aut, cre]
Maintainer: Marcio Eustaquio <marcioeustaquio@id.uff.br>
Diff between bibliorefer versions 0.1.0 dated 2024-03-08 and 0.1.1 dated 2025-01-31
DESCRIPTION | 6 +++--- MD5 | 12 +++++++----- NAMESPACE | 1 + R/ajust_pagin.R |only R/crit_quant.R | 2 +- R/principal_lister.R | 30 ++++++++++++++++++++++-------- man/ajust_pagin.Rd |only man/crit_quant.Rd | 2 +- 8 files changed, 35 insertions(+), 18 deletions(-)
Title: Tests of Independence Between Innovations of Generalized Error
Models
Description: Computation of test statistics of independence between (continuous) innovations of time series. They can be used with stochastic volatility models and Hidden Markov Models (HMM). This improves the results in Duchesne, Ghoudi & Remillard (2012) <doi:10.1002/cjs.11141>.
Author: Kilani Ghoudi [aut, ctb, cph],
Bouchra R. Nasri [aut, ctb, cph],
Bruno N Remillard [aut, cre, cph],
Pierre Duchesne [aut, ctb, cph]
Maintainer: Bruno N Remillard <bruno.remillard@hec.ca>
Diff between IndGenErrors versions 0.1.4 dated 2023-06-30 and 0.1.6 dated 2025-01-31
IndGenErrors-0.1.4/IndGenErrors/R/Dependogram.R |only IndGenErrors-0.1.4/IndGenErrors/man/Dependogram.Rd |only IndGenErrors-0.1.6/IndGenErrors/DESCRIPTION | 16 +++--- IndGenErrors-0.1.6/IndGenErrors/MD5 | 26 ++++++----- IndGenErrors-0.1.6/IndGenErrors/NAMESPACE | 8 ++- IndGenErrors-0.1.6/IndGenErrors/R/CrossCorrelogram.R | 2 IndGenErrors-0.1.6/IndGenErrors/R/crosscor_3series.R | 16 ++---- IndGenErrors-0.1.6/IndGenErrors/R/crossdep_2series.R |only IndGenErrors-0.1.6/IndGenErrors/R/crossdep_3series.R |only IndGenErrors-0.1.6/IndGenErrors/R/cvm_2series.R | 2 IndGenErrors-0.1.6/IndGenErrors/R/cvm_3series.R | 9 --- IndGenErrors-0.1.6/IndGenErrors/R/dependogram.R |only IndGenErrors-0.1.6/IndGenErrors/man/CrossCorrelogram.Rd | 7 ++ IndGenErrors-0.1.6/IndGenErrors/man/crosscor_3series.Rd | 6 +- IndGenErrors-0.1.6/IndGenErrors/man/crossdep_2series.Rd |only IndGenErrors-0.1.6/IndGenErrors/man/crossdep_3series.Rd |only IndGenErrors-0.1.6/IndGenErrors/man/dependogram.Rd |only IndGenErrors-0.1.6/IndGenErrors/src/calcul_cvm_crosscor_3d.c | 3 - 18 files changed, 49 insertions(+), 46 deletions(-)
Title: Analysis of Intra Annual Density Fluctuations
Description: Calculate false ring proportions from data frames of intra annual
density fluctuations.
Author: Konrad Mayer [aut, cre],
Filipe Campelo [aut]
Maintainer: Konrad Mayer <konrad.mayer@gmail.com>
Diff between iadf versions 0.1.2 dated 2021-05-24 and 0.1.3 dated 2025-01-31
DESCRIPTION | 8 - MD5 | 18 +- NAMESPACE | 1 NEWS.md | 4 R/false_ring_proportion.R | 231 ++++++++++--------------------------- R/tidy.R | 9 - README.md | 28 ++-- build/vignette.rds |binary inst/doc/falsering-proportion.R | 24 +-- inst/doc/falsering-proportion.html | 98 +++++++++------ 10 files changed, 178 insertions(+), 243 deletions(-)
Title: Optimal Subset Selection for Transformation Models
Description: Greedy optimal subset selection for transformation models
(Hothorn et al., 2018, <doi:10.1111/sjos.12291> ) based on the abess
algorithm (Zhu et al., 2020, <doi:10.1073/pnas.2014241117> ). Applicable to
models from packages 'tram' and 'cotram'. Application to shift-scale
transformation models are described in Siegfried et al. (2024,
<doi:10.1080/00031305.2023.2203177>).
Author: Lucas Kook [aut, cre] ,
Sandra Siegfried [ctb],
Torsten Hothorn [ctb]
Maintainer: Lucas Kook <lucasheinrich.kook@gmail.com>
Diff between tramvs versions 0.0-6 dated 2024-09-04 and 0.0-7 dated 2025-01-31
DESCRIPTION | 17 ++++--- MD5 | 8 +-- R/tramvs.R | 115 +++++++++++++++++++++++++++++++++------------------- build/vignette.rds |binary inst/doc/tramvs.pdf |binary 5 files changed, 87 insertions(+), 53 deletions(-)
Title: Functions for Epidemiological Analysis using Population Data
Description: Enables computation of epidemiological statistics, including
those where counts or mortality rates of the reference population are
used. Currently supported: excess hazard models (Dickman, Sloggett,
Hills, and Hakulinen (2012) <doi:10.1002/sim.1597>), rates, mean
survival times, relative/net survival (in particular the Ederer II
(Ederer and Heise (1959)) and Pohar Perme (Pohar Perme, Stare, and
Esteve (2012) <doi:10.1111/j.1541-0420.2011.01640.x>) estimators), and
standardized incidence and mortality ratios, all of which can be
easily adjusted for by covariates such as age. Fast splitting and
aggregation of 'Lexis' objects (from package 'Epi') and other
computations achieved using 'data.table'.
Author: Joonas Miettinen [cre, aut] ,
Matti Rantanen [aut],
Karri Seppa [ctb]
Maintainer: Joonas Miettinen <joonas.miettinen@cancer.fi>
Diff between popEpi versions 0.4.12 dated 2024-05-10 and 0.4.13 dated 2025-01-31
DESCRIPTION | 11 LICENSE | 2 MD5 | 240 ++-- NEWS.md | 5 R/S3_definitions.R | 802 +++++++-------- R/Surv.R | 18 R/aggregating.R | 440 ++++---- R/data_document.R | 66 - R/direct_adjusting.R | 180 +-- R/evaluation.R | 4 R/flexyargs.R | 182 +-- R/fractional_years.R | 112 +- R/incidence_rates.R | 186 +-- R/incidence_rates_utils.R | 70 - R/lexpand.R | 766 +++++++------- R/long_df_and_array.R | 86 - R/ltable.R | 220 ++-- R/mean_survival.R | 458 ++++---- R/popEpi-package.R | 24 R/pophaz.R | 58 - R/prevalence.R | 86 - R/relative_poisson.R | 398 +++---- R/relative_poisson_net_survival.R | 84 - R/sir.R | 874 ++++++++--------- R/sir_utils.R | 68 - R/splitLexisDT.R | 197 +-- R/splitMulti.R | 226 ++-- R/splitting_utility_functions.R | 704 ++++++------- R/startup_message.R | 6 R/survival_aggregated.R | 574 +++++------ R/survival_lexis.R | 324 +++--- R/survival_utility_functions.R | 278 ++--- R/utility_functions.R | 619 +++++------- R/weighted_table.R | 336 +++--- README.md | 42 build/partial.rdb |binary build/vignette.rds |binary inst/doc/sir.html | 4 inst/doc/survtab_examples.html | 4 man/ICSS.Rd | 8 man/Lexis_fpa.Rd | 40 man/Surv.Rd | 2 man/adjust.Rd | 2 man/aggre.Rd | 77 - man/all_names_present.Rd | 8 man/array_df_ratetable_utils.Rd | 144 +- man/as.Date.yrs.Rd | 8 man/as.aggre.Rd | 12 man/cast_simple.Rd | 16 man/cut_bound.Rd | 2 man/direct_standardization.Rd | 30 man/fac2num.Rd | 6 man/flexible_argument.Rd | 24 man/get.yrs.Rd | 43 man/is.Date.Rd | 9 man/is_leap_year.Rd | 4 man/lexpand.Rd | 182 +-- man/lines.sirspline.Rd | 6 man/lines.survmean.Rd | 8 man/lines.survtab.Rd | 12 man/ltable.Rd | 90 - man/meanpop_fi.Rd | 14 man/na2zero.Rd | 6 man/plot.rate.Rd | 8 man/plot.sir.Rd | 26 man/plot.sirspline.Rd | 6 man/plot.survmean.Rd | 8 man/plot.survtab.Rd | 14 man/popEpi-package.Rd | 8 man/pophaz.Rd | 16 man/popmort.Rd | 20 man/prepExpo.Rd | 34 man/print.aggre.Rd | 8 man/print.rate.Rd | 4 man/print.survtab.Rd | 8 man/rate.Rd | 30 man/rate_ratio.Rd | 16 man/relpois.Rd | 29 man/relpois_ag.Rd | 22 man/robust_values.Rd | 2 man/rpcurve.Rd | 16 man/setaggre.Rd | 16 man/setclass.Rd | 4 man/setcolsnull.Rd | 6 man/sibr.Rd | 12 man/sir.Rd | 94 - man/sir_exp.Rd | 26 man/sir_ratio.Rd | 16 man/sire.Rd | 12 man/sirspline.Rd | 43 man/splitLexisDT.Rd | 29 man/splitMulti.Rd | 76 - man/stdpop101.Rd | 4 man/stdpop18.Rd | 10 man/summary.aggre.Rd | 4 man/summary.survtab.Rd | 20 man/survmean.Rd | 44 man/survtab.Rd | 167 +-- man/survtab_ag.Rd | 199 +-- man/try2int.Rd | 4 tests/testthat/test_Surv.R | 4 tests/testthat/test_aggre.R | 110 +- tests/testthat/test_epi.R | 10 tests/testthat/test_expo.R | 38 tests/testthat/test_lexpand.R | 218 ++-- tests/testthat/test_prevtab.R | 16 tests/testthat/test_rate.R | 112 +- tests/testthat/test_relpois_mean_curve.R | 24 tests/testthat/test_sir.R | 232 ++-- tests/testthat/test_splitLexisDT.R | 70 - tests/testthat/test_splitMulti.R | 82 - tests/testthat/test_splitting_attributes.R | 36 tests/testthat/test_splitting_breaks.R | 36 tests/testthat/test_splitting_randomly_on_fixed_data.R | 16 tests/testthat/test_survmean.R | 174 +-- tests/testthat/test_survtab_adjusted.R | 60 - tests/testthat/test_survtab_bad_surv_ints.R | 34 tests/testthat/test_survtab_relative.R | 97 - tests/testthat/test_survtab_usage.R | 256 ++-- tests/testthat/test_utils.R | 282 ++--- tests/testthat/test_weighter.R | 90 - 121 files changed, 6271 insertions(+), 6294 deletions(-)
Title: Test Theory Analysis and Biclustering
Description: Implements comprehensive test data engineering methods as described in
Shojima (2022, ISBN:978-9811699856). Provides statistical techniques for
engineering and processing test data: Classical Test Theory (CTT) with
reliability coefficients for continuous ability assessment; Item Response
Theory (IRT) including Rasch, 2PL, and 3PL models with item/test information
functions; Latent Class Analysis (LCA) for nominal clustering; Latent Rank
Analysis (LRA) for ordinal clustering with automatic determination of cluster
numbers; Biclustering methods including infinite relational models for
simultaneous clustering of examinees and items without predefined cluster
numbers; and Bayesian Network Models (BNM) for visualizing inter-item
dependencies. Features local dependence analysis through LRA and biclustering,
parameter estimation, dimensionality assessment, and network structure
visualization for educational, psychological, and social science research.
Author: Koji Kosugi [aut, cre]
Maintainer: Koji Kosugi <kosugitti@gmail.com>
Diff between exametrika versions 1.1.0 dated 2024-11-22 and 1.2.0 dated 2025-01-31
exametrika-1.1.0/exametrika/R/BinaryFunctionFactory.R |only exametrika-1.1.0/exametrika/R/Ch00dataFormat.R |only exametrika-1.1.0/exametrika/R/Ch02TestItemAnalysis.R |only exametrika-1.1.0/exametrika/R/Ch03CTT.R |only exametrika-1.1.0/exametrika/R/Ch04AbilityEstimation.R |only exametrika-1.1.0/exametrika/R/Ch04IRTbaseFunctions.R |only exametrika-1.1.0/exametrika/R/Ch04ParameterEstimation.R |only exametrika-1.1.0/exametrika/R/Ch07InfiniteRelationalModel.R |only exametrika-1.1.0/exametrika/R/EMclus.R |only exametrika-1.1.0/exametrika/R/IRPindex.R |only exametrika-1.1.0/exametrika/R/ModelFitModule.R |only exametrika-1.1.0/exametrika/R/ch05LCA.R |only exametrika-1.1.0/exametrika/R/ch06LRA.R |only exametrika-1.1.0/exametrika/R/ch07Biclustering.R |only exametrika-1.1.0/exametrika/R/ch08BNM.R |only exametrika-1.1.0/exametrika/R/ch08BNM_GA.R |only exametrika-1.1.0/exametrika/R/ch08GA_utils.R |only exametrika-1.1.0/exametrika/R/ch09LDLRA.R |only exametrika-1.1.0/exametrika/R/ch09LDLRA_GA.R |only exametrika-1.1.0/exametrika/R/ch10LDB.R |only exametrika-1.1.0/exametrika/R/ch11BINET.R |only exametrika-1.1.0/exametrika/R/dataset_explain.R |only exametrika-1.1.0/exametrika/R/exametrikaPlot.R |only exametrika-1.1.0/exametrika/R/exametrikaPrint.R |only exametrika-1.1.0/exametrika/R/progressbar.R |only exametrika-1.1.0/exametrika/man/createBinaryFunction.Rd |only exametrika-1.1.0/exametrika/man/dataFormat.long.Rd |only exametrika-1.2.0/exametrika/DESCRIPTION | 9 exametrika-1.2.0/exametrika/MD5 | 223 +++++----- exametrika-1.2.0/exametrika/NAMESPACE | 47 ++ exametrika-1.2.0/exametrika/NEWS.md | 46 +- exametrika-1.2.0/exametrika/R/00_EMclus.R |only exametrika-1.2.0/exametrika/R/00_IRPindex.R |only exametrika-1.2.0/exametrika/R/00_ModelFitModule.R |only exametrika-1.2.0/exametrika/R/00_QitemFunctions.R |only exametrika-1.2.0/exametrika/R/00_dataset_explain.R |only exametrika-1.2.0/exametrika/R/00_exametrikaPlot.R |only exametrika-1.2.0/exametrika/R/00_exametrikaPrint.R |only exametrika-1.2.0/exametrika/R/00_typeErrorMessage.R |only exametrika-1.2.0/exametrika/R/01_dataFormat.R |only exametrika-1.2.0/exametrika/R/02B_TestStatistics.R |only exametrika-1.2.0/exametrika/R/02C_ItemStatistics.R |only exametrika-1.2.0/exametrika/R/02D_StudentAnalysis.R |only exametrika-1.2.0/exametrika/R/02_TestItemFunctions.R |only exametrika-1.2.0/exametrika/R/03_CTT.R |only exametrika-1.2.0/exametrika/R/04A_IRTbaseFunctions.R |only exametrika-1.2.0/exametrika/R/04B_AbilityEstimation.R |only exametrika-1.2.0/exametrika/R/04C_ParameterEstimation.R |only exametrika-1.2.0/exametrika/R/05_LCA.R |only exametrika-1.2.0/exametrika/R/06_LRA.R |only exametrika-1.2.0/exametrika/R/07B_InfiniteRelationalModel.R |only exametrika-1.2.0/exametrika/R/07_Biclustering.R |only exametrika-1.2.0/exametrika/R/08A_BNM.R |only exametrika-1.2.0/exametrika/R/08B_GA_utils.R |only exametrika-1.2.0/exametrika/R/08C_BNM_GA.R |only exametrika-1.2.0/exametrika/R/09B_LDLRA_GA.R |only exametrika-1.2.0/exametrika/R/09_LDLRA.R |only exametrika-1.2.0/exametrika/R/10_LDB.R |only exametrika-1.2.0/exametrika/R/11_BINET.R |only exametrika-1.2.0/exametrika/README.md | 8 exametrika-1.2.0/exametrika/data/J12S5000.rda |binary exametrika-1.2.0/exametrika/data/J15S3810.rda |only exametrika-1.2.0/exametrika/data/J15S500.rda |binary exametrika-1.2.0/exametrika/data/J20S400.rda |binary exametrika-1.2.0/exametrika/data/J35S5000.rda |only exametrika-1.2.0/exametrika/data/J35S515.rda |binary exametrika-1.2.0/exametrika/data/J5S10.rda |binary exametrika-1.2.0/exametrika/man/AlphaCoefficient.Rd | 10 exametrika-1.2.0/exametrika/man/AlphaIfDel.Rd | 2 exametrika-1.2.0/exametrika/man/BINET.Rd | 2 exametrika-1.2.0/exametrika/man/BNM.Rd | 2 exametrika-1.2.0/exametrika/man/Biclustering.Rd | 2 exametrika-1.2.0/exametrika/man/Biserial_Correlation.Rd | 2 exametrika-1.2.0/exametrika/man/BitRespPtn.Rd | 2 exametrika-1.2.0/exametrika/man/CCRR.Rd | 7 exametrika-1.2.0/exametrika/man/CTT.Rd | 12 exametrika-1.2.0/exametrika/man/Dimensionality.Rd | 12 exametrika-1.2.0/exametrika/man/FieldAnalysis.Rd | 12 exametrika-1.2.0/exametrika/man/IIF2PLM.Rd | 2 exametrika-1.2.0/exametrika/man/IIF3PLM.Rd | 2 exametrika-1.2.0/exametrika/man/IRM.Rd | 2 exametrika-1.2.0/exametrika/man/IRT.Rd | 2 exametrika-1.2.0/exametrika/man/ITBiserial.Rd | 11 exametrika-1.2.0/exametrika/man/InterItemAnalysis.Rd | 7 exametrika-1.2.0/exametrika/man/ItemEntropy.Rd | 8 exametrika-1.2.0/exametrika/man/ItemFit.Rd | 2 exametrika-1.2.0/exametrika/man/ItemInformationFunc.Rd | 2 exametrika-1.2.0/exametrika/man/ItemLift.Rd | 7 exametrika-1.2.0/exametrika/man/ItemOdds.Rd | 7 exametrika-1.2.0/exametrika/man/ItemReport.Rd |only exametrika-1.2.0/exametrika/man/ItemStatistics.Rd | 2 exametrika-1.2.0/exametrika/man/ItemThreshold.Rd | 7 exametrika-1.2.0/exametrika/man/ItemTotalCorr.Rd | 7 exametrika-1.2.0/exametrika/man/J12S5000.Rd | 8 exametrika-1.2.0/exametrika/man/J15S3810.Rd |only exametrika-1.2.0/exametrika/man/J15S500.Rd | 8 exametrika-1.2.0/exametrika/man/J20S400.Rd | 8 exametrika-1.2.0/exametrika/man/J35S5000.Rd |only exametrika-1.2.0/exametrika/man/J35S515.Rd | 8 exametrika-1.2.0/exametrika/man/J5S10.Rd | 8 exametrika-1.2.0/exametrika/man/JCRR.Rd | 7 exametrika-1.2.0/exametrika/man/JointSampleSize.Rd | 7 exametrika-1.2.0/exametrika/man/LCA.Rd | 2 exametrika-1.2.0/exametrika/man/LDB.Rd | 2 exametrika-1.2.0/exametrika/man/LDLRA.Rd | 2 exametrika-1.2.0/exametrika/man/LD_param_est.Rd | 2 exametrika-1.2.0/exametrika/man/LRA.Rd | 2 exametrika-1.2.0/exametrika/man/LogisticModel.Rd | 2 exametrika-1.2.0/exametrika/man/MutualInformation.Rd | 7 exametrika-1.2.0/exametrika/man/OmegaCoefficient.Rd | 10 exametrika-1.2.0/exametrika/man/PSD_item_params.Rd | 2 exametrika-1.2.0/exametrika/man/PhiCoefficient.Rd | 7 exametrika-1.2.0/exametrika/man/RaschModel.Rd | 2 exametrika-1.2.0/exametrika/man/ScoreReport.Rd |only exametrika-1.2.0/exametrika/man/StrLearningGA_BNM.Rd | 2 exametrika-1.2.0/exametrika/man/StrLearningPBIL_BNM.Rd | 2 exametrika-1.2.0/exametrika/man/StrLearningPBIL_LDLRA.Rd | 2 exametrika-1.2.0/exametrika/man/StudentAnalysis.Rd | 2 exametrika-1.2.0/exametrika/man/TestFit.Rd | 2 exametrika-1.2.0/exametrika/man/TestFitSaturated.Rd | 2 exametrika-1.2.0/exametrika/man/TestInformationFunc.Rd | 2 exametrika-1.2.0/exametrika/man/TestStatistics.Rd | 37 + exametrika-1.2.0/exametrika/man/TetrachoricCorrelationMatrix.Rd | 7 exametrika-1.2.0/exametrika/man/ThreePLM.Rd | 2 exametrika-1.2.0/exametrika/man/TwoPLM.Rd | 2 exametrika-1.2.0/exametrika/man/asymprior.Rd | 2 exametrika-1.2.0/exametrika/man/calcFitIndices.Rd | 2 exametrika-1.2.0/exametrika/man/crr.Rd | 7 exametrika-1.2.0/exametrika/man/dataFormat.Rd | 44 + exametrika-1.2.0/exametrika/man/figures |only exametrika-1.2.0/exametrika/man/generate_category_labels.Rd |only exametrika-1.2.0/exametrika/man/longdataFormat.Rd |only exametrika-1.2.0/exametrika/man/maxParents_penalty.Rd | 2 exametrika-1.2.0/exametrika/man/nrs.Rd | 7 exametrika-1.2.0/exametrika/man/objective_function_IRT.Rd | 2 exametrika-1.2.0/exametrika/man/passage.Rd | 7 exametrika-1.2.0/exametrika/man/percentile.Rd | 7 exametrika-1.2.0/exametrika/man/plot.exametrika.Rd | 2 exametrika-1.2.0/exametrika/man/print.exametrika.Rd | 20 exametrika-1.2.0/exametrika/man/response_type_error.Rd |only exametrika-1.2.0/exametrika/man/slopeprior.Rd | 2 exametrika-1.2.0/exametrika/man/softmax.Rd | 2 exametrika-1.2.0/exametrika/man/sscore.Rd | 7 exametrika-1.2.0/exametrika/man/stanine.Rd | 7 exametrika-1.2.0/exametrika/man/tetrachoric.Rd | 2 145 files changed, 398 insertions(+), 346 deletions(-)
Title: 'DT' Extension for CRUD (Create, Read, Update, Delete)
Applications in 'shiny'
Description: The core of this package is a function eDT() which enhances DT::datatable() such that it can be used to interactively modify data in 'shiny'. By the use of generic 'dplyr' methods it supports many types of data storage, with relational databases ('dbplyr') being the main use case.
Author: Jasper Schelfhout [aut, cre],
Maxim Nazarov [rev],
Daan Seynaeve [rev],
Lennart Tuijnder [rev]
Maintainer: Jasper Schelfhout <jasper.schelfhout@openanalytics.eu>
Diff between editbl versions 1.0.5 dated 2024-05-21 and 1.1.0 dated 2025-01-31
editbl-1.0.5/editbl/man/createButtonsHTML.Rd |only editbl-1.1.0/editbl/DESCRIPTION | 12 editbl-1.1.0/editbl/MD5 | 49 editbl-1.1.0/editbl/NAMESPACE | 4 editbl-1.1.0/editbl/R/eDT.R | 553 +++++++--- editbl-1.1.0/editbl/R/utils.R | 20 editbl-1.1.0/editbl/README.md | 64 - editbl-1.1.0/editbl/build/vignette.rds |binary editbl-1.1.0/editbl/inst/NEWS | 4 editbl-1.1.0/editbl/inst/doc/howto_relational_db.html | 6 editbl-1.1.0/editbl/inst/doc/howto_relational_db_dm.html | 6 editbl-1.1.0/editbl/inst/doc/howto_row_level_access.R |only editbl-1.1.0/editbl/inst/doc/howto_row_level_access.html |only editbl-1.1.0/editbl/inst/doc/howto_row_level_access.rmd |only editbl-1.1.0/editbl/inst/doc/howto_switch_from_DT.html | 4 editbl-1.1.0/editbl/man/addButtons.Rd | 27 editbl-1.1.0/editbl/man/canXXXRowTemplate.Rd |only editbl-1.1.0/editbl/man/createButtons.Rd | 32 editbl-1.1.0/editbl/man/createDeleteButtonHTML.Rd |only editbl-1.1.0/editbl/man/createDeleteButtonHTML_shiny.Rd |only editbl-1.1.0/editbl/man/createEditButtonHTML.Rd |only editbl-1.1.0/editbl/man/createEditButtonHTML_shiny.Rd |only editbl-1.1.0/editbl/man/eDT.Rd | 38 editbl-1.1.0/editbl/man/eDTOutput.Rd | 3 editbl-1.1.0/editbl/man/evalCanDeleteRow.Rd |only editbl-1.1.0/editbl/man/evalCanEditRow.Rd |only editbl-1.1.0/editbl/man/initData.Rd | 16 editbl-1.1.0/editbl/man/overwriteDefaults.Rd |only editbl-1.1.0/editbl/tests/testthat/test-eDT.R | 41 editbl-1.1.0/editbl/tests/testthat/test-utils.R | 7 editbl-1.1.0/editbl/vignettes/howto_row_level_access.rmd |only editbl-1.1.0/editbl/vignettes/screenshots/howto_row_level_access_1.png |only editbl-1.1.0/editbl/vignettes/screenshots/howto_row_level_access_2.png |only 33 files changed, 669 insertions(+), 217 deletions(-)
Title: Spatial Ecology Miscellaneous Methods
Description: Collection of R functions and data sets for the support of spatial ecology analyses with a focus on pre, core and post modelling analyses of species distribution, niche quantification and community assembly. Written by current and former members and collaborators of the ecospat group of Antoine Guisan, Department of Ecology and Evolution (DEE) and Institute of Earth Surface Dynamics (IDYST), University of Lausanne, Switzerland. Read Di Cola et al. (2016) <doi:10.1111/ecog.02671> for details.
Author: Olivier Broennimann [cre, aut, ctb],
Valeria Di Cola [aut, ctb],
Blaise Petitpierre [ctb],
Frank Breiner [ctb],
Daniel Scherrer [ctb],
Manuela D`Amen [ctb],
Christophe Randin [ctb],
Robin Engler [ctb],
Wim Hordijk [ctb],
Heidi Mod [ctb],
Julien Potti [...truncated...]
Maintainer: Olivier Broennimann <olivier.broennimann@unil.ch>
Diff between ecospat versions 4.1.1 dated 2024-07-04 and 4.1.2 dated 2025-01-31
DESCRIPTION | 19 +++++++++---------- MD5 | 8 ++++---- NEWS | 7 +++++++ R/ecospat.CCV.R | 2 +- inst/doc/vignette_ecospat_package.pdf |binary 5 files changed, 21 insertions(+), 15 deletions(-)
Title: Covariance Measure Tests for Conditional Independence
Description: Covariance measure tests for conditional independence testing
against conditional covariance and nonlinear conditional mean alternatives.
The package implements versions of the generalised covariance measure test
(Shah and Peters, 2020, <doi:10.1214/19-aos1857>) and projected covariance
measure test (Lundborg et al., 2023, <doi:10.1214/24-AOS2447>). The
tram-GCM test, for censored responses, is implemented including the Cox
model and survival forests (Kook et al., 2024,
<doi:10.1080/01621459.2024.2395588>). Application examples to variable
significance testing and modality selection can be found in Kook and
Lundborg (2024, <doi:10.1093/bib/bbae475>).
Author: Lucas Kook [aut, cre] ,
Anton Rask Lundborg [ctb]
Maintainer: Lucas Kook <lucasheinrich.kook@gmail.com>
Diff between comets versions 0.1-0 dated 2024-12-06 and 0.1-1 dated 2025-01-31
DESCRIPTION | 29 +++++++----- MD5 | 16 +++--- NAMESPACE | 2 R/gcm.R | 69 +++++++++++++++++----------- R/regressions.R | 127 ++++++++++++++++++++++++++++++++++++++++++++++++++--- R/wgcm.R | 18 ++++--- man/gcm.Rd | 6 ++ man/regressions.Rd | 66 +++++++++++++++++++++++++-- man/wgcm.Rd | 11 ++++ 9 files changed, 277 insertions(+), 67 deletions(-)
Title: Model-Based Causal Feature Selection for General Response Types
Description: Extends invariant causal prediction (Peters et al., 2016,
<doi:10.1111/rssb.12167>) to generalized linear and transformation models
(Hothorn et al., 2018, <doi:10.1111/sjos.12291>).
The methodology is described in Kook et al. (2023,
<doi:10.1080/01621459.2024.2395588>).
Author: Lucas Kook [aut, cre] ,
Sorawit Saengkyongam [ctb],
Anton Rask Lundborg [ctb],
Torsten Hothorn [ctb],
Jonas Peters [ctb]
Maintainer: Lucas Kook <lucasheinrich.kook@gmail.com>
Diff between tramicp versions 0.0-2 dated 2024-03-14 and 0.1-0 dated 2025-01-31
DESCRIPTION | 12 +++--- MD5 | 8 ++-- R/tests.R | 4 +- R/tramicp.R | 102 +++++++++++++++++++++++++++++++----------------------- build/partial.rdb |binary 5 files changed, 73 insertions(+), 53 deletions(-)
Title: Accesses Weather Data from the Iowa Environment Mesonet
Description: Allows to get weather data from Automated Surface Observing
System (ASOS) stations (airports) in the whole world thanks to the
Iowa Environment Mesonet website.
Author: Maelle Salmon [aut, cre] ,
Brooke Anderson [rev] ,
CHAI Project [fnd] ,
rOpenSci [fnd] ,
Daryl Herzmann [ctb],
Jonathan Elchison [aut]
Maintainer: Maelle Salmon <maelle.salmon@yahoo.se>
Diff between riem versions 0.3.2 dated 2024-07-26 and 1.0.0 dated 2025-01-31
riem-0.3.2/riem/tests/fixtures |only riem-0.3.2/riem/tests/testthat/fixtures/measures/mesonet.agron.iastate.edu |only riem-0.3.2/riem/tests/testthat/fixtures/warnings/mesonet.agron.iastate.edu |only riem-1.0.0/riem/DESCRIPTION | 15 riem-1.0.0/riem/MD5 | 37 riem-1.0.0/riem/NEWS.md | 10 riem-1.0.0/riem/R/measures.R | 91 riem-1.0.0/riem/man/riem_measures.Rd | 33 riem-1.0.0/riem/tests/testthat/_snaps/measures.md | 50 riem-1.0.0/riem/tests/testthat/fixtures/measures-all-reports |only riem-1.0.0/riem/tests/testthat/fixtures/measures-hfmetar |only riem-1.0.0/riem/tests/testthat/fixtures/measures-hfmetar-routine |only riem-1.0.0/riem/tests/testthat/fixtures/measures-hfmetar-specials |only riem-1.0.0/riem/tests/testthat/fixtures/measures-multiple-data |only riem-1.0.0/riem/tests/testthat/fixtures/measures-routine |only riem-1.0.0/riem/tests/testthat/fixtures/measures-specials |only riem-1.0.0/riem/tests/testthat/fixtures/measures/api |only riem-1.0.0/riem/tests/testthat/fixtures/measures2 |only riem-1.0.0/riem/tests/testthat/fixtures/networks/mesonet.agron.iastate.edu/api/1/networks.json.json | 1440 +++++----- riem-1.0.0/riem/tests/testthat/fixtures/stations/mesonet.agron.iastate.edu/api/1/network/IN__ASOS.json.json | 516 ++- riem-1.0.0/riem/tests/testthat/fixtures/stations/mesonet.agron.iastate.edu/api/1/networks.json.json | 1440 +++++----- riem-1.0.0/riem/tests/testthat/fixtures/warnings/api |only riem-1.0.0/riem/tests/testthat/helper-riem.R | 3 riem-1.0.0/riem/tests/testthat/test-measures.R | 309 +- 24 files changed, 2287 insertions(+), 1657 deletions(-)
Title: Fast Symbolic Multivariate Polynomials
Description: Fast manipulation of symbolic multivariate polynomials
using the 'Map' class of the Standard Template Library. The package
uses print and coercion methods from the 'mpoly' package but
offers speed improvements. It is comparable in speed to the 'spray'
package for sparse arrays, but retains the symbolic benefits of
'mpoly'. To cite the package in publications, use Hankin 2022
<doi:10.48550/ARXIV.2210.15991>. Uses 'disordR' discipline.
Author: Robin K. S. Hankin [aut, cre]
Maintainer: Robin K. S. Hankin <hankin.robin@gmail.com>
Diff between mvp versions 1.0-14 dated 2023-03-19 and 1.0-18 dated 2025-01-31
mvp-1.0-14/mvp/inst/doc/mvp.pdf |only mvp-1.0-14/mvp/man/lose.Rd |only mvp-1.0-14/mvp/vignettes/poly.bib |only mvp-1.0-18/mvp/DESCRIPTION | 22 +++-- mvp-1.0-18/mvp/MD5 | 64 +++++++++-------- mvp-1.0-18/mvp/NAMESPACE | 6 - mvp-1.0-18/mvp/NEWS.md |only mvp-1.0-18/mvp/R/skimpy.R | 99 ++++++++++++++++++-------- mvp-1.0-18/mvp/R/skimpy_ops.R | 10 ++ mvp-1.0-18/mvp/README.md | 2 mvp-1.0-18/mvp/build/partial.rdb |binary mvp-1.0-18/mvp/build/vignette.rds |binary mvp-1.0-18/mvp/data |only mvp-1.0-18/mvp/inst/doc/mvp.R | 70 ++++++++++-------- mvp-1.0-18/mvp/inst/doc/mvp.Rmd | 116 +++++++++++++++---------------- mvp-1.0-18/mvp/inst/doc/mvp.html |only mvp-1.0-18/mvp/inst/mvp_stickermaker.R |only mvp-1.0-18/mvp/inst/symb.Rmd |only mvp-1.0-18/mvp/man/Ops.mvp.Rd | 10 ++ mvp-1.0-18/mvp/man/all.equal.Rd |only mvp-1.0-18/mvp/man/allvars.Rd | 5 + mvp-1.0-18/mvp/man/as.function.Rd | 2 mvp-1.0-18/mvp/man/coeffs.Rd | 11 ++ mvp-1.0-18/mvp/man/deriv.Rd | 31 +++++--- mvp-1.0-18/mvp/man/drop.Rd |only mvp-1.0-18/mvp/man/horner.Rd | 2 mvp-1.0-18/mvp/man/letters.Rd |only mvp-1.0-18/mvp/man/mvp.Rd | 11 ++ mvp-1.0-18/mvp/man/ooom.Rd | 2 mvp-1.0-18/mvp/man/rmvp.Rd | 22 ++++- mvp-1.0-18/mvp/man/series.Rd | 14 +-- mvp-1.0-18/mvp/man/subs.Rd | 14 +-- mvp-1.0-18/mvp/man/summary.Rd | 2 mvp-1.0-18/mvp/src/skimpy.cpp | 28 +++---- mvp-1.0-18/mvp/tests/testthat/test_aaa.R | 6 + mvp-1.0-18/mvp/tests/testthat/test_aac.R | 2 mvp-1.0-18/mvp/tests/testthat/test_aag.R | 26 ++++-- mvp-1.0-18/mvp/vignettes/mvp.Rmd | 116 +++++++++++++++---------------- mvp-1.0-18/mvp/vignettes/mvp.bib |only 39 files changed, 407 insertions(+), 286 deletions(-)
Title: 'GeoNetwork' API R Interface
Description: Provides an R interface to the 'GeoNetwork' API (<https://geonetwork-opensource.org/#api>) allowing to upload and publish metadata in a 'GeoNetwork' web-application and expose it to OGC CSW.
Author: Emmanuel Blondel [aut, cre]
Maintainer: Emmanuel Blondel <emmanuel.blondel1@gmail.com>
Diff between geonapi versions 0.7-2 dated 2024-03-21 and 0.8 dated 2025-01-31
DESCRIPTION | 12 +++--- MD5 | 47 ++++++++++++------------- NEWS.md | 12 ++++-- R/GNAbstractManager.R | 4 +- R/GNLegacyAPIManager.R | 26 +++++++++----- R/GNManager.R | 4 +- R/GNOpenAPIManager.R | 30 ++++++++++------ R/GNPriv.R | 8 ++-- R/GNPrivConfiguration.R | 6 +-- R/GNRESTRequest.R | 4 +- R/GNUtils.R | 4 +- R/GNVersion.R | 4 +- R/geonapi.R | 3 - README.md | 6 +-- man/GNAbstractManager.Rd | 4 +- man/GNLegacyAPIManager.Rd | 14 +++---- man/GNManager.Rd | 4 +- man/GNOpenAPIManager.Rd | 22 +++++------ man/GNPriv.Rd |only man/GNPrivConfiguration.Rd | 74 ++-------------------------------------- man/GNRESTRequest.Rd | 4 +- man/GNUtils.Rd | 4 +- man/GNVersion.Rd | 4 +- man/geonapi.Rd | 9 ++++ tests/testthat/test_GNManager.R | 2 - 25 files changed, 138 insertions(+), 173 deletions(-)
Title: Vaccine Extension Package for ADaM in 'R' Asset Library
Description: Programming vaccine specific Clinical Data Interchange
Standards Consortium (CDISC) compliant Analysis Data Model (ADaM)
datasets in 'R'. Flat model is followed as per
Center for Biologics Evaluation and Research (CBER) guidelines for
creating vaccine specific domains. ADaM datasets are a mandatory part
of any New Drug or Biologics License Application submitted to the
United States Food and Drug Administration (FDA). Analysis derivations
are implemented in accordance with the "Analysis Data Model
Implementation Guide" (CDISC Analysis Data Model Team (2021),
<https://www.cdisc.org/standards/foundational/adam/adamig-v1-3-release-package>).
The package is an extension package of the 'admiral' package.
Author: Sukalpo Saha [aut, cre],
Arjun Rubalingam [aut],
Ben Straub [aut],
Vikram S [aut],
Dhivya Kanagaraj [aut],
Federico Baratin [aut],
Yamini Purna Bollu [aut],
Ilse Augustyns [aut],
Kalyani Bodicherla [aut],
Hilde Delanghe [aut],
Lee Armishaw [aut],
Nee [...truncated...]
Maintainer: Sukalpo Saha <sukalpo.saha@pfizer.com>
Diff between admiralvaccine versions 0.3.0 dated 2024-08-29 and 0.4.0 dated 2025-01-31
DESCRIPTION | 9 MD5 | 142 NAMESPACE | 352 - NEWS.md | 148 R/admiralvaccine.R | 70 R/data.R | 78 R/derive_diam_to_sev_records.R | 404 +- R/derive_fever_records.R | 266 - R/derive_var_aval_adis.R | 240 - R/derive_vars_crit.R | 307 - R/derive_vars_event_flag.R | 342 - R/derive_vars_max_flag.R | 328 - R/derive_vars_merged_vaccine.R | 234 - R/derive_vars_params.R | 276 - R/derive_vars_vaxdt.R | 242 - R/global.R | 228 - R/post_process_reacto.R | 104 README.md | 220 - build/vignette.rds |binary inst/WORDLIST | 152 inst/doc/adce.R | 344 - inst/doc/adce.Rmd | 498 +- inst/doc/adce.html | 2810 +++++++------- inst/doc/adface.R | 708 +-- inst/doc/adface.Rmd | 1172 ++--- inst/doc/adface.html | 4542 +++++++++++------------ inst/doc/adis.R | 876 ++-- inst/doc/adis.Rmd | 1232 +++--- inst/doc/adis.html | 4271 ++++++++++----------- inst/doc/admiralvaccine.R | 78 inst/doc/admiralvaccine.Rmd | 204 - inst/doc/admiralvaccine.html | 836 ++-- inst/doc/adsl.R | 290 - inst/doc/adsl.Rmd | 602 +-- inst/doc/adsl.html | 1586 ++++---- inst/templates/ad_adce.R | 326 - inst/templates/ad_adface.R | 582 +- inst/templates/ad_adis.R | 742 +-- inst/templates/ad_adsl.R | 358 - man/admiralvaccine-package.Rd | 124 man/admiralvaccine_adce.Rd | 52 man/admiralvaccine_adface.Rd | 52 man/admiralvaccine_adis.Rd | 52 man/admiralvaccine_adsl.Rd | 52 man/derive_diam_to_sev_records.Rd | 296 - man/derive_fever_records.Rd | 158 man/derive_var_aval_adis.Rd | 204 - man/derive_vars_crit.Rd | 214 - man/derive_vars_event_flag.Rd | 234 - man/derive_vars_max_flag.Rd | 170 man/derive_vars_merged_vaccine.Rd | 182 man/derive_vars_params.Rd | 198 - man/derive_vars_vaxdt.Rd | 168 man/max_flag.Rd | 104 man/post_process_reacto.Rd | 104 man/roxygen/meta.R | 28 tests/testthat.R | 8 tests/testthat/test-derive_diam_to_sev_records.R | 784 +-- tests/testthat/test-derive_fever_records.R | 174 tests/testthat/test-derive_var_aval_adis.R | 756 +-- tests/testthat/test-derive_vars_crit.R | 441 +- tests/testthat/test-derive_vars_event_flag.R | 452 +- tests/testthat/test-derive_vars_max_flag.R | 326 - tests/testthat/test-derive_vars_merged_vaccine.R | 198 - tests/testthat/test-derive_vars_params.R | 406 +- tests/testthat/test-derive_vars_vaxdt.R | 224 - tests/testthat/test-post_process_reacto.R | 96 vignettes/adce.Rmd | 498 +- vignettes/adface.Rmd | 1172 ++--- vignettes/adis.Rmd | 1232 +++--- vignettes/admiralvaccine.Rmd | 204 - vignettes/adsl.Rmd | 602 +-- 72 files changed, 18109 insertions(+), 18055 deletions(-)
More information about admiralvaccine at CRAN
Permanent link
Title: Create Overlapping Stacked Plots
Description: Easily create overlapping grammar of graphics plots for scientific data visualization.
This style of plotting is particularly common in climatology and oceanography research communities.
Author: Sebastian Kopf [aut, cre, cph]
,
Tristan Caro [aut] ,
Jamie McFarlin [aut] ,
Jon Raberg [aut]
Maintainer: Sebastian Kopf <sebastian.kopf@colorado.edu>
Diff between ggstackplot versions 0.4 dated 2025-01-14 and 0.4.1 dated 2025-01-31
ggstackplot-0.4.1/ggstackplot/DESCRIPTION | 13 ggstackplot-0.4.1/ggstackplot/MD5 | 42 +-- ggstackplot-0.4.1/ggstackplot/NEWS.md | 8 ggstackplot-0.4.1/ggstackplot/R/ggstackplot.R | 33 +- ggstackplot-0.4.1/ggstackplot/R/helpers.R | 22 + ggstackplot-0.4.1/ggstackplot/README.md | 137 ++++++++-- ggstackplot-0.4.1/ggstackplot/build/vignette.rds |binary ggstackplot-0.4.1/ggstackplot/inst/doc/ggstackplot.R |only ggstackplot-0.4.1/ggstackplot/inst/doc/ggstackplot.Rmd |only ggstackplot-0.4.1/ggstackplot/inst/doc/ggstackplot.html |only ggstackplot-0.4.1/ggstackplot/man/figures/README-geodata-horizontal-1.png |only ggstackplot-0.4.1/ggstackplot/man/figures/README-geodata-horizontal-2-1.png |only ggstackplot-0.4.1/ggstackplot/man/ggstackplot-package.Rd | 11 ggstackplot-0.4.1/ggstackplot/man/ggstackplot.Rd | 9 ggstackplot-0.4.1/ggstackplot/tests/testthat/Rplots.pdf |only ggstackplot-0.4.1/ggstackplot/tests/testthat/_snaps/ggstackplot/horizontally-stacked-plot.svg | 64 ++-- ggstackplot-0.4.1/ggstackplot/tests/testthat/_snaps/ggstackplot/hstack-w-axis-defs-and-labs-in-template.svg | 44 +-- ggstackplot-0.4.1/ggstackplot/tests/testthat/_snaps/ggstackplot/hstack-w-axis-defs-in-template.svg | 44 +-- ggstackplot-0.4.1/ggstackplot/tests/testthat/_snaps/ggstackplot/vstack-w-axis-defs-in-template.svg | 54 +-- ggstackplot-0.4.1/ggstackplot/tests/testthat/test-ggstackplot.R | 2 ggstackplot-0.4.1/ggstackplot/vignettes/ggstackplot.Rmd |only ggstackplot-0.4/ggstackplot/inst/doc/features.R |only ggstackplot-0.4/ggstackplot/inst/doc/features.Rmd |only ggstackplot-0.4/ggstackplot/inst/doc/features.html |only ggstackplot-0.4/ggstackplot/man/figures/README-example-1.png |only ggstackplot-0.4/ggstackplot/man/figures/README-example2-1.png |only ggstackplot-0.4/ggstackplot/vignettes/features.Rmd |only ggstackplot-0.4/ggstackplot/vignettes/unused |only 28 files changed, 300 insertions(+), 183 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-12-16 0.0.9
Title: Analysis of Bivariate Survival Data Based on Copulas
Description: Simulating bivariate survival data from copula models.
Estimation of the association parameter in copula models.
Two different ways to estimate the association parameter in copula models are implemented.
A goodness-of-fit test for a given copula model is implemented.
See Emura, Lin and Wang (2010) <doi:10.1016/j.csda.2010.03.013> for details.
Author: Takeshi Emura [aut, cre]
Maintainer: Takeshi Emura <takeshiemura@gmail.com>
Diff between Copula.surv versions 1.7 dated 2024-10-26 and 1.8 dated 2025-01-31
DESCRIPTION | 8 ++++---- MD5 | 4 +++- R/Weib.reg.Frank.R |only man/Weib.reg.Frank.Rd |only 4 files changed, 7 insertions(+), 5 deletions(-)