Title: Embedded JavaScript and WebAssembly Engine for R
Description: An R interface to V8 <https://v8.dev>: Google's open source JavaScript
and WebAssembly engine. This package can be compiled either with V8 or NodeJS
when built as a shared library.
Author: Jeroen Ooms [aut, cre] ,
George Stagg [ctb] ,
Jan Marvin Garbuszus [ctb]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>
Diff between V8 versions 8.0.1 dated 2025-10-10 and 8.1.0 dated 2026-04-12
DESCRIPTION | 6 +++--- LICENSE | 2 +- MD5 | 22 +++++++++++----------- NEWS | 3 +++ build/partial.rdb |binary build/vignette.rds |binary configure | 17 +++++------------ inst/doc/npm.html | 6 +++--- inst/doc/v8_intro.html | 20 ++++++++++++-------- src/Makevars.in | 2 +- src/bindings.cpp | 4 ++-- tools/winlibs.R | 6 ++++-- 12 files changed, 45 insertions(+), 43 deletions(-)
Title: Estimation and Diagnostics for Many-Facet Measurement Models
Description: Fits many-facet measurement models and returns diagnostics,
reporting helpers, and reproducible analysis bundles using a native R
implementation. Supports arbitrary facet counts, rating-scale and
partial-credit parameterizations ('Andrich' (1978)
<doi:10.1007/BF02293814>; 'Masters' (1982)
<doi:10.1007/BF02296272>), marginal maximum likelihood estimation with
Gauss-Hermite quadrature and direct optimization of the marginal
log-likelihood, joint maximum likelihood estimation, plus tools for
anchor review, interaction screening, linking workflows, and
publication-oriented summaries.
Author: Ryuya Komuro [aut, cre]
Maintainer: Ryuya Komuro <ryuya.komuro.c4@tohoku.ac.jp>
Diff between mfrmr versions 0.1.4 dated 2026-03-30 and 0.1.5 dated 2026-04-12
DESCRIPTION | 24 MD5 | 328 NAMESPACE | 39 NEWS.md | 50 R/api-advanced.R | 2903 +++++ R/api-bias-collection.R | 10 R/api-dashboards.R | 5 R/api-estimation.R | 740 + R/api-export-bundles.R | 3550 ++++++ R/api-methods.R | 1899 +++ R/api-plotting-fit-family.R | 226 R/api-plotting.R | 586 + R/api-prediction.R | 810 + R/api-reference-benchmark.R | 763 + R/api-reporting-checklist.R | 639 + R/api-reports.R | 3323 ++++++ R/api-simulation-spec.R | 804 + R/api-simulation.R | 9421 +++++++++++++++++- R/api-tables.R | 562 + R/cpp11.R |only R/facets_mode_api.R | 23 R/facets_mode_methods.R | 8 R/help_compatibility_layer.R | 154 R/help_gpcm_scope.R |only R/help_linking_and_dff.R | 19 R/help_reporting_and_apa.R | 96 R/help_reports_and_tables.R | 62 R/help_visual_diagnostics.R | 315 R/help_workflow_methods.R | 277 R/mfrm_core.R | 2976 ++++- R/mfrmr-package.R | 328 R/reporting.R | 599 + R/utils-method-labels.R |only README.md | 481 build/vignette.rds |binary inst/doc/mfrmr-linking-and-dff.R | 204 inst/doc/mfrmr-linking-and-dff.html | 1158 +- inst/doc/mfrmr-mml-and-marginal-fit.R |only inst/doc/mfrmr-mml-and-marginal-fit.Rmd |only inst/doc/mfrmr-mml-and-marginal-fit.html |only inst/doc/mfrmr-reporting-and-apa.R | 184 inst/doc/mfrmr-reporting-and-apa.html | 1312 +- inst/doc/mfrmr-visual-diagnostics.R | 208 inst/doc/mfrmr-visual-diagnostics.Rmd | 64 inst/doc/mfrmr-visual-diagnostics.html | 1166 +- inst/doc/mfrmr-workflow.R | 428 inst/doc/mfrmr-workflow.Rmd | 110 inst/doc/mfrmr-workflow.html | 2203 ++-- inst/references/CODE_READING_GUIDE.md | 199 inst/references/FACETS_manual_mapping.md | 28 man/analyze_dff.Rd | 12 man/analyze_residual_pca.Rd | 2 man/apa_table.Rd | 11 man/audit_conquest_overlap.Rd |only man/audit_mfrm_anchors.Rd | 2 man/bias_interaction_report.Rd | 2 man/build_apa_outputs.Rd | 33 man/build_conquest_overlap_bundle.Rd |only man/build_linking_review.Rd |only man/build_mfrm_manifest.Rd | 11 man/build_mfrm_replay_script.Rd | 18 man/build_mfrm_sim_spec.Rd | 118 man/build_misfit_casebook.Rd |only man/build_summary_table_bundle.Rd |only man/build_visual_summaries.Rd | 30 man/build_weighting_audit.Rd |only man/category_curves_report.Rd | 4 man/category_structure_report.Rd | 7 man/compare_mfrm.Rd | 15 man/compatibility_alias_table.Rd |only man/compute_information.Rd | 58 man/data_quality_report.Rd | 2 man/describe_mfrm_data.Rd | 25 man/diagnose_mfrm.Rd | 54 man/displacement_table.Rd | 2 man/estimate_all_bias.Rd | 10 man/estimate_bias.Rd | 2 man/estimation_iteration_report.Rd | 2 man/evaluate_mfrm_design.Rd | 67 man/evaluate_mfrm_diagnostic_screening.Rd |only man/evaluate_mfrm_signal_detection.Rd | 61 man/export_mfrm_bundle.Rd | 49 man/export_summary_appendix.Rd |only man/extract_mfrm_sim_spec.Rd | 21 man/facet_quality_dashboard.Rd | 3 man/facet_statistics_report.Rd | 2 man/facets_chisq_table.Rd | 2 man/facets_output_file_bundle.Rd | 2 man/facets_parity_report.Rd | 8 man/fair_average_table.Rd | 11 man/fit_mfrm.Rd | 307 man/gpcm_capability_matrix.Rd |only man/interrater_agreement_table.Rd | 4 man/measurable_summary_table.Rd | 2 man/mfrm_threshold_profiles.Rd | 3 man/mfrmr-package.Rd | 340 man/mfrmr_compatibility_layer.Rd | 32 man/mfrmr_linking_and_dff.Rd | 17 man/mfrmr_reporting_and_apa.Rd | 96 man/mfrmr_reports_and_tables.Rd | 62 man/mfrmr_visual_diagnostics.Rd | 143 man/mfrmr_workflow_methods.Rd | 284 man/normalize_conquest_overlap_files.Rd |only man/normalize_conquest_overlap_tables.Rd |only man/plot.mfrm_bundle.Rd | 6 man/plot.mfrm_design_evaluation.Rd | 32 man/plot.mfrm_facets_run.Rd | 4 man/plot.mfrm_fit.Rd | 26 man/plot.mfrm_future_branch_active_branch.Rd |only man/plot.mfrm_signal_detection.Rd | 38 man/plot.mfrm_summary_table_bundle.Rd |only man/plot_facet_quality_dashboard.Rd | 2 man/plot_fair_average.Rd | 8 man/plot_information.Rd | 24 man/plot_marginal_fit.Rd |only man/plot_marginal_pairwise.Rd |only man/plot_qc_dashboard.Rd | 5 man/predict_mfrm_population.Rd | 57 man/predict_mfrm_units.Rd | 104 man/rating_scale_table.Rd | 12 man/recommend_mfrm_design.Rd | 29 man/reference_case_benchmark.Rd | 65 man/reporting_checklist.Rd | 49 man/run_mfrm_facets.Rd | 14 man/run_qc_pipeline.Rd | 4 man/sample_mfrm_plausible_values.Rd | 66 man/simulate_mfrm_data.Rd | 60 man/specifications_report.Rd | 2 man/subset_connectivity_report.Rd | 4 man/summary.mfrm_bias.Rd | 5 man/summary.mfrm_bundle.Rd | 14 man/summary.mfrm_data_description.Rd | 15 man/summary.mfrm_design_evaluation.Rd | 30 man/summary.mfrm_diagnostics.Rd | 25 man/summary.mfrm_facets_run.Rd | 4 man/summary.mfrm_fit.Rd | 44 man/summary.mfrm_future_branch_active_branch.Rd |only man/summary.mfrm_linking_review.Rd |only man/summary.mfrm_misfit_casebook.Rd |only man/summary.mfrm_plausible_values.Rd | 6 man/summary.mfrm_population_prediction.Rd | 27 man/summary.mfrm_reporting_checklist.Rd |only man/summary.mfrm_signal_detection.Rd | 24 man/summary.mfrm_summary_table_bundle.Rd |only man/summary.mfrm_unit_prediction.Rd | 2 man/summary.mfrm_weighting_audit.Rd |only man/unexpected_after_bias_table.Rd | 2 man/unexpected_response_table.Rd | 2 man/visual_reporting_template.Rd |only src |only tests/testthat.R | 7 tests/testthat/test-anchor-equating.R | 110 tests/testthat/test-api-coverage-gaps.R | 22 tests/testthat/test-compatibility-aliases.R |only tests/testthat/test-core-workflow.R | 38 tests/testthat/test-data-processing.R | 309 tests/testthat/test-diagnostic-screening-validation.R |only tests/testthat/test-draw-coverage.R | 34 tests/testthat/test-edge-cases.R | 4 tests/testthat/test-error-handling.R | 17 tests/testthat/test-estimation-core.R | 828 + tests/testthat/test-export-bundles.R | 2475 ++++ tests/testthat/test-facets-mode-api.R | 4 tests/testthat/test-facets-parity-report.R | 4 tests/testthat/test-gpcm-capability-matrix.R |only tests/testthat/test-information-module.R | 64 tests/testthat/test-marginal-fit-diagnostics.R |only tests/testthat/test-marginal-fit-plots.R |only tests/testthat/test-misfit-casebook.R |only tests/testthat/test-mml-cpp11-backend.R |only tests/testthat/test-namespace-contract.R | 42 tests/testthat/test-output-stability.R | 173 tests/testthat/test-parameter-recovery.R | 287 tests/testthat/test-prediction.R | 418 tests/testthat/test-reference-benchmark.R | 264 tests/testthat/test-report-functions.R | 3 tests/testthat/test-reporting-checklist.R | 133 tests/testthat/test-reporting-coverage.R | 113 tests/testthat/test-simulation-design.R | 3179 ++++++ tests/testthat/test-summary-table-bundle.R |only tests/testthat/test-visual-reporting-template.R |only tests/testthat/test-weighting-audit.R |only vignettes/mfrmr-mml-and-marginal-fit.Rmd |only vignettes/mfrmr-visual-diagnostics.Rmd | 64 vignettes/mfrmr-workflow.Rmd | 110 185 files changed, 45572 insertions(+), 5161 deletions(-)
Title: Plots for Compositional Data
Description: Provides a collection of easy-to-use functions for creating
visualizations of compositional data using 'ggplot2'. Includes support
for common plotting techniques in compositional data analysis.
Author: Marc Comas-Cufi [aut, cre]
Maintainer: Marc Comas-Cufi <mcomas@imae.udg.edu>
Diff between coda.plot versions 0.2.1 dated 2026-03-06 and 0.2.2 dated 2026-04-12
DESCRIPTION | 8 MD5 | 21 - NAMESPACE | 7 NEWS | 18 R/balance_dendrogram.R | 25 - R/ternary_diagram.R | 854 +++++++++++++++++++++++++++++++++++----------- R/zzz.R | 2 man/add_ternary_grid.Rd |only man/add_ternary_path.Rd |only man/add_ternary_pc.Rd |only man/add_ternary_points.Rd |only man/ternary_coords.Rd |only man/ternary_diagram.Rd | 34 - man/ternary_frame.Rd |only man/ternary_plot.Rd |only 15 files changed, 733 insertions(+), 236 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-03-27 1.1.0
2023-06-07 1.0.1
2022-12-01 0.5.1
2022-11-29 0.5.0
2022-03-27 0.4.2
2022-03-25 0.4.1
2021-03-23 0.3.4
2020-10-14 0.3.2
2020-08-27 0.3.1
2020-05-28 0.3.0
2020-03-04 0.1.3
Title: Send Email Using R
Description: Package contains a simple SMTP client with minimal dependencies which
provides a portable solution for sending email, including file attachments and inline html reports,
from within R. SMTP Authentication and SSL/STARTTLS is implemented using curl.
Author: Olaf Mersmann [aut, cre] ,
Quinn Weber [ctb],
Marius Barth [ctb] ,
Are Edvardsen [ctb] ,
Alexander Bartel [ctb]
Maintainer: Olaf Mersmann <olafm@p-value.net>
Diff between sendmailR versions 1.4-0 dated 2023-01-12 and 1.4-1 dated 2026-04-12
DESCRIPTION | 17 + MD5 | 16 - R/mime_part.R | 14 + R/options.R | 2 R/sendmailR.r | 26 +- build/vignette.rds |binary inst/doc/sending-html-reports.html | 328 ++++++++++++++++++------------------- man/mime_part.character.Rd | 5 man/sendmail_options.Rd | 2 9 files changed, 213 insertions(+), 197 deletions(-)
Title: Search Algorithms and Loss Functions for Bayesian Clustering
Description: The SALSO algorithm is an efficient randomized greedy search method to find a point estimate for a random partition based on a loss function and posterior Monte Carlo samples. The algorithm is implemented for many loss functions, including the Binder loss and a generalization of the variation of information loss, both of which allow for unequal weights on the two types of clustering mistakes. Efficient implementations are also provided for Monte Carlo estimation of the posterior expected loss of a given clustering estimate. See Dahl, Johnson, Müller (2022) <doi:10.1080/10618600.2022.2069779>.
Author: David B. Dahl [aut, cre] ,
Devin J. Johnson [aut] ,
Peter Mueller [aut],
Andres Felipe Barrientos [aut],
Garritt Page [aut],
David Dunson [aut],
Authors of the dependency Rust crates [ctb]
Maintainer: David B. Dahl <dahl@stat.byu.edu>
Diff between salso versions 0.3.69 dated 2026-03-08 and 0.3.77 dated 2026-04-12
salso-0.3.69/salso/src/abort_shim.c |only salso-0.3.69/salso/src/shim.c |only salso-0.3.77/salso/DESCRIPTION | 10 salso-0.3.77/salso/LICENSE | 2 salso-0.3.77/salso/MD5 | 46 +- salso-0.3.77/salso/NEWS | 6 salso-0.3.77/salso/build/partial.rdb |binary salso-0.3.77/salso/inst/AUTHORS | 37 + salso-0.3.77/salso/src/Makevars.win.in | 12 salso-0.3.77/salso/src/r_init_shim.c |only salso-0.3.77/salso/src/rust/Cargo.lock | 382 +++++++++++++++++--- salso-0.3.77/salso/src/rust/Cargo.toml | 18 salso-0.3.77/salso/src/rust/build.rs | 12 salso-0.3.77/salso/src/rust/rbindings/Cargo.lock | 2 salso-0.3.77/salso/src/rust/rbindings/Cargo.toml | 5 salso-0.3.77/salso/src/rust/rbindings/src/lib.rs | 225 +++++------ salso-0.3.77/salso/src/rust/roxido/Cargo.lock | 6 salso-0.3.77/salso/src/rust/roxido/Cargo.toml | 5 salso-0.3.77/salso/src/rust/roxido/src/lib.rs | 130 +++--- salso-0.3.77/salso/src/rust/roxido_macro/Cargo.lock | 2 salso-0.3.77/salso/src/rust/roxido_macro/Cargo.toml | 5 salso-0.3.77/salso/src/rust/roxido_macro/src/lib.rs | 4 salso-0.3.77/salso/src/rust/src/lib.rs | 2 salso-0.3.77/salso/src/rust/vendor.tar.xz |binary salso-0.3.77/salso/src/shims.c |only salso-0.3.77/salso/tools/configure.R | 182 +++++++-- 26 files changed, 728 insertions(+), 365 deletions(-)
Title: Project Environments
Description: A dependency management toolkit for R. Using 'renv', you can create
and manage project-local R libraries, save the state of these libraries to
a 'lockfile', and later restore your library as required. Together, these
tools can help make your projects more isolated, portable, and reproducible.
Author: Kevin Ushey [aut, cre] ,
Hadley Wickham [aut] ,
Posit Software, PBC [cph, fnd]
Maintainer: Kevin Ushey <kevin@rstudio.com>
Diff between renv versions 1.2.0 dated 2026-03-25 and 1.2.1 dated 2026-04-12
renv-1.2.0/renv/inst/repos/src/contrib/renv_1.2.0.tar.gz |only renv-1.2.1/renv/DESCRIPTION | 8 renv-1.2.1/renv/MD5 | 97 +++---- renv-1.2.1/renv/NEWS.md | 72 +++++ renv-1.2.1/renv/R/available-packages.R | 22 + renv-1.2.1/renv/R/cache.R | 2 renv-1.2.1/renv/R/checkout.R | 29 +- renv-1.2.1/renv/R/cli.R | 2 renv-1.2.1/renv/R/description.R | 5 renv-1.2.1/renv/R/equip-macos.R | 2 renv-1.2.1/renv/R/graph.R | 103 ++++++-- renv-1.2.1/renv/R/id.R | 2 renv-1.2.1/renv/R/infrastructure.R | 6 renv-1.2.1/renv/R/install.R | 10 renv-1.2.1/renv/R/json-write.R | 5 renv-1.2.1/renv/R/library.R | 2 renv-1.2.1/renv/R/lockfile-diff.R | 1 renv-1.2.1/renv/R/lockfile-write.R | 4 renv-1.2.1/renv/R/paths.R | 5 renv-1.2.1/renv/R/pip.R | 4 renv-1.2.1/renv/R/r.R | 3 renv-1.2.1/renv/R/records.R | 25 +- renv-1.2.1/renv/R/remotes.R | 8 renv-1.2.1/renv/R/repos.R | 4 renv-1.2.1/renv/R/restore.R | 64 ++++- renv-1.2.1/renv/R/retrieve.R | 9 renv-1.2.1/renv/R/settings.R | 17 + renv-1.2.1/renv/R/snapshot.R | 18 + renv-1.2.1/renv/R/socket.R | 13 - renv-1.2.1/renv/R/update.R | 1 renv-1.2.1/renv/R/use.R | 105 ++++++++ renv-1.2.1/renv/R/utils.R | 40 ++- renv-1.2.1/renv/inst/repos/src/contrib/PACKAGES | 6 renv-1.2.1/renv/inst/repos/src/contrib/PACKAGES.gz |binary renv-1.2.1/renv/inst/repos/src/contrib/PACKAGES.rds |binary renv-1.2.1/renv/inst/repos/src/contrib/renv_1.2.1.tar.gz |only renv-1.2.1/renv/man/settings.Rd | 9 renv-1.2.1/renv/tests/testthat/_snaps/init.md |only renv-1.2.1/renv/tests/testthat/_snaps/install.md | 38 +++ renv-1.2.1/renv/tests/testthat/test-available-packages.R | 4 renv-1.2.1/renv/tests/testthat/test-checkout.R | 25 ++ renv-1.2.1/renv/tests/testthat/test-defer.R | 46 +++ renv-1.2.1/renv/tests/testthat/test-graph.R | 184 +++++++++++++++ renv-1.2.1/renv/tests/testthat/test-init.R | 6 renv-1.2.1/renv/tests/testthat/test-install.R | 18 + renv-1.2.1/renv/tests/testthat/test-lockfile.R | 20 + renv-1.2.1/renv/tests/testthat/test-paths.R | 34 ++ renv-1.2.1/renv/tests/testthat/test-records.R | 40 +++ renv-1.2.1/renv/tests/testthat/test-restore.R | 114 +++++++++ renv-1.2.1/renv/tests/testthat/test-retrieve.R | 15 + renv-1.2.1/renv/tests/testthat/test-use.R | 65 +++++ 51 files changed, 1177 insertions(+), 135 deletions(-)
Title: Mixed-Effects Models Enhancing Functions
Description: Special functions that enhance other mixed effect model packages by creating overlayed, reduced rank, and reduced model matrices together with multiple data sets to practice the use of these models. For more details see Covarrubias-Pazaran (2016) <doi:10.1371/journal.pone.0156744>.
Author: Giovanny Covarrubias-Pazaran [aut, cre]
Maintainer: Giovanny Covarrubias-Pazaran <cova_ruber@live.com.mx>
Diff between enhancer versions 1.1.0 dated 2025-11-17 and 1.1.1 dated 2026-04-12
DESCRIPTION | 10 +++++----- MD5 | 4 ++-- man/redmm.Rd | 6 ++++++ 3 files changed, 13 insertions(+), 7 deletions(-)
Title: Multi-Format Archive and Compression Support
Description: Bindings to 'libarchive' <http://www.libarchive.org> the
Multi-format archive and compression library. Offers R connections and
direct extraction for many archive formats including 'tar', 'ZIP',
'7-zip', 'RAR', 'CAB' and compression formats including 'gzip',
'bzip2', 'compress', 'lzma' and 'xz'.
Author: Jim Hester [aut] ,
Gabor Csardi [aut, cre],
Ondrej Holy [cph] ,
RStudio [cph, fnd]
Maintainer: Gabor Csardi <csardi.gabor@gmail.com>
Diff between archive versions 1.1.12.1 dated 2025-12-24 and 1.1.13 dated 2026-04-12
DESCRIPTION | 9 ++-- MD5 | 30 ++++++++-------- NEWS.md | 4 ++ src/Makevars.in | 2 - src/cpp11/include/cpp11/R.hpp | 30 +++++++++++++++- src/cpp11/include/cpp11/altrep.hpp | 42 +--------------------- src/cpp11/include/cpp11/data_frame.hpp | 58 ++++++++++++++----------------- src/cpp11/include/cpp11/declarations.hpp | 11 ++--- src/cpp11/include/cpp11/environment.hpp | 14 ------- src/cpp11/include/cpp11/function.hpp | 21 +++++++---- src/cpp11/include/cpp11/list.hpp | 8 ++-- src/cpp11/include/cpp11/named_arg.hpp | 2 - src/cpp11/include/cpp11/protect.hpp | 25 +++---------- src/cpp11/include/cpp11/r_vector.hpp | 17 +++------ src/cpp11/include/cpp11/sexp.hpp | 5 +- src/cpp11/include/fmt/format.h | 4 +- 16 files changed, 125 insertions(+), 157 deletions(-)
Title: Augmented Inverse Probability Weighting
Description: The 'AIPW' package implements the augmented inverse probability weighting, a doubly robust estimator, for average causal effect estimation with user-defined stacked machine learning algorithms. To cite the 'AIPW' package, please use: "Yongqi Zhong, Edward H. Kennedy, Lisa M. Bodnar, Ashley I. Naimi (2021). AIPW: An R Package for Augmented Inverse Probability Weighted Estimation of Average Causal Effects. American Journal of Epidemiology. <doi:10.1093/aje/kwab207>". Visit: <https://yqzhong7.github.io/AIPW/> for more information.
Author: Yongqi Zhong [aut, cre] ,
Ashley Naimi [aut] ,
Gabriel Conzuelo [ctb],
Edward Kennedy [ctb]
Maintainer: Yongqi Zhong <yq.zhong7@gmail.com>
Diff between AIPW versions 0.6.9.2 dated 2025-04-05 and 0.6.9.3 dated 2026-04-12
DESCRIPTION | 13 +++++++------ MD5 | 8 ++++---- NEWS.md | 14 ++++++++++---- inst/doc/AIPW.html | 9 ++++----- inst/doc/Repated_Crossfitting.html | 7 +++---- 5 files changed, 28 insertions(+), 23 deletions(-)
Title: Partial Eta-Squared for Crossed, Nested, and Mixed Linear Mixed
Models
Description: Computes partial eta-squared effect sizes for fixed effects in
linear mixed models fitted with the 'lme4' package. Supports crossed,
nested, and mixed (crossed-and-nested) random effects structures with any
number of grouping factors. Mixed designs handle cases where grouping
factors are simultaneously crossed with some variables and nested within
others (e.g., photos nested within models, but both crossed with
participants). Random slope variances are translated to the outcome scale
using a variance decomposition approach, correctly accounting for predictor
scaling and interaction terms. Both general and operative effect sizes are
provided. Methods are based on Correll, Mellinger, McClelland, and Judd
(2020) <doi:10.1016/j.tics.2019.12.009>, Correll, Mellinger, and Pedersen
(2022) <doi:10.3758/s13428-021-01687-2>, and Rights and Sterba (2019)
<doi:10.1037/met0000184>.
Author: Brandon Cohen [aut, cre] ,
Joshua Correll [aut, ths]
Maintainer: Brandon Cohen <brandon.cohen-1@colorado.edu>
Diff between pecanr versions 0.1.2 dated 2026-03-17 and 0.2.0 dated 2026-04-11
DESCRIPTION | 28 + MD5 | 16 - NEWS.md | 34 ++ R/eta2p.R | 774 +++++++++++++++++++++++++++++++++++++------------- README.md | 32 +- inst/WORDLIST | 1 man/batch_eta2p.Rd | 48 ++- man/eta2p.Rd | 175 ++++++++--- man/pecanr-package.Rd | 4 9 files changed, 820 insertions(+), 292 deletions(-)
Title: Goodness of Fit Tests Based on Empirical Distribution Functions
Description: Routines that allow the user to run goodness of fit tests based on empirical distribution functions for formal model evaluation in a general likelihood model. In addition, functions are provided to test if a sample follows Normal or Gamma distributions, validate the normality assumptions in a linear model, and examine the appropriateness of a Gamma distribution in generalized linear models with various link functions. Michael Arthur Stephens (1976) <http://www.jstor.org/stable/2958206>.
Author: Richard Lockhart [aut],
Payman Nickchi [aut, cre]
Maintainer: Payman Nickchi <payman.nickchi@gmail.com>
Diff between gofedf versions 1.0.0 dated 2025-05-29 and 1.1.0 dated 2026-04-11
DESCRIPTION | 8 - MD5 | 36 +++---- R/testExponential.R | 95 +++++++++++++++++--- R/testGLMGamma.R | 151 ++++++++++++++++++++++++------- R/testGamma.R | 137 +++++++++++++++++++++++++--- R/testLMNormal.R | 127 +++++++++++++++++++++++--- R/testNormal.R | 102 +++++++++++++++++++-- R/testYourModel.R | 199 ++++++++++++++++++++++++++++++++++++------ R/utils_gof.R | 162 +++++++++++++++++++++++++++++++--- README.md | 103 ++++++++++----------- build/vignette.rds |binary inst/doc/gofedf-vignette.R | 6 - inst/doc/gofedf-vignette.html | 21 ++-- man/testExponential.Rd | 26 ++++- man/testGLMGamma.Rd | 30 +++++- man/testGamma.Rd | 32 ++++++ man/testLMNormal.Rd | 25 ++++- man/testNormal.Rd | 32 ++++++ man/testYourModel.Rd | 29 +++++- 19 files changed, 1085 insertions(+), 236 deletions(-)
Title: 'a la Carte' on Text (ConText) Embedding Regression
Description: A fast, flexible and transparent framework to estimate context-specific word and short document embeddings using the 'a la carte'
embeddings approach developed by Khodak et al. (2018) <doi:10.48550/arXiv.1805.05388> and evaluate hypotheses about covariate effects on embeddings using
the regression framework developed by Rodriguez et al. (2021)<doi:10.1017/S0003055422001228>. New version of the package applies a new estimator to measure the distance between word embeddings as described in Green et al. (2025) <doi:10.1017/pan.2024.22>.
Author: Pedro L. Rodriguez [aut, cph] ,
Arthur Spirling [aut] ,
Brandon Stewart [aut] ,
Christopher Barrie [ctb] ,
Sofia Avila [cre, aut]
Maintainer: Sofia Avila <sofiaavila@princeton.edu>
Diff between conText versions 3.0.0 dated 2025-09-03 and 3.0.1 dated 2026-04-11
DESCRIPTION | 8 +- MD5 | 14 +-- R/conText.R | 25 ++++-- build/partial.rdb |binary build/vignette.rds |binary inst/doc/quickstart.Rmd | 14 ++- inst/doc/quickstart.html | 185 ++++++++++++++++++----------------------------- vignettes/quickstart.Rmd | 14 ++- 8 files changed, 115 insertions(+), 145 deletions(-)
Title: Leakage-Safe Modeling and Auditing for Genomic and Clinical Data
Description: Prevents and detects information leakage in biomedical machine learning.
Provides leakage-resistant split policies (subject-grouped, batch-blocked, study leave-out, time-ordered),
guarded preprocessing (train-only imputation, normalization, filtering, feature selection),
cross-validated fitting with common learners, permutation-gap auditing, batch and fold association tests,
and duplicate detection.
Author: Selcuk Korkmaz [aut, cre]
Maintainer: Selcuk Korkmaz <selcukorkmaz@gmail.com>
Diff between bioLeak versions 0.3.5 dated 2026-03-26 and 0.3.6 dated 2026-04-11
DESCRIPTION | 6 - MD5 | 26 ++-- R/audit.R | 55 ++++------ R/ci_delta.R | 4 R/delta_lsi.R | 12 +- R/guards.R | 2 R/permute_labels.R | 14 +- R/simulate_suite.R | 1 R/time_series_blocks.R | 1 R/tune_resample.R | 1 R/utils_metrics.R | 3 R/utils_se.R | 2 build/vignette.rds |binary inst/doc/bioLeak-intro.html | 238 +++++++++++++++++++++----------------------- 14 files changed, 186 insertions(+), 179 deletions(-)
Title: Access 'Federal Reserve Economic Data'
Description: Provides clean, tidy access to economic data from the 'Federal
Reserve Economic Data' ('FRED') API <https://fred.stlouisfed.org/docs/api/fred/>.
'FRED' is maintained by the 'Federal Reserve Bank of St. Louis' and contains over
800,000 time series from 118 sources covering GDP, employment, inflation,
interest rates, trade, and more. Dedicated functions fetch series observations,
search for series, browse categories, releases, and tags, and retrieve series
metadata. Multiple series can be fetched in a single call, in long or wide
format. Server-side unit transformations (percent change, log, etc.) and
frequency aggregation are supported, with readable transform aliases such as
'yoy_pct' and 'log_diff'. Real-time and vintage helpers (built on 'ALFRED')
return a series as it appeared on a given date, the first-release version,
every revision, or a panel of selected vintages. Data is cached locally for
subsequent calls. This product uses the 'FRED' API but is not endorsed or
certified [...truncated...]
Author: Charles Coverdale [aut, cre]
Maintainer: Charles Coverdale <charlesfcoverdale@gmail.com>
Diff between fred versions 0.1.2 dated 2026-03-19 and 0.2.0 dated 2026-04-11
DESCRIPTION | 19 +-- MD5 | 40 ++++-- NAMESPACE | 6 NEWS.md | 32 +++++ R/auth.R | 4 R/cache.R | 79 ++++++++++++ R/class.R |only R/format.R |only R/releases.R | 4 R/series.R | 252 ++++++++++++++++++++++++++++------------- R/vintages.R |only inst/WORDLIST |only man/clear_cache.Rd | 1 man/fred-package.Rd | 2 man/fred_all_vintages.Rd |only man/fred_as_of.Rd |only man/fred_cache_info.Rd |only man/fred_first_release.Rd |only man/fred_get_key.Rd | 1 man/fred_real_time_panel.Rd |only man/fred_request.Rd | 1 man/fred_series.Rd | 53 +++++--- man/fred_set_key.Rd | 5 man/print.fred_tbl.Rd |only tests/testthat/test-cache.R | 26 ++++ tests/testthat/test-format.R |only tests/testthat/test-vintages.R |only 27 files changed, 397 insertions(+), 128 deletions(-)
Title: Convenient Access to NYC Open Data API Endpoints
Description: Provides a unified set of helper functions to access datasets
from the NYC Open Data platform <https://opendata.cityofnewyork.us/>.
Functions return results as tidy tibbles and support optional filtering,
sorting, and row limits via the Socrata API. The package includes endpoints
for 311 service requests, DOB job applications, juvenile justice metrics,
school safety, environmental data, event permitting, and additional citywide datasets.
Author: Christian Martinez [aut, cre] ,
Crystal Adote [ctb] ,
Jonah Dratfield [ctb] ,
Joyce Escatel-Flores [ctb] ,
Rob Hutto [ctb] ,
Isley Jean-Pierre [ctb] ,
Shannon Joyce [ctb] ,
Laura Rose-Werner [ctb] ,
Emma Tupone [ctb] ,
Xinru Wang [ctb]
Maintainer: Christian Martinez <c.martinez0@outlook.com>
Diff between nycOpenData versions 0.1.6 dated 2026-02-14 and 0.2.1 dated 2026-04-11
nycOpenData-0.1.6/nycOpenData/R/nyc_311.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_311_2010_2019.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_borough_community_report.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_borough_population.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_cause_of_death.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_city_record.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_civil_service_list.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_daily_attendance_2018_2019.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_detention_admissions.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_dhs_daily_report.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_dob_job_applications.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_dob_permit_issuance.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_domestic_violence_annual_report.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_dop_juvenile_cases.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_dop_juvenile_rearrest_rate.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_events_sealevel.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_film_permits.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_for_hire_vehicles.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_ha_violations.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_homeless_drop_in_centers.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_homeless_population_by_year.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_ll97_shelter_pets.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_locallaw18_payreport.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_medallion_drivers_active.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_medallion_drivers_authorized.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_motor_vehicle_collisions_crashes.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_museum_locations.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_nypd_hate_crimes.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_open_parking_camera_violations.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_period_attendance_reporting.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_permit_events_historic.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_pets_in_shelters.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_restaurant_inspection_results.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_runaway_and_homeless_youth_daily_census.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_school_discharge.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_school_discharge_report_2013_2015.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_school_discharge_report_2015_2018.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_shooting_incidents.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_slash_stab.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_street_hail_livery_active.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_tlc_new_driver_app_status.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_tree_census_2015.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_urban_park_animal_condition.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_violent_disruptive_school_incidents.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_wetlands.R |only nycOpenData-0.1.6/nycOpenData/man/nyc_311.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_311_2010_2019.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_borough_community_report.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_borough_population.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_cause_of_death.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_city_record.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_civil_service_list.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_daily_attendance_2018_2019.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_detention_admissions.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_dhs_daily_report.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_dob_job_applications.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_dob_permit_issuance.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_domestic_violence_annual_report.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_dop_juvenile_cases.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_dop_juvenile_rearrest_rate.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_events_sealevel.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_film_permits.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_for_hire_vehicles.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_ha_violations.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_homeless_drop_in_centers.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_homeless_population_by_year.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_locallaw18_payreport.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_locallaw97_shelter_pets.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_medallion_drivers_active.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_medallion_drivers_authorized.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_motor_vehicle_collisions_crashes.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_museum_locations.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_nypd_hate_crimes.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_open_parking_camera_violations.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_period_attendance_reporting.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_permit_events_historic.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_pets_in_shelters.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_restaurant_inspection_results.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_runaway_and_homeless_youth_daily_census.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_school_discharge.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_school_discharge_report_2013_2015.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_school_discharge_report_2015_2018.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_shooting_incidents.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_slash_stab.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_street_hail_livery_active.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_tlc_new_driver_app_status.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_tree_census_2015.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_urban_park_animal_condition.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_violent_disruptive_school_incidents.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_wetlands.Rd |only nycOpenData-0.1.6/nycOpenData/tests/testthat/fixtures |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_311.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_311_2010_2019.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_borough_community_report.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_borough_population.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_cause_of_death.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_city_record.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_civil_service_list.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_daily_attendance_2018_2019.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_detention_admissions.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_dhs_daily_report.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_dob_job_applications.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_dob_permit_issuance.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_domestic_violence_annual_report.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_dop_juvenile_cases.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_dop_juvenile_rearrest_rate.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_events_sealevel.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_film_permits_test.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_for_hire_vehicles.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_ha_violations.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_homeless_drop_in_centers.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_homeless_population_by_year.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_locallaw18_payreport.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_locallaw97_shelter_pets.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_medallion_drivers_active.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_medallion_drivers_authorized.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_motor_vehicle_collisions_crashes.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_museum_locations.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_nypd_hate_crimes.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_open_parking_camera_violations.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_period_attendance_reporting.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_permit_events_historic.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_pets_in_shelters.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_restaurant_inspection_results.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_runaway_and_homeless_youth_daily_census.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_school_discharge.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_school_discharge_report_2013_2015.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_school_discharge_report_2015_2018.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_shooting_incidents.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_slash_stab.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_street_hail_livery_active.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_tlc_new_driver_app_status.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_tree_census_2015.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_urban_park_animal_condition_test.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_violent_disruptive_school_incidents.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_wetlands.R |only nycOpenData-0.2.1/nycOpenData/DESCRIPTION | 13 nycOpenData-0.2.1/nycOpenData/MD5 | 277 --- nycOpenData-0.2.1/nycOpenData/NAMESPACE | 7 nycOpenData-0.2.1/nycOpenData/NEWS.md | 48 nycOpenData-0.2.1/nycOpenData/R/nyc_any_dataset.R | 22 nycOpenData-0.2.1/nycOpenData/R/nyc_list_datasets.R |only nycOpenData-0.2.1/nycOpenData/R/nyc_pull_dataset.R |only nycOpenData-0.2.1/nycOpenData/R/utils_request.R | 271 +++ nycOpenData-0.2.1/nycOpenData/README.md | 89 - nycOpenData-0.2.1/nycOpenData/inst/CITATION |only nycOpenData-0.2.1/nycOpenData/inst/doc/Analyzing-the-Local-Law-97-of-2021-Pets-in-Shelter-Report.R | 47 nycOpenData-0.2.1/nycOpenData/inst/doc/Analyzing-the-Local-Law-97-of-2021-Pets-in-Shelter-Report.Rmd | 65 nycOpenData-0.2.1/nycOpenData/inst/doc/Analyzing-the-Local-Law-97-of-2021-Pets-in-Shelter-Report.html | 829 ++++------ nycOpenData-0.2.1/nycOpenData/inst/doc/Using-Local-Law18-Pay-Report.R | 35 nycOpenData-0.2.1/nycOpenData/inst/doc/Using-Local-Law18-Pay-Report.Rmd | 47 nycOpenData-0.2.1/nycOpenData/inst/doc/Using-Local-Law18-Pay-Report.html | 229 +- nycOpenData-0.2.1/nycOpenData/inst/doc/analyzing-nyc-borough-population.R | 33 nycOpenData-0.2.1/nycOpenData/inst/doc/analyzing-nyc-borough-population.Rmd | 57 nycOpenData-0.2.1/nycOpenData/inst/doc/analyzing-nyc-borough-population.html | 243 +- nycOpenData-0.2.1/nycOpenData/inst/doc/analyzing-nyc-shooting-incidents.R | 9 nycOpenData-0.2.1/nycOpenData/inst/doc/analyzing-nyc-shooting-incidents.Rmd | 19 nycOpenData-0.2.1/nycOpenData/inst/doc/analyzing-nyc-shooting-incidents.html | 70 nycOpenData-0.2.1/nycOpenData/inst/doc/analyzing-nyc_events_sealevel.R | 32 nycOpenData-0.2.1/nycOpenData/inst/doc/analyzing-nyc_events_sealevel.Rmd | 61 nycOpenData-0.2.1/nycOpenData/inst/doc/analyzing-nyc_events_sealevel.html | 158 + nycOpenData-0.2.1/nycOpenData/inst/doc/analyzing-nyc_wetlands.R | 27 nycOpenData-0.2.1/nycOpenData/inst/doc/analyzing-nyc_wetlands.Rmd | 31 nycOpenData-0.2.1/nycOpenData/inst/doc/analyzing-nyc_wetlands.html | 119 - nycOpenData-0.2.1/nycOpenData/inst/doc/getting-started.R | 55 nycOpenData-0.2.1/nycOpenData/inst/doc/getting-started.Rmd | 127 + nycOpenData-0.2.1/nycOpenData/inst/doc/getting-started.html | 341 ++-- nycOpenData-0.2.1/nycOpenData/inst/doc/investigating-inmate-incidents.R | 45 nycOpenData-0.2.1/nycOpenData/inst/doc/investigating-inmate-incidents.Rmd | 69 nycOpenData-0.2.1/nycOpenData/inst/doc/investigating-inmate-incidents.html | 177 -- nycOpenData-0.2.1/nycOpenData/inst/doc/nyc_ha_violations.R | 31 nycOpenData-0.2.1/nycOpenData/inst/doc/nyc_ha_violations.Rmd | 50 nycOpenData-0.2.1/nycOpenData/inst/doc/nyc_ha_violations.html | 109 - nycOpenData-0.2.1/nycOpenData/man/nyc_any_dataset.Rd | 12 nycOpenData-0.2.1/nycOpenData/man/nyc_list_datasets.Rd |only nycOpenData-0.2.1/nycOpenData/man/nyc_pull_dataset.Rd |only nycOpenData-0.2.1/nycOpenData/tests/testthat/helper-vcr.R | 27 nycOpenData-0.2.1/nycOpenData/tests/testthat/test-nyc_any_dataset.R |only nycOpenData-0.2.1/nycOpenData/tests/testthat/test-nyc_catalog_and_pull_dataset.R |only nycOpenData-0.2.1/nycOpenData/tests/testthat/test-utils_request.R |only nycOpenData-0.2.1/nycOpenData/tests/testthat/test-validate.R |only nycOpenData-0.2.1/nycOpenData/vignettes/Analyzing-the-Local-Law-97-of-2021-Pets-in-Shelter-Report.Rmd | 65 nycOpenData-0.2.1/nycOpenData/vignettes/Using-Local-Law18-Pay-Report.Rmd | 47 nycOpenData-0.2.1/nycOpenData/vignettes/analyzing-nyc-borough-population.Rmd | 57 nycOpenData-0.2.1/nycOpenData/vignettes/analyzing-nyc-shooting-incidents.Rmd | 19 nycOpenData-0.2.1/nycOpenData/vignettes/analyzing-nyc_events_sealevel.Rmd | 61 nycOpenData-0.2.1/nycOpenData/vignettes/analyzing-nyc_wetlands.Rmd | 31 nycOpenData-0.2.1/nycOpenData/vignettes/getting-started.Rmd | 127 + nycOpenData-0.2.1/nycOpenData/vignettes/investigating-inmate-incidents.Rmd | 69 nycOpenData-0.2.1/nycOpenData/vignettes/nyc_ha_violations.Rmd | 50 190 files changed, 2476 insertions(+), 1931 deletions(-)
Title: Animated Glass-Style Tabs and Multi-Select Filter for 'Shiny'
Description: Tools for creating animated glassmorphism-style tab
navigation and multi-select dropdown filters in 'shiny' applications.
The package provides a tab navigation component and a searchable
multi-select widget with multiple checkbox indicator styles,
select-all controls, and customizable colour themes. The widgets are
compatible with standard 'shiny' layouts and 'bs4Dash' dashboards.
Author: George Arthur [aut, cre]
Maintainer: George Arthur <prigasgenthian48@gmail.com>
Diff between glasstabs versions 0.1.1 dated 2026-03-13 and 0.2.1 dated 2026-04-11
DESCRIPTION | 6 LICENSE | 4 MD5 | 74 +- NAMESPACE | 35 NEWS.md | 54 + R/dependencies.R | 2 R/glassSelect.R | 19 R/glass_multiselect.R | 12 R/glass_tabs.R | 211 +++++ README.md | 59 + build/vignette.rds |binary inst/WORDLIST | 8 inst/doc/cheatsheet.R |only inst/doc/cheatsheet.Rmd |only inst/doc/cheatsheet.html |only inst/doc/getting-started.html | 5 inst/doc/glassSelect.html | 5 inst/doc/multiselect.html | 5 inst/doc/tabs.Rmd | 392 +++++------ inst/doc/tabs.html | 5 inst/examples/basic/testing_js_select.R |only inst/examples/dashboard |only inst/examples/smoke-test |only inst/www/glass.css | 97 ++ inst/www/glass.js | 1139 ++++++++++++++++++++++---------- man/appendGlassTab.Rd |only man/glassMultiSelect.Rd | 182 ++--- man/glassMultiSelectValue.Rd | 90 +- man/glassSelectValue.Rd | 82 +- man/glassTabPanel.Rd | 64 - man/glassTabsServer.Rd | 70 - man/glassTabsUI.Rd | 68 - man/showGlassTab.Rd |only man/updateGlassMultiSelect.Rd | 88 +- man/updateGlassTabsUI.Rd |only man/useGlassTabs.Rd | 64 - tests/testthat.R | 24 tests/testthat/test-dependencies.R | 5 tests/testthat/test-glassselect.R | 16 tests/testthat/test-multiselect.R | 22 tests/testthat/test-tabs.R | 189 +++++ vignettes/cheatsheet.Rmd |only vignettes/tabs.Rmd | 392 +++++------ 43 files changed, 2291 insertions(+), 1197 deletions(-)
Title: Fast and Efficient Processing of PAM Data
Description: Processing Chlorophyll Fluorescence & P700 Absorbance data. Four models are provided for the regression of Pi curves, which can be compared with each other in order to select the most suitable model for the data set. Control plots ensure the successful verification of each regression. Bundled output of alpha, ETRmax, Ik etc. enables fast and reliable further processing of the data.
Author: Julien Boehm [cre, aut] ,
Philipp Schrag [aut]
Maintainer: Julien Boehm <julien.boehm@uni-rostock.de>
Diff between pam versions 2.1.0 dated 2026-04-11 and 2.1.1 dated 2026-04-11
DESCRIPTION | 6 +++--- MD5 | 6 +++--- inst/CITATION | 2 +- tests/testthat/helper-os-detection.R | 2 +- 4 files changed, 8 insertions(+), 8 deletions(-)
Title: Functional Utilities for Data Processing
Description: Covers several areas of data processing: batch-splitting, reading and writing of large
data files, data tiling, one-hot encoding and decoding of data tiles, stratified proportional
(random or probabilistic) data sampling, data normalization and thresholding, substring location
and commonalities inside strings and location and tabulation of amino acids, modifications or
associated monoisotopic masses inside modified peptides. The extractor utility implements code from
'Matrix.utils', Varrichio C (2020), <https://cran.r-project.org/package=Matrix.utils>.
Author: Dragos Bandur [aut, cre]
Maintainer: Dragos Bandur <dbandur@sympatico.ca>
Diff between akin versions 0.1.4 dated 2026-04-10 and 0.2.0 dated 2026-04-11
DESCRIPTION | 8 +-- MD5 | 48 +++++++++++----------- NEWS.md | 6 ++ R/akin-package.R | 17 +++---- R/common.R | 108 ++++++++++++++++++++++++++++++-------------------- R/findLoc.R | 4 - R/getEncodedVar.R | 37 ++++++++--------- R/modPep.R | 8 +-- R/normalizer.R | 14 ++---- R/oneHotEncoder.R | 22 +++++----- R/seqRead.R | 25 +++++------ R/stratified_sample.R | 45 ++++++++++---------- R/tileD.R | 10 ++-- R/tileHot.R | 8 +-- R/utils.R | 17 +------ man/akin-package.Rd | 17 +++---- man/common.Rd | 63 ++++++++++++++++++----------- man/getEV.Rd | 31 ++++++-------- man/locateMod.Rd | 4 - man/oneHot.Rd | 7 +-- man/score.Rd | 14 ++---- man/splitH.Rd | 13 ++---- man/stratify.Rd | 37 ++++++++--------- man/tileData.Rd | 2 man/tileHot.Rd | 4 - 25 files changed, 297 insertions(+), 272 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-12-21 0.1.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-10-21 0.0.3
2017-06-08 0.0.2
2017-04-14 0.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-05-02 1.1.6
2018-12-17 1.1.5
2018-10-17 1.1.4
2018-09-11 1.1.2
Title: Self-Similarity Test for Normality
Description: Implements the Self-Similarity Test for Normality (SSTN), a new
statistical test designed to assess whether a given sample originates from
a normal distribution. The method exploits the self-similarity property of
the normal characteristic function by iteratively transforming and comparing
standardized empirical characteristic functions. The null distribution of
the test statistic is obtained via Monte Carlo simulation. Details of the
methodology are described in Anarat and Schwender (2026),
"A test for normality based on self-similarity", <doi:10.48550/arXiv.2604.03810>.
Author: Akin Anarat [aut, cre]
Maintainer: Akin Anarat <akin.anarat@hhu.de>
Diff between sstn versions 1.0.0 dated 2025-09-16 and 1.0.1 dated 2026-04-11
DESCRIPTION | 23 +++--- MD5 | 25 ++++-- NAMESPACE | 2 NEWS.md |only R/asymptotic_calibration.R |only R/calibration_data.R |only R/compute_statistics.R |only R/sstn.R | 141 ++++++++++++++----------------------- R/sysdata.rda |only R/utils.R |only build/vignette.rds |binary inst/WORDLIST | 2 inst/doc/Introduction_to_SSTN.Rmd | 15 +-- inst/doc/Introduction_to_SSTN.html | 38 +++------ man/calibration_data.Rd |only man/sstn.Rd | 52 +++---------- vignettes/Introduction_to_SSTN.Rmd | 15 +-- 17 files changed, 126 insertions(+), 187 deletions(-)
Title: Descriptive, Reliability, and Inferential Tables for
Psychometric Scales and Demographic Data
Description: Provides functions to format and summarise already computed outputs from commonly used statistical and psychometric functions into compact, single-row tables and simple graphs, with utilities to export results to CSV, Word, and Excel formats. The package does not implement new statistical methods or estimation procedures; instead, it organises and presents results obtained from existing functions such as psych::describe(), psych::alpha(), stats::t.test(), and gtsummary::tbl_summary() to streamline reporting workflows in clinical and psychological research.
Author: Darshankumar Dharaiya [aut, cre]
Maintainer: Darshankumar Dharaiya <dharaiya.darshan@gmail.com>
Diff between scaledescr versions 0.2.3 dated 2026-03-21 and 0.2.4 dated 2026-04-11
DESCRIPTION | 8 ++-- MD5 | 16 ++++---- NAMESPACE | 15 ++++++++ NEWS.md | 10 +++++ R/make_alpha_table.R | 55 +++++++++++++++-------------- R/make_dataframe_to_output.R | 75 +++++++++++++++++++++++++++++++++------- inst/CITATION | 2 - man/make_alpha_table.Rd | 23 ++++-------- man/make_dataframe_to_output.Rd | 8 +++- 9 files changed, 145 insertions(+), 67 deletions(-)
Title: Tools for Creating Tuning Parameter Values
Description: Many models contain tuning parameters (i.e. parameters that
cannot be directly estimated from the data). These tools can be used
to define objects for creating, simulating, or validating values for
such parameters.
Author: Max Kuhn [aut],
Hannah Frick [aut, cre],
Posit Software, PBC [cph, fnd]
Maintainer: Hannah Frick <hannah@posit.co>
Diff between dials versions 1.4.2 dated 2025-09-04 and 1.4.3 dated 2026-04-11
DESCRIPTION | 8 MD5 | 96 ++++----- NAMESPACE | 14 + NEWS.md | 23 ++ R/aaa_ranges.R | 40 ++- R/aaa_unknown.R | 16 + R/aaa_values.R | 27 +- R/constructors.R | 6 R/dials-package.R | 2 R/encode_unit.R | 13 - R/finalize.R | 30 ++ R/grids.R | 155 +++++++++++++-- R/misc.R | 236 +++++++++++++++++++++-- R/param_ordinal_link.R |only R/param_schedulers.R | 2 R/param_tab_pfn.R |only R/parameters.R | 101 ++++----- R/space_filling.R | 120 +++++++++-- README.md | 2 build/vignette.rds |binary inst/doc/dials.Rmd | 2 inst/doc/dials.html | 2 man/dials-package.Rd | 2 man/finalize.Rd | 2 man/grid_regular.Rd | 6 man/grid_space_filling.Rd | 3 man/ordinal_link.Rd |only man/parameters.Rd | 18 + man/scheduler-param.Rd | 4 man/tab-pfn-param.Rd |only tests/testthat/_snaps/aaa_ranges.md | 34 +++ tests/testthat/_snaps/aaa_unknown.md | 34 +-- tests/testthat/_snaps/aaa_values.md | 99 +++++++++ tests/testthat/_snaps/constructors.md | 43 +++- tests/testthat/_snaps/encode_unit.md | 36 ++- tests/testthat/_snaps/finalize.md | 68 ++++++ tests/testthat/_snaps/grids.md | 334 ++++++++++++++++++++++++++++++++- tests/testthat/_snaps/misc.md | 208 +++++++++++++++++++- tests/testthat/_snaps/parameters.md | 40 +++ tests/testthat/_snaps/space_filling.md | 178 +++++++++++++++++ tests/testthat/test-aaa_ranges.R | 13 + tests/testthat/test-aaa_values.R | 26 ++ tests/testthat/test-constructors.R | 29 ++ tests/testthat/test-encode_unit.R | 14 + tests/testthat/test-finalize.R | 15 + tests/testthat/test-grids.R | 117 ++++++++++- tests/testthat/test-misc.R | 89 ++++++++ tests/testthat/test-parameters.R | 22 ++ tests/testthat/test-params.R | 80 +++++-- tests/testthat/test-space_filling.R | 84 ++++++++ vignettes/dials.Rmd | 2 51 files changed, 2163 insertions(+), 332 deletions(-)
Title: Access Geographic Data
Description: Functions for downloading of geographic data for use in spatial analysis and mapping. The package facilitates access to climate, crops, elevation, land use, soil, species occurrence, accessibility, administrative boundaries and other data.
Author: Robert J. Hijmans [cre, aut] ,
Marcia Barbosa [ctb] ,
Aniruddha Ghosh [ctb],
Alex Mandel [ctb]
Maintainer: Robert J. Hijmans <r.hijmans@gmail.com>
Diff between geodata versions 0.6-6 dated 2025-09-29 and 0.6-9 dated 2026-04-11
DESCRIPTION | 9 MD5 | 38 +- R/download.R | 2 R/gadm.R | 2 R/occurrence.R | 10 R/path.R | 45 ++- R/soil_afsis.R | 29 +- R/soil_grids.R | 9 R/soil_isda.R | 2 R/uri_helpers.R | 610 ++++++++++++++++++++++++------------------------ R/worldclim.R | 103 ++++++-- build/partial.rdb |binary man/cmip6.Rd | 4 man/cropland.Rd | 2 man/geodata_path.Rd | 9 man/soil_af.Rd | 10 man/soil_af_elements.Rd | 2 man/soil_af_isda.Rd | 4 man/soil_grids.Rd | 4 man/sp_occurrence.Rd | 18 - 20 files changed, 505 insertions(+), 407 deletions(-)
Title: Advanced Framework for Sap Flow Data Post-Process
Description: Provides a flexible framework for post-processing thermal
dissipation sap flow data using statistical methods and machine learning.
This framework includes anomaly correction, outlier removal, gap-filling,
trend removal, signal damping correction, and sap flux density calculation.
The functions in this package can also apply to other time series with
various artifacts.
Author: Yoshiaki Hata [aut, cre, cph]
Maintainer: Yoshiaki Hata <yoshiakihata0806@gmail.com>
Diff between fluxfixer versions 1.0.0 dated 2026-02-02 and 1.1.0 dated 2026-04-11
DESCRIPTION | 6 - MD5 | 61 +++++------ NAMESPACE | 1 NEWS.md | 34 +++++- R/calc_dtmax.R | 8 - R/remove_statistical_outlier.R | 31 ++++- R/run_fluxfixer.R | 119 +++++++++++++++++++---- R/utils.R | 117 ++++++++++++++++++++++ inst/doc/fluxfixer.Rmd | 14 +- inst/doc/fluxfixer.html | 56 ++++++---- man/calc_dtmax.Rd | 2 man/calc_dtmax_dr.Rd | 6 - man/calc_dtmax_ed.Rd | 2 man/calc_dtmax_mw.Rd | 6 - man/calc_dtmax_mw_dr.Rd | 6 - man/calc_dtmax_pd.Rd | 2 man/calc_dtmax_pd_ed.Rd | 2 man/calc_dtmax_sp.Rd | 2 man/calc_ref_stats.Rd | 4 man/calc_sw_in_toa.Rd | 2 man/check_short_attenuation.Rd | 2 man/filter_highfreq_noise.Rd | 4 man/get_interval.Rd | 2 man/interpret_qc.Rd |only man/modify_short_drift.Rd | 6 - man/remove_manually.Rd | 4 man/remove_zscore_outlier.Rd | 6 - man/run_fluxfixer.Rd | 52 ++++++++-- tests/testthat/test-remove_statistical_outlier.R | 50 ++++++--- tests/testthat/test-run_fluxfixer.R | 11 ++ tests/testthat/test-utils.R | 42 ++++++-- vignettes/fluxfixer.Rmd | 14 +- 32 files changed, 506 insertions(+), 168 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-05-24 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-08-21 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-01-29 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-08-27 0.2.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-03-30 1.0.4
2021-03-22 1.0.3
2020-04-07 1.0.2
2019-09-17 1.0.1
2019-04-04 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-09-16 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-02-21 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-09-07 0.2.1
2020-09-04 0.2.0
2020-06-09 0.1.1
2020-05-11 0.1.0
2020-05-08 0.0.2
2020-03-31 0.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-01-09 1.0.0
2024-06-13 0.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-10-11 1.4.0
2025-07-20 1.1.3
2025-07-18 1.0.5
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-10-10 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-03-12 1.0.1
2024-07-14 0.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-12-20 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-04-23 3.2.0
2023-08-22 3.1.0
2022-08-10 3.0.1
2020-10-28 3.0.0
2020-08-26 2.0.1
Title: Text Extraction, Rendering and Converting of PDF Documents
Description: Utilities based on 'libpoppler' <https://poppler.freedesktop.org> for extracting
text, fonts, attachments and metadata from a PDF file. Also supports high quality rendering
of PDF documents into PNG, JPEG, TIFF format, or into raw bitmap vectors for further
processing in R.
Author: Jeroen Ooms [aut, cre]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>
Diff between pdftools versions 3.7.0 dated 2026-01-30 and 3.8.0 dated 2026-04-11
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS | 4 ++++ src/bindings.cpp | 1 + 4 files changed, 11 insertions(+), 6 deletions(-)
Title: Database Interface and 'MySQL' Driver for R
Description: Legacy 'DBI' interface to 'MySQL' / 'MariaDB' based on old code
ported from S-PLUS. A modern 'MySQL' client written in 'C++' is available
from the 'RMariaDB' package.
Author: Jeroen Ooms [aut, cre] ,
David James [aut],
Saikat DebRoy [aut],
Hadley Wickham [aut],
Jeffrey Horner [aut],
RStudio [cph]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>
Diff between RMySQL versions 0.11.2 dated 2026-03-02 and 0.11.3 dated 2026-04-11
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS.md | 8 +++++++- src/connection.c | 6 ++++-- 4 files changed, 17 insertions(+), 9 deletions(-)
Title: Knowledge Space Theory Input/Output
Description: Knowledge space theory by Doignon and Falmagne (1999)
<doi:10.1007/978-3-642-58625-5> is a set- and order-theoretical
framework which proposes mathematical formalisms to operationalize
knowledge structures in a particular domain. The 'kstIO' package
provides basic functionalities to read and write KST data from/to
files to be used together with the 'kst', 'kstMatrix', 'pks', or
'DAKS' packages.
Author: Cord Hockemeyer [aut, cre]
Maintainer: Cord Hockemeyer <cord.hockemeyer@uni-graz.at>
Diff between kstIO versions 0.5-0 dated 2026-03-08 and 0.5-1 dated 2026-04-11
Changelog | 5 +++++ DESCRIPTION | 8 ++++---- MD5 | 28 ++++++++++++++++++---------- R/write_kbase.R | 25 ++++++++++++++----------- R/write_kfamset.R | 26 +++++++++++++++----------- R/write_kspace.R | 21 +++++++++++++-------- R/write_kstructure.R | 20 +++++++++++++------- build |only inst |only man/write_kbase.Rd | 4 +++- man/write_kfamset.Rd | 4 +++- man/write_kspace.Rd | 7 ++++++- man/write_kstructure.Rd | 7 ++++++- vignettes |only 14 files changed, 100 insertions(+), 55 deletions(-)
Title: Fast and Efficient Processing of PAM Data
Description: Processing Chlorophyll Fluorescence & P700 Absorbance data. Four models are provided for the regression of Pi curves, which can be compared with each other in order to select the most suitable model for the data set. Control plots ensure the successful verification of each regression. Bundled output of alpha, ETRmax, Ik etc. enables fast and reliable further processing of the data.
Author: Julien Boehm [cre, aut] ,
Philipp Schrag [aut]
Maintainer: Julien Boehm <julien.boehm@uni-rostock.de>
Diff between pam versions 2.0.2 dated 2026-02-23 and 2.1.0 dated 2026-04-11
DESCRIPTION | 8 +- MD5 | 54 ++++++++--------- R/eilers_peeters.R | 2 R/platt.R | 4 - R/util.R | 4 - R/validation.R | 6 - R/vollenweider.R | 12 +-- R/walsby.R | 4 - build/partial.rdb |binary inst/CITATION | 4 - man/eilers_peeters_modified.Rd | 2 man/platt_modified.Rd | 2 man/vollenweider_generate_regression_ETR_I.Rd | 4 - man/vollenweider_generate_regression_ETR_II.Rd | 4 - man/vollenweider_modified.Rd | 2 man/walsby_modified.Rd | 2 tests/testthat/helper-os-detection.R | 11 --- tests/testthat/test-eilers_peeters_etr_I.R | 2 tests/testthat/test-eilers_peeters_etr_II.R | 2 tests/testthat/test-eilers_peeters_junior_pam_etr_II.R | 2 tests/testthat/test-platt_etr_I.R | 2 tests/testthat/test-platt_etr_II.R | 2 tests/testthat/test-universal_data_etr_I.R | 8 +- tests/testthat/test-vollenweider_etr_I.R | 2 tests/testthat/test-vollenweider_etr_II.R | 2 tests/testthat/test-walsby_etr_I.R | 2 tests/testthat/test-walsby_etr_II.R | 2 tests/testthat/test-write_model_result_csv.R | 4 - 28 files changed, 73 insertions(+), 82 deletions(-)
Title: Handling and Analysing EQ-5d Data
Description: The EQ-5D is a widely-used standarized instrument for measuring Health Related Quality Of Life (HRQOL),
developed by the EuroQol group <https://euroqol.org/>. It assesses five dimensions; mobility, self-care,
usual activities, pain/discomfort, and anxiety/depression, using either a three-level (EQ-5D-3L) or five-level (EQ-5D-5L) scale.
Scores from these dimensions are commonly converted into a single utility index using country-specific value sets,
which are critical in clinical and economic evaluations of healthcare and in population health surveys.
The eq5dsuite package enables users to calculate utility index values for the EQ-5D instruments,
including crosswalk utilities using the original crosswalk developed by van Hout et al. (2012) <doi:10.1016/j.jval.2012.02.008>
(mapping EQ-5D-5L responses to EQ-5D-3L index values), or the recently developed reverse crosswalk
by van Hout et al. (2021) <doi:10.1016/j.jval.2021.03.009> (mapping EQ-5D-3L responses
to EQ-5D-5L in [...truncated...]
Author: Kim Rand [aut, cre] ,
Oliver Rivero-Arias [aut] ,
Iryna Schlackow [aut] ,
Anabel Estevez-Carrillo [aut]
Maintainer: Kim Rand <krand@mathsinhealth.com>
Diff between eq5dsuite versions 1.0.2 dated 2026-03-24 and 1.0.3 dated 2026-04-11
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ NEWS.md | 6 ++++++ R/EQ_functions.R | 2 +- R/sysdata.rda |binary inst/shiny/modules/mod_data.R | 4 ++-- man/eqvs_display.Rd | 2 +- 7 files changed, 19 insertions(+), 13 deletions(-)
Title: Semi-Automatic Grading of R and Rmd Scripts
Description: A customisable set of tools for assessing and grading
R or R-markdown scripts from students. It allows for checking correctness
of code output, runtime statistics and static code analysis. The latter
feature is made possible by representing R expressions using a tree
structure.
Author: Vik Gopal [aut],
Agrawal Naman [aut, cre],
Yuting Huang [ctb],
Samuel Seah [aut],
Viknesh Jeya Kumar [aut],
Gabriel Ang [aut],
Ruofan Liu [ctb],
National University of Singapore [cph]
Maintainer: Agrawal Naman <naman.a@nus.edu.sg>
Diff between autoharp versions 0.3.1 dated 2026-04-10 and 0.3.2 dated 2026-04-11
DESCRIPTION | 6 - MD5 | 30 ++++---- NEWS | 3 NEWS.md | 13 ++- README.md | 17 ++-- inst/doc/bg_concepts.Rmd | 4 - inst/doc/bg_concepts.html | 22 ++--- inst/doc/getting-started.R | 50 ++++--------- inst/doc/getting-started.Rmd | 100 +++++++++++++-------------- inst/doc/getting-started.html | 151 ++++++++++++++++++----------------------- inst/doc/shiny_similarity.Rmd | 6 - inst/doc/shiny_similarity.html | 40 +++++----- vignettes/bg_concepts.Rmd | 4 - vignettes/getting-started.Rmd | 100 +++++++++++++-------------- vignettes/references.bib | 2 vignettes/shiny_similarity.Rmd | 6 - 16 files changed, 262 insertions(+), 292 deletions(-)
Title: Generate Comment Boxes with Custom Alignment
Description: Provides a function to generate comment boxes framed with '#'
characters, with configurable width and text alignment (left, center,
or right). Useful for formatting scripts and improving code readability.
Author: Gregoire Muller [aut, cre]
Maintainer: Gregoire Muller <muller.gregoire@protonmail.com>
Diff between easyComment versions 2.0.0 dated 2026-04-03 and 2.1.0 dated 2026-04-11
DESCRIPTION | 13 - MD5 | 9 - R/comment_box.R | 335 +++++++++++++++++++++++--------------- README.md |only man/generate_comment_box.Rd | 132 +++++++++----- tests/testthat/test-comment_box.R | 185 +++++++++++++++++--- 6 files changed, 455 insertions(+), 219 deletions(-)
Title: Partial Profile Score Feature Selection in High-Dimensional
Generalized Linear Interaction Models
Description: This is an implementation of the partial profile score feature
selection (PPSFS) approach to generalized linear (interaction) models.
The PPSFS is highly scalable even for ultra-high-dimensional feature space.
See the paper by Xu, Luo and Chen (2022) <doi:10.4310/21-SII706>.
Author: Zengchao Xu [aut, cre],
Shan Luo [aut],
Zehua Chen [aut]
Maintainer: Zengchao Xu <zengc.xu@aliyun.com>
Diff between PPSFS versions 0.1.1 dated 2025-07-03 and 0.1.3 dated 2026-04-11
DESCRIPTION | 13 ++++++------- MD5 | 16 +++++++++------- NAMESPACE | 2 ++ NEWS.md | 13 +++++++++++++ R/PPSFS-package.R | 27 ++++++++++++++------------- R/ppsfs.R | 5 ++--- R/ppsfs.fit.R |only man/PPS-method.Rd | 5 ++--- man/PPSFS-package.Rd | 2 +- man/ppsfs.fit.Rd |only 10 files changed, 49 insertions(+), 34 deletions(-)
Title: Econometric Tools for Performance and Risk Analysis
Description: Collection of econometric functions for performance and risk
analysis. In addition to standard risk and performance metrics, this
package aims to aid practitioners and researchers in utilizing the latest
research in analysis of non-normal return streams. In general, it is most
tested on return (rather than price) data on a regular scale, but most
functions will work with irregular return data as well, and increasing
numbers of functions will work with P&L or price data where possible.
Author: Brian G. Peterson [cre, aut, cph],
Peter Carl [aut, cph],
Kris Boudt [ctb, cph],
Ross Bennett [ctb],
Joshua Ulrich [ctb],
Eric Zivot [ctb],
Dries Cornilly [ctb],
Eric Hung [ctb],
Matthieu Lestel [ctb],
Kyle Balkissoon [ctb],
Diethelm Wuertz [ctb],
An [...truncated...]
Maintainer: Brian G. Peterson <brian@braverock.com>
Diff between PerformanceAnalytics versions 2.0.8 dated 2024-12-09 and 2.1.0 dated 2026-04-11
PerformanceAnalytics-2.0.8/PerformanceAnalytics/inst/tinytest |only PerformanceAnalytics-2.0.8/PerformanceAnalytics/tests/tinytest.R |only PerformanceAnalytics-2.1.0/PerformanceAnalytics/DESCRIPTION | 43 PerformanceAnalytics-2.1.0/PerformanceAnalytics/MD5 | 577 +++++--- PerformanceAnalytics-2.1.0/PerformanceAnalytics/NAMESPACE | 9 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/ActivePremium.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/AdjustedSharpeRatio.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/AppraisalRatio.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/BernadoLedoitratio.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/BurkeRatio.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/CAPM.alpha.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/CAPM.beta.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/CAPM.epsilon.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/CAPM.jensenAlpha.R | 110 - PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/CAPM.utils.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/CDAR.alpha.R | 111 - 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Title: Derivative-Based Optimization with User-Defined Convergence
Criteria
Description: Provides a derivative-based optimization framework that allows users
to combine eight convergence criteria. Unlike standard optimization functions, this package includes a
built-in mechanism to verify the positive definiteness of the Hessian matrix
at the point of convergence. This additional check helps prevent the solver
from falsely identifying non-optimal solutions, such as saddle points, as
valid minima.
Author: Eunseong Cho [aut, cre]
Maintainer: Eunseong Cho <bene@kw.ac.kr>
This is a re-admission after prior archival of version 0.1.0 dated 2026-02-07
Diff between optimflex versions 0.1.0 dated 2026-02-07 and 0.1.6 dated 2026-04-11
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Title: The Multiplicative Multinomial Distribution
Description: Various utilities for the Multiplicative Multinomial distribution.
Author: Robin K. S. Hankin [aut, cre],
P. M. E. Altham [aut]
Maintainer: Robin K. S. Hankin <hankin.robin@gmail.com>
Diff between MM versions 1.6-8 dated 2024-05-16 and 1.7-0 dated 2026-04-11
MM-1.6-8/MM/build/MM.pdf |only MM-1.6-8/MM/build/stage23.rdb |only MM-1.7-0/MM/DESCRIPTION | 19 +++++++++++++------ MM-1.7-0/MM/MD5 | 40 +++++++++++++++++++--------------------- MM-1.7-0/MM/NAMESPACE | 1 - MM-1.7-0/MM/build/partial.rdb |binary MM-1.7-0/MM/build/vignette.rds |binary MM-1.7-0/MM/data/danaher.rda |binary MM-1.7-0/MM/data/pollen.rda |binary MM-1.7-0/MM/data/powell.rda |binary MM-1.7-0/MM/data/skellam.rda |binary MM-1.7-0/MM/data/sweets.rda |binary MM-1.7-0/MM/data/voting.rda |binary MM-1.7-0/MM/data/wilson.rda |binary MM-1.7-0/MM/inst/doc/MM.pdf |binary MM-1.7-0/MM/man/MB.Rd | 30 +++++++++++++++--------------- MM-1.7-0/MM/man/MM.Rd | 18 +++++++++--------- MM-1.7-0/MM/man/multinomial.Rd | 6 +++--- MM-1.7-0/MM/man/paras.Rd | 6 +++--- MM-1.7-0/MM/man/pollen.Rd | 4 ++-- MM-1.7-0/MM/man/suffstats.Rd | 4 ++-- MM-1.7-0/MM/man/sweets.Rd | 8 ++++---- 22 files changed, 70 insertions(+), 66 deletions(-)
Title: Calibration, Validation, and Simulation of TKTD Models
Description: Eases the use of ecotoxicological effect models. Can simulate
common toxicokinetic-toxicodynamic (TK/TD) models such as
General Unified Threshold models of Survival (GUTS) and Lemna. It can
derive effects and effect profiles (EPx) from scenarios. It supports the
use of 'tidyr' workflows employing the pipe symbol. Time-consuming
tasks can be parallelized.
Author: Nils Kehrein [aut, cre],
Dirk Nickisch [aut],
Peter Vermeiren [aut],
Torben Wittwer [ctb],
Johannes Witt [ctb],
Andre Gergs [ctb]
Maintainer: Nils Kehrein <nils.kehrein@gmail.com>
Diff between cvasi versions 1.5.0 dated 2025-09-11 and 1.5.1 dated 2026-04-11
cvasi-1.5.0/cvasi/inst/fit_log.Rmd |only cvasi-1.5.0/cvasi/inst/fit_log.html |only cvasi-1.5.1/cvasi/DESCRIPTION | 8 cvasi-1.5.1/cvasi/MD5 | 46 +-- cvasi-1.5.1/cvasi/NEWS.md | 8 cvasi-1.5.1/cvasi/R/calibrate.R | 6 cvasi-1.5.1/cvasi/R/fit_growth.R | 5 cvasi-1.5.1/cvasi/R/fit_tktd.R | 8 cvasi-1.5.1/cvasi/R/globals.R | 126 ++++---- cvasi-1.5.1/cvasi/R/model-guts.R | 4 cvasi-1.5.1/cvasi/R/set_times.R | 4 cvasi-1.5.1/cvasi/R/simulate.R | 3 cvasi-1.5.1/cvasi/build/partial.rdb |binary cvasi-1.5.1/cvasi/build/vignette.rds |binary cvasi-1.5.1/cvasi/data/schmitt2013.rda |binary cvasi-1.5.1/cvasi/inst/doc/cvasi-1-manual.R | 12 cvasi-1.5.1/cvasi/inst/doc/cvasi-1-manual.html | 1 cvasi-1.5.1/cvasi/inst/doc/cvasi-2-howto.R | 28 - cvasi-1.5.1/cvasi/inst/doc/cvasi-2-howto.html | 205 +++++++------- cvasi-1.5.1/cvasi/man/GUTS_IT.Rd | 2 cvasi-1.5.1/cvasi/man/GUTS_SD.Rd | 2 cvasi-1.5.1/cvasi/man/fit_growth.Rd | 5 cvasi-1.5.1/cvasi/man/fit_tktd.Rd | 8 cvasi-1.5.1/cvasi/tests/testthat/test-simulate_scenario.R | 18 + cvasi-1.5.1/cvasi/tests/testthat/test-solver.R | 2 25 files changed, 268 insertions(+), 233 deletions(-)
Title: Vector Helpers
Description: Defines new notions of prototype and size that are used to
provide tools for consistent and well-founded type-coercion and
size-recycling, and are in turn connected to ideas of type- and
size-stability useful for analysing function interfaces.
Author: Hadley Wickham [aut],
Lionel Henry [aut],
Davis Vaughan [aut, cre],
data.table team [cph] and
their contribution to R's order),
Posit Software, PBC [cph, fnd]
Maintainer: Davis Vaughan <davis@posit.co>
Diff between vctrs versions 0.7.2 dated 2026-03-21 and 0.7.3 dated 2026-04-11
DESCRIPTION | 7 ++++--- MD5 | 26 +++++++++++++------------- NEWS.md | 6 ++++++ build/vignette.rds |binary inst/doc/pillar.html | 47 ++++++++++++++++++++++++----------------------- inst/doc/s3-vector.html | 21 +++++++++++---------- inst/doc/stability.html | 6 +++--- inst/doc/type-size.html | 9 +++++---- src/rlang/env-binding.c | 13 +++++++++---- src/rlang/env.c | 14 ++++++-------- src/rlang/globals.c | 1 - src/rlang/globals.h | 1 - src/rlang/rlang-types.h | 2 +- src/version.c | 2 +- 14 files changed, 83 insertions(+), 72 deletions(-)
Title: Tensors and Neural Networks with 'GPU' Acceleration
Description: Provides functionality to define and train neural networks similar to
'PyTorch' by Paszke et al (2019) <doi:10.48550/arXiv.1912.01703> but written entirely in R
using the 'libtorch' library. Also supports low-level tensor operations and
'GPU' acceleration.
Author: Tomasz Kalinowski [ctb, cre],
Daniel Falbel [aut, cph],
Javier Luraschi [aut],
Dmitriy Selivanov [ctb],
Athos Damiani [ctb],
Christophe Regouby [ctb],
Krzysztof Joachimiak [ctb],
Hamada S. Badr [ctb],
Sebastian Fischer [ctb],
Maximilian Pichler [ctb] [...truncated...]
Maintainer: Tomasz Kalinowski <tomasz@posit.co>
Diff between torch versions 0.16.3 dated 2025-11-02 and 0.17.0 dated 2026-04-11
torch-0.16.3/torch/inst/po/fr/LC_MESSAGES/torch.mo |only torch-0.16.3/torch/vignettes/model.pt |only torch-0.16.3/torch/vignettes/tensor.pt |only torch-0.17.0/torch/DESCRIPTION | 14 torch-0.17.0/torch/MD5 | 122 - torch-0.17.0/torch/NAMESPACE | 9 torch-0.17.0/torch/NEWS.md | 30 torch-0.17.0/torch/R/RcppExports.R | 148 + torch-0.17.0/torch/R/conditions.R | 15 torch-0.17.0/torch/R/dtype.R | 13 torch-0.17.0/torch/R/gen-method.R | 2 torch-0.17.0/torch/R/gen-namespace-docs.R | 137 + torch-0.17.0/torch/R/gen-namespace-examples.R | 21 torch-0.17.0/torch/R/gen-namespace.R | 275 +- torch-0.17.0/torch/R/ignite.R | 6 torch-0.17.0/torch/R/install.R | 964 +++++++++- torch-0.17.0/torch/R/lantern_load.R | 31 torch-0.17.0/torch/R/operators.R | 8 torch-0.17.0/torch/R/tensor.R | 28 torch-0.17.0/torch/R/utils.R | 11 torch-0.17.0/torch/R/wrapers.R | 25 torch-0.17.0/torch/README.md | 1 torch-0.17.0/torch/build/partial.rdb |binary torch-0.17.0/torch/build/vignette.rds |binary torch-0.17.0/torch/inst/doc/installation.Rmd | 64 torch-0.17.0/torch/inst/doc/installation.html | 81 torch-0.17.0/torch/inst/include/lantern/lantern.h | 114 - torch-0.17.0/torch/inst/include/torch.h | 11 torch-0.17.0/torch/inst/po/fr/LC_MESSAGES/R-torch.mo |binary torch-0.17.0/torch/man/install_torch_sitrep.Rd |only torch-0.17.0/torch/man/torch_addmm.Rd | 4 torch-0.17.0/torch/man/torch_baddbmm.Rd | 4 torch-0.17.0/torch/man/torch_bmm.Rd | 4 torch-0.17.0/torch/man/torch_dtype.Rd | 6 torch-0.17.0/torch/man/torch_ldexp.Rd |only torch-0.17.0/torch/man/torch_mm.Rd | 4 torch-0.17.0/torch/man/torch_scaled_dot_product_attention.Rd |only torch-0.17.0/torch/man/torch_sparse_sampled_addmm.Rd |only torch-0.17.0/torch/po/R-fr.po | 283 +- torch-0.17.0/torch/po/R-torch.pot | 236 +- torch-0.17.0/torch/po/fr.po | 6 torch-0.17.0/torch/po/torch.pot | 4 torch-0.17.0/torch/src/Makevars.in | 2 torch-0.17.0/torch/src/RcppExports.cpp | 474 +++- torch-0.17.0/torch/src/autograd.cpp | 18 torch-0.17.0/torch/src/codegen.cpp | 19 torch-0.17.0/torch/src/device.cpp | 1 torch-0.17.0/torch/src/dtype.cpp | 10 torch-0.17.0/torch/src/gen-namespace.cpp | 167 + torch-0.17.0/torch/src/indexing.cpp | 13 torch-0.17.0/torch/src/lantern.cpp | 28 torch-0.17.0/torch/src/tensor.cpp | 5 torch-0.17.0/torch/src/torch_api.cpp | 4 torch-0.17.0/torch/src/trace.cpp | 11 torch-0.17.0/torch/tests/testthat/test-dtype.R | 28 torch-0.17.0/torch/tests/testthat/test-gen-namespace.R | 55 torch-0.17.0/torch/tests/testthat/test-nn.R | 26 torch-0.17.0/torch/tests/testthat/test-operators.R | 34 torch-0.17.0/torch/tests/testthat/test-tensor.R | 103 + torch-0.17.0/torch/tests/testthat/test-utils-data.R | 22 torch-0.17.0/torch/tests/testthat/tracedmodule.pt |binary torch-0.17.0/torch/tools/renamelib.R | 2 torch-0.17.0/torch/tools/torchgen/R/r.R | 2 torch-0.17.0/torch/tools/torchgen/R/utils.R | 4 torch-0.17.0/torch/tools/torchgen/inst/declaration/Declarations-2.8.0.yaml |only torch-0.17.0/torch/vignettes/installation.Rmd | 64 66 files changed, 3118 insertions(+), 655 deletions(-)
Title: Data Structures for Single Cell Data
Description: Defines S4 classes for single-cell genomic data and associated
information, such as dimensionality reduction embeddings, nearest-neighbor
graphs, and spatially-resolved coordinates. Provides data access methods and
R-native hooks to ensure the Seurat object is familiar to other R users. See
Satija R, Farrell J, Gennert D, et al (2015) <doi:10.1038/nbt.3192>,
Macosko E, Basu A, Satija R, et al (2015) <doi:10.1016/j.cell.2015.05.002>,
and Stuart T, Butler A, et al (2019) <doi:10.1016/j.cell.2019.05.031>,
Hao Y, Hao S, et al (2021) <doi:10.1016/j.cell.2021.04.048> and
Hao Y, et al (2023) <doi:10.1101/2022.02.24.481684> for
more details.
Author: Paul Hoffman [aut] ,
Rahul Satija [aut, cre] ,
David Collins [aut] ,
Yuhan Hao [aut] ,
Austin Hartman [aut] ,
Gesmira Molla [aut] ,
Andrew Butler [aut] ,
Tim Stuart [aut] ,
Madeline Kowalski [ctb] ,
Saket Choudhary [ctb] ,
Skylar Li [ctb],
Longda Jia [...truncated...]
Maintainer: Rahul Satija <seurat@nygenome.org>
Diff between SeuratObject versions 5.3.0 dated 2025-12-12 and 5.4.0 dated 2026-04-11
DESCRIPTION | 6 +- MD5 | 42 +++++++-------- NAMESPACE | 2 NEWS.md | 13 ++++ R/assay5.R | 46 ++++++++-------- R/fov.R | 59 ++++++++++++++++++++- R/generics.R | 26 +++++++++ R/seurat.R | 89 ++++++++++++++++++++++++-------- R/utils.R | 110 +++++++++++++++++++++++++++++++++------- build/SeuratObject.pdf |binary build/partial.rdb |binary build/stage23.rdb |binary man/Crop.Rd | 3 - man/DefaultDimReduc.Rd | 34 +++++++++++- man/FetchData.Rd | 3 + man/SaveSeuratRds.Rd | 6 +- man/dot-GetConsensusFeatures.Rd | 12 ++-- man/dot-GetVariableFeatures.Rd | 2 man/sub-LogMap-method.Rd | 2 man/subset.Seurat.Rd | 23 ++++++++ man/v5-assay-summaries.Rd | 2 tests/testthat/test_objects.R | 31 +++++++++++ 22 files changed, 402 insertions(+), 109 deletions(-)
Title: R Commander
Description: A platform-independent basic-statistics GUI (graphical user interface) for R, based on the tcltk package.
Author: John Fox [aut],
Milan Bouchet-Valat [aut],
Manuel Munoz-Marquez [aut, cre],
Liviu Andronic [ctb],
Michael Ash [ctb],
Theophilius Boye [ctb],
Stefano Calza [ctb],
Andy Chang [ctb],
Vilmantas Gegzna [ctb],
Philippe Grosjean [ctb],
Richard Heiberger [ct [...truncated...]
Maintainer: Manuel Munoz-Marquez <manuel.munoz@uca.es>
Diff between Rcmdr versions 2.9-5 dated 2024-10-24 and 2.12.2 dated 2026-04-11
Rcmdr-2.12.2/Rcmdr/DESCRIPTION | 22 Rcmdr-2.12.2/Rcmdr/MD5 | 119 Rcmdr-2.12.2/Rcmdr/NAMESPACE | 460 Rcmdr-2.12.2/Rcmdr/NEWS | 16 Rcmdr-2.12.2/Rcmdr/R/Rcmdr-internal.R |only Rcmdr-2.12.2/Rcmdr/R/Rcmdr-package.R |only Rcmdr-2.12.2/Rcmdr/R/Rcmdr.Utilities.R |only Rcmdr-2.12.2/Rcmdr/R/Rexcel-specific.R | 1 Rcmdr-2.12.2/Rcmdr/R/cluster.R | 29 Rcmdr-2.12.2/Rcmdr/R/commander.R | 13 Rcmdr-2.12.2/Rcmdr/R/data-menu.R | 106 Rcmdr-2.12.2/Rcmdr/R/file-menu.R | 115 Rcmdr-2.12.2/Rcmdr/R/globals.R | 4 Rcmdr-2.12.2/Rcmdr/R/graphs-menu.R | 36 Rcmdr-2.12.2/Rcmdr/R/statistics-dimensional-menu.R | 21 Rcmdr-2.12.2/Rcmdr/R/statistics-means-menu.R | 34 Rcmdr-2.12.2/Rcmdr/R/statistics-models-menu.R | 77 Rcmdr-2.12.2/Rcmdr/R/statistics-summaries-menu.R | 15 Rcmdr-2.12.2/Rcmdr/R/statistics-tables-menu.R | 81 Rcmdr-2.12.2/Rcmdr/R/utilities.R | 490 Rcmdr-2.12.2/Rcmdr/build/vignette.rds |binary Rcmdr-2.12.2/Rcmdr/inst/doc/Commander-ru.Rnw |only Rcmdr-2.12.2/Rcmdr/inst/doc/Commander-ru.pdf |binary Rcmdr-2.12.2/Rcmdr/inst/doc/Empezando-con-Rcmdr-es.R | 2 Rcmdr-2.12.2/Rcmdr/inst/doc/Empezando-con-Rcmdr-es.Rnw | 13 Rcmdr-2.12.2/Rcmdr/inst/doc/Empezando-con-Rcmdr-es.pdf |binary Rcmdr-2.12.2/Rcmdr/inst/doc/Getting-Started-with-the-Rcmdr-ja.Rnw |only Rcmdr-2.12.2/Rcmdr/inst/doc/Getting-Started-with-the-Rcmdr-ja.pdf |binary Rcmdr-2.12.2/Rcmdr/inst/doc/Getting-Started-with-the-Rcmdr-ko.Rnw |only Rcmdr-2.12.2/Rcmdr/inst/doc/Getting-Started-with-the-Rcmdr-ko.pdf |binary Rcmdr-2.12.2/Rcmdr/inst/doc/Getting-Started-with-the-Rcmdr.Rnw | 8 Rcmdr-2.12.2/Rcmdr/inst/doc/Getting-Started-with-the-Rcmdr.pdf |binary Rcmdr-2.12.2/Rcmdr/inst/etc/Rcmdr-menus.txt | 2 Rcmdr-2.12.2/Rcmdr/inst/etc/language.csv |only Rcmdr-2.12.2/Rcmdr/inst/po/ca/LC_MESSAGES/R-Rcmdr.mo |binary Rcmdr-2.12.2/Rcmdr/inst/po/es/LC_MESSAGES/R-Rcmdr.mo |binary Rcmdr-2.12.2/Rcmdr/man/AuxiliarySoftware.Rd | 63 Rcmdr-2.12.2/Rcmdr/man/CFA.Rd | 58 Rcmdr-2.12.2/Rcmdr/man/Commander-es.Rd | 8 Rcmdr-2.12.2/Rcmdr/man/Commander.Rd | 2 Rcmdr-2.12.2/Rcmdr/man/Compute.Rd | 51 Rcmdr-2.12.2/Rcmdr/man/Plugins.Rd | 49 Rcmdr-2.12.2/Rcmdr/man/Rcmdr-package.Rd | 59 Rcmdr-2.12.2/Rcmdr/man/Rcmdr.Utilities.Rd | 824 Rcmdr-2.12.2/Rcmdr/man/RcmdrPager.Rd | 49 Rcmdr-2.12.2/Rcmdr/man/RecodeDialog.Rd | 95 Rcmdr-2.12.2/Rcmdr/man/RepeatedMeasuresDialogs.Rd | 90 Rcmdr-2.12.2/Rcmdr/man/ReshapeDatasetDialogs.Rd | 38 Rcmdr-2.12.2/Rcmdr/man/Scatter3DDialog.Rd | 97 Rcmdr-2.12.2/Rcmdr/man/ScriptEditor.Rd |only Rcmdr-2.12.2/Rcmdr/man/editDataset.Rd | 171 Rcmdr-2.12.2/Rcmdr/man/generalizedLinearModel.Rd | 70 Rcmdr-2.12.2/Rcmdr/man/hierarchicalCluster.Rd | 76 Rcmdr-2.12.2/Rcmdr/man/linearModel.Rd | 64 Rcmdr-2.12.2/Rcmdr/man/reexports.Rd |only Rcmdr-2.12.2/Rcmdr/man/saveOptions.Rd | 87 Rcmdr-2.12.2/Rcmdr/po/R-Rcmdr.pot | 50 Rcmdr-2.12.2/Rcmdr/po/R-ca.po |11588 +++++----- Rcmdr-2.12.2/Rcmdr/po/R-es.po | 163 Rcmdr-2.12.2/Rcmdr/vignettes/Commander-ru.Rnw |only Rcmdr-2.12.2/Rcmdr/vignettes/Commander-ru.asis.pdf |only Rcmdr-2.12.2/Rcmdr/vignettes/Empezando-con-Rcmdr-es.Rnw | 13 Rcmdr-2.12.2/Rcmdr/vignettes/Getting-Started-with-the-Rcmdr-ja.Rnw |only Rcmdr-2.12.2/Rcmdr/vignettes/Getting-Started-with-the-Rcmdr-ja.asis.pdf |only Rcmdr-2.12.2/Rcmdr/vignettes/Getting-Started-with-the-Rcmdr-ko.Rnw |only Rcmdr-2.12.2/Rcmdr/vignettes/Getting-Started-with-the-Rcmdr-ko.asis.pdf |only Rcmdr-2.12.2/Rcmdr/vignettes/Getting-Started-with-the-Rcmdr.Rnw | 8 Rcmdr-2.9-5/Rcmdr/man/Rcmdr-internal.Rd |only Rcmdr-2.9-5/Rcmdr/man/RcmdrEditor.Rd |only 69 files changed, 9085 insertions(+), 6352 deletions(-)
Title: Cubature over Polygonal Domains
Description: Numerical integration of continuously differentiable
functions f(x,y) over simple closed polygonal domains.
The following cubature methods are implemented:
product Gauss cubature (Sommariva and Vianello, 2007,
<doi:10.1007/s10543-007-0131-2>),
the simple two-dimensional midpoint rule
(wrapping 'spatstat.geom' functions), and
adaptive cubature for radially symmetric functions via line
integrate() along the polygon boundary (Meyer and Held, 2014,
<doi:10.1214/14-AOAS743>, Supplement B).
For simple integration along the axes, the 'cubature' package
is more appropriate.
Author: Sebastian Meyer [aut, cre, trl] ,
Leonhard Held [ths],
Michael Hoehle [ths]
Maintainer: Sebastian Meyer <seb.meyer@fau.de>
Diff between polyCub versions 0.9.2 dated 2025-02-11 and 0.9.3 dated 2026-04-11
polyCub-0.9.2/polyCub/man/dotprod.Rd |only polyCub-0.9.2/polyCub/man/isClosed.Rd |only polyCub-0.9.2/polyCub/man/isScalar.Rd |only polyCub-0.9.2/polyCub/man/plot_polyregion.Rd |only polyCub-0.9.2/polyCub/man/polygauss.Rd |only polyCub-0.9.2/polyCub/man/vecnorm.Rd |only polyCub-0.9.3/polyCub/DESCRIPTION | 29 +- polyCub-0.9.3/polyCub/MD5 | 61 ++--- polyCub-0.9.3/polyCub/NAMESPACE | 4 polyCub-0.9.3/polyCub/NEWS.md | 9 polyCub-0.9.3/polyCub/R/circleCub.R | 7 polyCub-0.9.3/polyCub/R/coerce-sp-methods.R | 2 polyCub-0.9.3/polyCub/R/plotpolyf.R | 4 polyCub-0.9.3/polyCub/R/polyCub.SV.R | 32 +- polyCub-0.9.3/polyCub/R/polyCub.exact.Gauss.R | 10 polyCub-0.9.3/polyCub/R/polyCub.iso.R | 15 - polyCub-0.9.3/polyCub/R/polyCub.midpoint.R | 6 polyCub-0.9.3/polyCub/R/tools.R | 47 +--- polyCub-0.9.3/polyCub/R/zzz.R | 31 -- polyCub-0.9.3/polyCub/build/partial.rdb |binary polyCub-0.9.3/polyCub/build/vignette.rds |binary polyCub-0.9.3/polyCub/inst/CITATION | 3 polyCub-0.9.3/polyCub/inst/REFERENCES.R |only polyCub-0.9.3/polyCub/inst/doc/polyCub.R | 12 - polyCub-0.9.3/polyCub/inst/doc/polyCub.Rmd | 97 ++++---- polyCub-0.9.3/polyCub/inst/doc/polyCub.html | 249 +++++++++-------------- polyCub-0.9.3/polyCub/man/circleCub.Gauss.Rd | 6 polyCub-0.9.3/polyCub/man/coerce-gpc-methods.Rd | 2 polyCub-0.9.3/polyCub/man/polyCub-package.Rd | 31 -- polyCub-0.9.3/polyCub/man/polyCub.SV.Rd | 29 +- polyCub-0.9.3/polyCub/man/polyCub.exact.Gauss.Rd | 6 polyCub-0.9.3/polyCub/man/polyCub.iso.Rd | 16 - polyCub-0.9.3/polyCub/man/polyCub.midpoint.Rd | 7 polyCub-0.9.3/polyCub/man/sfg2gpc.Rd | 2 polyCub-0.9.3/polyCub/vignettes/polyCub.Rmd | 97 ++++---- 35 files changed, 347 insertions(+), 467 deletions(-)
Title: Network Meta-Analysis using Frequentist Methods
Description: A comprehensive set of functions providing frequentist methods for network meta-analysis (Balduzzi et al., 2023) <doi:10.18637/jss.v106.i02> and supporting Schwarzer et al. (2015) <doi:10.1007/978-3-319-21416-0>, Chapter 8 "Network Meta-Analysis":
- frequentist network meta-analysis following Rücker (2012) <doi:10.1002/jrsm.1058>;
- additive network meta-analysis for combinations of treatments (Rücker et al., 2020) <doi:10.1002/bimj.201800167>;
- network meta-analysis of binary data using the Mantel-Haenszel or non-central hypergeometric distribution method (Efthimiou et al., 2019) <doi:10.1002/sim.8158>, or penalised logistic regression (Evrenoglou et al., 2022) <doi:10.1002/sim.9562>;
- rankograms and ranking of treatments by the Surface under the cumulative ranking curve (SUCRA) (Salanti et al., 2013) <doi:10.1016/j.jclinepi.2010.03.016>;
- ranking of treatments using P-scores (frequentist analogue of SUCRAs without resampling) according to [...truncated...]
Author: Gerta Ruecker [aut] ,
Ulrike Krahn [aut],
Jochem Koenig [aut] ,
Orestis Efthimiou [aut] ,
Annabel Davies [aut] ,
Theodoros Papakonstantinou [aut] ,
Theodoros Evrenoglou [ctb] ,
Krzysztof Ciomek [ctb] ,
Nana-Adjoa Kwarteng [ctb] ,
Guido Schwarzer [aut, [...truncated...]
Maintainer: Guido Schwarzer <guido.schwarzer@uniklinik-freiburg.de>
Diff between netmeta versions 3.3-1 dated 2026-01-28 and 3.4-0 dated 2026-04-11
DESCRIPTION | 10 - MD5 | 250 +++++++++++++++++------------------ NAMESPACE | 3 NEWS.md | 20 ++ R/Baker2009.R | 8 - R/Dogliotti2014.R | 8 - R/Dong2013.R | 8 - R/Franchini2012.R | 8 - R/Gurusamy2011.R | 8 - R/Linde2015.R | 8 - R/Linde2016.R | 3 R/Senn2013.R | 5 R/Stowe2010.R | 6 R/Woods2010.R | 9 - R/as.data.frame.netconnection.R | 6 R/as.data.frame.netmeta.R | 8 - R/crossnma2netmeta.R | 8 - R/decomp.design.R | 19 +- R/forest.netcomplex.R | 21 +- R/forest.netsplit.R | 2 R/funnel.netmeta.R | 25 ++- R/hasse.R | 14 - R/hatmatrix.R | 20 +- R/heatplot.R | 19 +- R/heatplot.netmeta.R | 19 +- R/invmat.R | 8 - R/merge.pairwise.R | 15 +- R/metabias.netmeta.R | 19 +- R/netbind.R | 25 +-- R/netcomb.R | 49 +++--- R/netcomparison.R | 44 +++--- R/netcomplex.R | 39 ++--- R/netconnection.R | 22 +-- R/netcontrib.R | 12 - R/netdistance.R | 16 +- R/netgraph.discomb.R | 5 R/netgraph.netcomb.R | 15 +- R/netgraph.netconnection.R | 4 R/netgraph.netimpact.R | 6 R/netgraph.netmeta.R | 64 ++++---- R/netheat.R | 30 ++-- R/netimpact.R | 16 +- R/netleague.R | 50 +++---- R/netmatrix.R | 10 - R/netmeasures.R | 10 - R/netmeta-package.R | 2 R/netmeta.R | 84 ++++++----- R/netmetabin.R | 92 +++++++++++- R/netmetareg-internal.R | 264 ++++++++++++++++++++++++++++++++++++- R/netmetareg.R | 151 ++++++++++++++++----- R/netpairwise.R | 16 +- R/netposet.R | 32 ++-- R/netrank.R | 32 ++-- R/netsplit.R | 38 ++--- R/nettable.R | 22 +-- R/plot.netposet.R | 2 R/plot.netrank.R | 2 R/plot.rankogram.R | 24 +-- R/print.netmeta.R | 2 R/radial.netmeta.R | 23 +-- R/rankogram.R | 2 R/rankogram.default.R | 15 -- R/rankogram.netmeta.R | 18 +- R/summary.netmetareg.R | 8 - R/treats.R | 20 +- build/vignette.rds |binary inst/doc/netmeta-workflow.pdf |binary inst/doc/netmeta.pdf |binary man/Baker2009.Rd | 8 - man/Dogliotti2014.Rd | 8 - man/Dong2013.Rd | 8 - man/Franchini2012.Rd | 8 - man/Gurusamy2011.Rd | 8 - man/Linde2015.Rd | 8 - man/Linde2016.Rd | 3 man/Senn2013.Rd | 5 man/Stowe2010.Rd | 6 man/Woods2010.Rd | 9 - man/as.data.frame.netconnection.Rd | 6 man/as.data.frame.netmeta.Rd | 8 - man/crossnma2netmeta.Rd | 8 - man/decomp.design.Rd | 19 +- man/forest.netcomplex.Rd | 21 +- man/forest.netsplit.Rd | 2 man/funnel.netmeta.Rd | 25 ++- man/hasse.netposet.Rd | 14 - man/hatmatrix.Rd | 20 +- man/heatplot.Rd | 19 +- man/heatplot.netmeta.Rd | 19 +- man/invmat.Rd | 8 - man/merge.pairwise.Rd | 15 +- man/metabias.netmeta.Rd | 19 +- man/netbind.Rd | 25 +-- man/netcomb.Rd | 49 +++--- man/netcomparison.Rd | 44 +++--- man/netcomplex.Rd | 39 ++--- man/netconnection.Rd | 22 +-- man/netcontrib.Rd | 12 - man/netdistance.Rd | 16 +- man/netgraph.discomb.Rd | 5 man/netgraph.netcomb.Rd | 15 +- man/netgraph.netconnection.Rd | 4 man/netgraph.netimpact.Rd | 6 man/netgraph.netmeta.Rd | 60 ++++---- man/netheat.Rd | 30 ++-- man/netimpact.Rd | 16 +- man/netleague.Rd | 50 +++---- man/netmatrix.Rd | 10 - man/netmeasures.Rd | 10 - man/netmeta.Rd | 84 ++++++----- man/netmetabin.Rd | 6 man/netmetareg.Rd | 10 - man/netpairwise.Rd | 16 +- man/netposet.Rd | 32 ++-- man/netrank.Rd | 32 ++-- man/netsplit.Rd | 38 ++--- man/nettable.Rd | 22 +-- man/plot.netposet.Rd | 2 man/plot.netrank.Rd | 2 man/plot.rankogram.Rd | 18 +- man/radial.netmeta.Rd | 23 +-- man/rankogram.Rd | 2 man/rankogram.default.Rd | 15 -- man/rankogram.netmeta.Rd | 18 +- man/summary.netmetareg.Rd | 8 - man/treats.Rd | 20 +- 126 files changed, 1698 insertions(+), 1160 deletions(-)
Title: Read and Write 'Parquet' Files
Description: Self-sufficient reader and writer for flat 'Parquet' files.
Can read most 'Parquet' data types. Can write many 'R' data types,
including factors and temporal types. See docs for limitations.
Author: Gabor Csardi [aut, cre],
Hannes Muehleisen [aut, cph] ,
Google Inc. [cph],
Apache Software Foundation [cph],
Posit Software, PBC [cph],
RAD Game Tools [cph],
Valve Software [cph],
Tenacious Software LLC [cph],
Facebook, Inc. [cph]
Maintainer: Gabor Csardi <csardi.gabor@gmail.com>
Diff between nanoparquet versions 0.4.3 dated 2025-12-17 and 0.5.0 dated 2026-04-11
DESCRIPTION | 8 MD5 | 255 +- NEWS.md | 56 R/infer-parquet-schema.R | 47 R/parquet-column-types.R | 108 + R/parquet-metadata.R | 13 R/read-parquet.R | 79 R/schema.R | 245 +- R/utils.R | 5 R/write-parquet.R | 36 configure | 16 inst/WORDLIST | 4 man/infer_parquet_schema.Rd | 2 man/nanoparquet-package.Rd | 1 man/nanoparquet-types.Rd | 23 man/parquet_options.Rd | 2 man/parquet_schema.Rd | 12 man/read_parquet_info.Rd | 3 man/read_parquet_metadata.Rd | 4 man/read_parquet_page.Rd | 2 man/read_parquet_schema.Rd | 4 man/rle_decode_int.Rd | 4 man/rle_encode_int.Rd | 4 man/write_parquet.Rd | 4 src/Makevars.in | 31 src/RParquetOutFile.cpp | 450 +++- src/RParquetOutFile.h | 44 src/RParquetReader.cpp | 161 + src/RParquetReader.h | 18 src/arrow-schema.cpp | 15 src/cpp-utils.cpp | 104 - src/dictionary-encoding.cpp | 141 + src/encodings.cpp | 2 src/lib/ParquetOutFile.cpp | 303 ++- src/lib/ParquetOutFile.h | 69 src/lib/ParquetReader.cpp | 277 ++ src/lib/ParquetReader.h | 27 src/parquet/parquet_types.cpp | 952 +++++++++ src/parquet/parquet_types.h | 1010 +--------- src/protect.h | 2 src/r-base64.cpp | 3 src/r-nanoparquet.h | 19 src/r-utils.cpp | 259 ++ src/read-metadata.cpp | 2 src/read-pages.cpp | 93 src/read2.cpp | 49 src/rwrapper.cpp | 18 src/snappy.cpp | 2 src/test.cpp | 2 src/thrift/TNonCopyable.h | 2 src/thrift/TOutput.cpp | 2 src/thrift/TOutput.h | 4 src/thrift/TToString.h | 8 src/thrift/TUuid.cpp |only src/thrift/TUuid.h |only src/thrift/Thrift.h | 17 src/thrift/async/TConcurrentClientSyncInfo.h | 4 src/thrift/async/TEvhttpClientChannel.cpp | 3 src/thrift/async/TEvhttpServer.cpp | 7 src/thrift/async/TEvhttpServer.h | 2 src/thrift/concurrency/Mutex.h | 1 src/thrift/protocol/TBinaryProtocol.h | 4 src/thrift/protocol/TBinaryProtocol.tcc | 16 src/thrift/protocol/TCompactProtocol.h | 8 src/thrift/protocol/TCompactProtocol.tcc | 86 src/thrift/protocol/TDebugProtocol.cpp | 17 src/thrift/protocol/TDebugProtocol.h | 2 src/thrift/protocol/TEnum.h | 7 src/thrift/protocol/TJSONProtocol.cpp | 20 src/thrift/protocol/TJSONProtocol.h | 4 src/thrift/protocol/TProtocol.h | 48 src/thrift/protocol/TProtocolDecorator.h | 2 src/thrift/protocol/TVirtualProtocol.h | 8 src/thrift/server/TNonblockingServer.cpp | 13 src/thrift/server/TNonblockingServer.h | 3 src/thrift/transport/TBufferTransports.cpp | 9 src/thrift/transport/TBufferTransports.h | 13 src/thrift/transport/TFileTransport.cpp | 6 src/thrift/transport/TFileTransport.h | 2 src/thrift/transport/THttpServer.cpp | 2 src/thrift/transport/TPipeServer.cpp | 4 src/thrift/transport/TSSLServerSocket.cpp | 2 src/thrift/transport/TSSLSocket.cpp | 13 src/thrift/transport/TSSLSocket.h | 3 src/thrift/transport/TServerSocket.cpp | 2 src/thrift/transport/TSocket.cpp | 2 src/thrift/transport/TWebSocketServer.h | 2 src/thrift/windows/Operators.h | 5 src/thrift/windows/OverlappedSubmissionThread.h | 4 src/thrift/windows/SocketPair.cpp | 2 src/thrift/windows/Sync.h | 10 src/thrift/windows/TWinsockSingleton.h | 2 src/write2.cpp | 36 tests/testthat/_snaps/append-parquet.md |only tests/testthat/_snaps/infer-parquet-schema.md | 56 tests/testthat/_snaps/list.md |only tests/testthat/_snaps/parquet-metadata.md | 399 ++- tests/testthat/_snaps/parquet-schema.md | 93 tests/testthat/_snaps/read-parquet-2.md | 192 - tests/testthat/_snaps/read-parquet-3.md | 240 +- tests/testthat/_snaps/read-parquet-4.md | 24 tests/testthat/_snaps/read-parquet-6.md |only tests/testthat/_snaps/read-parquet.md | 18 tests/testthat/_snaps/write-encodings.md | 7 tests/testthat/_snaps/write-parquet-3.md | 548 ++--- tests/testthat/_snaps/write-parquet-4.md | 12 tests/testthat/_snaps/write-parquet-statistics.md | 16 tests/testthat/_snaps/write-parquet.md | 2 tests/testthat/data/create-data.py | 80 tests/testthat/data/decimal128.parquet |only tests/testthat/data/list-opt-opt.parquet |only tests/testthat/data/list-opt-req.parquet |only tests/testthat/data/list-req-opt.parquet |only tests/testthat/data/list-req-req.parquet |only tests/testthat/data/list-v2-opt-opt.parquet |only tests/testthat/data/list-v2-opt-req.parquet |only tests/testthat/data/list-v2-req-opt.parquet |only tests/testthat/data/list-v2-req-req.parquet |only tests/testthat/data/list.parquet |only tests/testthat/data/list_columns.parquet |only tests/testthat/data/old_list_structure.parquet |only tests/testthat/data/repeated_primitive_no_list.parquet |only tests/testthat/data/repeated_primitive_no_list_no_nest.parquet |only tests/testthat/fixtures |only tests/testthat/helper.R | 105 + tests/testthat/test-append-parquet.R | 31 tests/testthat/test-arrow-schema.R | 24 tests/testthat/test-list.R |only tests/testthat/test-parquet-cli.R |only tests/testthat/test-parquet-schema.R | 2 tests/testthat/test-read-parquet-5.R | 3 tests/testthat/test-read-parquet-6.R |only tests/testthat/test-read-parquet.R | 13 tests/testthat/test-write-encodings.R | 25 tests/testthat/test-write-large-files.R | 21 tests/testthat/test-write-parquet-2.R | 8 tests/testthat/test-write-parquet-3.R | 6 tests/testthat/test-write-parquet.R | 2 tools/types.Rmd | 23 139 files changed, 4934 insertions(+), 2413 deletions(-)
Title: Tools for Parsing, Manipulating, and Graphing Taxonomic
Abundance Data
Description: Reads, plots, and manipulates large
taxonomic data sets, like those generated from modern high-throughput
sequencing, such as metabarcoding (i.e. amplification metagenomics, 16S
metagenomics, etc). It provides a tree-based visualization called "heat
trees" used to depict statistics for every taxon in a taxonomy using
color and size. It also provides various functions to do common tasks in
microbiome bioinformatics on data in the 'taxmap' format defined by the
'taxa' package. The 'metacoder' package is described in the publication
by Foster et al. (2017) <doi:10.1371/journal.pcbi.1005404>.
Author: Zachary Foster [aut, cre],
Niklaus Grunwald [ths],
Kamil Slowikowski [ctb],
Scott Chamberlain [ctb],
Rob Gilmore [ctb]
Maintainer: Zachary Foster <zacharyfoster1989@gmail.com>
This is a re-admission after prior archival of version 0.3.8 dated 2025-02-11
Diff between metacoder versions 0.3.8 dated 2025-02-11 and 0.3.9 dated 2026-04-11
metacoder-0.3.8/metacoder/R/startup.R |only metacoder-0.3.8/metacoder/man/dot-onAttach.Rd |only metacoder-0.3.8/metacoder/man/startup_msg.Rd |only metacoder-0.3.9/metacoder/DESCRIPTION | 12 metacoder-0.3.9/metacoder/MD5 | 43 +- metacoder-0.3.9/metacoder/NAMESPACE | 1 metacoder-0.3.9/metacoder/NEWS.md | 4 metacoder-0.3.9/metacoder/R/as_phyloseq.R | 16 metacoder-0.3.9/metacoder/R/calculations--differential_abundance.R | 55 +-- metacoder-0.3.9/metacoder/R/calculations.R | 2 metacoder-0.3.9/metacoder/R/parsers.R | 25 - metacoder-0.3.9/metacoder/R/primersearch.R | 171 +++++----- metacoder-0.3.9/metacoder/R/read_fasta.R | 10 metacoder-0.3.9/metacoder/R/sequence_download.R | 23 - metacoder-0.3.9/metacoder/build/vignette.rds |binary metacoder-0.3.9/metacoder/man/as_phyloseq.Rd | 16 metacoder-0.3.9/metacoder/man/calc_diff_abund_deseq2.Rd | 55 +-- metacoder-0.3.9/metacoder/man/ncbi_taxon_sample.Rd | 23 - metacoder-0.3.9/metacoder/man/parse_phyloseq.Rd | 25 - metacoder-0.3.9/metacoder/man/primersearch.Rd | 59 +-- metacoder-0.3.9/metacoder/man/primersearch_is_installed.Rd | 5 metacoder-0.3.9/metacoder/man/primersearch_raw.Rd | 104 +++--- metacoder-0.3.9/metacoder/tests/testthat/test--calculations.R | 4 metacoder-0.3.9/metacoder/tests/testthat/test--parsers_and_writers.R | 4 24 files changed, 337 insertions(+), 320 deletions(-)
Title: Read Spectrometric Data and Metadata
Description: Parse various reflectance/transmittance/absorbance spectra file
formats to extract spectral data and metadata, as described in Gruson, White
& Maia (2019) <doi:10.21105/joss.01857>. Among other formats, it can import
files from 'Avantes' <https://www.avantes.com/>, 'CRAIC'
<https://www.microspectra.com/>, and 'OceanOptics'/'OceanInsight'
<https://www.oceanoptics.com/> brands.
Author: Hugo Gruson [cre, aut, cph] ,
Rafael Maia [aut, cph] ,
Thomas White [aut, cph] ,
Kotya Karapetyan [ctb, cph] )
Maintainer: Hugo Gruson <hugo.gruson+R@normalesup.org>
Diff between lightr versions 1.9.0 dated 2025-07-21 and 2.0.0 dated 2026-04-11
lightr-1.9.0/lightr/inst/testdata/compare/Avantes/1904090M1_0007.Raw8 |only lightr-1.9.0/lightr/inst/testdata/compare/Avantes/1904090M1_0007_1904090M1.TXT |only lightr-1.9.0/lightr/man/lr_parse_jaz.Rd |only lightr-1.9.0/lightr/man/lr_parse_jdx.Rd |only lightr-1.9.0/lightr/man/lr_parse_procspec.Rd |only lightr-1.9.0/lightr/man/lr_parse_spc.Rd |only lightr-1.9.0/lightr/man/lr_parse_trm.Rd |only lightr-1.9.0/lightr/man/lr_parse_ttt.Rd |only lightr-2.0.0/lightr/DESCRIPTION | 10 lightr-2.0.0/lightr/MD5 | 103 +++++---- lightr-2.0.0/lightr/NAMESPACE | 15 + lightr-2.0.0/lightr/NEWS.md | 24 ++ lightr-2.0.0/lightr/R/convert_tocsv.R | 36 +-- lightr-2.0.0/lightr/R/deprecated.R |only lightr-2.0.0/lightr/R/dispatch_parser.R | 29 +- lightr-2.0.0/lightr/R/endian_linter.R | 37 ++- lightr-2.0.0/lightr/R/get_metadata.R | 26 +- lightr-2.0.0/lightr/R/get_spec.R | 36 +-- lightr-2.0.0/lightr/R/parse_avantes_binary.R | 102 +++++++-- lightr-2.0.0/lightr/R/parse_avantes_converted.R | 30 +- lightr-2.0.0/lightr/R/parse_csv.R | 8 lightr-2.0.0/lightr/R/parse_generic.R | 11 - lightr-2.0.0/lightr/R/parse_jdx.R | 12 - lightr-2.0.0/lightr/R/parse_oceanoptics_converted.R | 46 ++-- lightr-2.0.0/lightr/R/parse_procspec.R | 12 - lightr-2.0.0/lightr/R/parse_spc.R | 14 + lightr-2.0.0/lightr/R/utils.R | 5 lightr-2.0.0/lightr/README.md | 108 +++++----- lightr-2.0.0/lightr/build/partial.rdb |binary lightr-2.0.0/lightr/build/vignette.rds |binary lightr-2.0.0/lightr/inst/WORDLIST | 9 lightr-2.0.0/lightr/inst/doc/batch_import.html | 7 lightr-2.0.0/lightr/inst/doc/design-principles.Rmd | 4 lightr-2.0.0/lightr/inst/doc/design-principles.html | 7 lightr-2.0.0/lightr/inst/doc/renormalise.R | 4 lightr-2.0.0/lightr/inst/doc/renormalise.Rmd | 4 lightr-2.0.0/lightr/inst/doc/renormalise.html | 14 - lightr-2.0.0/lightr/inst/doc/true_example.html | 11 - lightr-2.0.0/lightr/inst/testdata/compare/Avantes/30849.RFL8 |only lightr-2.0.0/lightr/inst/testdata/compare/Avantes/30849.csv |only lightr-2.0.0/lightr/inst/testdata/compare/rfl8x |only lightr-2.0.0/lightr/inst/testdata_sources.txt | 4 lightr-2.0.0/lightr/man/lr_parse_avantes_trm.Rd |only lightr-2.0.0/lightr/man/lr_parse_avantes_ttt.Rd |only lightr-2.0.0/lightr/man/lr_parse_craic_spc.Rd |only lightr-2.0.0/lightr/man/lr_parse_oceanoptics_jaz.Rd |only lightr-2.0.0/lightr/man/lr_parse_oceanoptics_jdx.Rd |only lightr-2.0.0/lightr/man/lr_parse_oceanoptics_procspec.Rd |only lightr-2.0.0/lightr/tests/testthat/_snaps/metadata.md | 57 ++--- lightr-2.0.0/lightr/tests/testthat/_snaps/parsers.md | 56 ++--- lightr-2.0.0/lightr/tests/testthat/test-endian_linter.R |only lightr-2.0.0/lightr/tests/testthat/test_compare_official.R | 56 +++++ lightr-2.0.0/lightr/tests/testthat/test_dispatch.R | 16 - lightr-2.0.0/lightr/tests/testthat/test_parsers.R | 63 +++-- lightr-2.0.0/lightr/vignettes/design-principles.Rmd | 4 lightr-2.0.0/lightr/vignettes/renormalise.Rmd | 4 56 files changed, 607 insertions(+), 377 deletions(-)
Title: Categorical Regression Splines
Description: Regression splines that handle a mix of continuous and categorical (discrete) data often encountered in applied settings. I would like to gratefully acknowledge support from the Natural Sciences and Engineering Research Council of Canada (NSERC, <https://www.nserc-crsng.gc.ca>), the Social Sciences and Humanities Research Council of Canada (SSHRC, <https://www.sshrc-crsh.gc.ca>), and the Shared Hierarchical Academic Research Computing Network (SHARCNET, <https://www.sharcnet.ca>). We would also like to acknowledge the contributions of the GNU GSL authors. In particular, we adapt the GNU GSL B-spline routine gsl_bspline.c adding automated support for quantile knots (in addition to uniform knots), providing missing functionality for derivatives, and for extending the splines beyond their endpoints.
Author: Jeffrey S. Racine [aut, cre],
Zhenghua Nie [aut],
Brian D. Ripley [ctb]
Maintainer: Jeffrey S. Racine <racinej@mcmaster.ca>
Diff between crs versions 0.15-39 dated 2026-01-29 and 0.15-41 dated 2026-04-11
crs-0.15-39/crs/R/console.R |only crs-0.15-39/crs/R/np.regression.glp.R |only crs-0.15-39/crs/demo/glpreg_npRmpi.R |only crs-0.15-39/crs/inst/doc/crs.R |only crs-0.15-39/crs/inst/doc/crs.Rnw |only crs-0.15-39/crs/inst/doc/crs.pdf |only crs-0.15-39/crs/inst/doc/crs_faq.Rnw |only crs-0.15-39/crs/inst/doc/crs_faq.pdf |only crs-0.15-39/crs/inst/doc/spline_primer.R |only crs-0.15-39/crs/inst/doc/spline_primer.Rnw |only crs-0.15-39/crs/inst/doc/spline_primer.pdf |only crs-0.15-39/crs/man/npglpreg.Rd |only crs-0.15-39/crs/src/nomad_src |only crs-0.15-39/crs/src/sgtelib_src |only crs-0.15-39/crs/vignettes/crs.Rnw |only crs-0.15-39/crs/vignettes/crs.bib |only crs-0.15-39/crs/vignettes/crs_faq.Rnw |only crs-0.15-39/crs/vignettes/crs_faq.bib |only crs-0.15-39/crs/vignettes/spline_primer.Rnw |only crs-0.15-39/crs/vignettes/spline_primer.bib |only crs-0.15-41/crs/CHANGELOG | 39 crs-0.15-41/crs/DESCRIPTION | 15 crs-0.15-41/crs/MD5 | 809 +++++++--- crs-0.15-41/crs/NAMESPACE | 59 crs-0.15-41/crs/R/clsd.R | 473 +++-- crs-0.15-41/crs/R/crs.R | 1620 ++++++++++++-------- crs-0.15-41/crs/R/crscv.R | 84 - crs-0.15-41/crs/R/crsiv.R | 817 ++++++++-- crs-0.15-41/crs/R/crsivderiv.R | 734 ++++++--- crs-0.15-41/crs/R/crssigtest.R | 157 - crs-0.15-41/crs/R/frscv.R | 176 +- crs-0.15-41/crs/R/frscvNOMAD.R | 1008 ++++++------ crs-0.15-41/crs/R/get.option.types.R | 85 - crs-0.15-41/crs/R/glp.model.matrix.R | 248 +-- crs-0.15-41/crs/R/gsl_bspline.R | 304 +-- crs-0.15-41/crs/R/kernel.R | 107 - crs-0.15-41/crs/R/krscv.R | 201 +- crs-0.15-41/crs/R/krscvNOMAD.R | 1176 +++++++------- crs-0.15-41/crs/R/matrix.combns.R | 36 crs-0.15-41/crs/R/mgcv.R | 35 crs-0.15-41/crs/R/nomad.progress.R |only crs-0.15-41/crs/R/print.snomadr.R | 76 crs-0.15-41/crs/R/progress.R |only crs-0.15-41/crs/R/snomadr.R | 418 +++-- crs-0.15-41/crs/R/spline.R | 1692 +++++++++++++++------ crs-0.15-41/crs/R/stepCV.R | 891 +++++------ crs-0.15-41/crs/R/util.R | 660 ++++---- crs-0.15-41/crs/R/zzz.R | 21 crs-0.15-41/crs/build/vignette.rds |binary crs-0.15-41/crs/cleanup | 5 crs-0.15-41/crs/demo/00Index | 2 crs-0.15-41/crs/demo/cqrs.R | 4 crs-0.15-41/crs/demo/crsiv.R | 214 +- crs-0.15-41/crs/demo/crsiv_exog.R | 222 +- crs-0.15-41/crs/demo/crsiv_exog_persp.R | 16 crs-0.15-41/crs/demo/radial_rgl.R | 14 crs-0.15-41/crs/demo/sine_rgl.R | 16 crs-0.15-41/crs/demo/spline.R | 1692 +++++++++++++++------ crs-0.15-41/crs/inst/doc/crs_getting_started.R |only crs-0.15-41/crs/inst/doc/crs_getting_started.Rmd |only crs-0.15-41/crs/inst/doc/crs_getting_started.html |only crs-0.15-41/crs/inst/nomad |only crs-0.15-41/crs/man/clsd.Rd | 167 +- crs-0.15-41/crs/man/crs-package.Rd | 5 crs-0.15-41/crs/man/crs.Rd | 319 ++- crs-0.15-41/crs/man/crsiv.Rd | 122 - crs-0.15-41/crs/man/crsivderiv.Rd | 121 + crs-0.15-41/crs/man/crssigtest.Rd | 12 crs-0.15-41/crs/man/data-Engel95.Rd | 12 crs-0.15-41/crs/man/data-cps71.Rd | 18 crs-0.15-41/crs/man/data-wage1.Rd | 34 crs-0.15-41/crs/man/frscv.Rd | 98 - crs-0.15-41/crs/man/frscvNOMAD.Rd | 151 + crs-0.15-41/crs/man/gsl-bs.Rd | 6 crs-0.15-41/crs/man/krscv.Rd | 113 - crs-0.15-41/crs/man/krscvNOMAD.Rd | 184 +- crs-0.15-41/crs/man/snomadr.Rd | 37 crs-0.15-41/crs/src/Makevars | 505 ++++++ crs-0.15-41/crs/src/RuniqueCombs.c | 103 + crs-0.15-41/crs/src/bspline.c | 8 crs-0.15-41/crs/src/crs_init.c | 12 crs-0.15-41/crs/src/gsl_bspline.c | 150 + crs-0.15-41/crs/src/hat_diag.c |only crs-0.15-41/crs/src/nomad4_src |only crs-0.15-41/crs/src/snomadr.cpp | 1757 +++++++++++----------- crs-0.15-41/crs/src/snomadr.h | 129 - crs-0.15-41/crs/tools |only crs-0.15-41/crs/vignettes/crs_getting_started.Rmd |only 88 files changed, 11212 insertions(+), 6977 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-04-06 4.0.3
2024-03-17 4.0.1
Title: Reparameterized Regression Models
Description: Provides estimation and data generation tools for several new regression models,
including the gamma, beta, inverse gamma and beta prime distributions. These models can be
parameterized based on the mean, median, mode, geometric mean and harmonic mean, as
specified by the user.
For details, see Bourguignon and Gallardo (2025a) <doi:10.1016/j.chemolab.2025.105382> and
Bourguignon and Gallardo (2025b) <doi:10.1111/stan.70007>.
Author: Diego Gallardo [aut, cre],
Marcelo Bourguignon [aut],
Marcia Brandao [aut]
Maintainer: Diego Gallardo <dgallardo@ubiobio.cl>
Diff between rregm versions 1.0 dated 2026-01-28 and 1.1 dated 2026-04-10
DESCRIPTION | 6 +++--- INDEX | 1 + MD5 | 19 +++++++++++++------ NAMESPACE | 7 ++++--- NEWS.md |only R/dRLN.R |only R/fit.RLN.R |only R/pRLN.R |only R/qRLN.R |only R/rRLN.R |only R/summary.rregm.R | 46 ++++++++++++++++++++++++---------------------- man/RGA.Rd | 6 +++--- man/RLN.Rd |only man/tools.rregm.Rd | 3 ++- 14 files changed, 50 insertions(+), 38 deletions(-)
Title: Highlight Conserved Edits Across Versions of a Document
Description: Input multiple versions of a source document,
and receive HTML code for a highlighted version of the source document
indicating the frequency of occurrence of phrases in the different versions.
This method is described in Chapter 3 of
Rogers (2024) <https://digitalcommons.unl.edu/dissertations/AAI31240449/>.
Author: Center for Statistics and Applications in Forensic Evidence [aut, cph,
fnd],
Rachel Rogers [aut, cre] ,
Susan VanderPlas [aut]
Maintainer: Rachel Rogers <rrogers.rpackages@gmail.com>
Diff between highlightr versions 1.2.0 dated 2025-10-18 and 2.0.0 dated 2026-04-10
highlightr-1.2.0/highlightr/R/collocate_comments.R |only highlightr-1.2.0/highlightr/R/collocate_comments_fuzzy.R |only highlightr-1.2.0/highlightr/R/token_comments.R |only highlightr-1.2.0/highlightr/R/token_transcript.R |only highlightr-1.2.0/highlightr/R/transcript_frequency.R |only highlightr-1.2.0/highlightr/data/comment_example.rda |only highlightr-1.2.0/highlightr/data/transcript_example.rda |only highlightr-1.2.0/highlightr/man/collocate_comments.Rd |only highlightr-1.2.0/highlightr/man/collocate_comments_fuzzy.Rd |only highlightr-1.2.0/highlightr/man/comment_example.Rd |only highlightr-1.2.0/highlightr/man/token_comments.Rd |only highlightr-1.2.0/highlightr/man/token_transcript.Rd |only highlightr-1.2.0/highlightr/man/transcript_example.Rd |only highlightr-1.2.0/highlightr/man/transcript_frequency.Rd |only highlightr-1.2.0/highlightr/tests/testthat/test-collocate_comments.R |only highlightr-1.2.0/highlightr/tests/testthat/test-collocate_comments_fuzzy.R |only highlightr-1.2.0/highlightr/tests/testthat/test-token_comments.R |only highlightr-1.2.0/highlightr/tests/testthat/test-token_transcript.R |only highlightr-1.2.0/highlightr/tests/testthat/test-transcript_frequency.R |only highlightr-2.0.0/highlightr/DESCRIPTION | 10 highlightr-2.0.0/highlightr/MD5 | 62 highlightr-2.0.0/highlightr/NAMESPACE | 6 highlightr-2.0.0/highlightr/NEWS.md | 11 highlightr-2.0.0/highlightr/R/collocation_frequency.R |only highlightr-2.0.0/highlightr/R/collocation_plot.R | 41 highlightr-2.0.0/highlightr/R/data.R | 25 highlightr-2.0.0/highlightr/R/highlighted_text.R | 16 highlightr-2.0.0/highlightr/README.md | 23 highlightr-2.0.0/highlightr/data/notepad_example.rda |only highlightr-2.0.0/highlightr/inst/doc/highlightr.R | 63 highlightr-2.0.0/highlightr/inst/doc/highlightr.Rmd | 107 - highlightr-2.0.0/highlightr/inst/doc/highlightr.html | 435 +++-- highlightr-2.0.0/highlightr/inst/doc/wikipedia-highlighter.R | 43 highlightr-2.0.0/highlightr/inst/doc/wikipedia-highlighter.Rmd | 54 highlightr-2.0.0/highlightr/inst/doc/wikipedia-highlighter.html | 785 ++++------ highlightr-2.0.0/highlightr/man/collocation_frequency.Rd |only highlightr-2.0.0/highlightr/man/collocation_plot.Rd | 34 highlightr-2.0.0/highlightr/man/highlighted_text.Rd | 16 highlightr-2.0.0/highlightr/man/notepad_example.Rd |only highlightr-2.0.0/highlightr/tests/testthat/test-collocation_frequency.R |only highlightr-2.0.0/highlightr/tests/testthat/test-collocation_plot.R | 69 highlightr-2.0.0/highlightr/tests/testthat/test-highlighted_text.R | 57 highlightr-2.0.0/highlightr/vignettes/highlightr.Rmd | 107 - highlightr-2.0.0/highlightr/vignettes/wikipedia-highlighter.Rmd | 54 44 files changed, 944 insertions(+), 1074 deletions(-)
Title: Descriptive Statistics, Summary Tables, and Data Management
Tools
Description: Provides tools for descriptive data analysis,
variable inspection, data management, and tabulation workflows in 'R'.
Summarizes variable metadata, labels, classes, missing values, and
representative values, with support for readable frequency tables,
cross-tabulations, association measures for contingency tables
(Cramer's V, Phi, Goodman-Kruskal Gamma, Kendall's Tau-b, Somers' D,
and others), categorical and continuous summary tables, and
model-based bivariate tables for continuous outcomes, including
APA-style reporting outputs. Includes helpers for interactive
codebooks, variable label extraction, clipboard export, and row-wise
descriptive summaries. Designed to make descriptive analysis and
reporting faster, clearer, and easier to work with in practice.
Author: Amal Tawfik [aut, cre, cph]
Maintainer: Amal Tawfik <amal.tawfik@hesav.ch>
Diff between spicy versions 0.7.0 dated 2026-03-30 and 0.8.0 dated 2026-04-10
spicy-0.7.0/spicy/man/figures/README-pressure-1.png |only spicy-0.7.0/spicy/man/figures/logo_dragon.png |only spicy-0.7.0/spicy/man/figures/logo_old.png |only spicy-0.7.0/spicy/man/figures/varlist_1.png |only spicy-0.7.0/spicy/man/figures/varlist_2.png |only spicy-0.8.0/spicy/DESCRIPTION | 13 spicy-0.8.0/spicy/MD5 | 115 spicy-0.8.0/spicy/NAMESPACE | 2 spicy-0.8.0/spicy/NEWS.md | 16 spicy-0.8.0/spicy/R/assoc.R | 2 spicy-0.8.0/spicy/R/count_n.R | 30 spicy-0.8.0/spicy/R/cross_tab.R | 15 spicy-0.8.0/spicy/R/freq.R | 14 spicy-0.8.0/spicy/R/freq_print.R | 1 spicy-0.8.0/spicy/R/spicy_tables.R | 1 spicy-0.8.0/spicy/R/table_categorical_print.R | 1 spicy-0.8.0/spicy/R/table_continuous.R | 202 spicy-0.8.0/spicy/R/table_continuous_lm.R |only spicy-0.8.0/spicy/R/table_continuous_lm_print.R |only spicy-0.8.0/spicy/R/table_continuous_print.R | 9 spicy-0.8.0/spicy/README.md | 45 spicy-0.8.0/spicy/build/vignette.rds |binary spicy-0.8.0/spicy/inst/doc/spicy.R | 24 spicy-0.8.0/spicy/inst/doc/spicy.Rmd | 23 spicy-0.8.0/spicy/inst/doc/spicy.html | 701 spicy-0.8.0/spicy/inst/doc/summary-tables-reporting.R | 148 spicy-0.8.0/spicy/inst/doc/summary-tables-reporting.Rmd | 68 spicy-0.8.0/spicy/inst/doc/summary-tables-reporting.html | 2622 spicy-0.8.0/spicy/inst/doc/table-categorical.R | 190 spicy-0.8.0/spicy/inst/doc/table-categorical.Rmd | 20 spicy-0.8.0/spicy/inst/doc/table-categorical.html | 4889 spicy-0.8.0/spicy/inst/doc/table-continuous-lm.R |only spicy-0.8.0/spicy/inst/doc/table-continuous-lm.Rmd |only spicy-0.8.0/spicy/inst/doc/table-continuous-lm.html |only spicy-0.8.0/spicy/inst/doc/table-continuous.R | 52 spicy-0.8.0/spicy/inst/doc/table-continuous.Rmd | 22 spicy-0.8.0/spicy/inst/doc/table-continuous.html | 1751 spicy-0.8.0/spicy/inst/doc/variable-exploration.R | 20 spicy-0.8.0/spicy/inst/doc/variable-exploration.Rmd | 6 spicy-0.8.0/spicy/inst/doc/variable-exploration.html |76565 ---------- spicy-0.8.0/spicy/man/count_n.Rd | 30 spicy-0.8.0/spicy/man/cross_tab.Rd | 5 spicy-0.8.0/spicy/man/figures/logo.png |binary spicy-0.8.0/spicy/man/figures/logo.svg |only spicy-0.8.0/spicy/man/figures/logo_old_last.png |only spicy-0.8.0/spicy/man/freq.Rd | 14 spicy-0.8.0/spicy/man/print.spicy_assoc_detail.Rd | 1 spicy-0.8.0/spicy/man/print.spicy_assoc_table.Rd | 1 spicy-0.8.0/spicy/man/print.spicy_categorical_table.Rd | 1 spicy-0.8.0/spicy/man/print.spicy_continuous_lm_table.Rd |only spicy-0.8.0/spicy/man/print.spicy_continuous_table.Rd | 1 spicy-0.8.0/spicy/man/print.spicy_cross_table.Rd | 1 spicy-0.8.0/spicy/man/print.spicy_cross_table_list.Rd |only spicy-0.8.0/spicy/man/print.spicy_freq_table.Rd | 1 spicy-0.8.0/spicy/man/spicy-package.Rd | 2 spicy-0.8.0/spicy/man/spicy_tables.Rd | 1 spicy-0.8.0/spicy/man/table_continuous.Rd | 166 spicy-0.8.0/spicy/man/table_continuous_lm.Rd |only spicy-0.8.0/spicy/tests/testthat/test-table_continuous.R | 38 spicy-0.8.0/spicy/tests/testthat/test-table_continuous_lm.R |only spicy-0.8.0/spicy/tools/coverage_table_continuous_lm.R |only spicy-0.8.0/spicy/tools/coverage_table_continuous_lm_probes.R |only spicy-0.8.0/spicy/vignettes/spicy.Rmd | 23 spicy-0.8.0/spicy/vignettes/summary-tables-reporting.Rmd | 68 spicy-0.8.0/spicy/vignettes/table-categorical.Rmd | 20 spicy-0.8.0/spicy/vignettes/table-continuous-lm.Rmd |only spicy-0.8.0/spicy/vignettes/table-continuous.Rmd | 22 spicy-0.8.0/spicy/vignettes/variable-exploration.Rmd | 6 68 files changed, 1384 insertions(+), 86584 deletions(-)
Title: Penalised Regression with Multiple Sets of Prior Effects
('Transfer Learning')
Description: Improves the predictive performance of ridge and lasso regression exploiting one or more sources of prior information on the importance and direction of effects (Rauschenberger and others 2023, <doi:10.1093/bioinformatics/btad680>). For running the vignette (optional), install 'fwelnet' and 'ecpc' from <https://github.com/kjytay/fwelnet> and <https://github.com/Mirrelijn/ecpc>, respectively.
Author: Armin Rauschenberger [aut, cre]
Maintainer: Armin Rauschenberger <armin.rauschenberger@uni.lu>
Diff between transreg versions 1.0.5 dated 2025-07-26 and 1.0.6 dated 2026-04-10
DESCRIPTION | 8 MD5 | 12 R/functions.R | 15 build/partial.rdb |binary build/vignette.rds |binary inst/doc/analysis.R | 1450 ++++++++++++++++++++++++------------------------- inst/doc/analysis.html | 206 ++---- 7 files changed, 833 insertions(+), 858 deletions(-)
Title: Regression under Interference in Connected Populations
Description: An implementation of generalized linear models (GLMs) for studying relationships among attributes in connected populations, where responses of connected units can be dependent, as introduced by Fritz et al. (2025) <doi:10.1080/01621459.2025.2565851>. 'igml' extends GLMs for independent responses to dependent responses and can be used for studying spillover in connected populations and other network-mediated phenomena.
Author: Cornelius Fritz [aut, cre],
Michael Schweinberger [aut]
Maintainer: Cornelius Fritz <corneliusfritz2010@gmail.com>
Diff between iglm versions 1.2.2 dated 2026-03-30 and 1.2.3 dated 2026-04-10
DESCRIPTION | 8 +-- MD5 | 8 +-- inst/include/iglm/xz_class.h | 4 + src/change_statistics.cpp | 106 +++++++++++++++++++++++++++++++------------ src/iglm_classes.cpp | 7 ++ 5 files changed, 96 insertions(+), 37 deletions(-)
Title: Bayesian Analysis of Dynamic Generalized Linear Models
Description: Provide routines for filtering and smoothing, forecasting, sampling and Bayesian analysis of Dynamic Generalized Linear Models using the methodology described in Alves et al. (2024)<doi:10.48550/arXiv.2201.05387> and dos Santos Jr. et al. (2024)<doi:10.48550/arXiv.2403.13069>.
Author: Silvaneo dos Santos Jr. [aut, cre],
Mariane Branco Alves [aut],
Helio dos Santos Migon [aut]
Maintainer: Silvaneo dos Santos Jr. <silvaneojunior@utexas.edu>
Diff between kDGLM versions 1.2.12 dated 2026-02-04 and 1.2.14 dated 2026-04-10
DESCRIPTION | 8 - MD5 | 55 +++++----- NAMESPACE | 2 R/func_helper.R | 2 R/main.R | 16 +-- R/methods.R | 2 R/plot_helper.R | 57 ++++++++--- R/structure_helper.R | 77 +++++++++++---- R/summarize.R | 4 build/partial.rdb |binary inst/doc/example1.R | 2 inst/doc/example1.Rmd | 2 inst/doc/example1.html | 236 ++++++++++++++++++++++------------------------ inst/doc/fitting.R | 8 - inst/doc/fitting.Rmd | 8 - inst/doc/fitting.html | 8 - inst/doc/intro.html | 12 +- inst/doc/outcomes.html | 2 man/create.multi.block.Rd |only man/ffs_block.Rd | 2 man/harmonic_block.Rd | 2 man/polynomial_block.Rd | 2 man/print.fitted_dlm.Rd | 2 man/regression_block.Rd | 2 man/summary.fitted_dlm.Rd | 2 man/tf_block.Rd | 12 ++ man/var_decomp.Rd | 2 vignettes/example1.Rmd | 2 vignettes/fitting.Rmd | 8 - 29 files changed, 318 insertions(+), 219 deletions(-)
Title: A 'recipes' Extension for Persistent Homology and Its
Vectorizations
Description: Topological data analytic methods in machine learning rely on
vectorizations of the persistence diagrams that encode persistent
homology, as surveyed by Ali &al (2000)
<doi:10.48550/arXiv.2212.09703>. Persistent homology can be computed
using 'TDA' and 'ripserr' and vectorized using 'TDAvec'. The
Tidymodels package collection modularizes machine learning in R for
straightforward extensibility; see Kuhn & Silge (2022,
ISBN:978-1-4920-9644-3). These 'recipe' steps and 'dials' tuners make
efficient algorithms for computing and vectorizing persistence
diagrams available for Tidymodels workflows.
Author: Jason Cory Brunson [cre, aut]
Maintainer: Jason Cory Brunson <cornelioid@gmail.com>
Diff between tdarec versions 0.2.0 dated 2025-06-20 and 0.2.1 dated 2026-04-10
DESCRIPTION | 8 MD5 | 23 NEWS.md | 6 R/param-blur-sigmas.R | 4 R/param-hom-degree.R | 4 R/vpd-finalizers.R | 6 README.md | 97 build/vignette.rds |binary inst/doc/hyperparameter-tuning.Rmd | 218 + inst/doc/hyperparameter-tuning.html | 1482 +++++------- vignettes/hyperparameter-tuning.Rmd | 218 + vignettes/vignette-parameter-plot-of-tuning-results-1.png |only vignettes/vignette-performance-plot-of-tuning-results-1.png |only vignettes/vignette-volcano-persistence-1.png |only 14 files changed, 976 insertions(+), 1090 deletions(-)
Title: A Lightweight, Flexible, and Fast Data Validation Package that
Can Handle All Sizes of Data
Description: Allows you to define rules which can be used to verify a given
dataset.
The package acts as a thin wrapper around more powerful data packages such
as 'dplyr', 'data.table', 'arrow', and 'DBI' ('SQL'), which do the heavy lifting.
Author: David Zimmermann-Kollenda [aut, cre],
Beniamino Green [ctb]
Maintainer: David Zimmermann-Kollenda <david_j_zimmermann@hotmail.com>
Diff between dataverifyr versions 0.1.8 dated 2024-01-10 and 0.1.11 dated 2026-04-10
DESCRIPTION | 12 LICENSE | 4 MD5 | 70 - NAMESPACE | 48 NEWS.md | 76 - R/check_data.R | 640 +++++----- R/data_column.R |only R/describe.R |only R/filters.R | 179 +- R/im-export.R | 156 +- R/misc.R | 100 - R/rule.R | 294 ++-- R/ruleset_construction.R | 105 - R/sample_data.R |only R/visualization.R | 220 +-- R/zzz.R | 14 README.md | 1848 ++++++++++++++++++----------- man/bind_rules.Rd | 36 man/check_data.Rd | 127 + man/data_column.Rd |only man/dataverifyr_plus.Rd | 54 man/describe.Rd |only man/detect_backend.Rd | 55 man/figures/README-plotres-1.png |binary man/figures/README-taxi3-1.png |binary man/filter_fails.Rd | 78 - man/reference_rule.Rd |only man/rule.Rd | 132 +- man/ruleset.Rd | 112 + man/sample_data.Rd |only man/write_rules.Rd | 74 - tests/testthat.R | 24 tests/testthat/test-check_data.R | 601 ++++----- tests/testthat/test-describe.R |only tests/testthat/test-detect_backend.R | 145 +- tests/testthat/test-features-v1.R |only tests/testthat/test-filters.R | 118 - tests/testthat/test-im-export.R | 182 +- tests/testthat/test-rule.R | 117 + tests/testthat/test-ruleset_construction.R | 156 +- tests/testthat/test-sample_data.R |only 41 files changed, 3377 insertions(+), 2400 deletions(-)
Title: Transform Models into 'LaTeX' Equations
Description: The goal of 'equatiomatic' is to reduce the pain
associated with writing 'LaTeX' formulas from fitted models. The
primary function of the package, extract_eq(), takes a fitted model
object as its input and returns the corresponding 'LaTeX' code for the
model.
Author: Daniel Anderson [aut] ,
Andrew Heiss [aut] ,
Jay Sumners [aut],
Joshua Rosenberg [ctb] ,
Jonathan Sidi [ctb] ,
Ellis Hughes [ctb] ,
Thomas Fung [ctb] ,
Reza Norouzian [ctb] ,
Indrajeet Patil [ctb] ,
Quinn White [ctb] ,
David Kane [ctb],
Philippe Gros [...truncated...]
Maintainer: Philippe Grosjean <phgrosjean@sciviews.org>
Diff between equatiomatic versions 0.4.4 dated 2025-08-26 and 0.4.8 dated 2026-04-10
DESCRIPTION | 6 +- MD5 | 34 +++++++-------- NEWS.md | 19 ++++++++ R/equation.R | 2 R/extract_eq.R | 31 ++++++++------ R/extract_lhs.R | 83 ++++++++++++++++++++++++--------------- R/print.R | 2 inst/doc/equatiomatic.Rmd | 2 inst/doc/equatiomatic.html | 8 +-- inst/doc/tests_and_coverage.html | 2 inst/doc/tidymodels.Rmd | 2 inst/doc/tidymodels.html | 8 +-- man/extract_eq.Rd | 6 ++ tests/testthat/_snaps/glm.md | 30 ++++++++++++++ tests/testthat/test-glm.R | 29 +++++++++++++ tests/testthat/test-lmerMod.R | 8 ++- vignettes/equatiomatic.Rmd | 2 vignettes/tidymodels.Rmd | 2 18 files changed, 195 insertions(+), 81 deletions(-)
Title: Age Band Decomposition Method for Tree Ring Standardization
Description: Implements the Age Band Decomposition (ABD) method for
standardizing tree ring width data while preserving both low and high frequency
variability. Unlike traditional detrending approaches that can distort long term
growth trends, ABD decomposes ring width series into multiple age classes, detrends
each class separately, and then recombines them to create standardized chronologies.
This approach improves the detection of growth signals linked to past climatic and
environmental factors, making it particularly valuable for dendroecological and
dendroclimatological studies. The package provides functions to perform ABD-based
standardization, compare results with other common methods (e.g., BAI, C method, RCS),
and facilitate the interpretation of growth patterns under current and future climate
variability.
Author: Nicola Puletti [aut, cre] ,
Gianluigi Mazza [aut] ,
Dimitrios Sarris [ctb]
Maintainer: Nicola Puletti <nicola.puletti@crea.gov.it>
Diff between AgeBandDecomposition versions 2.0.0 dated 2026-02-04 and 2.0.1 dated 2026-04-10
DESCRIPTION | 6 +++--- MD5 | 14 ++++++++++---- NEWS.md | 5 +++-- R/import_rwl.R | 9 ++++++++- R/po_test_data.R |only R/rwl_test_data.R |only data/po_test_data.rda |only data/rwl_test_data.rda |only man/import_rwl.Rd | 9 ++++++++- man/po_test_data.Rd |only man/rwl_test_data.Rd |only 11 files changed, 32 insertions(+), 11 deletions(-)
More information about AgeBandDecomposition at CRAN
Permanent link
Title: Seamless Access to World Bank World Development Indicators (WDI)
Description: Access and analyze the World Bank's World Development Indicators
(WDI) using the corresponding API <https://datahelpdesk.worldbank.org/knowledgebase/articles/889392-about-the-indicators-api-documentation>.
WDI provides more than 24,000 country or region-level indicators for various
contexts. 'wbwdi' enables users to download, process and work with WDI
series across multiple countries, aggregates, and time periods.
Author: Christoph Scheuch [aut, cre, cph]
Maintainer: Christoph Scheuch <christoph@tidy-intelligence.com>
Diff between wbwdi versions 1.0.3 dated 2025-11-20 and 1.0.4 dated 2026-04-10
DESCRIPTION | 6 - MD5 | 34 ++++----- NEWS.md | 6 + R/perform_request.R | 7 + R/wdi_get.R | 20 ++--- R/wdi_get_languages.R | 3 README.md | 30 ++++---- build/vignette.rds |binary man/wdi_get.Rd | 2 tests/testthat/tests-perform_request.R | 100 ++++++++++++++++++++++++--- tests/testthat/tests-wdi_get.R | 35 ++++++++- tests/testthat/tests-wdi_get_entities.R | 9 +- tests/testthat/tests-wdi_get_indicators.R | 9 +- tests/testthat/tests-wdi_get_languages.R | 10 ++ tests/testthat/tests-wdi_get_lending_types.R | 9 +- tests/testthat/tests-wdi_get_regions.R | 9 +- tests/testthat/tests-wdi_get_sources.R | 9 +- tests/testthat/tests-wdi_get_topics.R | 9 +- 18 files changed, 223 insertions(+), 84 deletions(-)
Title: A Shiny Dashboard Template Modular System with Chat Bot Support
Description: A template dashboard system with AI agent integrated.
Comes with default themes that can be customized.
Developers can upload modified templates on 'Github', and users can
easily download templates with 'RStudio' project wizard.
The key features of the default template include light and dark theme
switcher, resizing graphs, synchronizing inputs across sessions,
new notification system, fancy progress bars, and card-like flip
panels with back sides, as well as various of 'HTML' tool widgets.
Author: Zhengjia Wang [cph, aut, cre] ,
ColorlibHQ [cph] ,
Bootstrap contributors [ctb] ,
Twitter, Inc [cph] ,
Ivan Sagalaev [ctb, cph] ,
Rene Haas [ctb, cph] ,
Zeno Rocha [ctb, cph]
Maintainer: Zhengjia Wang <dipterix.wang@gmail.com>
Diff between shidashi versions 0.1.8 dated 2026-03-23 and 0.2.0 dated 2026-04-10
shidashi-0.1.8/shidashi/R/shared-session.R |only shidashi-0.1.8/shidashi/inst/builtin-templates/bslib-bare/www/shidashi/js/index.js.map |only shidashi-0.1.8/shidashi/man/javascript-tunnel.Rd |only shidashi-0.1.8/shidashi/man/register_global_reactiveValues.Rd |only shidashi-0.2.0/shidashi/DESCRIPTION | 8 shidashi-0.2.0/shidashi/MD5 | 185 +- shidashi-0.2.0/shidashi/NAMESPACE | 33 shidashi-0.2.0/shidashi/NEWS.md | 78 shidashi-0.2.0/shidashi/R/aaa.R | 188 ++ shidashi-0.2.0/shidashi/R/accordion.R | 22 shidashi-0.2.0/shidashi/R/barebone.R | 88 - shidashi-0.2.0/shidashi/R/card-badge.R |only shidashi-0.2.0/shidashi/R/card-tabset.R | 16 shidashi-0.2.0/shidashi/R/card-tool.R | 40 shidashi-0.2.0/shidashi/R/card.R | 62 shidashi-0.2.0/shidashi/R/chat-helpers.R | 2 shidashi-0.2.0/shidashi/R/chatbot.R | 75 shidashi-0.2.0/shidashi/R/clipboard.R | 16 shidashi-0.2.0/shidashi/R/drawer.R | 8 shidashi-0.2.0/shidashi/R/globals.R | 805 +++++++++- shidashi-0.2.0/shidashi/R/info-box.R | 10 shidashi-0.2.0/shidashi/R/mcp-handler.R | 170 -- shidashi-0.2.0/shidashi/R/mcp-wrapper.R | 413 ++++- shidashi-0.2.0/shidashi/R/menu-item.R | 35 shidashi-0.2.0/shidashi/R/modules.R | 61 shidashi-0.2.0/shidashi/R/notification.R | 8 shidashi-0.2.0/shidashi/R/progress.R | 46 shidashi-0.2.0/shidashi/R/render.R | 34 shidashi-0.2.0/shidashi/R/settings.R | 22 shidashi-0.2.0/shidashi/R/standalone-viewer.R |only shidashi-0.2.0/shidashi/R/stream-viz.R |only shidashi-0.2.0/shidashi/R/stream.R |only shidashi-0.2.0/shidashi/R/ui-adminlte.R | 83 - shidashi-0.2.0/shidashi/R/utils.R | 2 shidashi-0.2.0/shidashi/R/widgets.R | 32 shidashi-0.2.0/shidashi/R/zzz.R | 2 shidashi-0.2.0/shidashi/inst/builtin-templates/AdminLTE3-bare/R/common.R | 16 shidashi-0.2.0/shidashi/inst/builtin-templates/AdminLTE3-bare/ui.R | 2 shidashi-0.2.0/shidashi/inst/builtin-templates/bslib-bare/_rs_job.R |only shidashi-0.2.0/shidashi/inst/builtin-templates/bslib-bare/modules.yaml | 22 shidashi-0.2.0/shidashi/inst/builtin-templates/bslib-bare/modules/aiagent/R/aiagent-ui.R | 58 shidashi-0.2.0/shidashi/inst/builtin-templates/bslib-bare/modules/aiagent/server.R | 2 shidashi-0.2.0/shidashi/inst/builtin-templates/bslib-bare/modules/card/R/aaa.R | 2 shidashi-0.2.0/shidashi/inst/builtin-templates/bslib-bare/modules/card/R/basic.R | 2 shidashi-0.2.0/shidashi/inst/builtin-templates/bslib-bare/modules/card/R/card-badge.R |only shidashi-0.2.0/shidashi/inst/builtin-templates/bslib-bare/modules/card/R/card-set.R | 4 shidashi-0.2.0/shidashi/inst/builtin-templates/bslib-bare/modules/card/R/card-tools.R | 14 shidashi-0.2.0/shidashi/inst/builtin-templates/bslib-bare/modules/card/R/card2.R | 6 shidashi-0.2.0/shidashi/inst/builtin-templates/bslib-bare/modules/card/R/demo-card.R | 18 shidashi-0.2.0/shidashi/inst/builtin-templates/bslib-bare/modules/card/module-ui.html | 12 shidashi-0.2.0/shidashi/inst/builtin-templates/bslib-bare/modules/card/server.R | 51 shidashi-0.2.0/shidashi/inst/builtin-templates/bslib-bare/modules/demo/R/demo-ui.R | 133 - shidashi-0.2.0/shidashi/inst/builtin-templates/bslib-bare/modules/demo/server.R | 2 shidashi-0.2.0/shidashi/inst/builtin-templates/bslib-bare/modules/filestructure/R/filestructure-ui.R | 22 shidashi-0.2.0/shidashi/inst/builtin-templates/bslib-bare/modules/filestructure/server.R | 2 shidashi-0.2.0/shidashi/inst/builtin-templates/bslib-bare/modules/getstarted/R/demo-ui.R | 11 shidashi-0.2.0/shidashi/inst/builtin-templates/bslib-bare/modules/getstarted/R/prerequisite.R | 2 shidashi-0.2.0/shidashi/inst/builtin-templates/bslib-bare/modules/getstarted/R/template.R | 2 shidashi-0.2.0/shidashi/inst/builtin-templates/bslib-bare/modules/getstarted/server.R | 2 shidashi-0.2.0/shidashi/inst/builtin-templates/bslib-bare/modules/mcpsetup/R/mcpsetup-ui.R | 4 shidashi-0.2.0/shidashi/inst/builtin-templates/bslib-bare/modules/mcpsetup/server.R | 2 shidashi-0.2.0/shidashi/inst/builtin-templates/bslib-bare/modules/output_widgets |only shidashi-0.2.0/shidashi/inst/builtin-templates/bslib-bare/modules/page500/server.R | 2 shidashi-0.2.0/shidashi/inst/builtin-templates/bslib-bare/modules/session_events |only shidashi-0.2.0/shidashi/inst/builtin-templates/bslib-bare/modules/standalone_viewer |only shidashi-0.2.0/shidashi/inst/builtin-templates/bslib-bare/modules/stream_viz |only shidashi-0.2.0/shidashi/inst/builtin-templates/bslib-bare/modules/widgets/R/aaa.R | 2 shidashi-0.2.0/shidashi/inst/builtin-templates/bslib-bare/modules/widgets/R/demo-flip-box.R | 8 shidashi-0.2.0/shidashi/inst/builtin-templates/bslib-bare/modules/widgets/R/demo-info-box.R | 20 shidashi-0.2.0/shidashi/inst/builtin-templates/bslib-bare/modules/widgets/R/demo-new-features.R | 2 shidashi-0.2.0/shidashi/inst/builtin-templates/bslib-bare/modules/widgets/R/demo-notification.R | 6 shidashi-0.2.0/shidashi/inst/builtin-templates/bslib-bare/modules/widgets/R/demo-progress.R | 10 shidashi-0.2.0/shidashi/inst/builtin-templates/bslib-bare/modules/widgets/server.R | 2 shidashi-0.2.0/shidashi/inst/builtin-templates/bslib-bare/server.R | 12 shidashi-0.2.0/shidashi/inst/builtin-templates/bslib-bare/ui.R | 2 shidashi-0.2.0/shidashi/inst/builtin-templates/bslib-bare/www/shidashi/css/shidashi.css | 2 shidashi-0.2.0/shidashi/inst/builtin-templates/bslib-bare/www/shidashi/css/shidashi.css.map | 4 shidashi-0.2.0/shidashi/inst/builtin-templates/bslib-bare/www/shidashi/js/index.js | 22 shidashi-0.2.0/shidashi/inst/htmlwidgets |only shidashi-0.2.0/shidashi/man/add-remove-html-class.Rd | 2 shidashi-0.2.0/shidashi/man/as_icon.Rd | 2 shidashi-0.2.0/shidashi/man/back_top_button.Rd | 2 shidashi-0.2.0/shidashi/man/card_badge.Rd |only shidashi-0.2.0/shidashi/man/drawer.Rd | 2 shidashi-0.2.0/shidashi/man/fire_event.Rd |only shidashi-0.2.0/shidashi/man/html_asis.Rd |only shidashi-0.2.0/shidashi/man/html_class.Rd |only shidashi-0.2.0/shidashi/man/module_info.Rd | 16 shidashi-0.2.0/shidashi/man/progressOutput.Rd | 2 shidashi-0.2.0/shidashi/man/read_stream_vis.Rd |only shidashi-0.2.0/shidashi/man/register_io.Rd | 66 shidashi-0.2.0/shidashi/man/register_session.Rd |only shidashi-0.2.0/shidashi/man/render.Rd | 2 shidashi-0.2.0/shidashi/man/renderStreamViz.Rd |only shidashi-0.2.0/shidashi/man/server_standalone_viewer.Rd |only shidashi-0.2.0/shidashi/man/shiny_progress.Rd | 6 shidashi-0.2.0/shidashi/man/streamVizOutput.Rd |only shidashi-0.2.0/shidashi/man/stream_file_id.Rd |only shidashi-0.2.0/shidashi/man/stream_init.Rd |only shidashi-0.2.0/shidashi/man/stream_path.Rd |only shidashi-0.2.0/shidashi/man/stream_to_js.Rd |only shidashi-0.2.0/shidashi/man/stream_viz.Rd |only shidashi-0.2.0/shidashi/man/updateStreamViz.Rd |only 103 files changed, 2304 insertions(+), 825 deletions(-)
Title: Functional Programming Tools
Description: A complete and consistent functional programming toolkit for
R.
Author: Hadley Wickham [aut, cre] ,
Lionel Henry [aut],
Posit Software, PBC [cph, fnd]
Maintainer: Hadley Wickham <hadley@posit.co>
Diff between purrr versions 1.2.1 dated 2026-01-09 and 1.2.2 dated 2026-04-10
DESCRIPTION | 6 ++-- MD5 | 34 +++++++++++++-------------- NEWS.md | 24 +++++++++++-------- R/modify.R | 4 +-- man/modify.Rd | 3 +- src/cleancall.c | 3 +- src/init.c | 3 ++ src/pluck.c | 37 +++++++++++++---------------- src/utils.c | 39 +++++++++++++++++++++++++++++++ src/utils.h | 6 ++++ tests/testthat/_snaps/every-some-none.md | 3 ++ tests/testthat/_snaps/list-simplify.md | 1 tests/testthat/_snaps/map.md | 2 + tests/testthat/_snaps/map2.md | 2 + tests/testthat/_snaps/modify.md | 3 ++ tests/testthat/_snaps/parallel.md | 3 ++ tests/testthat/_snaps/pmap.md | 1 tests/testthat/test-pluck.R | 6 ++++ 18 files changed, 126 insertions(+), 54 deletions(-)
Title: High-Performance Geocoding using 'photon'
Description: Features unstructured, structured and reverse geocoding using the
'photon' geocoding API <https://photon.komoot.io/>.
Facilitates the setup of local 'photon' instances to enable offline
geocoding.
Author: Jonas Lieth [aut, cre, cph]
Maintainer: Jonas Lieth <jslth@outlook.com>
This is a re-admission after prior archival of version 1.0.0 dated 2026-02-28
Diff between photon versions 1.0.0 dated 2026-02-28 and 1.0.0-1 dated 2026-04-10
DESCRIPTION | 6 +++--- MD5 | 6 +++--- inst/doc/photon.html | 8 ++++---- tests/testthat/test-utils.R | 1 - 4 files changed, 10 insertions(+), 11 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-10-12 0.1.1
2017-07-25 0.1.0
More information about SelectBoost.FDA at CRAN
Permanent link
Title: Continuous Norming
Description: A toolbox for continuous norming of psychological and educational tests, supporting regression-based norming where norms can vary as a continuous function of age or another norm predictor. Norms are estimated using Generalized Additive Models for Location, Scale, and Shape (GAMLSS), enabling flexible modelling of the full score distribution in a normative sample. The package supports applications in psychometrics and psychological testing, and includes functions for model selection, reliability estimation, norm calculation, including confidence intervals, and sample size planning. For more details, see Timmerman et al. (2021) <doi:10.1037/met0000348>.
Author: Klazien de Vries [aut] ,
Hannah Heister [aut] ,
Julian Urban [aut] ,
Lieke Voncken [ctb] ,
Marieke Timmerman [aut, cre]
Maintainer: Marieke Timmerman <m.e.timmerman@rug.nl>
Diff between normref versions 0.0.0.1 dated 2025-10-06 and 0.1.1 dated 2026-04-10
normref-0.0.0.1/normref/vignettes/intro_to_normr.html |only normref-0.1.1/normref/DESCRIPTION | 12 normref-0.1.1/normref/MD5 | 28 normref-0.1.1/normref/NAMESPACE | 1 normref-0.1.1/normref/NEWS.md | 14 normref-0.1.1/normref/R/model_selection.R | 122 - normref-0.1.1/normref/R/preprocess.R | 250 +++ normref-0.1.1/normref/build/partial.rdb |binary normref-0.1.1/normref/inst/REFERENCES.bib | 15 normref-0.1.1/normref/inst/doc/intro_to_normref.R | 36 normref-0.1.1/normref/inst/doc/intro_to_normref.Rmd | 62 normref-0.1.1/normref/inst/doc/intro_to_normref.html | 1103 +++++++++-------- normref-0.1.1/normref/inst/extdata |only normref-0.1.1/normref/man/sample_size_poly.Rd |only normref-0.1.1/normref/tests/testthat/test-preprocess.R | 107 + normref-0.1.1/normref/vignettes/intro_to_normref.Rmd | 62 16 files changed, 1251 insertions(+), 561 deletions(-)
Title: Interpreting High Resolution Mass Spectra
Description: High resolution mass spectrometry yields often large data sets of
spectra from compounds which are not present in available libraries. These
spectra need to be annotated and interpreted.
'InterpretMSSpectrum' provides a set of functions to perform such tasks for
Electrospray-Ionization and Atmospheric-Pressure-Chemical-Ionization derived
data in positive and negative ionization mode.
Author: Jan Lisec [aut, cre] ,
Jaeger Carsten [aut]
Maintainer: Jan Lisec <jan.lisec@bam.de>
Diff between InterpretMSSpectrum versions 1.5.2 dated 2025-12-03 and 1.5.3 dated 2026-04-10
DESCRIPTION | 10 - MD5 | 20 +- R/PlotSpec.R | 55 +++++-- R/utils.R |only README.md | 44 ++++- man/PlotSpec.Rd | 29 ++- man/figures/README-exmpl1-1.png |binary man/figures/README-exmpl2-1.png |binary man/figures/README-exmpl4-1.png |only tests/testthat/_snaps/PlotSpec/plotspec-01.svg | 125 +++++++++------- tests/testthat/_snaps/PlotSpec/plotspec-02.svg | 104 +++++++------ tests/testthat/_snaps/findMAIN/findmain-plot-01.svg | 150 +++++++++----------- 12 files changed, 313 insertions(+), 224 deletions(-)
More information about InterpretMSSpectrum at CRAN
Permanent link
Title: Rounded Bar Plots
Description: Creates bar plots with rounded corners using 'ggplot2'.
The code in this package was adapted from a solution provided by
Stack Overflow user 'sthoch' in the following post
<https://stackoverflow.com/questions/62176038/r-ggplot2-bar-chart-with-round-corners-on-top-of-bar>.
Author: Botan Agin [aut, cre, cph]
Maintainer: Botan Agin <aginbotan@gmail.com>
Diff between ggrounded versions 0.0.3 dated 2023-05-11 and 0.1.0 dated 2026-04-10
DESCRIPTION | 14 - MD5 | 41 ++- NAMESPACE | 1 NEWS.md | 8 R/geom-bar-rounded.R | 4 R/geom-col-rounded.R | 63 ++-- R/geom-histogram-rounded.R |only R/utils.R | 127 +++++++++- README.md | 43 +++ man/figures/README-example1-1.png |binary man/figures/README-example2-1.png |binary man/figures/README-example3-1.png |only man/figures/README-example4-1.png |only man/figures/README-unnamed-chunk-4-1.png |only man/figures/logo.png |only man/geom_col_rounded.Rd | 11 man/geom_histogram_rounded.Rd |only tests/testthat/_snaps/geom-bar-rounded/geom-bar-rounded-max.svg |only tests/testthat/_snaps/geom-bar-rounded/geom-bar-rounded.svg | 14 - tests/testthat/_snaps/geom-col-rounded/geom-col-rounded-dense.svg |only tests/testthat/_snaps/geom-col-rounded/geom-col-rounded-max.svg |only tests/testthat/_snaps/geom-col-rounded/geom-col-rounded-negative.svg |only tests/testthat/_snaps/geom-col-rounded/geom-col-rounded-square.svg |only tests/testthat/_snaps/geom-col-rounded/geom-col-rounded.svg | 6 tests/testthat/test-geom-bar-rounded.R | 6 tests/testthat/test-geom-col-rounded.R | 27 ++ tests/testthat/test-geom-histogram-rounded.R |only tests/testthat/test-radius.R |only 28 files changed, 296 insertions(+), 69 deletions(-)
Title: Make 'PICRUSt2' Output Analysis and Visualization Easier
Description: Provides a convenient way to analyze and visualize 'PICRUSt2' output with pre-defined plots and functions. Allows for generating statistical plots about microbiome functional predictions and offers customization options. Features a one-click option for creating publication-level plots, saving time and effort in producing professional-grade figures. Streamlines the 'PICRUSt2' analysis and visualization process. For more details, see Yang et al. (2023) <doi:10.1093/bioinformatics/btad470>.
Author: Chen Yang [aut, cre],
Liangliang Zhang [aut]
Maintainer: Chen Yang <cafferychen7850@gmail.com>
Diff between ggpicrust2 versions 2.5.10 dated 2026-02-12 and 2.5.12 dated 2026-04-10
ggpicrust2-2.5.10/ggpicrust2/tests/testthat/Rplots.pdf |only ggpicrust2-2.5.12/ggpicrust2/DESCRIPTION | 17 ggpicrust2-2.5.12/ggpicrust2/MD5 | 28 ggpicrust2-2.5.12/ggpicrust2/NAMESPACE | 5 ggpicrust2-2.5.12/ggpicrust2/NEWS.md | 20 ggpicrust2-2.5.12/ggpicrust2/R/pathway_daa.R | 18 ggpicrust2-2.5.12/ggpicrust2/R/taxa_contribution.R |only ggpicrust2-2.5.12/ggpicrust2/R/taxa_contribution_viz.R |only ggpicrust2-2.5.12/ggpicrust2/README.md | 1681 +++------- ggpicrust2-2.5.12/ggpicrust2/build/vignette.rds |binary ggpicrust2-2.5.12/ggpicrust2/inst/doc/using_ggpicrust2.R |only ggpicrust2-2.5.12/ggpicrust2/inst/doc/using_ggpicrust2.Rmd |only ggpicrust2-2.5.12/ggpicrust2/inst/doc/using_ggpicrust2.html |only ggpicrust2-2.5.12/ggpicrust2/man/aggregate_taxa_contributions.Rd |only ggpicrust2-2.5.12/ggpicrust2/man/figures/logo.png |only ggpicrust2-2.5.12/ggpicrust2/man/ko_to_go_reference.Rd | 4 ggpicrust2-2.5.12/ggpicrust2/man/read_contrib_file.Rd |only ggpicrust2-2.5.12/ggpicrust2/man/read_strat_file.Rd |only ggpicrust2-2.5.12/ggpicrust2/man/taxa_contribution_bar.Rd |only ggpicrust2-2.5.12/ggpicrust2/man/taxa_contribution_heatmap.Rd |only ggpicrust2-2.5.12/ggpicrust2/tests/testthat/test-taxa_contribution.R |only ggpicrust2-2.5.12/ggpicrust2/vignettes/using_ggpicrust2.Rmd |only 22 files changed, 654 insertions(+), 1119 deletions(-)
Title: Species Trait Data from Around the Web
Description: Species trait data from many sources, including sequence data
from NCBI (<https://www.ncbi.nlm.nih.gov/>), plant traits from BETYdb,
and data from EOL Traitbank and BirdLife International.
Author: David LeBauer [aut, cre] ,
Scott Chamberlain [aut, cph] ,
Zachary Foster [aut],
Ignasi Bartomeus [aut],
Chris Black [aut],
David Harris [aut],
Rupert Collins [ctb]
Maintainer: David LeBauer <dlebauer@gmail.com>
This is a re-admission after prior archival of version 0.5.1 dated 2024-05-17
Diff between traits versions 0.5.1 dated 2024-05-17 and 0.6.0 dated 2026-04-10
traits-0.5.1/traits/R/coral.R |only traits-0.5.1/traits/R/eol_invasive.R |only traits-0.5.1/traits/R/fe_native.R |only traits-0.5.1/traits/R/g_invasive.R |only traits-0.5.1/traits/R/is_native.R |only traits-0.5.1/traits/R/tr_usda.R |only traits-0.5.1/traits/man/coral-defunct.Rd |only traits-0.5.1/traits/man/eol_invasive_-defunct.Rd |only traits-0.5.1/traits/man/fe_native-defunct.Rd |only traits-0.5.1/traits/man/g_invasive-defunct.Rd |only traits-0.5.1/traits/man/is_native-defunct.Rd |only traits-0.5.1/traits/man/tr_usda-defunct.Rd |only traits-0.6.0/traits/DESCRIPTION | 51 +-- traits-0.6.0/traits/MD5 | 82 ++---- traits-0.6.0/traits/NAMESPACE | 11 traits-0.6.0/traits/NEWS.md | 30 ++ traits-0.6.0/traits/R/betydb.R | 270 +++++++++++--------- traits-0.6.0/traits/R/birdlife.R | 32 +- traits-0.6.0/traits/R/caching.R | 5 traits-0.6.0/traits/R/leda.R | 57 ++-- traits-0.6.0/traits/R/ncbi_byid.R | 18 - traits-0.6.0/traits/R/ncbi_byname.R | 92 +++++- traits-0.6.0/traits/R/ncbi_searcher.R | 76 +++-- traits-0.6.0/traits/R/taxa_search.R | 32 ++ traits-0.6.0/traits/R/tr_ernest.R | 19 - traits-0.6.0/traits/R/tr_zanne.R | 19 - traits-0.6.0/traits/R/traitbank.R | 42 +-- traits-0.6.0/traits/R/traits-package.r | 5 traits-0.6.0/traits/README.md | 245 ++++++++++++++---- traits-0.6.0/traits/build/vignette.rds |binary traits-0.6.0/traits/inst/CITATION |only traits-0.6.0/traits/inst/doc/betydb.html | 5 traits-0.6.0/traits/inst/doc/traits.html | 5 traits-0.6.0/traits/man/betydb.Rd | 57 ++-- traits-0.6.0/traits/man/betydb_query.Rd | 41 +-- traits-0.6.0/traits/man/birdlife_habitat.Rd | 15 - traits-0.6.0/traits/man/birdlife_threats.Rd | 15 - traits-0.6.0/traits/man/leda.Rd | 58 ++-- traits-0.6.0/traits/man/ncbi_byid.Rd | 15 - traits-0.6.0/traits/man/ncbi_byname.Rd | 22 + traits-0.6.0/traits/man/ncbi_searcher.Rd | 81 +++--- traits-0.6.0/traits/man/taxa_search.Rd | 9 traits-0.6.0/traits/man/tr_ernest.Rd | 18 - traits-0.6.0/traits/man/tr_zanne.Rd | 18 - traits-0.6.0/traits/man/traitbank.Rd | 37 +- traits-0.6.0/traits/man/traits-package.Rd | 22 - traits-0.6.0/traits/man/traits_cache.Rd | 5 traits-0.6.0/traits/tests/testthat/test-ncbi.R |only traits-0.6.0/traits/tests/testthat/test-traitbank.R | 27 ++ 49 files changed, 962 insertions(+), 574 deletions(-)
Title: 2x2, 3x3 and Nxn Space-Filling Curves
Description: Implementation of all possible forms of 2x2 and 3x3 space-filling curves,
i.e., the generalized forms of the Hilbert curve <https://en.wikipedia.org/wiki/Hilbert_curve>,
the Peano curve <https://en.wikipedia.org/wiki/Peano_curve> and the Peano curve in the
meander type (Figure 5 in <https://eudml.org/doc/141086>). It can generates nxn curves expanded from
any specific level-1 units. It also implements the H-curve and the three-dimensional Hilbert curve.
See <doi:10.48550/arXiv.2412.16962> for more details.
Author: Zuguang Gu [aut, cre]
Maintainer: Zuguang Gu <guzuguang@suat-sz.edu.cn>
Diff between sfcurve versions 1.0.0 dated 2024-09-13 and 1.0.1 dated 2026-04-10
DESCRIPTION | 17 ++++---- LICENSE | 2 - MD5 | 80 ++++++++++++++++++++--------------------- R/hilbert_3d.R | 2 + R/sfc_generator.R | 4 +- inst/doc/sfcurve.Rmd | 2 - inst/doc/sfcurve.html | 8 ++-- man/base_patterns.Rd | 6 +-- man/draw_multiple_curves.Rd | 14 +++---- man/draw_rules.Rd | 2 - man/h_curve.Rd | 17 ++++---- man/hilbert_3d.Rd | 2 + man/level1_unit_orientation.Rd | 14 +++---- man/plot_segments.Rd | 4 +- man/pre_defined_rules.Rd | 12 +++--- man/sfc_3x3_combined.Rd | 10 ++--- man/sfc_4x4_meander.Rd | 16 ++++---- man/sfc_apply.Rd | 12 +++--- man/sfc_base.Rd | 27 ++++++------- man/sfc_expand.Rd | 8 ++-- man/sfc_expand_by_rules.Rd | 12 +++--- man/sfc_flip_unit.Rd | 22 +++++------ man/sfc_generator.Rd | 11 ++--- man/sfc_grob.Rd | 16 ++++---- man/sfc_index.Rd | 20 +++++----- man/sfc_is_compatible.Rd | 10 ++--- man/sfc_level.Rd | 2 - man/sfc_previous_point.Rd | 2 - man/sfc_reduce.Rd | 8 ++-- man/sfc_rules.Rd | 41 ++++++++++----------- man/sfc_segments.Rd | 8 ++-- man/sfc_sequence.Rd | 8 ++-- man/sfc_shape.Rd | 57 +++++++++++++---------------- man/sfc_transformation.Rd | 26 ++++++------- man/sfc_validate.Rd | 4 +- man/sfcurve-package.Rd | 6 +-- man/spacefilling.Rd | 34 +++++++---------- man/standard_curve.Rd | 4 +- man/traverse_path.Rd | 18 ++++----- man/utility.Rd | 12 +++--- vignettes/sfcurve.Rmd | 2 - 41 files changed, 289 insertions(+), 293 deletions(-)
Title: Synthetic Control Changes-in-Changes Estimator
Description: Implements the Changes-in-Changes (CIC) estimator of Athey and
Imbens (2006) <doi:10.1111/j.1468-0262.2006.00668.x> combined with
synthetic control methods. Provides both the continuous CIC estimator
(Theorem 3.1) and the discrete CIC estimator (Theorem 4.1) for
integer-valued outcomes, with analytic and bootstrap inference.
Also provides nonparametric estimation of the entire counterfactual
distribution of outcomes for a treated group, allowing evaluation of
average, quantile, and distributional treatment effects. Synthetic
control weights are constructed via elastic net regularization to
handle settings with many potential control units.
Author: Neil Hwang [aut, cre]
Maintainer: Neil Hwang <neil.hwang@bcc.cuny.edu>
Diff between sccic versions 0.1.0 dated 2026-04-09 and 0.1.1 dated 2026-04-10
DESCRIPTION | 19 MD5 | 24 NEWS.md |only R/cic.R | 43 - R/ecdf_utils.R | 81 ++ inst/doc/sccic-intro.R | 19 inst/doc/sccic-intro.Rmd | 30 inst/doc/sccic-intro.html | 1600 +--------------------------------------------- man/cic.Rd | 16 man/compute_cic_cf.Rd |only man/ecdf_eval_left.Rd |only man/integral_quantile.Rd |only man/sccic-package.Rd | 2 tests/testthat/test-cic.R | 84 ++ vignettes/sccic-intro.Rmd | 30 15 files changed, 349 insertions(+), 1599 deletions(-)
Title: Fitting and Analysing Thermal Performance Curves
Description: Helps to fit thermal performance curves (TPCs). 'rTPC' contains 49 model formulations previously used to fit TPCs and has helper functions to set sensible start parameters, upper and lower parameter limits and estimate parameters useful in downstream analyses, such as cardinal temperatures, maximum rate and optimum temperature. See Padfield et al. (2021) <doi:10.1111/2041-210X.13585>.
Author: Daniel Padfield [aut, cre],
Hannah O'Sullivan [aut],
Francis Windram [aut]
Maintainer: Daniel Padfield <d.padfield@exeter.ac.uk>
Diff between rTPC versions 1.0.4 dated 2023-08-17 and 1.1.0 dated 2026-04-10
rTPC-1.0.4/rTPC/R/lrf_1991.R |only rTPC-1.0.4/rTPC/R/modifiedgaussian_2006.R |only rTPC-1.0.4/rTPC/man/lrf_1991.Rd |only rTPC-1.0.4/rTPC/man/modifiedgaussian_2006.Rd |only rTPC-1.0.4/rTPC/tests/testthat/test-lrf_1991.R |only rTPC-1.0.4/rTPC/tests/testthat/test-modifiedgaussian_2006.R |only rTPC-1.1.0/rTPC/DESCRIPTION | 35 rTPC-1.1.0/rTPC/MD5 | 344 +- rTPC-1.1.0/rTPC/NAMESPACE | 28 rTPC-1.1.0/rTPC/NEWS.md | 32 rTPC-1.1.0/rTPC/R/analytiskontodimas_2004.R |only rTPC-1.1.0/rTPC/R/ashrafi1_2018.R |only rTPC-1.1.0/rTPC/R/ashrafi2_2018.R |only rTPC-1.1.0/rTPC/R/ashrafi3_2018.R |only rTPC-1.1.0/rTPC/R/ashrafi4_2018.R |only rTPC-1.1.0/rTPC/R/ashrafi5_2018.R |only rTPC-1.1.0/rTPC/R/atkin_2005.R |only rTPC-1.1.0/rTPC/R/beta_2012.R | 28 rTPC-1.1.0/rTPC/R/betatypesimplified_2008.R |only rTPC-1.1.0/rTPC/R/boatman_2017.R | 28 rTPC-1.1.0/rTPC/R/briere1.R |only rTPC-1.1.0/rTPC/R/briere1simplified_1999.R |only rTPC-1.1.0/rTPC/R/briere2_1999.R | 26 rTPC-1.1.0/rTPC/R/briere2simplified_1999.R |only rTPC-1.1.0/rTPC/R/briereextended_2021.R |only rTPC-1.1.0/rTPC/R/briereextendedsimplified_2021.R |only rTPC-1.1.0/rTPC/R/calc_params.R | 6 rTPC-1.1.0/rTPC/R/data.R | 2 rTPC-1.1.0/rTPC/R/delong_2017.R | 42 rTPC-1.1.0/rTPC/R/deutsch_2008.R | 29 rTPC-1.1.0/rTPC/R/eubank_1973.R |only rTPC-1.1.0/rTPC/R/flextpc_2024.R |only rTPC-1.1.0/rTPC/R/flinn_1991.R | 24 rTPC-1.1.0/rTPC/R/gaussian_1987.R | 25 rTPC-1.1.0/rTPC/R/gaussianmodified_2006.R |only rTPC-1.1.0/rTPC/R/get_breadth.R | 2 rTPC-1.1.0/rTPC/R/get_ctmax.R | 1 rTPC-1.1.0/rTPC/R/get_ctmin.R | 2 rTPC-1.1.0/rTPC/R/get_e.R | 1 rTPC-1.1.0/rTPC/R/get_eh.R | 1 rTPC-1.1.0/rTPC/R/get_lower_lims.R | 246 - rTPC-1.1.0/rTPC/R/get_model_names.R | 73 rTPC-1.1.0/rTPC/R/get_q10.R | 1 rTPC-1.1.0/rTPC/R/get_rmax.R | 1 rTPC-1.1.0/rTPC/R/get_skewness.R | 1 rTPC-1.1.0/rTPC/R/get_start_vals.R | 264 - rTPC-1.1.0/rTPC/R/get_thermalsafetymargin.R | 2 rTPC-1.1.0/rTPC/R/get_thermaltolerance.R | 2 rTPC-1.1.0/rTPC/R/get_topt.R | 2 rTPC-1.1.0/rTPC/R/get_tpc_as_formula.R |only rTPC-1.1.0/rTPC/R/get_upper_lims.R | 248 - rTPC-1.1.0/rTPC/R/hinshelwood_1947.R | 25 rTPC-1.1.0/rTPC/R/janisch1_1925.R |only rTPC-1.1.0/rTPC/R/janisch2_1925.R |only rTPC-1.1.0/rTPC/R/joehnk_2008.R | 31 rTPC-1.1.0/rTPC/R/johnsonlewin_1946.R | 30 rTPC-1.1.0/rTPC/R/kamykowski_1985.R | 32 rTPC-1.1.0/rTPC/R/lactin2_1995.R | 27 rTPC-1.1.0/rTPC/R/lobry_1991.R |only rTPC-1.1.0/rTPC/R/mitchell_2009.R |only rTPC-1.1.0/rTPC/R/oneill_1972.R | 28 rTPC-1.1.0/rTPC/R/pawar_2018.R | 30 rTPC-1.1.0/rTPC/R/quadratic_2008.R | 21 rTPC-1.1.0/rTPC/R/quickfit_tpc.R |only rTPC-1.1.0/rTPC/R/quickfit_tpc_multi.R |only rTPC-1.1.0/rTPC/R/ratkowsky_1983.R | 25 rTPC-1.1.0/rTPC/R/rezende_2019.R | 26 rTPC-1.1.0/rTPC/R/rosso_1993.R |only rTPC-1.1.0/rTPC/R/sharpeschoolfull_1981.R | 36 rTPC-1.1.0/rTPC/R/sharpeschoolhigh_1981.R | 30 rTPC-1.1.0/rTPC/R/sharpeschoollow_1981.R | 29 rTPC-1.1.0/rTPC/R/spain_1982.R | 25 rTPC-1.1.0/rTPC/R/stinner_1974.R |only rTPC-1.1.0/rTPC/R/taylorsexton_1972.R |only rTPC-1.1.0/rTPC/R/thomas_2012.R | 34 rTPC-1.1.0/rTPC/R/thomas_2017.R | 28 rTPC-1.1.0/rTPC/R/tomlinsonphillips_2015.R |only rTPC-1.1.0/rTPC/R/warrendreyer_2006.R |only rTPC-1.1.0/rTPC/R/weibull_1995.R | 24 rTPC-1.1.0/rTPC/README.md | 50 rTPC-1.1.0/rTPC/build/vignette.rds |binary rTPC-1.1.0/rTPC/inst/doc/adding_models.R |only rTPC-1.1.0/rTPC/inst/doc/adding_models.Rmd |only rTPC-1.1.0/rTPC/inst/doc/adding_models.html |only rTPC-1.1.0/rTPC/inst/doc/bootstrapping_many_curves.R | 237 + rTPC-1.1.0/rTPC/inst/doc/bootstrapping_many_curves.Rmd | 246 + rTPC-1.1.0/rTPC/inst/doc/bootstrapping_many_curves.html | 425 +- rTPC-1.1.0/rTPC/inst/doc/bootstrapping_models.R | 363 +- rTPC-1.1.0/rTPC/inst/doc/bootstrapping_models.Rmd | 369 +- rTPC-1.1.0/rTPC/inst/doc/bootstrapping_models.html | 705 ++-- rTPC-1.1.0/rTPC/inst/doc/fit_many_curves.R | 117 rTPC-1.1.0/rTPC/inst/doc/fit_many_curves.Rmd | 136 rTPC-1.1.0/rTPC/inst/doc/fit_many_curves.html | 196 - rTPC-1.1.0/rTPC/inst/doc/fit_many_models.R | 1597 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rTPC-1.1.0/rTPC/man/ashrafi2_2018.Rd |only rTPC-1.1.0/rTPC/man/ashrafi3_2018.Rd |only rTPC-1.1.0/rTPC/man/ashrafi4_2018.Rd |only rTPC-1.1.0/rTPC/man/ashrafi5_2018.Rd |only rTPC-1.1.0/rTPC/man/atkin_2005.Rd |only rTPC-1.1.0/rTPC/man/bacteria_tpc.Rd | 1 rTPC-1.1.0/rTPC/man/beta_2012.Rd | 1 rTPC-1.1.0/rTPC/man/betatypesimplified_2008.Rd |only rTPC-1.1.0/rTPC/man/boatman_2017.Rd | 1 rTPC-1.1.0/rTPC/man/briere1_1999.Rd |only rTPC-1.1.0/rTPC/man/briere1simplified_1999.Rd |only rTPC-1.1.0/rTPC/man/briere2_1999.Rd | 5 rTPC-1.1.0/rTPC/man/briere2simplified_1999.Rd |only rTPC-1.1.0/rTPC/man/briereextended_2021.Rd |only rTPC-1.1.0/rTPC/man/briereextendedsimplified_2021.Rd |only rTPC-1.1.0/rTPC/man/calc_params.Rd | 5 rTPC-1.1.0/rTPC/man/chlorella_tpc.Rd | 1 rTPC-1.1.0/rTPC/man/delong_2017.Rd | 1 rTPC-1.1.0/rTPC/man/deutsch_2008.Rd | 1 rTPC-1.1.0/rTPC/man/eubank_1973.Rd |only rTPC-1.1.0/rTPC/man/figures/logo.png |only rTPC-1.1.0/rTPC/man/figures/rTPC_hex_sticker.png |only rTPC-1.1.0/rTPC/man/figures/rTPC_pipeline.png |binary rTPC-1.1.0/rTPC/man/figures/rTPC_pipeline_extensions.png |binary rTPC-1.1.0/rTPC/man/flextpc_2024.Rd |only rTPC-1.1.0/rTPC/man/flinn_1991.Rd | 1 rTPC-1.1.0/rTPC/man/gaussian_1987.Rd | 1 rTPC-1.1.0/rTPC/man/gaussianmodified_2006.Rd |only rTPC-1.1.0/rTPC/man/get_breadth.Rd | 1 rTPC-1.1.0/rTPC/man/get_ctmax.Rd | 1 rTPC-1.1.0/rTPC/man/get_ctmin.Rd | 1 rTPC-1.1.0/rTPC/man/get_e.Rd | 1 rTPC-1.1.0/rTPC/man/get_eh.Rd | 1 rTPC-1.1.0/rTPC/man/get_lower_lims.Rd | 3 rTPC-1.1.0/rTPC/man/get_model_names.Rd | 18 rTPC-1.1.0/rTPC/man/get_q10.Rd | 1 rTPC-1.1.0/rTPC/man/get_rmax.Rd | 1 rTPC-1.1.0/rTPC/man/get_skewness.Rd | 1 rTPC-1.1.0/rTPC/man/get_start_vals.Rd | 3 rTPC-1.1.0/rTPC/man/get_thermalsafetymargin.Rd | 1 rTPC-1.1.0/rTPC/man/get_thermaltolerance.Rd | 1 rTPC-1.1.0/rTPC/man/get_topt.Rd | 1 rTPC-1.1.0/rTPC/man/get_tpc_as_formula.Rd |only rTPC-1.1.0/rTPC/man/get_upper_lims.Rd | 3 rTPC-1.1.0/rTPC/man/hinshelwood_1947.Rd | 1 rTPC-1.1.0/rTPC/man/janisch1_1925.Rd |only rTPC-1.1.0/rTPC/man/janisch2_1925.Rd |only rTPC-1.1.0/rTPC/man/joehnk_2008.Rd | 1 rTPC-1.1.0/rTPC/man/johnsonlewin_1946.Rd | 1 rTPC-1.1.0/rTPC/man/kamykowski_1985.Rd | 1 rTPC-1.1.0/rTPC/man/lactin2_1995.Rd | 1 rTPC-1.1.0/rTPC/man/lobry_1991.Rd |only rTPC-1.1.0/rTPC/man/mitchell_2009.Rd |only rTPC-1.1.0/rTPC/man/oneill_1972.Rd | 1 rTPC-1.1.0/rTPC/man/pawar_2018.Rd | 1 rTPC-1.1.0/rTPC/man/quadratic_2008.Rd | 1 rTPC-1.1.0/rTPC/man/quickfit_tpc.Rd |only rTPC-1.1.0/rTPC/man/quickfit_tpc_multi.Rd |only rTPC-1.1.0/rTPC/man/ratkowsky_1983.Rd | 1 rTPC-1.1.0/rTPC/man/rezende_2019.Rd | 1 rTPC-1.1.0/rTPC/man/rosso_1993.Rd |only rTPC-1.1.0/rTPC/man/sharpeschoolfull_1981.Rd | 1 rTPC-1.1.0/rTPC/man/sharpeschoolhigh_1981.Rd | 1 rTPC-1.1.0/rTPC/man/sharpeschoollow_1981.Rd | 1 rTPC-1.1.0/rTPC/man/spain_1982.Rd | 1 rTPC-1.1.0/rTPC/man/stinner_1974.Rd |only rTPC-1.1.0/rTPC/man/taylorsexton_1972.Rd |only rTPC-1.1.0/rTPC/man/thomas_2012.Rd | 9 rTPC-1.1.0/rTPC/man/thomas_2017.Rd | 1 rTPC-1.1.0/rTPC/man/tomlinsonphillips_2015.Rd |only rTPC-1.1.0/rTPC/man/warrendreyer_2006.Rd |only rTPC-1.1.0/rTPC/man/weibull_1995.Rd | 1 rTPC-1.1.0/rTPC/tests/testthat/test-analytiskontodimas_2004.R |only rTPC-1.1.0/rTPC/tests/testthat/test-ashrafi1_2018.R |only rTPC-1.1.0/rTPC/tests/testthat/test-ashrafi2_2018.R |only rTPC-1.1.0/rTPC/tests/testthat/test-ashrafi3_2018.R |only rTPC-1.1.0/rTPC/tests/testthat/test-ashrafi4_2018.R |only rTPC-1.1.0/rTPC/tests/testthat/test-ashrafi5_2018.R |only rTPC-1.1.0/rTPC/tests/testthat/test-atkin_2005.R |only rTPC-1.1.0/rTPC/tests/testthat/test-betatypesimplified_2008.R |only rTPC-1.1.0/rTPC/tests/testthat/test-boatman_2017.R | 2 rTPC-1.1.0/rTPC/tests/testthat/test-briere1.R |only rTPC-1.1.0/rTPC/tests/testthat/test-briere1simplified_1999.R |only rTPC-1.1.0/rTPC/tests/testthat/test-briere2simplified_1999.R |only rTPC-1.1.0/rTPC/tests/testthat/test-briereextended_2021.R |only rTPC-1.1.0/rTPC/tests/testthat/test-briereextendedsimplified_2021.R |only rTPC-1.1.0/rTPC/tests/testthat/test-eubank_1973.R |only rTPC-1.1.0/rTPC/tests/testthat/test-flextpc_2024.R |only rTPC-1.1.0/rTPC/tests/testthat/test-gaussianmodified_2006.R |only rTPC-1.1.0/rTPC/tests/testthat/test-janisch1_1925.R |only rTPC-1.1.0/rTPC/tests/testthat/test-janisch2_1925.R |only rTPC-1.1.0/rTPC/tests/testthat/test-mitchell_2009.R |only rTPC-1.1.0/rTPC/tests/testthat/test-rosso_1993.R |only rTPC-1.1.0/rTPC/tests/testthat/test-spain_1982.R | 2 rTPC-1.1.0/rTPC/tests/testthat/test-startingvalues.R |only rTPC-1.1.0/rTPC/tests/testthat/test-stinner_1974.R |only rTPC-1.1.0/rTPC/tests/testthat/test-taylorsexton_1972.R |only rTPC-1.1.0/rTPC/tests/testthat/test-tomlinsonphillips_2015.R |only rTPC-1.1.0/rTPC/tests/testthat/test-warrendreyer_2006.R |only rTPC-1.1.0/rTPC/vignettes/adding_models.Rmd |only rTPC-1.1.0/rTPC/vignettes/bootstrapping_many_curves.Rmd | 246 + rTPC-1.1.0/rTPC/vignettes/bootstrapping_models.Rmd | 369 +- rTPC-1.1.0/rTPC/vignettes/fit_many_curves.Rmd | 136 rTPC-1.1.0/rTPC/vignettes/fit_many_models.Rmd | 1620 ++++++++- rTPC-1.1.0/rTPC/vignettes/model_averaging_selection.Rmd | 336 +- rTPC-1.1.0/rTPC/vignettes/model_weighting.Rmd | 5 rTPC-1.1.0/rTPC/vignettes/quickfit_parallel.Rmd |only rTPC-1.1.0/rTPC/vignettes/rTPC.Rmd | 72 rTPC-1.1.0/rTPC/vignettes/weighted_bootstrapping.Rmd | 15 221 files changed, 10541 insertions(+), 3721 deletions(-)
Title: Pattern Causality Analysis
Description: Infer causation from observational data through pattern causality analysis (PC), with original algorithm for time series data from Stavroglou et al. (2020) <doi:10.1073/pnas.1918269117>, as well as methodological extensions for spatial cross-sectional data introduced by Zhang & Wang (2025) <doi:10.1080/13658816.2025.2581207>, together with a systematic description proposed in Lyu et al. (2026) <doi:10.1016/j.compenvurbsys.2026.102435>.
Author: Wenbo Lyu [aut, cre, cph]
Maintainer: Wenbo Lyu <lyu.geosocial@gmail.com>
Diff between pc versions 0.1 dated 2026-03-30 and 0.2 dated 2026-04-10
DESCRIPTION | 10 MD5 | 54 +-- NAMESPACE | 4 NEWS.md | 26 + R/Agenerics.R | 2 R/RcppExports.R | 8 R/fnn.R |only R/formatoutput.R | 86 ++++- R/globals.R |only R/internal_utility.R | 43 ++ R/ops.R | 138 ++++---- R/pc-package.R | 8 R/pc.R | 69 ++-- R/zzz.R | 2 README.md | 46 +- inst/CITATION | 2 inst/case |only inst/include/pc.h | 2 inst/include/pc/distance.hpp | 18 - inst/include/pc/fnn.hpp |only inst/include/pc/neighbor.hpp |only inst/include/pc/patcaus.hpp | 116 +++++-- inst/include/pc/projection.hpp | 2 inst/include/pc/symdync.hpp | 136 ++++---- man/figures/pc.png |binary man/fnn.Rd |only man/ops.Rd | 29 + man/pc.Rd | 57 ++- src/FNN.cpp |only src/PC.cpp | 667 ++++++++++++++++++++++++++++++++--------- src/RcppExports.cpp | 32 + 31 files changed, 1110 insertions(+), 447 deletions(-)
Title: Discounted Cash Flow Tools for Commercial Real Estate
Description: Provides 'R' utilities to build unlevered and levered discounted cash
flow (DCF) tables for commercial real estate (CRE) assets. Functions generate
bullet and amortising debt schedules, compute credit metrics such as debt
service coverage ratios (DSCR), debt yield ratios, and forward loan-to-value
ratios (LTV), and expose an explicit property-level operating chain from gross
effective income (GEI) to net operating income (NOI) and property before-tax
cash flow (PBTCF). The toolkit supports end-to-end scenario execution from a
YAML (YAML Ain't Markup Language) configuration file parsed with 'yaml',
includes helpers for effective rent, constrained loan underwriting, and
simplified SPV-level tax simulations, and ships reproducible vignettes for
methodological and applied use cases.
Author: Kevin Poisson [aut, cre]
Maintainer: Kevin Poisson <kevin.poisson@parisgeo.cnrs.fr>
Diff between cre.dcf versions 0.0.3 dated 2026-01-12 and 0.0.5 dated 2026-04-10
DESCRIPTION | 27 MD5 | 183 ++++-- NAMESPACE | 29 + NEWS.md |only R/config.R | 468 +---------------- R/dcf.R | 407 +++++++++++--- R/debt.R | 141 +++++ R/engine_v3.R |only R/globals.R | 2 R/ratios.r | 218 +++++-- R/scenario_refi.R | 6 R/simple_api.R |only R/tax.R |only R/utils.R | 142 +++-- build/vignette.rds |binary inst/doc/analyst-cheat-sheet.R |only inst/doc/analyst-cheat-sheet.Rmd |only inst/doc/analyst-cheat-sheet.html |only inst/doc/before-tax-by-design.R |only inst/doc/before-tax-by-design.Rmd |only inst/doc/before-tax-by-design.html |only inst/doc/cre-glossary.html | 4 inst/doc/credit-structures-bullet-vs-amort.R | 72 -- inst/doc/credit-structures-bullet-vs-amort.Rmd | 95 +-- inst/doc/credit-structures-bullet-vs-amort.html | 251 +++------ inst/doc/french-investment-tax-impact.R |only inst/doc/french-investment-tax-impact.Rmd |only inst/doc/french-investment-tax-impact.html |only inst/doc/from-lease-roll-to-dcf.R |only inst/doc/from-lease-roll-to-dcf.Rmd |only inst/doc/from-lease-roll-to-dcf.html |only inst/doc/getting-started.R | 57 -- inst/doc/getting-started.Rmd | 94 +-- inst/doc/getting-started.html | 302 ++++------ inst/doc/investment-styles-panorama.R | 32 - inst/doc/investment-styles-panorama.Rmd | 139 ++--- inst/doc/investment-styles-panorama.html | 659 ++++++++++++------------ inst/doc/leases-effective-rent.R | 29 - inst/doc/leases-effective-rent.Rmd | 72 +- inst/doc/leases-effective-rent.html | 227 ++++---- inst/doc/methodological-foundations.R |only inst/doc/methodological-foundations.Rmd |only inst/doc/methodological-foundations.html |only inst/doc/reproducibility.R | 4 inst/doc/reproducibility.Rmd | 34 - inst/doc/reproducibility.html | 62 -- inst/doc/sensitivity-sweeps.R | 19 inst/doc/sensitivity-sweeps.Rmd | 61 -- inst/doc/sensitivity-sweeps.html | 150 ++--- inst/doc/start-in-5-lines.R |only inst/doc/start-in-5-lines.Rmd |only inst/doc/start-in-5-lines.html |only inst/doc/studycase_buyside.R | 3 inst/doc/studycase_buyside.Rmd | 26 inst/doc/studycase_buyside.html | 195 +++---- inst/doc/yaml-validation.Rmd | 13 inst/doc/yaml-validation.html | 34 - inst/extdata/preset_core.yml | 5 inst/extdata/preset_core_plus.yml | 11 inst/extdata/preset_opportunistic.yml | 21 inst/extdata/preset_value_added.yml | 16 man/analyze_deal.Rd |only man/asset_snapshot.Rd |only man/cf_make_full_table.Rd | 3 man/cfg_missing.Rd | 2 man/cfg_normalize.Rd | 2 man/compare_financing_scenarios.Rd | 8 man/dcf_add_noi_columns.Rd | 7 man/dcf_calculate.Rd | 25 man/deal_cashflows.Rd |only man/deal_spec.Rd |only man/deal_to_config.Rd |only man/debt_terms.Rd |only man/depreciation_spec.Rd |only man/interest_rule.Rd |only man/lease_effective_rent.Rd |only man/lease_event.Rd |only man/lease_roll.Rd |only man/lease_roll_snapshot.Rd |only man/lease_unit.Rd |only man/load_style_preset.Rd | 6 man/loss_rule.Rd |only man/project_terminal_noi.Rd |only man/renewal_event.Rd |only man/run_case.Rd | 7 man/styles_break_even_exit_yield.Rd | 6 man/styles_distressed_exit.Rd | 24 man/styles_growth_sensitivity.Rd | 8 man/styles_manifest.Rd | 21 man/summarize_case.Rd | 2 man/tax_basis_spv.Rd |only man/tax_run_spv.Rd |only man/tax_spec_spv.Rd |only man/test_refi.Rd | 4 man/underwrite_loan.Rd |only man/vacancy_event.Rd |only tests/testthat/test-cf-merge.R | 20 tests/testthat/test-engine-v3.R |only tests/testthat/test-methodological-helpers.R |only tests/testthat/test-ratios.R | 37 + tests/testthat/test-run-case-consistency.R |only tests/testthat/test-simple-api.R |only tests/testthat/test_dcf_calculate.R | 105 +++ tests/testthat/test_styles_preset.R | 167 +++++- tools/test_vanilla.R |only vignettes/analyst-cheat-sheet.Rmd |only vignettes/before-tax-by-design.Rmd |only vignettes/credit-structures-bullet-vs-amort.Rmd | 95 +-- vignettes/french-investment-tax-impact.Rmd |only vignettes/from-lease-roll-to-dcf.Rmd |only vignettes/getting-started.Rmd | 94 +-- vignettes/investment-styles-panorama.Rmd | 139 ++--- vignettes/leases-effective-rent.Rmd | 72 +- vignettes/manual-foundations.bib |only vignettes/methodological-foundations.Rmd |only vignettes/reproducibility.Rmd | 34 - vignettes/sensitivity-sweeps.Rmd | 61 -- vignettes/start-in-5-lines.Rmd |only vignettes/studycase_buyside.Rmd | 26 vignettes/yaml-validation.Rmd | 13 120 files changed, 2811 insertions(+), 2487 deletions(-)
More information about WCRBayesDesign at CRAN
Permanent link
Title: Maxwell Control Charts
Description: Computes Control limits, coefficients of control limits, various performance metrics and depicts control charts for monitoring Maxwell-distributed quality characteristics.
Author: Zahid Khan [aut],
Zsolt T. Kosztyan [aut, cre]
Maintainer: Zsolt T. Kosztyan <kosztyan.zsolt@gtk.uni-pannon.hu>
Diff between mxcc versions 0.0.4 dated 2025-08-19 and 0.0.5 dated 2026-04-10
DESCRIPTION | 8 ++++---- MD5 | 18 ++++++++++-------- NAMESPACE | 8 +++++--- R/mxewma.R |only R/plot.R | 8 ++------ R/print.R | 30 ++++++++++++++++-------------- R/summary.R | 6 +----- man/mxewma.Rd |only man/plot.Rd | 28 ++++++++++++++++------------ man/print.Rd | 14 ++++++-------- man/summary.Rd | 26 +++++++++++++++----------- 11 files changed, 75 insertions(+), 71 deletions(-)
More information about observationalBlocks at CRAN
Permanent link
Title: Multi-Omic Differentially Expressed Gene-Gene Pairs
Description: Performs multi-omic differential network
analysis by revealing differential interactions between molecular entities
(genes, proteins, transcription factors, or other biomolecules) across the
omic datasets provided.
For each omic dataset, a differential network is constructed where
links represent statistically significant differential interactions between
entities. These networks are then integrated into a comprehensive visualization
using distinct colors to distinguish interactions from different omic layers.
This unified display allows interactive exploration of cross-omic
patterns, such as differential interactions present at both transcript and
protein levels. For each link, users can access differential statistical
significance metrics (p values or adjusted p values, calculated via robust or
traditional linear regression with interaction term) and differential regression
plots.
The methods implemented in this package are described in Sciacca et al. (2023)
<doi:10.1093/bioinform [...truncated...]
Author: Elisabetta Sciacca [aut, cre, cph] ,
Myles Lewis [ctb]
Maintainer: Elisabetta Sciacca <e.sciacca@qmul.ac.uk>
Diff between multiDEGGs versions 1.2.0 dated 2026-03-24 and 1.2.1 dated 2026-04-10
DESCRIPTION | 6 MD5 | 25 ++-- NEWS.md | 5 R/feature_selection_for_ML.R | 29 ++-- README.md | 23 +++ inst/doc/Feature_Selection.R | 192 ++++++++++++++++++------------- inst/doc/Feature_Selection.Rmd | 50 +++++++- inst/doc/Feature_Selection.html | 76 +++++------- man/multiDEGGs_combined_filter.Rd | 15 +- man/multiDEGGs_filter.Rd | 14 +- tests/testthat/test-core_functions.R | 2 tests/testthat/test-plotting_functions.R | 6 vignettes/Feature_Selection.Rmd | 50 +++++++- vignettes/roc.png |only 14 files changed, 308 insertions(+), 185 deletions(-)
Title: R Markdown format for 'Moodle' XML cloze quizzes
Description: Enables the creation of 'Moodle' quiz questions using literate
programming with R Markdown. This makes it easy to quickly create a quiz that
can be randomly replicated with new datasets, questions, and options for
answers.
Author: Mitchell O'Hara-Wild [aut, cre] ,
Emi Tanaka [aut]
Maintainer: Mitchell O'Hara-Wild <mail@mitchelloharawild.com>
Diff between moodlequiz versions 0.2.0 dated 2025-12-06 and 0.2.1 dated 2026-04-10
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- NEWS.md | 6 +++++- README.md | 18 +++++++++++++++++- 4 files changed, 29 insertions(+), 9 deletions(-)
Title: Laboratorio di Ricerca Sociale con R
Description: Libreria di dati, scripts e funzioni che accompagna il libro "Ricerca sociale con R. Concetti e funzioni base per la ricerca sociale".
Author: Agnese Vardanega [aut, cre]
Maintainer: Agnese Vardanega <avardanega@unite.it>
Diff between LabRS versions 0.2.0 dated 2026-02-07 and 0.2.1 dated 2026-04-10
DESCRIPTION | 7 ++++--- MD5 | 4 ++-- README.md | 6 ++++++ 3 files changed, 12 insertions(+), 5 deletions(-)
Title: Package of the German Book "Statistik mit R und RStudio" by
Joerg grosse Schlarmann
Description: All datasets and functions used in the german book "Statistik mit R und RStudio" by grosse Schlarmann (2010-2024) <https://www.produnis.de/R/>.
Author: Joerg grosse Schlarmann [aut, cre]
Maintainer: Joerg grosse Schlarmann <schlarmann@produnis.de>
Diff between jgsbook versions 1.0.7 dated 2024-06-24 and 1.0.8 dated 2026-04-10
DESCRIPTION | 17 +++++++++-------- MD5 | 8 ++++---- NEWS.md | 4 ++++ R/functions.R | 42 ++++++++++++++++++++++++------------------ man/compare.lm.Rd | 2 +- 5 files changed, 42 insertions(+), 31 deletions(-)
Title: Build and Compare Statistical Models
Description: Build and compare nested statistical models with sets of equal and different independent variables. An analysis using this package is Marquardt et al. (2021) <https://github.com/p-mq/Percentile_based_averaging>.
Author: Dr J. Peter Amin Marquardt [aut, cre]
Maintainer: Dr J. Peter Amin Marquardt <peter@kmarquardt.de>
This is a re-admission after prior archival of version 0.1.2 dated 2021-08-02
Diff between BlanketStatsments versions 0.1.2 dated 2021-08-02 and 0.1.3 dated 2026-04-10
DESCRIPTION | 20 +++++----- MD5 | 14 +++---- NAMESPACE | 1 R/Blanket_statsments.R | 23 ++++++------ man/dot-build_model_formula.Rd | 58 +++++++++++++++---------------- man/redundancy_analysis.Rd | 2 - tests/testthat.R | 2 - tests/testthat/test-Blanket_statsments.R | 26 ++++++------- 8 files changed, 74 insertions(+), 72 deletions(-)
More information about BlanketStatsments at CRAN
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Title: Causal Analysis of Observational Time-to-Event Data
Description: Implements target trial emulation methods to apply randomized
clinical trial design and analysis in an observational setting. Using
marginal structural models, it can estimate intention-to-treat and
per-protocol effects in emulated trials using electronic health
records. A description and application of the method can be found in
Danaei et al (2013) <doi:10.1177/0962280211403603>.
Author: Isaac Gravestock [aut, cre] ,
Li Su [aut],
Roonak Rezvani [aut] ,
Julia Moesch [aut],
Medical Research Council [fnd],
F. Hoffmann-La Roche AG [cph, fnd]
Maintainer: Isaac Gravestock <isaac.gravestock@roche.com>
Diff between TrialEmulation versions 0.0.4.9 dated 2026-01-14 and 0.0.4.11 dated 2026-04-10
DESCRIPTION | 6 - MD5 | 16 +-- NEWS.md | 2 R/initiators.R | 2 inst/doc/Getting-Started.html | 188 +++++++++++++++++++++--------------------- inst/doc/new-interface.html | 10 +- man/data_preparation.Rd | 2 man/initiators.Rd | 2 man/trial_msm.Rd | 2 9 files changed, 115 insertions(+), 115 deletions(-)
More information about TrialEmulation at CRAN
Permanent link
Title: Get Executing Script's Path
Description: Determine the path of the executing script. Compatible
with several popular GUIs: 'Rgui', 'RStudio', 'Positron',
'VSCode', 'Jupyter', 'Emacs', and 'Rscript' (shell). Compatible
with several functions and packages: 'source()',
'sys.source()', 'debugSource()' in 'RStudio',
'compiler::loadcmp()', 'utils::Sweave()', 'box::use()',
'knitr::knit()', 'plumber::plumb()', 'shiny::runApp()',
'package:targets', and 'testthat::source_file()'.
Author: Iris Simmons [aut, cre]
Maintainer: Iris Simmons <ikwsimmo@gmail.com>
Diff between this.path versions 2.7.1 dated 2025-11-07 and 2.8.0 dated 2026-04-10
this.path-2.7.1/this.path/src/promises.h |only this.path-2.8.0/this.path/DESCRIPTION | 8 this.path-2.8.0/this.path/LICENSE | 2 this.path-2.8.0/this.path/MD5 | 271 +-- this.path-2.8.0/this.path/NAMESPACE | 6 this.path-2.8.0/this.path/NEWS | 57 this.path-2.8.0/this.path/R/0.R | 6 this.path-2.8.0/this.path/R/backports.R | 4 this.path-2.8.0/this.path/R/cat.R | 6 this.path-2.8.0/this.path/R/checkpath.R | 4 this.path-2.8.0/this.path/R/defunct.R | 6 this.path-2.8.0/this.path/R/enhances.R | 6 this.path-2.8.0/this.path/R/error.R | 6 this.path-2.8.0/this.path/R/files.R | 6 this.path-2.8.0/this.path/R/ismain.R | 6 this.path-2.8.0/this.path/R/lineno.R | 6 this.path-2.8.0/this.path/R/make_fix_funs.R | 10 this.path-2.8.0/this.path/R/ns-hooks.R | 6 this.path-2.8.0/this.path/R/print.R | 6 this.path-2.8.0/this.path/R/progargs.R | 6 this.path-2.8.0/this.path/R/promises.R | 10 this.path-2.8.0/this.path/R/relpath.R | 6 this.path-2.8.0/this.path/R/rprojroot.R | 6 this.path-2.8.0/this.path/R/setsyspath.R | 24 this.path-2.8.0/this.path/R/shfile.R | 6 this.path-2.8.0/this.path/R/startup.R | 12 this.path-2.8.0/this.path/R/sys.R | 6 this.path-2.8.0/this.path/R/sysputenv.R | 6 this.path-2.8.0/this.path/R/tests.R | 6 this.path-2.8.0/this.path/R/thispath.R | 29 this.path-2.8.0/this.path/R/utils.R | 6 this.path-2.8.0/this.path/R/zzz.R | 7 this.path-2.8.0/this.path/README.md | 19 this.path-2.8.0/this.path/build/stage23.rdb |binary this.path-2.8.0/this.path/build/this.path.pdf |binary this.path-2.8.0/this.path/configure | 6 this.path-2.8.0/this.path/configure.win | 6 this.path-2.8.0/this.path/inst/NEWS.in.Rd | 49 this.path-2.8.0/this.path/inst/doc/NEWS.0 | 3 this.path-2.8.0/this.path/inst/extdata/README | 4 this.path-2.8.0/this.path/inst/extdata/main.R | 97 - 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Title: Bayesian Mixtures with an Unknown Number of Components
Description: Fits Bayesian finite mixtures with an unknown number of components using the telescoping sampler and different component distributions. For more details see Frühwirth-Schnatter et al. (2021) <doi:10.1214/21-BA1294>, Malsiner-Walli et al. (in press) <doi:10.1007/s11634-025-00640-x> and Malsiner-Walli et al. (2026) <doi:10.48550/arXiv.2603.00277>.
Author: Gertraud Malsiner-Walli [aut, cre] ,
Bettina Gruen [aut] ,
Sylvia Fruehwirth-Schnatter [aut]
Maintainer: Gertraud Malsiner-Walli <Gertraud.Malsiner-Walli@wu.ac.at>
Diff between telescope versions 0.2-1 dated 2025-08-18 and 0.2-2 dated 2026-04-10
DESCRIPTION | 10 MD5 | 86 ++- R/SimData.R | 2 R/identifyLCAMixture.R | 7 R/identifyMixture.R | 7 R/plotBubble.R | 2 R/plotScatter.R | 2 R/priorOnK_spec.R | 2 R/prior_alpha_e0.R | 15 R/sampleK.R | 4 R/sampleLCA.R | 4 R/sampleLCAMixture.R | 4 R/sampleMultNormMixture.R | 4 R/samplePoisMixture.R | 4 R/sampleUniNormMixture.R | 12 R/sample_e0_alpha.R | 4 build/vignette.rds |binary inst/NEWS.Rd | 10 inst/doc/Bayesian_LCA.html | 388 ++++++++--------- inst/doc/Bayesian_LCA_mixtures.Rmd | 6 inst/doc/Bayesian_LCA_mixtures.html | 567 +++++++++++++------------- inst/doc/Bayesian_Poisson_mixtures.html | 364 ++++++++-------- inst/doc/Bayesian_mult_Gaussian_mixtures.html | 368 ++++++++-------- inst/doc/Bayesian_univ_Gaussian_mixtures.html | 366 ++++++++-------- inst/doc/CliPS_diabetes.R |only inst/doc/CliPS_diabetes.Rmd |only inst/doc/CliPS_diabetes.html |only man/SimData.Rd | 2 man/identifyLCAMixture.Rd | 4 man/identifyMixture.Rd | 4 man/plotBubble.Rd | 2 man/plotScatter.Rd | 2 man/priorOnAlpha_spec.Rd | 11 man/priorOnE0_spec.Rd | 2 man/priorOnK_spec.Rd | 2 man/sampleAlpha.Rd | 4 man/sampleK_alpha.Rd | 2 man/sampleK_e0.Rd | 2 man/sampleLCA.Rd | 4 man/sampleLCAMixture.Rd | 4 man/sampleMultNormMixture.Rd | 4 man/samplePoisMixture.Rd | 4 man/sampleUniNormMixture.Rd | 10 vignettes/Bayesian_LCA_mixtures.Rmd | 6 vignettes/CliPS_diabetes.Rmd |only vignettes/telescope.bib | 23 - 46 files changed, 1186 insertions(+), 1144 deletions(-)
Title: Transformed Additive Gaussian Processes
Description: Implement the transformed additive Gaussian (TAG) process and the transformed approximately additive Gaussian (TAAG) process proposed in Lin and Joseph (2020) <DOI:10.1080/00401706.2019.1665592>. These functions can be used to model deterministic computer experiments, obtain predictions at new inputs, and quantify the uncertainty of the predictions. This research is supported by a U.S. National Science Foundation grant DMS-1712642 and a U.S. Army Research Office grant W911NF-17-1-0007.
Author: Li-Hsiang Lin [aut, cre],
V. Roshan Joseph [aut]
Maintainer: Li-Hsiang Lin <lhlin@gsu.edu>
This is a re-admission after prior archival of version 0.5.1 dated 2021-06-07
Diff between TAG versions 0.5.1 dated 2021-06-07 and 0.7.1 dated 2026-04-10
DESCRIPTION | 14 +++++++++----- MD5 | 16 +++++++++------- R/TAG.R | 14 +++++++++++--- R/pred_TAAG.R | 13 +++++++++---- man/TAG.Rd | 2 +- src/Makevars | 1 - src/Makevars.win | 1 - src/RcppExports.cpp | 5 +++++ tests |only 9 files changed, 44 insertions(+), 22 deletions(-)
Title: Interface to the SCIP Optimization Suite
Description: Provides an R interface to SCIP (Solving Constraint Integer Programs), a framework for mixed-integer
programming (MIP), mixed-integer nonlinear programming (MINLP), and constraint integer programming
(2025, <doi:10.48550/arXiv.2511.18580>). Supports linear, quadratic, SOS, indicator, and knapsack
constraints with continuous, binary, and integer variables. Includes a one-shot solver interface
and a model-building API for incremental problem construction.
Author: Balasubramanian Narasimhan [aut, cre] ,
SCIP Optimization Suite Authors [cph]
Maintainer: Balasubramanian Narasimhan <naras@stanford.edu>
Diff between scip versions 1.10.0-2 dated 2026-04-03 and 1.10.0-3 dated 2026-04-10
DESCRIPTION | 8 MD5 | 138 +++++----- NEWS.md | 11 README.md | 14 - configure | 53 +++- configure.win | 44 +++ inst/CITATION | 2 inst/build_scip.sh | 14 - inst/scip/CMakeLists.txt | 6 inst/scip/Makefile | 27 +- inst/scip/cmake/Modules/FindASan.cmake | 2 inst/scip/cmake/Modules/FindMSan.cmake | 2 inst/scip/cmake/Modules/FindTSan.cmake | 2 inst/scip/cmake/Modules/FindUBSan.cmake | 9 inst/scip/cmake/Modules/sanitize-helpers.cmake | 50 ++- inst/scip/src/dejavu/dejavu.h | 14 - inst/scip/src/dejavu/ds.h | 5 inst/scip/src/dejavu/groups.h | 222 +++++++++++++++-- inst/scip/src/dejavu/ir.h | 14 + inst/scip/src/dejavu/preprocess.h | 52 ++-- inst/scip/src/dejavu/refinement.h | 18 + inst/scip/src/dejavu/utility.h | 2 inst/scip/src/scip/cons_nonlinear.c | 13 - inst/scip/src/scip/cons_superindicator.h | 28 +- inst/scip/src/scip/githash.c | 2 inst/scip/src/scip/heur_dks.c | 43 ++- inst/scip/src/scip/nlhdlr.c | 3 inst/scip/src/scip/nlpi_conopt.c | 5 inst/scip/src/scip/paramset.c | 15 - inst/scip/src/scip/presol_inttobinary.c | 4 inst/scip/src/scip/pub_iisfinder.h | 15 + inst/scip/src/scip/scip_iisfinder.h | 21 + inst/scip/src/scip/scip_solve.c | 63 +--- inst/scip/src/scip/scip_solvingstats.c | 28 ++ inst/scip/src/scip/scip_var.h | 4 inst/scip/src/scip/stat.c | 1 inst/scip/src/scip/struct_set.h | 3 inst/scip/src/scip/tree.c | 53 +--- inst/scip/src/scip/type_cons.h | 2 inst/scip/src/scip/var.c | 2 inst/scip/src/tinycthread/tinycthread.c | 30 +- inst/scip/src/tinycthread/tinycthread.h | 60 +--- inst/scip/src/tpi/tpi_openmp.c | 7 inst/scip/src/tpi/tpi_tnycthrd.c | 20 - inst/scip/src/tpi/tpi_tnycthrd.h | 8 inst/soplex/CMakeLists.txt | 2 inst/soplex/Makefile | 2 inst/soplex/cmake/Modules/FindASan.cmake | 2 inst/soplex/cmake/Modules/FindMSan.cmake | 2 inst/soplex/cmake/Modules/FindTSan.cmake | 2 inst/soplex/cmake/Modules/FindUBSan.cmake | 9 inst/soplex/cmake/Modules/sanitize-helpers.cmake | 50 ++- inst/soplex/src/soplex.hpp | 7 inst/soplex/src/soplex/basevectors.h | 86 ++---- inst/soplex/src/soplex/clufactor.hpp | 298 +++++++++++++---------- inst/soplex/src/soplex/clufactor_rational.hpp | 42 --- inst/soplex/src/soplex/fmt.hpp | 34 -- inst/soplex/src/soplex/git_hash.cpp | 2 inst/soplex/src/soplex/rational.h | 10 inst/soplex/src/soplex/slufactor.hpp | 18 - inst/soplex/src/soplex/solverational.hpp | 22 + inst/soplex/src/soplex/spxdefines.h | 20 + inst/soplex/src/soplex/spxsolve.hpp | 13 - inst/soplex/src/soplex/spxsolver.h | 22 - inst/soplex/src/soplex/spxsolver.hpp | 24 + inst/soplex/src/soplex/ssvectorbase.h | 58 ++-- inst/soplex/src/soplex/usertimer.cpp | 12 inst/soplex/src/soplex/wallclocktimer.cpp | 27 -- inst/soplex/src/soplexmain.cpp | 9 src/Makevars.in | 4 70 files changed, 1169 insertions(+), 747 deletions(-)
Title: Fast Generation of von Mises-Fisher Distributed Pseudo-Random
Vectors
Description: Generates pseudo-random vectors that follow an arbitrary von Mises-Fisher distribution on a sphere. This method is fast and efficient when generating a large number of pseudo-random vectors. Functions to generate random variates and compute density for the distribution of an inner product between von Mises-Fisher random vector and its mean direction are also provided. Details are in Kang and Oh (2024) <doi:10.1007/s11222-024-10419-3>.
Author: Seungwoo Kang [aut, cre] ,
Hee-Seok Oh [aut]
Maintainer: Seungwoo Kang <kangsw@skku.edu>
Diff between rvMF versions 0.1.1 dated 2026-02-15 and 0.1.2 dated 2026-04-10
DESCRIPTION | 10 +++++----- MD5 | 6 +++--- NEWS.md | 4 ++++ man/rvMF-package.Rd | 2 +- 4 files changed, 13 insertions(+), 9 deletions(-)
Title: Fast Iterative Filtering (FIF) with Portable FFT Backend
Description: Provides an R interface to a C implementation of Fast Iterative Filtering (FIF)
for decomposing a univariate signal into intrinsic mode functions (IMFs) and a residual.
The package uses Fast Fourier Transform library FFTW, if found. If not, it provides
instructions to install it for your OS. This is recommended, as R's internal fft(), while
avoiding external FFT dependencies, is two orders of magnitude slower. See vignette
'Installing FFTW for RFIF' for RFIF installation instructions.
Author: Chuck Coleman [aut, cre]
Maintainer: Chuck Coleman <cdcoleman113@gmail.com>
Diff between RFIF versions 1.0 dated 2026-03-31 and 1.0.1 dated 2026-04-10
DESCRIPTION | 9 MD5 | 20 NEWS.md | 6 build/vignette.rds |binary configure | 89 inst/doc/install-fftw3l.R |only inst/doc/install-fftw3l.Rmd |only inst/doc/install-fftw3l.html |only src/FFT.c | 525 src/FFT.h | 22 src/Fif.c | 5045 -------- src/Fif.h |24831 ++++++++++++++++++++++++++++++++++++++++++- vignettes/install-fftw3l.Rmd |only 13 files changed, 25685 insertions(+), 4862 deletions(-)
Title: Valid Inference on Multiple Quantile Regressions
Description: The approach is based on the closed testing procedure to control familywise error rate in a strong sense.
The local tests implemented are Wald-type and rank-score.
The method is described in De Santis, et al., (2026), <doi:10.48550/arXiv.2511.07999>.
Author: Angela Andreella [aut, cre],
Anna Vesely [aut],
Riccardo De Santis [aut]
Maintainer: Angela Andreella <angela.andreella@unive.it>
Diff between quasar versions 0.2.0 dated 2026-01-09 and 0.2.1 dated 2026-04-10
quasar-0.2.0/quasar/TODO |only quasar-0.2.1/quasar/DESCRIPTION | 10 +++++----- quasar-0.2.1/quasar/MD5 | 13 ++++++------- quasar-0.2.1/quasar/R/estimateCovariance.R | 2 +- quasar-0.2.1/quasar/R/rankTest.R | 4 ++-- quasar-0.2.1/quasar/R/utils.R | 2 +- quasar-0.2.1/quasar/README.md | 8 +++++--- quasar-0.2.1/quasar/man/rankTest.Rd | 2 +- 8 files changed, 21 insertions(+), 20 deletions(-)
Title: Visualizing Panel Data
Description: Visualizes panel data. It has four main functionalities: (1) it plots the treatment status and missing values in a panel dataset; (2) it visualizes the temporal dynamics of a main variable of interest; (3) it depicts the bivariate relationships between a treatment variable and an outcome variable either by unit or in aggregate; (4) it displays the network structure of multi-way fixed effects as a k-partite graph, identifying connected components, singletons, and duplicate observations. For details, see <doi:10.18637/jss.v107.i07>.
Author: Yiqing Xu [aut, cre] ,
Hongyu Mou [aut],
Licheng Liu [aut]
Maintainer: Yiqing Xu <yiqingxu@stanford.edu>
Diff between panelView versions 1.2.1 dated 2026-03-21 and 1.3.0 dated 2026-04-10
DESCRIPTION | 12 +-- MD5 | 10 +-- NAMESPACE | 5 + R/panelView.R | 141 +++++++++++++++++++++++++++++++++++--------- R/plot-network.R |only man/panelView.Rd | 18 ++++- tests/testthat/test-graph.R |only 7 files changed, 146 insertions(+), 40 deletions(-)
Title: Estimation, Diagnostics and Visualization of Conditional
Marginal Effects
Description: Performs estimation, diagnostics, and visualization of conditional marginal effects and group average treatment effects of a treatment on an outcome across different values of a moderator. Optionally integrates with the 'mlr3extralearners' package for additional machine learning backends compatible with the double machine learning estimators. 'mlr3extralearners' is not on CRAN but can be obtained from <https://github.com/mlr-org/mlr3extralearners>.
Author: Yiqing Xu [aut, cre],
Jens Hainmueller [aut],
Jonathan Mummolo [aut],
Tianzhu Qin [aut],
Jiehan Liu [aut],
Ziyi Liu [aut]
Maintainer: Yiqing Xu <yiqingxu@stanford.edu>
Diff between interflex versions 1.2.8 dated 2025-12-17 and 1.4.0 dated 2026-04-10
interflex-1.2.8/interflex/R/RcppExports.R |only interflex-1.2.8/interflex/R/ttest.R |only interflex-1.2.8/interflex/man/rcpparma_hello_world.Rd |only interflex-1.2.8/interflex/src |only interflex-1.4.0/interflex/DESCRIPTION | 52 interflex-1.4.0/interflex/MD5 | 97 interflex-1.4.0/interflex/NAMESPACE | 20 interflex-1.4.0/interflex/NEWS.md |only interflex-1.4.0/interflex/R/DML.R |only interflex-1.4.0/interflex/R/binning.R | 532 - interflex-1.4.0/interflex/R/estimate_cme_irm.R |only interflex-1.4.0/interflex/R/estimate_cme_plr.R |only interflex-1.4.0/interflex/R/estimate_gte_irm.R |only interflex-1.4.0/interflex/R/estimate_gte_plr.R |only interflex-1.4.0/interflex/R/gam.R | 46 interflex-1.4.0/interflex/R/gate_utils.R |only interflex-1.4.0/interflex/R/grf.R |only interflex-1.4.0/interflex/R/inter_test.R | 434 - interflex-1.4.0/interflex/R/interflex.R | 2679 +++++---- interflex-1.4.0/interflex/R/kernel.R | 4902 ++++++++++-------- interflex-1.4.0/interflex/R/lasso.R |only interflex-1.4.0/interflex/R/lasso_discrete.R |only interflex-1.4.0/interflex/R/linear.R | 4509 ++++++++-------- interflex-1.4.0/interflex/R/plot.R | 2965 ++++++---- interflex-1.4.0/interflex/R/plot_pool.R | 2525 +++++---- interflex-1.4.0/interflex/R/predict.R | 1574 ++--- interflex-1.4.0/interflex/R/print.R |only interflex-1.4.0/interflex/R/raw.R | 348 - interflex-1.4.0/interflex/R/uniform.R |only interflex-1.4.0/interflex/R/utils.R |only interflex-1.4.0/interflex/R/zzz.r | 20 interflex-1.4.0/interflex/data/interflex.RData |binary interflex-1.4.0/interflex/man/app-data.Rd |only interflex-1.4.0/interflex/man/inter_test.Rd | 2 interflex-1.4.0/interflex/man/interflex-internal.Rd | 4 interflex-1.4.0/interflex/man/interflex-package.Rd | 3 interflex-1.4.0/interflex/man/interflex.Rd | 220 interflex-1.4.0/interflex/man/plot.interflex.Rd | 28 interflex-1.4.0/interflex/man/predict.interflex.Rd | 2 interflex-1.4.0/interflex/man/s1.Rd | 1 interflex-1.4.0/interflex/man/s2.Rd | 1 interflex-1.4.0/interflex/man/s3.Rd | 1 interflex-1.4.0/interflex/man/s4.Rd | 1 interflex-1.4.0/interflex/man/s5.Rd | 1 interflex-1.4.0/interflex/man/s6.Rd | 1 interflex-1.4.0/interflex/man/s7.Rd | 1 interflex-1.4.0/interflex/man/s8.Rd | 1 interflex-1.4.0/interflex/man/s9.Rd | 1 interflex-1.4.0/interflex/tests |only 49 files changed, 11641 insertions(+), 9330 deletions(-)
Title: Geographical Ecology and Conservation Knowledge Online
Description: Includes a collection of geographical analysis functions aimed primarily at ecology and conservation science studies, allowing processing of both point and raster data. Now integrates SPECTRE (<https://biodiversityresearch.org/spectre/>), a dataset of global geospatial threat data, developed by the authors.
Author: Vasco V. Branco [cre, aut] ,
Pedro Cardoso [aut] ,
Luis Correia [ctb]
Maintainer: Vasco V. Branco <vasco.branco@helsinki.fi>
Diff between gecko versions 1.0.2 dated 2025-09-02 and 1.0.3 dated 2026-04-10
DESCRIPTION | 8 +++--- MD5 | 28 +++++++++++----------- R/access_fn.R | 37 +++++++++++++++++++++-------- R/aux_fn.R | 11 +++++++- R/outlier_fn.R | 36 ++++++++++++++++------------- R/spatial_fn.R | 37 ++++++++++++++++------------- R/spectrify.R | 4 +-- inst/extdata/spectre.metadata.csv | 47 +++++++++++++++++--------------------- man/create.lat.Rd | 4 +-- man/create.long.Rd | 4 +-- man/outliers.detect.Rd | 8 ++++-- man/outliers.detect.mass.Rd | 5 +++- man/reduce.Rd | 4 +++ man/spectre.area.Rd | 7 ++++- man/spectre.citations.Rd | 3 -- 15 files changed, 141 insertions(+), 102 deletions(-)
Title: Generate Color Mapping Functions
Description: A color mapping is generated according to the break values and corresponding colors.
Other colors are generated by interpolating in a certain color space. The functions were part
of the 'circlize' package <https://CRAN.R-project.org/package=circlize>.
Author: Zuguang Gu [aut, cre]
Maintainer: Zuguang Gu <guzuguang@suat-sz.edu.cn>
Diff between colorRamp2 versions 0.1.0 dated 2022-12-21 and 0.1.1 dated 2026-04-10
DESCRIPTION | 14 +++++++------- MD5 | 8 ++++---- build/vignette.rds |binary inst/doc/colorRamp2.R | 2 +- inst/doc/colorRamp2.html | 42 ++++++++++++++++++++++-------------------- 5 files changed, 34 insertions(+), 32 deletions(-)
Title: Israel Baby Names 1949-2024
Description: Israeli baby names provided by Israel's Central Bureau of Statistics
(CBS/LAMAS). Contains names used for at least 5 children in a given year,
covering sectors "Jewish", "Muslim", "Christian-Arab", and "Druze" from
1949-2024. Legacy 1948 data and archived "Other" sector data are provided
as separate datasets. Primary data source: CBS Release 391/2025
<https://www.cbs.gov.il/he/mediarelease/DocLib/2025/391/11_25_391t1.xlsx>.
Author: Aviezer Lifshitz [aut, cre]
Maintainer: Aviezer Lifshitz <aviezer.lifshitz@weizmann.ac.il>
Diff between babynamesIL versions 0.2.1 dated 2026-03-05 and 0.2.3 dated 2026-04-10
DESCRIPTION | 6 ++--- MD5 | 16 +++++++-------- NEWS.md | 32 ++++++++++++++++++++++++++++++ R/data.R | 6 ++++- README.md | 2 - data/babynamesIL_totals.rda |binary man/babynamesIL_totals.Rd | 6 ++++- tests/testthat/_snaps/data.md | 44 +++++++++++++++++++++--------------------- tests/testthat/test-data.R | 24 +++++++++++++++------- 9 files changed, 92 insertions(+), 44 deletions(-)
Title: Time Series Analysis with State Space Model
Description: Functions for statistical analysis, modeling and simulation of time
series with state space model, based on the methodology in Kitagawa
(2020, ISBN: 978-0-367-18733-0).
Author: Yoshinori Kawasaki [aut, cre],
Junji Nakano [aut],
Masami Saga [aut],
The Institute of Statistical Mathematics [cph, fnd]
Maintainer: Yoshinori Kawasaki <kawasaki@ism.ac.jp>
Diff between TSSS versions 1.3.4-5 dated 2023-09-29 and 1.3.4-7 dated 2026-04-10
TSSS-1.3.4-5/TSSS/inst/AUTHORS |only TSSS-1.3.4-5/TSSS/inst/doc |only TSSS-1.3.4-5/TSSS/src/TSSS.h |only TSSS-1.3.4-7/TSSS/DESCRIPTION | 23 +++- TSSS-1.3.4-7/TSSS/MD5 | 94 +++++++++---------- TSSS-1.3.4-7/TSSS/NEWS.md | 9 + TSSS-1.3.4-7/TSSS/data/BLSALLFOOD.rda |binary TSSS-1.3.4-7/TSSS/data/HAKUSAN.rda |binary TSSS-1.3.4-7/TSSS/data/Haibara.rda |binary TSSS-1.3.4-7/TSSS/data/MYE1F.rda |binary TSSS-1.3.4-7/TSSS/data/NLmodel.rda |binary TSSS-1.3.4-7/TSSS/data/Nikkei225.rda |binary TSSS-1.3.4-7/TSSS/data/PfilterSample.rda |binary TSSS-1.3.4-7/TSSS/data/Rainfall.rda |binary TSSS-1.3.4-7/TSSS/data/Sunspot.rda |binary TSSS-1.3.4-7/TSSS/data/Temperature.rda |binary TSSS-1.3.4-7/TSSS/data/WHARD.rda |binary TSSS-1.3.4-7/TSSS/inst/COPYRIGHTS |only TSSS-1.3.4-7/TSSS/src/arfitf.f | 2 TSSS-1.3.4-7/TSSS/src/armaf.f | 2 TSSS-1.3.4-7/TSSS/src/armafit2f.f | 2 TSSS-1.3.4-7/TSSS/src/armaftf.f | 2 TSSS-1.3.4-7/TSSS/src/boxcoxf.f | 2 TSSS-1.3.4-7/TSSS/src/comsub.f | 1 TSSS-1.3.4-7/TSSS/src/crscorf.f | 2 TSSS-1.3.4-7/TSSS/src/denstyf.f | 5 - TSSS-1.3.4-7/TSSS/src/fftperf.f | 2 TSSS-1.3.4-7/TSSS/src/init.c | 22 ---- TSSS-1.3.4-7/TSSS/src/klinfof.f | 2 TSSS-1.3.4-7/TSSS/src/lsar1f.f | 2 TSSS-1.3.4-7/TSSS/src/lsar2f.f | 2 TSSS-1.3.4-7/TSSS/src/lsqrf.f | 2 TSSS-1.3.4-7/TSSS/src/marfitf.f | 2 TSSS-1.3.4-7/TSSS/src/marlsqf.f | 2 TSSS-1.3.4-7/TSSS/src/marspcf.f | 2 TSSS-1.3.4-7/TSSS/src/ngsimf.f | 2 TSSS-1.3.4-7/TSSS/src/ngsmthf.f | 2 TSSS-1.3.4-7/TSSS/src/particle_smoother_nonlinearf.f | 15 +-- TSSS-1.3.4-7/TSSS/src/particle_smootherf.f | 8 + TSSS-1.3.4-7/TSSS/src/periodf.f | 2 TSSS-1.3.4-7/TSSS/src/polregf.f | 2 TSSS-1.3.4-7/TSSS/src/regF77.h | 22 ---- TSSS-1.3.4-7/TSSS/src/seasonf.f | 2 TSSS-1.3.4-7/TSSS/src/simssmf.f | 2 TSSS-1.3.4-7/TSSS/src/smoothf.f | 2 TSSS-1.3.4-7/TSSS/src/trendf.f | 2 TSSS-1.3.4-7/TSSS/src/tvarf.f | 2 TSSS-1.3.4-7/TSSS/src/tvspcf.f | 2 TSSS-1.3.4-7/TSSS/src/tvvarf.f | 2 TSSS-1.3.4-7/TSSS/src/unicorf.f | 2 50 files changed, 86 insertions(+), 165 deletions(-)
Title: Time-Dependent ROC Curve and AUC for Censored Survival Data
Description: Estimation of time-dependent ROC curve and area under time dependent ROC curve (AUC) in the presence of censored data, with or without competing risks. Confidence intervals of AUCs and tests for comparing AUCs of two rival markers measured on the same subjects can be computed, using the iid-representation of the AUC estimator. Plot functions for time-dependent ROC curves and AUC curves are provided. Time-dependent Positive Predictive Values (PPV) and Negative Predictive Values (NPV) can also be computed. See Blanche et al. (2013) <doi:10.1002/sim.5958> and references therein for the details of the methods implemented in the package.
Author: Paul Blanche [aut, cre]
Maintainer: Paul Blanche <paulfblanche@gmail.com>
Diff between timeROC versions 0.4 dated 2019-12-18 and 0.4.1 dated 2026-04-10
DESCRIPTION | 16 ++++++++++------ MD5 | 10 +++++----- data/Melano.RData |binary data/Paquid.RData |binary inst/CITATION | 13 +++---------- man/compare.Rd | 2 +- 6 files changed, 19 insertions(+), 22 deletions(-)
Title: Selective Editing via Mixture Models
Description: Detection of outliers and influential errors using a latent variable model.
Author: Ugo Guarnera [aut],
Teresa Buglielli [aut],
Davide Di Cecco [aut, cre]
Maintainer: Davide Di Cecco <dicecco@istat.it>
Diff between SeleMix versions 1.0.3 dated 2025-01-23 and 1.0.4 dated 2026-04-10
SeleMix-1.0.3/SeleMix/inst |only SeleMix-1.0.4/SeleMix/DESCRIPTION | 19 + SeleMix-1.0.4/SeleMix/MD5 | 31 +-- SeleMix-1.0.4/SeleMix/NAMESPACE | 14 - SeleMix-1.0.4/SeleMix/NEWS | 3 SeleMix-1.0.4/SeleMix/R/check.vars.r | 308 +++++++++++++++++++++----------- SeleMix-1.0.4/SeleMix/R/ml.est.R | 11 - SeleMix-1.0.4/SeleMix/R/post.prob.R | 131 +++++++++++-- SeleMix-1.0.4/SeleMix/R/pred.y.r | 294 ++++++++++++++++++------------ SeleMix-1.0.4/SeleMix/R/sel.edit.r | 223 +++++++++++++++-------- SeleMix-1.0.4/SeleMix/R/sel.pairs.r | 216 +++++++++++++++++----- SeleMix-1.0.4/SeleMix/R/sel.plot.R | 227 ++++++++++++++++------- SeleMix-1.0.4/SeleMix/R/tensorizza.R | 69 +++++-- SeleMix-1.0.4/SeleMix/build/partial.rdb |binary SeleMix-1.0.4/SeleMix/man/ml.est.Rd | 7 SeleMix-1.0.4/SeleMix/man/pred.y.Rd | 2 SeleMix-1.0.4/SeleMix/man/sel.edit.Rd | 2 17 files changed, 1060 insertions(+), 497 deletions(-)
Title: SAM: Significance Analysis of Microarrays
Description: Significance Analysis of Microarrays for differential expression analysis, RNAseq data and related problems.
Author: Rob Tibshirani [aut, cre],
Michael J. Seo [aut],
G. Chu [aut],
Balasubramanian Narasimhan [aut],
Jun Li [aut]
Maintainer: Rob Tibshirani <tibs@stanford.edu>
Diff between samr versions 3.0 dated 2018-10-16 and 3.0.1 dated 2026-04-10
DESCRIPTION | 32 +++++++++++++++++++++++++------- MD5 | 10 +++++----- inst/doc/sam.pdf |binary man/SAM.Rd | 2 +- man/samr.Rd | 10 +++++----- man/samr.assess.samplesize.plot.Rd | 2 +- 6 files changed, 37 insertions(+), 19 deletions(-)
Title: Reproducible Reports in Psychology
Description: Helper functions for producing reports in Psychology (Reproducible Research). Provides required formatted strings (APA style) for use in 'Knitr'/'Latex' integration within *.Rnw files.
Author: Ian G Mackenzie [cre, aut],
Carolin Dudschig [aut]
Maintainer: Ian G Mackenzie <ian.mackenzie@uni-tuebingen.de>
This is a re-admission after prior archival of version 3.0.2 dated 2022-09-09
Diff between psychReport versions 3.0.2 dated 2022-09-09 and 4.0.1 dated 2026-04-10
DESCRIPTION | 14 - LICENSE | 4 MD5 | 83 +++---- NAMESPACE | 3 NEWS.md |only R/anova.R | 301 ++++++++++---------------- R/psychReport.R | 1 R/psychReportData.R | 25 +- R/sphericity.R |only R/utils.R | 18 - man/aovDispMeans.Rd | 12 - man/aovDispTable.Rd | 10 man/aovEffectSize.Rd | 16 - man/aovJackknifeAdjustment.Rd | 13 - man/aovRoundDigits.Rd | 11 man/aovSphericityAdjustment.Rd | 20 - man/aovTable.Rd | 20 - man/aovTidyTable.Rd | 9 man/effectsizeValueString.Rd | 13 - man/fValueString.Rd | 7 man/mathString.Rd | 3 man/meanStrAov.Rd | 16 - man/normData.Rd | 3 man/printAovMeans.Rd | 8 man/printTable.Rd | 9 man/requiredPackages.Rd | 2 man/sphericityValueString.Rd | 11 man/statStrAov.Rd | 11 tests/testthat/test-aovDispMeans.R | 8 tests/testthat/test-aovDispTable.R | 14 - tests/testthat/test-aovEffectSize.R | 11 tests/testthat/test-aovJackknifeAdjustment.R | 11 tests/testthat/test-aovRoundDigits.R | 16 - tests/testthat/test-aovSphericityAdjustment.R | 90 ++++++- tests/testthat/test-aovTable.R | 29 +- tests/testthat/test-effectsizeValueString.R | 23 - tests/testthat/test-fValueString.R | 11 tests/testthat/test-meanStrAov.R | 19 - tests/testthat/test-printAovMeans.R | 14 - tests/testthat/test-printTable.R | 6 tests/testthat/test-psychReportData.R |only tests/testthat/test-requiredPackages.R | 5 tests/testthat/test-sphericityValueString.R | 32 +- tests/testthat/test-statStrAov.R | 30 -- 44 files changed, 395 insertions(+), 567 deletions(-)
Title: Analysis of Diffusion and Contagion Processes on Networks
Description: Empirical statistical analysis, visualization and simulation of
diffusion and contagion processes on networks. The package implements algorithms
for calculating network diffusion statistics such as transmission rate, hazard
rates, exposure models, network threshold levels, infectiousness (contagion),
and susceptibility. The package is inspired by work published in Valente,
et al., (2015) <DOI:10.1016/j.socscimed.2015.10.001>; Valente (1995) <ISBN:
9781881303213>, Myers (2000) <DOI:10.1086/303110>, Iyengar and others (2011)
<DOI:10.1287/mksc.1100.0566>, Burt (1987) <DOI:10.1086/228667>; among others.
Author: George Vega Yon [aut, cre] ,
Thomas Valente [aut, cph] ,
Anibal Olivera Morales [aut, ctb] ,
Stephanie Dyal [ctb] ,
Timothy Hayes [ctb]
Maintainer: George Vega Yon <g.vegayon@gmail.com>
This is a re-admission after prior archival of version 1.24.0 dated 2025-12-09
Diff between netdiffuseR versions 1.24.0 dated 2025-12-09 and 1.25.0 dated 2026-04-10
netdiffuseR-1.24.0/netdiffuseR/cleanup |only netdiffuseR-1.24.0/netdiffuseR/configure |only netdiffuseR-1.24.0/netdiffuseR/configure.ac |only netdiffuseR-1.24.0/netdiffuseR/src/Makevars.in |only netdiffuseR-1.25.0/netdiffuseR/DESCRIPTION | 32 ++-- netdiffuseR-1.25.0/netdiffuseR/MD5 | 66 ++++---- netdiffuseR-1.25.0/netdiffuseR/NAMESPACE | 1 netdiffuseR-1.25.0/netdiffuseR/NEWS.md | 22 ++ netdiffuseR-1.25.0/netdiffuseR/R/collapse_timeframes.R |only netdiffuseR-1.25.0/netdiffuseR/R/data.r | 79 ++++++++-- netdiffuseR-1.25.0/netdiffuseR/R/plot_diffnet2.r | 2 netdiffuseR-1.25.0/netdiffuseR/README.md | 40 ++--- netdiffuseR-1.25.0/netdiffuseR/build/partial.rdb |binary netdiffuseR-1.25.0/netdiffuseR/build/vignette.rds |binary netdiffuseR-1.25.0/netdiffuseR/data/epigames.rda |only netdiffuseR-1.25.0/netdiffuseR/data/epigamesDiffNet.rda |only netdiffuseR-1.25.0/netdiffuseR/inst/doc/analyzing-medical-innovation-data.html | 26 +-- netdiffuseR-1.25.0/netdiffuseR/inst/doc/introduction-to-netdiffuser.html | 18 +- netdiffuseR-1.25.0/netdiffuseR/man/brfarmers.Rd | 2 netdiffuseR-1.25.0/netdiffuseR/man/brfarmersDiffNet.Rd | 2 netdiffuseR-1.25.0/netdiffuseR/man/collapse_timeframes.Rd |only netdiffuseR-1.25.0/netdiffuseR/man/diffusion-data.Rd | 32 ++-- netdiffuseR-1.25.0/netdiffuseR/man/epigames.Rd |only netdiffuseR-1.25.0/netdiffuseR/man/epigamesDiffNet.Rd |only netdiffuseR-1.25.0/netdiffuseR/man/fakeDynEdgelist.Rd | 2 netdiffuseR-1.25.0/netdiffuseR/man/fakeEdgelist.Rd | 2 netdiffuseR-1.25.0/netdiffuseR/man/fakesurvey.Rd | 2 netdiffuseR-1.25.0/netdiffuseR/man/fakesurveyDyn.Rd | 2 netdiffuseR-1.25.0/netdiffuseR/man/figures/README-plot_diffnet-1.png |binary netdiffuseR-1.25.0/netdiffuseR/man/figures/README-plot_diffnet2-1.png |binary netdiffuseR-1.25.0/netdiffuseR/man/figures/README-plot_diffnet2-withmap-1.png |binary netdiffuseR-1.25.0/netdiffuseR/man/kfamily.Rd | 2 netdiffuseR-1.25.0/netdiffuseR/man/kfamilyDiffNet.Rd | 2 netdiffuseR-1.25.0/netdiffuseR/man/medInnovations.Rd | 2 netdiffuseR-1.25.0/netdiffuseR/man/medInnovationsDiffNet.Rd | 2 netdiffuseR-1.25.0/netdiffuseR/man/round_to_seq.Rd | 2 netdiffuseR-1.25.0/netdiffuseR/src/Makevars |only netdiffuseR-1.25.0/netdiffuseR/src/Makevars.win | 11 - netdiffuseR-1.25.0/netdiffuseR/src/plot.cpp | 17 +- netdiffuseR-1.25.0/netdiffuseR/tests/testthat/test-collapse_timeframes.R |only 40 files changed, 232 insertions(+), 136 deletions(-)
Title: Nested Cross-Validation with 'glmnet' and 'caret'
Description: Implements nested k*l-fold cross-validation for lasso and elastic-net regularised linear models via the 'glmnet' package and other machine learning models via the 'caret' package <doi:10.1093/bioadv/vbad048>. Cross-validation of 'glmnet' alpha mixing parameter and embedded fast filter functions for feature selection are provided. Described as double cross-validation by Stone (1977) <doi:10.1111/j.2517-6161.1977.tb01603.x>. Also implemented is a method using outer CV to measure unbiased model performance metrics when fitting Bayesian linear and logistic regression shrinkage models using the horseshoe prior over parameters to encourage a sparse model as described by Piironen & Vehtari (2017) <doi:10.1214/17-EJS1337SI>.
Author: Myles Lewis [aut, cre] ,
Athina Spiliopoulou [aut] ,
Cankut Cubuk [ctb] ,
Katriona Goldmann [ctb] ,
Ryan C. Thompson [ctb]
Maintainer: Myles Lewis <myles.lewis@qmul.ac.uk>
This is a re-admission after prior archival of version 0.8.0 dated 2025-03-10
Diff between nestedcv versions 0.8.0 dated 2025-03-10 and 0.8.2 dated 2026-04-10
DESCRIPTION | 18 +++++----- MD5 | 38 ++++++++++----------- NEWS.md | 12 ++++++ R/cv.hsstan.R | 2 + R/filters.R | 7 ++- R/nest_filter_balance.R | 11 ++++-- R/outercv.R | 4 +- R/precision_recall.R | 4 ++ R/repeatcv.R | 8 +++- R/shap.R | 3 + R/stat_filter.R | 3 + build/vignette.rds |binary inst/doc/nestedcv.html | 78 ++++++++++++++++++++++---------------------- inst/doc/nestedcv_shap.html | 22 +++++++++--- man/model.hsstan.Rd | 2 + man/outercv.Rd | 4 +- man/plot.prc.Rd | 2 + man/prc.Rd | 2 + man/pred_nestcv_glmnet.Rd | 3 + man/stat_filter.Rd | 3 + 20 files changed, 141 insertions(+), 85 deletions(-)
Title: Microbial Community Ecology Data Analysis
Description: A series of statistical and plotting approaches in microbial community ecology based on the R6 class. The classes are designed for data preprocessing, taxa abundance plotting, alpha diversity analysis, beta diversity analysis, differential abundance test, null model analysis, network analysis, machine learning, environmental data analysis and functional analysis.
Author: Chi Liu [aut, cre],
Felipe R. P. Mansoldo [ctb],
Minjie Yao [ctb],
Xiangzhen Li [ctb]
Maintainer: Chi Liu <liuchi0426@126.com>
Diff between microeco versions 2.0.0 dated 2026-01-27 and 2.1.0 dated 2026-04-10
DESCRIPTION | 8 +- MD5 | 50 ++++++++------- NAMESPACE | 1 R/data.R | 42 ++++++++++++- R/microtable.R | 4 - R/trans_abund.R | 26 ++++---- R/trans_alpha.R | 6 - R/trans_beta.R | 2 R/trans_classifier.R | 6 + R/trans_diff.R | 130 +++++++++++++++++++++++++--------------- R/trans_env.R | 124 +++++++++++++++++++++++--------------- R/trans_func.R | 3 R/trans_metab.R |only R/trans_network.R | 157 +++++++++++++++++++++++++++++-------------------- R/trans_nullmodel.R | 10 +-- R/trans_venn.R | 20 +++--- R/utility.R | 18 +++-- data/dataset.RData |binary data/soil_metab.RData |only data/soil_microb.RData |only man/microtable.Rd | 2 man/phylo_tree_16S.Rd | 2 man/soil_metab.Rd |only man/soil_microb.Rd |only man/tidy_taxonomy.Rd | 12 ++- man/trans_diff.Rd | 33 ++++++---- man/trans_env.Rd | 25 ++++--- man/trans_metab.Rd |only man/trans_network.Rd | 32 ++++++++- 29 files changed, 454 insertions(+), 259 deletions(-)
Title: Legends for Maps
Description: Create legends for maps and other graphics. Thematic maps need to
be accompanied by legible legends to be fully comprehensible. This package
offers a wide range of legends useful for cartography, some of which may
also be useful for other types of graphics.
Author: Timothee Giraud [cre, aut]
Maintainer: Timothee Giraud <timothee.giraud@cnrs.fr>
Diff between maplegend versions 0.6.0 dated 2026-04-07 and 0.6.1 dated 2026-04-10
DESCRIPTION | 6 +- MD5 | 8 +-- NEWS.md | 7 +++ R/lg_prop.R | 4 - inst/tinytest/tests.R | 106 ++++++++++++++++++++++++-------------------------- 5 files changed, 68 insertions(+), 63 deletions(-)
Title: Automatic Processing of Terrestrial-Based Technologies Point
Cloud Data for Forestry Purposes
Description: Process automation of point cloud data derived from terrestrial-based technologies such as Terrestrial Laser Scanner (TLS) or Mobile Laser Scanner. 'FORTLS' enables (i) detection of trees and estimation of tree-level attributes (e.g. diameters and heights), (ii) estimation of stand-level variables (e.g. density, basal area, mean and dominant height), (iii) computation of metrics related to important forest attributes estimated in Forest Inventories at stand-level, and (iv) optimization of plot design for combining TLS data and field measured data. Documentation about 'FORTLS' is described in Molina-Valero et al. (2022, <doi:10.1016/j.envsoft.2022.105337>).
Author: Juan Alberto Molina-Valero [aut, cph, cre],
Adela Martinez-Calvo [aut, com],
Juan Gabriel Alvarez-Gonzalez [aut, ths],
Fernando Montes [aut],
Cesar Perez-Cruzado [aut, ths]
Maintainer: Juan Alberto Molina-Valero <jamolinavalero@gmail.com>
This is a re-admission after prior archival of version 1.6.2 dated 2026-01-19
Diff between FORTLS versions 1.6.2 dated 2026-01-19 and 2.0.0 dated 2026-04-10
FORTLS-1.6.2/FORTLS/R/stem.analysis.R |only FORTLS-2.0.0/FORTLS/DESCRIPTION | 8 FORTLS-2.0.0/FORTLS/MD5 | 36 - FORTLS-2.0.0/FORTLS/NAMESPACE | 4 FORTLS-2.0.0/FORTLS/R/auxiliary.functions.R | 26 FORTLS-2.0.0/FORTLS/R/normalize.R | 393 ++++++------- FORTLS-2.0.0/FORTLS/R/straightness.R |only FORTLS-2.0.0/FORTLS/R/tree.detection.multi.scan.R | 320 +++++----- FORTLS-2.0.0/FORTLS/R/tree.detection.several.plots.R | 2 FORTLS-2.0.0/FORTLS/R/tree.detection.single.scan.R | 301 +++++---- FORTLS-2.0.0/FORTLS/build/partial.rdb |binary FORTLS-2.0.0/FORTLS/build/vignette.rds |binary FORTLS-2.0.0/FORTLS/inst/doc/plot_design_optimization.html | 4 FORTLS-2.0.0/FORTLS/inst/doc/tree_level.html | 94 +-- FORTLS-2.0.0/FORTLS/inst/python/geometric_features.py | 150 ++-- FORTLS-2.0.0/FORTLS/man/install_fortls_python_deps.Rd | 32 - FORTLS-2.0.0/FORTLS/man/normalize.Rd | 11 FORTLS-2.0.0/FORTLS/man/tree.detection.multi.scan.Rd | 11 FORTLS-2.0.0/FORTLS/man/tree.detection.several.plots.Rd | 17 FORTLS-2.0.0/FORTLS/man/tree.detection.single.scan.Rd | 15 20 files changed, 755 insertions(+), 669 deletions(-)
Title: Centrality-Based Pathway Enrichment
Description: It aims to find significant pathways through
network topology information. It has several advantages compared
with current pathway enrichment tools. First, pathway node instead
of single gene is taken as the basic unit when analysing networks
to meet the fact that genes must be constructed into complexes to
hold normal functions. Second, multiple network centrality measures are
applied simultaneously to measure importance of nodes from different
aspects to make a full view on the biological system. CePa extends
standard pathway enrichment methods, which include both over-representation
analysis procedure and gene-set analysis procedure.
<doi:10.1093/bioinformatics/btt008>.
Author: Zuguang Gu [aut, cre]
Maintainer: Zuguang Gu <guzuguang@suat-sz.edu.cn>
Diff between CePa versions 0.8.1 dated 2024-10-08 and 0.8.2 dated 2026-04-10
DESCRIPTION | 14 +++++++------- MD5 | 10 +++++----- inst/doc/CePa.pdf |binary inst/doc/analysis-p53.pdf |binary inst/doc/parsing-PID-pathway-data.pdf |binary man/report.Rd | 5 +---- 6 files changed, 13 insertions(+), 16 deletions(-)
Title: Boosted Multivariate Trees for Longitudinal Data
Description: Implements Friedman's gradient descent boosting algorithm for modeling longitudinal response using multivariate tree base learners. Longitudinal response could be continuous, binary, nominal or ordinal. A time-covariate interaction effect is modeled using penalized B-splines (P-splines) with estimated adaptive smoothing parameter. Although the package is design for longitudinal data, it can handle cross-sectional data as well. Implementation details are provided in Pande et al. (2017), Mach Learn <DOI:10.1007/s10994-016-5597-1>.
Author: Hemant Ishwaran [aut],
Amol Pande [aut],
Udaya B. Kogalur [aut, cre]
Maintainer: Udaya B. Kogalur <ubk@kogalur.com>
This is a re-admission after prior archival of version 1.5.1 dated 2022-03-10
Diff between boostmtree versions 1.5.1 dated 2022-03-10 and 2.0.0 dated 2026-04-10
boostmtree-1.5.1/boostmtree/R/marginalPlot.R |only boostmtree-1.5.1/boostmtree/R/partialPlot.R |only boostmtree-1.5.1/boostmtree/R/vimpPlot.R |only boostmtree-1.5.1/boostmtree/inst/NEWS |only boostmtree-1.5.1/boostmtree/man/marginalPlot.Rd |only boostmtree-1.5.1/boostmtree/man/partialPlot.Rd |only boostmtree-1.5.1/boostmtree/man/vimpPlot.Rd |only boostmtree-2.0.0/boostmtree/DESCRIPTION | 21 boostmtree-2.0.0/boostmtree/MD5 | 73 boostmtree-2.0.0/boostmtree/NAMESPACE | 29 boostmtree-2.0.0/boostmtree/NEWS.md |only boostmtree-2.0.0/boostmtree/R/boostmtree.R | 1218 ++--------- boostmtree-2.0.0/boostmtree/R/boostmtree.news.R | 68 boostmtree-2.0.0/boostmtree/R/boostmtree_control.R |only boostmtree-2.0.0/boostmtree/R/boostmtree_display.R |only boostmtree-2.0.0/boostmtree/R/boostmtree_fit_tree.R |only boostmtree-2.0.0/boostmtree/R/boostmtree_math.R |only boostmtree-2.0.0/boostmtree/R/boostmtree_object.R |only boostmtree-2.0.0/boostmtree/R/boostmtree_preprocess.R |only boostmtree-2.0.0/boostmtree/R/boostmtree_response.R |only boostmtree-2.0.0/boostmtree/R/generic.predict.boostmtree.R | 1226 +++++------- boostmtree-2.0.0/boostmtree/R/marginal_plot.boostmtree.R |only boostmtree-2.0.0/boostmtree/R/partial_plot.boostmtree.R |only boostmtree-2.0.0/boostmtree/R/plot.boostmtree.R | 470 +--- boostmtree-2.0.0/boostmtree/R/plot.vimp.boostmtree.R |only boostmtree-2.0.0/boostmtree/R/predict.boostmtree.R | 111 - boostmtree-2.0.0/boostmtree/R/print.boostmtree.R | 228 -- boostmtree-2.0.0/boostmtree/R/simLong.R | 267 +- boostmtree-2.0.0/boostmtree/R/utilities.R | 606 +---- boostmtree-2.0.0/boostmtree/R/vimp.boostmtree.R | 1021 +++++---- boostmtree-2.0.0/boostmtree/R/zzz.R | 66 boostmtree-2.0.0/boostmtree/data/AF.RData |binary boostmtree-2.0.0/boostmtree/data/spirometry.RData |binary boostmtree-2.0.0/boostmtree/inst/CITATION | 8 boostmtree-2.0.0/boostmtree/inst/copyright |only boostmtree-2.0.0/boostmtree/man/AF.Rd | 34 boostmtree-2.0.0/boostmtree/man/boostmtree.Rd | 912 +++++--- boostmtree-2.0.0/boostmtree/man/boostmtree.control.Rd |only boostmtree-2.0.0/boostmtree/man/boostmtree.news.Rd | 2 boostmtree-2.0.0/boostmtree/man/boostmtree_package.Rd | 56 boostmtree-2.0.0/boostmtree/man/marginal.plot.boostmtree.Rd |only boostmtree-2.0.0/boostmtree/man/partial.plot.boostmtree.Rd |only boostmtree-2.0.0/boostmtree/man/plot.boostmtree.Rd | 130 + boostmtree-2.0.0/boostmtree/man/plot.vimp.boostmtree.Rd |only boostmtree-2.0.0/boostmtree/man/predict.boostmtree.Rd | 489 ++-- boostmtree-2.0.0/boostmtree/man/print.boostmtree.Rd | 84 boostmtree-2.0.0/boostmtree/man/simLong.Rd | 131 - boostmtree-2.0.0/boostmtree/man/spirometry.Rd | 19 boostmtree-2.0.0/boostmtree/man/vimp.boostmtree.Rd | 180 + 49 files changed, 3214 insertions(+), 4235 deletions(-)
Title: Word Puzzle Game
Description: The word puzzle game requires you to find out the letters in a word within a limited number of guesses. In each round, if your guess hit any letters in the word, they reveal themselves. If all letters are revealed before your guesses run out, you win this game; otherwise you fail. You may run multiple games to guess different words.
Author: Xiurui Zhu [aut, cre],
@olivroy [ctb]
Maintainer: Xiurui Zhu <zxr6@163.com>
Diff between wordPuzzleR versions 0.1.1 dated 2024-02-24 and 0.1.2 dated 2026-04-10
DESCRIPTION | 12 +++---- MD5 | 10 +++--- NAMESPACE | 14 ++++----- NEWS.md | 9 +++++ README.md | 6 +-- man/wordPuzzleR-package.Rd | 68 ++++++++++++++++++++++----------------------- 6 files changed, 63 insertions(+), 56 deletions(-)
Title: Deploy Docs, Apps, and APIs to 'Posit Connect', 'shinyapps.io',
and 'RPubs'
Description: Programmatic deployment interface for 'RPubs',
'shinyapps.io', and 'Posit Connect'. Supported content types include R
Markdown documents, Shiny applications, Plumber APIs, plots, and
static web content.
Author: Aron Atkins [aut, cre],
Toph Allen [aut],
Hadley Wickham [aut],
Jonathan McPherson [aut],
JJ Allaire [aut],
Posit Software, PBC [cph, fnd]
Maintainer: Aron Atkins <aron@posit.co>
Diff between rsconnect versions 1.7.0 dated 2025-12-06 and 1.8.0 dated 2026-04-10
rsconnect-1.7.0/rsconnect/R/http-curl.R |only rsconnect-1.7.0/rsconnect/R/http-internal.R |only rsconnect-1.7.0/rsconnect/R/http-rcurl.R |only rsconnect-1.7.0/rsconnect/R/servers-deprec.R |only rsconnect-1.7.0/rsconnect/R/static-analysis.R |only rsconnect-1.7.0/rsconnect/man/addConnectServer.Rd |only rsconnect-1.7.0/rsconnect/man/authorizedUsers.Rd |only rsconnect-1.7.0/rsconnect/man/discoverServers.Rd |only rsconnect-1.7.0/rsconnect/tests/testthat/_snaps/servers-deprec.md |only rsconnect-1.7.0/rsconnect/tests/testthat/test-http-curl.R |only rsconnect-1.7.0/rsconnect/tests/testthat/test-http-internal.R |only rsconnect-1.7.0/rsconnect/tests/testthat/test-http-rcurl.R |only rsconnect-1.7.0/rsconnect/tests/testthat/test-servers-deprec.R |only rsconnect-1.8.0/rsconnect/DESCRIPTION | 18 rsconnect-1.8.0/rsconnect/MD5 | 114 ++--- rsconnect-1.8.0/rsconnect/NAMESPACE | 3 rsconnect-1.8.0/rsconnect/NEWS.md | 51 ++ rsconnect-1.8.0/rsconnect/R/accounts.R | 64 +++ rsconnect-1.8.0/rsconnect/R/appMetadata.R | 11 rsconnect-1.8.0/rsconnect/R/applications.R | 90 ---- rsconnect-1.8.0/rsconnect/R/auth.R | 8 rsconnect-1.8.0/rsconnect/R/bundle.R | 39 +- rsconnect-1.8.0/rsconnect/R/bundlePackage.R | 5 rsconnect-1.8.0/rsconnect/R/bundlePackageRenv.R | 70 ++- rsconnect-1.8.0/rsconnect/R/client-connect.R | 195 +++++----- rsconnect-1.8.0/rsconnect/R/client-connectCloud.R | 3 rsconnect-1.8.0/rsconnect/R/client-identityFederation.R |only rsconnect-1.8.0/rsconnect/R/client.R | 20 - rsconnect-1.8.0/rsconnect/R/configureApp.R | 8 rsconnect-1.8.0/rsconnect/R/deployApp.R | 45 -- rsconnect-1.8.0/rsconnect/R/http-httr2.R |only rsconnect-1.8.0/rsconnect/R/http.R | 172 +++++--- rsconnect-1.8.0/rsconnect/R/ide.R | 17 rsconnect-1.8.0/rsconnect/R/rpubs.R | 16 rsconnect-1.8.0/rsconnect/R/servers.R | 16 rsconnect-1.8.0/rsconnect/R/writeManifest.R | 2 rsconnect-1.8.0/rsconnect/man/addServer.Rd | 5 rsconnect-1.8.0/rsconnect/man/connectSPCSUser.Rd | 11 rsconnect-1.8.0/rsconnect/man/deployApp.Rd | 9 rsconnect-1.8.0/rsconnect/man/options.Rd | 15 rsconnect-1.8.0/rsconnect/man/showLogs.Rd | 8 rsconnect-1.8.0/rsconnect/man/writeManifest.Rd | 7 rsconnect-1.8.0/rsconnect/tests/integration |only rsconnect-1.8.0/rsconnect/tests/shinyapps-integration |only rsconnect-1.8.0/rsconnect/tests/testthat/_snaps/appMetadata.md | 9 rsconnect-1.8.0/rsconnect/tests/testthat/_snaps/bundlePackage.md | 16 rsconnect-1.8.0/rsconnect/tests/testthat/_snaps/bundlePackageRenv.md | 2 rsconnect-1.8.0/rsconnect/tests/testthat/_snaps/client-connect.md | 22 + rsconnect-1.8.0/rsconnect/tests/testthat/_snaps/deployApp.md | 11 rsconnect-1.8.0/rsconnect/tests/testthat/_snaps/http.md | 10 rsconnect-1.8.0/rsconnect/tests/testthat/helper.R | 38 - rsconnect-1.8.0/rsconnect/tests/testthat/test-accounts.R | 80 ++++ rsconnect-1.8.0/rsconnect/tests/testthat/test-appMetadata.R | 8 rsconnect-1.8.0/rsconnect/tests/testthat/test-bundle.R | 23 + rsconnect-1.8.0/rsconnect/tests/testthat/test-bundlePackage.R | 92 ++++ rsconnect-1.8.0/rsconnect/tests/testthat/test-bundlePackageRenv.R | 122 +++++- rsconnect-1.8.0/rsconnect/tests/testthat/test-cert.R | 32 - rsconnect-1.8.0/rsconnect/tests/testthat/test-client-connect.R | 88 ++++ rsconnect-1.8.0/rsconnect/tests/testthat/test-deployApp.R | 7 rsconnect-1.8.0/rsconnect/tests/testthat/test-http-httr2.R |only rsconnect-1.8.0/rsconnect/tests/testthat/test-http-libcurl.R | 4 rsconnect-1.8.0/rsconnect/tests/testthat/test-http.R | 5 rsconnect-1.8.0/rsconnect/tests/testthat/test-identityFederation.R |only rsconnect-1.8.0/rsconnect/tests/testthat/test-spcs.R | 81 ++++ rsconnect-1.8.0/rsconnect/tests/testthat/test-writeManifest.R | 61 +++ 65 files changed, 1174 insertions(+), 559 deletions(-)
Title: Write Reusable, Composable and Modular R Code
Description: A modern module system for R. Organise code into hierarchical,
composable, reusable modules, and use it effortlessly across projects via a
flexible, declarative dependency loading syntax.
Author: Konrad Rudolph [aut, cre] ,
Michael Schubert [ctb]
Maintainer: Konrad Rudolph <konrad.rudolph@gmail.com>
Diff between box versions 1.2.1 dated 2025-11-28 and 1.2.2 dated 2026-04-10
DESCRIPTION | 6 +-- LICENSE | 2 - MD5 | 47 +++++++++++++------------ NEWS.md | 7 +++ R/S3.r | 4 +- build/vignette.rds |binary inst/doc/box.html | 9 ++-- inst/doc/box.rmd | 2 - inst/doc/compiled-code.html | 7 +-- inst/doc/contributing.html | 7 +-- inst/doc/faq.html | 7 +-- inst/doc/migration.html | 7 +-- inst/doc/mod-envs.html | 9 ++-- inst/doc/related.html | 6 +-- inst/doc/related.rmd | 2 - inst/doc/testing.html | 7 +-- man/register_S3_method.Rd | 4 +- src/lookup.c | 36 +++++++++++++------ tests/testthat/helper-expect.r | 68 +++++++++++++++++++++++++++---------- tests/testthat/mod/active2.r |only tests/testthat/test-active.r | 27 ++++++++++++++ tests/testthat/test-expectations.r | 32 +++++++++++++++++ tests/testthat/test-reload.r | 2 - vignettes/box.rmd | 2 - vignettes/related.rmd | 2 - 25 files changed, 203 insertions(+), 99 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-08-25 0.4.2
2019-05-20 0.4.1
2019-05-12 0.4.0
2017-07-16 0.3.2
2016-12-05 0.3.1
2016-10-03 0.3.0
2015-11-10 0.2.3
2015-10-09 0.2.2
2015-07-18 0.2.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-03-13 0.2.0.1002
2024-02-17 0.2.0.1001
2021-06-07 0.1.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-04-21 1.2
2018-07-01 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-09-18 0.0.5
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-05-31 2016.05.31
2015-06-26 2015.06.25
2012-04-04 2012.04-0
2009-10-30 1.0.3
2009-01-30 1.0.2
2008-03-06 1.0.1
2008-03-04 1.0.0
2007-10-21 0.2-2
2005-03-15 0.2-1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-07-30 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-10-10 1.8.5
2020-03-03 1.8.4
2017-02-27 1.8.3
2014-12-19 1.7
2013-11-19 1.6
2012-03-29 1.5
2011-12-07 1.4
2011-08-25 1.3
2011-02-16 1.2
2011-02-11 1.1
2011-01-31 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-10-23 1.2.7.1
2022-05-27 1.2.7
2016-08-12 1.2.5
2016-08-11 1.2.4
2015-08-12 1.2.3
2015-03-16 1.2.1
2014-12-13 1.1.9
2014-11-11 1.1.8
2014-05-28 1.1.2
2014-03-27 1.1.1
2012-09-22 1.0-5
2011-08-30 0.5-1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-09-23 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-07-14 0.1.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-06-13 1.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-02-25 1.26.1
2024-10-28 1.24.10
2024-05-15 1.24.5
2019-09-11 1.1.1
2019-09-07 1.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-12-27 0.0.12.1
2022-08-09 0.0.12
2021-04-02 0.0.11
2021-02-20 0.0.10
2020-09-07 0.0.9
2020-06-25 0.0.8
2019-11-05 0.0.7
2019-09-29 0.0.6
2019-08-26 0.0.5
2019-07-27 0.0.4
2019-06-27 0.0.3
2019-05-23 0.0.2
2019-04-24 0.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-07-28 1.0.1
Title: Read and Write ODS Files
Description: Read ODS (OpenDocument Spreadsheet) into R as data frame. Also support writing data frame into ODS file.
Author: Gerrit-Jan Schutten [aut],
Chung-hong Chan [aut, cre] ,
Peter Brohan [aut],
Detlef Steuer [aut] ,
Thomas J. Leeper [aut] ,
John Foster [ctb],
Sergio Oller [ctb],
Jim Hester [ctb] ,
Stephen Watts [ctb],
Arthur Katossky [ctb],
Stas Malavin [ctb],
Dunca [...truncated...]
Maintainer: Chung-hong Chan <chainsawtiney@gmail.com>
Diff between readODS versions 2.3.2 dated 2025-01-13 and 2.3.4 dated 2026-04-10
DESCRIPTION | 25 MD5 | 64 NAMESPACE | 2 NEWS.md | 12 R/readODS-package.R | 3 R/read_ods.R | 168 + R/utils.R | 8 R/write_ods.R | 2 build/vignette.rds |binary inst/WORDLIST | 4 man/readODS-package.Rd | 1 man/readODS_progress.Rd |only man/read_ods.Rd | 12 src/cpp11.cpp | 32 src/get_sheet_names.cpp | 182 - src/is_ods.cpp | 208 - src/is_ods.h | 6 src/rapidxml/rapidxml.hpp | 4873 +++++++++++++++++------------------- src/rapidxml/rapidxml_ext.hpp | 32 src/rapidxml/rapidxml_iterators.hpp | 276 -- src/rapidxml/rapidxml_print.hpp | 802 +++-- src/rapidxml/rapidxml_utils.hpp | 192 - src/read_flat_ods_.cpp | 102 src/read_ods_.cpp | 75 src/read_ods_internals.cpp | 513 ++- src/read_ods_internals.h | 35 src/readxl/zip.cpp | 8 src/readxl/zip.h | 5 src/splice.cpp | 175 - src/splice.h | 10 src/write_sheet_file_.cpp | 346 +- src/write_sheet_file_.h | 20 tests/testthat/test_progress.R |only tests/testthat/test_write_ods.R | 29 34 files changed, 4339 insertions(+), 3883 deletions(-)
Title: Fast Unified Random Forests for Survival, Regression, and
Classification (RF-SRC)
Description: Fast OpenMP parallel computing of Breiman's random forests for univariate, multivariate, unsupervised, survival, competing risks, class imbalanced classification and quantile regression. New Mahalanobis splitting for correlated outcomes. Extreme random forests and randomized splitting. Suite of imputation methods for missing data. Fast random forests using subsampling. Confidence regions and standard errors for variable importance. New improved holdout importance. Case-specific importance. Minimal depth variable importance. Visualize trees on your Safari or Google Chrome browser. Anonymous random forests for data privacy.
Author: Hemant Ishwaran [aut],
Udaya B. Kogalur [aut, cre]
Maintainer: Udaya B. Kogalur <ubk@kogalur.com>
Diff between randomForestSRC versions 3.6.0 dated 2026-03-25 and 3.6.1 dated 2026-04-10
randomForestSRC-3.6.0/randomForestSRC/inst/NEWS |only randomForestSRC-3.6.1/randomForestSRC/DESCRIPTION | 8 randomForestSRC-3.6.1/randomForestSRC/MD5 | 19 randomForestSRC-3.6.1/randomForestSRC/NAMESPACE | 2 randomForestSRC-3.6.1/randomForestSRC/NEWS.md |only randomForestSRC-3.6.1/randomForestSRC/R/generic.predict.rfsrc.R | 2 randomForestSRC-3.6.1/randomForestSRC/R/impute.learn.rfsrc.R | 371 +++++++--- randomForestSRC-3.6.1/randomForestSRC/R/rfsrc.R | 4 randomForestSRC-3.6.1/randomForestSRC/R/utilities_impute.R | 1 randomForestSRC-3.6.1/randomForestSRC/R/utilities_impute.learn.R | 351 +++++++++ randomForestSRC-3.6.1/randomForestSRC/man/impute.learn.rfsrc.Rd | 187 ++++- randomForestSRC-3.6.1/randomForestSRC/src/Makevars |only 12 files changed, 793 insertions(+), 152 deletions(-)
More information about randomForestSRC at CRAN
Permanent link
Title: Portfolio Analysis, Including Numerical Methods for Optimization
of Portfolios
Description: Portfolio optimization and analysis routines and graphics.
Author: Brian G. Peterson [cre, aut, cph],
Peter Carl [aut, cph],
Ross Bennett [ctb, cph],
Kris Boudt [ctb, cph],
Xinran Zhao [ctb, cph],
R. Douglas Martin [ctb],
Guy Yollin [ctb],
Hezky Varon [ctb],
Xiaokang Feng [ctb],
Yifu Kang [ctb]
Maintainer: Brian G. Peterson <brian@braverock.com>
Diff between PortfolioAnalytics versions 2.1.1 dated 2026-02-04 and 2.1.2 dated 2026-04-10
DESCRIPTION | 8 MD5 | 61 NAMESPACE | 1 R/ac_ranking.R | 144 - R/applyFUN.R | 11 R/charts.efficient.frontier.R | 4 R/extract.efficient.frontier.R | 95 + R/extractrisk.R | 46 R/optimize.portfolio.R | 2604 +++++++++++++++++---------------- R/plotFrontiers.R | 27 build/vignette.rds |binary demo/demo_JPM2024MinDownsideRiskCVXR.R | 16 inst/doc/ROI_vignette.pdf |binary inst/doc/custom_moments_objectives.pdf |binary inst/doc/cvxrPortfolioAnalytics.pdf |binary inst/doc/portfolio_vignette.pdf |binary inst/doc/risk_budget_optimization.pdf |binary inst/doc/robustCovMatForPA.pdf |binary man/MycovRobMcd.Rd | 2 man/MycovRobTSGS.Rd | 2 man/ac.ranking.Rd | 16 man/centroid.buckets.Rd | 6 man/centroid.complete.mc.Rd | 6 man/centroid.sectors.Rd | 2 man/centroid.sign.Rd | 8 man/extract_risk.Rd | 11 man/meaneqs.efficient.frontier.Rd |only man/meanrisk.efficient.frontier.Rd | 4 man/optimize.portfolio.Rd | 48 man/optimize.portfolio.parallel.Rd | 8 man/optimize.portfolio.rebalancing.Rd | 76 man/plotFrontiers.Rd | 23 32 files changed, 1718 insertions(+), 1511 deletions(-)
More information about PortfolioAnalytics at CRAN
Permanent link
Title: Nonlinear Nonparametric Statistics
Description: NNS (Nonlinear Nonparametric Statistics) leverages partial moments – the fundamental elements of variance that asymptotically approximate the area under f(x) – to provide a robust foundation for nonlinear analysis while maintaining linear equivalences. Designed for real-world data that violates symmetry, linearity, or distributional assumptions, NNS delivers a comprehensive suite of advanced statistical techniques, including: Numerical integration, Numerical differentiation, Clustering, Correlation, Dependence, Causal analysis, ANOVA, Regression, Classification, Seasonality, Autoregressive modeling, Normalization, Stochastic superiority / dominance and Advanced Monte Carlo sampling. All routines based on: Viole, F. and Nawrocki, D. (2013), Nonlinear Nonparametric Statistics: Using Partial Moments (ISBN: 1490523995, Second edition: <https://ovvo-financial.github.io/NNS/book/>).
Author: Fred Viole [aut, cre],
Roberto Spadim [ctb]
Maintainer: Fred Viole <ovvo.open.source@gmail.com>
Diff between NNS versions 11.6.5 dated 2026-03-11 and 12.0 dated 2026-04-10
NNS-11.6.5/NNS/R/Dependence_matrix.R |only NNS-11.6.5/NNS/R/NNS_term_matrix.R |only NNS-11.6.5/NNS/man/NNS.term.matrix.Rd |only NNS-12.0/NNS/DESCRIPTION | 13 NNS-12.0/NNS/MD5 | 167 +- NNS-12.0/NNS/NAMESPACE | 2 NNS-12.0/NNS/R/ANOVA.R | 110 - NNS-12.0/NNS/R/ARMA.R | 2 NNS-12.0/NNS/R/ARMA_optim.R | 2 NNS-12.0/NNS/R/Binary_ANOVA.R | 11 NNS-12.0/NNS/R/Boost.R | 263 ++-- NNS-12.0/NNS/R/Causation.R | 2 NNS-12.0/NNS/R/Dependence.R | 309 +++-- NNS-12.0/NNS/R/LPM_UPM_VaR.R | 4 NNS-12.0/NNS/R/NNS-package.R | 2 NNS-12.0/NNS/R/NNS_VAR.R | 2 NNS-12.0/NNS/R/Normalization.R | 2 NNS-12.0/NNS/R/Nowcast.R | 2 NNS-12.0/NNS/R/Numerical_Differentiation.R | 441 ++++--- NNS-12.0/NNS/R/Partial_Moments.R | 30 NNS-12.0/NNS/R/Partition_Map.R | 2 NNS-12.0/NNS/R/RcppExports.R | 12 NNS-12.0/NNS/R/Regression.R | 2 NNS-12.0/NNS/R/Seasonality_Test.R | 2 NNS-12.0/NNS/R/Stack.R | 167 ++ NNS-12.0/NNS/R/Stochastic_superiority.R |only NNS-12.0/NNS/R/dy_d_wrt.R | 2 NNS-12.0/NNS/R/dy_dx.R | 2 NNS-12.0/NNS/README.md | 12 NNS-12.0/NNS/build/vignette.rds |binary NNS-12.0/NNS/inst/doc/NNSvignette_Classification.Rmd | 4 NNS-12.0/NNS/inst/doc/NNSvignette_Classification.html | 66 - NNS-12.0/NNS/inst/doc/NNSvignette_Clustering_and_Regression.Rmd | 21 NNS-12.0/NNS/inst/doc/NNSvignette_Clustering_and_Regression.html | 20 NNS-12.0/NNS/inst/doc/NNSvignette_Comparing_Distributions.R | 36 NNS-12.0/NNS/inst/doc/NNSvignette_Comparing_Distributions.Rmd | 82 + NNS-12.0/NNS/inst/doc/NNSvignette_Comparing_Distributions.html | 123 +- NNS-12.0/NNS/inst/doc/NNSvignette_Correlation_and_Dependence.Rmd | 10 NNS-12.0/NNS/inst/doc/NNSvignette_Correlation_and_Dependence.html | 22 NNS-12.0/NNS/inst/doc/NNSvignette_Forecasting.Rmd | 4 NNS-12.0/NNS/inst/doc/NNSvignette_Forecasting.html | 2 NNS-12.0/NNS/inst/doc/NNSvignette_Normalization_and_Rescaling.Rmd | 4 NNS-12.0/NNS/inst/doc/NNSvignette_Normalization_and_Rescaling.html | 2 NNS-12.0/NNS/inst/doc/NNSvignette_Overview.R | 44 NNS-12.0/NNS/inst/doc/NNSvignette_Overview.Rmd | 218 ++- NNS-12.0/NNS/inst/doc/NNSvignette_Overview.html | 590 ++++++---- NNS-12.0/NNS/inst/doc/NNSvignette_Partial_Moments.R | 2 NNS-12.0/NNS/inst/doc/NNSvignette_Partial_Moments.Rmd | 16 NNS-12.0/NNS/inst/doc/NNSvignette_Partial_Moments.html | 6 NNS-12.0/NNS/inst/doc/NNSvignette_Sampling.Rmd | 4 NNS-12.0/NNS/inst/doc/NNSvignette_Sampling.html | 2 NNS-12.0/NNS/man/LPM.Rd | 13 NNS-12.0/NNS/man/LPM.VaR.Rd | 2 NNS-12.0/NNS/man/NNS.ANOVA.Rd | 8 NNS-12.0/NNS/man/NNS.ARMA.Rd | 2 NNS-12.0/NNS/man/NNS.ARMA.optim.Rd | 2 NNS-12.0/NNS/man/NNS.CDF.Rd | 2 NNS-12.0/NNS/man/NNS.Rd | 3 NNS-12.0/NNS/man/NNS.SS.Rd |only NNS-12.0/NNS/man/NNS.VAR.Rd | 2 NNS-12.0/NNS/man/NNS.boost.Rd | 3 NNS-12.0/NNS/man/NNS.caus.Rd | 2 NNS-12.0/NNS/man/NNS.dep.Rd | 92 - NNS-12.0/NNS/man/NNS.diff.Rd | 29 NNS-12.0/NNS/man/NNS.moments.Rd | 2 NNS-12.0/NNS/man/NNS.norm.Rd | 2 NNS-12.0/NNS/man/NNS.nowcast.Rd | 2 NNS-12.0/NNS/man/NNS.part.Rd | 2 NNS-12.0/NNS/man/NNS.reg.Rd | 2 NNS-12.0/NNS/man/NNS.seas.Rd | 2 NNS-12.0/NNS/man/UPM.Rd | 13 NNS-12.0/NNS/man/UPM.VaR.Rd | 2 NNS-12.0/NNS/man/dy.d_.Rd | 2 NNS-12.0/NNS/man/dy.dx.Rd | 2 NNS-12.0/NNS/src/NNS_dep.cpp |only NNS-12.0/NNS/src/RcppExports.cpp | 42 NNS-12.0/NNS/src/internal_functions.cpp | 8 NNS-12.0/NNS/src/stoch_sup.cpp |only NNS-12.0/NNS/tests/testthat/Rplots.pdf |binary NNS-12.0/NNS/vignettes/NNSvignette_Classification.Rmd | 4 NNS-12.0/NNS/vignettes/NNSvignette_Clustering_and_Regression.Rmd | 21 NNS-12.0/NNS/vignettes/NNSvignette_Comparing_Distributions.Rmd | 82 + NNS-12.0/NNS/vignettes/NNSvignette_Correlation_and_Dependence.Rmd | 10 NNS-12.0/NNS/vignettes/NNSvignette_Forecasting.Rmd | 4 NNS-12.0/NNS/vignettes/NNSvignette_Normalization_and_Rescaling.Rmd | 4 NNS-12.0/NNS/vignettes/NNSvignette_Overview.Rmd | 218 ++- NNS-12.0/NNS/vignettes/NNSvignette_Partial_Moments.Rmd | 16 NNS-12.0/NNS/vignettes/NNSvignette_Sampling.Rmd | 4 88 files changed, 2222 insertions(+), 1225 deletions(-)
Title: Solve Systems of Nonlinear Equations
Description: Solve a system of nonlinear equations using a Broyden or a Newton method
with a choice of global strategies such as line search and trust region.
There are options for using a numerical or user supplied Jacobian,
for specifying a banded numerical Jacobian and for allowing
a singular or ill-conditioned Jacobian.
Author: Berend Hasselman [aut] ,
Rob Carnell [aut, cre]
Maintainer: Rob Carnell <bertcarnell@gmail.com>
Diff between nleqslv versions 3.3.6 dated 2026-03-05 and 3.3.7 dated 2026-04-10
nleqslv-3.3.6/nleqslv/build |only nleqslv-3.3.6/nleqslv/inst |only nleqslv-3.3.6/nleqslv/man/print.testnslv.Rd |only nleqslv-3.3.6/nleqslv/man/searchzeros.Rd |only nleqslv-3.3.6/nleqslv/man/zznleqslv-iterationreport.Rd |only nleqslv-3.3.6/nleqslv/tests/brdban.R |only nleqslv-3.3.6/nleqslv/tests/brdban.Rout.save |only nleqslv-3.3.6/nleqslv/tests/brdbanded.R |only nleqslv-3.3.6/nleqslv/tests/brdbanded.Rout.save |only nleqslv-3.3.6/nleqslv/tests/brdtri.R |only nleqslv-3.3.6/nleqslv/tests/brdtri.Rout.save |only nleqslv-3.3.6/nleqslv/tests/brdtrijac.R |only nleqslv-3.3.6/nleqslv/tests/brdtrijac.Rout.save |only nleqslv-3.3.6/nleqslv/tests/chquad.R |only nleqslv-3.3.6/nleqslv/tests/chquad.Rout.save |only nleqslv-3.3.6/nleqslv/tests/control-try.R |only nleqslv-3.3.6/nleqslv/tests/control-try.Rout.save |only nleqslv-3.3.6/nleqslv/tests/dslnex.R |only nleqslv-3.3.6/nleqslv/tests/dslnex.Rout.save |only nleqslv-3.3.6/nleqslv/tests/dslnexCN.R |only nleqslv-3.3.6/nleqslv/tests/dslnexCN.Rout.save |only nleqslv-3.3.6/nleqslv/tests/dslnexHook.R |only nleqslv-3.3.6/nleqslv/tests/dslnexHook.Rout.save |only nleqslv-3.3.6/nleqslv/tests/dslnexauto.R |only nleqslv-3.3.6/nleqslv/tests/dslnexauto.Rout.save |only nleqslv-3.3.6/nleqslv/tests/dslnexjacout.R |only nleqslv-3.3.6/nleqslv/tests/dslnexjacout.Rout.save |only nleqslv-3.3.6/nleqslv/tests/dslnexscaled.R |only nleqslv-3.3.6/nleqslv/tests/dslnexscaled.Rout.save |only nleqslv-3.3.6/nleqslv/tests/singular1.R |only nleqslv-3.3.6/nleqslv/tests/singular1.Rout.save |only nleqslv-3.3.6/nleqslv/tests/singular2.R |only nleqslv-3.3.6/nleqslv/tests/singular2.Rout.save |only nleqslv-3.3.6/nleqslv/tests/singular3.R |only nleqslv-3.3.6/nleqslv/tests/singular3.Rout.save |only nleqslv-3.3.6/nleqslv/tests/trig.R |only nleqslv-3.3.6/nleqslv/tests/trig.Rout.save |only nleqslv-3.3.6/nleqslv/tests/tscalargrad.R |only nleqslv-3.3.6/nleqslv/tests/tscalargrad.Rout.save |only nleqslv-3.3.6/nleqslv/tests/xcutlip1p2.R |only nleqslv-3.3.6/nleqslv/tests/xcutlip1p2.Rout.save |only nleqslv-3.3.6/nleqslv/tests/xnames.R |only nleqslv-3.3.6/nleqslv/tests/xnames.Rout.save |only nleqslv-3.3.6/nleqslv/tests/xsearchzeros.R |only nleqslv-3.3.6/nleqslv/tests/xsearchzeros.Rout.save |only nleqslv-3.3.6/nleqslv/tests/xtestnslv.R |only nleqslv-3.3.6/nleqslv/tests/xtestnslv.Rout.save |only nleqslv-3.3.7/nleqslv/DESCRIPTION | 13 nleqslv-3.3.7/nleqslv/MD5 | 119 +-- nleqslv-3.3.7/nleqslv/NAMESPACE | 9 nleqslv-3.3.7/nleqslv/NEWS | 6 nleqslv-3.3.7/nleqslv/R/nleqslv-iterationreport.R |only nleqslv-3.3.7/nleqslv/R/nleqslv-package.R |only nleqslv-3.3.7/nleqslv/R/nleqslv.R | 523 +++++++++++++-- nleqslv-3.3.7/nleqslv/R/searchzeros.R | 226 ++++-- nleqslv-3.3.7/nleqslv/R/testnslv.R | 301 ++++++--- nleqslv-3.3.7/nleqslv/man/figures |only nleqslv-3.3.7/nleqslv/man/nleqslv-iterationreport.Rd |only nleqslv-3.3.7/nleqslv/man/nleqslv-package.Rd | 78 +- nleqslv-3.3.7/nleqslv/man/nleqslv.Rd | 559 ++++++++--------- nleqslv-3.3.7/nleqslv/man/print.test.nleqslv.Rd |only nleqslv-3.3.7/nleqslv/man/searchZeros.Rd |only nleqslv-3.3.7/nleqslv/man/testnslv.Rd | 122 ++- nleqslv-3.3.7/nleqslv/src/init.c | 4 nleqslv-3.3.7/nleqslv/src/nleqslv.c | 60 - nleqslv-3.3.7/nleqslv/tests/testthat |only nleqslv-3.3.7/nleqslv/tests/testthat.R |only 67 files changed, 1299 insertions(+), 721 deletions(-)
Title: Mixed-Effects Diffusion Models with General Drift
Description: Provides tools for likelihood-based inference in one-dimensional stochastic differential equations with mixed effects using expectation–maximization (EM) algorithms. The package supports Wiener and Ornstein–Uhlenbeck diffusion processes with user-specified drift functions, allowing flexible parametric forms including polynomial, exponential, and trigonometric structures. Estimation is performed via Markov chain Monte Carlo EM.
Author: Pedro Abraham Montoya Calzada [aut, cre, cph] ,
Rogelio Salinas Gutierrez [aut, cph] ,
Silvia Rodriguez-Narciso [aut, cph] ,
Netzahualcoyotl Castaneda-Leyva [aut, cph]
Maintainer: Pedro Abraham Montoya Calzada <pedroabraham.montoya@gmail.com>
Diff between mixediffusion versions 1.0.0 dated 2026-03-20 and 1.0.1 dated 2026-04-10
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- R/EM_wiener.R | 46 ++++++++++++++++++++++++++-------------------- man/fit_ou.Rd | 2 +- man/fit_wiener.Rd | 6 ++---- 5 files changed, 36 insertions(+), 32 deletions(-)
Title: A General Framework for Latent Classify and Profile Analysis
Description: A unified latent class modeling framework that encompasses both latent class analysis (LCA) and latent profile analysis (LPA), offering a one-stop solution for latent class modeling. It implements state-of-the-art parameter estimation methods, including the expectation–maximization (EM) algorithm, neural network estimation (NNE; requires users to have 'Python' and its dependent libraries installed on their computer), and integration with 'Mplus' (requires users to have 'Mplus' installed on their computer). In addition, it provides commonly used model fit indices such as the Akaike information criterion (AIC) and Bayesian information criterion (BIC), as well as classification accuracy measures such as entropy. The package also includes fully functional likelihood ratio tests (LRT) and bootstrap likelihood ratio tests (BLRT) to facilitate model comparison, along with bootstrap-based and observed information matrix-based standard error estimation. Furthermore, it supports the standard thr [...truncated...]
Author: Haijiang Qin [aut, cre, cph] ,
Lei Guo [aut, cph]
Maintainer: Haijiang Qin <haijiang133@outlook.com>
Diff between LCPA versions 1.0.1 dated 2026-02-27 and 1.0.2 dated 2026-04-10
LCPA-1.0.1/LCPA/tests/main_LCA_attention_10.R |only LCPA-1.0.1/LCPA/tests/main_LPA_attention_10.R |only LCPA-1.0.2/LCPA/DESCRIPTION | 37 +- LCPA-1.0.2/LCPA/MD5 | 105 ++++--- LCPA-1.0.2/LCPA/NAMESPACE | 27 ++ LCPA-1.0.2/LCPA/NEWS.md | 11 LCPA-1.0.2/LCPA/R/Kmeans.LCA.R | 6 LCPA-1.0.2/LCPA/R/LCA.R | 22 - LCPA-1.0.2/LCPA/R/LCPA.R | 44 +-- LCPA-1.0.2/LCPA/R/LPA.R | 7 LCPA-1.0.2/LCPA/R/LRT.test.Bootstrap.R | 282 +++++++++++++++------ LCPA-1.0.2/LCPA/R/LTA.R | 25 + LCPA-1.0.2/LCPA/R/Mplus.LCA.R | 55 +++- LCPA-1.0.2/LCPA/R/Mplus.LPA.R | 195 ++++++++------ LCPA-1.0.2/LCPA/R/S3plot.R |only LCPA-1.0.2/LCPA/R/S3print.R | 97 ++++--- LCPA-1.0.2/LCPA/R/S3summary.R | 19 - LCPA-1.0.2/LCPA/R/S3update.R | 4 LCPA-1.0.2/LCPA/R/adjust.model.R |only LCPA-1.0.2/LCPA/R/adjust.response.R | 26 - LCPA-1.0.2/LCPA/R/check.response.R | 10 LCPA-1.0.2/LCPA/R/compare.model.R | 2 LCPA-1.0.2/LCPA/R/get.Log.Lik.LCA.R | 6 LCPA-1.0.2/LCPA/R/get.P.Z.Xn.LCA.R | 114 ++------ LCPA-1.0.2/LCPA/R/get.P.Z.Xn.LPA.R | 147 ++++------ LCPA-1.0.2/LCPA/R/get.SE.R | 4 LCPA-1.0.2/LCPA/R/install_python_dependencies.R | 165 ++++++------ LCPA-1.0.2/LCPA/R/normalize.R | 2 LCPA-1.0.2/LCPA/R/plotResponse.R | 28 +- LCPA-1.0.2/LCPA/R/sim.LCA.R | 6 LCPA-1.0.2/LCPA/R/sim.LPA.R | 6 LCPA-1.0.2/LCPA/R/sim.LTA.R | 12 LCPA-1.0.2/LCPA/R/tools.R | 18 - LCPA-1.0.2/LCPA/inst/python/Net_LCA.py | 223 +++++++++------- LCPA-1.0.2/LCPA/inst/python/Net_LPA.py | 272 ++++++++++++-------- LCPA-1.0.2/LCPA/man/Kmeans.LCA.Rd | 6 LCPA-1.0.2/LCPA/man/LCA.Rd | 16 - LCPA-1.0.2/LCPA/man/LCPA.Rd | 26 + LCPA-1.0.2/LCPA/man/LPA.Rd | 5 LCPA-1.0.2/LCPA/man/LRT.test.Bootstrap.Rd | 161 +++++++---- LCPA-1.0.2/LCPA/man/LTA.Rd | 6 LCPA-1.0.2/LCPA/man/adjust.model.Rd |only LCPA-1.0.2/LCPA/man/adjust.response.Rd | 26 - LCPA-1.0.2/LCPA/man/check.response.Rd | 10 LCPA-1.0.2/LCPA/man/get.Log.Lik.LCA.Rd | 6 LCPA-1.0.2/LCPA/man/get.P.Z.Xn.LCA.Rd | 70 +---- LCPA-1.0.2/LCPA/man/get.P.Z.Xn.LPA.Rd | 65 +--- LCPA-1.0.2/LCPA/man/get.SE.Rd | 4 LCPA-1.0.2/LCPA/man/install_python_dependencies.Rd | 8 LCPA-1.0.2/LCPA/man/normalize.Rd | 2 LCPA-1.0.2/LCPA/man/plot.Rd |only LCPA-1.0.2/LCPA/man/plotResponse.Rd | 28 +- LCPA-1.0.2/LCPA/man/sim.LCA.Rd | 6 LCPA-1.0.2/LCPA/man/sim.LTA.Rd | 12 LCPA-1.0.2/LCPA/man/summary.Rd | 4 LCPA-1.0.2/LCPA/tests/building.R | 2 LCPA-1.0.2/LCPA/tests/demo.R |only 57 files changed, 1393 insertions(+), 1047 deletions(-)
Title: Semi-Automatic Grading of R and Rmd Scripts
Description: A customisable set of tools for assessing and grading
R or R-markdown scripts from students. It allows for checking correctness
of code output, runtime statistics and static code analysis. The latter
feature is made possible by representing R expressions using a tree
structure.
Author: Vik Gopal [aut],
Agrawal Naman [aut, cre],
Yuting Huang [ctb],
Samuel Seah [aut],
Viknesh Jeya Kumar [aut],
Gabriel Ang [aut],
Ruofan Liu [ctb],
National University of Singapore [cph]
Maintainer: Agrawal Naman <naman.a@nus.edu.sg>
Diff between autoharp versions 0.2.0 dated 2026-02-19 and 0.3.1 dated 2026-04-10
autoharp-0.2.0/autoharp/inst/examples/1910-tut04 |only autoharp-0.2.0/autoharp/inst/examples/2010-tut02 |only autoharp-0.2.0/autoharp/inst/examples/2010-tut07 |only autoharp-0.2.0/autoharp/inst/examples/2010-tut08 |only autoharp-0.2.0/autoharp/inst/examples/2010-tut09 |only autoharp-0.2.0/autoharp/inst/examples/2210-ass01 |only autoharp-0.2.0/autoharp/inst/examples/2210-ass02 |only autoharp-0.2.0/autoharp/inst/examples/README.md |only autoharp-0.2.0/autoharp/inst/examples/learnr-1910-tut04 |only autoharp-0.2.0/autoharp/inst/examples/learnr-2210-ass02 |only autoharp-0.3.1/autoharp/DESCRIPTION | 29 - autoharp-0.3.1/autoharp/MD5 | 165 ++++------ autoharp-0.3.1/autoharp/NEWS | 13 autoharp-0.3.1/autoharp/NEWS.md |only autoharp-0.3.1/autoharp/R/autoharp.R | 2 autoharp-0.3.1/autoharp/R/nlp_related.R | 2 autoharp-0.3.1/autoharp/R/populate_soln_env.R | 4 autoharp-0.3.1/autoharp/README.md |only autoharp-0.3.1/autoharp/build |only autoharp-0.3.1/autoharp/inst/doc |only autoharp-0.3.1/autoharp/inst/examples/example-01 |only autoharp-0.3.1/autoharp/inst/shiny/grading_app |only autoharp-0.3.1/autoharp/inst/shiny/similarity_app/R/helpers.R | 102 ++++-- autoharp-0.3.1/autoharp/inst/shiny/similarity_app/app.R | 67 +++- autoharp-0.3.1/autoharp/man/autoharp.Rd | 5 autoharp-0.3.1/autoharp/man/figures |only autoharp-0.3.1/autoharp/vignettes |only 27 files changed, 241 insertions(+), 148 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-02-25 0.10.3
2021-09-06 0.10.2
Title: Functions for Stochastic Search Variable Selection (SSVS)
Description: Functions for performing stochastic search variable selection (SSVS)
for binary and continuous outcomes and visualizing the results.
SSVS is a Bayesian variable selection method used to estimate the probability
that individual predictors should be included in a regression model.
Using MCMC estimation, the method samples thousands of regression models
in order to characterize the model uncertainty regarding both the predictor
set and the regression parameters. For details see Bainter, McCauley, Wager,
and Losin (2020) Improving practices for selecting a subset of important
predictors in psychology: An application to predicting pain, Advances in
Methods and Practices in Psychological Science 3(1), 66-80
<DOI:10.1177/2515245919885617>.
Author: Sierra Bainter [cre, aut] ,
Thomas McCauley [aut],
Mahmoud Fahmy [aut],
Dean Attali [aut]
Maintainer: Sierra Bainter <sbainter@miami.edu>
Diff between SSVS versions 2.1.0 dated 2025-03-19 and 2.2.0 dated 2026-04-09
SSVS-2.1.0/SSVS/inst/testdata |only SSVS-2.2.0/SSVS/DESCRIPTION | 15 +-- SSVS-2.2.0/SSVS/MD5 | 29 +++--- SSVS-2.2.0/SSVS/NEWS.md | 6 + SSVS-2.2.0/SSVS/R/SSVS.R | 91 ++++++++++++++----- SSVS-2.2.0/SSVS/R/SSVS_MI.R | 15 ++- SSVS-2.2.0/SSVS/R/imputed_affairs.R |only SSVS-2.2.0/SSVS/R/utils.R | 69 ++++++++++++++ SSVS-2.2.0/SSVS/README.md | 45 ++++----- SSVS-2.2.0/SSVS/data/imputed_affairs.RData |only SSVS-2.2.0/SSVS/man/figures/README-binary-plot-1.png |binary SSVS-2.2.0/SSVS/man/figures/README-plot-1.png |binary SSVS-2.2.0/SSVS/man/imputed_affairs.Rd |only SSVS-2.2.0/SSVS/man/ssvs.Rd | 56 ++++++++--- SSVS-2.2.0/SSVS/man/ssvs_mi.Rd | 15 ++- SSVS-2.2.0/SSVS/tests/testthat/test-ssvs.R | 31 ++++++ SSVS-2.2.0/SSVS/tests/testthat/test-summary.R | 26 ++++- 17 files changed, 307 insertions(+), 91 deletions(-)
Title: Retrieval and Processing of the Spanish National Forest
Inventory
Description: Fetches, harmonizes, and analyses data from the Spanish National
Forest Inventory for reproducible, design-aware forest inventory workflows.
Computes tree- and stand-level metrics, applies sampling-based expansion
factors, estimates volume, and supports extensible processing for external
inventory designs with custom sampling schemes and volume equations.
Author: Wilson Lara [aut, cre] ,
Cristobal Ordonez [aut] ,
Aitor Vazquez-Veloso [aut] ,
Felipe Bravo [aut]
Maintainer: Wilson Lara <wilarhen@gmail.com>
Diff between basifoR versions 0.4.1 dated 2025-04-02 and 0.7.7 dated 2026-04-09
basifoR-0.4.1/basifoR/R/urlToTemp.R |only basifoR-0.4.1/basifoR/man/urlToTemp.Rd |only basifoR-0.7.7/basifoR/DESCRIPTION | 42 basifoR-0.7.7/basifoR/MD5 | 83 basifoR-0.7.7/basifoR/NAMESPACE | 46 basifoR-0.7.7/basifoR/NEWS | 88 basifoR-0.7.7/basifoR/R/dbhMetric.R | 132 - basifoR-0.7.7/basifoR/R/default_external_volume_methods.R |only basifoR-0.7.7/basifoR/R/default_snfi_volume_equations.R |only basifoR-0.7.7/basifoR/R/dendroMetrics.R | 927 ++++++- basifoR-0.7.7/basifoR/R/externalMetrics.R |only basifoR-0.7.7/basifoR/R/externalMetrics2Vol.R |only basifoR-0.7.7/basifoR/R/external_dendroMetrics.R |only basifoR-0.7.7/basifoR/R/external_volume_method_registry.R |only basifoR-0.7.7/basifoR/R/fetchNFI.R |only basifoR-0.7.7/basifoR/R/getNFI.R |only basifoR-0.7.7/basifoR/R/internal.R | 1329 ++++++++++- basifoR-0.7.7/basifoR/R/inventoryMetrics.R |only basifoR-0.7.7/basifoR/R/metrics2Vol.R | 851 +++++-- basifoR-0.7.7/basifoR/R/new_concentric_design.R |only basifoR-0.7.7/basifoR/R/new_external_schema.R |only basifoR-0.7.7/basifoR/R/new_inventory_design.R |only basifoR-0.7.7/basifoR/R/new_volume_method.R |only basifoR-0.7.7/basifoR/R/nfiMetrics.R | 478 +++ basifoR-0.7.7/basifoR/R/print.concentric_design.R |only basifoR-0.7.7/basifoR/R/print.inventory_design.R |only basifoR-0.7.7/basifoR/R/readNFI.R | 413 ++- basifoR-0.7.7/basifoR/R/snfi_design.R |only basifoR-0.7.7/basifoR/R/snfi_volume_equations.R |only basifoR-0.7.7/basifoR/R/snfi_volume_method_registry.R |only basifoR-0.7.7/basifoR/R/sysdata.rda |binary basifoR-0.7.7/basifoR/R/trees_per_ha.R |only basifoR-0.7.7/basifoR/R/update.external_dendroMetrics.R |only basifoR-0.7.7/basifoR/inst/Ifn4_Toledo.zip |only basifoR-0.7.7/basifoR/inst/ifn3p28.zip |only basifoR-0.7.7/basifoR/man/dbhMetric.Rd | 59 basifoR-0.7.7/basifoR/man/default_external_volume_methods.Rd |only basifoR-0.7.7/basifoR/man/default_snfi_volume_equations.Rd |only basifoR-0.7.7/basifoR/man/dendroMetrics.Rd | 172 - basifoR-0.7.7/basifoR/man/externalMetrics.Rd |only basifoR-0.7.7/basifoR/man/externalMetrics2Vol.Rd |only basifoR-0.7.7/basifoR/man/external_dendroMetrics.Rd |only basifoR-0.7.7/basifoR/man/external_volume_method_registry.Rd |only basifoR-0.7.7/basifoR/man/fetchNFI.Rd |only basifoR-0.7.7/basifoR/man/getNFI.Rd |only basifoR-0.7.7/basifoR/man/get_snfi_iavc.Rd |only basifoR-0.7.7/basifoR/man/get_snfi_vcc.Rd |only basifoR-0.7.7/basifoR/man/get_snfi_vle.Rd |only basifoR-0.7.7/basifoR/man/get_snfi_vsc.Rd |only basifoR-0.7.7/basifoR/man/inventoryMetrics.Rd |only basifoR-0.7.7/basifoR/man/metrics2Vol.Rd | 120 basifoR-0.7.7/basifoR/man/new_concentric_design.Rd |only basifoR-0.7.7/basifoR/man/new_external_schema.Rd |only basifoR-0.7.7/basifoR/man/new_inventory_design.Rd |only basifoR-0.7.7/basifoR/man/new_volume_method.Rd |only basifoR-0.7.7/basifoR/man/nfiMetrics.Rd | 134 - basifoR-0.7.7/basifoR/man/print.concentric_design.Rd |only basifoR-0.7.7/basifoR/man/print.external_schema.Rd |only basifoR-0.7.7/basifoR/man/print.inventory_design.Rd |only basifoR-0.7.7/basifoR/man/readNFI.Rd | 176 + basifoR-0.7.7/basifoR/man/snfi_design.Rd |only basifoR-0.7.7/basifoR/man/snfi_volume_method_registry.Rd |only basifoR-0.7.7/basifoR/man/trees_per_ha.Rd |only basifoR-0.7.7/basifoR/man/trees_per_ha.concentric_design.Rd |only basifoR-0.7.7/basifoR/man/trees_per_ha.inventory_design.Rd |only basifoR-0.7.7/basifoR/man/update.dendroMetrics.Rd |only basifoR-0.7.7/basifoR/man/update.external_dendroMetrics.Rd |only basifoR-0.7.7/basifoR/man/update.inventoryMetrics.Rd |only basifoR-0.7.7/basifoR/man/update.list.Rd |only 69 files changed, 4209 insertions(+), 841 deletions(-)
Title: Visualizing Decomposition of Differences in Rate Metrics
Description: Provides tools for decomposing differences in rate metrics
between two groups into contributions from individual subgroups and
visualizing them as a "Theseus Plot". Inspired by the story of the
Ship of Theseus, the method replaces subgroup data from one group with
that of another step by step, recalculating the overall metric at each
stage to quantify subgroup contributions. A Theseus Plot combines the
stepwise progression of a waterfall plot with the comparative bars of
a bar chart, offering an intuitive way to understand subgroup-level
effects.
Author: Koji Makiyama [aut, cre, cph],
Kazuyuki Sano [ctb, wdc],
Shinichi Takayanagi [med],
Daisuke Ichikawa [exp],
LY Corporation Analytics Solution Enhancement Team [spn]
Maintainer: Koji Makiyama <hoxo.smile@gmail.com>
Diff between TheseusPlot versions 0.1.1 dated 2025-08-28 and 0.2.0 dated 2026-04-09
DESCRIPTION | 35 +- MD5 | 31 +- NAMESPACE | 29 +- NEWS.md | 17 + R/ship_of_theseus.R | 109 ++++---- README.md | 82 +++++- man/ShipOfTheseus.Rd | 379 +++++++++++++++--------------- man/continuous_config.Rd | 86 +++--- man/create_ship.Rd | 124 ++++----- man/figures/README-factor_column-1.png |only man/figures/README-overview-1.png |binary man/figures/README-plot_carrier-1.png |binary man/figures/README-plot_dep_delay-1.png |binary man/figures/README-plot_dep_delay_n-1.png |binary man/figures/README-plot_origin-1.png |binary man/figures/README-prot_carrier_n-1.png |binary tests |only 17 files changed, 488 insertions(+), 404 deletions(-)
Title: Detection and Spatial Analysis of Tertiary Lymphoid Structures
Description: Fast, reproducible detection and quantitative analysis of
tertiary lymphoid structures (TLS) in multiplexed tissue imaging.
Implements Independent Component Analysis Trace (ICAT) index, local
Ripley's K scanning, automated K Nearest Neighbor (KNN)-based TLS
detection, and T-cell clusters identification as described in
Amiryousefi et al. (2025) <doi:10.1101/2025.09.21.677465>.
Author: Ali Amiryousefi [aut, cre] ,
Jeremiah Wala [aut] ,
Peter Sorger [ctb]
Maintainer: Ali Amiryousefi <ali_amiryousefi@hms.harvard.edu>
Diff between tlsR versions 0.1.2 dated 2025-12-18 and 0.2.0 dated 2026-04-09
tlsR-0.1.2/tlsR/R/detect_TIC.R |only tlsR-0.1.2/tlsR/tests/testthat/test-dummy.R |only tlsR-0.2.0/tlsR/DESCRIPTION | 42 ++ tlsR-0.2.0/tlsR/LICENSE | 4 tlsR-0.2.0/tlsR/MD5 | 56 ++- tlsR-0.2.0/tlsR/NAMESPACE | 35 +- tlsR-0.2.0/tlsR/NEWS.md | 63 ++++ tlsR-0.2.0/tlsR/R/calc_icat.R | 94 ++++-- tlsR-0.2.0/tlsR/R/detect_TLS.R | 243 +++++++++------- tlsR-0.2.0/tlsR/R/detect_tic.R |only tlsR-0.2.0/tlsR/R/plot_TLS.R |only tlsR-0.2.0/tlsR/R/scan_clustering.R | 260 +++++++++--------- tlsR-0.2.0/tlsR/R/summarize_TLS.R |only tlsR-0.2.0/tlsR/R/tlsR-package.R | 33 +- tlsR-0.2.0/tlsR/R/toy_ldata.R | 29 +- tlsR-0.2.0/tlsR/R/utils.R |only tlsR-0.2.0/tlsR/build/partial.rdb |binary tlsR-0.2.0/tlsR/build/vignette.rds |only tlsR-0.2.0/tlsR/data/toy_ldata.rda |binary tlsR-0.2.0/tlsR/inst |only tlsR-0.2.0/tlsR/man/calc_icat.Rd | 30 +- tlsR-0.2.0/tlsR/man/detect_TLS.Rd | 52 ++- tlsR-0.2.0/tlsR/man/detect_tic.Rd | 33 +- tlsR-0.2.0/tlsR/man/plot_TLS.Rd |only tlsR-0.2.0/tlsR/man/scan_clustering.Rd | 57 +++ tlsR-0.2.0/tlsR/man/summarize_TLS.Rd |only tlsR-0.2.0/tlsR/man/tlsR-package.Rd | 34 ++ tlsR-0.2.0/tlsR/man/toy_ldata.Rd | 34 +- tlsR-0.2.0/tlsR/tests/testthat.R | 8 tlsR-0.2.0/tlsR/tests/testthat/helper.R |only tlsR-0.2.0/tlsR/tests/testthat/test-calc_icat.R |only tlsR-0.2.0/tlsR/tests/testthat/test-detect_TLS.R |only tlsR-0.2.0/tlsR/tests/testthat/test-detect_tic.R |only tlsR-0.2.0/tlsR/tests/testthat/test-plot_TLS.R |only tlsR-0.2.0/tlsR/tests/testthat/test-scan_clustering.R |only tlsR-0.2.0/tlsR/tests/testthat/test-summarize_TLS.R |only tlsR-0.2.0/tlsR/vignettes |only 37 files changed, 712 insertions(+), 395 deletions(-)
Title: Flexible Client for the 'Financial Modeling Prep' API
Description: Provides a flexible interface to the 'Financial Modeling Prep' API
<https://site.financialmodelingprep.com/developer/docs>. The package
supports all available endpoints and parameters, enabling R users
to interact with a wide range of financial data.
Author: Christoph Scheuch [aut, cre, cph]
Maintainer: Christoph Scheuch <christoph@tidy-intelligence.com>
Diff between fmpapi versions 1.0.0 dated 2025-10-18 and 1.0.1 dated 2026-04-09
DESCRIPTION | 8 +- MD5 | 10 +- NEWS.md | 8 ++ R/fmp_get.R | 19 ++++- README.md | 83 +++++++++++++++++++++++- tests/testthat/test-fmp_get.R | 144 +++++++++++++++++++++++++++++++++++++++--- 6 files changed, 247 insertions(+), 25 deletions(-)
Title: Conservation Indicators Using Spatial Information
Description: Supports the assessment of the degree of conservation of taxa
in conservation systems, both in ex situ (in genebanks,
botanical gardens, and other repositories), and in situ
(in protected natural areas). Methods are described in
Carver et al. (2021) <doi:10.1111/ecog.05430>, building on
Khoury et al. (2020) <doi:10.1073/pnas.2007029117>,
Khoury et al. (2019) <doi:10.1016/j.ecolind.2018.11.016>,
Khoury et al. (2019) <doi:10.1111/DDI.13008>,
Castaneda-Alvarez et al. (2016) <doi:10.1038/nplants.2016.22>,
and Ramirez-Villegas et al. (2010) <doi:10.1371/journal.pone.0013497>.
Author: Dan Carver [aut, cre, cph] ,
Sarah Gore [aut, cph] ,
Chrystian Sosa [aut, cph] ,
Colin Khoury [aut, cph] ,
Julian Ramirez-Villegas [aut, cph] ,
Valentin Stefan [ctb],
Harold Achicanoy [ctb, cph],
Maria Victoria Diaz [ctb, cph],
Steven Sotelo [ctb, cp [...truncated...]
Maintainer: Dan Carver <carver.dan1@gmail.com>
This is a re-admission after prior archival of version 1.0.2 dated 2021-06-14
Diff between GapAnalysis versions 1.0.2 dated 2021-06-14 and 2.0.0 dated 2026-04-09
GapAnalysis-1.0.2/GapAnalysis/R/GapAnalysis-package.R |only GapAnalysis-1.0.2/GapAnalysis/R/Gbuffer.R |only GapAnalysis-1.0.2/GapAnalysis/R/GetDatasets.R |only GapAnalysis-1.0.2/GapAnalysis/R/OccurrenceCounts.R |only GapAnalysis-1.0.2/GapAnalysis/R/ParamTest.R |only GapAnalysis-1.0.2/GapAnalysis/R/SummaryHTML.R |only GapAnalysis-1.0.2/GapAnalysis/R/indicator.R |only GapAnalysis-1.0.2/GapAnalysis/data/CucurbitaRasters.rda |only GapAnalysis-1.0.2/GapAnalysis/man/GapAnalysis-package.Rd |only GapAnalysis-1.0.2/GapAnalysis/man/Gbuffer.Rd |only GapAnalysis-1.0.2/GapAnalysis/man/GetDatasets.Rd |only GapAnalysis-1.0.2/GapAnalysis/man/OccurrenceCounts.Rd |only GapAnalysis-1.0.2/GapAnalysis/man/ParamTest.Rd |only GapAnalysis-1.0.2/GapAnalysis/man/SummaryHTML.Rd |only GapAnalysis-1.0.2/GapAnalysis/man/indicator.Rd |only GapAnalysis-2.0.0/GapAnalysis/DESCRIPTION | 59 +- GapAnalysis-2.0.0/GapAnalysis/MD5 | 95 +-- GapAnalysis-2.0.0/GapAnalysis/NAMESPACE | 86 +-- GapAnalysis-2.0.0/GapAnalysis/NEWS.md |only GapAnalysis-2.0.0/GapAnalysis/R/ERSex.R | 397 ++++++-------- GapAnalysis-2.0.0/GapAnalysis/R/ERSin.R | 304 +++------- GapAnalysis-2.0.0/GapAnalysis/R/FCSc_mean.R | 205 ++++--- GapAnalysis-2.0.0/GapAnalysis/R/FCSex.R | 197 ++---- GapAnalysis-2.0.0/GapAnalysis/R/FCSin.R | 217 ++----- GapAnalysis-2.0.0/GapAnalysis/R/GRSex.R | 279 ++++----- GapAnalysis-2.0.0/GapAnalysis/R/GRSin.R | 228 ++------ GapAnalysis-2.0.0/GapAnalysis/R/SRSex.R | 94 +-- GapAnalysis-2.0.0/GapAnalysis/R/SRSin.R | 260 +++------ GapAnalysis-2.0.0/GapAnalysis/R/checkEcoregion.R |only GapAnalysis-2.0.0/GapAnalysis/R/checkOccurrences.R |only GapAnalysis-2.0.0/GapAnalysis/R/checkProtectedAreas.R |only GapAnalysis-2.0.0/GapAnalysis/R/checkRasters.R |only GapAnalysis-2.0.0/GapAnalysis/R/data.R | 25 GapAnalysis-2.0.0/GapAnalysis/R/generateCounts.R |only GapAnalysis-2.0.0/GapAnalysis/R/generateEcoSelection.R |only GapAnalysis-2.0.0/GapAnalysis/R/generateGBuffers.R |only GapAnalysis-2.0.0/GapAnalysis/R/getDatasets.R |only GapAnalysis-2.0.0/GapAnalysis/R/globals.R |only GapAnalysis-2.0.0/GapAnalysis/build |only GapAnalysis-2.0.0/GapAnalysis/data/CucurbitaData.rda |binary GapAnalysis-2.0.0/GapAnalysis/data/CucurbitaRasts.rda |only GapAnalysis-2.0.0/GapAnalysis/data/ProtectedAreas.rda |binary GapAnalysis-2.0.0/GapAnalysis/data/ecoregions.rda |binary GapAnalysis-2.0.0/GapAnalysis/inst |only GapAnalysis-2.0.0/GapAnalysis/man/CucurbitaData.Rd | 4 GapAnalysis-2.0.0/GapAnalysis/man/CucurbitaRasters.Rd | 7 GapAnalysis-2.0.0/GapAnalysis/man/ERSex.Rd | 71 +- GapAnalysis-2.0.0/GapAnalysis/man/ERSin.Rd | 67 +- GapAnalysis-2.0.0/GapAnalysis/man/FCSc_mean.Rd | 127 ++-- GapAnalysis-2.0.0/GapAnalysis/man/FCSex.Rd | 92 +-- GapAnalysis-2.0.0/GapAnalysis/man/FCSin.Rd | 90 +-- GapAnalysis-2.0.0/GapAnalysis/man/GRSex.Rd | 67 +- GapAnalysis-2.0.0/GapAnalysis/man/GRSin.Rd | 57 -- GapAnalysis-2.0.0/GapAnalysis/man/ProtectedAreas.Rd | 2 GapAnalysis-2.0.0/GapAnalysis/man/SRSex.Rd | 27 GapAnalysis-2.0.0/GapAnalysis/man/SRSin.Rd | 57 -- GapAnalysis-2.0.0/GapAnalysis/man/checkEcoregion.Rd |only GapAnalysis-2.0.0/GapAnalysis/man/checkOccurrences.Rd |only GapAnalysis-2.0.0/GapAnalysis/man/checkProtectedAreas.Rd |only GapAnalysis-2.0.0/GapAnalysis/man/checksdm.Rd |only GapAnalysis-2.0.0/GapAnalysis/man/ecoregions.Rd | 10 GapAnalysis-2.0.0/GapAnalysis/man/generateCounts.Rd |only GapAnalysis-2.0.0/GapAnalysis/man/generateEcoSelection.Rd |only GapAnalysis-2.0.0/GapAnalysis/man/generateGBuffers.Rd |only GapAnalysis-2.0.0/GapAnalysis/man/getDatasets.Rd |only GapAnalysis-2.0.0/GapAnalysis/vignettes |only 66 files changed, 1398 insertions(+), 1726 deletions(-)
Title: Tool for Unbiased Literature Searching and Gene List Curation
Description: Designed for genomic and proteomic data analysis, enabling unbiased PubMed searching, protein interaction network visualization, and comprehensive data summarization. This package aims to help users identify novel targets within their data sets based on protein network interactions and publication precedence of target's association with research context based on literature precedence. Methods in this package are described in detail in: Douglas et al. (2025) <doi:10.1039/D5MO00160A>. Key functionalities of this package also leverage methodologies from previous works, such as:
- Szklarczyk et al. (2023) <doi:10.1093/nar/gkac1000>
- Winter (2017) <doi:10.32614/RJ-2017-066>.
Author: Cameron Douglas [aut, cre]
Maintainer: Cameron Douglas <camerondouglas@ufl.edu>
Diff between DeSciDe versions 1.0.2 dated 2025-08-31 and 1.0.3 dated 2026-04-09
DESCRIPTION | 10 +++++----- MD5 | 8 ++++---- R/stringdb_functions.R | 2 ++ inst/doc/DeSciDe-vignette.html | 8 ++++---- man/plot_string_network.Rd | 2 ++ 5 files changed, 17 insertions(+), 13 deletions(-)
Title: R Interface to SDMX Web Services
Description: Provides functions to retrieve data and metadata from providers
that disseminate data by means of SDMX web services.
SDMX (Statistical Data and Metadata eXchange) is a standard that
has been developed with the aim of simplifying the exchange of
statistical information.
More about the SDMX standard and the SDMX Web Services
can be found at: <https://sdmx.org>.
Author: Attilio Mattiocco [aut, cre]
Maintainer: Attilio Mattiocco <attilio.mattiocco@bancaditalia.it>
Diff between RJSDMX versions 3.8-0 dated 2025-11-14 and 3.9.0 dated 2026-04-09
DESCRIPTION | 6 +++--- MD5 | 6 +++--- inst/java/SDMX.jar |binary man/addProvider.Rd | 2 +- 4 files changed, 7 insertions(+), 7 deletions(-)
Title: 'DuckDB' High Throughput Sequencing File Formats Reader
Extension
Description: Bundles the 'duckhts' 'DuckDB' extension for reading High Throughput
Sequencing file formats with 'DuckDB'. The 'DuckDB' C extension API
<https://duckdb.org/docs/stable/clients/c/api> and its 'htslib' dependency are
compiled from vendored sources during package installation. James K Bonfield and co-authors (2021) <doi:10.1093/gigascience/giab007>.
Author: Sounkou Mahamane Toure [aut, cre],
James K Bonfield, John Marshall,Petr Danecek ,Heng Li , Valeriu Ohan,
Andrew Whitwham,Thomas Keane , Robert M Davies [ctb] ,
Giulio Genovese [cph] ,
DuckDB C Extension API Authors [ctb]
Maintainer: Sounkou Mahamane Toure <sounkoutoure@gmail.com>
Diff between Rduckhts versions 1.1.4-0.0.1 dated 2026-03-31 and 1.1.6-0.0.2 dated 2026-04-09
DESCRIPTION | 6 MD5 | 43 + NEWS.md | 78 -- README.md |only inst/duckhts_extension/bam_reader.c | 54 +- inst/duckhts_extension/bcf_reader.c | 458 ++++++----------- inst/duckhts_extension/duckhts.c | 16 inst/duckhts_extension/hts_meta_reader.c | 662 ++++++++++++++++++++++++- inst/duckhts_extension/include/vcf_types.h | 28 - inst/duckhts_extension/liftover_udf.c | 110 +++- inst/duckhts_extension/munge_udf.c | 87 ++- inst/extdata/fixed_count_arrays.vcf |only inst/extdata/format_string_list.vcf |only inst/extdata/mapping_number_families.vcf |only inst/extdata/parallel_empty_contigs.bam |only inst/extdata/parallel_empty_contigs.bam.bai |only inst/extdata/parallel_empty_contigs.vcf |only inst/extdata/parallel_empty_contigs.vcf.gz |only inst/extdata/parallel_empty_contigs.vcf.gz.tbi |only inst/extdata/spec_standard_corrections.vcf |only inst/extdata/vcfpp_manifest.tsv |only inst/function_catalog/functions.md | 2 inst/function_catalog/functions.tsv | 2 inst/function_catalog/functions.yaml | 2 inst/tinytest/test_bam_file_offset.R |only inst/tinytest/test_bcf.R |only inst/tinytest/test_integration.R | 15 inst/tinytest/test_liftover.R | 52 + inst/tinytest/test_munge_threading.R |only inst/tinytest/test_parallel_empty_contigs.R |only 30 files changed, 1177 insertions(+), 438 deletions(-)
Title: Thresholded Ordered Sparse CCA
Description: Performs Thresholded Ordered Sparse Canonical Correlation Analysis (CCA). For more details see Senar, N. (2024) <doi:10.1093/bioadv/vbae021> and Senar, N. et al. (2025) <doi:10.48550/arXiv.2503.15140>.
Author: Nuria Senar [aut, cre]
Maintainer: Nuria Senar <n.senarvilladeamigo@amsterdamumc.nl>
Diff between toscca versions 0.1.1 dated 2026-03-24 and 1.0 dated 2026-04-09
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/basic.R | 14 ++++++++++++++ R/main.R | 44 +++++++++++++++----------------------------- 4 files changed, 35 insertions(+), 35 deletions(-)
Title: Get Spanish Origin-Destination Data
Description: Gain seamless access to origin-destination (OD) data from the
Spanish Ministry of Transport, hosted at
<https://www.transportes.gob.es/ministerio/proyectos-singulares/estudios-de-movilidad-con-big-data/opendata-movilidad>.
This package simplifies the management of these large datasets by
providing tools to download zone boundaries, handle associated
origin-destination data, and process it efficiently with the 'duckdb'
database interface. Local caching minimizes repeated downloads,
streamlining workflows for researchers and analysts. Methods
described in Kotov et al. (2026) <doi:10.1177/23998083251415040>.
Extensive documentation is available at
<https://ropenspain.github.io/spanishoddata/index.html>, offering
guides on creating static and dynamic mobility flow visualizations and
transforming large datasets into analysis-ready formats.
Author: Egor Kotov [aut, cre] ,
Robin Lovelace [aut] ,
Eugeni Vidal-Tortosa [ctb]
Maintainer: Egor Kotov <kotov.egor@gmail.com>
Diff between spanishoddata versions 0.2.3 dated 2026-03-23 and 0.2.4 dated 2026-04-09
DESCRIPTION | 6 MD5 | 71 ++-- NEWS.md | 8 R/available-data.R | 37 +- build/partial.rdb |binary inst/extdata/sql-queries/v1-nt-distritos-clean-csv-view-en.sql | 3 inst/extdata/sql-queries/v1-nt-distritos-clean-csv-view-es.sql | 4 inst/extdata/sql-queries/v1-nt-municipios-clean-csv-view-en.sql | 3 inst/extdata/sql-queries/v1-nt-municipios-clean-csv-view-es.sql | 4 inst/extdata/sql-queries/v1-od-distritos-clean-csv-view-en.sql | 12 inst/extdata/sql-queries/v1-od-distritos-clean-csv-view-es.sql | 16 inst/extdata/sql-queries/v1-od-municipios-clean-csv-view-en.sql | 10 inst/extdata/sql-queries/v1-od-municipios-clean-csv-view-es.sql | 16 inst/extdata/sql-queries/v2-nt-distritos-clean-csv-view-en.sql | 4 inst/extdata/sql-queries/v2-nt-distritos-clean-csv-view-es.sql | 9 inst/extdata/sql-queries/v2-nt-gau-clean-csv-view-en.sql | 4 inst/extdata/sql-queries/v2-nt-gau-clean-csv-view-es.sql | 9 inst/extdata/sql-queries/v2-nt-municipios-clean-csv-view-en.sql | 4 inst/extdata/sql-queries/v2-nt-municipios-clean-csv-view-es.sql | 9 inst/extdata/sql-queries/v2-od-distritos-clean-csv-view-en.sql | 6 inst/extdata/sql-queries/v2-od-distritos-clean-csv-view-es.sql | 14 inst/extdata/sql-queries/v2-od-gau-clean-csv-view-en.sql | 12 inst/extdata/sql-queries/v2-od-gau-clean-csv-view-es.sql | 30 + inst/extdata/sql-queries/v2-od-municipios-clean-csv-view-en.sql | 12 inst/extdata/sql-queries/v2-od-municipios-clean-csv-view-es.sql | 30 + inst/extdata/sql-queries/v2-os-distritos-clean-csv-view-en.sql | 4 inst/extdata/sql-queries/v2-os-distritos-clean-csv-view-es.sql | 4 inst/extdata/sql-queries/v2-os-gau-clean-csv-view-en.sql | 4 inst/extdata/sql-queries/v2-os-gau-clean-csv-view-es.sql | 4 inst/extdata/sql-queries/v2-os-municipios-clean-csv-view-en.sql | 4 inst/extdata/sql-queries/v2-os-municipios-clean-csv-view-es.sql | 4 inst/schemaorg.json | 2 tests/testthat/test-available-data-coverage.R | 168 +++++++++- tests/testthat/test-available-data.R | 18 + tests/testthat/test-check-files.R | 19 + tests/testthat/test-download.R | 18 + tests/testthat/test-na.R |only 37 files changed, 449 insertions(+), 133 deletions(-)
Title: Interface for the 'QuickJS-NG' Lightweight 'JavaScript' Engine
Description: An 'R' interface to the 'QuickJS' portable 'JavaScript'
engine. The engine and all 'R' to 'JavaScript' interoperability is bundled
within the package, requiring no dependencies beyond a 'C' compiler.
Author: Andrew R. Johnson [aut, cre] ,
QuickJS Authors [cph] ,
QuickJS-NG Authors [cph]
Maintainer: Andrew R. Johnson <andrew.johnson@arjohnsonau.com>
Diff between QuickJSR versions 1.9.0 dated 2026-01-25 and 1.9.1 dated 2026-04-09
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ build/vignette.rds |binary inst/doc/working_with_js_types.html | 2 +- inst/tinytest/test_to_json_date.R | 2 +- src/include/cpp11/R.hpp | 24 ++++++++++++++++++++++++ src/include/cpp11/function.hpp | 7 +++++-- 7 files changed, 40 insertions(+), 13 deletions(-)
Title: Penalized Regression Calibration for the Dynamic Prediction of
Survival
Description: Computes penalized regression calibration (PRC), a
statistical method for the dynamic prediction of survival when many
longitudinal predictors are available. See Signorelli (2024)
<doi:10.32614/RJ-2024-014> and Signorelli et al. (2021)
<doi:10.1002/sim.9178> for details.
Author: Mirko Signorelli [aut, cre, cph] ,
Pietro Spitali [ctb],
Roula Tsonaka [ctb],
Barbara Vreede [ctb]
Maintainer: Mirko Signorelli <msignorelli.rpackages@gmail.com>
Diff between pencal versions 2.3.0 dated 2025-06-05 and 2.3.1 dated 2026-04-09
pencal-2.3.0/pencal/vignettes/Signorelli2024-compressed.pdf |only pencal-2.3.1/pencal/DESCRIPTION | 12 - pencal-2.3.1/pencal/MD5 | 92 ++++++------ pencal-2.3.1/pencal/R/datasets.R | 20 ++ pencal-2.3.1/pencal/R/fit_lmms.R | 16 +- pencal-2.3.1/pencal/R/fit_mlpmms.R | 4 pencal-2.3.1/pencal/R/fit_prclmm.R | 10 - pencal-2.3.1/pencal/R/fit_prcmlpmm.R | 6 pencal-2.3.1/pencal/R/performance_pencox.R | 5 pencal-2.3.1/pencal/R/performance_prc.R | 7 pencal-2.3.1/pencal/R/print_prclmm.R | 8 - pencal-2.3.1/pencal/R/print_prcmlpmm.R | 8 - pencal-2.3.1/pencal/R/simulate_prclmm_data.R | 2 pencal-2.3.1/pencal/R/simulate_prcmlpmm_data.R | 2 pencal-2.3.1/pencal/R/summarize_lmms.R | 10 - pencal-2.3.1/pencal/R/summarize_mlpmms.R | 5 pencal-2.3.1/pencal/R/summary_prclmm.R | 7 pencal-2.3.1/pencal/R/summary_prcmlpmm.R | 8 - pencal-2.3.1/pencal/R/summary_ranefs.R | 6 pencal-2.3.1/pencal/R/survpred_prclmm.R | 45 +++-- pencal-2.3.1/pencal/R/survpred_prcmlpmm.R | 16 +- pencal-2.3.1/pencal/build/vignette.rds |binary pencal-2.3.1/pencal/data/fitted_prclmm.RData |binary pencal-2.3.1/pencal/data/fitted_prcmlpmm.RData |binary pencal-2.3.1/pencal/data/pbc2data.RData |binary pencal-2.3.1/pencal/inst/NEWS.md | 11 + pencal-2.3.1/pencal/inst/doc/vignette.Rnw | 2 pencal-2.3.1/pencal/inst/doc/vignette.pdf |binary pencal-2.3.1/pencal/man/fit_lmms.Rd | 4 pencal-2.3.1/pencal/man/fit_mlpmms.Rd | 4 pencal-2.3.1/pencal/man/fit_prclmm.Rd | 6 pencal-2.3.1/pencal/man/fit_prcmlpmm.Rd | 6 pencal-2.3.1/pencal/man/fitted_prclmm.Rd | 8 - pencal-2.3.1/pencal/man/fitted_prcmlpmm.Rd | 8 - pencal-2.3.1/pencal/man/pbc2data.Rd | 3 pencal-2.3.1/pencal/man/print.prclmm.Rd | 10 - pencal-2.3.1/pencal/man/print.prcmlpmm.Rd | 10 - pencal-2.3.1/pencal/man/simulate_prclmm_data.Rd | 2 pencal-2.3.1/pencal/man/simulate_prcmlpmm_data.Rd | 2 pencal-2.3.1/pencal/man/summarize_lmms.Rd | 4 pencal-2.3.1/pencal/man/summarize_mlpmms.Rd | 4 pencal-2.3.1/pencal/man/summary.prclmm.Rd | 10 - pencal-2.3.1/pencal/man/summary.prcmlpmm.Rd | 10 - pencal-2.3.1/pencal/man/summary.ranefs.Rd | 6 pencal-2.3.1/pencal/man/survpred_prclmm.Rd | 4 pencal-2.3.1/pencal/man/survpred_prcmlpmm.Rd | 4 pencal-2.3.1/pencal/vignettes/pencal_RJournal_accepted.pdf |only pencal-2.3.1/pencal/vignettes/vignette.Rnw | 2 48 files changed, 202 insertions(+), 207 deletions(-)
Title: Stable Diffusion Image Generation
Description: Provides Stable Diffusion image generation in R using the 'ggmlR'
tensor library. Supports text-to-image and image-to-image generation with
multiple model versions (SD 1.x, SD 2.x, 'SDXL', Flux). Implements the
full inference pipeline including CLIP text encoding, 'UNet' noise removal,
and 'VAE' encoding/decoding. Unified sd_generate() entry point with
automatic strategy selection (direct, tiled sampling, high-resolution fix)
based on output resolution and available 'VRAM'. High-resolution generation
(2K, 4K+) via tiled 'VAE' decoding, tiled diffusion sampling
('MultiDiffusion'), and classic two-pass refinement (text-to-image, then
upscale with image-to-image). Multi-GPU parallel generation via
sd_generate_multi_gpu(). Multi-GPU model parallelism via 'device_layout'
in sd_ctx(): distribute diffusion, text encoders, and 'VAE' across
separate 'Vulkan' devices. Built-in profiling (sd_profile_start(),
sd_profile_summary()) for per-stage timing of text encoding, sampling,
and 'VAE' decode. [...truncated...]
Author: Yuri Baramykov [aut, cre],
Georgi Gerganov [ctb, cph] ,
leejet [ctb, cph] ,
stduhpf [ctb] ,
Green-Sky [ctb] ,
wbruna [ctb] ,
akleine [ctb] ,
Martin Raiber [cph] ,
Rich Geldreich [cph] ,
RAD Game Tools [cph] ,
Valve Software [cph] ,
Alex Evans [cph] , [...truncated...]
Maintainer: Yuri Baramykov <lbsbmsu@mail.ru>
Diff between sd2R versions 0.1.7 dated 2026-03-30 and 0.1.9 dated 2026-04-09
DESCRIPTION | 16 - MD5 | 47 +-- NAMESPACE | 1 NEWS.md | 41 ++ R/RcppExports.R | 40 ++ R/app.R |only R/model_manager.R | 43 ++ R/pipeline.R | 36 ++ README.md | 14 configure | 28 + inst/examples/test_async_eventloop.R |only inst/examples/test_async_httpuv.R |only inst/examples/test_async_repeat.R |only inst/examples/test_async_stress.R |only inst/examples/test_sync_repeat.R |only inst/shiny |only man/sd_app.Rd |only man/sd_list_models.Rd | 2 man/sd_register_model.Rd | 8 man/sd_remove_model.Rd | 2 src/RcppExports.cpp | 111 +++++++ src/sd/ggml_extend.hpp | 15 src/sd/pmid.hpp | 8 src/sd/stable-diffusion.cpp | 9 src/sd/stable-diffusion.h | 1 src/sd2R_interface.cpp | 539 ++++++++++++++++++++++++++++++++++- tests/testthat/helper-registry.R |only tests/testthat/test-app.R |only tests/testthat/test-full-coverage.R |only tools/patch_sd_sources.sh | 89 ++--- 30 files changed, 938 insertions(+), 112 deletions(-)
Title: Interact with Data on 'SurveyCTO'
Description: 'SurveyCTO' is a platform for mobile data collection in offline settings.
The 'rsurveycto' R package uses the 'SurveyCTO' REST API
<https://docs.surveycto.com/05-exporting-and-publishing-data/05-api-access/01.api-access.html>
to read datasets and forms from a 'SurveyCTO' server into R as 'data.table's
and to download file attachments. The package also has limited support to
write datasets to a server.
Author: Jake Hughey [aut, cre],
Robert On [aut]
Maintainer: Jake Hughey <jake@agency.fund>
Diff between rsurveycto versions 0.2.5 dated 2026-02-12 and 0.2.6 dated 2026-04-09
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS.md | 3 +++ R/scto_get_form_responses.R | 3 ++- 4 files changed, 11 insertions(+), 7 deletions(-)
Title: Interface to 'Python'
Description: Interface to 'Python' modules, classes, and functions. When calling
into 'Python', R data types are automatically converted to their equivalent 'Python'
types. When values are returned from 'Python' to R they are converted back to R
types. Compatible with all versions of 'Python' >= 2.7.
Author: Tomasz Kalinowski [ctb, cre],
Kevin Ushey [aut],
JJ Allaire [aut],
RStudio [cph, fnd],
Yuan Tang [aut, cph] ,
Dirk Eddelbuettel [ctb, cph],
Bryan Lewis [ctb, cph],
Sigrid Keydana [ctb],
Ryan Hafen [ctb, cph],
Marcus Geelnard [ctb, cph]
Maintainer: Tomasz Kalinowski <tomasz@posit.co>
Diff between reticulate versions 1.45.0 dated 2026-02-13 and 1.46.0 dated 2026-04-09
DESCRIPTION | 6 ++-- MD5 | 22 ++++++++------ NEWS.md | 12 ++++++++ R/pip.R | 20 +++++++++++-- build/vignette.rds |binary src/pending_py_calls_notifier.cpp | 2 - src/python.cpp | 54 ++++++++++++++++++++---------------- src/r_api.h |only src/reticulate_types.h | 35 ++++++++++++++--------- src/tinythread.h | 4 +- tests/testthat/test-compiled-code.R |only tests/testthat/test-py_require.R | 11 +++++++ tests/testthat/test-python-envs.R | 15 ++++++++++ 13 files changed, 125 insertions(+), 56 deletions(-)
Title: Another Approach to Package Installation
Description: The goal of 'pak' is to make package installation faster and
more reliable. In particular, it performs all HTTP operations in
parallel, so metadata resolution and package downloads are fast.
Metadata and package files are cached on the local disk as well. 'pak'
has a dependency solver, so it finds version conflicts before
performing the installation. This version of 'pak' supports CRAN,
'Bioconductor' and 'GitHub' packages as well.
Author: Gabor Csardi [aut, cre],
Jim Hester [aut],
Posit Software, PBC [cph, fnd] ,
Winston Chang [ctb] ,
Ascent Digital Services [cph, fnd] ,
Hadley Wickham [ctb, cph] ,
Jeroen Ooms [ctb] ,
Maelle Salmon [ctb] ,
Duncan Temple Lang [ctb] ,
Lloyd Hilaiel [cph [...truncated...]
Maintainer: Gabor Csardi <csardi.gabor@gmail.com>
Diff between pak versions 0.9.2 dated 2025-12-22 and 0.9.3 dated 2026-04-09
DESCRIPTION | 8 MD5 | 155 +++++++++---------- NEWS.md | 12 + R/push-packages.R | 5 src/library/curl.patch |only src/library/curl/src/multi.c | 9 - src/library/keyring/DESCRIPTION | 7 src/library/keyring/NEWS.md | 4 src/library/pkgcache/DESCRIPTION | 7 src/library/pkgcache/NEWS.md | 7 src/library/pkgcache/R/metadata-cache.R | 2 src/library/pkgcache/R/onload.R | 15 + src/library/pkgcache/R/packages-gz.R | 14 + src/library/pkgcache/R/platform.R | 5 src/library/pkgcache/inst/WORDLIST | 16 + src/library/pkgcache/inst/fixtures/bioc-config.yaml | 26 +-- src/library/pkgdepends/DESCRIPTION | 6 src/library/pkgdepends/R/aaa-rstudio-detect.R | 16 + src/library/pkgdepends/R/assertions.R | 55 +++++- src/library/pkgdepends/R/assertthat.R | 20 +- src/library/pkgdepends/R/config.R | 52 +++++- src/library/pkgdepends/R/dep-utils.R | 4 src/library/pkgdepends/R/download-progress-bar.R | 36 +++- src/library/pkgdepends/R/download.R | 27 ++- src/library/pkgdepends/R/errors.R | 101 +++++++++--- src/library/pkgdepends/R/gh-app.R | 20 +- src/library/pkgdepends/R/gh-mirror.R | 63 ++++++- src/library/pkgdepends/R/gh-releases.R | 4 src/library/pkgdepends/R/gh-repo.R | 17 +- src/library/pkgdepends/R/ghcr.R | 28 ++- src/library/pkgdepends/R/git-app.R | 12 + src/library/pkgdepends/R/git-auth.R | 36 +++- src/library/pkgdepends/R/git-protocol.R | 27 ++- src/library/pkgdepends/R/git-submodules.R | 24 ++ src/library/pkgdepends/R/install-binary.R | 4 src/library/pkgdepends/R/install-plan.R | 50 ++++-- src/library/pkgdepends/R/install-progress-bar.R | 8 src/library/pkgdepends/R/install-tar.R | 24 ++ src/library/pkgdepends/R/integrity.R | 16 + src/library/pkgdepends/R/iso-date.R | 4 src/library/pkgdepends/R/name-check.R | 44 ++++- src/library/pkgdepends/R/onload.R | 4 src/library/pkgdepends/R/parse-remotes.R | 3 src/library/pkgdepends/R/pkg-downloads.R | 5 src/library/pkgdepends/R/pkg-installation.R | 17 +- src/library/pkgdepends/R/pkg-lockfile.R | 7 src/library/pkgdepends/R/pkg-plan.R | 128 +++++++++------ src/library/pkgdepends/R/pkgdepends-errors.R | 16 + src/library/pkgdepends/R/platform.R | 8 src/library/pkgdepends/R/progress-bars.R | 16 + src/library/pkgdepends/R/repo.R | 28 ++- src/library/pkgdepends/R/resolution-df.R | 8 src/library/pkgdepends/R/resolution-progress-bar.R | 20 +- src/library/pkgdepends/R/resolution.R | 83 ++++++---- src/library/pkgdepends/R/rstudio-detect.R | 12 + src/library/pkgdepends/R/satisfies.R | 8 src/library/pkgdepends/R/scan-deps-print.R | 4 src/library/pkgdepends/R/scan-deps-queries.R | 4 src/library/pkgdepends/R/scan-deps.R | 144 ++++++++++------- src/library/pkgdepends/R/snapshot.R | 12 + src/library/pkgdepends/R/solve.R | 163 ++++++++++++++------ src/library/pkgdepends/R/sysreqs.R | 24 ++ src/library/pkgdepends/R/sysreqs2.R | 24 ++ src/library/pkgdepends/R/tojson.R | 8 src/library/pkgdepends/R/tree-sitter.R | 8 src/library/pkgdepends/R/tree.R | 24 ++ src/library/pkgdepends/R/type-cran.R | 4 src/library/pkgdepends/R/type-git.R | 5 src/library/pkgdepends/R/type-github.R | 12 - src/library/pkgdepends/R/type-installed.R | 14 + src/library/pkgdepends/R/type-local.R | 4 src/library/pkgdepends/R/type-standard.R | 23 ++ src/library/pkgdepends/R/type-url.R | 4 src/library/pkgdepends/R/utils.R | 29 ++- src/library/pkgdepends/R/withr.R | 8 src/library/pkgdepends/R/zzz-pkgdepends-config.R | 19 +- src/library/pkgdepends/src/cleancall.c | 6 src/library/pkgdepends/src/yaml.c | 6 tests/testthat/test-repo.R | 59 +------ 79 files changed, 1358 insertions(+), 603 deletions(-)
Title: Radiocarbon Equations
Description: Provides functions for the calibration of radiocarbon dates, as well as options to calculate different radiocarbon-related timescales (cal BP, cal BC/AD, C14 age, F14C, pMC, D14C) and estimating the effects of contamination or local reservoir offsets (Reimer and Reimer 2001 <doi:10.1017/S0033822200038339>). Supporting publication: Blaauw, M., Reimer, P.J., in press. An open-source toolkit for radiocarbon dating and calibration. Radiocarbon. The methods follow long-established recommendations such as Stuiver and Polach (1977) <doi:10.1017/S0033822200003672> and Reimer et al. (2004) <doi:10.1017/S0033822200033154>. This package uses the calibration curves from the data package 'rintcal'.
Author: Maarten Blaauw [aut, cre] ,
Paula Reimer [ctb] ,
Vegard Martinsen [ctb]
Maintainer: Maarten Blaauw <maarten.blaauw@qub.ac.uk>
Diff between rice versions 2.0.1 dated 2026-03-19 and 2.1.0 dated 2026-04-09
DESCRIPTION | 6 - MD5 | 37 +++++----- NAMESPACE | 2 NEWS.md | 5 + R/calibrate.R | 32 ++++++--- R/marine.R | 2 R/p3k14c.R |only R/plots.R | 17 ++-- R/rice-package.R | 2 R/sets.R | 19 ++++- R/sources.R | 14 ++-- build/partial.rdb |binary build/vignette.rds |binary inst/doc/rice.R | 3 inst/doc/rice.Rmd | 27 ++++++- inst/doc/rice.html | 174 ++++++++++++++++++++++++++++----------------------- man/hpd.Rd | 5 + man/hpd.overlap.Rd | 4 - man/map.dates.Rd |only vignettes/p3k14c.png |only vignettes/rice.Rmd | 27 ++++++- 21 files changed, 234 insertions(+), 142 deletions(-)
Title: Map Pages of Memory
Description: R interface to POSIX mmap and Window's MapViewOfFile.
Author: Jeffrey A. Ryan [aut, cre]
Maintainer: Jeffrey A. Ryan <jeff.a.ryan@gmail.com>
Diff between mmap versions 0.6-24 dated 2026-01-31 and 0.6-26 dated 2026-04-09
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- inst/doc/mmap.pdf |binary man/struct.Rd | 15 +++++++++++++++ src/mmap.c | 8 ++++---- src/mmap.h | 36 ++++++++++++++++++++++++++++++++++++ 6 files changed, 64 insertions(+), 13 deletions(-)
Title: 'HPZone' API Interface
Description: Package that simplifies the use of the 'HPZone' API. Most of the annoying and labor-intensive parts of the interface are handled by wrapper functions. Note that the API and its details are not publicly available. Information can be found at <https://www.ggdghorkennisnet.nl/groep/726-platform-infectieziekte-epidemiologen/documenten/map/9609> for those with access.
Author: Aart Dijkstra [aut, cre, cph]
Maintainer: Aart Dijkstra <a.dijkstra@ggdnog.nl>
Diff between HPZoneAPI versions 1.1.0 dated 2025-11-20 and 1.3.0 dated 2026-04-09
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 23 +++++++++++++++-------- R/HPZone_request.R | 32 ++++++++++++++++++++++++++------ man/HPZone_request_paginated.Rd | 6 +++++- 5 files changed, 53 insertions(+), 22 deletions(-)
Title: Interactive 3D Brain Atlas Visualization
Description: Plot brain atlases as interactive 3D meshes using 'Three.js'
via 'htmlwidgets', or render publication-quality static images through
'rgl' and 'rayshader'. A pipe-friendly API lets you map data onto
brain regions, control camera angles, toggle region edges, overlay
glass brains, and snapshot or ray-trace the result. Additional
atlases are available through the 'ggsegverse' r-universe. Mowinckel
& Vidal-Piñeiro (2020) <doi:10.1177/2515245920928009>.
Author: Athanasia Mo Mowinckel [aut, cre] ,
Didac Vidal-Pineiro [aut] ,
Center for Lifespan Changes in Brain and Cognition , University
of Oslo [cph]
Maintainer: Athanasia Mo Mowinckel <a.m.mowinckel@psykologi.uio.no>
Diff between ggseg3d versions 2.0.0 dated 2026-02-20 and 2.1.0 dated 2026-04-09
ggseg3d-2.0.0/ggseg3d/R/sysdata.rda |only ggseg3d-2.1.0/ggseg3d/DESCRIPTION | 18 - ggseg3d-2.1.0/ggseg3d/LICENSE | 2 ggseg3d-2.1.0/ggseg3d/MD5 | 44 +- ggseg3d-2.1.0/ggseg3d/NAMESPACE | 1 ggseg3d-2.1.0/ggseg3d/NEWS.md | 13 ggseg3d-2.1.0/ggseg3d/R/atlas-types.R | 12 ggseg3d-2.1.0/ggseg3d/R/brain-mesh.R | 104 +++++- ggseg3d-2.1.0/ggseg3d/R/ggseg3d-package.R | 1 ggseg3d-2.1.0/ggseg3d/R/ggseg3d.R | 58 +++ ggseg3d-2.1.0/ggseg3d/R/widget-output.R | 25 + ggseg3d-2.1.0/ggseg3d/README.md | 9 ggseg3d-2.1.0/ggseg3d/inst/WORDLIST | 3 ggseg3d-2.1.0/ggseg3d/inst/htmlwidgets/ggseg3d.js | 2 ggseg3d-2.1.0/ggseg3d/man/build_cerebellar_meshes.Rd |only ggseg3d-2.1.0/ggseg3d/man/figures/README-aseg_3d-plot.png |binary ggseg3d-2.1.0/ggseg3d/man/figures/README-dk_3d-plot.png |binary ggseg3d-2.1.0/ggseg3d/man/ggseg3d-package.Rd | 5 ggseg3d-2.1.0/ggseg3d/man/ggseg3d-shiny.Rd | 14 ggseg3d-2.1.0/ggseg3d/man/prepare_brain_meshes.Rd | 17 + ggseg3d-2.1.0/ggseg3d/man/resolve_brain_mesh.Rd | 18 - ggseg3d-2.1.0/ggseg3d/man/updateGgseg3dBackground.Rd | 10 ggseg3d-2.1.0/ggseg3d/man/updateGgseg3dCamera.Rd | 10 ggseg3d-2.1.0/ggseg3d/tests/testthat/test-ggseg3d.R | 235 ++++++++++++++ 24 files changed, 542 insertions(+), 59 deletions(-)
Title: Multifactor Nonparametric Rank-Based ANOVA with Post Hoc Tests
Description: Multifactor nonparametric analysis of variance based on ranks.
Builds on the Kruskal-Wallis H test and its 2x2 Scheirer-Ray-Hare
extension to handle any factorial designs. Provides effect sizes,
Dunn-Bonferroni pairwise-comparison matrices, and simple-effects
analyses. Tailored for psychology and the social sciences, with
beginner-friendly R syntax and outputs that can be dropped into
journal reports. Includes helpers to export tab-separated results and
compact tables of descriptive statistics (to APA-style reports).
Author: Tomasz Rak [aut, cre],
Szymon Wrzesniowski [aut]
Maintainer: Tomasz Rak <tomasz.rak@upjp2.edu.pl>
Diff between factorH versions 0.5.0 dated 2025-11-01 and 0.6.0 dated 2026-04-09
DESCRIPTION | 8 MD5 | 52 ++-- NAMESPACE | 11 NEWS.md | 14 + R/as_jamovi_srh_full.R |only R/nonpar.datatable.R | 303 +++++++++++++++-------- R/srh.kway.full.R | 212 ++++++++++++---- R/srh.simple.posthoc.R | 129 +++++----- R/srh.simple.posthocs.R | 60 +++- R/write.srh.kway.full.tsv.R | 166 ++++++++---- inst/doc/factorH-dataset.html | 2 inst/doc/factorH-intro.html | 249 +++++++++++-------- inst/doc/factorH-reference.html | 450 ++++++++++++++++++++--------------- inst/doc/factorH-syntax.html | 54 ++-- inst/partials/functions-reference.md | 258 +++++++++++--------- inst/partials/functions-short.md | 58 ++-- inst/partials/intro.md | 171 ++++++++----- inst/partials/syntax.md | 41 +-- man/as_jamovi_srh_full.Rd |only man/factorH.Rd | 237 +++++++++++------- man/factorH_reference.Rd | 388 +++++++++++++++++------------- man/factorH_syntax.Rd | 48 ++- man/nonpar.datatable.Rd | 69 ++++- man/srh.kway.full.Rd | 58 ++++ man/srh.simple.posthoc.Rd | 42 +-- man/srh.simple.posthocs.Rd | 35 +- man/write.srh.kway.full.tsv.Rd | 2 tests/testthat/test-srh.kway.full.R | 38 ++ 28 files changed, 1959 insertions(+), 1196 deletions(-)
Title: Parametric Mortality Curve Fitting and Mortality Forecasting
Tools
Description: Provides tools for fitting parametric mortality curves. Implements multiple optimisation strategies to enhance robustness and stability of parameter estimation. Offers tools for forecasting mortality rates guided by mortality curves.
For modelling details see:
Tabeau (2001) <doi:10.1007/0-306-47562-6_1>,
Renshaw and Haberman (2006) <doi:10.1016/j.insmatheco.2005.12.001>,
Cairns et al. (2009) <doi:10.1080/10920277.2009.10597538>.
Author: Jackie Li [aut, cre, cph]
Maintainer: Jackie Li <jackieli@smu.edu.sg>
Diff between demofit versions 0.1.1 dated 2026-03-16 and 0.1.2 dated 2026-04-09
DESCRIPTION | 6 +++--- MD5 | 55 ++++++++++++++++++++++++++++++------------------------- NAMESPACE | 8 ++++++++ NEWS.md |only R/APCS.R | 2 +- R/CBDCS.R | 8 ++++---- R/CBDQCS.R | 8 ++++---- R/CBDS.R | 8 ++++---- R/CFMS.R |only R/ENS.R |only R/LCS.R | 2 +- R/MC.R | 4 ++-- R/RHS.R | 2 +- R/STARS.R | 2 +- R/cfit13.R | 16 +++++++++++++--- R/cfit8.R | 4 ++-- R/fit13.R | 16 +++++++++++++--- R/fit8.R | 6 +++--- R/modelS3.R | 4 +++- inst/CITATION | 2 +- man/APCS.Rd | 2 +- man/CBDCS.Rd | 11 ++++------- man/CBDQCS.Rd | 11 ++++------- man/CBDS.Rd | 11 ++++------- man/CFMS.Rd |only man/ENS.Rd |only man/LCS.Rd | 2 +- man/MC.Rd | 4 ++-- man/RHS.Rd | 2 +- man/STARS.Rd | 2 +- man/modelS3.Rd | 2 +- 31 files changed, 113 insertions(+), 87 deletions(-)
Title: A Unified Tidy Interface to R's Machine Learning Ecosystem
Description: Provides a unified tidyverse-compatible interface to R's machine
learning ecosystem - from data ingestion to model publishing. The tl_read()
family reads data from files ('CSV', 'Excel', 'Parquet', 'JSON'), databases
('SQLite', 'PostgreSQL', 'MySQL', 'BigQuery'), and cloud sources ('S3',
'GitHub', 'Kaggle'). The tl_model() function wraps established
implementations from 'glmnet', 'randomForest', 'xgboost', 'e1071', 'rpart',
'gbm', 'nnet', 'cluster', 'dbscan', and others with consistent function
signatures and tidy tibble output. Results flow into unified 'ggplot2'-based
visualization and optional formatted 'gt' tables via the tl_table() family.
The underlying algorithms are unchanged; 'tidylearn' simply makes them
easier to use together. Access raw model objects via the $fit slot for
package-specific functionality.
Methods include random forests Breiman (2001) <doi:10.1023/A:1010933404324>,
LASSO regression Tibshirani (1996) <doi:10.1111/j.2517-6161.1996.tb02080.x>,
elastic [...truncated...]
Author: Cesaire Tobias [aut, cre]
Maintainer: Cesaire Tobias <cesaire@sheetsolved.com>
Diff between tidylearn versions 0.2.0 dated 2026-03-16 and 0.3.0 dated 2026-04-09
DESCRIPTION | 60 MD5 | 522 ++++--- NAMESPACE | 565 ++++---- NEWS.md | 137 ++ R/core.R | 216 ++- R/diagnostics.R | 2208 +++++++++++++++++---------------- R/integration.R | 106 + R/interactions.R | 1056 ++++++++------- R/metrics.R | 665 +++++---- R/model-selection.R | 690 +++++----- R/pipeline.R | 1626 ++++++++++++------------ R/preprocessing.R | 682 +++++----- R/read-backends.R |only R/read.R |only R/supervised-classification.R | 110 + R/supervised-deep-learning.R | 881 +++++++------ R/supervised-neural-networks.R | 682 +++++----- R/supervised-regression.R | 281 +++- R/supervised-regularization.R | 1296 +++++++++++-------- R/supervised-svm.R | 830 +++++++----- R/supervised-trees.R | 1196 +++++++++-------- R/supervised-xgboost.R | 1551 ++++++++++++----------- R/tables.R | 57 R/tuning.R | 1988 +++++++++++++++++------------ R/unsupervised-clustering.R | 974 +++++++------- R/unsupervised-dbscan.R | 764 ++++++----- R/unsupervised-distance.R | 436 +++--- R/unsupervised-hclust.R | 605 ++++----- R/unsupervised-market-basket.R | 917 +++++++------ R/unsupervised-mds.R | 775 ++++++----- R/unsupervised-pca.R | 863 ++++++------ R/unsupervised-validation.R | 921 +++++++------ R/utils.R | 306 ++-- R/visualization.R | 253 ++- R/workflows.R | 373 ++++- README.md | 589 ++++---- build/vignette.rds |binary inst/WORDLIST |only inst/doc/automl.R | 166 +- inst/doc/automl.Rmd | 962 +++++++------- inst/doc/automl.html | 604 +++++---- inst/doc/data-ingestion.R |only inst/doc/data-ingestion.Rmd |only inst/doc/data-ingestion.html |only inst/doc/getting-started.R | 10 inst/doc/getting-started.Rmd | 510 +++---- inst/doc/getting-started.html | 54 inst/doc/integration-workflows.R | 112 - inst/doc/integration-workflows.Rmd | 842 ++++++------ inst/doc/integration-workflows.html | 230 +-- inst/doc/supervised-learning.R | 27 inst/doc/supervised-learning.Rmd | 717 +++++----- inst/doc/supervised-learning.html | 73 - inst/doc/unsupervised-learning.R | 23 inst/doc/unsupervised-learning.Rmd | 833 ++++++------ inst/doc/unsupervised-learning.html | 41 inst/examples/unified_workflow.R | 363 ++--- man/augment_dbscan.Rd | 47 man/augment_hclust.Rd | 54 man/augment_kmeans.Rd | 46 man/augment_pam.Rd | 46 man/augment_pca.Rd | 50 man/calc_validation_metrics.Rd | 53 man/calc_wss.Rd | 50 man/compare_clusterings.Rd | 52 man/compare_distances.Rd | 44 man/create_cluster_dashboard.Rd | 59 man/explore_dbscan_params.Rd | 50 man/filter_rules_by_item.Rd | 53 man/find_related_items.Rd | 57 man/get_pca_loadings.Rd | 46 man/get_pca_variance.Rd | 42 man/inspect_rules.Rd | 57 man/optimal_clusters.Rd | 55 man/optimal_hclust_k.Rd | 56 man/plot.tidylearn_eda.Rd | 45 man/plot.tidylearn_model.Rd | 49 man/plot_cluster_comparison.Rd | 55 man/plot_cluster_sizes.Rd | 44 man/plot_clusters.Rd | 82 - man/plot_dendrogram.Rd | 57 man/plot_distance_heatmap.Rd | 56 man/plot_elbow.Rd | 48 man/plot_gap_stat.Rd | 46 man/plot_knn_dist.Rd | 52 man/plot_mds.Rd | 57 man/plot_silhouette.Rd | 44 man/plot_variance_explained.Rd | 45 man/predict.tidylearn_model.Rd | 60 man/predict.tidylearn_stratified.Rd | 50 man/predict.tidylearn_transfer.Rd | 50 man/print.tidy_apriori.Rd | 48 man/print.tidy_dbscan.Rd | 45 man/print.tidy_gap.Rd | 45 man/print.tidy_hclust.Rd | 45 man/print.tidy_kmeans.Rd | 45 man/print.tidy_mds.Rd | 45 man/print.tidy_pam.Rd | 45 man/print.tidy_pca.Rd | 45 man/print.tidy_silhouette.Rd | 47 man/print.tidylearn_automl.Rd | 38 man/print.tidylearn_data.Rd |only man/print.tidylearn_eda.Rd | 44 man/print.tidylearn_model.Rd | 44 man/print.tidylearn_pipeline.Rd | 44 man/recommend_products.Rd | 58 man/standardize_data.Rd | 49 man/suggest_eps.Rd | 67 - man/summarize_rules.Rd | 46 man/summary.tidylearn_model.Rd | 45 man/summary.tidylearn_pipeline.Rd | 45 man/tidy_apriori.Rd | 4 man/tidy_clara.Rd | 74 - man/tidy_cutree.Rd | 50 man/tidy_dbscan.Rd | 85 - man/tidy_dendrogram.Rd | 54 man/tidy_dist.Rd | 56 man/tidy_gap_stat.Rd | 65 man/tidy_gower.Rd | 86 - man/tidy_hclust.Rd | 78 - man/tidy_kmeans.Rd | 92 - man/tidy_knn_dist.Rd | 51 man/tidy_mds.Rd | 76 - man/tidy_mds_classical.Rd | 58 man/tidy_mds_kruskal.Rd | 55 man/tidy_mds_sammon.Rd | 55 man/tidy_mds_smacof.Rd | 60 man/tidy_pam.Rd | 75 - man/tidy_pca.Rd | 90 - man/tidy_pca_biplot.Rd | 81 - man/tidy_pca_screeplot.Rd | 50 man/tidy_rules.Rd | 46 man/tidy_silhouette.Rd | 8 man/tidy_silhouette_analysis.Rd | 76 - man/tidylearn-core.Rd | 28 man/tidylearn-diagnostics.Rd | 17 man/tidylearn-model-selection.Rd | 17 man/tidylearn-read-backends.Rd |only man/tidylearn-read.Rd |only man/tidylearn-regularization.Rd | 17 man/tidylearn-svm.Rd | 17 man/tidylearn-tables.Rd | 23 man/tidylearn-workflows.Rd |only man/tl_add_cluster_features.Rd | 66 man/tl_anomaly_aware.Rd | 93 - man/tl_auto_interactions.Rd | 78 - man/tl_auto_ml.Rd | 146 +- man/tl_calc_classification_metrics.Rd | 79 - man/tl_check_assumptions.Rd | 54 man/tl_compare_cv.Rd | 67 - man/tl_compare_pipeline_models.Rd | 41 man/tl_cv.Rd | 64 man/tl_dashboard.Rd | 51 man/tl_default_param_grid.Rd | 53 man/tl_detect_outliers.Rd | 83 - man/tl_diagnostic_dashboard.Rd | 71 - man/tl_evaluate.Rd | 52 man/tl_explore.Rd | 70 - man/tl_fit_boost.Rd | 92 - man/tl_fit_deep.Rd | 105 - man/tl_fit_elastic_net.Rd | 80 - man/tl_fit_forest.Rd | 77 - man/tl_fit_lasso.Rd | 80 - man/tl_fit_nn.Rd | 83 - man/tl_fit_regularized.Rd | 80 - man/tl_fit_ridge.Rd | 80 - man/tl_fit_svm.Rd | 99 - man/tl_fit_tree.Rd | 77 - man/tl_fit_xgboost.Rd | 132 + man/tl_get_best_model.Rd | 45 man/tl_influence_measures.Rd | 68 - man/tl_interaction_effects.Rd | 54 man/tl_load_pipeline.Rd | 43 man/tl_model.Rd | 121 - man/tl_pipeline.Rd | 78 - man/tl_plot_actual_predicted.Rd | 45 man/tl_plot_calibration.Rd | 49 man/tl_plot_confusion.Rd | 45 man/tl_plot_cv_comparison.Rd | 48 man/tl_plot_cv_results.Rd | 39 man/tl_plot_deep_architecture.Rd | 47 man/tl_plot_deep_history.Rd | 51 man/tl_plot_gain.Rd | 56 man/tl_plot_importance_comparison.Rd | 49 man/tl_plot_importance_regularized.Rd | 54 man/tl_plot_influence.Rd | 80 - man/tl_plot_interaction.Rd | 74 - man/tl_plot_intervals.Rd | 53 man/tl_plot_lift.Rd | 56 man/tl_plot_model_comparison.Rd | 54 man/tl_plot_nn_architecture.Rd | 48 man/tl_plot_nn_tuning.Rd | 38 man/tl_plot_partial_dependence.Rd | 53 man/tl_plot_precision_recall.Rd | 45 man/tl_plot_regularization_cv.Rd | 48 man/tl_plot_regularization_path.Rd | 49 man/tl_plot_residuals.Rd | 45 man/tl_plot_roc.Rd | 45 man/tl_plot_svm_boundary.Rd | 60 man/tl_plot_svm_tuning.Rd | 47 man/tl_plot_tree.Rd | 45 man/tl_plot_tuning_results.Rd | 75 - man/tl_plot_xgboost_importance.Rd | 54 man/tl_plot_xgboost_shap_dependence.Rd | 64 man/tl_plot_xgboost_shap_summary.Rd | 56 man/tl_plot_xgboost_tree.Rd | 43 man/tl_predict_boost.Rd | 54 man/tl_predict_deep.Rd | 49 man/tl_predict_forest.Rd | 49 man/tl_predict_linear.Rd | 53 man/tl_predict_nn.Rd | 49 man/tl_predict_pipeline.Rd | 64 man/tl_predict_polynomial.Rd | 53 man/tl_predict_regularized.Rd | 54 man/tl_predict_svm.Rd | 49 man/tl_predict_tree.Rd | 49 man/tl_predict_xgboost.Rd | 54 man/tl_prepare_data.Rd | 114 - man/tl_read.Rd |only man/tl_read_bigquery.Rd |only man/tl_read_csv.Rd |only man/tl_read_db.Rd |only man/tl_read_dir.Rd |only man/tl_read_excel.Rd |only man/tl_read_github.Rd |only man/tl_read_json.Rd |only man/tl_read_kaggle.Rd |only man/tl_read_mysql.Rd |only man/tl_read_parquet.Rd |only man/tl_read_postgres.Rd |only man/tl_read_rdata.Rd |only man/tl_read_rds.Rd |only man/tl_read_s3.Rd |only man/tl_read_sqlite.Rd |only man/tl_read_tsv.Rd |only man/tl_read_zip.Rd |only man/tl_reduce_dimensions.Rd | 100 - man/tl_run_pipeline.Rd | 52 man/tl_save_pipeline.Rd | 45 man/tl_semisupervised.Rd | 92 - man/tl_split.Rd | 64 man/tl_step_selection.Rd | 84 - man/tl_stratified_models.Rd | 87 - man/tl_table.Rd | 62 man/tl_table_clusters.Rd | 60 man/tl_table_coefficients.Rd | 60 man/tl_table_comparison.Rd | 64 man/tl_table_confusion.Rd | 56 man/tl_table_importance.Rd | 60 man/tl_table_loadings.Rd | 60 man/tl_table_metrics.Rd | 60 man/tl_table_variance.Rd | 60 man/tl_test_interactions.Rd | 96 - man/tl_test_model_difference.Rd | 67 - man/tl_transfer_learning.Rd | 80 - man/tl_tune_deep.Rd | 106 - man/tl_tune_grid.Rd | 99 - man/tl_tune_nn.Rd | 78 - man/tl_tune_random.Rd | 113 - man/tl_tune_xgboost.Rd | 85 - man/tl_version.Rd | 3 man/tl_xgboost_shap.Rd | 57 man/visualize_rules.Rd | 59 tests/testthat/Rplots.pdf |only tests/testthat/test-diagnostics.R |only tests/testthat/test-integration.R | 361 ++--- tests/testthat/test-preprocessing.R | 281 ++-- tests/testthat/test-read.R |only tests/testthat/test-supervised.R | 297 ++-- tests/testthat/test-tuning.R |only tests/testthat/test-unsupervised.R | 308 ++-- tests/testthat/test-visualization.R |only tests/testthat/test-workflows.R | 242 +-- vignettes/automl.Rmd | 962 +++++++------- vignettes/data-ingestion.Rmd |only vignettes/getting-started.Rmd | 510 +++---- vignettes/integration-workflows.Rmd | 842 ++++++------ vignettes/supervised-learning.Rmd | 717 +++++----- vignettes/unsupervised-learning.Rmd | 833 ++++++------ 279 files changed, 25956 insertions(+), 21013 deletions(-)
Title: Efficiently Retrieve and Process Satellite Imagery
Description: Downloads spatial data from spatiotemporal asset catalogs
('STAC'), computes standard spectral indices from the Awesome Spectral
Indices project (Montero et al. (2023) <doi:10.1038/s41597-023-02096-0>)
against raster data, and glues the outputs together into predictor bricks.
Methods focus on interoperability with the broader spatial ecosystem;
function arguments and outputs use classes from 'sf' and 'terra', and data
downloading functions support complex 'CQL2' queries using 'rstac'.
Author: Michael Mahoney [aut, cre] ,
Felipe Carvalho [rev] for
rOpenSci, see
<https://github.com/ropensci/software-review/issues/636>),
Michael Sumner [rev] for
rOpenSci, see
<https://github.com/ropensci/software-review/issues/636>),
Permian Global [cph, f [...truncated...]
Maintainer: Michael Mahoney <mike.mahoney.218@gmail.com>
Diff between rsi versions 0.3.2 dated 2025-01-21 and 0.3.3 dated 2026-04-09
DESCRIPTION | 11 MD5 | 70 ++--- NEWS.md | 4 R/0-globals.R | 4 R/calculate_indices.R | 55 +++- R/check_type_and_length.R | 16 - R/deprecated.R | 16 - R/download.R | 70 +++-- R/filters.R | 22 + R/get_stac_data.R | 379 ++++++++++++++++-------------- R/landsat_platform_filter.R | 3 R/mask_functions.R | 15 - R/misc.R | 12 R/query_and_sign.R | 22 + R/spectral_indices.R | 13 - R/stack_rasters.R | 102 ++++---- R/sysdata.rda |binary README.md | 5 build/partial.rdb |binary build/vignette.rds |binary inst/doc/rsi.html | 2 man/calculate_indices.Rd | 32 ++ man/figures/README-unnamed-chunk-3-1.png |binary man/figures/README-unnamed-chunk-4-1.png |binary man/figures/README-unnamed-chunk-5-1.png |binary man/figures/README-unnamed-chunk-7-1.png |binary man/figures/README-unnamed-chunk-8-1.png |binary man/get_stac_data.Rd | 6 tests/testthat/_snaps/spectral_indices.md | 12 tests/testthat/test-calculate_indices.R | 25 + tests/testthat/test-filters.R | 34 ++ tests/testthat/test-get_stac_data.R | 15 - tests/testthat/test-mask_functions.R | 25 + tests/testthat/test-misc.R | 9 tests/testthat/test-spectral_indices.R | 40 ++- tests/testthat/test-stack_rasters.R | 16 + 36 files changed, 649 insertions(+), 386 deletions(-)
Title: Simple Interactive Controls for R using the 'tcltk' Package
Description: A set of functions to build simple
GUI controls for R functions. These are built on the 'tcltk' package.
Uses could include changing a parameter on a graph by animating it
with a slider or a "doublebutton", up to more sophisticated control
panels.
Some functions for specific graphical tasks, referred to as 'cartoons',
are provided.
Author: Adrian Bowman [aut, cre, cph],
Ewan Crawford [aut],
Gavin Alexander [aut],
Richard Bowman [aut]
Maintainer: Adrian Bowman <adrian.bowman@glasgow.ac.uk>
Diff between rpanel versions 1.1-6.1 dated 2026-03-13 and 1.1-6.3 dated 2026-04-09
ChangeLog | 2 + DESCRIPTION | 8 ++--- MD5 | 28 +++++++++---------- R/rp-plot4d.r | 26 ++++++++++------- R/rp_colours.R | 10 +++--- R/rp_datalink.R | 16 +++++++--- R/rp_drop1.R | 2 - R/rp_sample.r | 1 R/rpanel.r | 2 - tests/testthat/test-rp.coefficients.R | 3 -- tests/testthat/test-rp.datalink.R | 1 tests/testthat/test-rp.drop1.R | 2 - tests/testthat/test-rp.lm.R | 21 ++++++-------- tests/testthat/test-rp.plot4d.R | 50 +++++++++++++++++----------------- tests/testthat/test-rp.sample.r | 4 ++ 15 files changed, 96 insertions(+), 80 deletions(-)
Title: Population Fisher Information Matrix
Description: Evaluate or optimize designs for nonlinear mixed effects models using the Fisher Information matrix. Methods used in the package refer to
Mentré F, Mallet A, Baccar D (1997) <doi:10.1093/biomet/84.2.429>,
Retout S, Comets E, Samson A, Mentré F (2007) <doi:10.1002/sim.2910>,
Bazzoli C, Retout S, Mentré F (2009) <doi:10.1002/sim.3573>,
Le Nagard H, Chao L, Tenaillon O (2011) <doi:10.1186/1471-2148-11-326>,
Combes FP, Retout S, Frey N, Mentré F (2013) <doi:10.1007/s11095-013-1079-3> and
Seurat J, Tang Y, Mentré F, Nguyen TT (2021) <doi:10.1016/j.cmpb.2021.106126>.
Author: Romain Leroux [aut, cre] ,
France Mentre [aut] ,
Jeremy Seurat [ctb]
Maintainer: Romain Leroux <romainlerouxPFIM@gmail.com>
Diff between PFIM versions 7.0.2 dated 2026-01-30 and 7.0.3 dated 2026-04-09
PFIM-7.0.2/PFIM/inst/doc/Example01.R |only PFIM-7.0.2/PFIM/inst/doc/Example01.Rmd |only PFIM-7.0.2/PFIM/inst/doc/Example01.html |only PFIM-7.0.2/PFIM/inst/doc/Example02.R |only PFIM-7.0.2/PFIM/inst/doc/Example02.Rmd |only PFIM-7.0.2/PFIM/inst/doc/Example02.html |only PFIM-7.0.2/PFIM/man/Combined1.Rd |only PFIM-7.0.2/PFIM/man/getFim.Rd |only PFIM-7.0.2/PFIM/vignettes/Example01.Rmd |only PFIM-7.0.2/PFIM/vignettes/Example02.Rmd |only PFIM-7.0.3/PFIM/DESCRIPTION | 10 PFIM-7.0.3/PFIM/MD5 | 375 +-- PFIM-7.0.3/PFIM/NAMESPACE | 9 PFIM-7.0.3/PFIM/NEWS.md | 177 - PFIM-7.0.3/PFIM/R/Administration.R | 89 PFIM-7.0.3/PFIM/R/AdministrationConstraints.R | 44 PFIM-7.0.3/PFIM/R/Arm.R | 872 ++++---- PFIM-7.0.3/PFIM/R/BayesianFim.R | 212 +- PFIM-7.0.3/PFIM/R/Combined1.R | 113 - PFIM-7.0.3/PFIM/R/Constant.R | 114 - PFIM-7.0.3/PFIM/R/Design.R | 567 +++-- PFIM-7.0.3/PFIM/R/Distribution.R | 48 PFIM-7.0.3/PFIM/R/Evaluation.R | 642 ++---- PFIM-7.0.3/PFIM/R/FedorovWynnAlgorithm.R | 255 +- PFIM-7.0.3/PFIM/R/Fim.R | 47 PFIM-7.0.3/PFIM/R/IndividualFim.R | 232 -- PFIM-7.0.3/PFIM/R/LibraryOfModels.R | 28 PFIM-7.0.3/PFIM/R/LibraryOfPDModels.R | 169 - PFIM-7.0.3/PFIM/R/LibraryOfPKModels.R | 805 ++++--- PFIM-7.0.3/PFIM/R/LogNormal.R | 42 PFIM-7.0.3/PFIM/R/Model.R | 456 ++-- PFIM-7.0.3/PFIM/R/ModelAnalytic.R | 49 PFIM-7.0.3/PFIM/R/ModelAnalyticInfusion.R | 59 PFIM-7.0.3/PFIM/R/ModelAnalyticInfusionSteadyState.R | 781 +++---- PFIM-7.0.3/PFIM/R/ModelAnalyticSteadyState.R | 59 PFIM-7.0.3/PFIM/R/ModelError.R | 218 +- PFIM-7.0.3/PFIM/R/ModelInfusion.R | 85 PFIM-7.0.3/PFIM/R/ModelODE.R | 87 PFIM-7.0.3/PFIM/R/ModelODEBolus.R | 552 ++--- PFIM-7.0.3/PFIM/R/ModelODEDoseInEquations.R | 480 ++-- PFIM-7.0.3/PFIM/R/ModelODEDoseNotInEquations.R | 94 PFIM-7.0.3/PFIM/R/ModelODEInfusion.R | 93 PFIM-7.0.3/PFIM/R/ModelODEInfusionDoseInEquation.R | 615 +++--- PFIM-7.0.3/PFIM/R/ModelParameter.R | 140 - PFIM-7.0.3/PFIM/R/MultiplicativeAlgorithm.R | 191 + PFIM-7.0.3/PFIM/R/Normal.R | 28 PFIM-7.0.3/PFIM/R/Optimization.R | 1007 ++++++---- PFIM-7.0.3/PFIM/R/PFIM-package.R | 134 - PFIM-7.0.3/PFIM/R/PFIMProject.R | 508 ++++- PFIM-7.0.3/PFIM/R/PGBOAlgorithm.R | 767 ++++--- PFIM-7.0.3/PFIM/R/PSOAlgorithm.R | 169 + PFIM-7.0.3/PFIM/R/PopulationFim.R | 348 ++- PFIM-7.0.3/PFIM/R/Proportional.R | 102 - PFIM-7.0.3/PFIM/R/SamplingTimeConstraints.R | 357 ++- PFIM-7.0.3/PFIM/R/SamplingTimes.R | 43 PFIM-7.0.3/PFIM/R/SimplexAlgorithm.R | 951 +++++---- PFIM-7.0.3/PFIM/R/plotMethods.R |only PFIM-7.0.3/PFIM/R/utils.R |only PFIM-7.0.3/PFIM/R/zzz.R | 8 PFIM-7.0.3/PFIM/build/vignette.rds |binary PFIM-7.0.3/PFIM/inst/CITATION | 13 PFIM-7.0.3/PFIM/inst/doc/Design_Evaluation_and_Optimization_in_Continuous_Space.R |only PFIM-7.0.3/PFIM/inst/doc/Design_Evaluation_and_Optimization_in_Continuous_Space.Rmd |only PFIM-7.0.3/PFIM/inst/doc/Design_Evaluation_and_Optimization_in_Continuous_Space.html |only PFIM-7.0.3/PFIM/inst/doc/Design_Evaluation_and_Optimization_in_Discrete_Space.R |only PFIM-7.0.3/PFIM/inst/doc/Design_Evaluation_and_Optimization_in_Discrete_Space.Rmd |only PFIM-7.0.3/PFIM/inst/doc/Design_Evaluation_and_Optimization_in_Discrete_Space.html |only PFIM-7.0.3/PFIM/inst/doc/LibraryOfModels.R | 88 PFIM-7.0.3/PFIM/inst/doc/LibraryOfModels.html | 5 PFIM-7.0.3/PFIM/man/Administration.Rd | 76 PFIM-7.0.3/PFIM/man/AdministrationConstraints.Rd | 36 PFIM-7.0.3/PFIM/man/Arm.Rd | 78 PFIM-7.0.3/PFIM/man/BayesianFim.Rd | 44 PFIM-7.0.3/PFIM/man/Combined.Rd |only PFIM-7.0.3/PFIM/man/Constant.Rd | 40 PFIM-7.0.3/PFIM/man/Dcriterion.Rd | 14 PFIM-7.0.3/PFIM/man/Design.Rd | 69 PFIM-7.0.3/PFIM/man/Distribution.Rd | 30 PFIM-7.0.3/PFIM/man/Evaluation.Rd | 66 PFIM-7.0.3/PFIM/man/FedorovWynnAlgorithm.Rd | 106 - PFIM-7.0.3/PFIM/man/FedorovWynnAlgorithm_Rcpp.Rd | 30 PFIM-7.0.3/PFIM/man/Fim.Rd | 28 PFIM-7.0.3/PFIM/man/IndividualFim.Rd | 33 PFIM-7.0.3/PFIM/man/LibraryOfModels.Rd | 18 PFIM-7.0.3/PFIM/man/LibraryOfPDModels.Rd | 24 PFIM-7.0.3/PFIM/man/LibraryOfPKModels.Rd | 22 PFIM-7.0.3/PFIM/man/LogNormal.Rd | 19 PFIM-7.0.3/PFIM/man/Model.Rd | 44 PFIM-7.0.3/PFIM/man/ModelAnalytic.Rd | 40 PFIM-7.0.3/PFIM/man/ModelAnalyticInfusion.Rd | 40 PFIM-7.0.3/PFIM/man/ModelAnalyticInfusionSteadyState.Rd | 41 PFIM-7.0.3/PFIM/man/ModelAnalyticSteadyState.Rd | 41 PFIM-7.0.3/PFIM/man/ModelError.Rd | 31 PFIM-7.0.3/PFIM/man/ModelInfusion.Rd | 40 PFIM-7.0.3/PFIM/man/ModelODE.Rd | 40 PFIM-7.0.3/PFIM/man/ModelODEBolus.Rd | 40 PFIM-7.0.3/PFIM/man/ModelODEDoseInEquations.Rd | 51 PFIM-7.0.3/PFIM/man/ModelODEDoseNotInEquations.Rd | 54 PFIM-7.0.3/PFIM/man/ModelODEInfusion.Rd | 44 PFIM-7.0.3/PFIM/man/ModelODEInfusionDoseInEquation.Rd | 53 PFIM-7.0.3/PFIM/man/ModelParameter.Rd | 59 PFIM-7.0.3/PFIM/man/MultiplicativeAlgorithm.Rd | 100 PFIM-7.0.3/PFIM/man/MultiplicativeAlgorithm_Rcpp.Rd | 41 PFIM-7.0.3/PFIM/man/Normal.Rd | 23 PFIM-7.0.3/PFIM/man/Optimization.Rd | 197 + PFIM-7.0.3/PFIM/man/PFIMProject.Rd | 68 PFIM-7.0.3/PFIM/man/PGBOAlgorithm.Rd | 114 - 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Title: A Common API to Modeling and Analysis Functions
Description: A common interface is provided to allow users to specify a
model without having to remember the different argument names across
different functions or computational engines (e.g. 'R', 'Spark',
'Stan', 'H2O', etc).
Author: Max Kuhn [cre, aut] ,
Davis Vaughan [aut],
Emil Hvitfeldt [ctb],
Posit Software, PBC [cph, fnd]
Maintainer: Max Kuhn <max@posit.co>
Diff between parsnip versions 1.4.1 dated 2026-01-11 and 1.5.0 dated 2026-04-09
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parsnip-1.5.0/parsnip/R/decision_tree_partykit.R | 2 parsnip-1.5.0/parsnip/R/decision_tree_rpartScore.R |only parsnip-1.5.0/parsnip/R/descriptors.R | 7 parsnip-1.5.0/parsnip/R/engine_docs.R | 7 parsnip-1.5.0/parsnip/R/engines.R | 5 parsnip-1.5.0/parsnip/R/fit_helpers.R | 4 parsnip-1.5.0/parsnip/R/gen_additive_mod_vgam.R |only parsnip-1.5.0/parsnip/R/install_packages.R | 2 parsnip-1.5.0/parsnip/R/linear_reg_data.R | 18 parsnip-1.5.0/parsnip/R/logistic_reg_data.R | 23 parsnip-1.5.0/parsnip/R/mars.R | 22 parsnip-1.5.0/parsnip/R/mars_data.R | 20 parsnip-1.5.0/parsnip/R/misc.R | 10 parsnip-1.5.0/parsnip/R/mlp.R | 58 parsnip-1.5.0/parsnip/R/mlp_data.R | 97 + parsnip-1.5.0/parsnip/R/mlp_qrnn.R |only parsnip-1.5.0/parsnip/R/model_object_docs.R | 2 parsnip-1.5.0/parsnip/R/multinom_reg.R | 2 parsnip-1.5.0/parsnip/R/multinom_reg_data.R | 14 parsnip-1.5.0/parsnip/R/nearest_neighbor_data.R | 3 parsnip-1.5.0/parsnip/R/nullmodel_data.R | 3 parsnip-1.5.0/parsnip/R/ordinal_reg.R |only 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parsnip-1.5.0/parsnip/R/svm_poly_data.R | 5 parsnip-1.5.0/parsnip/R/svm_rbf.R | 6 parsnip-1.5.0/parsnip/R/svm_rbf_data.R | 6 parsnip-1.5.0/parsnip/R/translate.R | 12 parsnip-1.5.0/parsnip/R/tunable.R | 159 -- parsnip-1.5.0/parsnip/R/tune_args.R | 42 parsnip-1.5.0/parsnip/R/update.R | 4 parsnip-1.5.0/parsnip/build/stage23.rdb |binary parsnip-1.5.0/parsnip/inst/add-in/gadget.R | 4 parsnip-1.5.0/parsnip/inst/models.tsv | 11 parsnip-1.5.0/parsnip/man/add_on_exports.Rd | 3 parsnip-1.5.0/parsnip/man/bart-internal.Rd | 16 parsnip-1.5.0/parsnip/man/details_auto_ml_h2o.Rd | 10 parsnip-1.5.0/parsnip/man/details_bag_mlp_nnet.Rd | 7 parsnip-1.5.0/parsnip/man/details_bart_dbarts.Rd | 22 parsnip-1.5.0/parsnip/man/details_boost_tree_C5.0.Rd | 6 parsnip-1.5.0/parsnip/man/details_boost_tree_catboost.Rd |only parsnip-1.5.0/parsnip/man/details_boost_tree_h2o.Rd | 10 parsnip-1.5.0/parsnip/man/details_boost_tree_lightgbm.Rd | 45 parsnip-1.5.0/parsnip/man/details_boost_tree_mboost.Rd | 10 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parsnip-1.5.0/parsnip/man/details_logistic_reg_glm.Rd | 6 parsnip-1.5.0/parsnip/man/details_logistic_reg_glmnet.Rd | 6 parsnip-1.5.0/parsnip/man/details_logistic_reg_h2o.Rd | 10 parsnip-1.5.0/parsnip/man/details_logistic_reg_keras.Rd | 6 parsnip-1.5.0/parsnip/man/details_logistic_reg_stan.Rd | 6 parsnip-1.5.0/parsnip/man/details_mars_earth.Rd | 6 parsnip-1.5.0/parsnip/man/details_mlp_h2o.Rd | 10 parsnip-1.5.0/parsnip/man/details_mlp_keras.Rd | 6 parsnip-1.5.0/parsnip/man/details_mlp_nnet.Rd | 23 parsnip-1.5.0/parsnip/man/details_mlp_qrnn.Rd |only parsnip-1.5.0/parsnip/man/details_multinom_reg_glmnet.Rd | 6 parsnip-1.5.0/parsnip/man/details_multinom_reg_h2o.Rd | 10 parsnip-1.5.0/parsnip/man/details_multinom_reg_keras.Rd | 6 parsnip-1.5.0/parsnip/man/details_multinom_reg_nnet.Rd | 6 parsnip-1.5.0/parsnip/man/details_naive_Bayes_h2o.Rd | 10 parsnip-1.5.0/parsnip/man/details_nearest_neighbor_kknn.Rd | 6 parsnip-1.5.0/parsnip/man/details_ordinal_reg_ordinalNet.Rd |only parsnip-1.5.0/parsnip/man/details_ordinal_reg_polr.Rd |only parsnip-1.5.0/parsnip/man/details_ordinal_reg_vglm.Rd |only parsnip-1.5.0/parsnip/man/details_poisson_reg_h2o.Rd | 10 parsnip-1.5.0/parsnip/man/details_poisson_reg_stan.Rd | 6 parsnip-1.5.0/parsnip/man/details_rand_forest_grf.Rd | 6 parsnip-1.5.0/parsnip/man/details_rand_forest_h2o.Rd | 10 parsnip-1.5.0/parsnip/man/details_rand_forest_ordinalForest.Rd |only parsnip-1.5.0/parsnip/man/details_rand_forest_partykit.Rd | 18 parsnip-1.5.0/parsnip/man/details_rand_forest_randomForest.Rd | 24 parsnip-1.5.0/parsnip/man/details_rand_forest_ranger.Rd | 14 parsnip-1.5.0/parsnip/man/details_rule_fit_h2o.Rd | 10 parsnip-1.5.0/parsnip/man/details_rule_fit_xrf.Rd | 15 parsnip-1.5.0/parsnip/man/details_svm_linear_LiblineaR.Rd | 6 parsnip-1.5.0/parsnip/man/details_svm_linear_kernlab.Rd | 21 parsnip-1.5.0/parsnip/man/details_svm_poly_kernlab.Rd | 6 parsnip-1.5.0/parsnip/man/details_svm_rbf_kernlab.Rd | 6 parsnip-1.5.0/parsnip/man/format-internals.Rd | 39 parsnip-1.5.0/parsnip/man/mcqrnn_train.Rd |only parsnip-1.5.0/parsnip/man/model_arg_exists.Rd |only parsnip-1.5.0/parsnip/man/model_fit.Rd | 2 parsnip-1.5.0/parsnip/man/multi_predict.Rd | 16 parsnip-1.5.0/parsnip/man/ordinal_reg.Rd |only parsnip-1.5.0/parsnip/man/other_predict.Rd | 18 parsnip-1.5.0/parsnip/man/parsnip_update.Rd | 22 parsnip-1.5.0/parsnip/man/predict.model_fit.Rd | 36 parsnip-1.5.0/parsnip/man/rand_forest.Rd | 15 parsnip-1.5.0/parsnip/man/rmd/auto_ml_h2o.Rmd | 7 parsnip-1.5.0/parsnip/man/rmd/auto_ml_h2o.md | 8 parsnip-1.5.0/parsnip/man/rmd/bag_mlp_nnet.Rmd | 2 parsnip-1.5.0/parsnip/man/rmd/bag_mlp_nnet.md | 4 parsnip-1.5.0/parsnip/man/rmd/bart_dbarts.Rmd | 6 parsnip-1.5.0/parsnip/man/rmd/bart_dbarts.md | 19 parsnip-1.5.0/parsnip/man/rmd/boost_tree_C5.0.Rmd | 2 parsnip-1.5.0/parsnip/man/rmd/boost_tree_C5.0.md | 2 parsnip-1.5.0/parsnip/man/rmd/boost_tree_catboost.Rmd |only parsnip-1.5.0/parsnip/man/rmd/boost_tree_catboost.md |only parsnip-1.5.0/parsnip/man/rmd/boost_tree_h2o.Rmd | 6 parsnip-1.5.0/parsnip/man/rmd/boost_tree_h2o.md | 7 parsnip-1.5.0/parsnip/man/rmd/boost_tree_lightgbm.Rmd | 28 parsnip-1.5.0/parsnip/man/rmd/boost_tree_lightgbm.md | 28 parsnip-1.5.0/parsnip/man/rmd/boost_tree_mboost.Rmd | 6 parsnip-1.5.0/parsnip/man/rmd/boost_tree_mboost.md | 7 parsnip-1.5.0/parsnip/man/rmd/boost_tree_xgboost.Rmd | 18 parsnip-1.5.0/parsnip/man/rmd/boost_tree_xgboost.md | 64 - parsnip-1.5.0/parsnip/man/rmd/cubist_rules_Cubist.Rmd | 8 parsnip-1.5.0/parsnip/man/rmd/cubist_rules_Cubist.md | 9 parsnip-1.5.0/parsnip/man/rmd/decision_tree_C5.0.Rmd | 2 parsnip-1.5.0/parsnip/man/rmd/decision_tree_C5.0.md | 2 parsnip-1.5.0/parsnip/man/rmd/decision_tree_partykit.Rmd | 8 parsnip-1.5.0/parsnip/man/rmd/decision_tree_partykit.md | 9 parsnip-1.5.0/parsnip/man/rmd/decision_tree_rpart.Rmd | 2 parsnip-1.5.0/parsnip/man/rmd/decision_tree_rpart.md | 2 parsnip-1.5.0/parsnip/man/rmd/decision_tree_rpartScore.Rmd |only parsnip-1.5.0/parsnip/man/rmd/decision_tree_rpartScore.md |only parsnip-1.5.0/parsnip/man/rmd/gen_additive_mod_mgcv.Rmd | 1 parsnip-1.5.0/parsnip/man/rmd/gen_additive_mod_mgcv.md | 1 parsnip-1.5.0/parsnip/man/rmd/gen_additive_mod_vgam.Rmd |only parsnip-1.5.0/parsnip/man/rmd/gen_additive_mod_vgam.md |only parsnip-1.5.0/parsnip/man/rmd/linear_reg_glm.Rmd | 2 parsnip-1.5.0/parsnip/man/rmd/linear_reg_glm.md | 2 parsnip-1.5.0/parsnip/man/rmd/linear_reg_glmnet.Rmd | 2 parsnip-1.5.0/parsnip/man/rmd/linear_reg_glmnet.md | 2 parsnip-1.5.0/parsnip/man/rmd/linear_reg_h2o.Rmd | 6 parsnip-1.5.0/parsnip/man/rmd/linear_reg_h2o.md | 7 parsnip-1.5.0/parsnip/man/rmd/linear_reg_keras.Rmd | 2 parsnip-1.5.0/parsnip/man/rmd/linear_reg_keras.md | 2 parsnip-1.5.0/parsnip/man/rmd/linear_reg_lm.Rmd | 2 parsnip-1.5.0/parsnip/man/rmd/linear_reg_lm.md | 2 parsnip-1.5.0/parsnip/man/rmd/linear_reg_quantreg.Rmd | 2 parsnip-1.5.0/parsnip/man/rmd/linear_reg_quantreg.md | 2 parsnip-1.5.0/parsnip/man/rmd/linear_reg_stan.Rmd | 2 parsnip-1.5.0/parsnip/man/rmd/linear_reg_stan.md | 2 parsnip-1.5.0/parsnip/man/rmd/logistic_reg_LiblineaR.Rmd | 8 parsnip-1.5.0/parsnip/man/rmd/logistic_reg_LiblineaR.md | 7 parsnip-1.5.0/parsnip/man/rmd/logistic_reg_glm.Rmd | 2 parsnip-1.5.0/parsnip/man/rmd/logistic_reg_glm.md | 2 parsnip-1.5.0/parsnip/man/rmd/logistic_reg_glmnet.Rmd | 2 parsnip-1.5.0/parsnip/man/rmd/logistic_reg_glmnet.md | 2 parsnip-1.5.0/parsnip/man/rmd/logistic_reg_h2o.Rmd | 6 parsnip-1.5.0/parsnip/man/rmd/logistic_reg_h2o.md | 7 parsnip-1.5.0/parsnip/man/rmd/logistic_reg_keras.Rmd | 2 parsnip-1.5.0/parsnip/man/rmd/logistic_reg_keras.md | 2 parsnip-1.5.0/parsnip/man/rmd/logistic_reg_stan.Rmd | 2 parsnip-1.5.0/parsnip/man/rmd/logistic_reg_stan.md | 2 parsnip-1.5.0/parsnip/man/rmd/mars_earth.Rmd | 2 parsnip-1.5.0/parsnip/man/rmd/mars_earth.md | 2 parsnip-1.5.0/parsnip/man/rmd/mlp_h2o.Rmd | 6 parsnip-1.5.0/parsnip/man/rmd/mlp_h2o.md | 7 parsnip-1.5.0/parsnip/man/rmd/mlp_keras.Rmd | 2 parsnip-1.5.0/parsnip/man/rmd/mlp_keras.md | 2 parsnip-1.5.0/parsnip/man/rmd/mlp_nnet.Rmd | 5 parsnip-1.5.0/parsnip/man/rmd/mlp_nnet.md | 17 parsnip-1.5.0/parsnip/man/rmd/mlp_qrnn.Rmd |only parsnip-1.5.0/parsnip/man/rmd/mlp_qrnn.md |only parsnip-1.5.0/parsnip/man/rmd/multinom_reg_glmnet.Rmd | 2 parsnip-1.5.0/parsnip/man/rmd/multinom_reg_glmnet.md | 2 parsnip-1.5.0/parsnip/man/rmd/multinom_reg_h2o.Rmd | 6 parsnip-1.5.0/parsnip/man/rmd/multinom_reg_h2o.md | 7 parsnip-1.5.0/parsnip/man/rmd/multinom_reg_keras.Rmd | 2 parsnip-1.5.0/parsnip/man/rmd/multinom_reg_keras.md | 2 parsnip-1.5.0/parsnip/man/rmd/multinom_reg_nnet.Rmd | 2 parsnip-1.5.0/parsnip/man/rmd/multinom_reg_nnet.md | 2 parsnip-1.5.0/parsnip/man/rmd/naive_Bayes_h2o.Rmd | 6 parsnip-1.5.0/parsnip/man/rmd/naive_Bayes_h2o.md | 7 parsnip-1.5.0/parsnip/man/rmd/nearest_neighbor_kknn.Rmd | 2 parsnip-1.5.0/parsnip/man/rmd/nearest_neighbor_kknn.md | 2 parsnip-1.5.0/parsnip/man/rmd/ordinal_reg_ordinalNet.Rmd |only parsnip-1.5.0/parsnip/man/rmd/ordinal_reg_ordinalNet.md |only parsnip-1.5.0/parsnip/man/rmd/ordinal_reg_polr.Rmd |only parsnip-1.5.0/parsnip/man/rmd/ordinal_reg_polr.md |only parsnip-1.5.0/parsnip/man/rmd/ordinal_reg_vglm.Rmd |only parsnip-1.5.0/parsnip/man/rmd/ordinal_reg_vglm.md |only parsnip-1.5.0/parsnip/man/rmd/poisson_reg_h2o.Rmd | 6 parsnip-1.5.0/parsnip/man/rmd/poisson_reg_h2o.md | 7 parsnip-1.5.0/parsnip/man/rmd/poisson_reg_stan.Rmd | 2 parsnip-1.5.0/parsnip/man/rmd/poisson_reg_stan.md | 2 parsnip-1.5.0/parsnip/man/rmd/rand_forest_grf.Rmd | 2 parsnip-1.5.0/parsnip/man/rmd/rand_forest_grf.md | 2 parsnip-1.5.0/parsnip/man/rmd/rand_forest_h2o.Rmd | 6 parsnip-1.5.0/parsnip/man/rmd/rand_forest_h2o.md | 7 parsnip-1.5.0/parsnip/man/rmd/rand_forest_ordinalForest.Rmd |only parsnip-1.5.0/parsnip/man/rmd/rand_forest_ordinalForest.md |only parsnip-1.5.0/parsnip/man/rmd/rand_forest_partykit.Rmd | 10 parsnip-1.5.0/parsnip/man/rmd/rand_forest_partykit.md | 11 parsnip-1.5.0/parsnip/man/rmd/rand_forest_randomForest.Rmd | 14 parsnip-1.5.0/parsnip/man/rmd/rand_forest_randomForest.md | 15 parsnip-1.5.0/parsnip/man/rmd/rand_forest_ranger.Rmd | 6 parsnip-1.5.0/parsnip/man/rmd/rand_forest_ranger.md | 6 parsnip-1.5.0/parsnip/man/rmd/rule_fit_h2o.Rmd | 8 parsnip-1.5.0/parsnip/man/rmd/rule_fit_h2o.md | 9 parsnip-1.5.0/parsnip/man/rmd/rule_fit_xrf.Rmd | 8 parsnip-1.5.0/parsnip/man/rmd/rule_fit_xrf.md | 8 parsnip-1.5.0/parsnip/man/rmd/svm_linear_LiblineaR.Rmd | 2 parsnip-1.5.0/parsnip/man/rmd/svm_linear_LiblineaR.md | 2 parsnip-1.5.0/parsnip/man/rmd/svm_linear_kernlab.Rmd | 22 parsnip-1.5.0/parsnip/man/rmd/svm_linear_kernlab.md | 16 parsnip-1.5.0/parsnip/man/rmd/svm_poly_kernlab.Rmd | 2 parsnip-1.5.0/parsnip/man/rmd/svm_poly_kernlab.md | 2 parsnip-1.5.0/parsnip/man/rmd/svm_rbf_kernlab.Rmd | 2 parsnip-1.5.0/parsnip/man/rmd/svm_rbf_kernlab.md | 2 parsnip-1.5.0/parsnip/tests/testthat/_snaps/args_and_modes.md | 18 parsnip-1.5.0/parsnip/tests/testthat/_snaps/bart-tunable.md |only parsnip-1.5.0/parsnip/tests/testthat/_snaps/boost_tree-tunable.md |only parsnip-1.5.0/parsnip/tests/testthat/_snaps/boost_tree_xgboost.md | 97 + parsnip-1.5.0/parsnip/tests/testthat/_snaps/convert_data.md | 4 parsnip-1.5.0/parsnip/tests/testthat/_snaps/decision_tree-tunable.md |only parsnip-1.5.0/parsnip/tests/testthat/_snaps/format_predictions.md |only parsnip-1.5.0/parsnip/tests/testthat/_snaps/gen_additive_mod-tunable.md |only parsnip-1.5.0/parsnip/tests/testthat/_snaps/linear_reg-tunable.md |only parsnip-1.5.0/parsnip/tests/testthat/_snaps/linear_reg.md | 2 parsnip-1.5.0/parsnip/tests/testthat/_snaps/logistic_reg-tunable.md |only parsnip-1.5.0/parsnip/tests/testthat/_snaps/mars-tunable.md |only parsnip-1.5.0/parsnip/tests/testthat/_snaps/mars.md | 2 parsnip-1.5.0/parsnip/tests/testthat/_snaps/mlp-tunable.md |only parsnip-1.5.0/parsnip/tests/testthat/_snaps/mlp.md | 2 parsnip-1.5.0/parsnip/tests/testthat/_snaps/model_basics.md | 14 parsnip-1.5.0/parsnip/tests/testthat/_snaps/multinom_reg-tunable.md |only parsnip-1.5.0/parsnip/tests/testthat/_snaps/multinom_reg.md | 2 parsnip-1.5.0/parsnip/tests/testthat/_snaps/nearest_neighbor-tunable.md |only parsnip-1.5.0/parsnip/tests/testthat/_snaps/null_model-tunable.md |only parsnip-1.5.0/parsnip/tests/testthat/_snaps/nullmodel.md | 2 parsnip-1.5.0/parsnip/tests/testthat/_snaps/print.md | 4 parsnip-1.5.0/parsnip/tests/testthat/_snaps/rand_forest-tunable.md |only parsnip-1.5.0/parsnip/tests/testthat/_snaps/rand_forest.md | 2 parsnip-1.5.0/parsnip/tests/testthat/_snaps/rand_forest_ranger.md | 4 parsnip-1.5.0/parsnip/tests/testthat/_snaps/re_registration.md | 6 parsnip-1.5.0/parsnip/tests/testthat/_snaps/registration.md | 82 - parsnip-1.5.0/parsnip/tests/testthat/_snaps/repair_call.md |only parsnip-1.5.0/parsnip/tests/testthat/_snaps/standalone-survival.md | 8 parsnip-1.5.0/parsnip/tests/testthat/_snaps/surv_reg-tunable.md |only parsnip-1.5.0/parsnip/tests/testthat/_snaps/svm_linear-tunable.md |only parsnip-1.5.0/parsnip/tests/testthat/_snaps/svm_poly-tunable.md |only parsnip-1.5.0/parsnip/tests/testthat/_snaps/svm_rbf-tunable.md |only parsnip-1.5.0/parsnip/tests/testthat/_snaps/translate.md | 190 +-- parsnip-1.5.0/parsnip/tests/testthat/_snaps/tune_args.md |only parsnip-1.5.0/parsnip/tests/testthat/helper-extract_parameter_set.R | 14 parsnip-1.5.0/parsnip/tests/testthat/helper-tunable.R |only parsnip-1.5.0/parsnip/tests/testthat/test-args_and_modes.R | 10 parsnip-1.5.0/parsnip/tests/testthat/test-bart-tunable.R |only parsnip-1.5.0/parsnip/tests/testthat/test-boost_tree-tunable.R |only parsnip-1.5.0/parsnip/tests/testthat/test-boost_tree.R | 2 parsnip-1.5.0/parsnip/tests/testthat/test-boost_tree_xgboost.R | 91 + parsnip-1.5.0/parsnip/tests/testthat/test-convert_data.R | 18 parsnip-1.5.0/parsnip/tests/testthat/test-decision_tree-tunable.R |only parsnip-1.5.0/parsnip/tests/testthat/test-decision_tree.R | 2 parsnip-1.5.0/parsnip/tests/testthat/test-default_engines.R | 1 parsnip-1.5.0/parsnip/tests/testthat/test-descriptors.R | 32 parsnip-1.5.0/parsnip/tests/testthat/test-fit_interfaces.R | 4 parsnip-1.5.0/parsnip/tests/testthat/test-format_predictions.R |only parsnip-1.5.0/parsnip/tests/testthat/test-gen_additive_mod-tunable.R |only parsnip-1.5.0/parsnip/tests/testthat/test-gen_additive_model.R | 4 parsnip-1.5.0/parsnip/tests/testthat/test-linear_reg-tunable.R |only parsnip-1.5.0/parsnip/tests/testthat/test-linear_reg_keras.R | 2 parsnip-1.5.0/parsnip/tests/testthat/test-linear_reg_quantreg.R | 18 parsnip-1.5.0/parsnip/tests/testthat/test-logistic_reg-tunable.R |only parsnip-1.5.0/parsnip/tests/testthat/test-logistic_reg_keras.R | 2 parsnip-1.5.0/parsnip/tests/testthat/test-mars-tunable.R |only parsnip-1.5.0/parsnip/tests/testthat/test-mars.R | 40 parsnip-1.5.0/parsnip/tests/testthat/test-mlp-tunable.R |only parsnip-1.5.0/parsnip/tests/testthat/test-mlp.R | 4 parsnip-1.5.0/parsnip/tests/testthat/test-mlp_keras.R | 4 parsnip-1.5.0/parsnip/tests/testthat/test-model_basics.R | 38 parsnip-1.5.0/parsnip/tests/testthat/test-multinom_reg-tunable.R |only parsnip-1.5.0/parsnip/tests/testthat/test-multinom_reg_keras.R | 2 parsnip-1.5.0/parsnip/tests/testthat/test-multinom_reg_nnet.R | 2 parsnip-1.5.0/parsnip/tests/testthat/test-nearest_neighbor-tunable.R |only parsnip-1.5.0/parsnip/tests/testthat/test-null_model-tunable.R |only parsnip-1.5.0/parsnip/tests/testthat/test-nullmodel.R | 4 parsnip-1.5.0/parsnip/tests/testthat/test-ordinal_reg.R |only parsnip-1.5.0/parsnip/tests/testthat/test-packages.R | 2 parsnip-1.5.0/parsnip/tests/testthat/test-partykit.R | 4 parsnip-1.5.0/parsnip/tests/testthat/test-predict_formats.R | 12 parsnip-1.5.0/parsnip/tests/testthat/test-print.R | 2 parsnip-1.5.0/parsnip/tests/testthat/test-rand_forest-tunable.R |only parsnip-1.5.0/parsnip/tests/testthat/test-rand_forest_ranger.R | 2 parsnip-1.5.0/parsnip/tests/testthat/test-re_registration.R | 8 parsnip-1.5.0/parsnip/tests/testthat/test-registration.R | 56 parsnip-1.5.0/parsnip/tests/testthat/test-repair_call.R |only parsnip-1.5.0/parsnip/tests/testthat/test-standalone-survival.R | 14 parsnip-1.5.0/parsnip/tests/testthat/test-surv_reg-tunable.R |only parsnip-1.5.0/parsnip/tests/testthat/test-survival-censoring-weights.R | 8 parsnip-1.5.0/parsnip/tests/testthat/test-svm_linear-tunable.R |only parsnip-1.5.0/parsnip/tests/testthat/test-svm_linear.R | 8 parsnip-1.5.0/parsnip/tests/testthat/test-svm_poly-tunable.R |only parsnip-1.5.0/parsnip/tests/testthat/test-svm_poly.R | 4 parsnip-1.5.0/parsnip/tests/testthat/test-svm_rbf-tunable.R |only parsnip-1.5.0/parsnip/tests/testthat/test-svm_rbf.R | 10 parsnip-1.5.0/parsnip/tests/testthat/test-translate.R | 33 parsnip-1.5.0/parsnip/tests/testthat/test-tune_args.R |only parsnip-1.5.0/parsnip/tests/testthat/test-varying.R | 8 347 files changed, 2934 insertions(+), 1253 deletions(-)
Title: Estimated Marginal Means, aka Least-Squares Means
Description: Obtain estimated marginal means (EMMs) for many linear, generalized
linear, and mixed models. Compute contrasts or linear functions of EMMs,
trends, and comparisons of slopes. Plots and other displays.
Least-squares means are discussed, and the term "estimated marginal means"
is suggested, in Searle, Speed, and Milliken (1980) Population marginal means
in the linear model: An alternative to least squares means, The American
Statistician 34(4), 216-221 <doi:10.1080/00031305.1980.10483031>.
Author: Russell V. Lenth [aut, cph],
Julia Piaskowski [cre, aut],
Balazs Banfai [ctb],
Ben Bolker [ctb],
Paul Buerkner [ctb],
Iago Gine-Vazquez [ctb],
Maxime Herve [ctb],
Maarten Jung [ctb],
Jonathon Love [ctb],
Fernando Miguez [ctb],
Hannes Riebl [ctb],
Hen [...truncated...]
Maintainer: Julia Piaskowski <julia.piask@gmail.com>
Diff between emmeans versions 2.0.2 dated 2026-03-05 and 2.0.3 dated 2026-04-09
DESCRIPTION | 18 ++++----- MD5 | 72 ++++++++++++++++++------------------- NEWS.md | 9 ++++ R/contrast.R | 4 +- R/multinom-support.R | 2 - R/multiv.R | 67 +++++++++++++++++++++++----------- R/summary.R | 34 ++++++++++++----- build/vignette.rds |binary inst/doc/AQuickStart.Rmd | 2 - inst/doc/AQuickStart.html | 7 +-- inst/doc/FAQs.html | 10 ++--- inst/doc/basics.html | 6 +-- inst/doc/comparisons.html | 12 +++--- inst/doc/confidence-intervals.html | 16 ++++---- inst/doc/interactions.html | 18 ++++----- inst/doc/messy-data.html | 11 +++-- inst/doc/models.html | 4 +- inst/doc/predictions.Rmd | 2 - inst/doc/predictions.html | 11 ++--- inst/doc/re-engineering-clds.html | 6 +-- inst/doc/re-engineering-clds.rmd | 2 - inst/doc/sophisticated.html | 4 +- inst/doc/transformations.html | 6 +-- inst/doc/utilities.html | 4 +- inst/doc/vignette-topics.Rmd | 16 ++++---- inst/doc/vignette-topics.html | 32 ++++++++-------- inst/doc/xplanations.html | 4 +- inst/doc/xtending.Rmd | 2 - inst/doc/xtending.html | 11 ++--- inst/extexamples/mvregrid.R | 30 +++++++++++---- man/mvregrid.Rd | 24 ++++++++---- man/summary.emmGrid.Rd | 3 + vignettes/AQuickStart.Rmd | 2 - vignettes/predictions.Rmd | 2 - vignettes/re-engineering-clds.rmd | 2 - vignettes/vignette-topics.Rmd | 16 ++++---- vignettes/xtending.Rmd | 2 - 37 files changed, 274 insertions(+), 199 deletions(-)
Title: Helpers for Developing Command Line Interfaces
Description: A suite of tools to build attractive command line interfaces
('CLIs'), from semantic elements: headings, lists, alerts, paragraphs,
etc. Supports custom themes via a 'CSS'-like language. It also
contains a number of lower level 'CLI' elements: rules, boxes, trees,
and 'Unicode' symbols with 'ASCII' alternatives. It support ANSI
colors and text styles as well.
Author: Gabor Csardi [aut, cre],
Hadley Wickham [ctb],
Kirill Mueller [ctb],
Salim Brueggemann [ctb] ,
Posit Software, PBC [cph, fnd]
Maintainer: Gabor Csardi <gabor@posit.co>
Diff between cli versions 3.6.5 dated 2025-04-23 and 3.6.6 dated 2026-04-09
DESCRIPTION | 16 - LICENSE | 2 MD5 | 410 +++++++++++++------------- NEWS.md | 11 R/aaa-utils.R | 6 R/aab-rstudio-detect.R | 63 +-- R/ansi-hyperlink.R | 99 ++++-- R/ansi-palette.R | 12 R/ansi-utils.R | 7 R/ansi.R | 103 +++--- R/ansiex.R | 180 +++++++---- R/app.R | 16 - R/assertions.R | 8 R/box-styles.R | 14 R/boxes.R | 41 +- R/bullets.R | 9 R/cat.R | 11 R/cli-errors.R | 18 - R/cli.R | 251 +++++++++++---- R/cliapp-docs.R | 5 R/cliapp.R | 139 +++++--- R/containers.R | 44 +- R/debug.R | 20 - R/defer.R | 345 +++++++++++---------- R/diff.R | 23 - R/docs.R | 1 R/enc-utils.R | 1 R/errors.R | 316 ++++++++++++-------- R/format-conditions.R | 55 ++- R/format.R | 1 R/friendly-type.R | 314 +++++++++---------- R/glue.R | 50 +-- R/hash.R | 9 R/inline.R | 50 ++- R/internals.R | 40 +- R/keypress.R | 4 R/lorem.R | 8 R/num-ansi-colors.R | 45 +- R/numbers.R |only R/onload.R | 58 +-- R/pluralize.R | 20 - R/prettycode.R | 99 ++++-- R/print.R | 2 R/progress-along.R | 82 +++-- R/progress-bar.R | 15 R/progress-c.R | 6 R/progress-client.R | 114 ++++--- R/progress-server.R | 29 + R/progress-ticking.R | 1 R/progress-utils.R | 1 R/progress-variables.R | 57 +-- R/rematch2.R | 15 R/rlang.R | 13 R/ruler.R | 1 R/rules.R | 58 ++- R/server.R | 1 R/simple-theme.R | 48 +-- R/sitrep.R | 9 R/sizes.R | 23 - R/spark.R | 2 R/spinner.R | 47 +- R/status-bar.R | 115 ++++--- R/symbol.R | 7 R/test.R | 96 +++--- R/themes.R | 111 ++++--- R/time-ago.R | 42 +- R/time.R | 10 R/timer.R | 1 R/tree.R | 77 +++- R/tty.R | 32 -- R/unicode.R | 1 R/utf8.R | 22 - R/utils.R | 3 R/vt.R | 11 R/width.R | 11 R/zzz.R | 81 ++--- README.md | 2 exec/news.R | 66 ++-- exec/outdated.R | 25 + exec/search.R | 22 - exec/up.R | 43 +- inst/examples/apps/news.R | 66 ++-- inst/examples/apps/outdated.R | 25 + inst/examples/apps/search.R | 22 - inst/examples/apps/up.R | 42 +- inst/shiny/along/app.R | 4 inst/shiny/format/app.R | 4 inst/shiny/nested/app.R | 4 inst/shiny/simple/app.R | 4 man/ansi_nzchar.Rd | 2 man/builtin_theme.Rd | 8 man/cli-package.Rd | 2 man/cli_progress_bar.Rd | 3 man/code_theme_list.Rd | 4 man/hash_xxhash.Rd | 2 man/links.Rd | 2 man/roxygen/meta.R | 1 man/simple_theme.Rd | 8 man/utf8_nchar.Rd | 2 man/vt_output.Rd | 4 src/cleancall.c | 6 src/init.c | 6 src/progress.c | 24 + src/vt.c | 4 tests/testthat/_snaps/ansi-hyperlink.md | 8 tests/testthat/_snaps/ansi-make.md | 6 tests/testthat/_snaps/ansi-palette.md | 2 tests/testthat/_snaps/ansiex.md | 12 tests/testthat/_snaps/app.md | 2 tests/testthat/_snaps/assertions.md |only tests/testthat/_snaps/defer.md | 4 tests/testthat/_snaps/diff.md | 27 + tests/testthat/_snaps/headers.md |only tests/testthat/_snaps/inline-2.md | 26 + tests/testthat/_snaps/keypress.md | 2 tests/testthat/_snaps/lists.md | 2 tests/testthat/_snaps/new-r/inline-2.md | 4 tests/testthat/_snaps/new/headers.md | 2 tests/testthat/_snaps/pluralization.md | 23 + tests/testthat/_snaps/progress-along.md | 10 tests/testthat/_snaps/progress-c.md | 32 ++ tests/testthat/_snaps/progress-client.md | 40 ++ tests/testthat/_snaps/progress-message.md | 30 + tests/testthat/_snaps/rules.md | 13 tests/testthat/_snaps/substitution.md |only tests/testthat/_snaps/tree.md | 76 ++++ tests/testthat/_snaps/utils.md | 9 tests/testthat/helper.R | 91 +++-- tests/testthat/progresstest/R/test.R | 1 tests/testthat/progresstest/src/cleancall.c | 6 tests/testthat/progresstest/src/test.c | 6 tests/testthat/progresstestcpp/R/testcpp.R | 1 tests/testthat/setup.R | 1 tests/testthat/test-alerts.R | 1 tests/testthat/test-ansi-combine.R | 1 tests/testthat/test-ansi-html.R | 1 tests/testthat/test-ansi-hyperlink.R | 63 +++ tests/testthat/test-ansi-make.R | 32 +- tests/testthat/test-ansi-palette.R | 1 tests/testthat/test-ansi-utils.R | 1 tests/testthat/test-ansi.R | 33 +- tests/testthat/test-ansiex-2.R | 47 +- tests/testthat/test-ansiex.R | 97 +++--- tests/testthat/test-app.R | 1 tests/testthat/test-assertions.R | 79 ++--- tests/testthat/test-box-styles.R | 1 tests/testthat/test-boxes.R | 11 tests/testthat/test-bullets.R | 5 tests/testthat/test-cat-helpers.R | 1 tests/testthat/test-cat.R | 1 tests/testthat/test-cliapp-output.R | 1 tests/testthat/test-code.R | 1 tests/testthat/test-collapsing.R | 42 +- tests/testthat/test-console-width.R | 1 tests/testthat/test-containers.R | 6 tests/testthat/test-css.R | 30 - tests/testthat/test-custom-handler.R | 7 tests/testthat/test-deep-lists.R | 21 - tests/testthat/test-defer.R | 2 tests/testthat/test-diff.R | 32 -- tests/testthat/test-format-conditions.R | 88 +++-- tests/testthat/test-glue.R | 1 tests/testthat/test-hash.R | 1 tests/testthat/test-headers.R | 31 + tests/testthat/test-inline-2.R | 33 +- tests/testthat/test-inline.R | 28 + tests/testthat/test-keypress.R | 65 +++- tests/testthat/test-links.R | 322 +++++++++++--------- tests/testthat/test-lists.R | 1 tests/testthat/test-meta.R | 1 tests/testthat/test-non-breaking-space.R | 1 tests/testthat/test-num-ansi-colors.R | 11 tests/testthat/test-package.R | 6 tests/testthat/test-pluralization.R | 26 - tests/testthat/test-prettycode.R | 63 ++- tests/testthat/test-progress-along.R | 7 tests/testthat/test-progress-bar.R | 1 tests/testthat/test-progress-c.R | 29 - tests/testthat/test-progress-client.R | 47 ++ tests/testthat/test-progress-handler-logger.R | 1 tests/testthat/test-progress-handler-say.R | 1 tests/testthat/test-progress-handlers.R | 1 tests/testthat/test-progress-message.R | 13 tests/testthat/test-progress-ticking.R | 12 tests/testthat/test-progress-types.R | 19 - tests/testthat/test-progress-utils.R | 1 tests/testthat/test-progress-variables.R | 18 - tests/testthat/test-rlang-errors.R | 123 ++----- tests/testthat/test-rules.R | 20 - tests/testthat/test-sitrep.R | 1 tests/testthat/test-spark.R | 1 tests/testthat/test-spinners.R | 1 tests/testthat/test-status-bar.R | 156 ++++++--- tests/testthat/test-subprocess.R | 32 +- tests/testthat/test-substitution.R | 8 tests/testthat/test-suppress.R | 1 tests/testthat/test-text.R | 1 tests/testthat/test-themes.R | 18 - tests/testthat/test-timer.R | 1 tests/testthat/test-tree.R | 126 ++++++- tests/testthat/test-type.R | 1 tests/testthat/test-utf8.R | 1 tests/testthat/test-utils.R | 15 tests/testthat/test-verbatim.R | 1 tests/testthat/test-vt.R | 47 ++ tools/get-rstudio-themes.R | 90 +++-- tools/parse-iterm.R | 33 +- tools/spinners.R | 30 + 208 files changed, 4174 insertions(+), 2791 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-09-16 1.3.17
2024-08-30 1.3.15
2024-02-07 1.3.9
Title: Parse Tabled Content to Text Vector and Extract Statistical
Standard Results
Description: Features include the ability to extract tabled content from NISO-JATS-coded XML, any native HTML or HML file, DOCX, and PDF documents, and then collapse it into a text format that is readable by humans by mimicking the actions of a screen reader. As tables within PDF documents are extracted with the 'tabulapdf' package, and the table captions and footnotes cannot be extracted, the results on tables within PDF documents have to be considered less precise. The function table2matrix() returns a list of the tables within a document as character matrices. table2text() collapses the matrix content into a list of character strings by imitating the behavior of a screen reader. The textual representation of characters and numbers can be unified with unifyMatrix() before parsing. The function table2stats() extracts the tabled statistical test results from the collapsed text with the function standardStats() from the 'JATSdecoder' package and, if activated, checks the reported and coded p-values [...truncated...]
Author: Ingmar Boeschen [aut, cre]
Maintainer: Ingmar Boeschen <ingmar.boeschen@uni-hamburg.de>
Diff between tableParser versions 1.0.4 dated 2026-03-30 and 1.0.5 dated 2026-04-09
DESCRIPTION | 8 +++---- MD5 | 6 ++--- R/parseMatrixContent.R | 7 ++++++ R/tableFunctions.R | 51 ++++++++++++++++++++++++++++++++++++++++++++++++- 4 files changed, 64 insertions(+), 8 deletions(-)
More information about shinydataviewer at CRAN
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