Title: Update and Manipulate Rd Documentation Objects
Description: Functions for manipulation of R documentation objects,
including functions reprompt() and ereprompt() for updating 'Rd'
documentation for functions, methods and classes; 'Rd' macros for
citations and import of references from 'bibtex' files for use in
'Rd' files and 'roxygen2' comments; 'Rd' macros for evaluating and
inserting snippets of 'R' code and the results of its evaluation or
creating graphics on the fly; and many functions for manipulation of
references and Rd files.
Author: Georgi N. Boshnakov [aut, cre]
,
Duncan Murdoch [ctb]
Maintainer: Georgi N. Boshnakov <georgi.boshnakov@manchester.ac.uk>
Diff between Rdpack versions 2.6.3 dated 2025-03-16 and 2.6.4 dated 2025-04-08
DESCRIPTION | 6 MD5 | 20 NEWS.md | 7 build/partial.rdb |binary inst/doc/Inserting_bibtex_references.pdf |binary inst/doc/Inserting_figures_and_evaluated_examples.pdf |binary tests/testthat/StructureClasses.Rd | 362 +++++++++--------- tests/testthat/as.character.f_usage.Rd | 124 +++--- tests/testthat/myshow-methods.Rd | 40 - tests/testthat/show.Rd | 162 ++++---- tests/testthat/test-reprompt.R | 37 + 11 files changed, 386 insertions(+), 372 deletions(-)
Title: Bindings to 'Tree-Sitter'
Description: Provides bindings to 'Tree-sitter', an incremental parsing
system for programming tools. 'Tree-sitter' builds concrete syntax
trees for source files of any language, and can efficiently update
those syntax trees as the source file is edited. It also includes a
robust error recovery system that provides useful parse results even
in the presence of syntax errors.
Author: Davis Vaughan [aut, cre],
Posit Software, PBC [cph, fnd],
Tree-sitter authors [cph]
Maintainer: Davis Vaughan <davis@posit.co>
Diff between treesitter versions 0.1.0 dated 2024-06-24 and 0.2.0 dated 2025-04-08
DESCRIPTION | 11 MD5 | 60 ++-- NAMESPACE | 1 NEWS.md | 14 + R/query.R | 344 +++++++++++++++++++++++- README.md | 6 man/query-accessors.Rd | 17 - man/query-matches-and-captures.Rd | 269 +++++++++++++++++++ man/query.Rd | 47 ++- src/decl/query-decl.h | 2 src/decl/query-matches-decl.h | 17 + src/init.c | 4 src/node.c | 6 src/query-matches.c | 163 +++++++++-- src/query.c | 12 src/rlang/env.h | 4 src/rlang/fn.h | 5 src/rlang/rlang.c | 2 src/tree-sitter/lib/include/tree_sitter/api.h | 19 + src/tree-sitter/lib/src/clock.h | 2 src/tree-sitter/lib/src/lexer.c | 13 src/tree-sitter/lib/src/parser.c | 14 - src/tree-sitter/lib/src/parser.h | 1 src/tree-sitter/lib/src/query.c | 33 +- src/tree-sitter/lib/src/wasm_store.c | 21 - src/utils.c | 33 +- src/utils.h | 7 tests/testthat/_snaps/print.md | 51 ++- tests/testthat/_snaps/query.md | 8 tests/testthat/test-print.R | 13 tests/testthat/test-query.R | 364 +++++++++++++++++++++++++- 31 files changed, 1384 insertions(+), 179 deletions(-)
Title: Sample Size Calculation for RNA-Seq Experimental Design
Description: We propose a procedure for sample size calculation while
controlling false discovery rate for RNA-seq experimental design. Our
procedure depends on the Voom method proposed for RNA-seq data analysis
by Law et al. (2014) <DOI:10.1186/gb-2014-15-2-r29> and the sample size
calculation method proposed for microarray experiments by Liu and Hwang
(2007) <DOI:10.1093/bioinformatics/btl664>. We develop a set of functions
that calculates appropriate sample sizes for two-sample t-test for RNA-seq
experiments with fixed or varied set of parameters. The outputs also contain a
plot of power versus sample size, a table of power at different sample sizes,
and a table of critical test values at different sample sizes.
To install this package, please use
'source("http://bioconductor.org/biocLite.R"); biocLite("ssizeRNA")'.
For R version 3.5 or greater, please use
'if(!requireNamespace("BiocManager", quietly = TRUE)){install.packages("BiocManager")}; BiocManager::install("ssizeRNA")'.
Author: Ran Bi [aut, cre],
Peng Liu [aut],
Tim Triche [ctb]
Maintainer: Ran Bi <biranpier@gmail.com>
Diff between ssizeRNA versions 1.3.2 dated 2019-08-20 and 1.3.3 dated 2025-04-08
DESCRIPTION | 8 ++++---- MD5 | 11 ++++++----- R/ssize.twoSampVaryDelta.R | 6 +++--- build/partial.rdb |only inst/doc/ssizeRNA.pdf |binary man/hammer.eset.Rd | 2 +- man/ssize.twoSampVaryDelta.Rd | 6 +++--- 7 files changed, 17 insertions(+), 16 deletions(-)
Title: A Collection of Efficient and Extremely Fast R Functions II
Description: A collection of fast statistical and utility functions for data analysis. Functions for regression, maximum likelihood, column-wise statistics and many more have been included. C++ has been utilized to speed up the functions. References: Tsagris M., Papadakis M. (2018). Taking R to its limits: 70+ tips. PeerJ Preprints 6:e26605v1 <doi:10.7287/peerj.preprints.26605v1>.
Author: Manos Papadakis [aut, cre, cph],
Michail Tsagris [aut],
Stefanos Fafalios [aut],
Marios Dimitriadis [aut],
Manos Lasithiotakis [aut],
Nikolaos Kontemeniotis [ctb]
Maintainer: Manos Papadakis <rfastofficial@gmail.com>
Diff between Rfast2 versions 0.1.5.2 dated 2024-03-10 and 0.1.5.3 dated 2025-04-08
Rfast2-0.1.5.2/Rfast2/R/lm.parboot.R |only Rfast2-0.1.5.2/Rfast2/man/lm.parboot.Rd |only Rfast2-0.1.5.2/Rfast2/man/negbin.regs.Rd |only Rfast2-0.1.5.2/Rfast2/man/perm.ttest2.Rd |only Rfast2-0.1.5.2/Rfast2/man/propjs.reg.Rd |only Rfast2-0.1.5.3/Rfast2/DESCRIPTION | 26 - Rfast2-0.1.5.3/Rfast2/MD5 | 241 +++++---- Rfast2-0.1.5.3/Rfast2/NAMESPACE | 4 Rfast2-0.1.5.3/Rfast2/NEWS.md | 22 Rfast2-0.1.5.3/Rfast2/R/bessel.R |only Rfast2-0.1.5.3/Rfast2/R/eqdist.etest.R |only Rfast2-0.1.5.3/Rfast2/R/frechet.nn.R |only Rfast2-0.1.5.3/Rfast2/R/kernel.R |only Rfast2-0.1.5.3/Rfast2/R/lm.boot.R |only Rfast2-0.1.5.3/Rfast2/R/means_tests.R | 78 ++- Rfast2-0.1.5.3/Rfast2/R/naive.bayes.classifiers.R | 2 Rfast2-0.1.5.3/Rfast2/R/normal.etest.R | 2 Rfast2-0.1.5.3/Rfast2/R/pca_and_pcr.R | 7 Rfast2-0.1.5.3/Rfast2/R/random_generators.R | 2 Rfast2-0.1.5.3/Rfast2/R/rbeta1.R | 2 Rfast2-0.1.5.3/Rfast2/R/reg.mle.lda.R | 4 Rfast2-0.1.5.3/Rfast2/R/silhouette.R |only Rfast2-0.1.5.3/Rfast2/build/partial.rdb |binary Rfast2-0.1.5.3/Rfast2/inst/include/Rfast2/helpers.hpp | 232 ++++++--- Rfast2-0.1.5.3/Rfast2/inst/include/Rfast2/matrix.hpp | 1 Rfast2-0.1.5.3/Rfast2/inst/include/Rfast2/templates.h | 19 Rfast2-0.1.5.3/Rfast2/inst/include/Rfast2/templates_rfast2.h | 55 ++ Rfast2-0.1.5.3/Rfast2/inst/include/Rfast2/vector.hpp | 28 - Rfast2-0.1.5.3/Rfast2/man/Rfast2-package.Rd | 3 Rfast2-0.1.5.3/Rfast2/man/Runif.Rd | 31 - Rfast2-0.1.5.3/Rfast2/man/add.term.Rd | 15 Rfast2-0.1.5.3/Rfast2/man/batch.logistic.Rd | 4 Rfast2-0.1.5.3/Rfast2/man/bessel.Rd |only Rfast2-0.1.5.3/Rfast2/man/bic.regs.Rd | 4 Rfast2-0.1.5.3/Rfast2/man/big.knn.Rd | 4 Rfast2-0.1.5.3/Rfast2/man/bigknn.cv.Rd | 2 Rfast2-0.1.5.3/Rfast2/man/boot.james.Rd | 2 Rfast2-0.1.5.3/Rfast2/man/boot.student2.Rd | 2 Rfast2-0.1.5.3/Rfast2/man/boot.ttest1.Rd | 17 Rfast2-0.1.5.3/Rfast2/man/censpois.mle.Rd | 7 Rfast2-0.1.5.3/Rfast2/man/circ.cor1.Rd | 2 Rfast2-0.1.5.3/Rfast2/man/collognorm.mle.Rd | 9 Rfast2-0.1.5.3/Rfast2/man/cor_test.Rd | 2 Rfast2-0.1.5.3/Rfast2/man/covdist.Rd | 4 Rfast2-0.1.5.3/Rfast2/man/covlikel.Rd | 4 Rfast2-0.1.5.3/Rfast2/man/depth.mahala.Rd | 2 Rfast2-0.1.5.3/Rfast2/man/el.cor.test.Rd | 2 Rfast2-0.1.5.3/Rfast2/man/empirical.entropy.Rd | 3 Rfast2-0.1.5.3/Rfast2/man/eqdist.etest.Rd |only Rfast2-0.1.5.3/Rfast2/man/fedhc.skel.Rd | 4 Rfast2-0.1.5.3/Rfast2/man/fp.Rd | 4 Rfast2-0.1.5.3/Rfast2/man/frechet.nn.Rd |only Rfast2-0.1.5.3/Rfast2/man/gammapois.mle.Rd | 2 Rfast2-0.1.5.3/Rfast2/man/gammaregs.Rd | 3 Rfast2-0.1.5.3/Rfast2/man/halfcauchy.mle.Rd | 2 Rfast2-0.1.5.3/Rfast2/man/hcf.circaov.Rd | 2 Rfast2-0.1.5.3/Rfast2/man/het.lmfit.Rd | 4 Rfast2-0.1.5.3/Rfast2/man/hp.reg.Rd | 4 Rfast2-0.1.5.3/Rfast2/man/is.skew.symmetric.Rd | 6 Rfast2-0.1.5.3/Rfast2/man/kernel.Rd |only Rfast2-0.1.5.3/Rfast2/man/lm.boot.Rd |only Rfast2-0.1.5.3/Rfast2/man/lm.bsreg.Rd | 4 Rfast2-0.1.5.3/Rfast2/man/logiquant.regs.Rd | 4 Rfast2-0.1.5.3/Rfast2/man/macros/system.Rd | 3 Rfast2-0.1.5.3/Rfast2/man/mci.Rd | 4 Rfast2-0.1.5.3/Rfast2/man/mmhc.skel.Rd | 4 Rfast2-0.1.5.3/Rfast2/man/mmpc.Rd | 10 Rfast2-0.1.5.3/Rfast2/man/moranI.Rd | 4 Rfast2-0.1.5.3/Rfast2/man/multinomreg.cv.Rd | 2 Rfast2-0.1.5.3/Rfast2/man/multivm.mle.Rd | 1 Rfast2-0.1.5.3/Rfast2/man/nb.cv.Rd | 4 Rfast2-0.1.5.3/Rfast2/man/negbin.reg.Rd | 41 + Rfast2-0.1.5.3/Rfast2/man/normal.etest.Rd | 2 Rfast2-0.1.5.3/Rfast2/man/omp2.Rd | 3 Rfast2-0.1.5.3/Rfast2/man/pc.sel.Rd | 4 Rfast2-0.1.5.3/Rfast2/man/pca.Rd | 2 Rfast2-0.1.5.3/Rfast2/man/pcr.Rd | 6 Rfast2-0.1.5.3/Rfast2/man/perm.ttest.Rd |only Rfast2-0.1.5.3/Rfast2/man/prophelling.reg.Rd |only Rfast2-0.1.5.3/Rfast2/man/propols.reg.Rd | 4 Rfast2-0.1.5.3/Rfast2/man/purka.mle.Rd | 4 Rfast2-0.1.5.3/Rfast2/man/regmlelda.cv.Rd | 4 Rfast2-0.1.5.3/Rfast2/man/score.zipregs.Rd | 2 Rfast2-0.1.5.3/Rfast2/man/silhouette.Rd |only Rfast2-0.1.5.3/Rfast2/man/sp.logiregs.Rd | 2 Rfast2-0.1.5.3/Rfast2/man/tobit.reg.Rd | 4 Rfast2-0.1.5.3/Rfast2/man/weib.regs.Rd | 4 Rfast2-0.1.5.3/Rfast2/man/weibullnb.pred.Rd | 4 Rfast2-0.1.5.3/Rfast2/man/welch.tests.Rd | 2 Rfast2-0.1.5.3/Rfast2/man/wild.boot.Rd | 9 Rfast2-0.1.5.3/Rfast2/src/Eval.cpp | 1 Rfast2-0.1.5.3/Rfast2/src/Makevars | 4 Rfast2-0.1.5.3/Rfast2/src/Makevars.win | 4 Rfast2-0.1.5.3/Rfast2/src/Random.cpp | 256 ++++++++-- Rfast2-0.1.5.3/Rfast2/src/Random.h | 248 ++++++++-- Rfast2-0.1.5.3/Rfast2/src/add_term.cpp | 1 Rfast2-0.1.5.3/Rfast2/src/calc_qpois_regs.h | 1 Rfast2-0.1.5.3/Rfast2/src/censweib_reg.cpp | 1 Rfast2-0.1.5.3/Rfast2/src/col_row_utilities.cpp | 3 Rfast2-0.1.5.3/Rfast2/src/colbeta_mle.cpp | 1 Rfast2-0.1.5.3/Rfast2/src/colcauchy_mle.cpp | 1 Rfast2-0.1.5.3/Rfast2/src/colspml_mle.cpp | 1 Rfast2-0.1.5.3/Rfast2/src/cts.h | 1 Rfast2-0.1.5.3/Rfast2/src/fbed_reg.cpp | 1 Rfast2-0.1.5.3/Rfast2/src/fedhc_skeleton.cpp | 15 Rfast2-0.1.5.3/Rfast2/src/frechet_nn.cpp |only Rfast2-0.1.5.3/Rfast2/src/gamma_reg.cpp | 1 Rfast2-0.1.5.3/Rfast2/src/gamma_regs.cpp | 1 Rfast2-0.1.5.3/Rfast2/src/init.c | 22 Rfast2-0.1.5.3/Rfast2/src/is_symmetric.cpp | 1 Rfast2-0.1.5.3/Rfast2/src/kernel.cpp |only Rfast2-0.1.5.3/Rfast2/src/mmhc_skeleton.cpp | 11 Rfast2-0.1.5.3/Rfast2/src/mmp_c.cpp | 2 Rfast2-0.1.5.3/Rfast2/src/mmp_c.h | 1 Rfast2-0.1.5.3/Rfast2/src/mmpc2.cpp | 1 Rfast2-0.1.5.3/Rfast2/src/mn.cpp | 5 Rfast2-0.1.5.3/Rfast2/src/mn.h | 3 Rfast2-0.1.5.3/Rfast2/src/multinom_reg.cpp | 1 Rfast2-0.1.5.3/Rfast2/src/negbin_reg.cpp | 1 Rfast2-0.1.5.3/Rfast2/src/negbin_regs.cpp | 1 Rfast2-0.1.5.3/Rfast2/src/reg_lib2.cpp | 1 Rfast2-0.1.5.3/Rfast2/src/reg_lib2.h | 1 Rfast2-0.1.5.3/Rfast2/src/reg_lib_helper.cpp | 1 Rfast2-0.1.5.3/Rfast2/src/reg_lib_helper.h | 1 Rfast2-0.1.5.3/Rfast2/src/sf.cpp | 1 Rfast2-0.1.5.3/Rfast2/src/skel_helper.cpp | 13 Rfast2-0.1.5.3/Rfast2/src/skel_helper.h | 11 Rfast2-0.1.5.3/Rfast2/src/univariate_mle.cpp | 11 Rfast2-0.1.5.3/Rfast2/src/utilities.cpp | 267 ++++++----- Rfast2-0.1.5.3/Rfast2/src/weib_regs.cpp | 1 Rfast2-0.1.5.3/Rfast2/src/welch_tests.cpp | 21 Rfast2-0.1.5.3/Rfast2/src/wild_boot.cpp | 9 132 files changed, 1308 insertions(+), 632 deletions(-)
Title: Bayesian Variable Selection with Hierarchical Priors
Description: Bayesian variable selection for linear regression models using hierarchical
priors. There is a prior that combines information across responses and one
that combines information across covariates, as well as a standard spike and
slab prior for comparison. An MCMC samples from the marginal posterior
distribution for the 0-1 variables indicating if each covariate belongs to the
model for each response.
Author: Laurel Stell [aut, cre],
Chiara Sabatti [aut]
Maintainer: Laurel Stell <lstell@stanford.edu>
Diff between ptycho versions 1.1-4 dated 2015-11-12 and 1.1-5 dated 2025-04-08
DESCRIPTION | 18 +++++++++++++----- MD5 | 6 +++--- man/ptycho-package.Rd | 2 +- man/ptycho.Rd | 4 ++-- 4 files changed, 19 insertions(+), 11 deletions(-)
Title: Another Approach to Package Installation
Description: The goal of 'pak' is to make package installation faster and
more reliable. In particular, it performs all HTTP operations in
parallel, so metadata resolution and package downloads are fast.
Metadata and package files are cached on the local disk as well. 'pak'
has a dependency solver, so it finds version conflicts before
performing the installation. This version of 'pak' supports CRAN,
'Bioconductor' and 'GitHub' packages as well.
Author: Gabor Csardi [aut, cre],
Jim Hester [aut],
Posit Software, PBC [cph, fnd],
Winston Chang [ctb] ,
Ascent Digital Services [cph, fnd] ,
Hadley Wickham [ctb, cph] ,
Jeroen Ooms [ctb] ,
Maelle Salmon [ctb] ,
Duncan Temple Lang [ctb] ,
Lloyd Hilaiel [cph] [...truncated...]
Maintainer: Gabor Csardi <csardi.gabor@gmail.com>
Diff between pak versions 0.8.0.1 dated 2025-01-16 and 0.8.0.2 dated 2025-04-08
pak-0.8.0.1/pak/src/library/jsonlite/src/modp_stdint.h |only pak-0.8.0.2/pak/DESCRIPTION | 8 pak-0.8.0.2/pak/MD5 | 222 ++-- pak-0.8.0.2/pak/NEWS.md | 4 pak-0.8.0.2/pak/src/library/cli/DESCRIPTION | 18 pak-0.8.0.2/pak/src/library/cli/NAMESPACE | 8 pak-0.8.0.2/pak/src/library/cli/NEWS.md | 37 pak-0.8.0.2/pak/src/library/cli/R/aaa-utils.R | 2 pak-0.8.0.2/pak/src/library/cli/R/aab-rstudio-detect.R | 11 pak-0.8.0.2/pak/src/library/cli/R/ansi-hyperlink.R | 240 +++-- pak-0.8.0.2/pak/src/library/cli/R/assertions.R | 2 pak-0.8.0.2/pak/src/library/cli/R/cliapp-docs.R | 5 pak-0.8.0.2/pak/src/library/cli/R/cliapp.R | 6 pak-0.8.0.2/pak/src/library/cli/R/friendly-type.R | 2 pak-0.8.0.2/pak/src/library/cli/R/glue.R | 11 pak-0.8.0.2/pak/src/library/cli/R/hash.R | 115 ++ pak-0.8.0.2/pak/src/library/cli/R/inline.R | 4 pak-0.8.0.2/pak/src/library/cli/R/internals.R | 2 pak-0.8.0.2/pak/src/library/cli/R/mocks.R |only pak-0.8.0.2/pak/src/library/cli/R/num-ansi-colors.R | 5 pak-0.8.0.2/pak/src/library/cli/R/pluralize.R | 30 pak-0.8.0.2/pak/src/library/cli/R/prettycode.R | 31 pak-0.8.0.2/pak/src/library/cli/R/progress-client.R | 5 pak-0.8.0.2/pak/src/library/cli/R/simple-theme.R | 2 pak-0.8.0.2/pak/src/library/cli/R/spark.R | 4 pak-0.8.0.2/pak/src/library/cli/R/test.R | 21 pak-0.8.0.2/pak/src/library/cli/R/themes.R | 2 pak-0.8.0.2/pak/src/library/cli/R/vt.R | 14 pak-0.8.0.2/pak/src/library/cli/exec/up.R | 2 pak-0.8.0.2/pak/src/library/cli/src/Makevars | 1 pak-0.8.0.2/pak/src/library/cli/src/cli.h | 10 pak-0.8.0.2/pak/src/library/cli/src/diff.c | 8 pak-0.8.0.2/pak/src/library/cli/src/init.c | 6 pak-0.8.0.2/pak/src/library/cli/src/progress.c | 6 pak-0.8.0.2/pak/src/library/cli/src/xxhash.c |only pak-0.8.0.2/pak/src/library/cli/src/xxhash.h |only pak-0.8.0.2/pak/src/library/cli/src/xxhash2.c |only pak-0.8.0.2/pak/src/library/cli/tools/get-rstudio-themes.R | 2 pak-0.8.0.2/pak/src/library/cli/tools/spinners.R | 8 pak-0.8.0.2/pak/src/library/jsonlite/DESCRIPTION | 10 pak-0.8.0.2/pak/src/library/jsonlite/NEWS | 10 pak-0.8.0.2/pak/src/library/jsonlite/src/modp_numtoa.c | 5 pak-0.8.0.2/pak/src/library/jsonlite/src/modp_numtoa.h | 4 pak-0.8.0.2/pak/src/library/jsonlite/src/r-base64.c | 1 pak-0.8.0.2/pak/src/library/lpSolve/DESCRIPTION | 2 pak-0.8.0.2/pak/src/library/pkgbuild/DESCRIPTION | 12 pak-0.8.0.2/pak/src/library/pkgbuild/NEWS.md | 20 pak-0.8.0.2/pak/src/library/pkgbuild/R/build-bg.R | 8 pak-0.8.0.2/pak/src/library/pkgbuild/R/build-tools.R | 21 pak-0.8.0.2/pak/src/library/pkgbuild/R/compile-dll.R | 4 pak-0.8.0.2/pak/src/library/pkgbuild/R/pkgbuild-package.R | 19 pak-0.8.0.2/pak/src/library/pkgbuild/R/rtools-metadata.R | 20 pak-0.8.0.2/pak/src/library/pkgbuild/R/rtools-path.R | 4 pak-0.8.0.2/pak/src/library/pkgbuild/R/rtools.R | 68 + pak-0.8.0.2/pak/src/library/pkgcache/DESCRIPTION | 6 pak-0.8.0.2/pak/src/library/pkgcache/NAMESPACE | 2 pak-0.8.0.2/pak/src/library/pkgcache/NEWS.md | 8 pak-0.8.0.2/pak/src/library/pkgcache/R/aaa-async.R | 5 pak-0.8.0.2/pak/src/library/pkgcache/R/archive.R | 10 pak-0.8.0.2/pak/src/library/pkgcache/R/async-http.R | 19 pak-0.8.0.2/pak/src/library/pkgcache/R/auth.R |only pak-0.8.0.2/pak/src/library/pkgcache/R/bioc.R | 4 pak-0.8.0.2/pak/src/library/pkgcache/R/cran-app.R | 61 + pak-0.8.0.2/pak/src/library/pkgcache/R/metadata-cache.R | 18 pak-0.8.0.2/pak/src/library/pkgcache/R/onload.R | 2 pak-0.8.0.2/pak/src/library/pkgcache/R/packages-gz.R | 26 pak-0.8.0.2/pak/src/library/pkgcache/R/parse-url.R | 3 pak-0.8.0.2/pak/src/library/pkgcache/R/ppm.R | 10 pak-0.8.0.2/pak/src/library/pkgcache/R/repo-set.R | 34 pak-0.8.0.2/pak/src/library/pkgcache/R/repo-status.R | 17 pak-0.8.0.2/pak/src/library/pkgcache/R/utils.R | 4 pak-0.8.0.2/pak/src/library/pkgcache/inst/WORDLIST | 3 pak-0.8.0.2/pak/src/library/pkgcache/src/lib.c | 5 pak-0.8.0.2/pak/src/library/pkgsearch/DESCRIPTION | 7 pak-0.8.0.2/pak/src/library/pkgsearch/NEWS.md | 2 pak-0.8.0.2/pak/src/library/pkgsearch/R/http.R | 2 pak-0.8.0.2/pak/src/library/processx/DESCRIPTION | 6 pak-0.8.0.2/pak/src/library/processx/NEWS.md | 11 pak-0.8.0.2/pak/src/library/processx/R/process.R | 1 pak-0.8.0.2/pak/src/library/processx/R/utils.R | 3 pak-0.8.0.2/pak/src/library/processx/src/Makevars | 13 pak-0.8.0.2/pak/src/library/processx/src/win/stdio.c | 11 pak-0.8.0.2/pak/src/library/ps/DESCRIPTION | 10 pak-0.8.0.2/pak/src/library/ps/NAMESPACE | 6 pak-0.8.0.2/pak/src/library/ps/NEWS.md | 47 + pak-0.8.0.2/pak/src/library/ps/R/cleancall.R |only pak-0.8.0.2/pak/src/library/ps/R/disk.R | 302 ++++++ pak-0.8.0.2/pak/src/library/ps/R/iso-date.R |only pak-0.8.0.2/pak/src/library/ps/R/kill-tree.R | 39 pak-0.8.0.2/pak/src/library/ps/R/linux.R | 107 ++ pak-0.8.0.2/pak/src/library/ps/R/low-level.R | 278 +++++ pak-0.8.0.2/pak/src/library/ps/R/macos.R |only pak-0.8.0.2/pak/src/library/ps/R/ps.R | 309 +++++- pak-0.8.0.2/pak/src/library/ps/R/rematch2.R |only pak-0.8.0.2/pak/src/library/ps/R/testthat-reporter.R | 59 + pak-0.8.0.2/pak/src/library/ps/R/utils.R | 42 pak-0.8.0.2/pak/src/library/ps/configure | 11 pak-0.8.0.2/pak/src/library/ps/src/api-linux.c | 582 +++++++++++- pak-0.8.0.2/pak/src/library/ps/src/api-macos.c | 468 ++++++++- pak-0.8.0.2/pak/src/library/ps/src/api-posix.c | 311 ++++++ pak-0.8.0.2/pak/src/library/ps/src/api-windows.c | 609 +++++++++++-- pak-0.8.0.2/pak/src/library/ps/src/arch/macos/apps.m |only pak-0.8.0.2/pak/src/library/ps/src/arch/macos/disk.c |only pak-0.8.0.2/pak/src/library/ps/src/cleancall.c |only pak-0.8.0.2/pak/src/library/ps/src/cleancall.h |only pak-0.8.0.2/pak/src/library/ps/src/dummy.c | 18 pak-0.8.0.2/pak/src/library/ps/src/extra.c | 24 pak-0.8.0.2/pak/src/library/ps/src/init.c | 29 pak-0.8.0.2/pak/src/library/ps/src/ps-internal.h | 9 pak-0.8.0.2/pak/src/library/ps/src/ps.h | 10 pak-0.8.0.2/pak/src/library/ps/src/px.c | 57 + pak-0.8.0.2/pak/src/library/ps/tools |only pak-0.8.0.2/pak/src/library/zip/DESCRIPTION | 8 pak-0.8.0.2/pak/src/library/zip/NEWS.md | 5 pak-0.8.0.2/pak/src/library/zip/R/compat-vctrs.R |only pak-0.8.0.2/pak/src/library/zip/R/utils.R | 15 pak-0.8.0.2/pak/src/library/zip/R/zip.R | 6 pak-0.8.0.2/pak/src/library/zip/src/init.c | 1 pak-0.8.0.2/pak/src/library/zip/src/rzip.c | 4 pak-0.8.0.2/pak/src/library/zip/src/zip.c | 2 120 files changed, 4062 insertions(+), 661 deletions(-)
Title: Odds Ratio Calculation for GAM(M)s & GLM(M)s
Description: Simplified odds ratio calculation of GAM(M)s & GLM(M)s.
Provides structured output (data frame) of all predictors and their
corresponding odds ratios and confident intervals for further
analyses. It helps to avoid false references of predictors and
increments by specifying these parameters in a list instead of using
'exp(coef(model))' (standard approach of odds ratio calculation for
GLMs) which just returns a plain numeric output. For GAM(M)s, odds
ratio calculation is highly simplified with this package since it
takes care of the multiple 'predict()' calls of the chosen predictor
while holding other predictors constant. Also, this package allows
odds ratio calculation of percentage steps across the whole predictor
distribution range for GAM(M)s. In both cases, confident intervals
are returned additionally. Calculated odds ratio of GAM(M)s can be
inserted into the smooth function plot.
Author: Patrick Schratz [aut, cre]
Maintainer: Patrick Schratz <patrick.schratz@gmail.com>
Diff between oddsratio versions 2.0.1 dated 2020-05-24 and 2.0.2 dated 2025-04-08
DESCRIPTION | 23 LICENSE | 2 MD5 | 34 NEWS.md | 10 R/helper_funs.R | 7 R/insert_or.R | 6 R/or_gam.R | 2 R/or_glm.R | 5 R/plot_gam.R | 7 build/vignette.rds |binary inst/CITATION | 18 inst/WORDLIST | 1536 ++++++++++++++++++++++++++++++++++++++++++- inst/doc/oddsratio.R | 4 inst/doc/oddsratio.Rmd | 2 inst/doc/oddsratio.html | 398 ++++++----- man/insert_or.Rd | 2 tests/testthat/test-or-glm.R | 2 vignettes/oddsratio.Rmd | 2 18 files changed, 1834 insertions(+), 226 deletions(-)
Title: Convert Words to Numbers in Multiple Languages
Description: Converts number spellings into their equivalent numbers.
Supports numbers written in English, French, or Spanish.
Author: Chris Hartgerink [rev] ,
Ulysse Boucherie [ctb]
,
Joshua W. Lambert [ctb] ,
Karim Mane [ctb] ,
Hugo Gruson [aut] ,
Bankole Ahadzie [aut, cre],
London School of Hygiene and Tropical Medicine, LSHTM [cph]
Maintainer: Bankole Ahadzie <bankole.ahadzie@lshtm.ac.uk>
Diff between numberize versions 1.0.1 dated 2024-10-28 and 1.0.2 dated 2025-04-08
DESCRIPTION | 28 ++++++++++++-------- MD5 | 10 +++---- NEWS.md | 7 ++++- R/numberize.R | 55 +++++++++++++++++----------------------- inst/WORDLIST | 6 ++++ tests/testthat/test-numberize.R | 15 ++++++++-- 6 files changed, 70 insertions(+), 51 deletions(-)
Title: 'Asio' C++ Header Files
Description: 'Asio' is a cross-platform C++ library for network and low-level
I/O programming that provides developers with a consistent asynchronous model
using a modern C++ approach. It is also included in Boost but requires linking
when used with Boost. Standalone it can be used header-only (provided a recent
compiler). 'Asio' is written and maintained by Christopher M. Kohlhoff, and
released under the 'Boost Software License', Version 1.0.
Author: Dirk Eddelbuettel [aut, cre] ,
Christopher M. Kohlhoff [aut]
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between AsioHeaders versions 1.22.1-2 dated 2022-12-08 and 1.28.2-1 dated 2025-04-08
AsioHeaders-1.22.1-2/AsioHeaders/inst/include/asio/experimental/detail/completion_handler_erasure.hpp |only AsioHeaders-1.22.1-2/AsioHeaders/inst/include/asio/experimental/impl/append.hpp |only AsioHeaders-1.22.1-2/AsioHeaders/inst/include/asio/experimental/impl/as_tuple.hpp |only AsioHeaders-1.22.1-2/AsioHeaders/inst/include/asio/experimental/impl/deferred.hpp |only AsioHeaders-1.22.1-2/AsioHeaders/inst/include/asio/experimental/impl/prepend.hpp |only AsioHeaders-1.22.1-2/AsioHeaders/inst/include/asio/impl/compose.hpp |only AsioHeaders-1.22.1-2/AsioHeaders/inst/include/asio/impl/defer.hpp |only AsioHeaders-1.22.1-2/AsioHeaders/inst/include/asio/impl/dispatch.hpp |only AsioHeaders-1.22.1-2/AsioHeaders/inst/include/asio/impl/post.hpp |only AsioHeaders-1.28.2-1/AsioHeaders/ChangeLog | 27 AsioHeaders-1.28.2-1/AsioHeaders/DESCRIPTION | 17 AsioHeaders-1.28.2-1/AsioHeaders/MD5 | 1332 ++++---- AsioHeaders-1.28.2-1/AsioHeaders/NAMESPACE | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/NEWS.Rd | 9 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio.hpp | 17 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/any_completion_executor.hpp |only AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/any_completion_handler.hpp |only AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/any_io_executor.hpp | 58 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/append.hpp |only AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/as_tuple.hpp |only AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/associated_allocator.hpp | 108 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/associated_cancellation_slot.hpp | 78 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/associated_executor.hpp | 53 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/associated_immediate_executor.hpp |only AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/associator.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/async_result.hpp | 402 ++ AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/awaitable.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/basic_datagram_socket.hpp | 85 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/basic_deadline_timer.hpp | 14 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/basic_file.hpp | 6 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/basic_io_object.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/basic_random_access_file.hpp | 22 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/basic_raw_socket.hpp | 85 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/basic_readable_pipe.hpp | 114 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/basic_seq_packet_socket.hpp | 41 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/basic_serial_port.hpp | 73 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/basic_signal_set.hpp | 69 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/basic_socket.hpp | 25 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/basic_socket_acceptor.hpp | 161 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/basic_socket_iostream.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/basic_socket_streambuf.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/basic_stream_file.hpp | 22 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/basic_stream_socket.hpp | 61 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/basic_streambuf.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/basic_streambuf_fwd.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/basic_waitable_timer.hpp | 18 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/basic_writable_pipe.hpp | 114 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/bind_allocator.hpp | 55 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/bind_cancellation_slot.hpp | 56 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/bind_executor.hpp | 21 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/bind_immediate_executor.hpp |only AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/buffer.hpp | 399 ++ AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/buffer_registration.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/buffered_read_stream.hpp | 41 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/buffered_read_stream_fwd.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/buffered_stream.hpp | 33 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/buffered_stream_fwd.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/buffered_write_stream.hpp | 41 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/buffered_write_stream_fwd.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/buffers_iterator.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/cancellation_signal.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/cancellation_state.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/cancellation_type.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/co_spawn.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/completion_condition.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/compose.hpp | 428 ++ AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/connect.hpp | 61 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/connect_pipe.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/consign.hpp |only AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/coroutine.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/deadline_timer.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/defer.hpp | 76 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/deferred.hpp |only AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detached.hpp | 11 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/array.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/array_fwd.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/assert.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/atomic_count.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/base_from_cancellation_state.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/base_from_completion_cond.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/bind_handler.hpp | 124 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/blocking_executor_op.hpp | 3 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/buffer_resize_guard.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/buffer_sequence_adapter.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/buffered_stream_storage.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/bulk_executor_op.hpp | 3 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/call_stack.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/chrono.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/chrono_time_traits.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/completion_handler.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/composed_work.hpp |only AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/concurrency_hint.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/conditionally_enabled_event.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/conditionally_enabled_mutex.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/config.hpp | 367 ++ AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/consuming_buffers.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/cstddef.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/cstdint.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/date_time_fwd.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/deadline_timer_service.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/dependent_type.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/descriptor_ops.hpp | 4 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/descriptor_read_op.hpp | 42 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/descriptor_write_op.hpp | 41 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/dev_poll_reactor.hpp | 23 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/epoll_reactor.hpp | 23 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/event.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/eventfd_select_interrupter.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/exception.hpp |only AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/executor_function.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/executor_op.hpp | 3 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/fd_set_adapter.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/fenced_block.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/functional.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/future.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/gcc_arm_fenced_block.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/gcc_hppa_fenced_block.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/gcc_sync_fenced_block.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/gcc_x86_fenced_block.hpp | 4 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/global.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/handler_alloc_helpers.hpp | 10 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/handler_cont_helpers.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/handler_invoke_helpers.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/handler_tracking.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/handler_type_requirements.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/handler_work.hpp | 64 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/hash_map.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/impl/buffer_sequence_adapter.ipp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/impl/descriptor_ops.ipp | 55 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/impl/dev_poll_reactor.hpp | 4 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/impl/dev_poll_reactor.ipp | 17 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/impl/epoll_reactor.hpp | 4 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/impl/epoll_reactor.ipp | 25 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/impl/eventfd_select_interrupter.ipp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/impl/handler_tracking.ipp | 8 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/impl/io_uring_descriptor_service.ipp | 5 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/impl/io_uring_file_service.ipp | 11 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/impl/io_uring_service.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/impl/io_uring_service.ipp | 104 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/impl/io_uring_socket_service_base.ipp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/impl/kqueue_reactor.hpp | 4 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/impl/kqueue_reactor.ipp | 21 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/impl/null_event.ipp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/impl/pipe_select_interrupter.ipp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/impl/posix_event.ipp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/impl/posix_mutex.ipp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/impl/posix_serial_port_service.ipp | 23 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/impl/posix_thread.ipp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/impl/posix_tss_ptr.ipp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/impl/reactive_descriptor_service.ipp | 21 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/impl/reactive_socket_service_base.ipp | 44 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/impl/resolver_service_base.ipp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/impl/scheduler.ipp | 3 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/impl/select_reactor.hpp | 4 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/impl/select_reactor.ipp | 53 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/impl/service_registry.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/impl/service_registry.ipp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/impl/signal_set_service.ipp | 61 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/impl/socket_ops.ipp | 261 - AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/impl/socket_select_interrupter.ipp | 8 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/impl/strand_executor_service.hpp | 17 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/impl/strand_executor_service.ipp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/impl/strand_service.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/impl/strand_service.ipp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/impl/thread_context.ipp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/impl/throw_error.ipp | 22 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/impl/timer_queue_ptime.ipp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/impl/timer_queue_set.ipp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/impl/win_event.ipp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/impl/win_iocp_file_service.ipp | 29 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/impl/win_iocp_handle_service.ipp | 23 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/impl/win_iocp_io_context.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/impl/win_iocp_io_context.ipp | 11 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/impl/win_iocp_serial_port_service.ipp | 10 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/impl/win_iocp_socket_service_base.ipp | 22 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/impl/win_mutex.ipp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/impl/win_object_handle_service.ipp | 6 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/impl/win_static_mutex.ipp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/impl/win_thread.ipp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/impl/win_tss_ptr.ipp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/impl/winrt_ssocket_service_base.ipp | 8 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/impl/winrt_timer_scheduler.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/impl/winrt_timer_scheduler.ipp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/impl/winsock_init.ipp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/initiate_defer.hpp |only AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/initiate_dispatch.hpp |only AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/initiate_post.hpp |only AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/io_control.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/io_object_impl.hpp | 13 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/io_uring_descriptor_read_at_op.hpp | 7 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/io_uring_descriptor_read_op.hpp | 7 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/io_uring_descriptor_service.hpp | 40 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/io_uring_descriptor_write_at_op.hpp | 7 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/io_uring_descriptor_write_op.hpp | 7 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/io_uring_file_service.hpp | 5 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/io_uring_null_buffers_op.hpp | 6 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/io_uring_operation.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/io_uring_service.hpp | 7 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/io_uring_socket_accept_op.hpp | 10 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/io_uring_socket_connect_op.hpp | 6 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/io_uring_socket_recv_op.hpp | 7 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/io_uring_socket_recvfrom_op.hpp | 7 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/io_uring_socket_recvmsg_op.hpp | 7 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/io_uring_socket_send_op.hpp | 7 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/io_uring_socket_sendto_op.hpp | 7 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/io_uring_socket_service.hpp | 44 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/io_uring_socket_service_base.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/io_uring_wait_op.hpp | 6 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/is_buffer_sequence.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/is_executor.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/keyword_tss_ptr.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/kqueue_reactor.hpp | 23 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/local_free_on_block_exit.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/macos_fenced_block.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/memory.hpp | 35 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/mutex.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/non_const_lvalue.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/noncopyable.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/null_event.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/null_fenced_block.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/null_global.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/null_mutex.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/null_reactor.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/null_signal_blocker.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/null_socket_service.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/null_static_mutex.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/null_thread.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/null_tss_ptr.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/object_pool.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/old_win_sdk_compat.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/op_queue.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/operation.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/pipe_select_interrupter.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/pop_options.hpp | 6 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/posix_event.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/posix_fd_set_adapter.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/posix_global.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/posix_mutex.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/posix_serial_port_service.hpp | 3 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/posix_signal_blocker.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/posix_static_mutex.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/posix_thread.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/posix_tss_ptr.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/push_options.hpp | 13 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/reactive_descriptor_service.hpp | 105 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/reactive_null_buffers_op.hpp | 36 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/reactive_socket_accept_op.hpp | 88 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/reactive_socket_connect_op.hpp | 42 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/reactive_socket_recv_op.hpp | 41 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/reactive_socket_recvfrom_op.hpp | 42 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/reactive_socket_recvmsg_op.hpp | 42 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/reactive_socket_send_op.hpp | 42 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/reactive_socket_sendto_op.hpp | 41 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/reactive_socket_service.hpp | 66 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/reactive_socket_service_base.hpp | 158 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/reactive_wait_op.hpp | 36 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/reactor.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/reactor_op.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/reactor_op_queue.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/recycling_allocator.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/regex_fwd.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/resolve_endpoint_op.hpp | 3 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/resolve_op.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/resolve_query_op.hpp | 3 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/resolver_service.hpp | 4 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/resolver_service_base.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/scheduler.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/scheduler_operation.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/scheduler_task.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/scheduler_thread_info.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/scoped_lock.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/scoped_ptr.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/select_interrupter.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/select_reactor.hpp | 45 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/service_registry.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/signal_blocker.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/signal_handler.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/signal_init.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/signal_op.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/signal_set_service.hpp | 13 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/socket_holder.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/socket_ops.hpp | 82 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/socket_option.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/socket_select_interrupter.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/socket_types.hpp | 12 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/solaris_fenced_block.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/source_location.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/static_mutex.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/std_event.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/std_fenced_block.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/std_global.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/std_mutex.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/std_static_mutex.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/std_thread.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/strand_executor_service.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/strand_service.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/string_view.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/thread.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/thread_context.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/thread_group.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/thread_info_base.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/throw_error.hpp | 31 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/throw_exception.hpp | 10 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/timer_queue.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/timer_queue_base.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/timer_queue_ptime.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/timer_queue_set.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/timer_scheduler.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/timer_scheduler_fwd.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/tss_ptr.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/type_traits.hpp | 10 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/utility.hpp |only AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/variadic_templates.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/wait_handler.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/wait_op.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/win_event.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/win_fd_set_adapter.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/win_fenced_block.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/win_global.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/win_iocp_file_service.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/win_iocp_handle_read_op.hpp | 5 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/win_iocp_handle_service.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/win_iocp_handle_write_op.hpp | 9 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/win_iocp_io_context.hpp | 4 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/win_iocp_null_buffers_op.hpp | 5 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/win_iocp_operation.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/win_iocp_overlapped_op.hpp | 9 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/win_iocp_overlapped_ptr.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/win_iocp_serial_port_service.hpp | 3 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/win_iocp_socket_accept_op.hpp | 8 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/win_iocp_socket_connect_op.hpp | 6 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/win_iocp_socket_recv_op.hpp | 5 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/win_iocp_socket_recvfrom_op.hpp | 5 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/win_iocp_socket_recvmsg_op.hpp | 5 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/win_iocp_socket_send_op.hpp | 5 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/win_iocp_socket_service.hpp | 40 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/win_iocp_socket_service_base.hpp | 14 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/win_iocp_thread_info.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/win_iocp_wait_op.hpp | 5 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/win_mutex.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/win_object_handle_service.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/win_static_mutex.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/win_thread.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/win_tss_ptr.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/winapp_thread.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/wince_thread.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/winrt_async_manager.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/winrt_async_op.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/winrt_resolve_op.hpp | 3 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/winrt_resolver_service.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/winrt_socket_connect_op.hpp | 3 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/winrt_socket_recv_op.hpp | 3 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/winrt_socket_send_op.hpp | 3 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/winrt_ssocket_service.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/winrt_ssocket_service_base.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/winrt_timer_scheduler.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/winrt_utils.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/winsock_init.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/work_dispatcher.hpp | 14 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/detail/wrapped_handler.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/dispatch.hpp | 59 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/error.hpp | 37 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/error_code.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/execution.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/execution/allocator.hpp | 27 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/execution/any_executor.hpp | 664 +++ AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/execution/bad_executor.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/execution/blocking.hpp | 67 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/execution/blocking_adaptation.hpp | 59 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/execution/bulk_execute.hpp | 7 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/execution/bulk_guarantee.hpp | 47 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/execution/connect.hpp | 7 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/execution/context.hpp | 17 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/execution/context_as.hpp | 17 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/execution/detail/as_invocable.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/execution/detail/as_operation.hpp | 6 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/execution/detail/as_receiver.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/execution/detail/bulk_sender.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/execution/detail/submit_receiver.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/execution/detail/void_receiver.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/execution/execute.hpp | 13 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/execution/executor.hpp | 14 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/execution/impl/bad_executor.ipp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/execution/impl/receiver_invocation_error.ipp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/execution/invocable_archetype.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/execution/mapping.hpp | 62 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/execution/occupancy.hpp | 17 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/execution/operation_state.hpp | 7 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/execution/outstanding_work.hpp | 47 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/execution/prefer_only.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/execution/receiver.hpp | 7 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/execution/receiver_invocation_error.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/execution/relationship.hpp | 47 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/execution/schedule.hpp | 7 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/execution/scheduler.hpp | 7 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/execution/sender.hpp | 7 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/execution/set_done.hpp | 7 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/execution/set_error.hpp | 7 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/execution/set_value.hpp | 7 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/execution/start.hpp | 7 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/execution/submit.hpp | 7 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/execution_context.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/executor.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/executor_work_guard.hpp | 61 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/experimental/append.hpp | 47 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/experimental/as_single.hpp | 8 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/experimental/as_tuple.hpp | 108 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/experimental/awaitable_operators.hpp | 27 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/experimental/basic_channel.hpp | 73 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/experimental/basic_concurrent_channel.hpp | 73 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/experimental/cancellation_condition.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/experimental/channel.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/experimental/channel_error.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/experimental/channel_traits.hpp | 72 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/experimental/co_composed.hpp |only AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/experimental/co_spawn.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/experimental/concurrent_channel.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/experimental/coro.hpp | 42 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/experimental/coro_traits.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/experimental/deferred.hpp | 581 --- AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/experimental/detail/channel_handler.hpp | 18 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/experimental/detail/channel_message.hpp | 13 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/experimental/detail/channel_operation.hpp | 103 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/experimental/detail/channel_payload.hpp | 84 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/experimental/detail/channel_receive_op.hpp | 14 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/experimental/detail/channel_send_functions.hpp | 14 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/experimental/detail/channel_send_op.hpp | 12 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/experimental/detail/channel_service.hpp | 184 + AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/experimental/detail/coro_completion_handler.hpp |only AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/experimental/detail/coro_promise_allocator.hpp | 155 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/experimental/detail/has_signature.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/experimental/detail/impl/channel_service.hpp | 25 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/experimental/detail/partial_promise.hpp | 113 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/experimental/impl/as_single.hpp | 18 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/experimental/impl/channel_error.ipp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/experimental/impl/co_composed.hpp |only AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/experimental/impl/coro.hpp | 293 - AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/experimental/impl/parallel_group.hpp | 405 ++ AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/experimental/impl/promise.hpp | 212 + AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/experimental/impl/use_coro.hpp | 378 -- AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/experimental/impl/use_promise.hpp |only AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/experimental/parallel_group.hpp | 317 + AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/experimental/prepend.hpp | 47 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/experimental/promise.hpp | 547 --- AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/experimental/use_coro.hpp | 60 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/experimental/use_promise.hpp |only AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/file_base.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/generic/basic_endpoint.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/generic/datagram_protocol.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/generic/detail/endpoint.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/generic/detail/impl/endpoint.ipp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/generic/raw_protocol.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/generic/seq_packet_protocol.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/generic/stream_protocol.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/handler_alloc_hook.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/handler_continuation_hook.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/handler_invoke_hook.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/high_resolution_timer.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/impl/any_completion_executor.ipp |only AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/impl/any_io_executor.ipp | 14 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/impl/append.hpp |only AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/impl/as_tuple.hpp |only AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/impl/awaitable.hpp | 442 ++ AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/impl/buffered_read_stream.hpp | 47 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/impl/buffered_write_stream.hpp | 47 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/impl/cancellation_signal.ipp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/impl/co_spawn.hpp | 255 + AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/impl/connect.hpp | 82 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/impl/connect_pipe.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/impl/connect_pipe.ipp | 4 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/impl/consign.hpp |only AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/impl/deferred.hpp |only AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/impl/detached.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/impl/error.ipp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/impl/error_code.ipp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/impl/execution_context.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/impl/execution_context.ipp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/impl/executor.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/impl/executor.ipp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/impl/handler_alloc_hook.ipp | 4 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/impl/io_context.hpp | 12 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/impl/io_context.ipp | 3 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/impl/multiple_exceptions.ipp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/impl/prepend.hpp |only AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/impl/read.hpp | 147 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/impl/read_at.hpp | 83 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/impl/read_until.hpp | 222 + AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/impl/redirect_error.hpp | 93 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/impl/serial_port_base.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/impl/serial_port_base.ipp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/impl/spawn.hpp | 1661 ++++++++-- AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/impl/src.hpp | 3 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/impl/system_context.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/impl/system_context.ipp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/impl/system_executor.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/impl/thread_pool.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/impl/thread_pool.ipp | 9 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/impl/use_awaitable.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/impl/use_future.hpp | 31 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/impl/write.hpp | 161 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/impl/write_at.hpp | 85 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/io_context.hpp | 75 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/io_context_strand.hpp | 18 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/io_service.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/io_service_strand.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/ip/address.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/ip/address_v4.hpp | 81 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/ip/address_v4_iterator.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/ip/address_v4_range.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/ip/address_v6.hpp | 36 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/ip/address_v6_iterator.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/ip/address_v6_range.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/ip/bad_address_cast.hpp | 12 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/ip/basic_endpoint.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/ip/basic_resolver.hpp | 45 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/ip/basic_resolver_entry.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/ip/basic_resolver_iterator.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/ip/basic_resolver_query.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/ip/basic_resolver_results.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/ip/detail/endpoint.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/ip/detail/impl/endpoint.ipp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/ip/detail/socket_option.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/ip/host_name.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/ip/icmp.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/ip/impl/address.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/ip/impl/address.ipp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/ip/impl/address_v4.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/ip/impl/address_v4.ipp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/ip/impl/address_v6.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/ip/impl/address_v6.ipp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/ip/impl/basic_endpoint.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/ip/impl/host_name.ipp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/ip/impl/network_v4.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/ip/impl/network_v4.ipp | 8 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/ip/impl/network_v6.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/ip/impl/network_v6.ipp | 8 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/ip/multicast.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/ip/network_v4.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/ip/network_v6.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/ip/resolver_base.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/ip/resolver_query_base.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/ip/tcp.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/ip/udp.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/ip/unicast.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/ip/v6_only.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/is_applicable_property.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/is_contiguous_iterator.hpp |only AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/is_executor.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/is_read_buffered.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/is_write_buffered.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/local/basic_endpoint.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/local/connect_pair.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/local/datagram_protocol.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/local/detail/endpoint.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/local/detail/impl/endpoint.ipp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/local/seq_packet_protocol.hpp |only AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/local/stream_protocol.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/multiple_exceptions.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/packaged_task.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/placeholders.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/posix/basic_descriptor.hpp | 62 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/posix/basic_stream_descriptor.hpp | 66 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/posix/descriptor.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/posix/descriptor_base.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/posix/stream_descriptor.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/post.hpp | 76 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/prefer.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/prepend.hpp |only AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/query.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/random_access_file.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/read.hpp | 86 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/read_at.hpp | 51 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/read_until.hpp | 141 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/readable_pipe.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/recycling_allocator.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/redirect_error.hpp | 6 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/registered_buffer.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/require.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/require_concept.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/serial_port.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/serial_port_base.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/signal_set.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/signal_set_base.hpp |only AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/socket_base.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/spawn.hpp | 727 +++- AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/ssl.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/ssl/context.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/ssl/context_base.hpp | 48 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/ssl/detail/buffered_handshake_op.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/ssl/detail/engine.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/ssl/detail/handshake_op.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/ssl/detail/impl/engine.ipp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/ssl/detail/impl/openssl_init.ipp | 10 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/ssl/detail/io.hpp | 18 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/ssl/detail/openssl_init.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/ssl/detail/openssl_types.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/ssl/detail/password_callback.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/ssl/detail/read_op.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/ssl/detail/shutdown_op.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/ssl/detail/stream_core.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/ssl/detail/verify_callback.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/ssl/detail/write_op.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/ssl/error.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/ssl/host_name_verification.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/ssl/impl/context.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/ssl/impl/context.ipp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/ssl/impl/error.ipp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/ssl/impl/host_name_verification.ipp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/ssl/impl/rfc2818_verification.ipp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/ssl/impl/src.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/ssl/rfc2818_verification.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/ssl/stream.hpp | 39 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/ssl/stream_base.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/ssl/verify_context.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/ssl/verify_mode.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/static_thread_pool.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/steady_timer.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/strand.hpp | 31 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/stream_file.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/streambuf.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/system_context.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/system_error.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/system_executor.hpp | 15 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/system_timer.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/this_coro.hpp | 12 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/thread.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/thread_pool.hpp | 43 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/time_traits.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/traits/bulk_execute_free.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/traits/bulk_execute_member.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/traits/connect_free.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/traits/connect_member.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/traits/equality_comparable.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/traits/execute_free.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/traits/execute_member.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/traits/prefer_free.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/traits/prefer_member.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/traits/query_free.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/traits/query_member.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/traits/query_static_constexpr_member.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/traits/require_concept_free.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/traits/require_concept_member.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/traits/require_free.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/traits/require_member.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/traits/schedule_free.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/traits/schedule_member.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/traits/set_done_free.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/traits/set_done_member.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/traits/set_error_free.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/traits/set_error_member.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/traits/set_value_free.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/traits/set_value_member.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/traits/start_free.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/traits/start_member.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/traits/static_query.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/traits/static_require.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/traits/static_require_concept.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/traits/submit_free.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/traits/submit_member.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/ts/buffer.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/ts/executor.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/ts/internet.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/ts/io_context.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/ts/net.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/ts/netfwd.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/ts/socket.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/ts/timer.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/unyield.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/use_awaitable.hpp | 7 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/use_future.hpp | 10 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/uses_executor.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/version.hpp | 4 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/wait_traits.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/windows/basic_object_handle.hpp | 60 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/windows/basic_overlapped_handle.hpp | 103 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/windows/basic_random_access_handle.hpp | 67 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/windows/basic_stream_handle.hpp | 64 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/windows/object_handle.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/windows/overlapped_handle.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/windows/overlapped_ptr.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/windows/random_access_handle.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/windows/stream_handle.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/writable_pipe.hpp | 2 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/write.hpp | 86 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/write_at.hpp | 53 AsioHeaders-1.28.2-1/AsioHeaders/inst/include/asio/yield.hpp | 2 686 files changed, 13816 insertions(+), 5147 deletions(-)
Title: Wrapper for MUMPS Library
Description: Some basic features of 'MUMPS' (Multifrontal Massively Parallel
sparse direct Solver) are wrapped in a class whose methods can be used
for sequentially solving a sparse linear system (symmetric or not)
with one or many right hand sides (dense or sparse).
There is a possibility to do separately symbolic analysis,
LU (or LDL^t) factorization and system solving.
Third part ordering libraries are included and can be used: 'PORD', 'METIS', 'SCOTCH'.
'MUMPS' method was first described in Amestoy et al. (2001) <doi:10.1137/S0895479899358194>
and Amestoy et al. (2006) <doi:10.1016/j.parco.2005.07.004>.
Author: Serguei Sokol [aut, cre],
Emmanuel Agullo [ctb],
Patrick Amestoy [ctb, cph],
Maurice Bremond [ctb],
Alfredo Buttari [ctb],
Philippe Combes [ctb],
Marie Durand [ctb],
Aurelia Fevre [ctb],
Abdou Guermouche [ctb],
Guillaume Joslin [ctb],
Jacko Koster [c [...truncated...]
Maintainer: Serguei Sokol <sokol@insa-toulouse.fr>
Diff between rmumps versions 5.2.1-30 dated 2024-06-14 and 5.2.1-34 dated 2025-04-08
DESCRIPTION | 8 MD5 | 368 ++--- NEWS | 24 R/RcppExports.R | 202 +- cleanup | 1 man/rmumps-package.Rd | 2 src/Makevars | 2 src/Makevars.seq | 2 src/lib/MUMPS_5.2.1/PORD/include/macros.h | 28 src/lib/MUMPS_5.2.1/PORD/lib/bucket.c | 20 src/lib/MUMPS_5.2.1/PORD/lib/ddbisect.c | 40 src/lib/MUMPS_5.2.1/PORD/lib/ddcreate.c | 32 src/lib/MUMPS_5.2.1/PORD/lib/gbipart.c | 14 src/lib/MUMPS_5.2.1/PORD/lib/gbisect.c | 42 src/lib/MUMPS_5.2.1/PORD/lib/gelim.c | 104 - src/lib/MUMPS_5.2.1/PORD/lib/graph.c | 16 src/lib/MUMPS_5.2.1/PORD/lib/interface.c | 36 src/lib/MUMPS_5.2.1/PORD/lib/minpriority.c | 36 src/lib/MUMPS_5.2.1/PORD/lib/multisector.c | 14 src/lib/MUMPS_5.2.1/PORD/lib/nestdiss.c | 14 src/lib/MUMPS_5.2.1/PORD/lib/symbfac.c | 16 src/lib/MUMPS_5.2.1/PORD/lib/tree.c | 20 src/lib/MUMPS_5.2.1/libseq/mpi.f | 308 ++-- src/lib/MUMPS_5.2.1/src/ana_AMDMF.F | 15 src/lib/MUMPS_5.2.1/src/ana_orderings.F | 37 src/lib/MUMPS_5.2.1/src/ana_orderings_wrappers_m.F | 114 - src/lib/MUMPS_5.2.1/src/ana_set_ordering.F | 12 src/lib/MUMPS_5.2.1/src/countif.awk |only src/lib/MUMPS_5.2.1/src/dana_LDLT_preprocess.F | 72 src/lib/MUMPS_5.2.1/src/dana_aux.F | 482 +++--- src/lib/MUMPS_5.2.1/src/dana_aux_ELT.F | 93 - src/lib/MUMPS_5.2.1/src/dana_aux_par.F | 84 - src/lib/MUMPS_5.2.1/src/dana_dist_m.F | 14 src/lib/MUMPS_5.2.1/src/dana_driver.F | 814 +++++------ src/lib/MUMPS_5.2.1/src/dana_lr.F | 55 src/lib/MUMPS_5.2.1/src/dana_reordertree.F | 74 - src/lib/MUMPS_5.2.1/src/darrowheads.F | 24 src/lib/MUMPS_5.2.1/src/dbcast_int.F | 2 src/lib/MUMPS_5.2.1/src/dfac_asm.F | 10 src/lib/MUMPS_5.2.1/src/dfac_asm_master_ELT_m.F | 82 - src/lib/MUMPS_5.2.1/src/dfac_asm_master_m.F | 92 - src/lib/MUMPS_5.2.1/src/dfac_b.F | 24 src/lib/MUMPS_5.2.1/src/dfac_distrib_ELT.F | 10 src/lib/MUMPS_5.2.1/src/dfac_distrib_distentry.F | 44 src/lib/MUMPS_5.2.1/src/dfac_driver.F | 422 ++--- src/lib/MUMPS_5.2.1/src/dfac_front_LDLT_type1.F | 2 src/lib/MUMPS_5.2.1/src/dfac_front_LDLT_type2.F | 18 src/lib/MUMPS_5.2.1/src/dfac_front_LU_type2.F | 4 src/lib/MUMPS_5.2.1/src/dfac_front_aux.F | 22 src/lib/MUMPS_5.2.1/src/dfac_front_type2_aux.F | 2 src/lib/MUMPS_5.2.1/src/dfac_lastrtnelind.F | 10 src/lib/MUMPS_5.2.1/src/dfac_lr.F | 220 +-- src/lib/MUMPS_5.2.1/src/dfac_mem_alloc_cb.F | 15 src/lib/MUMPS_5.2.1/src/dfac_mem_compress_cb.F | 53 src/lib/MUMPS_5.2.1/src/dfac_mem_dynamic.F | 17 src/lib/MUMPS_5.2.1/src/dfac_mem_stack.F | 24 src/lib/MUMPS_5.2.1/src/dfac_par_m.F | 43 src/lib/MUMPS_5.2.1/src/dfac_process_band.F | 6 src/lib/MUMPS_5.2.1/src/dfac_process_blfac_slave.F | 8 src/lib/MUMPS_5.2.1/src/dfac_process_blocfacto.F | 34 src/lib/MUMPS_5.2.1/src/dfac_process_blocfacto_LDLT.F | 52 src/lib/MUMPS_5.2.1/src/dfac_process_contrib_type3.F | 4 src/lib/MUMPS_5.2.1/src/dfac_process_end_facto_slave.F | 4 src/lib/MUMPS_5.2.1/src/dfac_process_maprow.F | 111 - src/lib/MUMPS_5.2.1/src/dfac_process_master2.F | 3 src/lib/MUMPS_5.2.1/src/dfac_process_message.F | 24 src/lib/MUMPS_5.2.1/src/dfac_process_root2slave.F | 10 src/lib/MUMPS_5.2.1/src/dfac_process_root2son.F | 17 src/lib/MUMPS_5.2.1/src/dfac_process_rtnelind.F | 9 src/lib/MUMPS_5.2.1/src/dfac_root_parallel.F | 17 src/lib/MUMPS_5.2.1/src/dfac_scalings.F | 44 src/lib/MUMPS_5.2.1/src/dfac_sol_pool.F | 37 src/lib/MUMPS_5.2.1/src/dfac_type3_symmetrize.F | 2 src/lib/MUMPS_5.2.1/src/dlr_core.F | 112 - src/lib/MUMPS_5.2.1/src/dlr_stats.F | 94 - src/lib/MUMPS_5.2.1/src/dmumps_comm_buffer.F | 113 - src/lib/MUMPS_5.2.1/src/dmumps_driver.F | 456 +++--- src/lib/MUMPS_5.2.1/src/dmumps_f77.F | 16 src/lib/MUMPS_5.2.1/src/dmumps_load.F | 383 ++--- src/lib/MUMPS_5.2.1/src/dmumps_lr_data_m.F | 320 ++-- src/lib/MUMPS_5.2.1/src/dmumps_ooc.F | 376 ++--- src/lib/MUMPS_5.2.1/src/dmumps_ooc_buffer.F | 41 src/lib/MUMPS_5.2.1/src/dmumps_save_restore.F | 866 ++++++------ src/lib/MUMPS_5.2.1/src/dmumps_save_restore_files.F | 18 src/lib/MUMPS_5.2.1/src/dmumps_sol_es.F | 38 src/lib/MUMPS_5.2.1/src/dooc_panel_piv.F | 7 src/lib/MUMPS_5.2.1/src/drank_revealing.F | 14 src/lib/MUMPS_5.2.1/src/dsol_aux.F | 24 src/lib/MUMPS_5.2.1/src/dsol_bwd.F | 28 src/lib/MUMPS_5.2.1/src/dsol_bwd_aux.F | 46 src/lib/MUMPS_5.2.1/src/dsol_c.F | 84 - src/lib/MUMPS_5.2.1/src/dsol_driver.F | 509 +++---- src/lib/MUMPS_5.2.1/src/dsol_fwd_aux.F | 26 src/lib/MUMPS_5.2.1/src/dsol_lr.F | 20 src/lib/MUMPS_5.2.1/src/dsol_root_parallel.F | 9 src/lib/MUMPS_5.2.1/src/dtools.F | 49 src/lib/MUMPS_5.2.1/src/dtype3_root.F | 39 src/lib/MUMPS_5.2.1/src/fac_asm_build_sort_index_ELT_m.F | 33 src/lib/MUMPS_5.2.1/src/fac_asm_build_sort_index_m.F | 41 src/lib/MUMPS_5.2.1/src/fac_descband_data_m.F | 5 src/lib/MUMPS_5.2.1/src/fac_maprow_data_m.F | 8 src/lib/MUMPS_5.2.1/src/front_data_mgt_m.F | 55 src/lib/MUMPS_5.2.1/src/mumps_common.h | 3 src/lib/MUMPS_5.2.1/src/mumps_io.c | 36 src/lib/MUMPS_5.2.1/src/mumps_io_basic.c | 39 src/lib/MUMPS_5.2.1/src/mumps_io_err.c | 4 src/lib/MUMPS_5.2.1/src/mumps_io_thread.c | 9 src/lib/MUMPS_5.2.1/src/mumps_memory_mod.F | 96 - src/lib/MUMPS_5.2.1/src/mumps_metis64.c | 6 src/lib/MUMPS_5.2.1/src/mumps_ooc_common.F | 7 src/lib/MUMPS_5.2.1/src/mumps_pord.c | 9 src/lib/MUMPS_5.2.1/src/mumps_print_defined.F | 92 - src/lib/MUMPS_5.2.1/src/mumps_static_mapping.F | 478 +++--- src/lib/MUMPS_5.2.1/src/mumps_type2_blocking.F | 21 src/lib/MUMPS_5.2.1/src/mumps_version.F | 2 src/lib/MUMPS_5.2.1/src/sol_common.F | 4 src/lib/MUMPS_5.2.1/src/tools_common.F | 21 src/lib/metis-5.1.0/GKlib/GKlib.h | 4 src/lib/metis-5.1.0/GKlib/b64.c | 2 src/lib/metis-5.1.0/GKlib/csr.c | 35 src/lib/metis-5.1.0/GKlib/error.c | 18 src/lib/metis-5.1.0/GKlib/fkvkselect.c | 8 src/lib/metis-5.1.0/GKlib/fs.c | 4 src/lib/metis-5.1.0/GKlib/getopt.c | 26 src/lib/metis-5.1.0/GKlib/gk_macros.h | 47 src/lib/metis-5.1.0/GKlib/gkregex.c | 5 src/lib/metis-5.1.0/GKlib/graph.c | 42 src/lib/metis-5.1.0/GKlib/io.c | 2 src/lib/metis-5.1.0/GKlib/mcore.c | 16 src/lib/metis-5.1.0/GKlib/memory.c | 8 src/lib/metis-5.1.0/GKlib/pdb.c | 24 src/lib/metis-5.1.0/GKlib/random.c | 11 src/lib/metis-5.1.0/libmetis/balance.c | 30 src/lib/metis-5.1.0/libmetis/checkgraph.c | 18 src/lib/metis-5.1.0/libmetis/coarsen.c | 18 src/lib/metis-5.1.0/libmetis/compress.c | 6 src/lib/metis-5.1.0/libmetis/contig.c | 18 src/lib/metis-5.1.0/libmetis/debug.c | 8 src/lib/metis-5.1.0/libmetis/fm.c | 28 src/lib/metis-5.1.0/libmetis/initpart.c | 20 src/lib/metis-5.1.0/libmetis/kmetis.c | 2 src/lib/metis-5.1.0/libmetis/kwayfm.c | 56 src/lib/metis-5.1.0/libmetis/mesh.c | 2 src/lib/metis-5.1.0/libmetis/metislib.h | 2 src/lib/metis-5.1.0/libmetis/minconn.c | 28 src/lib/metis-5.1.0/libmetis/mincover.c | 6 src/lib/metis-5.1.0/libmetis/ometis.c | 6 src/lib/metis-5.1.0/libmetis/options.c | 178 +- src/lib/metis-5.1.0/libmetis/parmetis.c | 14 src/lib/metis-5.1.0/libmetis/pmetis.c | 2 src/lib/metis-5.1.0/libmetis/separator.c | 4 src/lib/metis-5.1.0/libmetis/sfm.c | 18 src/lib/metis-5.1.0/libmetis/stat.c | 16 src/lib/metis-5.1.0/libmetis/timing.c | 28 src/lib/metis-5.1.0/libmetis/wspace.c | 2 src/lib/scotch_6.0.9/include |only src/lib/scotch_6.0.9/src/Makefile | 2 src/lib/scotch_6.0.9/src/esmumps/esmumps_strats.c | 2 src/lib/scotch_6.0.9/src/libscotch/Makefile | 110 - src/lib/scotch_6.0.9/src/libscotch/common.h | 4 src/lib/scotch_6.0.9/src/libscotch/common_error.c | 20 src/lib/scotch_6.0.9/src/libscotch/common_file.c | 4 src/lib/scotch_6.0.9/src/libscotch/dgraph_io_load.c | 4 src/lib/scotch_6.0.9/src/libscotch/dummysizes.c | 30 src/lib/scotch_6.0.9/src/libscotch/graph_io.c | 2 src/lib/scotch_6.0.9/src/libscotch/last_resort/parser_ll.c | 8 src/lib/scotch_6.0.9/src/libscotch/library_dgraph_map.c | 14 src/lib/scotch_6.0.9/src/libscotch/library_dgraph_order.c | 6 src/lib/scotch_6.0.9/src/libscotch/library_errcom.c | 13 src/lib/scotch_6.0.9/src/libscotch/library_error.c | 36 src/lib/scotch_6.0.9/src/libscotch/library_error_exit.c | 41 src/lib/scotch_6.0.9/src/libscotch/library_graph_map.c | 14 src/lib/scotch_6.0.9/src/libscotch/library_graph_order.c | 6 src/lib/scotch_6.0.9/src/libscotch/library_graph_part_ovl.c | 4 src/lib/scotch_6.0.9/src/libscotch/library_mesh_order.c | 2 src/lib/scotch_6.0.9/src/libscotch/mesh_coarsen.c | 10 src/lib/scotch_6.0.9/src/libscotch/mesh_io.c | 2 src/lib/scotch_6.0.9/src/libscotch/parser_ll.c |only src/lib/scotch_6.0.9/src/libscotch/parser_ly.h |only src/lib/scotch_6.0.9/src/libscotch/parser_yy.c |only src/lib/scotch_6.0.9/src/libscotch/scotch.h |only src/lib/scotch_6.0.9/src/libscotch/scotchf.h |only src/lib/scotch_6.0.9/src/libscotch/vdgraph_separate_df.c | 2 src/lib/scotch_6.0.9/src/libscotch/vgraph_separate_vw.c | 2 src/lib/scotch_6.0.9/src/libscotch/vmesh_separate_fm.c | 12 src/lib/scotch_6.0.9/src/libscotch/wgraph_part_gg.c | 4 src/lib/scotch_6.0.9/src/libscotch/wgraph_part_gp.c | 4 src/wrap_r.c |only 188 files changed, 5477 insertions(+), 5037 deletions(-)
Title: Multivariate Inverse Gaussian Distribution
Description: Provides utilities for estimation for the multivariate inverse Gaussian distribution of Minami (2003) <doi:10.1081/STA-120025379>, including random vector generation and explicit estimators of the location vector and scale matrix. The package implements kernel density estimators discussed in Belzile, Desgagnes, Genest and Ouimet (2024) <doi:10.48550/arXiv.2209.04757> for smoothing multivariate data on half-spaces.
Author: Leo Belzile [aut, cre] ,
Frederic Ouimet [aut]
Maintainer: Leo Belzile <belzilel@gmail.com>
Diff between mig versions 1.0 dated 2024-07-14 and 2.0 dated 2025-04-08
mig-1.0/mig/man/mig_kdens_bandwidth.Rd |only mig-1.0/mig/man/tellipt_kdens.Rd |only mig-2.0/mig/DESCRIPTION | 13 mig-2.0/mig/MD5 | 56 + mig-2.0/mig/NAMESPACE | 20 mig-2.0/mig/NEWS.md |only mig-2.0/mig/R/RcppExports.R | 196 +++++ mig-2.0/mig/R/bandwidth.R | 950 ++++++++++++++++++---------- mig-2.0/mig/R/elliptical.R | 43 + mig-2.0/mig/R/mig.R | 688 +++++++++++--------- mig-2.0/mig/build/partial.rdb |binary mig-2.0/mig/build/vignette.rds |binary mig-2.0/mig/inst/doc/mig_vignette.R | 30 mig-2.0/mig/inst/doc/mig_vignette.html | 8 mig-2.0/mig/inst/tinytest/test-bandwidth.R | 78 +- mig-2.0/mig/inst/tinytest/test-loocv.R |only mig-2.0/mig/man/an.Rd |only mig-2.0/mig/man/dtellipt.Rd | 2 mig-2.0/mig/man/gauss_kdens_arma.Rd |only mig-2.0/mig/man/gauss_lcv.Rd |only mig-2.0/mig/man/gauss_loo.Rd |only mig-2.0/mig/man/gauss_lscv.Rd |only mig-2.0/mig/man/gauss_rlcv.Rd |only mig-2.0/mig/man/hsgauss_kdens.Rd |only mig-2.0/mig/man/kdens_bandwidth.Rd |only mig-2.0/mig/man/mig.Rd | 3 mig-2.0/mig/man/mig_lcv.Rd | 18 mig-2.0/mig/man/mig_loo.Rd |only mig-2.0/mig/man/mig_lscv.Rd |only mig-2.0/mig/man/mig_rlcv.Rd | 5 mig-2.0/mig/man/mle_truncgauss.Rd |only mig-2.0/mig/man/proj_hs.Rd |only mig-2.0/mig/man/tnorm_kdens.Rd |only mig-2.0/mig/man/tnorm_kdens_arma.Rd |only mig-2.0/mig/man/tnorm_lcv.Rd |only mig-2.0/mig/man/tnorm_loo.Rd |only mig-2.0/mig/man/tnorm_lscv.Rd |only mig-2.0/mig/man/tnorm_rlcv.Rd |only mig-2.0/mig/src/RcppExports.cpp | 234 ++++++ mig-2.0/mig/src/crossvalidation.cpp | 974 +++++++++++++++++++++-------- 40 files changed, 2347 insertions(+), 971 deletions(-)
Title: Tools for CM SAF NetCDF Data
Description: The Satellite Application Facility on Climate Monitoring (CM SAF)
is a ground segment of the European Organization for the Exploitation of
Meteorological Satellites (EUMETSAT) and one of EUMETSATs Satellite Application
Facilities. The CM SAF contributes to the sustainable monitoring of the climate
system by providing essential climate variables related to the energy and water
cycle of the atmosphere (<https://www.cmsaf.eu>). It is a joint cooperation of eight
National Meteorological and Hydrological Services.
The 'cmsafops' R-package provides a collection of R-operators for the analysis and
manipulation of CM SAF NetCDF formatted data. Other CF conform NetCDF data with time,
longitude and latitude dimension should be applicable, but there is no guarantee for
an error-free application.
CM SAF climate data records are provided for free via (<https://wui.cmsaf.eu/safira>).
Detailed information and test data are provided on the CM SAF webpage
(<http://www.cmsaf.eu/R_toolbox& [...truncated...]
Author: Steffen Kothe [aut, cre],
Danny Parsons [ctb]
Maintainer: Steffen Kothe <Steffen.Kothe@dwd.de>
Diff between cmsafops versions 1.4.0 dated 2024-04-26 and 1.4.1 dated 2025-04-08
DESCRIPTION | 8 MD5 | 1010 +++++----- NAMESPACE | 336 +-- NEWS.md | 722 +++---- R/acsaf_box_mergetime.R | 856 ++++---- R/add_grid_info.R | 210 +- R/arith_wrapper.R | 446 ++-- R/arithc_wrapper.R | 226 +- R/box_mergetime.R | 796 ++++---- R/calc_allDatesNc.R | 76 R/calc_field.R | 74 R/calc_overlapping_time.R | 328 +-- R/calc_regres_coef_a.R | 30 R/calc_regres_coef_b.R | 30 R/calc_timestepNc.R | 250 +- R/calc_timx_result.R | 122 - R/calc_trend.R | 136 - R/calc_trend_advanced.R | 254 +- R/change_att.R | 226 +- R/check.coordinate.system.R | 80 R/check_constant.R | 10 R/check_dims.R | 58 R/check_format.R | 20 R/check_infile.R | 18 R/check_infiles.R | 24 R/check_nc_version.R | 26 R/check_outfile.R | 18 R/check_overwrite.R | 14 R/check_variable.R | 10 R/cmsaf.abs.R | 302 +-- R/cmsaf.add.R | 168 - R/cmsaf.addc.R | 134 - R/cmsaf.adjust.two.files.R | 514 ++--- R/cmsaf.cat.R | 482 ++--- R/cmsaf.detrend.R | 378 +-- R/cmsaf.div.R | 168 - R/cmsaf.divc.R | 134 - R/cmsaf.mk.test.R | 406 ++-- R/cmsaf.mul.R | 168 - R/cmsaf.mulc.R | 136 - R/cmsaf.regres.R | 352 +-- R/cmsaf.stats.R | 244 +- R/cmsaf.stats.station.data.R | 428 ++-- R/cmsaf.sub.R | 166 - R/cmsaf.sub.rel.R | 294 +-- R/cmsaf.subc.R | 136 - R/cmsaf.transform.coordinate.system.R | 220 +- R/cmsafops.R | 198 +- R/constants.R | 280 +- R/correct_filename.R | 20 R/dayavg.R | 132 - R/daymax.R | 124 - R/daymean.R | 132 - R/daymin.R | 124 - R/daypctl.R | 130 - R/dayrange.R | 364 +-- R/daysd.R | 124 - R/daysum.R | 122 - R/dayvar.R | 124 - R/dayx_wrapper.R | 304 +-- R/define_dims.R | 86 R/define_vars.R | 46 R/define_vars_mk.test.R | 62 R/define_vars_trend.R | 84 R/define_vars_trend_advanced.R | 102 - R/divdpm.R | 132 - R/extract.level.R | 402 ++-- R/extract.period.R | 526 ++--- R/fld_cor_covar_wrapper.R | 286 +- R/fldcor.R | 152 - R/fldcovar.R | 152 - R/fldmax.R | 126 - R/fldmean.R | 126 - R/fldmin.R | 126 - R/fldrange.R | 128 - R/fldsd.R | 126 - R/fldsum.R | 126 - R/fldx_wrapper.R | 210 +- R/getDateID.R | 28 R/getTimeRange.R | 78 R/get_basename.R | 68 R/get_climatology.R | 58 R/get_cor_data.R | 62 R/get_cor_data_fld.R | 32 R/get_date_time.R | 68 R/get_dimensions.R | 110 - R/get_nc_version.R | 34 R/get_processing_time_string.R | 40 R/get_time.R | 198 +- R/get_time_bnds_1.R | 14 R/get_time_bnds_from_file.R | 16 R/get_time_bnds_mul.R | 28 R/get_time_bounds.R | 26 R/get_time_bounds_doy.R | 26 R/get_time_bounds_hour.R | 26 R/get_time_bounds_month.R | 26 R/get_time_bounds_run.R | 18 R/get_time_bounds_timrange.R | 54 R/get_time_bounds_year.R | 26 R/get_time_info.R | 42 R/get_var_atts.R | 36 R/get_var_from_vars.R | 26 R/get_var_from_vars_all.R | 26 R/get_var_prec.R | 16 R/gridboxmax.R | 130 - R/gridboxmean.R | 130 - R/gridboxmin.R | 130 - R/gridboxrange.R | 130 - R/gridboxsd.R | 130 - R/gridboxsum.R | 130 - R/gridboxvar.R | 130 - R/gridboxx_wrapper.R | 558 ++--- R/hourmean.R | 128 - R/hoursum.R | 128 - R/hourx_wrapper.R | 236 +- R/is_leap_year.R | 6 R/is_url.R | 4 R/levbox_mergetime.R | 186 - R/map_regular.R | 591 +++--- R/mermean.R | 126 - R/merx_wrapper.R | 218 +- R/mon.anomaly.R | 420 ++-- R/mon.anomaly.climatology.R | 360 +-- R/mon_num_above.R | 130 - R/mon_num_below.R | 130 - R/mon_num_equal.R | 130 - R/mon_num_wrapper.R | 276 +- R/monavg.R | 136 - R/mondaymean.R | 400 ++-- R/monmax.R | 124 - R/monmean.R | 136 - R/monmin.R | 124 - R/monpctl.R | 134 - R/monsd.R | 126 - R/monsum.R | 124 - R/monvar.R | 126 - R/monx_wrapper.R | 342 +-- R/muldpm.R | 130 - R/multimonmean.R | 342 +-- R/multimonsum.R | 364 +-- R/multiplelm.R | 34 R/ncinfo.R | 242 +- R/num_above.R | 134 - R/num_below.R | 134 - R/num_equal.R | 134 - R/num_wrapper.R | 182 - R/read_file.R | 164 - R/read_file_all.R | 144 - R/read_gridfile.R | 54 R/read_ncvar.R | 174 - R/redefine_grid_vars.R | 72 R/release_questions.R | 36 R/remap.R | 660 +++--- R/runmax.R | 132 - R/runmean.R | 126 - R/runmin.R | 130 - R/runrange.R | 126 - R/runsd.R | 132 - R/runsum.R | 132 - R/runx_wrapper.R | 310 +-- R/seas.anomaly.R | 464 ++-- R/seasmean.R | 128 - R/seassd.R | 128 - R/seassum.R | 128 - R/seasvar.R | 130 - R/seasx_wrapper.R | 322 +-- R/sellonlatbox.R | 446 ++-- R/selmon.R | 310 +-- R/selperiod.R | 356 +-- R/selpoint.R | 506 ++--- R/selpoint.multi.R | 800 ++++---- R/seltime.R | 310 +-- R/selyear.R | 314 +-- R/set_seasons.R | 54 R/simplelm.R | 46 R/simplelm2.R | 50 R/tim_cor_covar_wrapper.R | 352 +-- R/timavg.R | 138 - R/timcor.R | 152 - R/timcovar.R | 152 - R/timcumsum.R | 574 +++--- R/timmax.R | 124 - R/timmean.R | 126 - R/timmin.R | 124 - R/timpctl.R | 134 - R/timsd.R | 126 - R/timselmean.R | 124 - R/timselsum.R | 130 - R/timselx_wrapper.R | 238 +- R/timsum.R | 126 - R/timx_wrapper.R | 164 - R/trend.R | 296 +-- R/trend_advanced.R | 332 +-- R/wfldmean.R | 130 - R/write_output_file.R | 222 +- R/write_output_file_mk.test.R | 228 +- R/write_output_file_trend.R | 264 +- R/write_output_file_trend_advanced.R | 284 +- R/xdpm_wrapper.R | 244 +- R/ydaymax.R | 124 - R/ydaymean.R | 322 +-- R/ydaymin.R | 124 - R/ydayrange.R | 124 - R/ydaysd.R | 126 - R/ydaysum.R | 122 - R/ydayx_wrapper.R | 270 +- R/ydrunmean.R | 132 - R/ydrunsd.R | 132 - R/ydrunsum.R | 132 - R/ydrunx_wrapper.R | 98 - R/year.anomaly.R | 318 +-- R/yearmax.R | 126 - R/yearmean.R | 308 +-- R/yearmin.R | 124 - R/yearrange.R | 126 - R/yearsd.R | 126 - R/yearsum.R | 308 +-- R/yearvar.R | 124 - R/yearx_wrapper.R | 258 +- R/ymonmax.R | 126 - R/ymonmean.R | 126 - R/ymonmedian.R | 126 - R/ymonmin.R | 126 - R/ymonsd.R | 126 - R/ymonsum.R | 126 - R/ymonx_wrapper.R | 270 +- R/yseasmax.R | 126 - R/yseasmean.R | 132 - R/yseasmin.R | 126 - R/yseassd.R | 126 - R/yseasx_wrapper.R | 256 +- R/zonmean.R | 126 - R/zonsum.R | 126 - R/zonx_wrapper.R | 230 +- inst/WORDLIST | 362 +-- man/acsaf_box_mergetime.Rd | 118 - man/add_grid_info.Rd | 76 man/box_mergetime.Rd | 244 +- man/calc_allDatesNc.Rd | 32 man/calc_overlapping_time.Rd | 76 man/calc_timestepNc.Rd | 32 man/change_att.Rd | 178 - man/check.coordinate.system.Rd | 40 man/cmsaf.abs.Rd | 188 - man/cmsaf.add.Rd | 240 +- man/cmsaf.addc.Rd | 198 +- man/cmsaf.adjust.two.files.Rd | 112 - man/cmsaf.cat.Rd | 168 - man/cmsaf.detrend.Rd | 198 +- man/cmsaf.div.Rd | 240 +- man/cmsaf.divc.Rd | 198 +- man/cmsaf.mk.test.Rd | 208 +- man/cmsaf.mul.Rd | 240 +- man/cmsaf.mulc.Rd | 200 +- man/cmsaf.regres.Rd | 196 +- man/cmsaf.stats.Rd | 118 - man/cmsaf.stats.station.data.Rd | 96 - man/cmsaf.sub.Rd | 238 +- man/cmsaf.sub.rel.Rd | 110 - man/cmsaf.subc.Rd | 200 +- man/cmsaf.transform.coordinate.system.Rd | 74 man/dayavg.Rd | 206 +- man/daymax.Rd | 196 +- man/daymean.Rd | 206 +- man/daymin.Rd | 196 +- man/daypctl.Rd | 204 +- man/dayrange.Rd | 198 +- man/daysd.Rd | 196 +- man/daysum.Rd | 196 +- man/dayvar.Rd | 196 +- man/divdpm.Rd | 194 +- man/extract.level.Rd | 222 +- man/extract.period.Rd | 200 +- man/fldcor.Rd | 214 +- man/fldcovar.Rd | 214 +- man/fldmax.Rd | 180 - man/fldmean.Rd | 180 - man/fldmin.Rd | 180 - man/fldrange.Rd | 182 - man/fldsd.Rd | 180 - man/fldsum.Rd | 180 - man/get_basename.Rd | 66 man/get_date_time.Rd | 54 man/get_dimensions.Rd | 32 man/get_nc_version.Rd | 28 man/get_processing_time_string.Rd | 42 man/get_time.Rd | 52 man/get_time_info.Rd | 36 man/gridboxmax.Rd | 194 +- man/gridboxmean.Rd | 194 +- man/gridboxmin.Rd | 194 +- man/gridboxrange.Rd | 194 +- man/gridboxsd.Rd | 194 +- man/gridboxsum.Rd | 194 +- man/gridboxvar.Rd | 194 +- man/hourmean.Rd | 174 - man/hoursum.Rd | 174 - man/levbox_mergetime.Rd | 256 +- man/map_regular.Rd | 154 - man/mermean.Rd | 162 - man/mon.anomaly.Rd | 210 +- man/mon.anomaly.climatology.Rd | 84 man/mon_num_above.Rd | 216 +- man/mon_num_below.Rd | 216 +- man/mon_num_equal.Rd | 216 +- man/monavg.Rd | 220 +- man/mondaymean.Rd | 208 +- man/monmax.Rd | 208 +- man/monmean.Rd | 220 +- man/monmin.Rd | 208 +- man/monpctl.Rd | 220 +- man/monsd.Rd | 210 +- man/monsum.Rd | 208 +- man/monvar.Rd | 210 +- man/muldpm.Rd | 194 +- man/multimonmean.Rd | 222 +- man/multimonsum.Rd | 220 +- man/ncinfo.Rd | 126 - man/num_above.Rd | 206 +- man/num_below.Rd | 206 +- man/num_equal.Rd | 206 +- man/read_file.Rd | 40 man/read_ncvar.Rd | 128 - man/remap.Rd | 264 +- man/runmax.Rd | 194 +- man/runmean.Rd | 190 - man/runmin.Rd | 192 +- man/runrange.Rd | 190 - man/runsd.Rd | 194 +- man/runsum.Rd | 194 +- man/seas.anomaly.Rd | 184 - man/seasmean.Rd | 188 - man/seassd.Rd | 188 - man/seassum.Rd | 188 - man/seasvar.Rd | 188 - man/sellonlatbox.Rd | 212 +- man/selmon.Rd | 192 +- man/selperiod.Rd | 198 +- man/selpoint.Rd | 216 +- man/selpoint.multi.Rd | 254 +- man/seltime.Rd | 192 +- man/selyear.Rd | 194 +- man/timavg.Rd | 210 +- man/timcor.Rd | 214 +- man/timcovar.Rd | 214 +- man/timcumsum.Rd | 86 man/timmax.Rd | 196 +- man/timmean.Rd | 198 +- man/timmin.Rd | 196 +- man/timpctl.Rd | 208 +- man/timsd.Rd | 198 +- man/timselmean.Rd | 174 - man/timselsum.Rd | 178 - man/timsum.Rd | 198 +- man/trend.Rd | 238 +- man/trend_advanced.Rd | 258 +- man/wfldmean.Rd | 184 - man/ydaymax.Rd | 196 +- man/ydaymean.Rd | 198 +- man/ydaymin.Rd | 196 +- man/ydayrange.Rd | 196 +- man/ydaysd.Rd | 198 +- man/ydaysum.Rd | 196 +- man/ydrunmean.Rd | 194 +- man/ydrunsd.Rd | 194 +- man/ydrunsum.Rd | 194 +- man/year.anomaly.Rd | 182 - man/yearmax.Rd | 182 - man/yearmean.Rd | 182 - man/yearmin.Rd | 182 - man/yearrange.Rd | 182 - man/yearsd.Rd | 182 - man/yearsum.Rd | 182 - man/yearvar.Rd | 182 - man/ymonmax.Rd | 210 +- man/ymonmean.Rd | 210 +- man/ymonmedian.Rd | 210 +- man/ymonmin.Rd | 210 +- man/ymonsd.Rd | 210 +- man/ymonsum.Rd | 210 +- man/yseasmax.Rd | 186 - man/yseasmean.Rd | 192 +- man/yseasmin.Rd | 186 - man/yseassd.Rd | 186 - man/zonmean.Rd | 170 - man/zonsum.Rd | 170 - tests/spelling.R | 6 tests/testdata/SelpointRef_A.csv | 74 tests/testdata/SelpointRef_B.csv | 74 tests/testthat.R | 8 tests/testthat/create_testdata.R | 2964 +++++++++++++++---------------- tests/testthat/helper.R | 16 tests/testthat/test_add_grid_info.R | 1252 ++++++------- tests/testthat/test_box_mergetime.R | 2314 ++++++++++++------------ tests/testthat/test_change_att.R | 1384 +++++++------- tests/testthat/test_cmsaf.abs.R | 406 ++-- tests/testthat/test_cmsaf.add.R | 1934 ++++++++++---------- tests/testthat/test_cmsaf.addc.R | 1954 ++++++++++---------- tests/testthat/test_cmsaf.cat.R | 1562 ++++++++-------- tests/testthat/test_cmsaf.detrend.R | 394 ++-- tests/testthat/test_cmsaf.div.R | 1978 ++++++++++---------- tests/testthat/test_cmsaf.divc.R | 1808 +++++++++--------- tests/testthat/test_cmsaf.mul.R | 1944 ++++++++++---------- tests/testthat/test_cmsaf.mulc.R | 1946 ++++++++++---------- tests/testthat/test_cmsaf.regres.R | 378 +-- tests/testthat/test_cmsaf.sub.R | 1890 +++++++++---------- tests/testthat/test_cmsaf.subc.R | 1934 ++++++++++---------- tests/testthat/test_dayavg.R | 1376 +++++++------- tests/testthat/test_daymax.R | 1376 +++++++------- tests/testthat/test_daymean.R | 1376 +++++++------- tests/testthat/test_daymin.R | 1376 +++++++------- tests/testthat/test_daypctl.R | 1376 +++++++------- tests/testthat/test_dayrange.R | 1256 ++++++------- tests/testthat/test_daysd.R | 1376 +++++++------- tests/testthat/test_daysum.R | 1376 +++++++------- tests/testthat/test_dayvar.R | 1376 +++++++------- tests/testthat/test_divdpm.R | 1180 ++++++------ tests/testthat/test_extract.level.R | 2438 ++++++++++++------------- tests/testthat/test_extract.period.R | 744 +++---- tests/testthat/test_fldcor.R | 168 - tests/testthat/test_fldcovar.R | 168 - tests/testthat/test_fldmax.R | 392 ++-- tests/testthat/test_fldmean.R | 390 ++-- tests/testthat/test_fldmin.R | 390 ++-- tests/testthat/test_fldrange.R | 392 ++-- tests/testthat/test_fldsd.R | 392 ++-- tests/testthat/test_fldsum.R | 392 ++-- tests/testthat/test_gridboxmax.R | 244 +- tests/testthat/test_gridboxmean.R | 244 +- tests/testthat/test_gridboxmin.R | 244 +- tests/testthat/test_gridboxrange.R | 244 +- tests/testthat/test_gridboxsd.R | 244 +- tests/testthat/test_gridboxsum.R | 244 +- tests/testthat/test_gridboxvar.R | 244 +- tests/testthat/test_levbox_mergetime.R | 192 +- tests/testthat/test_mermean.R | 184 - tests/testthat/test_mon.anomaly.R | 226 +- tests/testthat/test_monavg.R | 422 ++-- tests/testthat/test_monmax.R | 412 ++-- tests/testthat/test_monmean.R | 410 ++-- tests/testthat/test_monmin.R | 410 ++-- tests/testthat/test_monpctl.R | 428 ++-- tests/testthat/test_monsd.R | 416 ++-- tests/testthat/test_monsum.R | 414 ++-- tests/testthat/test_monvar.R | 428 ++-- tests/testthat/test_muldpm.R | 178 - tests/testthat/test_multimonmean.R | 178 - tests/testthat/test_multimonsum.R | 180 - tests/testthat/test_runmax.R | 188 - tests/testthat/test_runmean.R | 192 +- tests/testthat/test_runmin.R | 190 - tests/testthat/test_runrange.R | 172 - tests/testthat/test_runsd.R | 188 - tests/testthat/test_runsum.R | 190 - tests/testthat/test_seasmean.R | 178 - tests/testthat/test_seassd.R | 260 +- tests/testthat/test_seassum.R | 178 - tests/testthat/test_seasvar.R | 260 +- tests/testthat/test_sellonlatbox.R | 2264 +++++++++++------------ tests/testthat/test_selmon.R | 1834 +++++++++---------- tests/testthat/test_selperiod.R | 1832 +++++++++---------- tests/testthat/test_selpoint.R | 1728 +++++++++--------- tests/testthat/test_selpoint.multi.R | 144 - tests/testthat/test_seltime.R | 1518 +++++++-------- tests/testthat/test_selyear.R | 1832 +++++++++---------- tests/testthat/test_timavg.R | 1462 +++++++-------- tests/testthat/test_timcor.R | 234 +- tests/testthat/test_timcovar.R | 232 +- tests/testthat/test_timcumsum.R | 762 +++---- tests/testthat/test_timmax.R | 1612 ++++++++-------- tests/testthat/test_timmean.R | 1462 +++++++-------- tests/testthat/test_timmin.R | 1612 ++++++++-------- tests/testthat/test_timpctl.R | 1922 ++++++++++---------- tests/testthat/test_timsd.R | 1608 ++++++++-------- tests/testthat/test_timselmean.R | 192 +- tests/testthat/test_timselsum.R | 192 +- tests/testthat/test_timsum.R | 1460 +++++++-------- tests/testthat/test_wfldmean.R | 382 +-- tests/testthat/test_ydaymax.R | 534 ++--- tests/testthat/test_ydaymean.R | 508 ++--- tests/testthat/test_ydaymin.R | 534 ++--- tests/testthat/test_ydayrange.R | 466 ++-- tests/testthat/test_ydaysd.R | 466 ++-- tests/testthat/test_ydaysum.R | 534 ++--- tests/testthat/test_ydrunmean.R | 242 +- tests/testthat/test_ydrunsd.R | 246 +- tests/testthat/test_ydrunsum.R | 238 +- tests/testthat/test_year.anomaly.R | 386 ++-- tests/testthat/test_yearmax.R | 406 ++-- tests/testthat/test_yearmean.R | 388 ++-- tests/testthat/test_yearmin.R | 406 ++-- tests/testthat/test_yearrange.R | 406 ++-- tests/testthat/test_yearsd.R | 406 ++-- tests/testthat/test_yearsum.R | 396 ++-- tests/testthat/test_yearvar.R | 406 ++-- tests/testthat/test_ymonmax.R | 886 ++++----- tests/testthat/test_ymonmean.R | 408 ++-- tests/testthat/test_ymonmin.R | 408 ++-- tests/testthat/test_ymonsd.R | 414 ++-- tests/testthat/test_ymonsum.R | 408 ++-- tests/testthat/test_yseasmax.R | 404 ++-- tests/testthat/test_yseasmean.R | 404 ++-- tests/testthat/test_yseasmin.R | 404 ++-- tests/testthat/test_yseassd.R | 408 ++-- tests/testthat/test_zonmean.R | 176 - tests/testthat/test_zonsum.R | 176 - 506 files changed, 80102 insertions(+), 80051 deletions(-)
Title: Bayesian Model Averaging for Univariate Link Latent Gaussian
Models
Description: Bayesian model averaging (BMA) algorithms for univariate link latent Gaussian models (ULLGMs). For detailed information, refer to Steel M.F.J. & Zens G. (2024) "Model Uncertainty in Latent Gaussian Models with Univariate Link Function" <doi:10.48550/arXiv.2406.17318>. The package supports various g-priors and a beta-binomial prior on the model space. It also includes auxiliary functions for visualizing and tabulating BMA results. Currently, it offers an out-of-the-box solution for model averaging of Poisson log-normal (PLN) and binomial logistic-normal (BiL) models. The codebase is designed to be easily extendable to other likelihoods, priors, and link functions.
Author: Gregor Zens [aut, cre],
Mark F.J. Steel [aut]
Maintainer: Gregor Zens <zens@iiasa.ac.at>
Diff between LatentBMA versions 0.1.1 dated 2024-07-01 and 0.1.2 dated 2025-04-08
DESCRIPTION | 6 MD5 | 10 - R/mcmc.R | 246 ++++++++++++++++++++++----------------- R/priors.R | 23 ++- R/wrapper.R | 16 ++ inst/doc/LatentBMA_Vignette.html | 132 ++++++++++---------- 6 files changed, 250 insertions(+), 183 deletions(-)
Title: Tools, Classes, and Methods for Interfacing with 'SaTScan'
Stand-Alone Software
Description: 'SaTScan'(TM) <https://www.satscan.org> is software for finding regions in
Time, Space, or Time-Space that have excess risk, based on scan statistics, and
uses Monte Carlo hypothesis testing to generate P-values for these regions. The
'rsatscan' package provides functions for writing R data frames in
'SaTScan'-readable formats, for setting 'SaTScan' parameters, for running 'SaTScan' in
the OS, and for reading the files that 'SaTScan' creates.
Author: Ken Kleinman [aut],
Scott Hostovich [cre],
Amer Moosa [ctb]
Maintainer: Scott Hostovich <HostovichS@imsweb.com>
Diff between rsatscan versions 1.0.8 dated 2024-06-26 and 1.0.9 dated 2025-04-08
DESCRIPTION | 10 +++++----- MD5 | 22 +++++++++++----------- NEWS | 8 ++++++++ R/params.R | 14 +++----------- R/satscan.R | 2 +- R/zzz.R | 20 ++++++++++++++++++-- build/vignette.rds |binary inst/doc/rsatscan.R | 2 +- inst/doc/rsatscan.Rmd | 2 +- inst/doc/rsatscan.html | 6 +++--- inst/doc/simulation.html | 4 ++-- vignettes/rsatscan.Rmd | 2 +- 12 files changed, 54 insertions(+), 38 deletions(-)
Title: Spatial Projection of Network Signals along Geodesic Paths
Description: For a given graph containing vertices, edges, and a signal associated with the vertices, the 'PathwaySpace' package performs a convolution operation, which involves a weighted combination of neighboring vertices and their associated signals. The package then uses a decay function to project these signals, creating geodesic paths on a 2D-image space. 'PathwaySpace' could have various applications, such as visualizing and analyzing network data in a graphical format that highlights the relationships and signal strengths between vertices. It can be particularly useful for understanding the influence of signals through complex networks. By combining graph theory, signal processing, and visualization, the 'PathwaySpace' package provides a novel way of representing and analyzing graph data.
Author: Victor Apolonio [ctr],
Vinicius Chagas [ctr],
Mauro Castro [aut, cre]
Maintainer: Mauro Castro <mauro.a.castro@gmail.com>
Diff between PathwaySpace versions 1.0.0 dated 2024-11-11 and 1.0.1 dated 2025-04-08
DESCRIPTION | 9 + MD5 | 32 +++--- NAMESPACE | 3 R/pspaceGenerics.R | 10 +- R/pspaceMethods.R | 70 +++++++++----- R/pspacePlots.R | 8 - R/pspaceSupplements.R | 26 ++--- build/partial.rdb |binary build/vignette.rds |binary data/PCv12_pruned_igraph.RData |binary inst/CITATION | 33 +++++- inst/doc/PathwaySpace.R | 182 +++++++++++++++++++------------------- inst/doc/PathwaySpace.Rmd | 37 +++---- inst/doc/PathwaySpace.html | 112 +++++++++++------------ man/circularProjection-methods.Rd | 16 ++- man/polarProjection-methods.Rd | 11 +- vignettes/PathwaySpace.Rmd | 37 +++---- 17 files changed, 316 insertions(+), 270 deletions(-)
Title: Mixtures of Power Exponential and Skew Power Exponential
Distributions for Use in Model-Based Clustering and
Classification
Description: Mixtures of skewed and elliptical distributions are implemented using mixtures of multivariate skew
power exponential and power exponential distributions, respectively. A generalized expectation-maximization
framework is used for parameter estimation. See citation() for how to cite.
Author: Ryan P. Browne [aut],
Utkarsh J. Dang [aut, cre],
Michael P. B. Gallaugher [ctb],
Paul D. McNicholas [aut]
Maintainer: Utkarsh J. Dang <utkarshdang@cunet.carleton.ca>
Diff between mixSPE versions 0.9.2 dated 2023-10-16 and 0.9.3 dated 2025-04-08
DESCRIPTION | 26 +++++++++++++++++++++----- MD5 | 6 +++--- NEWS | 4 ++++ man/mixSPE-package.Rd | 4 ++-- 4 files changed, 30 insertions(+), 10 deletions(-)
Title: Visualization Package for CanvasXpress in R
Description: Enables creation of visualizations using the CanvasXpress framework
in R. CanvasXpress is a standalone JavaScript library for reproducible research
with complete tracking of data and end-user modifications stored in a single
PNG image that can be played back. See <https://www.canvasxpress.org> for more
information.
Author: Isaac Neuhaus [aut],
Connie Brett [aut, cre]
Maintainer: Connie Brett <connie@aggregate-genius.com>
Diff between canvasXpress versions 1.55.9 dated 2025-03-27 and 1.56.1 dated 2025-04-08
DESCRIPTION | 6 +++--- MD5 | 18 +++++++++--------- NEWS.md | 4 ++++ R/canvasXpress.R | 1 - README.md | 4 ++-- inst/doc/additional_examples.html | 4 ++-- inst/doc/getting_started.html | 4 ++-- inst/htmlwidgets/canvasXpress.yaml | 2 +- inst/htmlwidgets/lib/canvasXpress/canvasXpress.min.js | 6 +++--- inst/ui-examples/cX-function.R.gz |binary 10 files changed, 26 insertions(+), 23 deletions(-)
Title: Highly Performant String Case Converter
Description: Provides a case conversion between common cases like CamelCase and
snake_case. Using the 'rust crate heck' <https://github.com/withoutboats/heck>
as the backend for a highly performant case conversion for 'R'.
Author: Josiah Parry [aut] ,
Dyfan Jones [cre]
Maintainer: Dyfan Jones <dyfan.r.jones@gmail.com>
Diff between heck versions 0.1.3 dated 2024-09-11 and 0.1.4 dated 2025-04-08
heck-0.1.3/heck/src/Makevars |only heck-0.1.3/heck/src/Makevars.win |only heck-0.1.4/heck/DESCRIPTION | 7 ++- heck-0.1.4/heck/MD5 | 23 ++++++------ heck-0.1.4/heck/NEWS.md | 4 ++ heck-0.1.4/heck/configure | 2 - heck-0.1.4/heck/configure.win | 2 - heck-0.1.4/heck/src/Makevars.in |only heck-0.1.4/heck/src/Makevars.win.in |only heck-0.1.4/heck/src/rust/Cargo.lock | 52 +++++++++++++++------------- heck-0.1.4/heck/src/rust/Cargo.toml | 5 ++ heck-0.1.4/heck/src/rust/vendor-config.toml | 4 ++ heck-0.1.4/heck/src/rust/vendor.tar.xz |binary heck-0.1.4/heck/tools/config.R |only heck-0.1.4/heck/tools/msrv.R | 4 +- 15 files changed, 61 insertions(+), 42 deletions(-)
Title: Seeking and Finding Clones in Copy Number and Sequencing Data
Description: Defines the classes and functions used to simulate and
to analyze data sets describing copy number variants and,
optionally, sequencing mutations in order to detect clonal subsets.
See Zucker et al. (2019) <doi:10.1093/bioinformatics/btz057>.
Author: Mark Zucker [aut],
Kevin R. Coombes [aut, cre]
Maintainer: Kevin R. Coombes <krc@silicovore.com>
Diff between CloneSeeker versions 1.0.11 dated 2022-06-30 and 1.0.13 dated 2025-04-08
DESCRIPTION | 16 - MD5 | 16 - R/sysdata.rda |binary build/vignette.rds |binary inst/doc/CloneSeeker.pdf |binary tests/test03-simulate.R | 2 tests/test03-simulate.Rout.save | 490 ++++++++++++++++++------------------ tests/test04-algorithm.R | 8 tests/test04-algorithm.Rout.save | 527 ++++++++++++++++++--------------------- 9 files changed, 526 insertions(+), 533 deletions(-)
Title: Analyzing the Lying Behavior of Cows from Accelerometer Data
Description: Assists in analyzing the lying behavior of cows from raw data
recorded with a triaxial accelerometer attached to the hind leg of a cow. Allows
the determination of common measures for lying behavior including total lying duration, the
number of lying bouts, and the mean duration of lying bouts. Further capabilities are the
description of lying laterality and the calculation of proxies for the level of physical
activity of the cow. Reference: Simmler M., Brouwers S. P. (2024) <doi:10.7717/peerj.17036>.
Author: Michael Simmler [aut, cre] ,
Stijn Pieter Brouwers [ctb]
Maintainer: Michael Simmler <michael.simmler@agroscope.admin.ch>
Diff between triact versions 0.3.0 dated 2023-05-19 and 0.3.1 dated 2025-04-08
DESCRIPTION | 18 ++-- MD5 | 32 ++++---- NEWS.md | 6 + R/000_utils.R | 60 +++++++++------ R/001_load_methods.R | 3 R/011_CRAN_fix.R | 2 build/partial.rdb |only build/vignette.rds |binary inst/CITATION | 12 ++- inst/doc/introduction.R | 2 inst/doc/introduction.Rmd | 10 +- inst/doc/introduction.html | 174 +++++++++++++++++++++------------------------ man/Triact.Rd | 28 +++---- man/bout_summary.Rd | 4 - man/cows_5hz.Rd | 6 - man/interval_summary.Rd | 4 - man/triact_options.Rd |only vignettes/introduction.Rmd | 10 +- 18 files changed, 196 insertions(+), 175 deletions(-)
More information about childeswordfreq at CRAN
Permanent link
Title: Integrating Multiple Modalities of High Throughput Assays Using
Item Response Theory
Description: Provides a systematic framework for
integrating multiple modalities of assays profiled on the same set of
samples. The goal is to identify genes that are altered in cancer
either marginally or consistently across different assays. The
heterogeneity among different platforms and different samples are
automatically adjusted so that the overall alteration magnitude can
be accurately inferred. See Tong and Coombes (2012)
<doi:10.1093/bioinformatics/bts561>.
Author: Pan Tong [aut],
Kevin R. Coombes [aut, cre]
Maintainer: Kevin R. Coombes <krc@silicovore.com>
Diff between integIRTy versions 1.0.7 dated 2022-05-03 and 1.0.8 dated 2025-04-08
DESCRIPTION | 16 ++++++++++------ MD5 | 8 ++++---- build/vignette.rds |binary data/OV.rda |binary inst/doc/integIRTy.pdf |binary 5 files changed, 14 insertions(+), 10 deletions(-)
Title: Markdown-Based Programmable Surveys Using 'Quarto' and 'shiny'
Description: Generate programmable surveys using markdown and R code chunks. Surveys
are composed of two files: a survey.qmd 'Quarto' file defining the
survey content (pages, questions, etc), and an app.R file defining a
'shiny' app with global settings (libraries, database configuration,
etc.) and server configuration options (e.g., conditional skipping /
display, etc.). Survey data collected from respondents is stored in a
'PostgreSQL' database. Features include controls for conditional skip
logic (skip to a page based on an answer to a question), conditional
display logic (display a question based on an answer to a question), a
customizable progress bar, and a wide variety of question types,
including multiple choice (single choice and multiple choices),
select, text, numeric, multiple choice buttons, text area, and dates.
Because the surveys render into a 'shiny' app, designers can also
leverage the reactive capabilities of 'shiny' to create dynamic and
interactive surveys.
Author: John Paul Helveston [aut, cre, cph]
,
Pingfan Hu [aut, cph] ,
Bogdan Bunea [aut, cph] ,
Stefan Munnes [ctb]
Maintainer: John Paul Helveston <john.helveston@gmail.com>
Diff between surveydown versions 0.9.0 dated 2025-03-18 and 0.10.1 dated 2025-04-08
surveydown-0.10.1/surveydown/DESCRIPTION | 14 surveydown-0.10.1/surveydown/MD5 | 54 surveydown-0.10.1/surveydown/NAMESPACE | 15 surveydown-0.10.1/surveydown/NEWS.md | 20 surveydown-0.10.1/surveydown/R/config.R | 150 +- surveydown-0.10.1/surveydown/R/dashboard.R | 38 surveydown-0.10.1/surveydown/R/server.R | 55 surveydown-0.10.1/surveydown/R/util.R | 653 ++++++++-- surveydown-0.10.1/surveydown/README.md | 2 surveydown-0.10.1/surveydown/inst/examples/basic_survey.qmd | 2 surveydown-0.10.1/surveydown/inst/examples/sd_close.qmd | 5 surveydown-0.10.1/surveydown/inst/examples/sd_copy_value.qmd | 3 surveydown-0.10.1/surveydown/inst/examples/sd_is_answered.qmd | 3 surveydown-0.10.1/surveydown/inst/examples/sd_next.qmd | 5 surveydown-0.10.1/surveydown/inst/examples/sd_output.qmd | 3 surveydown-0.10.1/surveydown/inst/examples/sd_redirect.qmd | 6 surveydown-0.10.1/surveydown/inst/examples/sd_show_if.qmd | 3 surveydown-0.10.1/surveydown/inst/examples/sd_skip_forward.qmd | 12 surveydown-0.10.1/surveydown/inst/examples/sd_ui.qmd | 3 surveydown-0.10.1/surveydown/inst/rstudio |only surveydown-0.10.1/surveydown/inst/template/app.R | 24 surveydown-0.10.1/surveydown/inst/template/survey.qmd | 10 surveydown-0.10.1/surveydown/man/figures/technologies.svg | 10 surveydown-0.10.1/surveydown/man/sd_add_page.Rd | 21 surveydown-0.10.1/surveydown/man/sd_add_question.Rd | 17 surveydown-0.10.1/surveydown/man/sd_create_survey.Rd | 53 surveydown-0.10.1/surveydown/man/sd_dashboard.Rd | 12 surveydown-0.10.1/surveydown/man/sd_page_gadget.Rd |only surveydown-0.10.1/surveydown/man/sd_question_gadget.Rd |only surveydown-0.9.0/surveydown/man/sd_show_password.Rd |only 30 files changed, 850 insertions(+), 343 deletions(-)
Title: Systematic Identification of Bimodally Expressed Genes Using
RNAseq Data
Description: Provides models to identify bimodally expressed genes from
RNAseq data based on the Bimodality Index. SIBERG models the RNAseq data in
the finite mixture modeling framework and incorporates mechanisms for
dealing with RNAseq normalization. Three types of mixture models are
implemented, namely, the mixture of log normal, negative binomial, or
generalized Poisson distribution. See Tong et al. (2013)
<doi:10.1093/bioinformatics/bts713>.
Author: Pan Tong [aut],
Kevin R. Coombes [aut, cre]
Maintainer: Kevin R. Coombes <krc@silicovore.com>
Diff between SIBERG versions 2.0.3 dated 2022-05-03 and 2.0.4 dated 2025-04-08
DESCRIPTION | 16 ++++++++++------ MD5 | 8 ++++---- build/vignette.rds |binary data/simDat.rda |binary inst/doc/SIBER.pdf |binary 5 files changed, 14 insertions(+), 10 deletions(-)
Title: Extending the Newman Studentized Range Statistic to
Transcriptomics
Description: Extends the classical Newman studentized range statistic
in various ways that can be applied to genome-scale transcriptomic
or other expression data.
Author: Zachary B. Abrams [aut],
Greg Gershkowitz [aut],
Anoushka Joglekar [aut],
Chao Liu [aut],
Kevin R. Coombes [aut, cre]
Maintainer: Kevin R. Coombes <krc@silicovore.com>
Diff between NewmanOmics versions 1.0.13 dated 2025-02-19 and 1.0.14 dated 2025-04-08
DESCRIPTION | 10 +++++----- MD5 | 12 ++++++------ build/vignette.rds |binary data/GSE6631.rda |binary data/LungPair.rda |binary inst/doc/newmanomics.html | 38 +++++++++++++++++++------------------- man/04-fitMix3.Rd | 4 ++-- 7 files changed, 32 insertions(+), 32 deletions(-)
Title: Using Needleman-Wunsch to Match Sample Names
Description: The Needleman-Wunsch global alignment algorithm can be
used to find approximate matches between sample names in different
data sets. See Wang et al. (2010) <doi:10.4137/CIN.S5613>.
Author: Kevin R. Coombes [aut, cre]
Maintainer: Kevin R. Coombes <krc@silicovore.com>
Diff between NameNeedle versions 1.2.7 dated 2023-08-19 and 1.2.8 dated 2025-04-08
DESCRIPTION | 14 ++++++++------ MD5 | 8 ++++---- build/vignette.rds |binary data/cellLineNames.RData |binary inst/doc/blastName.pdf |binary 5 files changed, 12 insertions(+), 10 deletions(-)
Title: Cross-Fitting for Doubly Robust Evaluation of High-Dimensional
Surrogate Markers
Description: Doubly robust methods for evaluating surrogate markers as outlined in: Agniel D, Hejblum BP, Thiebaut R & Parast L (2022).
"Doubly robust evaluation of high-dimensional surrogate markers", Biostatistics <doi:10.1093/biostatistics/kxac020>. You can use these methods to determine how much of the overall treatment effect is explained by a (possibly high-dimensional) set of surrogate markers.
Author: Denis Agniel [aut, cre],
Boris P. Hejblum [aut],
Layla Parast [aut]
Maintainer: Denis Agniel <dagniel@rand.org>
Diff between crossurr versions 1.1.1 dated 2024-06-14 and 1.1.2 dated 2025-04-08
DESCRIPTION | 15 +++++++++------ MD5 | 11 ++++++----- R/xf_surrogate.R | 2 +- README.md | 14 ++++++++++++-- man/crossurr-package.Rd | 1 + man/figures |only man/xf_surrogate.Rd | 2 +- 7 files changed, 30 insertions(+), 15 deletions(-)
Title: Variance Function Program
Description: Variance function estimation for models proposed by W. Sadler in his variance function program
('VFP', www.aacb.asn.au/AACB/Resources/Variance-Function-Program). Here, the idea is
to fit multiple variance functions to a data set and consequently assess which function reflects
the relationship 'Var ~ Mean' best. For 'in-vitro diagnostic' ('IVD') assays modeling this relationship
is of great importance when individual test-results are used for defining follow-up treatment of patients.
Author: Andre Schuetzenmeister [cre, aut],
Florian Dufey [aut],
Andrea Geistanger [ctb]
Maintainer: Andre Schuetzenmeister <andre.schuetzenmeister@roche.com>
Diff between VFP versions 1.4.3 dated 2025-01-27 and 1.4.4 dated 2025-04-08
DESCRIPTION | 10 - MD5 | 29 +-- NAMESPACE | 17 + R/fit.R | 51 +++-- R/methods.R | 241 +++++++++---------------- R/plot.R | 3 R/utils.R | 180 ++++++++++++++++-- inst/ChangeLog.txt | 17 + inst/UnitTests/data/data_2samples.Rdata |only inst/UnitTests/data/data_multiple_models.Rdata |only inst/UnitTests/runit.tests_1.R | 56 +++++ man/VFP-Package.Rd | 4 man/fit_vfp.Rd | 7 man/get_model.Rd |only man/get_mon.Rd |only man/predict_mean.Rd | 2 man/residuals.VFP.Rd |only man/signif2.Rd | 27 ++ 18 files changed, 421 insertions(+), 223 deletions(-)
Title: Toolkit for Reduced Form and Structural Smooth Transition Vector
Autoregressive Models
Description: Penalized and non-penalized maximum likelihood estimation of smooth
transition vector autoregressive models with various types of transition weight
functions, conditional distributions, and identification methods. Constrained
estimation with various types of constraints is available. Residual based
model diagnostics, forecasting, simulations, and calculation of impulse
response functions, generalized impulse response functions, and generalized
forecast error variance decompositions. See
Heather Anderson, Farshid Vahid (1998) <doi:10.1016/S0304-4076(97)00076-6>,
Helmut Lütkepohl, Aleksei Netšunajev (2017) <doi:10.1016/j.jedc.2017.09.001>,
Markku Lanne, Savi Virolainen (2025) <doi:10.48550/arXiv.2403.14216>,
Savi Virolainen (2025) <doi:10.48550/arXiv.2404.19707>.
Author: Savi Virolainen [aut, cre]
Maintainer: Savi Virolainen <savi.virolainen@helsinki.fi>
Diff between sstvars versions 1.1.5 dated 2025-04-01 and 1.1.6 dated 2025-04-08
DESCRIPTION | 6 +++--- MD5 | 22 +++++++++++----------- NEWS.md | 6 ++++++ R/MAINest.R | 8 +++++--- R/STVARconstruction.R | 15 ++++++++++++++- R/miscellaneous.R | 2 +- R/moreEst.R | 5 +++-- R/profileLogliks.R | 2 +- inst/doc/sstvars-vignette.pdf |binary man/fitSSTVAR.Rd | 3 +++ man/fitSTVAR.Rd | 3 +++ man/get_IC.Rd | 2 +- 12 files changed, 51 insertions(+), 23 deletions(-)
Title: Silly Putty Clustering
Description: Implements a simple, novel clustering algorithm based on
optimizing the silhouette width. See <doi:10.1101/2023.11.07.566055>
for details.
Author: Dwayne Tally [aut],
Kevin R. Coombes [aut, cre]
Maintainer: Kevin R. Coombes <krc@silicovore.com>
Diff between SillyPutty versions 0.4.1 dated 2024-02-08 and 0.4.2 dated 2025-04-08
DESCRIPTION | 18 +++++---- MD5 | 14 +++---- build/vignette.rds |binary data/eucdist.rda |binary inst/doc/SillyPuttyVignette.R | 8 ++-- inst/doc/SillyPuttyVignette.html | 76 ++++++++++++++++++--------------------- man/02-RandomSillyPutty.Rd | 2 - man/05-HCSP.Rd | 2 - 8 files changed, 61 insertions(+), 59 deletions(-)
Title: Using Cytogenetics Data in R
Description: Defines classes and methods to process text-based
cytogenetics using the CytoGPS web site, then import the results
into R for further analysis and graphing.
Author: Kevin R. Coombes [aut, cre],
Dwayne Tally [aut]
Maintainer: Kevin R. Coombes <krc@silicovore.com>
Diff between RCytoGPS versions 1.2.7 dated 2024-09-04 and 1.2.9 dated 2025-04-08
DESCRIPTION | 10 +++++----- MD5 | 18 +++++++++--------- R/sysdata.rda |binary build/vignette.rds |binary data/cytoData.rda |binary data/cytobandLocations.rda |binary inst/doc/Gallery.html | 37 ++++++++++++++++++------------------- inst/doc/IntroRCytoGPS.html | 25 ++++++++++++------------- man/03-CytobandData.Rd | 2 +- man/07-preclean.Rd | 2 +- 10 files changed, 46 insertions(+), 48 deletions(-)
Title: Plot Fan Plots for Cytometry Data using 'ggplot2'
Description: An implementation of Fan plots for cytometry data in 'ggplot2'.
For reference see Britton, E.; Fisher, P. & J. Whitley (1998) The Inflation Report Projections: Understanding the Fan Chart
<https://www.bankofengland.co.uk/quarterly-bulletin/1998/q1/the-inflation-report-projections-understanding-the-fan-chart>).
Author: Yann Abraham [aut, cre]
Maintainer: Yann Abraham <yann.abraham@gmail.com>
Diff between cytofan versions 0.1.0 dated 2018-07-30 and 0.1.1 dated 2025-04-08
DESCRIPTION | 9 MD5 | 36 - NAMESPACE | 16 NEWS.md | 10 R/cytofan-package.R | 15 R/do_fan.R | 60 +- R/geom_fan.R | 108 ++--- R/stat_fan.R | 72 +-- README.md | 119 +++-- build/vignette.rds |binary inst/doc/cytofan_flow_cytometry.R | 156 +++---- inst/doc/cytofan_flow_cytometry.Rmd | 282 ++++++------- inst/doc/cytofan_flow_cytometry.html | 742 ++++++++++++++++++++++++++--------- man/cytofan.Rd | 32 + man/do_fan.Rd | 68 +-- man/figures/README-example-1.png |binary man/geom_fan.Rd | 279 ++++++++----- man/ggplot2-ggproto.Rd | 20 vignettes/cytofan_flow_cytometry.Rmd | 282 ++++++------- 19 files changed, 1385 insertions(+), 921 deletions(-)
Title: Simulate Non-Proportional Hazards
Description: A toolkit for simulation studies concerning time-to-event endpoints
with non-proportional hazards. 'SimNPH' encompasses functions for simulating
time-to-event data in various scenarios, simulating different trial designs
like fixed-followup, event-driven, and group sequential designs. The package
provides functions to calculate the true values of common summary statistics
for the implemented scenarios and offers common analysis methods for
time-to-event data. Helper functions for running simulations with the
'SimDesign' package and for aggregating and presenting the results are also
included. Results of the conducted simulation study are available in the
paper: "A Comparison of Statistical Methods for Time-To-Event Analyses in
Randomized Controlled Trials Under Non-Proportional Hazards",
Klinglmüller et al. (2025) <doi:10.1002/sim.70019>.
Author: Tobias Fellinger [aut, cre] ,
Florian Klinglmueller [aut]
Maintainer: Tobias Fellinger <tobias.fellinger@ages.at>
Diff between SimNPH versions 0.5.6 dated 2025-02-20 and 0.5.7 dated 2025-04-08
DESCRIPTION | 6 +-- MD5 | 10 ++--- NEWS.md | 6 +++ inst/CITATION | 47 +++++++++++++++++++++----- man/SimNPH.Rd | 66 ++++++++++++++++++------------------- tests/testthat/test-report_plots.R | 40 +++++++++++----------- 6 files changed, 107 insertions(+), 68 deletions(-)
Title: Methods for Evaluating Principal Surrogates of Treatment
Response
Description: Contains the core methods for the evaluation of principal
surrogates in a single clinical trial. Provides a flexible interface for
defining models for the risk given treatment and the surrogate, the models
for integration over the missing counterfactual surrogate responses, and the
estimation methods. Estimated maximum likelihood and pseudo-score can be used
for estimation, and the bootstrap for inference. A variety of post-estimation
summary methods are provided, including print, summary, plot, and testing.
Author: Michael C Sachs [aut, cre],
Erin E Gabriel [aut]
Maintainer: Michael C Sachs <sachsmc@gmail.com>
Diff between pseval versions 1.3.1 dated 2019-01-28 and 1.3.3 dated 2025-04-08
DESCRIPTION | 14 MD5 | 40 NEWS | 91 - R/risk.R | 884 +++++------ README.md | 47 build/vignette.rds |binary inst/CITATION | 29 inst/doc/introduction.R | 342 ++-- inst/doc/introduction.Rmd | 968 ++++++------ inst/doc/introduction.html | 3531 +++++++++++++++++++++++++-------------------- man/calc_STG.Rd | 13 man/calc_risk.Rd | 13 man/plot.psdesign.Rd | 17 man/ps_bootstrap.Rd | 10 man/psdesign.Rd | 14 man/risk_exponential.Rd | 2 man/risk_poisson.Rd | 2 man/risk_weibull.Rd | 2 man/sp_locscale.Rd | 10 man/summarize_bs.Rd | 3 vignettes/introduction.Rmd | 968 ++++++------ 21 files changed, 3776 insertions(+), 3224 deletions(-)
Title: Gaussian Process Fitting
Description: Fits a Gaussian process model to data. Gaussian processes
are commonly used in computer experiments to fit an interpolating model.
The model is stored as an 'R6' object and can be easily updated with new
data. There are options to run in parallel, and 'Rcpp'
has been used to speed up calculations.
For more info about Gaussian process software, see Erickson et al. (2018)
<doi:10.1016/j.ejor.2017.10.002>.
Author: Collin Erickson [aut, cre]
Maintainer: Collin Erickson <collinberickson@gmail.com>
Diff between GauPro versions 0.2.14 dated 2025-03-09 and 0.2.15 dated 2025-04-08
DESCRIPTION | 6 +-- MD5 | 20 +++++----- NEWS.md | 6 +++ inst/doc/CrossValidationErrorCorrection.html | 22 +++++------ inst/doc/GauPro.html | 8 ++-- inst/doc/IntroductionToGPs.html | 4 +- inst/doc/derivatives.html | 4 +- inst/doc/surface_derivatives.html | 4 +- tests/testthat/Rplots.pdf |binary tests/testthat/test_kernel_model_and_kernels.R | 2 - tests/testthat/test_predictions.R | 50 +++++++++++++------------ 11 files changed, 67 insertions(+), 59 deletions(-)
Title: Download and Extract Data from US EPA's ECOTOX Database
Description: The US EPA ECOTOX database is a freely available database
with a treasure of aquatic and terrestrial ecotoxicological data.
As the online search interface doesn't come with an API, this
package provides the means to easily access and search the database
in R. To this end, all raw tables are downloaded from the EPA website
and stored in a local SQLite database <doi:10.1016/j.chemosphere.2024.143078>.
Author: Pepijn de Vries [aut, cre, dtc]
Maintainer: Pepijn de Vries <pepijn.devries@outlook.com>
Diff between ECOTOXr versions 1.2.0 dated 2025-03-21 and 1.2.1 dated 2025-04-08
DESCRIPTION | 6 - MD5 | 30 ++--- NEWS.md | 8 + R/process_numeric.r | 2 R/process_unit.r | 14 ++ inst/doc/ecotox-schema.R | 196 +++++++++++++++++++-------------------- inst/doc/sanitising-ecotox.Rmd | 5 inst/doc/sanitising-ecotox.html | 6 - inst/doc/searching-ecotox.R | 54 +++++----- inst/doc/searching-ecotox.Rmd | 18 +-- inst/doc/searching-ecotox.html | 62 ++++++------ tests/testthat.R | 8 - tests/testthat/test_cas.r | 1 tests/testthat/test_sanitation.r | 86 +++++++++++++++++ vignettes/sanitising-ecotox.Rmd | 5 vignettes/searching-ecotox.Rmd | 18 +-- 16 files changed, 316 insertions(+), 203 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-08-12 0.1
Title: The Weyl Algebra
Description: A suite of routines for Weyl algebras. Notation follows
Coutinho (1995, ISBN 0-521-55119-6, "A Primer of Algebraic
D-Modules"). Uses 'disordR' discipline
(Hankin 2022 <doi:10.48550/arXiv.2210.03856>). To cite
the package in publications, use Hankin
2022 <doi:10.48550/arXiv.2212.09230>.
Author: Robin K. S. Hankin [aut, cre]
Maintainer: Robin K. S. Hankin <hankin.robin@gmail.com>
Diff between weyl versions 0.0-6 dated 2025-01-30 and 0.0-7 dated 2025-04-08
DESCRIPTION | 6 +++--- MD5 | 24 ++++++++++++------------ NEWS.md | 5 +++++ R/weyl.R | 46 +++++++++++++++++++++++----------------------- R/weyl_product.R | 2 -- build/partial.rdb |binary build/vignette.rds |binary data/dot.rda |binary data/x_and_d.rda |binary inst/doc/weyl.Rmd | 36 ++++++++++++++++++------------------ inst/doc/weyl.html | 35 +++++++++++++++++------------------ man/Ops.Rd | 2 +- vignettes/weyl.Rmd | 36 ++++++++++++++++++------------------ 13 files changed, 97 insertions(+), 95 deletions(-)
Title: Shrinkage Discriminant Analysis and CAT Score Variable Selection
Description: Provides an efficient framework for
high-dimensional linear and diagonal discriminant analysis with
variable selection. The classifier is trained using James-Stein-type
shrinkage estimators and predictor variables are ranked using
correlation-adjusted t-scores (CAT scores). Variable selection error
is controlled using false non-discovery rates or higher criticism.
Author: Miika Ahdesmaki [aut],
Verena Zuber [aut],
Sebastian Gibb [aut],
Korbinian Strimmer [aut, cre]
Maintainer: Korbinian Strimmer <strimmerlab@gmail.com>
Diff between sda versions 1.3.8 dated 2021-11-21 and 1.3.9 dated 2025-04-08
DESCRIPTION | 24 ++++++++++++++++-------- MD5 | 12 ++++++------ NEWS | 22 ++++++++++++---------- R/predict.sda.R | 17 ++++++++--------- R/sda.ranking.R | 7 ++++--- man/sda.Rd | 2 +- man/sda.package.Rd | 2 +- 7 files changed, 48 insertions(+), 38 deletions(-)
Title: Fit Measure Cutoffs in SEM
Description: Calculate cutoff values for model fit measures used in structural equation modeling (SEM) by simulating and testing data sets (cf. Hu & Bentler, 1999 <doi:10.1080/10705519909540118>) with the same parameters (population model, number of observations, etc.) as the model under consideration.
Author: Bjarne Schmalbach [aut, cre] ,
Julien Patrick Irmer [aut],
Martin Schultze [aut]
Maintainer: Bjarne Schmalbach <bjarne.schmalbach@gmail.com>
Diff between ezCutoffs versions 1.0.1 dated 2019-12-04 and 1.0.2 dated 2025-04-08
ezCutoffs-1.0.1/ezCutoffs/README.md |only ezCutoffs-1.0.2/ezCutoffs/DESCRIPTION | 9 ++++----- ezCutoffs-1.0.2/ezCutoffs/MD5 | 9 ++++----- ezCutoffs-1.0.2/ezCutoffs/NEWS.md | 6 ++++++ ezCutoffs-1.0.2/ezCutoffs/R/ezCutoffs.R | 2 +- ezCutoffs-1.0.2/ezCutoffs/man/ezCutoffs.Rd | 2 +- 6 files changed, 16 insertions(+), 12 deletions(-)
Title: Clustering and Visualizing Distance Matrices
Description: Defines the classes used to explore, cluster and
visualize distance matrices, especially those arising from binary
data. See Abrams and colleagues, 2021, <doi:10.1093/bioinformatics/btab037>.
Author: Kevin R. Coombes [aut, cre],
Caitlin E. Coombes [aut]
Maintainer: Kevin R. Coombes <krc@silicovore.com>
Diff between Mercator versions 1.1.5 dated 2024-10-22 and 1.1.6 dated 2025-04-08
DESCRIPTION | 8 ++--- MD5 | 24 ++++++++-------- build/vignette.rds |binary data/CML1000.rda |binary data/CML500.rda |binary data/fakedata.rda |binary data/lgfFeatures.rda |binary inst/doc/mercVis.html | 73 ++++++++++++++++++++++++------------------------- inst/doc/mercator.html | 28 +++++++++--------- inst/doc/umap-som.html | 67 ++++++++++++++++++++++---------------------- man/Mercator-class.Rd | 12 ++++---- man/binaryDistance.Rd | 4 +- man/binaryMatrix.Rd | 10 +++--- 13 files changed, 112 insertions(+), 114 deletions(-)
Title: Utilities for Scheduling Functions to Execute Later with Event
Loops
Description: Executes arbitrary R or C functions some time after the current
time, after the R execution stack has emptied. The functions are scheduled
in an event loop.
Author: Winston Chang [aut, cre],
Joe Cheng [aut],
Charlie Gao [aut] ,
Posit Software, PBC [cph],
Marcus Geelnard [ctb, cph] ,
Evan Nemerson [ctb, cph]
Maintainer: Winston Chang <winston@posit.co>
Diff between later versions 1.4.1 dated 2024-11-27 and 1.4.2 dated 2025-04-08
DESCRIPTION | 6 ++-- MD5 | 18 ++++++------- NEWS.md | 4 +++ README.md | 2 - build/vignette.rds |binary inst/doc/later-cpp.html | 62 ++++++++++++++++++++++++------------------------ src/badthreads.h | 2 - src/fd.cpp | 2 - src/fd.h | 2 + src/timeconv.h | 22 +++-------------- 10 files changed, 56 insertions(+), 64 deletions(-)
Title: Integration to 'Apache' 'Arrow'
Description: 'Apache' 'Arrow' <https://arrow.apache.org/> is a cross-language
development platform for in-memory data. It specifies a standardized
language-independent columnar memory format for flat and hierarchical data,
organized for efficient analytic operations on modern hardware. This
package provides an interface to the 'Arrow C++' library.
Author: Neal Richardson [aut],
Ian Cook [aut],
Nic Crane [aut],
Dewey Dunnington [aut] ,
Romain Francois [aut] ,
Jonathan Keane [aut, cre],
Dragoș Moldovan-Gruenfeld [aut],
Jeroen Ooms [aut],
Jacob Wujciak-Jens [aut],
Javier Luraschi [ctb],
Karl Dunkle Werner [...truncated...]
Maintainer: Jonathan Keane <jkeane@gmail.com>
Diff between arrow versions 19.0.1 dated 2025-02-26 and 19.0.1.1 dated 2025-04-08
arrow-19.0.1.1/arrow/DESCRIPTION | 6 - arrow-19.0.1.1/arrow/MD5 | 28 +---- arrow-19.0.1.1/arrow/NEWS.md | 7 + arrow-19.0.1.1/arrow/R/dplyr-funcs-doc.R | 2 arrow-19.0.1.1/arrow/man/acero.Rd | 2 arrow-19.0.1.1/arrow/src/Makevars.in | 5 arrow-19.0.1.1/arrow/src/altrep.cpp | 52 ++++++---- arrow-19.0.1.1/arrow/src/arrow_types.h | 20 +++ arrow-19.0.1.1/arrow/src/r_to_arrow.cpp | 12 +- arrow-19.0.1.1/arrow/tests/testthat/test-altrep.R | 14 +- arrow-19.0.1.1/arrow/tools/cpp/cmake_modules/ThirdpartyToolchain.cmake | 5 arrow-19.0.1/arrow/tools/checksums |only 12 files changed, 97 insertions(+), 56 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-10-12 0.5
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-09-14 0.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-08-02 2.1
2018-05-31 2.0
2018-04-03 1.0
Title: Simplified Statistical Procedures for Social Sciences
Description: Simplifies functions assess normality for bivariate and multivariate statistical techniques. Includes functions designed to replicate plots and tables that would result from similar calls in 'SPSS', including hst(), box(), qq(), tab(), cormat(), and residplot(). Also includes simplified formulae, such as mode(), scatter(), p.corr(), ow.anova(), and rm.anova().
Author: Burrel Vann Jr [aut, cre]
Maintainer: Burrel Vann Jr <bvannjr@sdsu.edu>
Diff between vannstats versions 1.5.1.8 dated 2025-01-08 and 1.5.4.07 dated 2025-04-08
vannstats-1.5.1.8/vannstats/R/summary.chi.sq.R |only vannstats-1.5.1.8/vannstats/R/summary.ow.anova.R |only vannstats-1.5.1.8/vannstats/man/summary.chi.sq.Rd |only vannstats-1.5.1.8/vannstats/man/summary.ow.anova.Rd |only vannstats-1.5.4.07/vannstats/DESCRIPTION | 6 +-- vannstats-1.5.4.07/vannstats/MD5 | 27 +++++++++-------- vannstats-1.5.4.07/vannstats/NAMESPACE | 2 + vannstats-1.5.4.07/vannstats/R/Defendants2025.R |only vannstats-1.5.4.07/vannstats/R/UCR2015.R | 2 - vannstats-1.5.4.07/vannstats/R/chi.sq.R | 8 +++-- vannstats-1.5.4.07/vannstats/R/ow.anova.R | 7 ++-- vannstats-1.5.4.07/vannstats/R/summary.chisquare.R |only vannstats-1.5.4.07/vannstats/R/summary.oneway.R |only vannstats-1.5.4.07/vannstats/data/Defendants2025.RData |only vannstats-1.5.4.07/vannstats/man/Defendants2025.Rd |only vannstats-1.5.4.07/vannstats/man/UCR2015.Rd | 2 - vannstats-1.5.4.07/vannstats/man/chi.sq.Rd | 4 +- vannstats-1.5.4.07/vannstats/man/ow.anova.Rd | 3 + vannstats-1.5.4.07/vannstats/man/summary.chisquare.Rd |only vannstats-1.5.4.07/vannstats/man/summary.oneway.Rd |only 20 files changed, 36 insertions(+), 25 deletions(-)
Title: Evolutionary Tracks and Isochrones from Pisa Stellar Evolution
Database
Description: Manages and display stellar tracks and isochrones from
Pisa low-mass database. Includes tools for isochrones
construction and tracks interpolation.
Author: Matteo Dell'Omodarme [aut, cre],
Giada Valle [aut]
Maintainer: Matteo Dell'Omodarme <mattdell@fastmail.fm>
Diff between stellaR versions 0.3-4 dated 2022-04-11 and 0.3-6 dated 2025-04-08
DESCRIPTION | 10 ++++------ MD5 | 4 ++-- man/keypoints.Rd | 28 ++++++++++++++-------------- 3 files changed, 20 insertions(+), 22 deletions(-)
Title: Linked Micromap Plots for U. S. and Other Geographic Areas
Description: Provides the users with the ability to quickly create linked
micromap plots for a collection of geographic areas. Linked micromap
plots are visualizations of geo-referenced data that link statistical
graphics to an organized series of small maps or graphic images.
The Help description contains examples of how to use the 'micromapST'
function. Contained in this package are border group datasets to
support creating linked micromap plots for the 50 U.S. states and
District of Columbia (51 areas), the U. S. 20 Seer Registries, the
105 counties in the state of Kansas, the 62 counties of New York,
the 24 counties of Maryland, the 29 counties of Utah, the 32
administrative areas in China, the 218 administrative areas in
the UK and Ireland (for testing only), the 25 districts in the
city of Seoul South Korea, and the 52 counties on the Africa continent.
A border group dataset contains the boundaries related to the data
level areas, a second layer boundaries, a top or third layer boundary,
a pa [...truncated...]
Author: Jim Pearson [aut, cre, cph],
Dan Carr [aut, cph],
Linda Pickle [ctb, cph]
Maintainer: Jim Pearson <jbpearson353@gmail.com>
Diff between micromapST versions 3.1.0 dated 2025-02-13 and 3.1.1 dated 2025-04-08
micromapST-3.1.0/micromapST/man/PlotVis.Rd |only micromapST-3.1.0/micromapST/man/glyph-arrow.rd |only micromapST-3.1.0/micromapST/man/glyph-bar.rd |only micromapST-3.1.0/micromapST/man/glyph-boxplot.rd |only micromapST-3.1.0/micromapST/man/glyph-ctrbar.rd |only micromapST-3.1.0/micromapST/man/glyph-dot.rd |only micromapST-3.1.0/micromapST/man/glyph-dotconf.rd |only micromapST-3.1.0/micromapST/man/glyph-dotse.rd |only micromapST-3.1.0/micromapST/man/glyph-dotsignif.rd |only micromapST-3.1.0/micromapST/man/glyph-id.rd |only micromapST-3.1.0/micromapST/man/glyph-mapXXXX.rd |only micromapST-3.1.1/micromapST/DESCRIPTION | 66 micromapST-3.1.1/micromapST/MD5 | 151 - micromapST-3.1.1/micromapST/NAMESPACE | 3 micromapST-3.1.1/micromapST/NEWS | 71 micromapST-3.1.1/micromapST/R/BuildBorderGroup.r | 360 +- micromapST-3.1.1/micromapST/R/globals.r | 52 micromapST-3.1.1/micromapST/R/micromapST.r | 2500 ++++++++--------- micromapST-3.1.1/micromapST/build/vignette.rds |binary micromapST-3.1.1/micromapST/data/AfricaBG.rda |binary micromapST-3.1.1/micromapST/data/AfricaPopData.rda |binary micromapST-3.1.1/micromapST/data/ChinaBG.rda |binary micromapST-3.1.1/micromapST/data/Educ8thData.rda |binary micromapST-3.1.1/micromapST/data/KansPopInc.rda |binary micromapST-3.1.1/micromapST/data/KansasBG.rda |binary micromapST-3.1.1/micromapST/data/LOWESSData.rda |binary micromapST-3.1.1/micromapST/data/MarylandBG.rda |binary micromapST-3.1.1/micromapST/data/NewYorkBG.rda |binary micromapST-3.1.1/micromapST/data/Seer18Area.rda |binary micromapST-3.1.1/micromapST/data/SeoulPopData.rda |binary micromapST-3.1.1/micromapST/data/SeoulSKoreaBG.rda |binary micromapST-3.1.1/micromapST/data/SynTable.rda |binary micromapST-3.1.1/micromapST/data/TSdata.rda |binary micromapST-3.1.1/micromapST/data/UKIrelandBG.rda |binary micromapST-3.1.1/micromapST/data/UKIrelandPopData.rda |binary micromapST-3.1.1/micromapST/data/UKIrelandPopData2.rda |binary micromapST-3.1.1/micromapST/data/USSeerBG.rda |binary micromapST-3.1.1/micromapST/data/USStatesBG.rda |binary micromapST-3.1.1/micromapST/data/UtahBG.rda |binary micromapST-3.1.1/micromapST/data/UtahPopData.rda |binary micromapST-3.1.1/micromapST/data/cnPopData.rda |binary micromapST-3.1.1/micromapST/data/detailsVariables.rda |binary micromapST-3.1.1/micromapST/data/mdPopData.rda |binary micromapST-3.1.1/micromapST/data/nyPopData.rda |binary micromapST-3.1.1/micromapST/data/statePop2010.rda |binary micromapST-3.1.1/micromapST/data/wflung00and95.rda |binary micromapST-3.1.1/micromapST/data/wflung00and95US.rda |binary micromapST-3.1.1/micromapST/data/wflung00cnty.rda |binary micromapST-3.1.1/micromapST/data/wmlung5070.rda |binary micromapST-3.1.1/micromapST/data/wmlung5070US.rda |binary micromapST-3.1.1/micromapST/man/BuildBorderGroup.Rd | 582 ++- micromapST-3.1.1/micromapST/man/ClnStrName_MST.Rd |only micromapST-3.1.1/micromapST/man/Plot_Vis.Rd |only micromapST-3.1.1/micromapST/man/bordGrp.Rd | 24 micromapST-3.1.1/micromapST/man/figures |only micromapST-3.1.1/micromapST/man/glyph-TS.Rd | 90 micromapST-3.1.1/micromapST/man/glyph-arrow.Rd |only micromapST-3.1.1/micromapST/man/glyph-bar.Rd |only micromapST-3.1.1/micromapST/man/glyph-boxplot.Rd |only micromapST-3.1.1/micromapST/man/glyph-ctrbar.Rd |only micromapST-3.1.1/micromapST/man/glyph-dot.Rd |only micromapST-3.1.1/micromapST/man/glyph-dotconf.Rd |only micromapST-3.1.1/micromapST/man/glyph-dotse.Rd |only micromapST-3.1.1/micromapST/man/glyph-dotsignif.Rd |only micromapST-3.1.1/micromapST/man/glyph-id.Rd |only micromapST-3.1.1/micromapST/man/glyph-mapXXXX.Rd |only micromapST-3.1.1/micromapST/man/glyph-normbar.Rd | 24 micromapST-3.1.1/micromapST/man/glyph-scatdot.Rd | 156 - micromapST-3.1.1/micromapST/man/glyph-segbar.Rd | 20 micromapST-3.1.1/micromapST/man/messages-MM.Rd | 270 - micromapST-3.1.1/micromapST/man/micromapGDefaults.Rd | 156 - micromapST-3.1.1/micromapST/man/micromapST-package.Rd | 70 micromapST-3.1.1/micromapST/man/micromapST.Rd | 31 micromapST-3.1.1/micromapST/man/panelDesc.Rd | 70 74 files changed, 2726 insertions(+), 1970 deletions(-)
Title: Wrapper for the 'Official Hacker News' API
Description: Use the Official Hacker News API through R. Retrieve
posts, articles and other items in form of convenient R objects.
Author: Ryszard Szymanski [aut, cre],
Piotr Janus [aut],
Zuzanna Magierska [aut],
Rafal Muszynski [aut],
Andrzej Nowikowski [aut]
Maintainer: Ryszard Szymanski <ryszard.szymanski@outlook.com>
Diff between hackeRnews versions 0.1.0 dated 2019-12-13 and 0.2.1 dated 2025-04-08
hackeRnews-0.1.0/hackeRnews/man/add_json_extension.Rd |only hackeRnews-0.1.0/hackeRnews/man/add_path.Rd |only hackeRnews-0.1.0/hackeRnews/man/assert.Rd |only hackeRnews-0.1.0/hackeRnews/man/assert_ids.Rd |only hackeRnews-0.1.0/hackeRnews/man/assert_max_items.Rd |only hackeRnews-0.1.0/hackeRnews/man/comment_to_dataframe_row.Rd |only hackeRnews-0.1.0/hackeRnews/man/create_hn_api_response.Rd |only hackeRnews-0.1.0/hackeRnews/man/create_hn_item.Rd |only hackeRnews-0.1.0/hackeRnews/man/create_hn_user.Rd |only hackeRnews-0.1.0/hackeRnews/man/create_request_url.Rd |only hackeRnews-0.1.0/hackeRnews/man/default_if_null.Rd |only hackeRnews-0.1.0/hackeRnews/man/dot-base_url.Rd |only hackeRnews-0.1.0/hackeRnews/man/dot-send_request.Rd |only hackeRnews-0.1.0/hackeRnews/man/get_comments_with_root.Rd |only hackeRnews-0.1.0/hackeRnews/man/get_content.Rd |only hackeRnews-0.1.0/hackeRnews/man/is_hn_api_response.Rd |only hackeRnews-0.1.0/hackeRnews/man/is_hn_item.Rd |only hackeRnews-0.1.0/hackeRnews/man/is_hn_user.Rd |only hackeRnews-0.1.0/hackeRnews/man/parse_json.Rd |only hackeRnews-0.1.0/hackeRnews/man/to_datetime_origin.Rd |only hackeRnews-0.1.0/hackeRnews/man/trim_ids_list.Rd |only hackeRnews-0.1.0/hackeRnews/man/validate_hn_api_response.Rd |only hackeRnews-0.1.0/hackeRnews/man/validate_hn_item.Rd |only hackeRnews-0.1.0/hackeRnews/man/validate_hn_user.Rd |only hackeRnews-0.2.1/hackeRnews/DESCRIPTION | 18 hackeRnews-0.2.1/hackeRnews/LICENSE | 4 hackeRnews-0.2.1/hackeRnews/MD5 | 156 - hackeRnews-0.2.1/hackeRnews/NAMESPACE | 47 hackeRnews-0.2.1/hackeRnews/NEWS.md |only hackeRnews-0.2.1/hackeRnews/R/api.R | 1052 +++++----- hackeRnews-0.2.1/hackeRnews/R/assertion.R | 76 hackeRnews-0.2.1/hackeRnews/R/hn_api_response.R | 147 - hackeRnews-0.2.1/hackeRnews/R/hn_item.R | 105 hackeRnews-0.2.1/hackeRnews/R/hn_user.R | 113 - hackeRnews-0.2.1/hackeRnews/R/url_builder.R | 82 hackeRnews-0.2.1/hackeRnews/R/utils.R | 157 - hackeRnews-0.2.1/hackeRnews/README.md | 356 +-- hackeRnews-0.2.1/hackeRnews/build/vignette.rds |binary hackeRnews-0.2.1/hackeRnews/inst/WORDLIST | 27 hackeRnews-0.2.1/hackeRnews/inst/doc/hackeRnews-specs.R | 76 hackeRnews-0.2.1/hackeRnews/inst/doc/hackeRnews-specs.Rmd | 204 - hackeRnews-0.2.1/hackeRnews/inst/doc/hackeRnews-specs.html | 932 ++++---- hackeRnews-0.2.1/hackeRnews/man/get_best_stories.Rd | 71 hackeRnews-0.2.1/hackeRnews/man/get_best_stories_ids.Rd | 42 hackeRnews-0.2.1/hackeRnews/man/get_comments.Rd | 55 hackeRnews-0.2.1/hackeRnews/man/get_item_by_id.Rd | 68 hackeRnews-0.2.1/hackeRnews/man/get_items_by_ids.Rd | 59 hackeRnews-0.2.1/hackeRnews/man/get_latest_ask_stories.Rd | 71 hackeRnews-0.2.1/hackeRnews/man/get_latest_ask_stories_ids.Rd | 42 hackeRnews-0.2.1/hackeRnews/man/get_latest_job_stories.Rd | 73 hackeRnews-0.2.1/hackeRnews/man/get_latest_job_stories_ids.Rd | 42 hackeRnews-0.2.1/hackeRnews/man/get_latest_show_stories.Rd | 71 hackeRnews-0.2.1/hackeRnews/man/get_latest_show_stories_ids.Rd | 42 hackeRnews-0.2.1/hackeRnews/man/get_max_item_id.Rd | 40 hackeRnews-0.2.1/hackeRnews/man/get_new_stories.Rd | 65 hackeRnews-0.2.1/hackeRnews/man/get_new_stories_ids.Rd | 42 hackeRnews-0.2.1/hackeRnews/man/get_top_stories.Rd | 65 hackeRnews-0.2.1/hackeRnews/man/get_top_stories_ids.Rd | 44 hackeRnews-0.2.1/hackeRnews/man/get_updates.Rd | 44 hackeRnews-0.2.1/hackeRnews/man/get_user_by_username.Rd | 46 hackeRnews-0.2.1/hackeRnews/man/print.hn_item.Rd | 32 hackeRnews-0.2.1/hackeRnews/man/print.hn_user.Rd | 32 hackeRnews-0.2.1/hackeRnews/tests/spelling.R | 6 hackeRnews-0.2.1/hackeRnews/tests/testthat.R | 8 hackeRnews-0.2.1/hackeRnews/tests/testthat/_snaps |only hackeRnews-0.2.1/hackeRnews/tests/testthat/hacker-news.firebaseio.com/v0/askstories.json | 2 hackeRnews-0.2.1/hackeRnews/tests/testthat/hacker-news.firebaseio.com/v0/beststories.json | 2 hackeRnews-0.2.1/hackeRnews/tests/testthat/hacker-news.firebaseio.com/v0/item/1000.json | 22 hackeRnews-0.2.1/hackeRnews/tests/testthat/hacker-news.firebaseio.com/v0/item/2000.json | 18 hackeRnews-0.2.1/hackeRnews/tests/testthat/hacker-news.firebaseio.com/v0/item/21278790.json | 20 hackeRnews-0.2.1/hackeRnews/tests/testthat/hacker-news.firebaseio.com/v0/item/21299546.json | 22 hackeRnews-0.2.1/hackeRnews/tests/testthat/hacker-news.firebaseio.com/v0/item/21301382.json | 22 hackeRnews-0.2.1/hackeRnews/tests/testthat/hacker-news.firebaseio.com/v0/item/21301388.json | 22 hackeRnews-0.2.1/hackeRnews/tests/testthat/hacker-news.firebaseio.com/v0/item/21337844.json | 22 hackeRnews-0.2.1/hackeRnews/tests/testthat/hacker-news.firebaseio.com/v0/item/21352239.json | 28 hackeRnews-0.2.1/hackeRnews/tests/testthat/hacker-news.firebaseio.com/v0/item/21500569.json | 22 hackeRnews-0.2.1/hackeRnews/tests/testthat/hacker-news.firebaseio.com/v0/item/21500829.json | 18 hackeRnews-0.2.1/hackeRnews/tests/testthat/hacker-news.firebaseio.com/v0/item/21500985.json | 18 hackeRnews-0.2.1/hackeRnews/tests/testthat/hacker-news.firebaseio.com/v0/item/21501055.json | 14 hackeRnews-0.2.1/hackeRnews/tests/testthat/hacker-news.firebaseio.com/v0/item/3000.json | 2 hackeRnews-0.2.1/hackeRnews/tests/testthat/hacker-news.firebaseio.com/v0/item/8863.json.json | 28 hackeRnews-0.2.1/hackeRnews/tests/testthat/hacker-news.firebaseio.com/v0/item/9000.json | 2 hackeRnews-0.2.1/hackeRnews/tests/testthat/hacker-news.firebaseio.com/v0/jobstories.json | 2 hackeRnews-0.2.1/hackeRnews/tests/testthat/hacker-news.firebaseio.com/v0/maxitem.json | 2 hackeRnews-0.2.1/hackeRnews/tests/testthat/hacker-news.firebaseio.com/v0/newstories.json | 2 hackeRnews-0.2.1/hackeRnews/tests/testthat/hacker-news.firebaseio.com/v0/showstories.json | 2 hackeRnews-0.2.1/hackeRnews/tests/testthat/hacker-news.firebaseio.com/v0/topstories.json | 2 hackeRnews-0.2.1/hackeRnews/tests/testthat/hacker-news.firebaseio.com/v0/updates.json | 8 hackeRnews-0.2.1/hackeRnews/tests/testthat/hacker-news.firebaseio.com/v0/user/tomek.json | 14 hackeRnews-0.2.1/hackeRnews/tests/testthat/test-api.R | 522 +--- hackeRnews-0.2.1/hackeRnews/tests/testthat/test-url_builder.R | 40 hackeRnews-0.2.1/hackeRnews/vignettes/hackeRnews-specs.Rmd | 204 - 92 files changed, 2809 insertions(+), 2885 deletions(-)
Title: Generalized Linear Latent Variable Models
Description: Analysis of multivariate data using generalized linear latent variable models (gllvm).
Estimation is performed using either the Laplace method, variational approximations, or extended variational approximations, implemented via TMB (Kristensen et al. (2016), <doi:10.18637/jss.v070.i05>).
Author: Jenni Niku [aut, cre],
Wesley Brooks [aut],
Riki Herliansyah [aut],
Francis K.C. Hui [aut],
Pekka Korhonen [aut],
Sara Taskinen [aut],
Bert van der Veen [aut],
David I. Warton [aut]
Maintainer: Jenni Niku <jenni.m.e.niku@jyu.fi>
Diff between gllvm versions 2.0.1 dated 2025-04-01 and 2.0.2 dated 2025-04-08
DESCRIPTION | 8 - MD5 | 34 +++---- NAMESPACE | 3 NEWS.md | 13 ++ R/gllvm.R | 20 ++-- R/gllvm.TMB.R | 6 + R/gllvm.auxiliary.R | 38 ++++---- R/summary.gllvm.R | 5 + R/update.gllvm.R |only inst/doc/vignette1.html | 30 +++--- inst/doc/vignette2.html | 4 inst/doc/vignette3.html | 4 inst/doc/vignette4.html | 4 inst/doc/vignette5.html | 4 inst/doc/vignette8.html | 218 ++++++++++++++++++++++++------------------------ man/gllvm.Rd | 2 man/summary.gllvm.Rd | 5 + man/update.gllvm.Rd |only src/gllvm.cpp | 4 19 files changed, 219 insertions(+), 183 deletions(-)
Title: Post-Translational Modification Enrichment, Integration, and
Matching Analysis
Description: Functions and mined database from 'UniProt' focusing on post-translational modifications to do single enrichment analysis (SEA) and protein set enrichment analysis (PSEA). Payman Nickchi, Uladzislau Vadadokhau, Mehdi Mirzaie, Marc Baumann, Amir Ata Saei, Mohieddin Jafari (2025) <doi:10.1002/pmic.202400238>.
Author: Mohieddin Jafari [aut],
Payman Nickchi [aut, cre]
Maintainer: Payman Nickchi <payman.nickchi@gmail.com>
Diff between PEIMAN2 versions 0.1.0 dated 2022-11-21 and 1.0.0 dated 2025-04-08
PEIMAN2-0.1.0/PEIMAN2/inst/CITATION |only PEIMAN2-0.1.0/PEIMAN2/vignettes/vignettes_fig2.png |only PEIMAN2-0.1.0/PEIMAN2/vignettes/vignettes_fig3.png |only PEIMAN2-0.1.0/PEIMAN2/vignettes/vignettes_fig4.png |only PEIMAN2-1.0.0/PEIMAN2/DESCRIPTION | 16 PEIMAN2-1.0.0/PEIMAN2/MD5 | 60 PEIMAN2-1.0.0/PEIMAN2/NAMESPACE | 1 PEIMAN2-1.0.0/PEIMAN2/R/calculateES.R | 2 PEIMAN2-1.0.0/PEIMAN2/R/data.R | 2 PEIMAN2-1.0.0/PEIMAN2/R/globals.R | 4 PEIMAN2-1.0.0/PEIMAN2/R/peiman.R | 43 PEIMAN2-1.0.0/PEIMAN2/R/plotEnrichment.R | 28 PEIMAN2-1.0.0/PEIMAN2/R/plotPSEA.R | 3 PEIMAN2-1.0.0/PEIMAN2/R/psea2mass.R | 31 PEIMAN2-1.0.0/PEIMAN2/R/runEnrichment.R | 71 PEIMAN2-1.0.0/PEIMAN2/R/runPSEA.R | 87 - PEIMAN2-1.0.0/PEIMAN2/R/sea2mass.R | 6 PEIMAN2-1.0.0/PEIMAN2/R/sysdata.rda |binary PEIMAN2-1.0.0/PEIMAN2/README.md | 152 +- PEIMAN2-1.0.0/PEIMAN2/build/partial.rdb |binary PEIMAN2-1.0.0/PEIMAN2/build/vignette.rds |binary PEIMAN2-1.0.0/PEIMAN2/data/mod_ont.rda |binary PEIMAN2-1.0.0/PEIMAN2/data/ptmlist.rda |binary PEIMAN2-1.0.0/PEIMAN2/inst/doc/PEIMAN2-vignette.R | 2 PEIMAN2-1.0.0/PEIMAN2/inst/doc/PEIMAN2-vignette.Rmd | 27 PEIMAN2-1.0.0/PEIMAN2/inst/doc/PEIMAN2-vignette.html | 1406 +++++++++++-------- PEIMAN2-1.0.0/PEIMAN2/man/PEIMAN2-package.Rd | 4 PEIMAN2-1.0.0/PEIMAN2/man/exmplData2.Rd | 2 PEIMAN2-1.0.0/PEIMAN2/man/plotEnrichment.Rd | 7 PEIMAN2-1.0.0/PEIMAN2/man/psea2mass.Rd | 14 PEIMAN2-1.0.0/PEIMAN2/man/runEnrichment.Rd | 22 PEIMAN2-1.0.0/PEIMAN2/man/runPSEA.Rd | 74 - PEIMAN2-1.0.0/PEIMAN2/vignettes/PEIMAN2-vignette.Rmd | 27 33 files changed, 1208 insertions(+), 883 deletions(-)
Title: Forecasting Functions for Time Series and Linear Models
Description: Methods and tools for displaying and analysing
univariate time series forecasts including exponential smoothing
via state space models and automatic ARIMA modelling.
Author: Rob Hyndman [aut, cre, cph] ,
George Athanasopoulos [aut] ,
Christoph Bergmeir [aut] ,
Gabriel Caceres [aut] ,
Leanne Chhay [aut],
Kirill Kuroptev [aut],
Mitchell O'Hara-Wild [aut] ,
Fotios Petropoulos [aut] ,
Slava Razbash [aut],
Earo Wang [aut] ,
F [...truncated...]
Maintainer: Rob Hyndman <Rob.Hyndman@monash.edu>
Diff between forecast versions 8.23.0 dated 2024-06-19 and 8.24.0 dated 2025-04-08
DESCRIPTION | 8 ++++---- MD5 | 40 ++++++++++++++++++++-------------------- NEWS.md | 4 ++++ R/HoltWintersNew.R | 7 +++++++ R/arima.R | 18 ++++++++++++++---- R/errors.R | 4 +++- R/ets.R | 5 +++++ R/forecast2.R | 19 ++++++++++++++----- R/ggplot.R | 22 +++++++++++----------- R/naive.R | 18 ++++++++++++++---- R/season.R | 9 +++++---- README.md | 46 +++++++++++++++++++++++----------------------- build/vignette.rds |binary inst/doc/JSS2008.R | 10 +++++----- inst/doc/JSS2008.pdf |binary man/Arima.Rd | 19 ++++++++++++++++--- man/BoxCox.Rd | 9 ++++++--- man/accuracy.default.Rd | 4 +++- man/ma.Rd | 9 +++++---- man/meanf.Rd | 10 ++++++++-- man/naive.Rd | 18 ++++++++++++++---- 21 files changed, 181 insertions(+), 98 deletions(-)
Title: The Fill-Mask Association Test
Description: The Fill-Mask Association Test ('FMAT')
<doi:10.1037/pspa0000396>
is an integrative and probability-based method using
Masked Language Models to measure conceptual associations
(e.g., attitudes, biases, stereotypes, social norms, cultural values)
as propositions in natural language.
Supported language models include 'BERT'
<doi:10.48550/arXiv.1810.04805> and its variants available at 'Hugging Face'
<https://huggingface.co/models?pipeline_tag=fill-mask>.
Methodological references and installation guidance are provided at
<https://psychbruce.github.io/FMAT/>.
Author: Han-Wu-Shuang Bao [aut, cre]
Maintainer: Han-Wu-Shuang Bao <baohws@foxmail.com>
Diff between FMAT versions 2025.3 dated 2025-03-19 and 2025.4 dated 2025-04-08
FMAT-2025.3/FMAT/man/FMAT_load.Rd |only FMAT-2025.4/FMAT/DESCRIPTION | 8 FMAT-2025.4/FMAT/MD5 | 27 - FMAT-2025.4/FMAT/NAMESPACE | 4 FMAT-2025.4/FMAT/NEWS.md | 24 + FMAT-2025.4/FMAT/R/FMAT.R | 639 ++++++++++++++++++-------------- FMAT-2025.4/FMAT/README.md | 19 FMAT-2025.4/FMAT/man/BERT_download.Rd | 13 FMAT-2025.4/FMAT/man/BERT_info.Rd | 10 FMAT-2025.4/FMAT/man/BERT_info_date.Rd | 10 FMAT-2025.4/FMAT/man/BERT_remove.Rd |only FMAT-2025.4/FMAT/man/BERT_vocab.Rd | 21 - FMAT-2025.4/FMAT/man/FMAT_query.Rd | 2 FMAT-2025.4/FMAT/man/FMAT_query_bind.Rd | 2 FMAT-2025.4/FMAT/man/FMAT_run.Rd | 44 +- FMAT-2025.4/FMAT/man/fill_mask.Rd |only 16 files changed, 484 insertions(+), 339 deletions(-)
Title: Simultaneous Multi-Bias Adjustment
Description: Quantify the causal effect of a binary exposure on a binary
outcome with adjustment for multiple biases. The functions can
simultaneously adjust for any combination of uncontrolled confounding,
exposure/outcome misclassification, and selection bias.
The underlying method generalizes the concept of combining inverse
probability of selection weighting with predictive value weighting.
Simultaneous multi-bias analysis can be used to enhance the validity
and transparency of real-world evidence obtained from observational,
longitudinal studies. Based on the work from Paul Brendel, Aracelis Torres,
and Onyebuchi Arah (2023) <doi:10.1093/ije/dyad001>.
Author: Paul Brendel [aut, cre, cph]
Maintainer: Paul Brendel <pcbrendel@gmail.com>
Diff between multibias versions 1.6.3 dated 2025-02-23 and 1.7 dated 2025-04-08
multibias-1.6.3/multibias/R/adust_om_sel.R |only multibias-1.6.3/multibias/R/data_other.R |only multibias-1.6.3/multibias/data/evans.rda |only multibias-1.6.3/multibias/man/adjust_em.Rd |only multibias-1.6.3/multibias/man/adjust_em_om.Rd |only multibias-1.6.3/multibias/man/adjust_em_sel.Rd |only multibias-1.6.3/multibias/man/adjust_emc.Rd |only multibias-1.6.3/multibias/man/adjust_emc_omc.Rd |only multibias-1.6.3/multibias/man/adjust_emc_sel.Rd |only multibias-1.6.3/multibias/man/adjust_om.Rd |only multibias-1.6.3/multibias/man/adjust_om_sel.Rd |only multibias-1.6.3/multibias/man/adjust_omc.Rd |only multibias-1.6.3/multibias/man/adjust_omc_sel.Rd |only multibias-1.6.3/multibias/man/adjust_sel.Rd |only multibias-1.6.3/multibias/man/adjust_uc.Rd |only multibias-1.6.3/multibias/man/adjust_uc_em.Rd |only multibias-1.6.3/multibias/man/adjust_uc_em_sel.Rd |only multibias-1.6.3/multibias/man/adjust_uc_emc.Rd |only multibias-1.6.3/multibias/man/adjust_uc_emc_sel.Rd |only multibias-1.6.3/multibias/man/adjust_uc_om.Rd |only multibias-1.6.3/multibias/man/adjust_uc_om_sel.Rd |only multibias-1.6.3/multibias/man/adjust_uc_omc.Rd |only multibias-1.6.3/multibias/man/adjust_uc_omc_sel.Rd |only multibias-1.6.3/multibias/man/adjust_uc_sel.Rd |only multibias-1.6.3/multibias/man/evans.Rd |only multibias-1.7/multibias/DESCRIPTION | 6 multibias-1.7/multibias/MD5 | 115 - multibias-1.7/multibias/NAMESPACE | 24 multibias-1.7/multibias/NEWS.md | 13 multibias-1.7/multibias/R/adjust_em.R | 122 -- multibias-1.7/multibias/R/adjust_em_om.R | 232 --- multibias-1.7/multibias/R/adjust_em_sel.R | 168 -- multibias-1.7/multibias/R/adjust_om.R | 120 - multibias-1.7/multibias/R/adjust_om_sel.R |only multibias-1.7/multibias/R/adjust_sel.R | 100 - multibias-1.7/multibias/R/adjust_uc.R | 102 - multibias-1.7/multibias/R/adjust_uc_em.R | 237 --- multibias-1.7/multibias/R/adjust_uc_em_sel.R | 279 ---- multibias-1.7/multibias/R/adjust_uc_om.R | 241 --- multibias-1.7/multibias/R/adjust_uc_om_sel.R | 283 ---- multibias-1.7/multibias/R/adjust_uc_sel.R | 136 -- multibias-1.7/multibias/R/bias_params.R |only multibias-1.7/multibias/R/causal_data.R | 43 multibias-1.7/multibias/R/multibias_adjust.R |only multibias-1.7/multibias/README.md | 82 - multibias-1.7/multibias/inst/doc/evans_example.R | 8 multibias-1.7/multibias/inst/doc/evans_example.Rmd | 10 multibias-1.7/multibias/inst/doc/evans_example.html | 59 multibias-1.7/multibias/inst/doc/multibias.R | 19 multibias-1.7/multibias/inst/doc/multibias.Rmd | 33 multibias-1.7/multibias/inst/doc/multibias.html | 103 - multibias-1.7/multibias/inst/doc/nhanes_example.R | 170 +- multibias-1.7/multibias/inst/doc/nhanes_example.Rmd | 280 +++- multibias-1.7/multibias/inst/doc/nhanes_example.html | 607 +++++----- multibias-1.7/multibias/man/bias_params.Rd |only multibias-1.7/multibias/man/data_observed.Rd | 11 multibias-1.7/multibias/man/data_validation.Rd | 7 multibias-1.7/multibias/man/multibias_adjust.Rd |only multibias-1.7/multibias/tests/testthat/test-adjust_em.R | 173 -- multibias-1.7/multibias/tests/testthat/test-adjust_em_om.R | 395 ------ multibias-1.7/multibias/tests/testthat/test-adjust_em_sel.R | 239 --- multibias-1.7/multibias/tests/testthat/test-adjust_om.R | 169 -- multibias-1.7/multibias/tests/testthat/test-adjust_om_sel.R | 241 --- multibias-1.7/multibias/tests/testthat/test-adjust_sel.R | 145 -- multibias-1.7/multibias/tests/testthat/test-adjust_uc.R | 164 -- multibias-1.7/multibias/tests/testthat/test-adjust_uc_em.R | 392 ------ multibias-1.7/multibias/tests/testthat/test-adjust_uc_em_sel.R | 507 -------- multibias-1.7/multibias/tests/testthat/test-adjust_uc_om.R | 361 ----- multibias-1.7/multibias/tests/testthat/test-adjust_uc_om_sel.R | 509 -------- multibias-1.7/multibias/tests/testthat/test-adjust_uc_sel.R | 233 --- multibias-1.7/multibias/vignettes/evans.csv |only multibias-1.7/multibias/vignettes/evans_example.Rmd | 10 multibias-1.7/multibias/vignettes/multibias.Rmd | 33 multibias-1.7/multibias/vignettes/nhanes_example.Rmd | 280 +++- 74 files changed, 1899 insertions(+), 5562 deletions(-)
Title: A Lightweight Version of R Markdown
Description: Render R Markdown to Markdown (without using 'knitr'), and Markdown
to lightweight HTML or 'LaTeX' documents with the 'commonmark' package (instead
of 'Pandoc'). Some missing Markdown features in 'commonmark' are also
supported, such as raw HTML or 'LaTeX' blocks, 'LaTeX' math, superscripts,
subscripts, footnotes, element attributes, and appendices,
but not all 'Pandoc' Markdown features are (or will be) supported. With
additional JavaScript and CSS, you can also create HTML slides and articles.
This package can be viewed as a trimmed-down version of R Markdown and
'knitr'. It does not aim at rich Markdown features or a large variety of
output formats (the primary formats are HTML and 'LaTeX'). Book and website
projects of multiple input documents are also supported.
Author: Yihui Xie [aut, cre] ,
Tim Taylor [ctb]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between litedown versions 0.6 dated 2025-02-27 and 0.7 dated 2025-04-08
litedown-0.6/litedown/inst/doc/markdown-examples.Rmd |only litedown-0.6/litedown/inst/doc/markdown-examples.html |only litedown-0.6/litedown/inst/doc/markdown-output.R |only litedown-0.6/litedown/inst/doc/markdown-output.Rmd |only litedown-0.6/litedown/inst/doc/markdown-output.html |only litedown-0.6/litedown/inst/examples |only litedown-0.6/litedown/tests/tests.R |only litedown-0.6/litedown/tests/tests.Rout.save |only litedown-0.6/litedown/vignettes/markdown-examples.Rmd |only litedown-0.6/litedown/vignettes/markdown-output.Rmd |only litedown-0.7/litedown/DESCRIPTION | 8 - litedown-0.7/litedown/MD5 | 32 ++---- litedown-0.7/litedown/NEWS.md | 14 ++ litedown-0.7/litedown/R/fuse.R | 32 +++++- litedown-0.7/litedown/R/mark.R | 24 ++--- litedown-0.7/litedown/R/package.R | 26 ++++- litedown-0.7/litedown/R/utils.R | 14 +- litedown-0.7/litedown/build/vignette.rds |binary litedown-0.7/litedown/inst/doc/slides.html | 26 ++--- litedown-0.7/litedown/inst/resources/default.css | 2 litedown-0.7/litedown/man/markdown_options.Rd | 85 ------------------ litedown-0.7/litedown/tests/examples.R | 10 -- 22 files changed, 112 insertions(+), 161 deletions(-)
Title: Fit Growth Curves to Fish Data
Description: Fit growth models to otoliths and/or tagging data, using the 'RTMB'
package and maximum likelihood. The otoliths (or similar measurements of age)
provide direct observed coordinates of age and length. The tagging data
provide information about the observed length at release and length at
recapture at a later time, where the age at release is unknown and estimated
as a vector of parameters. The growth models provided by this package can be
fitted to otoliths only, tagging data only, or a combination of the two.
Growth variability can be modelled as constant or increasing with length.
Author: Arni Magnusson [aut, cre],
Mark Maunder [aut]
Maintainer: Arni Magnusson <thisisarni@gmail.com>
Diff between fishgrowth versions 1.0.1 dated 2025-02-18 and 1.0.2 dated 2025-04-08
DESCRIPTION | 8 ++++---- MD5 | 42 +++++++++++++++++++++--------------------- NEWS.md | 9 +++++++++ R/fishgrowth-package.R | 35 +++++++++++++++++++++++++++++++++++ R/gcm.R | 10 +++++++--- R/gompertz.R | 7 +++++-- R/gompertzo.R | 7 +++++-- R/richards.R | 6 +++++- R/richardso.R | 6 +++++- R/schnute3.R | 7 +++++-- R/vonbert.R | 5 ++++- R/vonberto.R | 5 ++++- build/partial.rdb |binary man/fishgrowth-package.Rd | 35 +++++++++++++++++++++++++++++++++++ man/gcm.Rd | 10 +++++++--- man/gompertz.Rd | 7 +++++-- man/gompertzo.Rd | 7 +++++-- man/richards.Rd | 6 +++++- man/richardso.Rd | 6 +++++- man/schnute3.Rd | 7 +++++-- man/vonbert.Rd | 5 ++++- man/vonberto.Rd | 5 ++++- 22 files changed, 184 insertions(+), 51 deletions(-)