Title: Estimate Size at Sexual Maturity
Description: Estimate morphometric and gonadal size at sexual maturity for organisms, usually fish and invertebrates. It includes methods for classification based on relative growth (using principal components analysis, hierarchical clustering, discriminant analysis), logistic regression (Frequentist or Bayes), parameters estimation and some basic plots.
Author: Josymar Torrejon-Magallanes [cre, aut]
Maintainer: Josymar Torrejon-Magallanes <ejosymart@gmail.com>
Diff between sizeMat versions 1.1.1 dated 2020-04-14 and 1.1.2 dated 2020-06-03
DESCRIPTION | 10 +- MD5 | 48 ++++++------- NAMESPACE | 62 ++++++++--------- NEWS.md | 6 + R/data.R | 2 R/gonadMat-main.R | 7 - R/morphMat-main.R | 57 +++++++--------- build/vignette.rds |binary inst/doc/sizeMat.R | 4 + inst/doc/sizeMat.Rmd | 22 ++++-- inst/doc/sizeMat.html | 49 ++++++++----- man/Crab-data.Rd | 78 +++++++++++----------- man/Fish-maturity.Rd | 40 +++++------ man/classify_mature.Rd | 114 ++++++++++++++++---------------- man/gonad_mature.Rd | 172 ++++++++++++++++++++++++------------------------- man/morph_mature.Rd | 126 +++++++++++++++++------------------ man/nagelkerkeR2.Rd | 56 +++++++-------- man/plot.classify.Rd | 126 +++++++++++++++++------------------ man/plot.gonadMat.Rd | 112 +++++++++++++++---------------- man/plot.morphMat.Rd | 116 ++++++++++++++++----------------- man/print.classify.Rd | 56 +++++++-------- man/print.gonadMat.Rd | 56 +++++++-------- man/print.morphMat.Rd | 60 ++++++++--------- man/sizeMat-package.Rd | 156 ++++++++++++++++++++++---------------------- vignettes/sizeMat.Rmd | 22 ++++-- 25 files changed, 792 insertions(+), 765 deletions(-)
Title: Infer Geographic Origin from Isotopic Data
Description: Routines for re-scaling isotope maps using known-origin tissue isotope data, assigning origin of unknown samples, and summarizing and assessing assignment results. Methods are adapted from Wunder (2010, in ISBN:9789048133536) and Vander Zanden, H. B. et al. (2014) <doi:10.1111/2041-210X.12229> as described in Ma, C. et al. (2020) <doi:10.1111/2041-210X.13426>.
Author: Chao Ma, Gabe Bowen
Maintainer: Gabe Bowen <gabe.bowen@utah.edu>
Diff between assignR versions 1.2.0 dated 2020-04-21 and 1.2.1 dated 2020-06-03
DESCRIPTION | 8 MD5 | 45 +-- NAMESPACE | 4 NEWS.md | 5 R/QA.R | 46 ++- R/calRaster.R | 4 R/plot.QA.R | 106 +++++--- R/subOrigData.R | 9 R/sysdata.rda |binary data/d18o_world.rda |binary data/d2h_world.rda |binary data/knownOrig.rda |binary data/naMap.rda |binary data/states.rda |binary inst/CITATION |only inst/doc/assignR.R | 9 inst/doc/assignR.Rmd | 11 inst/doc/assignR.html | 492 +++++++++++++++++++++++++++++++++++------ man/QA.rd | 12 - man/plot.QA.Rd | 10 tests/testthat/test_QA.R | 77 +++--- tests/testthat/test_pdRaster.R | 4 tests/testthat/test_plot.QA.R | 8 vignettes/assignR.Rmd | 11 24 files changed, 637 insertions(+), 224 deletions(-)
Title: Psychometric Functions from the Waller Lab
Description: Computes fungible coefficients and Monte Carlo data. Underlying theory for these functions is described in the following publications:
Waller, N. (2008). Fungible Weights in Multiple Regression. Psychometrika, 73(4), 691-703, <DOI:10.1007/s11336-008-9066-z>.
Waller, N. & Jones, J. (2009). Locating the Extrema of Fungible Regression Weights.
Psychometrika, 74(4), 589-602, <DOI:10.1007/s11336-008-9087-7>.
Waller, N. G. (2016). Fungible Correlation Matrices:
A Method for Generating Nonsingular, Singular, and Improper Correlation Matrices for
Monte Carlo Research. Multivariate Behavioral Research, 51(4), 554-568, <DOI:10.1080/00273171.2016.1178566>.
Jones, J. A. & Waller, N. G. (2015). The normal-theory and asymptotic distribution-free (ADF)
covariance matrix of standardized regression coefficients: theoretical extensions
and finite sample behavior. Psychometrika, 80, 365-378, <DOI:10.1007/s11336-013-9380-y>.
Waller, N. G. (2018). Direct Schmid-Leiman transformations and rank-deficient loadings matrices. Psychometrika, 83, 858-870. <DOI:10.1007/s11336-017-9599-0>.
Author: Niels Waller [aut, cre],
Jeff Jones [ctb],
Casey Giordano [ctb]
Maintainer: Niels Waller <nwaller@umn.edu>
Diff between fungible versions 1.95.2 dated 2020-01-20 and 1.96.3 dated 2020-06-03
DESCRIPTION | 10 - MD5 | 83 +++++------ NAMESPACE | 2 R/ACL.R |only R/faEKC.R | 2 R/faIB.R | 51 +------ R/faMB.R | 10 + R/faMain.R | 6 R/kurt.R | 3 R/monte.R | 8 - R/monte1.R | 8 - R/simFA.R | 360 ++++++++++++++++++++++++++++++++++++++++++++------ R/smoothAPA.R | 2 R/summary.faMain.R | 4 R/tetcor.R | 17 ++ data/ACL.rda |only inst/CITATION | 4 man/ACL.Rd |only man/AmzBoxes.Rd | 6 man/BadRBY.Rd | 4 man/BadRJN.Rd | 4 man/BadRKtB.Rd | 4 man/BadRLG.Rd | 4 man/BadRRM.Rd | 4 man/Boruch70.Rd | 4 man/Box20.Rd | 6 man/Box26.Rd | 6 man/HS9Var.Rd | 6 man/HW.Rd | 6 man/Jackson67.Rd | 4 man/Malmi79.Rd | 4 man/Thurstone41.Rd | 4 man/ThurstoneBox20.Rd | 6 man/ThurstoneBox26.Rd | 6 man/faEKC.Rd | 4 man/faIB.Rd | 15 +- man/faMB.Rd | 6 man/kurt.Rd | 3 man/monte.Rd | 7 man/monte1.Rd | 5 man/simFA.Rd | 81 ++++++++++- man/smoothAPA.Rd | 2 man/summary.faMain.Rd | 1 man/tetcor.Rd | 8 + 44 files changed, 600 insertions(+), 180 deletions(-)
Title: Guidelines for the use of Remote Sensing in Movement Ecology
Description: Tools for the guided selection of satellite data and environmental predictors, the combination of remote sensing and animal movement data and the mapping of resource suitability. Based on the paper by Remelgado et al. (2015) <doi:10.1111/2041-210X.13199>.
Author: Ruben Remelgado [aut, cre]
Maintainer: Ruben Remelgado <remelgado.ruben@gmail.com>
Diff between rsMove versions 0.2.7 dated 2018-12-11 and 0.2.8 dated 2020-06-03
DESCRIPTION | 13 - MD5 | 88 +++---- R/backSample.R | 1 R/dataQuery.R | 8 R/hotMoveStats.R | 1 R/imgInt.R | 4 R/labelSample.R | 1 R/moveCloud.R | 4 R/moveReduce.R | 9 R/moveSeg.R | 1 R/predictResources.R | 1 R/rsComposite.R | 2 R/rsMove.R | 1 R/sampleMove.R | 1 R/spaceDir.R | 3 R/specVar.R | 3 R/tMoveRes.R | 25 +- R/timeDir.R | 7 README.md | 6 build/vignette.rds |binary data/shortMove.RData |binary inst/doc/resource_suitability.R | 16 - inst/doc/resource_suitability.html | 425 ++++++++++--------------------------- inst/extdata/2013-07-16_ndvi.tif |binary inst/extdata/2013-08-01_ndvi.tif |binary inst/extdata/2013-08-17_ndvi.tif |binary inst/extdata/landCover.tif |binary inst/extdata/probabilities.tif |binary man/backSample.Rd | 3 man/dataQuery.Rd | 11 man/imgInt.Rd | 13 - man/labelSample.Rd | 3 man/longMove.Rd | 4 man/moveCloud.Rd | 5 man/moveSeg.Rd | 12 - man/plotMove.Rd | 10 man/predictResources.Rd | 3 man/rsComposite.Rd | 9 man/rsMove.Rd | 3 man/sampleMove.Rd | 9 man/shortMove.Rd | 4 man/spaceDir.Rd | 14 - man/specVar.Rd | 3 man/tMoveRes.Rd | 6 man/timeDir.Rd | 11 45 files changed, 315 insertions(+), 428 deletions(-)
Title: Visualizing and Analyzing Animal Track Data
Description: Contains functions to access movement data stored in 'movebank.org'
as well as tools to visualize and statistically analyze animal movement data,
among others functions to calculate dynamic Brownian Bridge Movement Models.
Move helps addressing movement ecology questions.
Author: Bart Kranstauber [aut, cre],
Marco Smolla [aut],
Anne K Scharf [aut]
Maintainer: Bart Kranstauber <b.kranstauber@uva.nl>
Diff between move versions 3.3.0 dated 2020-03-19 and 4.0.0 dated 2020-06-03
ChangeLog | 4 DESCRIPTION | 8 MD5 | 52 - R/WebImport.R | 4 R/getDataRepositoryData.R | 2 R/move.R | 12 R/move2ade.R | 52 - R/spTransform.R | 8 build/vignette.rds |binary data/dbbmmstack.RData |binary data/fishers.RData |binary data/leroy.RData |binary data/leroydbbmm.RData |binary data/leroydbgb.RData |binary inst/doc/browseMovebank.html | 382 ++++++++--- inst/doc/move.R | 9 inst/doc/move.Rmd | 10 inst/doc/move.html | 981 ++++++++++++++++++------------ inst/extdata/createsRDataFile.R | 2 man/brownian.bridge.dyn.Rd | 5 man/move.Rd | 5 man/moveStack.Rd | 10 tests/testthat/test.brownian.bridge.dyn.R | 3 tests/testthat/test.move.R | 10 tests/testthat/test.smallFunctions.R | 4 tests/testthat/test.spTransform.R | 9 vignettes/move.Rmd | 10 27 files changed, 1012 insertions(+), 570 deletions(-)
Title: Working with Files from 'LexisNexis'
Description: My PhD supervisor once told me that everyone doing newspaper
analysis starts by writing code to read in files from the 'LexisNexis' newspaper
archive (retrieved e.g., from <http://www.nexis.com/> or any of the partner
sites). However, while this is a nice exercise I do recommend, not everyone has
the time. This package takes files downloaded from the newspaper archive of
'LexisNexis', reads them into R and offers functions for further processing.
Author: Johannes Gruber [aut, cre]
Maintainer: Johannes Gruber <j.gruber.1@research.gla.ac.uk>
Diff between LexisNexisTools versions 0.3.0 dated 2020-01-09 and 0.3.1 dated 2020-06-03
DESCRIPTION | 12 - MD5 | 34 ++-- NAMESPACE | 2 NEWS.md | 4 R/LexisNexisTools.R | 262 ++++--------------------------- build/vignette.rds |binary inst/CITATION | 2 inst/WORDLIST | 1 inst/doc/demo.html | 304 +++++++++++++++++++------------------ man/lnt_asDate.Rd | 4 man/lnt_convert.Rd | 2 man/lnt_read.Rd | 4 tests/testthat/test-internal.R | 2 tests/testthat/test-lnt_convert.R | 6 tests/testthat/test-lnt_read.R | 13 + tests/testthat/test-lnt_read_uni.R | 15 + tests/testthat/test-lnt_rename.R | 4 tests/testthat/test-lnt_sample.R | 21 +- 18 files changed, 271 insertions(+), 421 deletions(-)
More information about LexisNexisTools at CRAN
Permanent link
Title: Tools for Working with JavaScript in R
Description: A set of utilities for working with JavaScript syntax in R.
Includes tools to parse, tokenize, compile, validate, reformat, optimize
and analyze JavaScript code.
Author: Jeroen Ooms [aut, cre] (<https://orcid.org/0000-0002-4035-0289>)
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>
Diff between js versions 1.1 dated 2017-07-28 and 1.2 dated 2020-06-03
DESCRIPTION | 12 MD5 | 18 NAMESPACE | 1 R/uglify.R | 15 build/vignette.rds |binary inst/doc/intro.Rmd | 2 inst/doc/intro.html | 1621 ++++++++++++++++++++++++++++++++++++++++++++++++---- inst/js/zzz.js | 13 man/uglify.Rd | 5 vignettes/intro.Rmd | 2 10 files changed, 1552 insertions(+), 137 deletions(-)
Title: Tools for R Markdown to Docx Documents
Description: A set of helper functions for using R Markdown to create documents
in docx format, especially documents for use in a classroom or workshop
setting.
Author: Richard Layton [aut, cre]
Maintainer: Richard Layton <graphdoctor@gmail.com>
Diff between docxtools versions 0.2.1 dated 2019-02-09 and 0.2.2 dated 2020-06-03
DESCRIPTION | 10 - MD5 | 40 ++-- NAMESPACE | 2 NEWS.md | 19 + R/format_engr.R | 20 +- README.md | 268 ++++++++++++++++++++++++++-- build/vignette.rds |binary inst/WORDLIST | 1 inst/doc/numbers-in-engineering-format.R | 36 +-- inst/doc/numbers-in-engineering-format.Rmd | 2 inst/doc/numbers-in-engineering-format.html | 128 ++++++------- inst/doc/put-workspace-in-docx.R | 4 inst/doc/put-workspace-in-docx.Rmd | 22 +- inst/doc/put-workspace-in-docx.html | 148 +++++++-------- man/density.Rd | 6 man/docxtools.Rd | 1 man/figures/README-004-1.png |binary man/figures/README-005-1.png |binary man/format_engr.Rd | 4 vignettes/numbers-in-engineering-format.Rmd | 2 vignettes/put-workspace-in-docx.Rmd | 22 +- 21 files changed, 506 insertions(+), 229 deletions(-)
Title: Sequence ('FASTA'), Annotation ('GFF') and Variants ('VCF') for
17 Samples of 'P. Infestans" and 1 'P. Mirabilis'
Description: Genomic data for the plant pathogen "Phytophthora infestans." It
includes a variant file ('VCF'), a sequence file ('FASTA') and an annotation file
('GFF'). This package is intended to be used as example data for packages that
work with genomic data.
Author: Brian J. Knaus [cre, aut],
Niklaus J. Grunwald [aut]
Maintainer: Brian J. Knaus <briank.lists@gmail.com>
Diff between pinfsc50 versions 1.1.0 dated 2016-12-02 and 1.2.0 dated 2020-06-03
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- man/pinfsc50.Rd | 5 ++--- 3 files changed, 8 insertions(+), 9 deletions(-)
Title: Robust Non-Linear Regression using AIC Scores
Description: Non-linear least squares regression with the Levenberg-Marquardt algorithm using multiple starting values for increasing the chance that the minimum found is the global minimum.
Author: Daniel Padfield [aut, cre],
Granville Matheson [aut]
Maintainer: Daniel Padfield <d.padfield@exeter.ac.uk>
Diff between nls.multstart versions 1.0.0 dated 2018-03-06 and 1.1.0 dated 2020-06-03
DESCRIPTION | 6 MD5 | 14 - NEWS.md | 6 R/nls_multstart.R | 2 README.md | 243 +++++++++++++++++++++------------ inst/image/README-confint_plot-1.png |binary inst/image/README-plot_many_fits-1.png |binary inst/image/README-plot_one_fit-1.png |binary 8 files changed, 176 insertions(+), 95 deletions(-)
Title: Read 'IPUMS' Extract Files
Description: An easy way to import census, survey and geographic data provided by 'IPUMS'
into R plus tools to help use the associated metadata to make analysis easier. 'IPUMS'
data describing 1.4 billion individuals drawn from over 750 censuses and surveys is
available free of charge from our website <https://ipums.org>.
Author: Greg Freedman Ellis [aut],
Derek Burk [aut, cre],
Joe Grover [ctb],
Minnesota Population Center [cph]
Maintainer: Derek Burk <ipums+cran@umn.edu>
Diff between ipumsr versions 0.4.3 dated 2020-04-30 and 0.4.4 dated 2020-06-03
DESCRIPTION | 6 +- MD5 | 20 ++++----- NEWS.md | 5 ++ R/lbl_helpers.r | 5 -- inst/doc/ipums-bigdata.html | 41 +++++++++---------- inst/doc/ipums-cps.html | 4 - inst/doc/ipums-geography.html | 4 - inst/doc/ipums-nhgis.html | 6 +- inst/doc/ipums-terra.html | 4 - inst/doc/ipums.html | 4 - inst/doc/value-labels.html | 87 +++++++++++++++--------------------------- 11 files changed, 83 insertions(+), 103 deletions(-)
Title: Geometric Morphometric Analyses of 2D/3D Landmark Data
Description: Read, manipulate, and digitize landmark data, generate shape
variables via Procrustes analysis for points, curves and surfaces, perform
shape analyses, and provide graphical depictions of shapes and patterns of
shape variation.
Author: Dean Adams [aut, cre],
Michael Collyer [aut],
Antigoni Kaliontzopoulou [aut]
Maintainer: Dean Adams <dcadams@iastate.edu>
Diff between geomorph versions 3.2.1 dated 2020-01-27 and 3.3.0 dated 2020-06-03
geomorph-3.2.1/geomorph/man/advanced.procD.lm.Rd |only geomorph-3.2.1/geomorph/man/nested.update.Rd |only geomorph-3.2.1/geomorph/man/print.plotTangentSpace.Rd |only geomorph-3.2.1/geomorph/man/procD.allometry.Rd |only geomorph-3.2.1/geomorph/man/summary.plotTangentSpace.Rd |only geomorph-3.3.0/geomorph/DESCRIPTION | 10 geomorph-3.3.0/geomorph/MD5 | 139 - geomorph-3.3.0/geomorph/NAMESPACE | 6 geomorph-3.3.0/geomorph/NEWS.md | 1284 +++++++------- geomorph-3.3.0/geomorph/R/bilat.symmetry.r | 219 +- geomorph-3.3.0/geomorph/R/combine.subsets.R | 95 - geomorph-3.3.0/geomorph/R/compare.evol.rates.r | 3 geomorph-3.3.0/geomorph/R/compare.multi.evol.rates.r | 1 geomorph-3.3.0/geomorph/R/define.sliders.r | 4 geomorph-3.3.0/geomorph/R/deprecated.defunct.r | 38 geomorph-3.3.0/geomorph/R/estimate.missing.r | 8 geomorph-3.3.0/geomorph/R/fixed.angle.r | 2 geomorph-3.3.0/geomorph/R/geomorph.support.code.r | 349 +-- geomorph-3.3.0/geomorph/R/geomorph.utils.r | 277 +-- geomorph-3.3.0/geomorph/R/gm.prcomp.R | 303 ++- geomorph-3.3.0/geomorph/R/morphol.disparity.r | 2 geomorph-3.3.0/geomorph/R/physignal.r | 298 +-- geomorph-3.3.0/geomorph/R/picknplot.shape.r | 4 geomorph-3.3.0/geomorph/R/plotAllometry.r | 245 +- geomorph-3.3.0/geomorph/R/plotGMPhyloMorphoSpace.r | 175 - geomorph-3.3.0/geomorph/R/plotOutliers.r | 17 geomorph-3.3.0/geomorph/R/plotRefToTarget.r | 46 geomorph-3.3.0/geomorph/R/plotTangentSpace.r | 182 - geomorph-3.3.0/geomorph/R/plotspec.r | 133 + geomorph-3.3.0/geomorph/R/readland.fcsv.r |only geomorph-3.3.0/geomorph/R/readland.shapes.r | 2 geomorph-3.3.0/geomorph/R/readland.tps.r | 6 geomorph-3.3.0/geomorph/R/shape.predictor.r | 8 geomorph-3.3.0/geomorph/R/shapeHulls.r | 3 geomorph-3.3.0/geomorph/R/shared.support.code.R | 186 +- geomorph-3.3.0/geomorph/R/warpRefMesh.r | 4 geomorph-3.3.0/geomorph/R/warpRefOutline.r | 2 geomorph-3.3.0/geomorph/build/vignette.rds |binary geomorph-3.3.0/geomorph/data/lizards.rda |only geomorph-3.3.0/geomorph/inst/CITATION | 2 geomorph-3.3.0/geomorph/inst/doc/geomorph.PCA.R |only geomorph-3.3.0/geomorph/inst/doc/geomorph.PCA.Rmd |only geomorph-3.3.0/geomorph/inst/doc/geomorph.PCA.html |only geomorph-3.3.0/geomorph/inst/doc/geomorph.assistance.Rmd | 12 geomorph-3.3.0/geomorph/inst/doc/geomorph.assistance.html | 150 - geomorph-3.3.0/geomorph/inst/doc/geomorph.digitize3D.Rmd | 2 geomorph-3.3.0/geomorph/inst/doc/geomorph.digitize3D.html | 6 geomorph-3.3.0/geomorph/inst/doc/geomorph.functions.Rmd | 2 geomorph-3.3.0/geomorph/inst/doc/geomorph.functions.html | 6 geomorph-3.3.0/geomorph/man/bilat.symmetry.Rd | 184 +- geomorph-3.3.0/geomorph/man/combine.subsets.Rd | 84 geomorph-3.3.0/geomorph/man/compare.evol.rates.Rd | 2 geomorph-3.3.0/geomorph/man/define.sliders.Rd | 4 geomorph-3.3.0/geomorph/man/fixed.angle.Rd | 2 geomorph-3.3.0/geomorph/man/gm.prcomp.Rd | 182 + geomorph-3.3.0/geomorph/man/lizards.Rd |only geomorph-3.3.0/geomorph/man/morphol.disparity.Rd | 2 geomorph-3.3.0/geomorph/man/mshape.Rd | 23 geomorph-3.3.0/geomorph/man/physignal.Rd | 7 geomorph-3.3.0/geomorph/man/plot.gm.prcomp.Rd | 28 geomorph-3.3.0/geomorph/man/plotAllometry.Rd | 96 - geomorph-3.3.0/geomorph/man/plotGMPhyloMorphoSpace.Rd | 92 - geomorph-3.3.0/geomorph/man/plotOutliers.Rd | 2 geomorph-3.3.0/geomorph/man/plotRefToTarget.Rd | 32 geomorph-3.3.0/geomorph/man/plotTangentSpace.Rd | 105 - geomorph-3.3.0/geomorph/man/plotspec.Rd | 40 geomorph-3.3.0/geomorph/man/readland.fcsv.Rd |only geomorph-3.3.0/geomorph/man/readland.shapes.Rd | 2 geomorph-3.3.0/geomorph/man/shape.predictor.Rd | 8 geomorph-3.3.0/geomorph/man/shapeHulls.Rd | 3 geomorph-3.3.0/geomorph/man/warpRefMesh.Rd | 4 geomorph-3.3.0/geomorph/man/warpRefOutline.Rd | 2 geomorph-3.3.0/geomorph/vignettes/figs/PCAplot2D.png |only geomorph-3.3.0/geomorph/vignettes/figs/tree.plot.png |only geomorph-3.3.0/geomorph/vignettes/geomorph.PCA.Rmd |only geomorph-3.3.0/geomorph/vignettes/geomorph.assistance.Rmd | 12 geomorph-3.3.0/geomorph/vignettes/geomorph.digitize3D.Rmd | 2 geomorph-3.3.0/geomorph/vignettes/geomorph.functions.Rmd | 2 78 files changed, 2733 insertions(+), 2418 deletions(-)
Title: Public Subject Attention via Wikipedia Page View Statistics
Description: A convenience wrapper for the Wikipedia page access statistics API
binding the 'pageviews' package and using an additional self composed data
source thus covering a time span from very late 2007 up to the present for
daily page views.
Author: Peter Meissner [aut, cre],
R Core Team [cph]
Maintainer: Peter Meissner <retep.meissner@gmail.com>
Diff between wikipediatrend versions 2.1.4 dated 2019-09-21 and 2.1.6 dated 2020-06-03
DESCRIPTION | 10 +- MD5 | 47 ++++----- NAMESPACE | 2 R/wp_trend2.R | 9 + README.md | 86 +++++++++++++++-- man/figures/README-unnamed-chunk-17-1.png |binary man/figures/README-unnamed-chunk-20-1.png |only man/plot.wp_df.Rd | 30 +++--- man/print.wp_df.Rd | 30 +++--- man/wiki_search.Rd | 30 +++--- man/wp_check_date_inputs.Rd | 34 +++--- man/wp_check_page_input.Rd | 26 ++--- man/wp_date.Rd | 150 +++++++++++++++--------------- man/wp_day.Rd | 60 ++++++------ man/wp_get_data.Rd | 90 +++++++++--------- man/wp_linked_pages.Rd | 34 +++--- man/wp_month.Rd | 64 ++++++------ man/wp_prepare_date_for_pageviews.Rd | 32 +++--- man/wp_trend.Rd | 89 +++++++++-------- man/wp_wday.Rd | 66 ++++++------- man/wp_year.Rd | 56 +++++------ man/wp_yearmonth.Rd | 30 +++--- man/wpd_decompress.Rd | 30 +++--- man/wpd_get_exact.Rd | 70 +++++++------- man/wpd_search.Rd | 30 +++--- 25 files changed, 594 insertions(+), 511 deletions(-)
More information about wikipediatrend at CRAN
Permanent link
Title: Analysis of Sleep Data
Description: Provides users functions for sleep data management and analysis such as European Data Format (EDF) to Morpheo Data Format (MDF) conversion: P.Bouchequet, D.Jin, G.Solelhac, M.Chennaoui, D.Leger (2018) <doi:10.1016/j.msom.2018.01.130> "Morpheo Data Format (MDF), un nouveau format de donnees simple, robuste et performant pour stocker et analyser les enregistrements de sommeil". Provides hypnogram statistics computing and visualisation functions from the American Academy of Sleep Medicine (AASM) manual "The AASM Manual for the Scoring of Sleep and Associated Events" <https://aasm.org/clinical-resources/scoring-manual/>.
Author: Paul Bouchequet <paul.bouchequet@frenchkpi.com>
Maintainer: Paul Bouchequet <paul.bouchequet@frenchkpi.com>
Diff between rsleep versions 1.0.2 dated 2020-05-08 and 1.0.3 dated 2020-06-03
DESCRIPTION | 8 +-- MD5 | 8 ++- R/eeg.R | 104 ++++++++++++++++++++++++++++++++++++++++++++++ man/psm.Rd |only man/pwelch.Rd |only tests/testthat/test_eeg.R | 8 +++ 6 files changed, 121 insertions(+), 7 deletions(-)
Title: Pivotal Methods for Bayesian Relabelling and k-Means Clustering
Description: Collection of pivotal algorithms
for: relabelling the MCMC chains in order to undo the label
switching problem in Bayesian mixture models,
as proposed in Egidi, Pappadà, Pauli and Torelli (2018a)<doi:10.1007/s11222-017-9774-2>;
initializing the centers of the classical k-means algorithm
in order to obtain a better clustering solution. For further details see
Egidi, Pappadà, Pauli and Torelli (2018b)<ISBN:9788891910233>.
Author: Leonardo Egidi[aut, cre],
Roberta Pappadà[aut],
Francesco Pauli[aut],
Nicola Torelli[aut]
Maintainer: Leonardo Egidi <legidi@units.it>
Diff between pivmet versions 0.2.0 dated 2019-06-24 and 0.3.0 dated 2020-06-03
DESCRIPTION | 15 MD5 | 46 - NAMESPACE | 20 NEWS.md | 15 R/bayes_mcmc.R | 291 +++--- R/musk.R | 27 R/plot.R | 21 R/relab.R | 46 - R/sim.R | 40 build/vignette.rds |binary inst/doc/K-means_clustering_using_the_MUS_algorithm.R | 11 inst/doc/K-means_clustering_using_the_MUS_algorithm.Rmd | 11 inst/doc/K-means_clustering_using_the_MUS_algorithm.html | 118 +- inst/doc/Relabelling_in_Bayesian_mixtures_by_pivotal_units.R | 33 inst/doc/Relabelling_in_Bayesian_mixtures_by_pivotal_units.Rmd | 80 + inst/doc/Relabelling_in_Bayesian_mixtures_by_pivotal_units.html | 416 +++++----- man/piv_KMeans.Rd | 13 man/piv_MCMC.Rd | 101 +- man/piv_plot.Rd | 1 man/piv_rel.Rd | 12 man/piv_sim.Rd | 29 vignettes/K-means_clustering_using_the_MUS_algorithm.Rmd | 11 vignettes/Relabelling_in_Bayesian_mixtures_by_pivotal_units.Rmd | 80 + vignettes/ref.bib | 11 24 files changed, 793 insertions(+), 655 deletions(-)
Title: Extended Mixed Models Using Latent Classes and Latent Processes
Description: Estimation of various extensions of the mixed models including latent class mixed models, joint latent latent class mixed models and mixed models for curvilinear univariate or multivariate longitudinal outcomes using a maximum likelihood estimation method (Proust-Lima, Philipps, Liquet (2017) <doi:10.18637/jss.v078.i02>).
Author: Cecile Proust-Lima, Viviane Philipps, Amadou Diakite and Benoit Liquet
Maintainer: Cecile Proust-Lima <cecile.proust-lima@inserm.fr>
Diff between lcmm versions 1.8.1.1 dated 2020-05-26 and 1.9.1 dated 2020-06-03
DESCRIPTION | 12 MD5 | 102 - NAMESPACE | 8 NEWS | 15 R/Jointlcmm.R | 14 R/gridsearch.R | 82 + R/hlme.R | 12 R/lcmm-package.R | 13 R/mpjlcmm.R | 21 R/multlcmm.R | 35 R/plot.R | 3 R/predYmedian.R |only R/predictL.multlcmm.R | 696 +++++----- R/predictY.lcmm.R | 1504 +++++++++++------------ R/predictY.multlcmm.R | 681 +++++----- R/predictYcond.R | 9 R/summary.mpjlcmm.R | 36 R/summary.multlcmm.R | 2 R/update.mpjlcmm.R | 14 THANKS | 2 build/partial.rdb |only build/vignette.rds |binary inst/doc/introduction.html | 140 -- inst/doc/latent_class_model_with_hlme.R | 9 inst/doc/latent_class_model_with_hlme.Rmd | 14 inst/doc/latent_class_model_with_hlme.html | 321 ++-- inst/doc/latent_process_model_with_lcmm.R | 5 inst/doc/latent_process_model_with_lcmm.Rmd | 6 inst/doc/latent_process_model_with_lcmm.html | 296 ++-- inst/doc/latent_process_model_with_multlcmm.R | 27 inst/doc/latent_process_model_with_multlcmm.Rmd | 27 inst/doc/latent_process_model_with_multlcmm.html | 381 ++--- inst/doc/pre_normalizing.R | 9 inst/doc/pre_normalizing.Rmd | 5 inst/doc/pre_normalizing.html | 147 -- inst/doc/usual_problems.html | 15 man/gridsearch.Rd | 5 man/lcmm-package.Rd | 9 man/mpjlcmm.Rd | 21 man/multlcmm.Rd | 2 man/plot.Rd | 3 man/predictY.Rd | 6 man/predictYcond.Rd | 7 src/Jointhet.f90 | 59 src/init.c | 2 src/lcmm.h | 4 src/mpjhet.f90 | 36 src/postprob2.f90 | 3 src/predictYcond.f90 | 10 vignettes/latent_class_model_with_hlme.Rmd | 14 vignettes/latent_process_model_with_lcmm.Rmd | 6 vignettes/latent_process_model_with_multlcmm.Rmd | 27 vignettes/pre_normalizing.Rmd | 5 53 files changed, 2566 insertions(+), 2316 deletions(-)
Title: Easily Process a Batch of Cox Models
Description: A tool to operate a batch of univariate or multivariate
Cox models and return tidy result.
Author: Shixiang Wang [aut, cre] (<https://orcid.org/0000-0001-9855-7357>)
Maintainer: Shixiang Wang <w_shixiang@163.com>
Diff between ezcox versions 0.5.0 dated 2020-05-10 and 0.6.0 dated 2020-06-03
DESCRIPTION | 6 MD5 | 42 - NEWS.md | 100 +-- R/clean_model_dir.R | 36 - R/ezcox.R | 474 ++++++++--------- R/ezcox_parallel.R | 246 ++++---- R/filter_ezcox.R | 114 ++-- R/get_models.R | 112 ++-- R/show_forest.R | 104 +-- R/show_models.R | 123 ++-- R/utils.R | 16 R/zzz.R | 30 - README.md | 232 ++++---- build/vignette.rds |binary inst/CITATION | 32 - inst/doc/ezcox.R | 96 +-- inst/doc/ezcox.Rmd | 226 ++++---- inst/doc/ezcox.html | 1077 +++++++++++++++++++-------------------- man/ezcox.Rd | 158 ++--- man/show_forest.Rd | 134 ++-- tests/testthat/test-test_ezcox.R | 108 +-- vignettes/ezcox.Rmd | 226 ++++---- 22 files changed, 1854 insertions(+), 1838 deletions(-)
Title: Send Email Messages
Description: A light, simple tool for sending emails with minimal dependencies.
Author: Andrew B. Collier [aut, cre],
Gerard Walsh [ctb],
Antoine Bichat [ctb] (<https://orcid.org/0000-0001-6599-7081>),
Daniel Fahey [ctb],
Johann R. Kleinbub [ctb],
Panagiotis Moulos [ctb]
Maintainer: Andrew B. Collier <andrew@exegetic.biz>
Diff between emayili versions 0.3.9 dated 2020-03-07 and 0.4.0 dated 2020-06-03
DESCRIPTION | 8 ++-- MD5 | 21 ++++++------ R/envelope.R | 11 +++++- R/message.R | 23 ++++++++++++- R/mime.R | 21 +++++++++--- R/server.R | 73 +++++++++++++++++-------------------------- README.md | 54 ++++++++++++++++++++++++++----- man/message.Rd | 23 ++++++++++++- man/print.envelope.Rd |only man/server.Rd | 14 +++++++- tests/testthat/setup-files.R | 2 + tests/testthat/test-server.R | 18 +++++++--- 12 files changed, 186 insertions(+), 82 deletions(-)
Title: Beyond the Border - Kernel Density Estimation for Urban
Geography
Description: The kernelSmoothing() function allows you to square and smooth geolocated data. It calculates a classical kernel smoothing (conservative) or a geographically weighted median. There are four major call modes of the function.
The first call mode is kernelSmoothing(obs, epsg, cellsize, bandwith) for a classical kernel smoothing and automatic grid.
The second call mode is kernelSmoothing(obs, epsg, cellsize, bandwith, quantiles) for a geographically weighted median and automatic grid.
The third call mode is kernelSmoothing(obs, epsg, cellsize, bandwith, centroids) for a classical kernel smoothing and user grid.
The fourth call mode is kernelSmoothing(obs, epsg, cellsize, bandwith, quantiles, centroids) for a geographically weighted median and user grid.
Geographically weighted summary statistics : a framework for localised exploratory data analysis, C.Brunsdon & al., in Computers, Environment and Urban Systems C.Brunsdon & al. (2002) <doi:10.1016/S0198-9715(01)00009-6>,
Statistical Analysis of Spatial and Spatio-Temporal Point Patterns, Third Edition, Diggle, pp. 83-86, (2003) <doi:10.1080/13658816.2014.937718>.
Author: Arlindo Dos Santos [cre],
Francois Semecurbe [drt, aut],
Auriane Renaud [ctb],
Cynthia Faivre [ctb],
Thierry Cornely [ctb],
Farida Marouchi [ctb],
Farida Marouchi [ctb]
Maintainer: Arlindo Dos Santos <Arlindo.Dos-Santos@insee.fr>
Diff between btb versions 0.1.30.1 dated 2020-05-26 and 0.1.30.3 dated 2020-06-03
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- NAMESPACE | 4 ---- man/dfToGrid.Rd | 4 ++-- 4 files changed, 9 insertions(+), 13 deletions(-)
Title: A Shiny App for UCSC Xena Database
Description: Provides a web app for downloading, analyzing and
visualizing datasets from UCSC Xena (<http://xena.ucsc.edu/>), which is a collection of
UCSC-hosted public databases such as TCGA, ICGC, TARGET, GTEx, CCLE,
and others.
Author: Shixiang Wang [aut, cre] (<https://orcid.org/0000-0001-9855-7357>),
Yi Xiong [aut] (<https://orcid.org/0000-0002-4370-9824>),
Longfei Zhao [aut] (<https://orcid.org/0000-0002-6277-0137>),
Kai Gu [aut] (<https://orcid.org/0000-0002-0177-0774>),
Yin Li [aut],
Fei Zhao [aut]
Maintainer: Shixiang Wang <w_shixiang@163.com>
Diff between UCSCXenaShiny versions 0.4.0 dated 2019-11-02 and 0.5.0 dated 2020-06-03
DESCRIPTION | 8 MD5 | 112 NAMESPACE | 32 NEWS.md | 74 R/GeomSplitViolin.R | 110 R/data.R | 112 R/get_pancan_value.R | 202 R/ope_pancan_value.R | 120 R/run.R | 56 R/utils-pipe.R | 34 R/vis_pancan_value.R | 378 R/xenashiny.R | 9 README.md | 130 inst/modules_apps/app.R | 38 inst/modules_apps/simple_module_from_rstudio.R | 64 inst/modules_apps/xx_modules.R | 98 inst/shinyapp/App.R | 194 inst/shinyapp/modules/home-pancan-search.R | 104 inst/shinyapp/modules/modules-pancan-search.R | 94 inst/shinyapp/modules/modules-survival-analysis.R | 460 inst/shinyapp/server/home.R | 106 inst/shinyapp/server/modules.R | 4 inst/shinyapp/server/repository.R | 442 inst/shinyapp/ui/developers.R | 254 inst/shinyapp/ui/footer.R | 28 inst/shinyapp/ui/help.R | 28 inst/shinyapp/ui/home.R | 270 inst/shinyapp/ui/modules.R | 36 inst/shinyapp/ui/pipelines.R | 14 inst/shinyapp/ui/repository.R | 272 inst/shinyapp/www/bootstrap4.css | 704 inst/shinyapp/www/css/bootstrap-grid.css | 4098 ++--- inst/shinyapp/www/css/bootstrap-grid.min.css | 12 inst/shinyapp/www/css/bootstrap-reboot.css | 658 inst/shinyapp/www/css/bootstrap-reboot.min.css | 14 inst/shinyapp/www/css/bootstrap.css |17948 +++++++++++----------- inst/shinyapp/www/css/bootstrap.min.css | 12 inst/shinyapp/www/js/bootstrap.bundle.js |12656 +++++++-------- inst/shinyapp/www/js/bootstrap.bundle.min.js | 12 inst/shinyapp/www/js/bootstrap.js | 7788 ++++----- inst/shinyapp/www/js/bootstrap.min.js | 12 man/UCSCXenaShiny.Rd | 19 man/XenaInfo.Rd | 34 man/app_run.Rd | 32 man/available_hosts.Rd | 34 man/dat_datasets.Rd | 34 man/dat_samples.Rd | 34 man/get_pancan_value.Rd | 105 man/ope_toil_gene.Rd | 48 man/pipe.Rd | 24 man/tcga_gtex.Rd | 28 man/toil_info.Rd | 34 man/toil_surv.Rd | 34 man/vis_toil_TvsN.Rd | 75 man/vis_toil_gene.Rd | 103 tests/testthat/test-run_app.R | 2 tests/testthat/test-vis_pancan_value.R | 10 57 files changed, 24249 insertions(+), 24198 deletions(-)
Title: A Hypothesis Testing Framework for Validating an Assay for
Precision
Description: A common way of validating a biological assay for is through a
procedure, where m levels of an analyte are measured with n replicates at each
level, and if all m estimates of the coefficient of variation (CV) are less
than some prespecified level, then the assay is declared validated for precision
within the range of the m analyte levels. Two limitations of this procedure are:
there is no clear statistical statement of precision upon passing, and it is
unclear how to modify the procedure for assays with constant standard deviation.
We provide tools to convert such a procedure into a set of m hypothesis tests.
This reframing motivates the m:n:q procedure, which upon completion delivers
a 100q% upper confidence limit on the CV. Additionally, for a post-validation
assay output of y, the method gives an ``effective standard deviation interval''
of log(y) plus or minus r, which is a 68% confidence interval on log(mu), where
mu is the expected value of the assay output for that sample. Further, the m:n:q
procedure can be straightforwardly applied to constant standard deviation assays.
We illustrate these tools by applying them to a growth inhibition assay. This is
an implementation of the methods described in Fay, Sachs, and Miura (2018)
<doi:10.1002/sim.7528>.
Author: Michael C Sachs and Michael P Fay
Maintainer: Michael C Sachs <sachsmc@gmail.com>
Diff between testassay versions 0.1.0 dated 2016-11-29 and 0.1.1 dated 2020-06-03
DESCRIPTION | 16 - LICENSE | 2 MD5 | 33 +- NEWS | 8 README.md | 4 build/vignette.rds |binary data/gia.rda |binary inst/CITATION |only inst/doc/GIAValidationExample.R | 20 - inst/doc/GIAValidationExample.Rmd | 4 inst/doc/GIAValidationExample.html | 418 ++++++++++++++++++++++++++++--------- man/gia.Rd | 7 man/lognormConstCVCI.Rd | 1 man/normConstCVCI.Rd | 1 man/predict.assaytest.Rd | 1 man/print.assaytest.Rd | 1 man/testassay.Rd | 4 vignettes/GIAValidationExample.Rmd | 4 18 files changed, 382 insertions(+), 142 deletions(-)
Title: Estimation in Nonprobability Sampling
Description: Different inference procedures are proposed in the literature to correct for selection bias that might be introduced with non-random selection mechanisms. A class of methods to correct for selection bias is to apply a statistical model to predict the units not in the sample (super-population modeling). Other studies use calibration or Statistical Matching (statistically match nonprobability and probability samples). To date, the more relevant methods are weighting by Propensity Score Adjustment (PSA).
The Propensity Score Adjustment method was originally developed to construct weights by estimating response probabilities and using them in Horvitz–Thompson type estimators. This method is usually used by combining a non-probability sample with a reference sample to construct propensity models for the non-probability sample. Calibration can be used in a posterior way to adding information of auxiliary variables.
Propensity scores in PSA are usually estimated using logistic regression models. Machine learning classification algorithms can be used as alternatives for logistic regression as a technique to estimate propensities.
The package 'NonProbEst' implements some of these methods and thus provides a wide options to work with data coming from a non-probabilistic sample.
Author: Luis Castro Martín <luiscastro193@gmail.com>, Ramón Ferri García <rferri@ugr.es> and María del Mar Rueda <mrueda@ugr.es>
Maintainer: Luis Castro Martín <luiscastro193@gmail.com>
Diff between NonProbEst versions 0.2.3 dated 2019-12-17 and 0.2.4 dated 2020-06-03
DESCRIPTION | 10 +-- MD5 | 44 ++++++++-------- R/NonProbEst.R | 102 +++++++++++++++++++++----------------- man/calib_weights.Rd | 4 - man/confidence_interval.Rd | 2 man/fast_jackknife_variance.Rd | 2 man/generic_jackknife_variance.Rd | 9 ++- man/jackknife_variance.Rd | 8 +- man/lee_weights.Rd | 2 man/matching.Rd | 8 +- man/mean_estimation.Rd | 2 man/model_assisted.Rd | 8 +- man/model_based.Rd | 9 ++- man/model_calibrated.Rd | 8 +- man/population.Rd | 4 + man/prop_estimation.Rd | 6 +- man/propensities.Rd | 4 - man/sampleNP.Rd | 4 + man/sampleP.Rd | 4 + man/sc_weights.Rd | 2 man/total_estimation.Rd | 2 man/valliant_weights.Rd | 2 man/vd_weights.Rd | 2 23 files changed, 139 insertions(+), 109 deletions(-)
Title: Utilities for Working with NEON Data
Description: NEON data packages can be accessed through the NEON Data Portal <https://data.neonscience.org/home>
or through the NEON Data API (see <https://data.neonscience.org/data-api> for documentation). Data delivered from
the Data Portal are provided as monthly zip files packaged within a parent zip file, while individual files
can be accessed from the API. This package provides tools that aid in discovering, downloading, and reformatting
data prior to use in analyses. This includes downloading data via the API, merging data tables by type, and
converting formats. For more information, see the readme file at <https://github.com/NEONScience/NEON-utilities>.
Author: Claire Lunch [aut, cre, ctb],
Christine Laney [aut, ctb],
Nathan Mietkiewicz [aut, ctb],
Eric Sokol [aut, ctb],
Kaelin Cawley [aut, ctb],
NEON (National Ecological Observatory Network) [aut]
Maintainer: Claire Lunch <clunch@battelleecology.org>
Diff between neonUtilities versions 1.3.4 dated 2020-04-30 and 1.3.5 dated 2020-06-03
DESCRIPTION | 10 ++-- MD5 | 49 +++++++++++------------ R/byFileAOP.R | 13 ++++-- R/byTileAOP.R | 13 +++++- R/getAPI.R | 78 +++++++++++++++++++++++++++---------- R/getAvg.R | 8 ++- R/getDatatable.R | 6 +- R/getFileUrls.R | 7 ++- R/getProductInfo.R | 5 +- R/getTaxonTable.R | 13 +++++- R/getTileUrls.R | 7 +-- R/getZipUrls.R | 17 +++++--- R/loadByProduct.R | 5 +- R/stackByTable.R | 9 +++- R/sysdata.rda |binary R/zipsByProduct.R | 24 +++++++++-- README.md | 22 +++++++++- man/getAPI.Rd | 6 -- man/getAvg.Rd | 2 man/getDatatable.Rd | 2 man/getTaxonTable.Rd | 11 +++++ man/getTileUrls.Rd | 4 + man/getZipUrls.Rd | 2 man/zipsByProduct.Rd | 2 tests/testthat/test_byTileAOP.R |only tests/testthat/test_getDatatable.R | 17 ++------ 26 files changed, 233 insertions(+), 99 deletions(-)
Title: Analyses of Phylogenetics and Evolution
Description: Functions for reading, writing, plotting, and manipulating phylogenetic trees, analyses of comparative data in a phylogenetic framework, ancestral character analyses, analyses of diversification and macroevolution, computing distances from DNA sequences, reading and writing nucleotide sequences as well as importing from BioConductor, and several tools such as Mantel's test, generalized skyline plots, graphical exploration of phylogenetic data (alex, trex, kronoviz), estimation of absolute evolutionary rates and clock-like trees using mean path lengths and penalized likelihood, dating trees with non-contemporaneous sequences, translating DNA into AA sequences, and assessing sequence alignments. Phylogeny estimation can be done with the NJ, BIONJ, ME, MVR, SDM, and triangle methods, and several methods handling incomplete distance matrices (NJ*, BIONJ*, MVR*, and the corresponding triangle method). Some functions call external applications (PhyML, Clustal, T-Coffee, Muscle) whose results are returned into R.
Author: Emmanuel Paradis [aut, cre, cph]
(<https://orcid.org/0000-0003-3092-2199>),
Simon Blomberg [aut, cph] (<https://orcid.org/0000-0003-1062-0839>),
Ben Bolker [aut, cph] (<https://orcid.org/0000-0002-2127-0443>),
Joseph Brown [aut, cph],
Santiago Claramunt [aut, cph] (<https://orcid.org/0000-0002-8926-5974>),
Julien Claude [aut, cph] (<https://orcid.org/0000-0002-9267-1228>),
Hoa Sien Cuong [aut, cph],
Richard Desper [aut, cph],
Gilles Didier [aut, cph] (<https://orcid.org/0000-0003-0596-9112>),
Benoit Durand [aut, cph],
Julien Dutheil [aut, cph] (<https://orcid.org/0000-0001-7753-4121>),
RJ Ewing [aut, cph],
Olivier Gascuel [aut, cph],
Thomas Guillerme [aut, cph] (<https://orcid.org/0000-0003-4325-1275>),
Christoph Heibl [aut, cph] (<https://orcid.org/0000-0002-7655-3299>),
Anthony Ives [aut, cph],
Bradley Jones [aut, cph] (<https://orcid.org/0000-0003-4498-1069>),
Franz Krah [aut, cph] (<https://orcid.org/0000-0001-7866-7508>),
Daniel Lawson [aut, cph] (<https://orcid.org/0000-0002-5311-6213>),
Vincent Lefort [aut, cph],
Pierre Legendre [aut, cph] (<https://orcid.org/0000-0002-3838-3305>),
Jim Lemon [aut, cph],
Guillaume Louvel [aut, cph],
Eric Marcon [aut, cph] (<https://orcid.org/0000-0002-5249-321X>),
Rosemary McCloskey [aut, cph],
Johan Nylander [aut, cph],
Rainer Opgen-Rhein [aut, cph],
Andrei-Alin Popescu [aut, cph],
Manuela Royer-Carenzi [aut, cph],
Klaus Schliep [aut, cph] (<https://orcid.org/0000-0003-2941-0161>),
Korbinian Strimmer [aut, cph] (<https://orcid.org/0000-0001-7917-2056>),
Damien de Vienne [aut, cph] (<https://orcid.org/0000-0001-9532-5251>)
Maintainer: Emmanuel Paradis <Emmanuel.Paradis@ird.fr>
Diff between ape versions 5.3 dated 2019-03-17 and 5.4 dated 2020-06-03
ape-5.3/ape/src/TBR.c |only ape-5.4/ape/DESCRIPTION | 62 +- ape-5.4/ape/MD5 | 109 ++--- ape-5.4/ape/NAMESPACE | 34 - ape-5.4/ape/R/CDF.birth.death.R | 6 ape-5.4/ape/R/DNA.R | 100 ++++ ape-5.4/ape/R/PGLS.R | 113 ++--- ape-5.4/ape/R/as.bitsplits.R | 18 ape-5.4/ape/R/chronos.R | 115 ++++- ape-5.4/ape/R/drop.tip.R | 9 ape-5.4/ape/R/is.monophyletic.R | 12 ape-5.4/ape/R/makeLabel.R | 14 ape-5.4/ape/R/me.R | 10 ape-5.4/ape/R/pcoa.R | 29 - ape-5.4/ape/R/plot.phylo.R | 6 ape-5.4/ape/R/read.GenBank.R | 116 ++++- ape-5.4/ape/R/read.nexus.R | 1 ape-5.4/ape/R/read.nexus.data.R | 42 +- ape-5.4/ape/R/root.R | 7 ape-5.4/ape/build/vignette.rds |binary ape-5.4/ape/inst/CITATION | 6 ape-5.4/ape/inst/doc/MoranI.pdf |binary ape-5.4/ape/man/AAbin.Rd | 19 ape-5.4/ape/man/Initialize.corPhyl.Rd | 2 ape-5.4/ape/man/MoranI.Rd | 2 ape-5.4/ape/man/ace.Rd | 13 ape-5.4/ape/man/as.phylo.formula.Rd | 2 ape-5.4/ape/man/chronos.Rd | 7 ape-5.4/ape/man/compar.cheverud.Rd | 2 ape-5.4/ape/man/compar.lynch.Rd | 2 ape-5.4/ape/man/compute.brlen.Rd | 2 ape-5.4/ape/man/corBlomberg.Rd | 16 ape-5.4/ape/man/corBrownian.Rd | 6 ape-5.4/ape/man/corClasses.Rd | 18 ape-5.4/ape/man/corGrafen.Rd | 6 ape-5.4/ape/man/corMartins.Rd | 6 ape-5.4/ape/man/corPagel.Rd | 4 ape-5.4/ape/man/correlogram.formula.Rd | 2 ape-5.4/ape/man/fastme.Rd | 13 ape-5.4/ape/man/getAnnotationsGenBank.Rd |only ape-5.4/ape/man/latag2n.Rd |only ape-5.4/ape/man/mst.Rd | 2 ape-5.4/ape/man/pic.Rd | 8 ape-5.4/ape/man/plot.varcomp.Rd | 2 ape-5.4/ape/man/read.GenBank.Rd | 30 + ape-5.4/ape/man/read.caic.Rd | 2 ape-5.4/ape/man/read.nexus.data.Rd | 2 ape-5.4/ape/man/root.Rd | 5 ape-5.4/ape/man/seg.sites.Rd | 21 - ape-5.4/ape/man/trans.Rd | 8 ape-5.4/ape/man/varcomp.Rd | 2 ape-5.4/ape/src/ape.c | 45 +- ape-5.4/ape/src/dist_dna.c | 650 ++++++++++++++++++++++++++++--- ape-5.4/ape/src/me.c | 6 ape-5.4/ape/src/prop_part.cpp | 2 ape-5.4/ape/src/read_dna.c | 6 ape-5.4/ape/src/tree_build.c | 15 57 files changed, 1325 insertions(+), 412 deletions(-)
More information about MMRcaseselection at CRAN
Permanent link
Title: Measuring Disparity
Description: A modular package for measuring disparity (multidimensional space occupancy). Disparity can be calculated from any matrix defining a multidimensional space. The package provides a set of implemented metrics to measure properties of the space and allows users to provide and test their own metrics (Guillerme (2018) <doi:10.1111/2041-210X.13022>). The package also provides functions for looking at disparity in a serial way (e.g. disparity through time - Guillerme and Cooper (2018) <doi:10.1111/pala.12364>) or per groups as well as visualising the results. Finally, this package provides several statistical tests for disparity analysis.
Author: Thomas Guillerme [aut, cre, cph],
Mark N Puttick [aut, cph]
Maintainer: Thomas Guillerme <guillert@tcd.ie>
Diff between dispRity versions 1.4.0 dated 2020-05-05 and 1.4.1 dated 2020-06-03
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- NEWS.md | 8 ++++++++ R/Claddis.ordination.R | 4 ++-- R/Claddis.ordination_fun.R | 34 ---------------------------------- R/zzz.R | 2 +- data/BeckLee_disparity.rda |binary data/disparity.rda |binary 8 files changed, 22 insertions(+), 48 deletions(-)
Title: Photobiological Calculations
Description: Definitions of classes, methods, operators and functions for use
in photobiology and radiation meteorology and climatology. Calculation of
effective (weighted) and not-weighted irradiances/doses, fluence rates,
transmittance, reflectance, absorptance, absorbance and diverse ratios and
other derived quantities from spectral data. Local maxima and minima: peaks,
valleys and spikes. Conversion between energy-and photon-based units.
Wavelength interpolation. Astronomical calculations related solar angles and
day length. Colours and vision. This package is part of the 'r4photobiology'
suite, Aphalo, P. J. (2015) <doi:10.19232/uv4pb.2015.1.14>.
Author: Pedro J. Aphalo [aut, cre] (<https://orcid.org/0000-0003-3385-972X>),
Titta K. Kotilainen [ctb] (<https://orcid.org/0000-0002-2822-9734>),
Glenn Davis [ctb],
Agnese Fazio [ctb]
Maintainer: Pedro J. Aphalo <pedro.aphalo@helsinki.fi>
Diff between photobiology versions 0.10.2 dated 2020-04-27 and 0.10.3 dated 2020-06-03
DESCRIPTION | 19 MD5 | 101 + NAMESPACE | 1931 ++++++++++++++++++------------------- NEWS | 30 R/calc.multipliers.r | 2 R/color.of.R | 47 R/d2.spectrum.r | 2 R/div.spectra.r | 25 R/fel.spectrum.r | 2 R/fraunhofer.r |only R/fresnel.r |only R/normalized.diff.idx.r | 30 R/oper.spectra.r | 2 R/s.e.irrad2rgb.r | 12 R/spct.classes.r | 67 - R/spct.compare.r | 4 R/spct.fscale.r | 8 R/spct.fshift.r | 2 R/spct.integrate.r | 1 R/spct.operators.r | 21 R/spct.ratios.R | 2 R/spct.smooth.spct.r | 29 R/spct.summaries.r | 13 R/spct.tag.r | 6 R/spct.transmittance.r | 5 R/sun.calc.r | 72 + R/waveband.class.r | 8 R/waveband.new.r | 2 R/zmspct.classes.R | 20 build/vignette.rds |binary data/colors-spct.rda |only inst/doc/userguide1-intro.html | 6 inst/doc/userguide2-radiation.R | 18 inst/doc/userguide2-radiation.Rmd | 8 inst/doc/userguide2-radiation.html | 883 ++++++++-------- inst/doc/userguide3-astronomy.html | 26 man/Rfr_from_n.Rd |only man/as_tod.Rd | 24 man/calc_multipliers.Rd | 2 man/color_of.Rd | 3 man/day_night.Rd | 2 man/diffraction_single_slit.Rd |only man/enable_check_spct.Rd | 12 man/format.solar_time.Rd | 2 man/format.tod_time.Rd |only man/is.solar_time.Rd | 2 man/log.Rd | 13 man/normalized_diff_ind.Rd | 6 man/print.solar_time.Rd | 2 man/print.tod_time.Rd |only man/rmDerivedSpct.Rd | 5 man/sinc.Rd |only man/solar_time.Rd | 2 man/sun_angles.Rd | 2 man/wl_colors.spct.Rd |only vignettes/userguide2-radiation.Rmd | 8 56 files changed, 1887 insertions(+), 1602 deletions(-)
Title: Multivariate Stochastic Linear Ornstein-Uhlenbeck Models for
Phylogenetic Comparative Hypotheses
Description: Fits multivariate Ornstein-Uhlenbeck types of models to continues trait data from species related by a common evolutionary history. See K. Bartoszek, J, Pienaar, P. Mostad, S. Andersson, T. F.Hansen (2012) <doi:10.1016/j.jtbi.2012.08.005>. The suggested PCMBaseCpp package (which significantly speeds up the likelihood calculations) can be obtained from <https://github.com/venelin/PCMBaseCpp/>.
Author: Krzysztof Bartoszek <krzbar@protonmail.ch>
Maintainer: Krzysztof Bartoszek <krzbar@protonmail.ch>
Diff between mvSLOUCH versions 2.4 dated 2020-02-24 and 2.5 dated 2020-06-03
DESCRIPTION | 10 +++++----- MD5 | 6 +++--- NAMESPACE | 3 --- man/mvSLOUCH-package.Rd | 4 ++-- 4 files changed, 10 insertions(+), 13 deletions(-)
Title: Filtering Matrix for Flow Mapping
Description: Functions to prepare and filter an origin-destination matrix for thematic flow mapping purposes.
This comes after Bahoken, Francoise (2016), Mapping flow matrix a contribution, PhD in Geography - Territorial sciences. See Bahoken (2017) <doi:10.4000/netcom.2565>.
Author: Sylvain Blondeau [aut, cre],
Francoise Bahoken [aut]
Maintainer: Sylvain Blondeau <blondeau.sylvain@yahoo.fr>
Diff between cartograflow versions 1.0.1 dated 2020-05-17 and 1.0.2 dated 2020-06-03
DESCRIPTION | 10 +- MD5 | 16 +-- R/flowjointure.R | 2 R/flowtype.R | 178 +++++++++++++++++++++++-------------- inst/doc/cartograflow_general.R | 8 - inst/doc/cartograflow_general.Rmd | 8 - inst/doc/cartograflow_general.html | 34 +++---- man/flowtype.Rd | 20 ++-- vignettes/cartograflow_general.Rmd | 8 - 9 files changed, 168 insertions(+), 116 deletions(-)
Title: Czekanowski's Diagrams
Description: Allows for production of Czekanowski's Diagrams. See A. Vasterlund (2019) Master thesis, Linkoping University.
Author: Albin Vasterlund [aut],
Krzysztof Bartoszek [cre, aut, ths]
Maintainer: Krzysztof Bartoszek <krzbar@protonmail.ch>
Diff between RMaCzek versions 1.3.3 dated 2020-04-09 and 1.3.4 dated 2020-06-03
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- NAMESPACE | 3 --- man/RMaCzek.Rd | 4 ++-- 4 files changed, 9 insertions(+), 12 deletions(-)
Title: Helper Functions for 'mlr3'
Description: Frequently used helper functions and assertions
used in 'mlr3' and its companion packages. Comes with helper functions
for functional programming, for printing, to work with 'data.table',
as well as some generally useful 'R6' classes. This package also
supersedes the package 'BBmisc'.
Author: Michel Lang [cre, aut] (<https://orcid.org/0000-0001-9754-0393>),
Patrick Schratz [aut] (<https://orcid.org/0000-0003-0748-6624>)
Maintainer: Michel Lang <michellang@gmail.com>
Diff between mlr3misc versions 0.2.0 dated 2020-04-15 and 0.3.0 dated 2020-06-03
DESCRIPTION | 6 +++--- MD5 | 16 ++++++++-------- NEWS.md | 4 ++++ R/unnest.R | 8 +++++--- R/with_package.R | 2 ++ README.md | 2 +- man/unnest.Rd | 8 +++++--- man/with_package.Rd | 2 ++ tests/testthat/test_unnest.R | 10 ++++++++++ 9 files changed, 40 insertions(+), 18 deletions(-)
Title: Mango Solutions Training Datasets
Description: Datasets to be used primarily in conjunction with Mango Solutions
training materials but also for the book 'SAMS Teach Yourself R in 24 Hours' (ISBN: 978-0-672-33848-9).
Version 1.0-7 is largely for use with the book; however, version 1.1 has a much greater focus on use with
training materials, whilst retaining compatibility with the book.
Author: Mango Solutions [aut],
Karina Marks [ctb, cre],
Aimee Gott [aut],
Andrew Little [ctb, dtc, rev],
Owen Jones [ctb]
Maintainer: Karina Marks <kmarks@mango-solutions.com>
Diff between mangoTraining versions 1.0-7 dated 2017-01-17 and 1.1 dated 2020-06-03
mangoTraining-1.0-7/mangoTraining/R/demoData.R |only mangoTraining-1.0-7/mangoTraining/R/dowJonesData.R |only mangoTraining-1.0-7/mangoTraining/R/drugs.R |only mangoTraining-1.0-7/mangoTraining/R/emaxData.R |only mangoTraining-1.0-7/mangoTraining/R/emaxFun.R |only mangoTraining-1.0-7/mangoTraining/R/logisticFun.R |only mangoTraining-1.0-7/mangoTraining/R/messyData.R |only mangoTraining-1.0-7/mangoTraining/R/missingPk.R |only mangoTraining-1.0-7/mangoTraining/R/pkData.R |only mangoTraining-1.0-7/mangoTraining/R/policyData.R |only mangoTraining-1.0-7/mangoTraining/R/qtpk2.R |only mangoTraining-1.0-7/mangoTraining/R/runData.R |only mangoTraining-1.0-7/mangoTraining/R/tubeData.R |only mangoTraining-1.0-7/mangoTraining/R/xpData.R |only mangoTraining-1.0-7/mangoTraining/data/demoData.rda |only mangoTraining-1.0-7/mangoTraining/data/dowJonesData.rda |only mangoTraining-1.0-7/mangoTraining/data/emaxData.rda |only mangoTraining-1.0-7/mangoTraining/data/messyData.rda |only mangoTraining-1.0-7/mangoTraining/data/missingPk.rda |only mangoTraining-1.0-7/mangoTraining/data/pkData.rda |only mangoTraining-1.0-7/mangoTraining/data/policyData.rda |only mangoTraining-1.0-7/mangoTraining/data/runData.rda |only mangoTraining-1.0-7/mangoTraining/data/tubeData.rda |only mangoTraining-1.0-7/mangoTraining/data/xpData.rda |only mangoTraining-1.0-7/mangoTraining/man/demoData.Rd |only mangoTraining-1.0-7/mangoTraining/man/dowJonesData.Rd |only mangoTraining-1.0-7/mangoTraining/man/emaxData.Rd |only mangoTraining-1.0-7/mangoTraining/man/emaxFun.Rd |only mangoTraining-1.0-7/mangoTraining/man/logisticFun.Rd |only mangoTraining-1.0-7/mangoTraining/man/messyData.Rd |only mangoTraining-1.0-7/mangoTraining/man/missingPk.Rd |only mangoTraining-1.0-7/mangoTraining/man/pkData.Rd |only mangoTraining-1.0-7/mangoTraining/man/policyData.Rd |only mangoTraining-1.0-7/mangoTraining/man/runData.Rd |only mangoTraining-1.0-7/mangoTraining/man/tubeData.Rd |only mangoTraining-1.0-7/mangoTraining/man/xpData.Rd |only mangoTraining-1.1/mangoTraining/DESCRIPTION | 48 +++- mangoTraining-1.1/mangoTraining/MD5 | 120 ++++++---- mangoTraining-1.1/mangoTraining/NAMESPACE | 4 mangoTraining-1.1/mangoTraining/R/data.R |only mangoTraining-1.1/mangoTraining/R/emax_fun.R |only mangoTraining-1.1/mangoTraining/R/logistic_fun.R |only mangoTraining-1.1/mangoTraining/R/mangoTraining-package.R | 6 mangoTraining-1.1/mangoTraining/data/auto_mpg.rda |only mangoTraining-1.1/mangoTraining/data/bbc_articles.rda |only mangoTraining-1.1/mangoTraining/data/bbc_articles_full.rda |only mangoTraining-1.1/mangoTraining/data/bbc_business_123.rda |only mangoTraining-1.1/mangoTraining/data/bbc_politics_123.rda |only mangoTraining-1.1/mangoTraining/data/body_image.rda |only mangoTraining-1.1/mangoTraining/data/book_sections.rda |only mangoTraining-1.1/mangoTraining/data/boston.rda |only mangoTraining-1.1/mangoTraining/data/breast_cancer.rda |only mangoTraining-1.1/mangoTraining/data/breast_cancer_clean_features.rda |only mangoTraining-1.1/mangoTraining/data/breast_cancer_clean_target.rda |only mangoTraining-1.1/mangoTraining/data/carriers.rda |only mangoTraining-1.1/mangoTraining/data/commute.rda |only mangoTraining-1.1/mangoTraining/data/datalist |only mangoTraining-1.1/mangoTraining/data/demoData.R |only mangoTraining-1.1/mangoTraining/data/demo_data.rda |only mangoTraining-1.1/mangoTraining/data/dowJonesData.R |only mangoTraining-1.1/mangoTraining/data/dow_jones_data.rda |only mangoTraining-1.1/mangoTraining/data/emaxData.R |only mangoTraining-1.1/mangoTraining/data/emax_data.rda |only mangoTraining-1.1/mangoTraining/data/messyData.R |only mangoTraining-1.1/mangoTraining/data/messy_data.rda |only mangoTraining-1.1/mangoTraining/data/missingPk.R |only mangoTraining-1.1/mangoTraining/data/missing_pk.rda |only mangoTraining-1.1/mangoTraining/data/pkData.R |only mangoTraining-1.1/mangoTraining/data/pk_data.rda |only mangoTraining-1.1/mangoTraining/data/policyData.R |only mangoTraining-1.1/mangoTraining/data/policy_data.rda |only mangoTraining-1.1/mangoTraining/data/runData.R |only mangoTraining-1.1/mangoTraining/data/run_data.rda |only mangoTraining-1.1/mangoTraining/data/students.rda |only mangoTraining-1.1/mangoTraining/data/tubeData.R |only mangoTraining-1.1/mangoTraining/data/tube_data.rda |only mangoTraining-1.1/mangoTraining/data/x_iris.rda |only mangoTraining-1.1/mangoTraining/data/xpData.R |only mangoTraining-1.1/mangoTraining/data/xp_data.rda |only mangoTraining-1.1/mangoTraining/data/y_iris.rda |only mangoTraining-1.1/mangoTraining/man/auto_mpg.Rd |only mangoTraining-1.1/mangoTraining/man/bbc_articles.Rd |only mangoTraining-1.1/mangoTraining/man/bbc_articles_full.Rd |only mangoTraining-1.1/mangoTraining/man/bbc_business_123.Rd |only mangoTraining-1.1/mangoTraining/man/bbc_politics_123.Rd |only mangoTraining-1.1/mangoTraining/man/body_image.Rd |only mangoTraining-1.1/mangoTraining/man/book_sections.Rd |only mangoTraining-1.1/mangoTraining/man/boston.Rd |only mangoTraining-1.1/mangoTraining/man/breast_cancer.Rd |only mangoTraining-1.1/mangoTraining/man/breast_cancer_clean_features.Rd |only mangoTraining-1.1/mangoTraining/man/breast_cancer_clean_target.Rd |only mangoTraining-1.1/mangoTraining/man/carriers.Rd |only mangoTraining-1.1/mangoTraining/man/commute.Rd |only mangoTraining-1.1/mangoTraining/man/demo_data.Rd |only mangoTraining-1.1/mangoTraining/man/dow_jones_data.Rd |only mangoTraining-1.1/mangoTraining/man/drugs.Rd | 11 mangoTraining-1.1/mangoTraining/man/emax_data.Rd |only mangoTraining-1.1/mangoTraining/man/emax_fun.Rd |only mangoTraining-1.1/mangoTraining/man/logistic_fun.Rd |only mangoTraining-1.1/mangoTraining/man/mangoTraining-package.Rd | 9 mangoTraining-1.1/mangoTraining/man/messy_data.Rd |only mangoTraining-1.1/mangoTraining/man/missing_pk.Rd |only mangoTraining-1.1/mangoTraining/man/pk_data.Rd |only mangoTraining-1.1/mangoTraining/man/policy_data.Rd |only mangoTraining-1.1/mangoTraining/man/qtpk2.Rd | 9 mangoTraining-1.1/mangoTraining/man/run_data.Rd |only mangoTraining-1.1/mangoTraining/man/students.Rd |only mangoTraining-1.1/mangoTraining/man/tube_data.Rd |only mangoTraining-1.1/mangoTraining/man/x_iris.Rd |only mangoTraining-1.1/mangoTraining/man/xp_data.Rd |only mangoTraining-1.1/mangoTraining/man/y_iris.Rd |only mangoTraining-1.1/mangoTraining/tests |only 112 files changed, 134 insertions(+), 73 deletions(-)
Title: Import Air Quality Monitoring Data in a Fast and Easy Way
Description: A collection of tools to access prepared air quality monitoring
data files from web servers with ease and speed. Air quality data are
sourced from open and publicly accessible repositories and can be found in
these locations:
<https://www.eea.europa.eu/data-and-maps/data/airbase-the-european-air-quality-database-8>
and <http://discomap.eea.europa.eu/map/fme/AirQualityExport.htm>. The web
server space has been provided by Ricardo Energy & Environment.
Author: Stuart K. Grange [cre, aut] (<https://orcid.org/0000-0003-4093-3596>)
Maintainer: Stuart K. Grange <stuart.grange@york.ac.uk>
Diff between saqgetr versions 0.1.19 dated 2020-01-09 and 0.2.0 dated 2020-06-03
DESCRIPTION | 10 +++++----- MD5 | 12 +++++++----- NEWS.md |only R/get_saq_observations.R | 5 ++++- R/get_saq_processes.R | 4 ++++ man/figures |only man/get_saq_observations.Rd | 2 +- man/get_saq_processes.Rd | 4 ++++ 8 files changed, 25 insertions(+), 12 deletions(-)
Title: Dyadic Mixed Model for Pedigree Data
Description: Dyadic mixed model analysis with multi-trait responses and
pedigree-based partitioning of individual variation into a range of
environmental and genetic variance components for individual and
maternal effects. Method documented in dmmOverview.pdf; it is an
implementation of dispersion mean model described by
Searle et al. (1992) "Variance Components", Wiley, NY.
Author: Neville Jackson
Maintainer: Neville Jackson <nanddjackson@bigpond.com>
Diff between dmm versions 2.1-5 dated 2018-07-16 and 2.1-6 dated 2020-06-03
DESCRIPTION | 12 ++- MD5 | 16 ++--- NAMESPACE | 2 R/dmm-internal.R | 128 ------------------------------------------ inst/doc/bugs.txt | 2 inst/doc/dmmClassSpecific.pdf |binary inst/doc/dmmOverview.pdf |binary inst/doc/mods.txt | 4 + man/dmm-package.Rd | 4 - 9 files changed, 25 insertions(+), 143 deletions(-)
Title: Asynchronous Disk-Based Representation of Massive Data
Description: Storing very large data objects on a local drive, while still making it possible to manipulate the data in an efficient manner.
Author: Martijn Schuemie [aut, cre],
Marc A. Suchard [aut],
Observational Health Data Science and Informatics [cph]
Maintainer: Martijn Schuemie <schuemie@ohdsi.org>
Diff between Andromeda versions 0.2.0 dated 2020-05-20 and 0.3.1 dated 2020-06-03
DESCRIPTION | 10 +-- MD5 | 33 +++++------ NAMESPACE | 3 + NEWS.md | 42 ++++++++++++-- R/Andromeda.R | 4 + R/LoadingSaving.R | 112 +++++++++++++++++++++++++++++++++++++-- R/Object.R | 31 +++++++++- R/Operations.R | 43 ++++++++++---- build/vignette.rds |binary inst/doc/UsingAndromeda.pdf |binary man/batchApply.Rd | 8 +- man/getAndromedaTempDiskSpace.Rd |only man/groupApply.Rd | 12 +++- man/isAndromeda.Rd | 40 ++++++------- man/restoreDate.Rd | 68 +++++++++++------------ man/restorePosixct.Rd | 72 ++++++++++++------------- tests/testthat/test-batching.R | 30 ++++++++++ tests/testthat/test-object.R | 24 ++++++++ 18 files changed, 388 insertions(+), 144 deletions(-)
Title: Strided Iterator and Range
Description: The strided iterator adapts multidimensional buffers to work with
the C++ standard library and range-based for-loops. Given a pointer or iterator
into a multidimensional data buffer, one can generate an iterator range using
make_strided to construct strided versions of the standard library's begin and
end. For constructing range-based for-loops, a strided_range class is provided.
These help authors to avoid integer-based indexing, which in some cases can impede
algorithm performance and introduce indexing errors. This library exists
primarily to expose the header file to other R projects.
Author: Tim Keitt [aut, cre]
Maintainer: Tim Keitt <tkeitt@gmail.com>
Diff between strider versions 1.2 dated 2019-01-26 and 1.3 dated 2020-06-03
DESCRIPTION | 13 MD5 | 12 build/vignette.rds |binary inst/doc/strider.R | 6 inst/doc/strider.Rmd | 9 inst/doc/strider.html | 905 +++++++++++++++++++++++++++++++------------------- vignettes/strider.Rmd | 9 7 files changed, 606 insertions(+), 348 deletions(-)
Title: A Method to Download Department of Education College Scorecard
Data
Description: A method to download Department of Education College
Scorecard data using the public API
<https://collegescorecard.ed.gov/data/documentation/>. It is based on
the 'dplyr' model of piped commands to select and filter data in a
single chained function call. An API key from the U.S. Department of
Education is required.
Author: Benjamin Skinner [aut, cre] (<https://orcid.org/0000-0002-0337-7415>)
Maintainer: Benjamin Skinner <btskinner@coe.ufl.edu>
Diff between rscorecard versions 0.15.0 dated 2020-04-09 and 0.16.0 dated 2020-06-03
DESCRIPTION | 6 +++--- MD5 | 4 ++-- R/sysdata.rda |binary 3 files changed, 5 insertions(+), 5 deletions(-)
Title: Datasets to Align Financial Markets with Climate Goals
Description: These datasets support the implementation in R of
the software 'PACTA' (Paris Agreement Capital Transition Assessment),
which is a free tool that calculates the alignment between financial
assets and climate scenarios (<https://2degrees-investing.org/>).
Financial institutions use 'PACTA' to study how their capital
allocation impacts the climate. Because both financial institutions
and market data providers keep their data private, this package
provides fake, public data to enable the development and use of
'PACTA' in R.
Author: Mauro Lepore [aut, cre, ctr] (<https://orcid.org/0000-0002-1986-7988>),
Jackson Hoffart [aut, dtc] (<https://orcid.org/0000-0002-8600-5042>),
Klaus Hagedorn [aut],
2 Degrees Investing Initiative [cph, fnd]
Maintainer: Mauro Lepore <maurolepore@gmail.com>
Diff between r2dii.data versions 0.0.3 dated 2020-03-25 and 0.1.0 dated 2020-06-03
r2dii.data-0.0.3/r2dii.data/man/classification_bridge.Rd |only r2dii.data-0.1.0/r2dii.data/DESCRIPTION | 12 - r2dii.data-0.1.0/r2dii.data/MD5 | 110 ++++++---- r2dii.data-0.1.0/r2dii.data/NEWS.md |only r2dii.data-0.1.0/r2dii.data/R/ald_demo.R | 25 -- r2dii.data-0.1.0/r2dii.data/R/classification_bridge.R | 70 +++--- r2dii.data-0.1.0/r2dii.data/R/co2_intensity_scenario_demo.R |only r2dii.data-0.1.0/r2dii.data/R/data_dictionary.R | 11 - r2dii.data-0.1.0/r2dii.data/R/iso_codes.R | 8 r2dii.data-0.1.0/r2dii.data/R/loanbook_demo.R | 46 ---- r2dii.data-0.1.0/r2dii.data/R/overwrite_demo.R | 13 - r2dii.data-0.1.0/r2dii.data/R/r2dii.data-package.R |only r2dii.data-0.1.0/r2dii.data/R/region_isos.R | 8 r2dii.data-0.1.0/r2dii.data/R/region_isos_demo.R |only r2dii.data-0.1.0/r2dii.data/R/scenario_demo_2020.R |only r2dii.data-0.1.0/r2dii.data/R/sector_classifications.R | 12 - r2dii.data-0.1.0/r2dii.data/R/utils.R |only r2dii.data-0.1.0/r2dii.data/README.md | 46 ++-- r2dii.data-0.1.0/r2dii.data/data/ald_demo.rda |binary r2dii.data-0.1.0/r2dii.data/data/co2_intensity_scenario_demo.rda |only r2dii.data-0.1.0/r2dii.data/data/data_dictionary.rda |binary r2dii.data-0.1.0/r2dii.data/data/isic_classification.rda |binary r2dii.data-0.1.0/r2dii.data/data/iso_codes.rda |binary r2dii.data-0.1.0/r2dii.data/data/loanbook_demo.rda |binary r2dii.data-0.1.0/r2dii.data/data/nace_classification.rda |binary r2dii.data-0.1.0/r2dii.data/data/naics_classification.rda |binary r2dii.data-0.1.0/r2dii.data/data/overwrite_demo.rda |binary r2dii.data-0.1.0/r2dii.data/data/region_isos.rda |binary r2dii.data-0.1.0/r2dii.data/data/region_isos_demo.rda |only r2dii.data-0.1.0/r2dii.data/data/scenario_demo_2020.rda |only r2dii.data-0.1.0/r2dii.data/data/sector_classifications.rda |binary r2dii.data-0.1.0/r2dii.data/inst/WORDLIST | 13 + r2dii.data-0.1.0/r2dii.data/man/ald_demo.Rd | 47 ++-- r2dii.data-0.1.0/r2dii.data/man/co2_intensity_scenario_demo.Rd |only r2dii.data-0.1.0/r2dii.data/man/data_dictionary.Rd | 19 + r2dii.data-0.1.0/r2dii.data/man/isic_classification.Rd |only r2dii.data-0.1.0/r2dii.data/man/iso_codes.Rd | 15 - r2dii.data-0.1.0/r2dii.data/man/loanbook_demo.Rd | 74 ++---- r2dii.data-0.1.0/r2dii.data/man/nace_classification.Rd |only r2dii.data-0.1.0/r2dii.data/man/naics_classification.Rd |only r2dii.data-0.1.0/r2dii.data/man/overwrite_demo.Rd | 27 +- r2dii.data-0.1.0/r2dii.data/man/r2dii.data-package.Rd |only r2dii.data-0.1.0/r2dii.data/man/region_isos.Rd | 18 + r2dii.data-0.1.0/r2dii.data/man/region_isos_demo.Rd |only r2dii.data-0.1.0/r2dii.data/man/scenario_demo_2020.Rd |only r2dii.data-0.1.0/r2dii.data/man/sector_classifications.Rd | 26 +- r2dii.data-0.1.0/r2dii.data/tests/testthat/ref-ald_demo |binary r2dii.data-0.1.0/r2dii.data/tests/testthat/ref-co2_intensity_scenario_demo |only r2dii.data-0.1.0/r2dii.data/tests/testthat/ref-data_dictionary |binary r2dii.data-0.1.0/r2dii.data/tests/testthat/ref-iso_codes |binary r2dii.data-0.1.0/r2dii.data/tests/testthat/ref-loanbook_demo |binary r2dii.data-0.1.0/r2dii.data/tests/testthat/ref-overwrite_demo |binary r2dii.data-0.1.0/r2dii.data/tests/testthat/ref-region_isos |binary r2dii.data-0.1.0/r2dii.data/tests/testthat/ref-region_isos_demo |only r2dii.data-0.1.0/r2dii.data/tests/testthat/ref-scenario_demo_2020 |only r2dii.data-0.1.0/r2dii.data/tests/testthat/ref-sector_classifications |binary r2dii.data-0.1.0/r2dii.data/tests/testthat/test-ald_demo.R | 5 r2dii.data-0.1.0/r2dii.data/tests/testthat/test-all.R |only r2dii.data-0.1.0/r2dii.data/tests/testthat/test-classification_bridge.R | 4 r2dii.data-0.1.0/r2dii.data/tests/testthat/test-co2_intensity_scenario_demo.R |only r2dii.data-0.1.0/r2dii.data/tests/testthat/test-data_dictionary.R | 10 r2dii.data-0.1.0/r2dii.data/tests/testthat/test-iso_codes.R | 5 r2dii.data-0.1.0/r2dii.data/tests/testthat/test-loanbook_demo.R | 5 r2dii.data-0.1.0/r2dii.data/tests/testthat/test-overwrite_demo.R | 5 r2dii.data-0.1.0/r2dii.data/tests/testthat/test-region_isos.R | 5 r2dii.data-0.1.0/r2dii.data/tests/testthat/test-region_isos_demo.R |only r2dii.data-0.1.0/r2dii.data/tests/testthat/test-scenario_demo.R |only r2dii.data-0.1.0/r2dii.data/tests/testthat/test-sector_classifications.R | 5 68 files changed, 334 insertions(+), 310 deletions(-)
Title: Qualitative Comparative Analysis
Description: An extensive set of functions to perform Qualitative Comparative Analysis:
crisp sets ('csQCA'), temporal ('tQCA'), multi-value ('mvQCA')
and fuzzy sets ('fsQCA'), using a GUI - graphical user interface.
'QCA' is a methodology that bridges the qualitative and quantitative divide
in social science research. It uses a Boolean algorithm that results in a
minimal causal combination that explains a given phenomenon.
Author: Adrian Dusa [aut, cre, cph] (<https://orcid.org/0000-0002-3525-9253>),
Ciprian Paduraru [ctb] (<https://orcid.org/0000-0002-4518-374X>),
jQuery Foundation [cph] (jQuery library and jQuery UI library),
jQuery contributors [ctb, cph] (jQuery library; authors listed in
inst/gui/www/lib/jquery-AUTHORS.txt),
lp_solve [cph] (http://lpsolve.sourceforge.net),
Vasil Dinkov [ctb, cph] (jquery.smartmenus.js library),
Dmitry Baranovskiy [ctb, cph] (raphael.js library),
Emmanuel Quentin [ctb, cph] (raphael.inline_text_editing.js library),
Jimmy Breck-McKye [ctb, cph] (raphael-paragraph.js library),
Alrik Thiem [aut] (from version 1.0-0 up to version 1.1-3)
Maintainer: Adrian Dusa <dusa.adrian@unibuc.ro>
Diff between QCA versions 3.8.1 dated 2020-05-29 and 3.8.2 dated 2020-06-03
DESCRIPTION | 8 +-- MD5 | 68 +++++++++++++------------- inst/gui/www/js/maincode.js | 2 inst/staticdocs/CV.html | 4 - inst/staticdocs/LegacyDatasets.html | 4 - inst/staticdocs/Lipset.html | 4 - inst/staticdocs/QCA.package.html | 8 +-- inst/staticdocs/RS.html | 4 - inst/staticdocs/SOPexpressions.html | 4 - inst/staticdocs/XYplot.html | 4 - inst/staticdocs/Xplot.html | 4 - inst/staticdocs/calibrate.html | 4 - inst/staticdocs/causalChain.html | 4 - inst/staticdocs/chartFunctions.html | 4 - inst/staticdocs/export.html | 4 - inst/staticdocs/factorize.html | 4 - inst/staticdocs/findRows.html | 4 - inst/staticdocs/findTh.html | 4 - inst/staticdocs/fuzzyops.html | 4 - inst/staticdocs/generate.html | 4 - inst/staticdocs/implicantMatrixFunctions.html | 4 - inst/staticdocs/index.html | 4 - inst/staticdocs/intersection.html | 4 - inst/staticdocs/minimize.html | 4 - inst/staticdocs/modelFit.html | 4 - inst/staticdocs/negate.html | 4 - inst/staticdocs/pof.html | 4 - inst/staticdocs/recode.html | 4 - inst/staticdocs/retention.html | 4 - inst/staticdocs/runGUI.html | 4 - inst/staticdocs/subsetsAndSupersets.html | 4 - inst/staticdocs/truthTable.html | 4 - man/QCA.package.Rd | 4 - src/Makevars | 2 src/lpsolve/Makefile | 2 35 files changed, 103 insertions(+), 103 deletions(-)
Title: R at the Command-Line via 'r'
Description: A scripting and command-line front-end
is provided by 'r' (aka 'littler') as a lightweight binary wrapper around
the GNU R language and environment for statistical computing and graphics.
While R can be used in batch mode, the r binary adds full support for
both 'shebang'-style scripting (i.e. using a hash-mark-exclamation-path
expression as the first line in scripts) as well as command-line use in
standard Unix pipelines. In other words, r provides the R language without
the environment.
Author: Dirk Eddelbuettel and Jeff Horner
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between littler versions 0.3.9 dated 2019-10-27 and 0.3.10 dated 2020-06-03
ChangeLog | 64 +++++++++++++++++++++++++++++++++++++- DESCRIPTION | 8 ++-- MD5 | 42 +++++++++++++----------- build/vignette.rds |binary configure | 20 ++++++----- configure.ac | 5 +- inst/NEWS.Rd | 23 +++++++++++++ inst/doc/littler-examples.html | 55 +++++++++++++++++++++----------- inst/doc/littler-faq.Rmd | 2 - inst/doc/littler-faq.html | 29 ++++++++++++++--- inst/examples/getRStudioDesktop.r | 5 +- inst/examples/getRStudioServer.r | 5 +- inst/examples/install.r | 5 ++ inst/examples/install2.r | 6 ++- inst/examples/installBioc.r |only inst/examples/installGithub.r | 3 + inst/examples/installRepo.r | 3 + inst/examples/ncroxy.r |only inst/examples/rcc.r | 2 + inst/examples/roxy.r | 36 +++++++++++++++++++-- inst/examples/tt.r | 2 + inst/examples/update.r | 8 ++++ vignettes/littler-faq.Rmd | 2 - 23 files changed, 253 insertions(+), 72 deletions(-)
Title: Idiograms with Marks and Karyotype Indices
Description: Plot idiograms of karyotypes, plasmids, circular chr. having a set of data.frames
for chromosome data and optionally mark data. Two styles of chromosomes can be used: without or with
visible chromatids (when not circular).
Supports micrometers, cM and Mb or any unit. Two styles of centromeres are available: triangular and rounded;
and seven styles of marks: square, dots, cM, cMLeft, cenStyle, upArrow, downArrow;
its legend (label) can be drawn inline or to the right of karyotypes. Idiograms can also be plotted in
concentric circles. It is possible to calculate chromosome indices by Levan et al. (1964)
<doi:10.1111/j.1601-5223.1964.tb01953.x>, karyotype indices of Watanabe et al. (1999)
<doi:10.1007/PL00013869> and Romero-Zarco (1986) <doi:10.2307/1221906> and classify chromosomes
by morphology Guerra (1986) and Levan et al. (1964).
Author: Fernando Roa [aut, cre],
Mariana PC Telles [ctb]
Maintainer: Fernando Roa <froao@unal.edu.co>
Diff between idiogramFISH versions 1.14.11 dated 2020-04-30 and 1.15.1 dated 2020-06-03
idiogramFISH-1.14.11/idiogramFISH/R/mapXYCen.R |only idiogramFISH-1.14.11/idiogramFISH/man/figures/README-unnamed-chunk-18-1.png |only idiogramFISH-1.14.11/idiogramFISH/man/figures/crandownload.svg |only idiogramFISH-1.14.11/idiogramFISH/man/figures/donate2.svg |only idiogramFISH-1.14.11/idiogramFISH/man/figures/donateweek.svg |only idiogramFISH-1.14.11/idiogramFISH/man/figures/firstplot2.png |only idiogramFISH-1.14.11/idiogramFISH/man/figures/secondplot2.png |only idiogramFISH-1.14.11/idiogramFISH/man/figures/thirdplot2.png |only idiogramFISH-1.14.11/idiogramFISH/man/mapXYCen.Rd |only idiogramFISH-1.14.11/idiogramFISH/vignettes/dfOfChrSize.png |only idiogramFISH-1.15.1/idiogramFISH/DESCRIPTION | 17 idiogramFISH-1.15.1/idiogramFISH/MD5 | 149 idiogramFISH-1.15.1/idiogramFISH/NEWS.md | 26 idiogramFISH-1.15.1/idiogramFISH/R/arrowPlotMark.R | 6 idiogramFISH-1.15.1/idiogramFISH/R/cMPlotMark.R | 10 idiogramFISH-1.15.1/idiogramFISH/R/genBankReadIF.R | 1 idiogramFISH-1.15.1/idiogramFISH/R/makedfMarkColor.R | 27 idiogramFISH-1.15.1/idiogramFISH/R/mapXY.R | 399 + idiogramFISH-1.15.1/idiogramFISH/R/mapXYCenMimic.R |only idiogramFISH-1.15.1/idiogramFISH/R/mimicCenPlotMark.R | 265 - idiogramFISH-1.15.1/idiogramFISH/R/orientation.R | 353 - idiogramFISH-1.15.1/idiogramFISH/R/plotDotMarks.R | 5 idiogramFISH-1.15.1/idiogramFISH/R/plotIdiograms.R | 2548 +++++++--- idiogramFISH-1.15.1/idiogramFISH/R/roundPlotMark.R | 121 idiogramFISH-1.15.1/idiogramFISH/R/textLabel.R | 106 idiogramFISH-1.15.1/idiogramFISH/R/textLabelDots.R | 11 idiogramFISH-1.15.1/idiogramFISH/README.md | 972 +++ idiogramFISH-1.15.1/idiogramFISH/inst/doc/AplotIdiogramsVig.R | 118 idiogramFISH-1.15.1/idiogramFISH/inst/doc/AplotIdiogramsVig.Rmd | 120 idiogramFISH-1.15.1/idiogramFISH/inst/doc/AplotIdiogramsVig.html | 467 - idiogramFISH-1.15.1/idiogramFISH/inst/doc/BcircularVig.R | 8 idiogramFISH-1.15.1/idiogramFISH/inst/doc/BcircularVig.Rmd | 8 idiogramFISH-1.15.1/idiogramFISH/inst/doc/BcircularVig.html | 14 idiogramFISH-1.15.1/idiogramFISH/inst/doc/DphylogenyVig.R | 11 idiogramFISH-1.15.1/idiogramFISH/inst/doc/DphylogenyVig.Rmd | 11 idiogramFISH-1.15.1/idiogramFISH/inst/doc/DphylogenyVig.html | 532 +- idiogramFISH-1.15.1/idiogramFISH/inst/doc/EhumanVig.R | 4 idiogramFISH-1.15.1/idiogramFISH/inst/doc/EhumanVig.Rmd | 4 idiogramFISH-1.15.1/idiogramFISH/inst/doc/EhumanVig.html | 10 idiogramFISH-1.15.1/idiogramFISH/inst/doc/index.R | 35 idiogramFISH-1.15.1/idiogramFISH/inst/doc/index.Rmd | 39 idiogramFISH-1.15.1/idiogramFISH/inst/doc/index.html | 18 idiogramFISH-1.15.1/idiogramFISH/man/arrowPlotMark.Rd | 4 idiogramFISH-1.15.1/idiogramFISH/man/cMPlotMark.Rd | 1 idiogramFISH-1.15.1/idiogramFISH/man/chrbasicdataHolo.Rd | 12 idiogramFISH-1.15.1/idiogramFISH/man/chrbasicdatamono.Rd | 16 idiogramFISH-1.15.1/idiogramFISH/man/dfMarkStyle.Rd | 10 idiogramFISH-1.15.1/idiogramFISH/man/figures/NEWS.svg | 2 idiogramFISH-1.15.1/idiogramFISH/man/figures/README-example-1.png |binary idiogramFISH-1.15.1/idiogramFISH/man/figures/README-example2-1.png |binary idiogramFISH-1.15.1/idiogramFISH/man/figures/README-unnamed-chunk-16-1.png |binary idiogramFISH-1.15.1/idiogramFISH/man/figures/README-unnamed-chunk-17-1.png |binary idiogramFISH-1.15.1/idiogramFISH/man/figures/cranmanualbookdown.svg | 2 idiogramFISH-1.15.1/idiogramFISH/man/figures/cranversion.svg | 16 idiogramFISH-1.15.1/idiogramFISH/man/figures/develmanualpkgdown.svg | 2 idiogramFISH-1.15.1/idiogramFISH/man/figures/develmanualvignette.svg | 2 idiogramFISH-1.15.1/idiogramFISH/man/figures/gitbadge.svg | 2 idiogramFISH-1.15.1/idiogramFISH/man/figures/kofi1.png |only idiogramFISH-1.15.1/idiogramFISH/man/figures/logo.png |binary idiogramFISH-1.15.1/idiogramFISH/man/figures/manual.svg | 2 idiogramFISH-1.15.1/idiogramFISH/man/figures/pkgdownver.svg | 2 idiogramFISH-1.15.1/idiogramFISH/man/figures/readme.svg | 2 idiogramFISH-1.15.1/idiogramFISH/man/figures/realdownloads.svg | 2 idiogramFISH-1.15.1/idiogramFISH/man/genBankReadIF.Rd | 2 idiogramFISH-1.15.1/idiogramFISH/man/idiogramFISH-package.Rd | 7 idiogramFISH-1.15.1/idiogramFISH/man/mapXY.Rd | 10 idiogramFISH-1.15.1/idiogramFISH/man/mapXYCenMimic.Rd |only idiogramFISH-1.15.1/idiogramFISH/man/markdataholo.Rd | 12 idiogramFISH-1.15.1/idiogramFISH/man/markposDFs.Rd | 18 idiogramFISH-1.15.1/idiogramFISH/man/mimicCenPlotMark.Rd | 23 idiogramFISH-1.15.1/idiogramFISH/man/plotDotMarks.Rd | 1 idiogramFISH-1.15.1/idiogramFISH/man/plotIdiograms.Rd | 63 idiogramFISH-1.15.1/idiogramFISH/man/roundPlotMark.Rd | 5 idiogramFISH-1.15.1/idiogramFISH/man/textLabel.Rd | 1 idiogramFISH-1.15.1/idiogramFISH/man/textLabelDots.Rd | 1 idiogramFISH-1.15.1/idiogramFISH/man/yVertoHor.Rd | 18 idiogramFISH-1.15.1/idiogramFISH/vignettes/AplotIdiogramsVig.Rmd | 120 idiogramFISH-1.15.1/idiogramFISH/vignettes/BcircularVig.Rmd | 8 idiogramFISH-1.15.1/idiogramFISH/vignettes/DphylogenyVig.Rmd | 11 idiogramFISH-1.15.1/idiogramFISH/vignettes/EhumanVig.Rmd | 4 idiogramFISH-1.15.1/idiogramFISH/vignettes/index.Rmd | 39 idiogramFISH-1.15.1/idiogramFISH/vignettes/refs/packages.bib | 2 82 files changed, 4828 insertions(+), 2009 deletions(-)
Title: Geographic Information of Uruguay
Description: The toolbox have functions to load and process geographic information for Uruguay.
And extra-function to get address coordinates and orthophotos through the uruguayan 'IDE' API <https://www.gub.uy/infraestructura-datos-espaciales/tramites-y-servicios/servicios/servicio-direcciones-geograficas>.
Author: Richard Detomasi [aut, cre] (<https://orcid.org/0000-0002-6725-0261>),
Ministerio de Desarrollo Social, Uruguay (MIDES) [dtc],
Infraestrutura de Datos Espaciales, Uruguay (IDE) [dtc],
Servicio Geográfico Militar, Uruguay (SGM) [dtc],
Ministerio de Transporte y Obras Públicas, Uruguay (MTOP) [dtc],
Instituto Nacional de Estadística, Uruguay (INE) [dtc],
Instituto Geográfico Militar, Uruguay (IGM) [dtc],
Ministerio de Vivienda, Ordenamiento Territorial y Medio Ambiente,
Uruguay (MVOTMA) [dtc]
Maintainer: Richard Detomasi <richard.detomasi@gmail.com>
Diff between geouy versions 0.1.9 dated 2020-03-26 and 0.2.1 dated 2020-06-03
geouy-0.1.9/geouy/R/tiles_ide_uy.R |only geouy-0.1.9/geouy/man/tiles_ide_uy.Rd |only geouy-0.1.9/geouy/tests |only geouy-0.2.1/geouy/DESCRIPTION | 17 ++++----- geouy-0.2.1/geouy/MD5 | 43 +++++++++------------- geouy-0.2.1/geouy/NAMESPACE | 37 +------------------ geouy-0.2.1/geouy/NEWS.md | 11 +++++ geouy-0.2.1/geouy/R/geocode_ide_uy.R | 36 +++++++++++-------- geouy-0.2.1/geouy/R/load_geouy.R | 12 +++--- geouy-0.2.1/geouy/R/plot_geouy.R | 44 +++++++++++------------ geouy-0.2.1/geouy/R/utils.R | 60 ++++++++++++++++++++------------ geouy-0.2.1/geouy/R/which_uy.R | 22 +++++------ geouy-0.2.1/geouy/README.md | 6 +-- geouy-0.2.1/geouy/inst/doc/geouy.R | 30 ++++++++-------- geouy-0.2.1/geouy/inst/doc/geouy.Rmd | 25 ++++++------- geouy-0.2.1/geouy/inst/doc/geouy.html | 43 +++++++++++----------- geouy-0.2.1/geouy/man/geocode_ide_uy.Rd | 4 +- geouy-0.2.1/geouy/man/metadata.Rd | 6 ++- geouy-0.2.1/geouy/man/pipe.Rd |only geouy-0.2.1/geouy/man/plot_geouy.Rd | 8 ++-- geouy-0.2.1/geouy/vignettes/geouy.Rmd | 25 ++++++------- 21 files changed, 213 insertions(+), 216 deletions(-)
Title: Interactive Interface to Data Envelopment Analysis Modeling
Description: Allows the user to execute interactively radial data envelopment analysis models. The user has the ability to upload a data frame,
select the input/output variables, choose the technology assumption to adopt and decide whether to run an input or an output oriented model.
When the model is executed a set of results are displayed which include efficiency scores, peers' determination, scale efficiencies' evaluation
and slacks' calculation. Fore more information about the theoretical background of the package,
please refer to Bogetoft & Otto (2011) <doi:10.1007/978-1-4419-7961-2>.
Author: Mohamed El Fodil Ihaddaden
Maintainer: Mohamed El Fodil Ihaddaden <ihaddaden.fodeil@gmail.com>
Diff between farrell versions 0.1.0 dated 2020-06-02 and 0.2.0 dated 2020-06-03
DESCRIPTION | 6 +++--- MD5 | 4 ++-- R/farrell.R | 54 +++++++++++++++++++++++++++++++++++++++++++++++++++++- 3 files changed, 58 insertions(+), 6 deletions(-)
Title: Testing Infrastructure for Broom Model Generics
Description: Provides a number of testthat tests that can be
used to verify that tidy(), glance() and augment() methods meet
consistent specifications. This allows methods for the same generic to
be spread across multiple packages, since all of those packages can
make the same guarantees to users about returned objects.
Author: Alex Hayes [aut, cre] (<https://orcid.org/0000-0002-4985-5160>),
Simon Couch [ctb]
Maintainer: Alex Hayes <alexpghayes@gmail.com>
Diff between modeltests versions 0.1.1 dated 2020-04-14 and 0.1.2 dated 2020-06-03
DESCRIPTION | 31 ++++++++++++++++++------------- MD5 | 20 ++++++++++---------- NEWS.md | 9 +++++++++ data/argument_glossary.rda |binary data/column_glossary.rda |binary man/argument_glossary.Rd | 6 ++++-- man/check_augment_data_specification.Rd | 3 +-- man/check_augment_function.Rd | 3 +-- man/check_single_augment_output.Rd | 3 +-- man/column_glossary.Rd | 6 ++++-- man/modeltests-package.Rd | 2 +- 11 files changed, 49 insertions(+), 34 deletions(-)
Title: Drug Repurposing: Integration and Systematic Investigation of
Genomic High Throughput Data
Description: This is a connectivity mapping-based drug repurposing tool that identifies drugs that can potentially reverse query disease phenotype or have similar functions with query drugs.
Author: Jinyan Chan [aut, cre], Jinghua Gu [aut]
Maintainer: Jinyan Chan <Jinyan_Chan@baylor.edu>
Diff between DrInsight versions 0.1.1 dated 2018-04-18 and 0.1.2 dated 2020-06-03
DESCRIPTION | 8 MD5 | 24 +- build/vignette.rds |binary inst/doc/my-vignette.R | 4 inst/doc/my-vignette.Rmd | 2 inst/doc/my-vignette.html | 403 ++++++++++++++++++++++++++++++++---------- man/CEG.network.graph.Rd | 10 - man/drug.ident.Rd | 10 - man/get.cmap.ref.Rd | 3 man/make.cytoscape.network.Rd | 6 man/network.graph.Rd | 11 - man/pathway.analysis.Rd | 9 vignettes/my-vignette.Rmd | 2 13 files changed, 368 insertions(+), 124 deletions(-)
Title: Interface to Download Meteorological (and Hydrological) Datasets
Description: Automatize downloading of meteorological and hydrological data from publicly available repositories:
OGIMET (<http://ogimet.com/index.phtml.en>),
University of Wyoming - atmospheric vertical profiling data (<http://weather.uwyo.edu/upperair>),
Polish Institute of Meterology and Water Management - National Research Institute (<https://dane.imgw.pl>),
and National Oceanic & Atmospheric Administration (NOAA).
This package also allows for adding geographical coordinates for each observation.
Author: Bartosz Czernecki [aut, cre] (<https://orcid.org/0000-0001-6496-1386>),
Arkadiusz Głogowski [aut] (<https://orcid.org/0000-0002-7587-8892>),
Jakub Nowosad [aut] (<https://orcid.org/0000-0002-1057-3721>),
IMGW-PIB [ctb] (source of the data)
Maintainer: Bartosz Czernecki <nwp@amu.edu.pl>
Diff between climate versions 0.9.5 dated 2020-05-05 and 0.9.6 dated 2020-06-03
DESCRIPTION | 6 MD5 | 37 ++-- NAMESPACE | 5 NEWS.md | 4 R/clean_metadata_meteo.R | 3 R/hydro_imgw_annual.R | 2 R/hydro_imgw_daily.R | 2 R/hydro_imgw_monthly.R | 2 R/meteo_imgw_daily.R | 13 + R/meteo_imgw_hourly.R | 2 R/meteo_imgw_monthly.R | 2 R/meteo_noaa_hourly.R | 1 R/nearest_stations_imgw.R |only R/nearest_stations_noaa.R |only R/onAttach.R |only README.md | 12 - inst/doc/getstarted.R | 4 inst/doc/getstarted.Rmd | 6 inst/doc/getstarted.html | 336 +++++++++++++++++++++---------------------- man/nearest_stations_imgw.Rd |only man/nearest_stations_nooa.Rd |only vignettes/getstarted.Rmd | 6 22 files changed, 233 insertions(+), 210 deletions(-)