Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-05-25 1.0.0
Title: Functions to Analyze Single System Data
Description: Functions to visually and statistically analyze single system data.
Author: Charles Auerbach [aut, cre],
Wendy Zeitlin [aut]
Maintainer: Charles Auerbach <auerbach@yu.edu>
Diff between SSDforR versions 1.5.15 dated 2020-04-19 and 1.5.16 dated 2020-06-09
DESCRIPTION | 8 ++++---- MD5 | 8 ++++++-- R/RMGline.R |only R/RMstat.R |only man/Gline.Rd | 15 ++++++++++----- man/RMGline.Rd |only man/RMstat.Rd |only 7 files changed, 20 insertions(+), 11 deletions(-)
Title: Abstractions for Promise-Based Asynchronous Programming
Description: Provides fundamental abstractions for doing asynchronous programming
in R using promises. Asynchronous programming is useful for allowing a single
R process to orchestrate multiple tasks in the background while also attending
to something else. Semantics are similar to 'JavaScript' promises, but with a
syntax that is idiomatic R.
Author: Joe Cheng [aut, cre],
RStudio [cph, fnd]
Maintainer: Joe Cheng <joe@rstudio.com>
Diff between promises versions 1.1.0 dated 2019-10-04 and 1.1.1 dated 2020-06-09
DESCRIPTION | 8 MD5 | 40 - NEWS.md | 9 R/pipe.R | 2 R/promise.R | 14 README.md | 4 build/vignette.rds |binary inst/doc/casestudy.Rmd | 4 inst/doc/casestudy.html | 1309 +++++++++++++++++++++++---------------------- inst/doc/combining.html | 698 ++++++++++------------- inst/doc/futures.html | 497 ++++++----------- inst/doc/intro.html | 843 ++++++++++++++++------------ inst/doc/motivation.html | 351 +++++------- inst/doc/overview.html | 854 ++++++++++++++--------------- inst/doc/shiny.html | 900 ++++++++++++++---------------- man/pipes.Rd | 2 man/promise.Rd | 2 man/promise_all.Rd | 4 man/then.Rd | 16 man/with_promise_domain.Rd | 11 vignettes/casestudy.Rmd | 4 21 files changed, 2687 insertions(+), 2885 deletions(-)
Title: Load Data From 'Yandex Direct'
Description: Load data from 'Yandex Direct' API V5
<https://tech.yandex.ru/direct/doc/dg/concepts/about-docpage/> into R.
Provide function for load lists of campaings, ads, keywords and other
objects from 'Yandex Direct' account. Also you can load statistic from
API 'Reports Service' <https://tech.yandex.ru/direct/doc/reports/reports-docpage/>.
And allows keyword bids management.
Author: Alexey Seleznev [aut, cre] (<https://orcid.org/0000-0003-0410-7385>)
Maintainer: Alexey Seleznev <selesnow@gmail.com>
Diff between ryandexdirect versions 3.5.0 dated 2020-05-06 and 3.6.0 dated 2020-06-09
DESCRIPTION | 19 - MD5 | 60 ++--- NAMESPACE | 5 NEWS.md | 18 + R/tech_block.R | 2 R/yadirGetCostData.R |only R/yadirGetForecast.R | 2 R/yadirGetReport.R | 8 R/yadirGetReportFun.R | 34 +- R/yadirSetAgencyAccount.R | 43 ++- R/yadirSetLogin.R | 15 + R/zzz.R | 5 README.md | 10 build/partial.rdb |binary build/vignette.rds |binary inst/doc/yandex-direct-auth.R | 9 inst/doc/yandex-direct-auth.Rmd | 94 +++++++- inst/doc/yandex-direct-auth.html | 176 ++++++++++++++- inst/doc/yandex-direct-cost-data.R |only inst/doc/yandex-direct-cost-data.Rmd |only inst/doc/yandex-direct-cost-data.html |only inst/doc/yandex-direct-get-statistic.Rmd | 2 inst/doc/yandex-direct-get-statistic.html | 162 +++++++------- inst/doc/yandex-direct-get-wordstat-forecast.Rmd | 5 inst/doc/yandex-direct-get-wordstat-forecast.html | 150 ++++++------ inst/doc/yandex-direct-keyword-bids.Rmd | 4 inst/doc/yandex-direct-keyword-bids.html | 254 +++++++++++----------- man/yadirGetCostData.Rd |only man/yadirGetReport.Rd | 3 vignettes/yandex-direct-auth.Rmd | 94 +++++++- vignettes/yandex-direct-cost-data.Rmd |only vignettes/yandex-direct-get-statistic.Rmd | 2 vignettes/yandex-direct-get-wordstat-forecast.Rmd | 5 vignettes/yandex-direct-keyword-bids.Rmd | 4 34 files changed, 785 insertions(+), 400 deletions(-)
Title: Graphical User Interface (Shiny App) for Package 'brms'
Description: A graphical user interface (GUI) for the
package 'brms' which allows to fit Bayesian regression models using 'Stan'
(<https://mc-stan.org/>) (more specifically, using its R interface, the
package 'rstan'). The GUI is a 'Shiny' (<https://shiny.rstudio.com/>) app,
i.e. it was created using the package 'shiny'.
Author: Frank Weber [aut, cre]
Maintainer: Frank Weber <fweber144@protonmail.com>
Diff between shinybrms versions 1.0.1 dated 2020-03-26 and 1.1.0 dated 2020-06-09
DESCRIPTION | 10 MD5 | 12 NEWS.md | 74 ++ R/launch_shinybrms.R | 60 -- README.md | 132 +++- inst/shinybrms_app/app.R | 1354 ++++++++++++++++++++++++++++++----------------- man/launch_shinybrms.Rd | 99 +-- 7 files changed, 1159 insertions(+), 582 deletions(-)
Title: Multivariate Nonparametric Methods
Description: A collection of multivariate nonparametric methods, selected in part to support an MS level course in nonparametric statistical methods. Methods include adjustments for multiple comparisons, implementation of multivariate Mann-Whitney-Wilcoxon testing, inversion of these tests to produce a confidence region, some permutation tests for linear models, and some algorithms for calculating exact probabilities associated with one- and two- stage testing involving Mann-Whitney-Wilcoxon statistics.
Author: John E. Kolassa [cre],
Stephane Jankowski [aut]
Maintainer: John E. Kolassa <kolassa@stat.rutgers.edu>
Diff between MultNonParam versions 1.3.3 dated 2020-03-09 and 1.3.4 dated 2020-06-09
DESCRIPTION | 8 ++-- MD5 | 22 ++++++----- R/twosamplesurvpvs.R | 40 +++++++++++++-------- R/twosamplesurvtests.R | 3 + inst/Makefile | 6 ++- inst/testinput |only inst/testperm.f90 | 4 +- inst/testtskmsurv.f90 | 87 +++++++++++++++++++++++++++++++++++++--------- inst/tskmsurv.F90 |only man/twosamplesurvtests.Rd | 4 +- src/init.c | 4 +- src/initperm.f90 | 2 + src/tsksurvpv.f90 | 48 ++++++++++++++++--------- 13 files changed, 160 insertions(+), 68 deletions(-)
Title: An Automated Cleaning Tool for Semantic and Linguistic Data
Description: Implements several functions that automates the cleaning and spell-checking of text data. Also converges, finalizes, removes plurals and continuous strings, and puts text data in binary format for semantic network analysis. Uses the 'SemNetDictionaries' package to make the cleaning process more accurate, efficient, and reproducible.
Author: Alexander P. Christensen [aut, cre]
(<https://orcid.org/0000-0002-9798-7037>)
Maintainer: Alexander P. Christensen <alexpaulchristensen@gmail.com>
Diff between SemNetCleaner versions 1.1.5 dated 2020-03-22 and 1.2.0 dated 2020-06-09
SemNetCleaner-1.1.5/SemNetCleaner/R/bad.response.R |only SemNetCleaner-1.1.5/SemNetCleaner/R/combine.responses.R |only SemNetCleaner-1.1.5/SemNetCleaner/R/converge.R |only SemNetCleaner-1.1.5/SemNetCleaner/R/destr.R |only SemNetCleaner-1.1.5/SemNetCleaner/R/dup.match.R |only SemNetCleaner-1.1.5/SemNetCleaner/R/equate.R |only SemNetCleaner-1.1.5/SemNetCleaner/R/finalize.R |only SemNetCleaner-1.1.5/SemNetCleaner/R/full.match.R |only SemNetCleaner-1.1.5/SemNetCleaner/R/is.letter.R |only SemNetCleaner-1.1.5/SemNetCleaner/R/lead.word.R |only SemNetCleaner-1.1.5/SemNetCleaner/R/moniker.R |only SemNetCleaner-1.1.5/SemNetCleaner/R/multi.word.check.R |only SemNetCleaner-1.1.5/SemNetCleaner/R/rm.lead.space.R |only SemNetCleaner-1.1.5/SemNetCleaner/R/spell.check.dictionary.R |only SemNetCleaner-1.1.5/SemNetCleaner/R/splitstr.check.R |only SemNetCleaner-1.1.5/SemNetCleaner/R/starting.letter.R |only SemNetCleaner-1.1.5/SemNetCleaner/R/utils-SemNeTShiny.R |only SemNetCleaner-1.1.5/SemNetCleaner/R/word.check.wrapper.R |only SemNetCleaner-1.1.5/SemNetCleaner/data/lead.word.RData |only SemNetCleaner-1.1.5/SemNetCleaner/man/bad.response.Rd |only SemNetCleaner-1.1.5/SemNetCleaner/man/combine.responses.Rd |only SemNetCleaner-1.1.5/SemNetCleaner/man/converge.Rd |only SemNetCleaner-1.1.5/SemNetCleaner/man/destr.Rd |only SemNetCleaner-1.1.5/SemNetCleaner/man/dup.match.Rd |only SemNetCleaner-1.1.5/SemNetCleaner/man/equate.Rd |only SemNetCleaner-1.1.5/SemNetCleaner/man/finalize.Rd |only SemNetCleaner-1.1.5/SemNetCleaner/man/full.match.Rd |only SemNetCleaner-1.1.5/SemNetCleaner/man/is.letter.Rd |only SemNetCleaner-1.1.5/SemNetCleaner/man/lead.word.Rd |only SemNetCleaner-1.1.5/SemNetCleaner/man/moniker.Rd |only SemNetCleaner-1.1.5/SemNetCleaner/man/multi.word.check.Rd |only SemNetCleaner-1.1.5/SemNetCleaner/man/rm.lead.space.Rd |only SemNetCleaner-1.1.5/SemNetCleaner/man/spell.check.dictionary.Rd |only SemNetCleaner-1.1.5/SemNetCleaner/man/splitstr.check.Rd |only SemNetCleaner-1.1.5/SemNetCleaner/man/starting.letter.Rd |only SemNetCleaner-1.1.5/SemNetCleaner/man/word.check.wrapper.Rd |only SemNetCleaner-1.2.0/SemNetCleaner/DESCRIPTION | 15 SemNetCleaner-1.2.0/SemNetCleaner/MD5 | 84 - SemNetCleaner-1.2.0/SemNetCleaner/NAMESPACE | 23 SemNetCleaner-1.2.0/SemNetCleaner/NEWS | 25 SemNetCleaner-1.2.0/SemNetCleaner/R/best.guess.R | 165 ++- SemNetCleaner-1.2.0/SemNetCleaner/R/bin2resp.R | 12 SemNetCleaner-1.2.0/SemNetCleaner/R/correct.changes.R | 429 ++------ SemNetCleaner-1.2.0/SemNetCleaner/R/letter.freq.R |only SemNetCleaner-1.2.0/SemNetCleaner/R/pluralize.R | 9 SemNetCleaner-1.2.0/SemNetCleaner/R/qwerty.dist.R | 88 - SemNetCleaner-1.2.0/SemNetCleaner/R/read.data.R | 3 SemNetCleaner-1.2.0/SemNetCleaner/R/resp2bin.R |only SemNetCleaner-1.2.0/SemNetCleaner/R/singularize.R | 142 +- SemNetCleaner-1.2.0/SemNetCleaner/R/textcleaner.R | 493 +++------- SemNetCleaner-1.2.0/SemNetCleaner/R/utils-SemNetCleaner.R |only SemNetCleaner-1.2.0/SemNetCleaner/R/zzz.R | 3 SemNetCleaner-1.2.0/SemNetCleaner/build/vignette.rds |binary SemNetCleaner-1.2.0/SemNetCleaner/data/letter.freq.RData |only SemNetCleaner-1.2.0/SemNetCleaner/inst/doc/Preprocessing.Rmd | 2 SemNetCleaner-1.2.0/SemNetCleaner/inst/doc/Preprocessing.html | 2 SemNetCleaner-1.2.0/SemNetCleaner/man/best.guess.Rd | 12 SemNetCleaner-1.2.0/SemNetCleaner/man/bin2resp.Rd | 11 SemNetCleaner-1.2.0/SemNetCleaner/man/correct.changes.Rd | 68 - SemNetCleaner-1.2.0/SemNetCleaner/man/letter.freq.Rd |only SemNetCleaner-1.2.0/SemNetCleaner/man/resp2bin.Rd |only SemNetCleaner-1.2.0/SemNetCleaner/man/singularize.Rd | 27 SemNetCleaner-1.2.0/SemNetCleaner/man/textcleaner.Rd | 62 - SemNetCleaner-1.2.0/SemNetCleaner/vignettes/Preprocessing.Rmd | 2 64 files changed, 682 insertions(+), 995 deletions(-)
Title: Multivariate Normal and t Distributions
Description: Computes multivariate normal and t probabilities, quantiles,
random deviates and densities.
Author: Alan Genz [aut],
Frank Bretz [aut],
Tetsuhisa Miwa [aut],
Xuefei Mi [aut],
Friedrich Leisch [ctb],
Fabian Scheipl [ctb],
Bjoern Bornkamp [ctb] (<https://orcid.org/0000-0002-6294-8185>),
Martin Maechler [ctb],
Torsten Hothorn [aut, cre] (<https://orcid.org/0000-0001-8301-0471>)
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between mvtnorm versions 1.1-0 dated 2020-02-24 and 1.1-1 dated 2020-06-09
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- R/mvnorm.R | 10 +++++----- R/mvt.R | 12 ++++++------ build/vignette.rds |binary inst/NEWS | 7 ++++++- inst/doc/MVT_Rnews.pdf |binary man/Mvnorm.Rd | 8 ++++++-- man/Mvt.Rd | 6 +++++- 9 files changed, 40 insertions(+), 27 deletions(-)
Title: Spatial Data Framework for ggplot2
Description: Spatial data plus the power of the ggplot2 framework means easier mapping when input
data are already in the form of spatial objects.
Author: Dewey Dunnington [aut, cre] (<https://orcid.org/0000-0002-9415-4582>),
Brent Thorne [ctb] (<https://orcid.org/0000-0002-1099-3857>)
Maintainer: Dewey Dunnington <dewey@fishandwhistle.net>
Diff between ggspatial versions 1.1.2 dated 2020-05-26 and 1.1.3 dated 2020-06-09
DESCRIPTION | 10 +++++----- MD5 | 16 ++++++++-------- R/df-spatial-sf.R | 2 +- R/layer-spatial-raster.R | 18 ++++++++++++------ R/layer-spatial.R | 3 +++ man/layer_spatial.Rd | 3 ++- tests/testthat/test-annotation-north-arrow.R | 8 ++++---- tests/testthat/test-df-spatial-sf.R | 2 +- tests/testthat/test-df-spatial.R | 2 +- 9 files changed, 37 insertions(+), 27 deletions(-)
Title: Bayesian Inference of Non-Gaussian State Space Models
Description: Efficient methods for Bayesian inference of state space models
via particle Markov chain Monte Carlo (MCMC) and MCMC based on parallel
importance sampling type weighted estimators
(Vihola, Helske, and Franks, 2020, <arXiv:1609.02541>).
Gaussian, Poisson, binomial, negative binomial, and Gamma
observation densities and basic stochastic volatility models with Gaussian state
dynamics, as well as general non-linear Gaussian models and discretised
diffusion models are supported.
Author: Jouni Helske [aut, cre] (<https://orcid.org/0000-0001-7130-793X>),
Matti Vihola [aut] (<https://orcid.org/0000-0002-8041-7222>)
Maintainer: Jouni Helske <jouni.helske@iki.fi>
Diff between bssm versions 0.1.11 dated 2020-02-26 and 1.0.0 dated 2020-06-09
bssm-0.1.11/bssm/R/as_gssm.R |only bssm-0.1.11/bssm/R/initial_signal.R |only bssm-0.1.11/bssm/R/plot.predict_bssm.R |only bssm-0.1.11/bssm/man/ar1.Rd |only bssm-0.1.11/bssm/man/as_gssm.Rd |only bssm-0.1.11/bssm/man/autoplot.predict_bssm.Rd |only bssm-0.1.11/bssm/man/bsm.Rd |only bssm-0.1.11/bssm/man/gssm.Rd |only bssm-0.1.11/bssm/man/lgg_ssm.Rd |only bssm-0.1.11/bssm/man/mv_gssm.Rd |only bssm-0.1.11/bssm/man/ng_ar1.Rd |only bssm-0.1.11/bssm/man/ng_bsm.Rd |only bssm-0.1.11/bssm/man/ngssm.Rd |only bssm-0.1.11/bssm/man/nlg_ssm.Rd |only bssm-0.1.11/bssm/man/sde_ssm.Rd |only bssm-0.1.11/bssm/src/interval.cpp |only bssm-0.1.11/bssm/src/interval.h |only bssm-0.1.11/bssm/src/lgg_ssm.cpp |only bssm-0.1.11/bssm/src/lgg_ssm.h |only bssm-0.1.11/bssm/src/mgg_ssm.cpp |only bssm-0.1.11/bssm/src/mgg_ssm.h |only bssm-0.1.11/bssm/src/ng_loglik.cpp |only bssm-0.1.11/bssm/src/ng_loglik.h |only bssm-0.1.11/bssm/src/ng_psi_filter.cpp |only bssm-0.1.11/bssm/src/ng_psi_filter.h |only bssm-0.1.11/bssm/src/nlg_amcmc.cpp |only bssm-0.1.11/bssm/src/nlg_amcmc.h |only bssm-0.1.11/bssm/src/nlg_ssm.cpp |only bssm-0.1.11/bssm/src/nlg_ssm.h |only bssm-0.1.11/bssm/src/sde_amcmc.cpp |only bssm-0.1.11/bssm/src/sde_amcmc.h |only bssm-0.1.11/bssm/src/sde_ssm.cpp |only bssm-0.1.11/bssm/src/sde_ssm.h |only bssm-0.1.11/bssm/src/ugg_ar1.cpp |only bssm-0.1.11/bssm/src/ugg_ar1.h |only bssm-0.1.11/bssm/src/ugg_bsm.cpp |only bssm-0.1.11/bssm/src/ugg_bsm.h |only bssm-0.1.11/bssm/src/ugg_ssm.cpp |only bssm-0.1.11/bssm/src/ugg_ssm.h |only bssm-0.1.11/bssm/src/ung_amcmc.cpp |only bssm-0.1.11/bssm/src/ung_amcmc.h |only bssm-0.1.11/bssm/src/ung_ar1.cpp |only bssm-0.1.11/bssm/src/ung_ar1.h |only bssm-0.1.11/bssm/src/ung_bsm.cpp |only bssm-0.1.11/bssm/src/ung_bsm.h |only bssm-0.1.11/bssm/src/ung_ssm.cpp |only bssm-0.1.11/bssm/src/ung_ssm.h |only bssm-0.1.11/bssm/src/ung_svm.cpp |only bssm-0.1.11/bssm/src/ung_svm.h |only bssm-0.1.11/bssm/tests/testthat/test_as_gssm.R |only bssm-0.1.11/bssm/vignettes/lgg_ssm_template.cpp |only bssm-0.1.11/bssm/vignettes/nlg_ssm_template.cpp |only bssm-0.1.11/bssm/vignettes/sde_ssm_template.cpp |only bssm-0.1.11/bssm/vignettes/stan_model.stan |only bssm-1.0.0/bssm/DESCRIPTION | 32 bssm-1.0.0/bssm/MD5 | 287 +- bssm-1.0.0/bssm/NAMESPACE | 146 - bssm-1.0.0/bssm/NEWS | 25 bssm-1.0.0/bssm/R/RcppExports.R | 168 - bssm-1.0.0/bssm/R/approx.R | 128 - bssm-1.0.0/bssm/R/as.data.frame.mcmc_output.R |only bssm-1.0.0/bssm/R/as_bssm.R |only bssm-1.0.0/bssm/R/bootstrap_filter.R | 158 - bssm-1.0.0/bssm/R/bssm-package.R | 13 bssm-1.0.0/bssm/R/check_arguments.R | 50 bssm-1.0.0/bssm/R/ekpf_filter.R | 10 bssm-1.0.0/bssm/R/importance_sample.R | 61 bssm-1.0.0/bssm/R/init_mode.R |only bssm-1.0.0/bssm/R/kfilter.R | 131 - bssm-1.0.0/bssm/R/loglik.R | 186 - bssm-1.0.0/bssm/R/model_type.R |only bssm-1.0.0/bssm/R/models.R | 1435 +++++------ bssm-1.0.0/bssm/R/particle_smoother.R | 214 - bssm-1.0.0/bssm/R/predict.R | 386 --- bssm-1.0.0/bssm/R/print_mcmc.R | 140 - bssm-1.0.0/bssm/R/priors.R | 38 bssm-1.0.0/bssm/R/run_mcmc.R | 1017 +++----- bssm-1.0.0/bssm/R/sim_smoother.R | 106 bssm-1.0.0/bssm/R/smoother.R | 196 - bssm-1.0.0/bssm/build/vignette.rds |binary bssm-1.0.0/bssm/inst/CITATION | 2 bssm-1.0.0/bssm/inst/doc/bssm.R | 140 - bssm-1.0.0/bssm/inst/doc/bssm.Rmd | 267 -- bssm-1.0.0/bssm/inst/doc/bssm.html | 594 ---- bssm-1.0.0/bssm/inst/doc/growth_model.R | 121 bssm-1.0.0/bssm/inst/doc/growth_model.Rmd | 174 - bssm-1.0.0/bssm/inst/doc/growth_model.html | 262 +- bssm-1.0.0/bssm/inst/doc/psi_pf.R |only bssm-1.0.0/bssm/inst/doc/psi_pf.Rmd |only bssm-1.0.0/bssm/inst/doc/psi_pf.html |only bssm-1.0.0/bssm/man/ar1_lg.Rd |only bssm-1.0.0/bssm/man/ar1_ng.Rd |only bssm-1.0.0/bssm/man/as.data.frame.mcmc_output.Rd |only bssm-1.0.0/bssm/man/as_bssm.Rd |only bssm-1.0.0/bssm/man/bootstrap_filter.Rd | 85 bssm-1.0.0/bssm/man/bsm_lg.Rd |only bssm-1.0.0/bssm/man/bsm_ng.Rd |only bssm-1.0.0/bssm/man/bssm.Rd | 9 bssm-1.0.0/bssm/man/drownings.Rd | 4 bssm-1.0.0/bssm/man/ekf.Rd | 6 bssm-1.0.0/bssm/man/ekf_smoother.Rd | 9 bssm-1.0.0/bssm/man/ekpf_filter.Rd | 7 bssm-1.0.0/bssm/man/exchange.Rd | 4 bssm-1.0.0/bssm/man/expand_sample.Rd | 2 bssm-1.0.0/bssm/man/gaussian_approx.Rd | 25 bssm-1.0.0/bssm/man/importance_sample.Rd | 36 bssm-1.0.0/bssm/man/kfilter.Rd | 6 bssm-1.0.0/bssm/man/logLik.Rd | 58 bssm-1.0.0/bssm/man/logLik.ssm_nlg.Rd |only bssm-1.0.0/bssm/man/logLik.ssm_sde.Rd |only bssm-1.0.0/bssm/man/particle_smoother.Rd | 68 bssm-1.0.0/bssm/man/poisson_series.Rd | 4 bssm-1.0.0/bssm/man/predict.Rd | 130 - bssm-1.0.0/bssm/man/print.mcmc_output.Rd | 8 bssm-1.0.0/bssm/man/priors.Rd | 16 bssm-1.0.0/bssm/man/run_mcmc.Rd | 14 bssm-1.0.0/bssm/man/run_mcmc.ssm_nlg.Rd |only bssm-1.0.0/bssm/man/run_mcmc.ssm_sde.Rd |only bssm-1.0.0/bssm/man/run_mcmc_g.Rd | 58 bssm-1.0.0/bssm/man/run_mcmc_ng.Rd | 147 - bssm-1.0.0/bssm/man/sim_smoother.Rd | 63 bssm-1.0.0/bssm/man/smoother.Rd | 6 bssm-1.0.0/bssm/man/ssm_mlg.Rd |only bssm-1.0.0/bssm/man/ssm_mng.Rd |only bssm-1.0.0/bssm/man/ssm_nlg.Rd |only bssm-1.0.0/bssm/man/ssm_sde.Rd |only bssm-1.0.0/bssm/man/ssm_ulg.Rd |only bssm-1.0.0/bssm/man/ssm_ung.Rd |only bssm-1.0.0/bssm/man/summary.mcmc_output.Rd | 16 bssm-1.0.0/bssm/man/svm.Rd | 2 bssm-1.0.0/bssm/man/ukf.Rd | 6 bssm-1.0.0/bssm/src/Makevars | 2 bssm-1.0.0/bssm/src/Makevars.win | 2 bssm-1.0.0/bssm/src/R_approx.cpp | 91 bssm-1.0.0/bssm/src/R_bootstrap_filter.cpp | 383 +-- bssm-1.0.0/bssm/src/R_ekf.cpp | 98 bssm-1.0.0/bssm/src/R_ekpf.cpp | 94 bssm-1.0.0/bssm/src/R_importance_sample.cpp | 80 bssm-1.0.0/bssm/src/R_kfilter.cpp | 78 bssm-1.0.0/bssm/src/R_loglik.cpp | 189 - bssm-1.0.0/bssm/src/R_mcmc.cpp | 692 ++--- bssm-1.0.0/bssm/src/R_milstein.cpp | 26 bssm-1.0.0/bssm/src/R_predict.cpp | 150 - bssm-1.0.0/bssm/src/R_psi.cpp | 161 - bssm-1.0.0/bssm/src/R_sde.cpp | 272 +- bssm-1.0.0/bssm/src/R_sde_state_sampler.cpp | 46 bssm-1.0.0/bssm/src/R_smoother.cpp | 156 - bssm-1.0.0/bssm/src/R_ukf.cpp | 33 bssm-1.0.0/bssm/src/RcppExports.cpp | 738 ++---- bssm-1.0.0/bssm/src/approx_mcmc.cpp |only bssm-1.0.0/bssm/src/approx_mcmc.h |only bssm-1.0.0/bssm/src/distr_consts.cpp | 31 bssm-1.0.0/bssm/src/distr_consts.h | 8 bssm-1.0.0/bssm/src/dmvnorm.cpp | 2 bssm-1.0.0/bssm/src/filter_smoother.cpp | 2 bssm-1.0.0/bssm/src/mcmc.cpp | 2069 ++--------------- bssm-1.0.0/bssm/src/mcmc.h | 68 bssm-1.0.0/bssm/src/milstein.cpp | 8 bssm-1.0.0/bssm/src/milstein_functions.h | 10 bssm-1.0.0/bssm/src/model_ar1_lg.cpp |only bssm-1.0.0/bssm/src/model_ar1_lg.h |only bssm-1.0.0/bssm/src/model_ar1_ng.cpp |only bssm-1.0.0/bssm/src/model_ar1_ng.h |only bssm-1.0.0/bssm/src/model_bsm_lg.cpp |only bssm-1.0.0/bssm/src/model_bsm_lg.h |only bssm-1.0.0/bssm/src/model_bsm_ng.cpp |only bssm-1.0.0/bssm/src/model_bsm_ng.h |only bssm-1.0.0/bssm/src/model_ssm_mlg.cpp |only bssm-1.0.0/bssm/src/model_ssm_mlg.h |only bssm-1.0.0/bssm/src/model_ssm_mng.cpp |only bssm-1.0.0/bssm/src/model_ssm_mng.h |only bssm-1.0.0/bssm/src/model_ssm_nlg.cpp |only bssm-1.0.0/bssm/src/model_ssm_nlg.h |only bssm-1.0.0/bssm/src/model_ssm_sde.cpp |only bssm-1.0.0/bssm/src/model_ssm_sde.h |only bssm-1.0.0/bssm/src/model_ssm_ulg.cpp |only bssm-1.0.0/bssm/src/model_ssm_ulg.h |only bssm-1.0.0/bssm/src/model_ssm_ung.cpp |only bssm-1.0.0/bssm/src/model_ssm_ung.h |only bssm-1.0.0/bssm/src/model_svm.cpp |only bssm-1.0.0/bssm/src/model_svm.h |only bssm-1.0.0/bssm/src/stratified_sample.cpp | 2 bssm-1.0.0/bssm/src/summary.cpp | 26 bssm-1.0.0/bssm/src/summary.h | 36 bssm-1.0.0/bssm/tests/testthat/test_approx.R | 72 bssm-1.0.0/bssm/tests/testthat/test_as_bssm.R |only bssm-1.0.0/bssm/tests/testthat/test_basics.R | 10 bssm-1.0.0/bssm/tests/testthat/test_bootstrap_filter.R | 36 bssm-1.0.0/bssm/tests/testthat/test_is.R | 12 bssm-1.0.0/bssm/tests/testthat/test_mcmc.R | 70 bssm-1.0.0/bssm/tests/testthat/test_models.R | 85 bssm-1.0.0/bssm/vignettes/bssm.Rmd | 267 -- bssm-1.0.0/bssm/vignettes/bssm.bib | 126 - bssm-1.0.0/bssm/vignettes/growth_model.Rmd | 174 - bssm-1.0.0/bssm/vignettes/psi_pf.Rmd |only bssm-1.0.0/bssm/vignettes/ssm_nlg_template.cpp |only bssm-1.0.0/bssm/vignettes/ssm_sde_template.cpp |only 197 files changed, 5197 insertions(+), 8484 deletions(-)
Title: Sample Size and Power for Comparing Inequality Constrained
Hypotheses
Description: A collection of methods to determine the required sample size for
the evaluation of inequality constrained hypotheses by means of a Bayes
factor. Alternatively, for a given sample size, the unconditional error
probabilities or the expected conditional error probabilities can be
determined. Additional material on the methods in this package is
available in Klaassen, F., Hoijtink, H. & Gu, X. (2019)
<doi:10.31219/osf.io/d5kf3>.
Author: Fayette Klaassen
Maintainer: Fayette Klaassen <klaassen.fayette@gmail.com>
Diff between BayesianPower versions 0.1.6 dated 2019-05-31 and 0.2.0 dated 2020-06-09
DESCRIPTION | 8 ++-- MD5 | 26 ++++++------- NEWS.md | 4 ++ R/power_sampsize.R | 83 +++++++++++++++----------------------------- R/utils.R | 20 ++++++---- build/vignette.rds |binary inst/doc/bayesianpower.R | 12 +++--- inst/doc/bayesianpower.Rmd | 21 ++++++----- inst/doc/bayesianpower.html | 33 +++++++++-------- man/bayes_power.Rd | 47 +++++++++++++----------- man/bayes_sampsize.Rd | 48 ++++++++++++++----------- man/calc_bf.Rd | 4 +- man/samp_bf.Rd | 8 ++-- vignettes/bayesianpower.Rmd | 21 ++++++----- 14 files changed, 172 insertions(+), 163 deletions(-)
Title: C++ Header Files for Stan
Description: The C++ header files of the Stan project are provided by this package, but it contains little R code or documentation. The main reference is the vignette. There is a shared object containing part of the 'CVODES' library, but its functionality is not accessible from R. 'StanHeaders' is only useful for developers who want to utilize the 'LinkingTo' directive of their package's DESCRIPTION file to build on the Stan library without incurring unnecessary dependencies. The Stan project develops a probabilistic programming language that implements full or approximate Bayesian statistical inference via Markov Chain Monte Carlo or 'variational' methods and implements (optionally penalized) maximum likelihood estimation via optimization. The Stan library includes an advanced automatic differentiation scheme, 'templated' statistical and linear algebra functions that can handle the automatically 'differentiable' scalar types (and doubles, 'ints', etc.), and a parser for the Stan language. The 'rstan' package provides user-facing R functions to parse, compile, test, estimate, and analyze Stan models.
Author: Ben Goodrich [cre, aut],
Joshua Pritikin [ctb],
Andrew Gelman [aut],
Bob Carpenter [aut],
Matt Hoffman [aut],
Daniel Lee [aut],
Michael Betancourt [aut],
Marcus Brubaker [aut],
Jiqiang Guo [aut],
Peter Li [aut],
Allen Riddell [aut],
Marco Inacio [aut],
Mitzi Morris [aut],
Jeffrey Arnold [aut],
Rob Goedman [aut],
Brian Lau [aut],
Rob Trangucci [aut],
Jonah Gabry [aut],
Alp Kucukelbir [aut],
Robert Grant [aut],
Dustin Tran [aut],
Michael Malecki [aut],
Yuanjun Gao [aut],
Trustees of Columbia University [cph],
Lawrence Livermore National Security [cph] (CVODES),
The Regents of the University of California [cph] (CVODES),
Southern Methodist University [cph] (CVODES)
Maintainer: Ben Goodrich <benjamin.goodrich@columbia.edu>
Diff between StanHeaders versions 2.21.0-3 dated 2020-05-28 and 2.21.0-5 dated 2020-06-09
DESCRIPTION | 13 +++++++------ MD5 | 14 +++++++------- NAMESPACE | 2 +- R/Flags.R | 5 +++-- inst/doc/stanmath.R | 3 +-- inst/doc/stanmath.Rmd | 17 ++++++++--------- inst/doc/stanmath.html | 32 +++++++++++++++----------------- vignettes/stanmath.Rmd | 17 ++++++++--------- 8 files changed, 50 insertions(+), 53 deletions(-)
Title: Methods and Measures for Semantic Network Analysis
Description: Implements several functions for the analysis of semantic networks including different network estimation algorithms, partial node bootstrapping (Kenett, Anaki, & Faust, 2014 <doi:10.3389/fnhum.2014.00407>), random walk simulation (Kenett & Austerweil, 2016 <http://alab.psych.wisc.edu/papers/files/Kenett16CreativityRW.pdf>), and a function to compute global network measures. Significance tests and plotting features are also implemented.
Author: Alexander P. Christensen [aut, cre]
(<https://orcid.org/0000-0002-9798-7037>),
Yoed N. Kenett [aut, ctb] (<https://orcid.org/0000-0003-3872-7689>)
Maintainer: Alexander P. Christensen <alexpaulchristensen@gmail.com>
Diff between SemNeT versions 1.2.0 dated 2020-03-21 and 1.3.0 dated 2020-06-09
SemNeT-1.2.0/SemNeT/R/compare.nets.R |only SemNeT-1.2.0/SemNeT/R/partboot.R |only SemNeT-1.2.0/SemNeT/R/partboot.test.R |only SemNeT-1.2.0/SemNeT/R/plot.partboot.R |only SemNeT-1.2.0/SemNeT/man/compare.nets.Rd |only SemNeT-1.2.0/SemNeT/man/partboot.Rd |only SemNeT-1.2.0/SemNeT/man/partboot.test.Rd |only SemNeT-1.2.0/SemNeT/man/plot.partboot.Rd |only SemNeT-1.3.0/SemNeT/DESCRIPTION | 20 SemNeT-1.3.0/SemNeT/MD5 | 89 +- SemNeT-1.3.0/SemNeT/NAMESPACE | 21 SemNeT-1.3.0/SemNeT/NEWS | 27 SemNeT-1.3.0/SemNeT/R/CN.R |only SemNeT-1.3.0/SemNeT/R/NRW.R |only SemNeT-1.3.0/SemNeT/R/PF.R |only SemNeT-1.3.0/SemNeT/R/SemNeTShiny.R | 55 + SemNeT-1.3.0/SemNeT/R/bootSemNeT.R |only SemNeT-1.3.0/SemNeT/R/compare_nets.R |only SemNeT-1.3.0/SemNeT/R/equate.R |only SemNeT-1.3.0/SemNeT/R/finalize.R |only SemNeT-1.3.0/SemNeT/R/methods.R | 26 SemNeT-1.3.0/SemNeT/R/one.result.R | 2 SemNeT-1.3.0/SemNeT/R/open.binary.R | 4 SemNeT-1.3.0/SemNeT/R/open.clean.R |only SemNeT-1.3.0/SemNeT/R/open.group.R |only SemNeT-1.3.0/SemNeT/R/plot.bootSemNeT.R |only SemNeT-1.3.0/SemNeT/R/randnet.test.R | 66 - SemNeT-1.3.0/SemNeT/R/randwalk.R | 291 ++++---- SemNeT-1.3.0/SemNeT/R/similarity.R | 2 SemNeT-1.3.0/SemNeT/R/test.bootSemNeT.R |only SemNeT-1.3.0/SemNeT/R/two.result.R | 2 SemNeT-1.3.0/SemNeT/R/utils-SemNeT.R | 959 ++++++++++++++++++++++----- SemNeT-1.3.0/SemNeT/R/utils-SemNeTShiny.R | 831 ++++++++++++++++------- SemNeT-1.3.0/SemNeT/build/vignette.rds |binary SemNeT-1.3.0/SemNeT/data/one.result.RData |binary SemNeT-1.3.0/SemNeT/data/open.clean.RData |only SemNeT-1.3.0/SemNeT/data/open.group.RData |only SemNeT-1.3.0/SemNeT/data/two.result.RData |binary SemNeT-1.3.0/SemNeT/inst/Shiny/server.R | 519 +++++++++++--- SemNeT-1.3.0/SemNeT/inst/Shiny/ui.R | 47 - SemNeT-1.3.0/SemNeT/inst/doc/Analyzing.R | 25 SemNeT-1.3.0/SemNeT/inst/doc/Analyzing.Rmd | 33 SemNeT-1.3.0/SemNeT/inst/doc/Analyzing.html | 33 SemNeT-1.3.0/SemNeT/man/CN.Rd |only SemNeT-1.3.0/SemNeT/man/NRW.Rd |only SemNeT-1.3.0/SemNeT/man/PF.Rd |only SemNeT-1.3.0/SemNeT/man/SemNeTShiny.Rd | 47 - SemNeT-1.3.0/SemNeT/man/bootSemNeT.Rd |only SemNeT-1.3.0/SemNeT/man/compare_nets.Rd |only SemNeT-1.3.0/SemNeT/man/equate.Rd |only SemNeT-1.3.0/SemNeT/man/finalize.Rd |only SemNeT-1.3.0/SemNeT/man/one.result.Rd | 2 SemNeT-1.3.0/SemNeT/man/open.binary.Rd | 2 SemNeT-1.3.0/SemNeT/man/open.clean.Rd |only SemNeT-1.3.0/SemNeT/man/open.group.Rd |only SemNeT-1.3.0/SemNeT/man/plot.bootSemNeT.Rd |only SemNeT-1.3.0/SemNeT/man/plot.compareShiny.Rd |only SemNeT-1.3.0/SemNeT/man/randnet.test.Rd | 5 SemNeT-1.3.0/SemNeT/man/randwalk.Rd | 3 SemNeT-1.3.0/SemNeT/man/test.bootSemNeT.Rd |only SemNeT-1.3.0/SemNeT/man/two.result.Rd | 2 SemNeT-1.3.0/SemNeT/vignettes/Analyzing.Rmd | 33 62 files changed, 2342 insertions(+), 804 deletions(-)
Title: 'Rcpp' Integration for the 'Armadillo' Templated Linear Algebra
Library
Description: 'Armadillo' is a templated C++ linear algebra library (by Conrad
Sanderson) that aims towards a good balance between speed and ease of use. Integer,
floating point and complex numbers are supported, as well as a subset of
trigonometric and statistics functions. Various matrix decompositions are
provided through optional integration with LAPACK and ATLAS libraries.
The 'RcppArmadillo' package includes the header files from the templated
'Armadillo' library. Thus users do not need to install 'Armadillo' itself in
order to use 'RcppArmadillo'. From release 7.800.0 on, 'Armadillo' is
licensed under Apache License 2; previous releases were under licensed as
MPL 2.0 from version 3.800.0 onwards and LGPL-3 prior to that;
'RcppArmadillo' (the 'Rcpp' bindings/bridge to Armadillo) is licensed under
the GNU GPL version 2 or later, as is the rest of 'Rcpp'. Note that
Armadillo requires a fairly recent compiler; for the g++ family at least
version 4.6.* is required.
Author: Dirk Eddelbuettel, Romain Francois, Doug Bates and Binxiang Ni
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppArmadillo versions 0.9.880.1.0 dated 2020-05-17 and 0.9.900.1.0 dated 2020-06-09
ChangeLog | 26 DESCRIPTION | 8 MD5 | 44 R/RcppArmadillo.package.skeleton.R | 5 README.md | 21 inst/NEWS.Rd | 19 inst/doc/RcppArmadillo-intro.pdf |binary inst/doc/RcppArmadillo-sparseMatrix.pdf |binary inst/include/armadillo | 2 inst/include/armadillo_bits/MapMat_meat.hpp | 10 inst/include/armadillo_bits/SpMat_bones.hpp | 2 inst/include/armadillo_bits/SpMat_meat.hpp | 6 inst/include/armadillo_bits/arma_config.hpp | 2 inst/include/armadillo_bits/arma_forward.hpp | 6 inst/include/armadillo_bits/arma_version.hpp | 4 inst/include/armadillo_bits/auxlib_bones.hpp | 37 inst/include/armadillo_bits/auxlib_meat.hpp | 1518 +++++++++++++++++++----- inst/include/armadillo_bits/config.hpp | 11 inst/include/armadillo_bits/config.hpp.cmake | 11 inst/include/armadillo_bits/fn_eig_gen.hpp | 39 inst/include/armadillo_bits/fn_eig_pair.hpp | 34 inst/include/armadillo_bits/glue_solve_meat.hpp | 32 inst/include/armadillo_bits/op_cond_meat.hpp | 8 23 files changed, 1477 insertions(+), 368 deletions(-)
Title: Quality Report Generation for MaxQuant and mzTab Results
Description: Generates Proteomics (PTX) quality control (QC) reports for shotgun LC-MS data analyzed with the
MaxQuant software suite (from .txt files) or mzTab files (ideally from OpenMS 'QualityControl' tool).
Reports are customizable (target thresholds, subsetting) and available in HTML or PDF format.
Published in J. Proteome Res., Proteomics Quality Control: Quality Control Software for MaxQuant Results (2015)
<doi:10.1021/acs.jproteome.5b00780>.
Author: Chris Bielow [aut, cre],
Juliane Schmachtenberg [ctb],
Swenja Wagner [ctb],
Patricia Scheil [ctb],
Tom Waschischek [ctb],
Guido Mastrobuoni [dtc, rev]
Maintainer: Chris Bielow <chris.bielow@bsc.fu-berlin.de>
Diff between PTXQC versions 1.0.4 dated 2020-03-28 and 1.0.5 dated 2020-06-09
DESCRIPTION | 10 - MD5 | 68 +++++------ NAMESPACE | 2 NEWS | 4 R/MzTabReader.R | 7 - R/PTXQC.R | 1 R/qcMetric_PAR.R | 25 ++-- README.md | 5 build/vignette.rds |binary inst/doc/PTXQC-Basic_Guide_for_R_users.html | 17 -- inst/doc/PTXQC-CustomizeReport.html | 17 -- inst/doc/PTXQC-DragNDrop.html | 17 -- inst/doc/PTXQC-FAQ.html | 29 ---- inst/doc/PTXQC-Input_And_Output_Data.html | 17 -- inst/doc/PTXQC-ListOfMetrics.html | 169 ++++++++++++---------------- man/CV.Rd | 32 ++--- man/LCS.Rd | 38 +++--- man/PTXQC.Rd | 2 man/RSD.Rd | 32 ++--- man/addGGtitle.Rd | 44 +++---- man/del0.Rd | 32 ++--- man/getMetaData.Rd | 36 ++--- man/getMetricsObjects.Rd | 32 ++--- man/ggText.Rd | 40 +++--- man/grapes-plus-grapes.Rd | 36 ++--- man/lcpCount.Rd | 32 ++--- man/lcsCount.Rd | 32 ++--- man/pasten.Rd | 42 +++--- man/pastet.Rd | 42 +++--- man/print.PTXQC_table.Rd | 30 ++-- man/printWithFooter.Rd | 40 +++--- man/qcMetric_MSMSScans_TopNoverRT-class.Rd | 20 +-- man/repEach.Rd | 46 +++---- man/scale01linear.Rd | 36 ++--- man/theme_blank.Rd | 26 ++-- 35 files changed, 495 insertions(+), 563 deletions(-)
Title: Multiple Precision Arithmetic
Description: Multiple Precision Arithmetic (big integers and rationals,
prime number tests, matrix computation), "arithmetic without limitations"
using the C library GMP (GNU Multiple Precision Arithmetic).
Author: Antoine Lucas, Immanuel Scholz, Rainer Boehme <rb-gmp@reflex-studio.de>,
Sylvain Jasson <Sylvain.Jasson@inrae.fr>,
Martin Maechler <maechler@stat.math.ethz.ch>
Maintainer: Antoine Lucas <antoinelucas@gmail.com>
Diff between gmp versions 0.5-14 dated 2020-05-17 and 0.6-0 dated 2020-06-09
ChangeLog | 15 +++ DESCRIPTION | 10 +- MD5 | 60 +++++++-------- NAMESPACE | 66 ++++++++++------- R/AllClasses-etc.R | 25 ++++++ R/biginteger.R | 117 ++++++++++++++++++++++-------- R/bigq.R | 88 +++++++++++++++++------ src/biginteger.cc | 2 src/biginteger.h | 2 src/bigintegerR.cc | 2 src/bigintegerR.h | 2 src/bigmod.h | 2 src/bigrational.cc | 2 src/bigrational.h | 2 src/bigrationalR.cc | 2 src/bigrationalR.h | 2 src/bigvec.h | 2 src/bigvec_q.h | 2 src/extract_matrix.h | 2 src/factor.cc | 2 src/factor.h | 2 src/matrix.cc | 2 src/matrix.h | 2 src/matrixq.cc | 2 src/matrixq.h | 2 src/solve.cc | 2 src/solve.h | 2 tests/arith-ex.R | 15 +++ tests/basic-ex.R | 12 +++ tests/gmp-test.R | 4 - tests/gmp-test.Rout.save | 179 +++++++++++++++++++++++++---------------------- 31 files changed, 412 insertions(+), 219 deletions(-)
Title: Bindings for the 'Geospatial' Data Abstraction Library
Description: Provides bindings to the 'Geospatial' Data Abstraction Library ('GDAL') (>= 1.11.4) and access to projection/transformation operations from the 'PROJ' library. Use is made of classes defined in the 'sp' package. Raster and vector map data can be imported into R, and raster and vector 'sp' objects exported. The 'GDAL' and 'PROJ' libraries are external to the package, and, when installing the package from source, must be correctly installed first; it is important that 'GDAL' < 3 be matched with 'PROJ' < 6. From 'rgdal' 1.5-8, installed with to 'GDAL' >=3, 'PROJ' >=6 and 'sp' >= 1.4, coordinate reference systems use 'WKT2_2019' strings, not 'PROJ' strings. 'Windows' and 'macOS' binaries (including 'GDAL', 'PROJ' and 'Expat') are provided on 'CRAN'.
Author: Roger Bivand [cre, aut] (<https://orcid.org/0000-0003-2392-6140>),
Tim Keitt [aut],
Barry Rowlingson [aut, ctb],
Edzer Pebesma [ctb],
Michael Sumner [ctb],
Robert Hijmans [ctb],
Even Rouault [cph, ctb],
Frank Warmerdam [cph, ctb],
Jeroen Ooms [ctb],
Colin Rundel [ctb]
Maintainer: Roger Bivand <Roger.Bivand@nhh.no>
Diff between rgdal versions 1.5-8 dated 2020-05-28 and 1.5-10 dated 2020-06-09
ChangeLog | 64 ++ DESCRIPTION | 27 MD5 | 45 - R/AAA.R | 2 R/ogr_sp.R | 9 build/vignette.rds |binary configure | 471 ++++++--------- configure.ac | 273 +++++---- inst/ChangeLog | 64 ++ inst/SVN_VERSION | 2 inst/doc/CRS_projections_transformations.R | 38 - inst/doc/CRS_projections_transformations.Rmd | 69 +- inst/doc/CRS_projections_transformations.html | 36 - inst/doc/OGR_shape_encoding.pdf |binary inst/doc/PROJ6_GDAL3.html | 14 man/CRS-class.Rd | 2 man/make_EPSG.Rd | 2 man/readOGR.Rd | 4 src/OGR_write.cpp | 6 src/inverser.c | 2 src/proj6.cpp |only src/proj_info6.cpp | 776 +------------------------- src/projectit.cpp | 59 - vignettes/CRS_projections_transformations.Rmd | 69 +- 24 files changed, 755 insertions(+), 1279 deletions(-)
Title: Setup and connect to 'OpenTripPlanner'
Description: Setup and connect to 'OpenTripPlanner' (OTP) <http://www.opentripplanner.org/>.
OTP is an open source platform for multi-modal and multi-agency
journey planning written in 'Java'. The package allows you to manage a local version or
connect to remote OTP server.
This package has been peer-reviewed by rOpenSci (v. 0.2.0.0).
Author: Malcolm Morgan [aut, cre] (<https://orcid.org/0000-0002-9488-9183>),
Marcus Young [aut] (<https://orcid.org/0000-0003-4627-1116>),
Robin Lovelace [aut] (<https://orcid.org/0000-0001-5679-6536>),
Layik Hama [ctb] (<https://orcid.org/0000-0003-1912-4890>)
Maintainer: Malcolm Morgan <m.morgan1@leeds.ac.uk>
Diff between opentripplanner versions 0.2.2.0 dated 2020-06-06 and 0.2.3.0 dated 2020-06-09
opentripplanner-0.2.2.0/opentripplanner/R/otp-isochrone.R |only opentripplanner-0.2.2.0/opentripplanner/inst/doc/OTPv2.R |only opentripplanner-0.2.2.0/opentripplanner/inst/doc/OTPv2.Rmd |only opentripplanner-0.2.2.0/opentripplanner/inst/doc/OTPv2.html |only opentripplanner-0.2.2.0/opentripplanner/vignettes/OTPv2.Rmd |only opentripplanner-0.2.3.0/opentripplanner/DESCRIPTION | 10 opentripplanner-0.2.3.0/opentripplanner/MD5 | 35 - opentripplanner-0.2.3.0/opentripplanner/NEWS.md | 6 opentripplanner-0.2.3.0/opentripplanner/R/otp-isochrone-batch.R | 23 opentripplanner-0.2.3.0/opentripplanner/R/otp-plan.R | 267 +++++----- opentripplanner-0.2.3.0/opentripplanner/build/vignette.rds |binary opentripplanner-0.2.3.0/opentripplanner/inst/doc/advanced_features.Rmd | 2 opentripplanner-0.2.3.0/opentripplanner/inst/doc/advanced_features.html | 24 opentripplanner-0.2.3.0/opentripplanner/inst/doc/known_issues.html | 4 opentripplanner-0.2.3.0/opentripplanner/inst/doc/opentripplanner.html | 19 opentripplanner-0.2.3.0/opentripplanner/inst/doc/prerequisites.html | 4 opentripplanner-0.2.3.0/opentripplanner/man/json_example_drive.Rd | 34 - opentripplanner-0.2.3.0/opentripplanner/man/json_example_transit.Rd | 34 - opentripplanner-0.2.3.0/opentripplanner/man/opentripplanner-package.Rd | 80 +- opentripplanner-0.2.3.0/opentripplanner/man/otp_plan.Rd | 127 ++-- opentripplanner-0.2.3.0/opentripplanner/vignettes/advanced_features.Rmd | 2 21 files changed, 364 insertions(+), 307 deletions(-)
More information about opentripplanner at CRAN
Permanent link
Title: 2D and 3D Hive Plots for R
Description: Creates and plots 2D and 3D hive plots. Hive plots are a unique method of displaying networks of many types in which node properties are mapped to axes using meaningful properties rather than being arbitrarily positioned. The hive plot concept was invented by Martin Krzywinski at the Genome Science Center (www.hiveplot.net/). Keywords: networks, food webs, linnet, systems biology, bioinformatics.
Author: Bryan A. Hanson [aut, cre] (<https://orcid.org/0000-0003-3536-8246>),
Vesna Memisevic [ctb],
Jonathan Chung [ctb]
Maintainer: Bryan A. Hanson <hanson@depauw.edu>
Diff between HiveR versions 0.3.56 dated 2020-05-07 and 0.3.63 dated 2020-06-09
DESCRIPTION | 11 ++++++----- MD5 | 12 ++++++------ NEWS.md | 4 ++++ build/vignette.rds |binary inst/doc/HiveR.Rmd | 2 +- inst/doc/HiveR.pdf |binary vignettes/HiveR.Rmd | 2 +- 7 files changed, 18 insertions(+), 13 deletions(-)
Title: Processing various types of data on GEO and TCGA
Description: Gene Expression Omnibus(GEO) and The Cancer Genome Atlas (TCGA)
provide us with a wealth of data, such as RNA-seq, DNA Methylation,
and Copy number variation data. It's easy to download data from TCGA using the
gdc tool, but processing these data into a format suitable for bioinformatics
analysis requires more work. This R package was developed to handle these data.
Author: Erqiang Hu [aut, cre]
Maintainer: Erqiang Hu <13766876214@163.com>
Diff between GeoTcgaData versions 0.2.3 dated 2020-02-22 and 0.2.4 dated 2020-06-09
DESCRIPTION | 8 ++-- MD5 | 32 +++++++++--------- NAMESPACE | 2 - R/fpkm_count_conversion.r | 14 +------ R/id_conversion_all.r | 81 ++++++++++++++++++++++++++++++---------------- inst/doc/GeoTcgaData.html | 6 ++- man/GSE66705_sample2.Rd | 34 ++++++++++--------- man/classify_sample.Rd | 38 ++++++++++----------- man/fpkmToTpm_matrix.Rd | 4 +- man/geneExpress.Rd | 34 ++++++++++--------- man/hgnc.Rd | 28 ++++++++------- man/hgnc_file.Rd | 4 +- man/id_conversion.Rd | 38 ++++++++++----------- man/kegg_liver.Rd | 34 ++++++++++--------- man/module.Rd | 28 ++++++++------- man/profile.Rd | 34 ++++++++++--------- man/ventricle.Rd | 34 ++++++++++--------- 17 files changed, 245 insertions(+), 208 deletions(-)
Title: A Class for Working with Time Series Based on 'data.table' and
'R6' with Largely Optional Reference Semantics
Description: Basic time series functionalities such as listing of missing
values, application of arbitrary aggregation as well as rolling (asymmetric)
window functions and automatic detection of periodicity. As it is mainly
based on 'data.table', it is fast and - in combination with the 'R6'
package - offers reference semantics. In addition to its native R6
interface, it provides an S3 interface inclusive an S3 wrapper method
generator for those who prefer the latter.
Author: Gerold Hepp [aut, cre]
Maintainer: Gerold Hepp <ghepp@iwag.tuwien.ac.at>
Diff between DTSg versions 0.4.1 dated 2020-05-08 and 0.5.0 dated 2020-06-09
DESCRIPTION | 18 MD5 | 57 - NAMESPACE | 2 NEWS.md | 18 R/ClassDTSg.R | 435 ++++++++----- R/Swrappers.R | 106 ++- R/assertives.R | 46 - R/funby.R | 48 - R/funinterpolate.R | 4 R/rollback.R | 1 README.md | 2 build/vignette.rds |binary inst/doc/a_basicUsage.R | 34 - inst/doc/a_basicUsage.Rmd | 23 inst/doc/a_basicUsage.html | 1198 +++++++++++++++++------------------- inst/doc/b_advancedUsage.R | 41 - inst/doc/b_advancedUsage.Rmd | 32 inst/doc/b_advancedUsage.html | 992 +++++++++++++++-------------- inst/tinytest/data.R | 16 inst/tinytest/test_DTSg.R | 187 ++++- inst/tinytest/test_assertives.R | 33 inst/tinytest/test_funinterpolate.R | 2 man/DTSg.Rd | 22 man/aggregate.DTSg.Rd | 27 man/alter.DTSg.Rd | 15 man/colapply.DTSg.Rd | 27 man/getCol.DTSg.Rd |only man/plot.DTSg.Rd | 4 vignettes/a_basicUsage.Rmd | 23 vignettes/b_advancedUsage.Rmd | 32 30 files changed, 1960 insertions(+), 1485 deletions(-)
More information about distributional at CRAN
Permanent link
More information about Distributacalcul at CRAN
Permanent link
Title: Utilities for 'big.matrix' Objects from Package 'bigmemory'
Description: Extend the 'bigmemory' package with various analytics.
Functions 'bigkmeans' and 'binit' may also be used with native R objects.
For 'tapply'-like functions, the bigtabulate package may also be helpful.
For linear algebra support, see 'bigalgebra'. For mutex (locking) support
for advanced shared-memory usage, see 'synchronicity'.
Author: John W. Emerson [cre, aut],
Michael J. Kane [aut],
Saksham Chandra [ctb]
Maintainer: Michael J. Kane <bigmemoryauthors@gmail.com>
Diff between biganalytics versions 1.1.20 dated 2020-06-02 and 1.1.21 dated 2020-06-09
DESCRIPTION | 9 +++++---- MD5 | 10 +++++----- NAMESPACE | 3 +-- R/hello-biganalytics.R | 20 +------------------- R/summary.stat.R | 1 - man/biganalytics-package.Rd | 23 ----------------------- 6 files changed, 12 insertions(+), 54 deletions(-)
Title: Functions and Data for the Book "Applied Hierarchical Modeling
in Ecology" Vols 1 and 2
Description: Provides functions and data sets to accompany the two volume publication "Applied Hierarchical Modeling in Ecology: Analysis of distribution, abundance and species richness in R and BUGS" by Marc Kéry and Andy Royle: volume 1 (2016, ISBN: 978-0-12-801378-6) and volume 2 (2020, ISBN: 978-0-12-809585-0), <https://www.mbr-pwrc.usgs.gov/pubanalysis/keryroylebook>.
Author: Marc Kéry [aut],
Andy Royle [aut],
Mike Meredith [aut, cre],
Urs Breitenmoser [dtc] (EurasianLynx),
Richard Chandler [ctb],
Bob Dorazio [ctb],
Evan Grant [dtc] (duskySalamanders),
Jon-Andren Henden [dtc] (Finnmark),
Roland Kays [dtc] (MesoCarnivores),
David King [dtc] (cswa),
Xavier Lambin [dtc] (waterVoles),
Jeremy Mizel [ctb, dtc] (treeSparrow),
Anja Molinari-Jobin [dtc] (EurasianLynx),
Réne-Jean Monneret [dtc] (FrenchPeregrines),
Arielle Parsons [dtc] (MesoCarnivores),
René Ruffinoni [dtc] (FrenchPeregrines),
Michael Schaub [ctb],
Rahel Solmann [ctb],
Nicolas Strebel [dtc],
Chris Sutherland [ctb, dtc] (waterVoles),
Mathias Tobler [ctb],
Fridolin Zimmermann [dtc] (EurasianLynx),
Aargau Biodiversity Monitoring Program (LANAG) [dtc],
British Ornithological Trust [dtc] (willowWarbler, UKmarbledWhite,
<https://www.bto.org/>),
Butterfly Conservation [dtc, cph] (UKmarbledWhite,
<https://butterfly-conservation.org>),
Centre for Ecology & Hydrology [dtc, cph] (UKmarbledWhite,
<https://www.ceh.ac.uk>),
Dutch Centre for Field Ornithology (Sovon) [dtc] (wagtail,
<https://www.sovon.nl>),
eMammal [dtc] (MesoCarnivores, <https://emammal.si.edu/>),
Groupe Pèlerin Jura [dtc] (FrenchPeregrines),
Hubbard Brook Ecosystem Study [dtc] (HubbardBrook,
<http://data.hubbardbrook.org/data/dataset.php?id=178>),
Joint Nature Conservation Committee (JNCC) [dtc, cph] (UKmarbledWhite,
<https://jncc.gov.uk/>),
North Carolina Museum of Natural Sciences [dtc] (mesoCarnivores),
North Carolina State University [dtc] (mesoCarnivores),
Progetto Lince Italia [dtc] (EurasianLynx,
<https://www.progettolinceitalia.it>),
Swiss Federal Statistical Office [dtc, cph] (BerneseOberland,
<http://www.bfs.admin.ch>),
Swiss Foundation KORA Carnivore Ecology and Wildlife Management (SCALP
project) [dtc] (EurasianLynx, <https://www.kora.ch>),
Swiss Ornithological Institute [dtc] (<https://www.vogelwarte.ch>),
Centre for Ecology & Hydrology [dtc, cph] (UKmarbledWhite,
<https://www.ceh.ac.uk>),
UK Butterfly Monitoring Scheme (UKBMS) [dtc, cph] (UKmarbledWhite,
<https://www.ceh.ac.uk/our-science/projects/uk-butterfly-monitoring-scheme>)
Maintainer: Mike Meredith <mike@mmeredith.net>
Diff between AHMbook versions 0.1.4 dated 2017-05-19 and 0.2.0 dated 2020-06-09
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AHMbook-0.2.0/AHMbook/R/wigglyOcc_AHM1_10-14_Simulate_occupancy_wiggly_covars.R |only AHMbook-0.2.0/AHMbook/R/zinit.R |only AHMbook-0.2.0/AHMbook/data/BerneseOberland.rda |only AHMbook-0.2.0/AHMbook/data/EurasianLynx.rda |only AHMbook-0.2.0/AHMbook/data/FrenchPeregrines.rda |only AHMbook-0.2.0/AHMbook/data/HubbardBrook.rda |only AHMbook-0.2.0/AHMbook/data/MesoCarnivores.rda |only AHMbook-0.2.0/AHMbook/data/SwissAtlasHa.rda |only AHMbook-0.2.0/AHMbook/data/SwissEagleOwls.rda |only AHMbook-0.2.0/AHMbook/data/SwissMarbledWhite.rda |only AHMbook-0.2.0/AHMbook/data/UKmarbledWhite.rda |only AHMbook-0.2.0/AHMbook/data/crestedTit.rda |only AHMbook-0.2.0/AHMbook/data/crossbillAHM.rda |only AHMbook-0.2.0/AHMbook/data/cswa.rda |only AHMbook-0.2.0/AHMbook/data/datalist |only AHMbook-0.2.0/AHMbook/data/duskySalamanders.rda |only AHMbook-0.2.0/AHMbook/data/greenWoodpecker.rda |only AHMbook-0.2.0/AHMbook/data/spottedWoodpecker.rda |only AHMbook-0.2.0/AHMbook/data/treeSparrow.rda |only AHMbook-0.2.0/AHMbook/data/wagtail.rda |only AHMbook-0.2.0/AHMbook/data/waterVoles.rda |only AHMbook-0.2.0/AHMbook/data/wigglyLine.rda |only AHMbook-0.2.0/AHMbook/data/willowWarbler.rda |only AHMbook-0.2.0/AHMbook/inst/COPYRIGHTS |only AHMbook-0.2.0/AHMbook/inst/WORDLIST |only AHMbook-0.2.0/AHMbook/man/AHMbook-package.Rd | 177 ++++-- AHMbook-0.2.0/AHMbook/man/bigCrossCorr.Rd | 2 AHMbook-0.2.0/AHMbook/man/ch2marray.Rd |only AHMbook-0.2.0/AHMbook/man/color_ramps.Rd |only AHMbook-0.2.0/AHMbook/man/data_BerneseOberland.Rd |only AHMbook-0.2.0/AHMbook/man/data_EurasianLynx.Rd |only AHMbook-0.2.0/AHMbook/man/data_Finnmark.Rd |only AHMbook-0.2.0/AHMbook/man/data_FrenchPeregrines.Rd |only AHMbook-0.2.0/AHMbook/man/data_HubbardBrook.Rd |only AHMbook-0.2.0/AHMbook/man/data_MHB2014.Rd |only AHMbook-0.2.0/AHMbook/man/data_MesoCarnivores.Rd |only AHMbook-0.2.0/AHMbook/man/data_SwissAtlasHa.Rd |only AHMbook-0.2.0/AHMbook/man/data_SwissEagleOwls.Rd |only AHMbook-0.2.0/AHMbook/man/data_SwissMarbledWhite.Rd |only AHMbook-0.2.0/AHMbook/man/data_SwissSquirrels.Rd |only AHMbook-0.2.0/AHMbook/man/data_SwissTits.Rd |only AHMbook-0.2.0/AHMbook/man/data_UKmarbledWhite.Rd |only AHMbook-0.2.0/AHMbook/man/data_crestedTit.Rd |only AHMbook-0.2.0/AHMbook/man/data_crossbillAHM.Rd |only AHMbook-0.2.0/AHMbook/man/data_cswa.Rd |only AHMbook-0.2.0/AHMbook/man/data_dragonflies.Rd |only AHMbook-0.2.0/AHMbook/man/data_duskySalamanders.Rd |only AHMbook-0.2.0/AHMbook/man/data_greenWoodpecker.Rd |only AHMbook-0.2.0/AHMbook/man/data_spottedWoodpecker.Rd |only AHMbook-0.2.0/AHMbook/man/data_treeSparrow.Rd |only AHMbook-0.2.0/AHMbook/man/data_ttdPeregrine.Rd |only AHMbook-0.2.0/AHMbook/man/data_wagtail.Rd |only AHMbook-0.2.0/AHMbook/man/data_waterVoles.Rd |only AHMbook-0.2.0/AHMbook/man/data_wigglyLine.Rd |only AHMbook-0.2.0/AHMbook/man/data_willowWarbler.Rd |only AHMbook-0.2.0/AHMbook/man/e2dist.Rd | 16 AHMbook-0.2.0/AHMbook/man/fitstats.Rd | 11 AHMbook-0.2.0/AHMbook/man/getLVcorrMat.Rd |only AHMbook-0.2.0/AHMbook/man/graphSSM.Rd |only AHMbook-0.2.0/AHMbook/man/image_scale.Rd | 20 AHMbook-0.2.0/AHMbook/man/map.Nmix.resi.Rd | 10 AHMbook-0.2.0/AHMbook/man/modSelFP.Rd |only AHMbook-0.2.0/AHMbook/man/piFuns.Rd | 50 + AHMbook-0.2.0/AHMbook/man/playRN.Rd | 26 AHMbook-0.2.0/AHMbook/man/plot_Nmix_resi.Rd | 12 AHMbook-0.2.0/AHMbook/man/ppc.plot.Rd | 9 AHMbook-0.2.0/AHMbook/man/sim3Occ.Rd | 55 + AHMbook-0.2.0/AHMbook/man/simCJS.Rd |only AHMbook-0.2.0/AHMbook/man/simComm.Rd | 43 - AHMbook-0.2.0/AHMbook/man/simDCM.Rd | 197 +++---- AHMbook-0.2.0/AHMbook/man/simDM_simDM0.Rd |only AHMbook-0.2.0/AHMbook/man/simDSM.Rd |only AHMbook-0.2.0/AHMbook/man/simData.fn.Rd |only AHMbook-0.2.0/AHMbook/man/simDataDK.Rd |only AHMbook-0.2.0/AHMbook/man/simDemoDynocc.Rd |only AHMbook-0.2.0/AHMbook/man/simDynocc.Rd | 176 +++--- AHMbook-0.2.0/AHMbook/man/simDynoccSpatial.Rd |only AHMbook-0.2.0/AHMbook/man/simExpCorrRF.Rd |only AHMbook-0.2.0/AHMbook/man/simFn.Rd |only AHMbook-0.2.0/AHMbook/man/simHDS.Rd | 4 AHMbook-0.2.0/AHMbook/man/simHDSg.Rd | 7 AHMbook-0.2.0/AHMbook/man/simHDSopen.Rd | 2 AHMbook-0.2.0/AHMbook/man/simHDStr.Rd | 6 AHMbook-0.2.0/AHMbook/man/simIssj.sim.Rd |only AHMbook-0.2.0/AHMbook/man/simLdata.Rd |only AHMbook-0.2.0/AHMbook/man/simMultMix.Rd |only AHMbook-0.2.0/AHMbook/man/simNmix.Rd | 40 - AHMbook-0.2.0/AHMbook/man/simNmixSpatial.Rd |only AHMbook-0.2.0/AHMbook/man/simNpC.Rd |only AHMbook-0.2.0/AHMbook/man/simOcc.Rd | 18 AHMbook-0.2.0/AHMbook/man/simOccSpatial.Rd |only AHMbook-0.2.0/AHMbook/man/simOccttd.Rd | 17 AHMbook-0.2.0/AHMbook/man/simPH.Rd |only AHMbook-0.2.0/AHMbook/man/simPOP.Rd |only AHMbook-0.2.0/AHMbook/man/simPPe.Rd |only AHMbook-0.2.0/AHMbook/man/simPdata.Rd |only AHMbook-0.2.0/AHMbook/man/simSpatialDS.Rd |only AHMbook-0.2.0/AHMbook/man/simSpatialDSline.Rd |only AHMbook-0.2.0/AHMbook/man/simSpatialDSte.Rd |only AHMbook-0.2.0/AHMbook/man/simSpatialHDS.Rd |only AHMbook-0.2.0/AHMbook/man/simWigglyOcc.Rd |only AHMbook-0.2.0/AHMbook/man/simpleNmix.Rd | 22 AHMbook-0.2.0/AHMbook/man/spline.prep.Rd | 9 AHMbook-0.2.0/AHMbook/man/standardize.Rd |only AHMbook-0.2.0/AHMbook/man/valid_data.Rd |only AHMbook-0.2.0/AHMbook/man/zinit.Rd |only 204 files changed, 1093 insertions(+), 738 deletions(-)
Title: Advanced Data Analysis of Immune Receptor Repertoires
Description: Platform for the advanced analysis of T cell receptor and
Immunoglobulin repertoires data and visualisation of the analysis results.
Publication: Nazarov et al. (2015) <doi:10.1186/s12859-015-0613-1>.
Author: Vadim Nazarov
Maintainer: Vadim Nazarov <vdm.nazarov@gmail.com>
Diff between tcR versions 2.2.4.1 dated 2020-03-22 and 2.3.2 dated 2020-06-09
DESCRIPTION | 14 MD5 | 100 +-- R/io.R | 20 R/kmers.R | 2 R/onload.R | 38 - R/repdiversity.R | 20 R/repoverlap.R | 22 R/segments.R | 36 + R/shared.R | 3 README.md | 23 build/vignette.rds |binary data/beta.prob.rda |binary data/genesegments.rda |binary data/twa.rda |binary data/twb.rda |binary inst/doc/tcrvignette.R | 4 inst/doc/tcrvignette.Rmd | 16 inst/doc/tcrvignette.html | 1058 ++++++++++++++++++++++++++++++++++++---- man/AA_TABLE.Rd | 6 man/beta.prob.Rd | 4 man/bootstrap.tcr.Rd | 15 man/check.distribution.Rd | 10 man/clonal.space.homeostasis.Rd | 9 man/convergence.index.Rd | 8 man/find.clonotypes.Rd | 11 man/geneUsage.Rd | 10 man/generate.tcr.Rd | 8 man/get.kmers.Rd | 12 man/group.clonotypes.Rd | 10 man/mutation.network.Rd | 11 man/ozScore.Rd | 3 man/parse.cloneset.Rd | 21 man/permutDistTest.Rd | 14 man/rarefaction.Rd | 10 man/repDiversity.Rd | 12 man/repOverlap.Rd | 16 man/revcomp.Rd | 4 man/segments.alphabets.Rd | 6 man/segments.list.Rd | 4 man/spectratype.Rd | 12 man/startmitcr.Rd | 10 man/twinsdata.Rd | 4 man/vis.gene.usage.Rd | 12 man/vis.group.boxplot.Rd | 13 man/vis.heatmap.Rd | 17 man/vis.kmer.histogram.Rd | 7 man/vis.logo.Rd | 9 man/vis.number.count.Rd | 8 man/vis.shared.clonotypes.Rd | 16 man/vis.top.proportions.Rd | 7 vignettes/tcrvignette.Rmd | 16 51 files changed, 1391 insertions(+), 300 deletions(-)
Title: A Versatile Cutting Tool
Description: A tool for cutting data into intervals. Allows singleton intervals.
Always includes the whole range of data by default. Flexible labelling.
Convenience functions for cutting by quantiles etc. Handles dates and times.
Author: David Hugh-Jones [aut, cre]
Maintainer: David Hugh-Jones <davidhughjones@gmail.com>
Diff between santoku versions 0.3.0 dated 2020-01-24 and 0.4.0 dated 2020-06-09
DESCRIPTION | 16 - MD5 | 99 +++++--- NAMESPACE | 28 ++ NEWS.md | 63 +++++ R/RcppExports.R | 4 R/breaks-impl.R | 207 ++++++++++++------ R/breaks.R | 336 ++++++++++++++++++++---------- R/categorize.R |only R/chop.R | 167 +++++++++++--- R/knife.R | 12 - R/labels-impl.R |only R/labels.R | 235 ++++++++++++++++---- R/santoku-package.R | 22 - R/utils.R | 21 + README.md | 6 build/santoku.pdf |only build/vignette.rds |binary inst/doc/santoku.R | 41 +-- inst/doc/santoku.Rmd | 73 +++--- inst/doc/santoku.html | 264 ++++++++++++----------- man/brk-left-right.Rd | 21 - man/brk_default.Rd |only man/brk_manual.Rd | 10 man/brk_width-for-datetime.Rd |only man/chop.Rd | 91 ++++++-- man/chop_mean_sd.Rd | 26 +- man/chop_n.Rd | 32 +- man/chop_quantiles.Rd | 40 ++- man/chop_width.Rd | 44 ++- man/figures/lifecycle-archived.svg |only man/figures/lifecycle-defunct.svg |only man/figures/lifecycle-deprecated.svg |only man/figures/lifecycle-experimental.svg |only man/figures/lifecycle-maturing.svg |only man/figures/lifecycle-questioning.svg |only man/figures/lifecycle-soft-deprecated.svg |only man/figures/lifecycle-stable.svg |only man/figures/lifecycle-superseded.svg |only man/fillet.Rd | 21 + man/knife.Rd | 10 man/lbl_dash.Rd | 17 + man/lbl_discrete.Rd |only man/lbl_endpoint.Rd |only man/lbl_format.Rd | 39 ++- man/lbl_intervals.Rd | 20 + man/lbl_manual.Rd | 6 man/lbl_seq.Rd | 3 man/percent.Rd |only man/santoku-package.Rd | 17 - src/RcppExports.cpp | 11 src/categorize.cpp | 3 tests/testthat/setup-functions.R | 10 tests/testthat/test-Date-DateTime.R |only tests/testthat/test-breaks.R | 94 +++----- tests/testthat/test-chop.R | 129 ++--------- tests/testthat/test-knife.R | 6 tests/testthat/test-labels.R | 196 +++++++++++++++-- tests/testthat/test-tab.R | 13 - tests/testthat/test-zzz-systematic.R |only vignettes/santoku.Rmd | 73 +++--- 60 files changed, 1645 insertions(+), 881 deletions(-)
Title: Analysis and Visualisation of Hydrogen/Deuterium Exchange Mass
Spectrometry Data
Description: Functions for processing, analysis and visualization of Hydrogen Deuterium eXchange monitored by
Mass Spectrometry experiments (HDX-MS). 'HaDeX' introduces a new standardized and reproducible workflow
for the analysis of the HDX-MS data, including novel uncertainty intervals. Additionally, it covers
data exploration, quality control and generation of publication-quality figures. All functionalities
are also available in the in-built 'Shiny' app.
Author: Weronika Puchala [cre, aut] (<https://orcid.org/0000-0003-2163-1429>),
Michal Burdukiewicz [aut] (<https://orcid.org/0000-0001-8926-582X>),
Dominik Rafacz [ctb]
Maintainer: Weronika Puchala <puchala.weronika@gmail.com>
Diff between HaDeX versions 1.1 dated 2020-02-06 and 1.2.1 dated 2020-06-09
CHANGELOG | 10 DESCRIPTION | 12 MD5 | 58 R/calculate_kinetics.R | 3 R/quality_control.R | 2 README.md | 2 build/vignette.rds |binary inst/HaDeX/data-work.R | 1 inst/HaDeX/docs/kinetic_plot_chosen_peptides.md | 8 inst/HaDeX/docs/quality_control_plot.md | 4 inst/HaDeX/report_template.Rmd | 88 inst/HaDeX/server.R | 637 ++ inst/HaDeX/ui.R | 89 inst/doc/overview.R | 72 inst/doc/overview.Rmd | 2 inst/doc/overview.html | 3411 +-------------- man/add_stat_dependency.Rd | 8 man/calculate_confidence_limit_values.Rd | 8 man/calculate_kinetics.Rd | 13 man/calculate_state_deuteration.Rd | 11 man/comparison_plot.Rd | 9 man/plot_coverage.Rd | 7 man/plot_position_frequency.Rd | 7 man/prepare_dataset.Rd | 11 man/woods_plot.Rd | 9 tests/figs/comparison-plot-in-test/comparison-plot-1.svg | 798 +-- tests/figs/comparison-plot-in-test/comparison-plot-2.svg | 820 +-- tests/figs/woods-plot-in-test/woods-plot-1.svg | 482 +- tests/figs/woods-plot-in-test/woods-plot-2.svg | 482 +- vignettes/overview.Rmd | 2 30 files changed, 2506 insertions(+), 4560 deletions(-)
Title: Landscape Meteorology Tools
Description: Functions to estimate weather variables at any position of a landscape [De Caceres et al. (2018) <doi:10.1016/j.envsoft.2018.08.003>].
Author: Miquel De Cáceres [aut, cre],
Nicolas Martin [aut],
Víctor Granda [aut],
Antoine Cabon [aut]
Maintainer: Miquel De Cáceres <miquelcaceres@gmail.com>
Diff between meteoland versions 0.9.2 dated 2020-03-31 and 0.9.3 dated 2020-06-09
DESCRIPTION | 8 MD5 | 20 NAMESPACE | 1 NEWS.md | 5 R/NetCDFutils.R |only R/interpolationgrid.R | 2 R/interpolationpixels.R | 2 R/readmeteorologypoints.R | 2 inst/doc/UserGuide.Rmd | 2 inst/doc/UserGuide.html | 1314 ++++++++++++++++++++++++++-------------------- man/NetCDFutils.Rd |only vignettes/UserGuide.Rmd | 2 12 files changed, 785 insertions(+), 573 deletions(-)
More information about ChangePointTaylor at CRAN
Permanent link
Title: Phylogenetic Tree Search Using Custom Optimality Criteria
Description: Searches for phylogenetic trees that are optimal using a
user-defined criterion.
Handles inapplicable data using the algorithm of
Brazeau, Guillerme and Smith (2019) <doi:10.1093/sysbio/syy083>.
Implements Profile Parsimony (Faith and Trueman, 2001)
<doi:10.1080/10635150118627>, and Successive Approximations (Farris, 1969)
<doi:10.2307/2412182>.
Author: Martin R. Smith [aut, cre, cph]
(<https://orcid.org/0000-0001-5660-1727>),
Martin Brazeau [cph] (<https://orcid.org/0000-0002-0650-1282>)
Maintainer: Martin R. Smith <martin.smith@durham.ac.uk>
Diff between TreeSearch versions 0.4.0 dated 2020-02-06 and 0.4.1 dated 2020-06-09
DESCRIPTION | 12 +- MD5 | 162 +++++++++++++-------------- NAMESPACE | 3 NEWS.md | 16 +- R/Fitch.R | 21 +-- R/NNI.R | 12 +- R/RandomTreeScore.R | 4 R/SPR.R | 4 R/TBR.R | 4 R/pp_info_extra_step.r | 23 +-- R/tree_rearrangement.R | 21 +-- R/zzz.R | 35 ++++- build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 76 ++++++------ inst/WORDLIST | 3 inst/doc/getting-started.Rmd | 8 - inst/doc/getting-started.html | 73 +++++++----- inst/doc/inapplicable.R | 32 ++--- inst/doc/inapplicable.Rmd | 6 - inst/doc/inapplicable.html | 159 ++++++++++++++------------ inst/doc/profile-scores.R | 6 - inst/doc/profile-scores.html | 28 +++- inst/doc/profile.R | 34 ++--- inst/doc/profile.Rmd | 12 +- inst/doc/profile.html | 143 +++++++++++++----------- man/CharacterLength.Rd | 6 - man/Fitch.Rd | 15 +- man/ICPerStep.Rd | 3 man/ICSteps.Rd | 22 ++- man/IWScore.Rd | 6 - man/JackLabels.Rd | 12 +- man/MorphyBootstrap.Rd | 37 +++++- man/MorphyErrorCheck.Rd | 57 ++++----- man/MorphyTreeLength.Rd | 34 ++--- man/MorphyWeights.Rd | 57 ++++----- man/NNI.Rd | 16 +- man/PhyDat2Morphy.Rd | 57 ++++----- man/ProfileScore.Rd | 10 + man/Ratchet.Rd | 189 +++++++++++++++++++++++--------- man/RearrangeEdges.Rd | 31 +++-- man/SPR.Rd | 25 +++- man/SetMorphyWeights.Rd | 56 ++++----- man/SingleCharMorphy.Rd | 56 ++++----- man/SuccessiveApproximations.Rd | 17 ++ man/TBR.Rd | 37 ++++-- man/TreeSearch.Rd | 78 +++++++++---- man/UnloadMorphy.Rd | 56 ++++----- man/congreveLamsdellMatrices.Rd | 6 - man/inapplicable.citations.Rd | 4 man/inapplicable.datasets.Rd | 4 man/inapplicable.phyData.Rd | 4 man/mpl_apply_tipdata.Rd | 56 ++++----- man/mpl_attach_rawdata.Rd | 56 ++++----- man/mpl_attach_symbols.Rd | 56 ++++----- man/mpl_delete_Morphy.Rd | 56 ++++----- man/mpl_delete_rawdata.Rd | 56 ++++----- man/mpl_first_down_recon.Rd | 56 ++++----- man/mpl_first_up_recon.Rd | 56 ++++----- man/mpl_get_charac_weight.Rd | 56 ++++----- man/mpl_get_num_charac.Rd | 56 ++++----- man/mpl_get_num_internal_nodes.Rd | 56 ++++----- man/mpl_get_numtaxa.Rd | 56 ++++----- man/mpl_get_symbols.Rd | 56 ++++----- man/mpl_init_Morphy.Rd | 56 ++++----- man/mpl_new_Morphy.Rd | 56 ++++----- man/mpl_second_down_recon.Rd | 56 ++++----- man/mpl_second_up_recon.Rd | 56 ++++----- man/mpl_set_charac_weight.Rd | 56 ++++----- man/mpl_set_num_internal_nodes.Rd | 56 ++++----- man/mpl_set_parsim_t.Rd | 56 ++++----- man/mpl_translate_error.Rd | 56 ++++----- man/mpl_update_lower_root.Rd | 56 ++++----- man/mpl_update_tip.Rd | 56 ++++----- man/referenceTree.Rd | 4 man/summary.morphyPtr.Rd | 56 ++++----- tests/testthat/test-Fitch.R | 7 + tests/testthat/test-TreeSearch.R | 2 tests/testthat/test-data-manipulation.R | 2 vignettes/getting-started.Rmd | 8 - vignettes/inapplicable.Rmd | 6 - vignettes/profile.Rmd | 12 +- 82 files changed, 1741 insertions(+), 1380 deletions(-)
Title: System Native Font Finding
Description: Provides system native access to the font catalogue. As font
handling varies between systems it is difficult to correctly locate
installed fonts across different operating systems. The 'systemfonts'
package provides bindings to the native libraries on Windows, macOS and
Linux for finding font files that can then be used further by e.g. graphic
devices. The main use is intended to be from compiled code but 'systemfonts'
also provides access from R.
Author: Thomas Lin Pedersen [aut, cre]
(<https://orcid.org/0000-0002-5147-4711>),
Jeroen Ooms [aut] (<https://orcid.org/0000-0002-4035-0289>),
Devon Govett [aut] (Author of font-manager),
RStudio [cph]
Maintainer: Thomas Lin Pedersen <thomas.pedersen@rstudio.com>
Diff between systemfonts versions 0.2.2 dated 2020-05-14 and 0.2.3 dated 2020-06-09
DESCRIPTION | 6 - MD5 | 17 +-- NEWS.md | 5 build/vignette.rds |binary inst/doc/c_interface.html | 26 +++- src/cache_lru.h |only src/font_metrics.cpp | 4 src/ft_cache.cpp | 258 ++++++++++++++++++---------------------------- src/ft_cache.h | 123 ++++++++++++++++++--- src/string_shape.cpp | 4 10 files changed, 248 insertions(+), 195 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-07-18 3.6
2019-03-14 3.5
2017-04-28 3.4
2016-05-14 3.3
2016-02-12 3.2
2015-07-14 3.1
2015-04-14 2.2
2015-03-31 2.1
2014-07-15 1.2
2014-05-28 1.1
2014-05-13 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-10-16 1.2.4
2014-11-18 1.2.3
2014-10-28 1.2.2
2014-04-30 1.2.1
2014-02-05 1.2
2013-07-16 1.1
2013-05-28 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-05-28 1.0.2
2018-11-09 1.0.1-2
2017-09-19 1.0.1
2017-07-29 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-10-23 0.1.2
2017-05-11 0.1.1
2016-12-12 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-02-21 2.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-05-15 0.0.2
2020-02-02 0.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-06-30 1.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-03-09 0.1-6
2015-09-15 0.1-5
2015-04-06 0.1-4
2015-03-09 0.1-3
2015-02-06 0.1-2
2014-12-05 0.1-1
2014-08-15 0.1-0
Title: Valence Aware Dictionary and sEntiment Reasoner (VADER)
Description: A lexicon and rule-based sentiment analysis tool that is specifically
attuned to sentiments expressed in social media, and works well on texts from other
domains. Hutto & Gilbert (2014) <https://www.aaai.org/ocs/index.php/ICWSM/ICWSM14/paper/view/8109/8122>.
Author: Katherine Roehrick [aut, cre]
Maintainer: Katherine Roehrick <kr.gitcode@gmail.com>
Diff between vader versions 0.1.0 dated 2020-05-11 and 0.1.1 dated 2020-06-09
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS.md | 3 +++ R/vader_sentiment_word.R | 41 ++++++++++++++++++++++------------------- 4 files changed, 31 insertions(+), 25 deletions(-)
Title: Taxonomic Information from Around the Web
Description: Interacts with a suite of web 'APIs' for taxonomic tasks,
such as getting database specific taxonomic identifiers, verifying
species names, getting taxonomic hierarchies, fetching downstream and
upstream taxonomic names, getting taxonomic synonyms, converting
scientific to common names and vice versa, and more.
Author: Scott Chamberlain [aut, cre] (<https://orcid.org/0000-0003-1444-9135>),
Eduard Szoecs [aut],
Zachary Foster [aut],
Zebulun Arendsee [aut],
Carl Boettiger [ctb],
Karthik Ram [ctb],
Ignasi Bartomeus [ctb],
John Baumgartner [ctb],
James O'Donnell [ctb],
Jari Oksanen [ctb],
Bastian Greshake Tzovaras [ctb],
Philippe Marchand [ctb],
Vinh Tran [ctb],
Maëlle Salmon [ctb],
Gaopeng Li [ctb],
Matthias Grenié [ctb],
rOpenSci [fnd] (https://ropensci.org/)
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between taxize versions 0.9.96 dated 2020-05-19 and 0.9.97 dated 2020-06-09
DESCRIPTION | 8 MD5 | 300 +- NAMESPACE | 1 NEWS.md | 18 R/apg_lookup.R | 60 R/bold_search.R | 34 R/children.R | 67 R/classification.R | 62 R/comm2sci.R | 52 R/downstream.R | 59 R/eol_search.R | 16 R/gbif_downstream.R | 32 R/get_boldid.R | 69 R/get_eolid.R | 64 R/get_gbifid.R | 74 R/get_ids.R | 71 R/get_iucn.R | 43 R/get_natservid.R | 55 R/get_nbnid.R | 65 R/get_pow.R | 55 R/get_tolid.R | 58 R/get_tpsid.R | 60 R/get_tsn.R | 57 R/get_uid.R | 85 R/get_wiki.R | 51 R/get_wormsid.R | 54 R/gni_search.R | 49 R/gnr_resolve.R | 41 R/id2name.R | 49 R/iplant_resolve.R | 13 R/itis_downstream.R | 31 R/iucn_getname.R | 2 R/lowest_common.R | 52 R/names_list.r | 18 R/nbn_search.R | 16 R/pow_search.R | 22 R/resolve.R | 29 R/sci2comm.R | 23 R/synonyms.R | 33 R/tax_name.R | 27 R/tax_rank.R | 61 R/taxize-package.R | 41 R/taxize-params.R |only R/tnrs.R | 33 R/tp_search.R | 57 R/upstream.R | 26 R/zzz.R | 22 README.md | 23 build/vignette.rds |binary data/apg_families.RData |binary data/apg_orders.RData |binary data/rank_ref.RData |binary inst/doc/case_study.Rmd | 2 inst/doc/case_study.html | 4 inst/doc/infotable.html | 4 inst/doc/name_cleaning.Rmd | 48 inst/doc/name_cleaning.html | 50 inst/doc/taxize.Rmd | 55 inst/doc/taxize.html | 77 inst/ignore/apg_script.R |only inst/ignore/rank_ref_script.R | 40 man/apg_families.Rd | 21 man/apg_lookup.Rd | 26 man/apg_orders.Rd | 19 man/bold_search.Rd | 25 man/children.Rd | 18 man/classification.Rd | 9 man/comm2sci.Rd | 38 man/downstream.Rd | 26 man/eol_search.Rd | 13 man/gbif_downstream.Rd | 25 man/get_boldid.Rd | 24 man/get_eolid.Rd | 15 man/get_gbifid.Rd | 29 man/get_ids.Rd | 38 man/get_iucn.Rd | 13 man/get_natservid.Rd | 10 man/get_nbnid.Rd | 24 man/get_pow.Rd | 16 man/get_tolid.Rd | 14 man/get_tpsid.Rd | 15 man/get_tsn.Rd | 12 man/get_uid.Rd | 35 man/get_wiki.Rd | 16 man/get_wormsid.Rd | 12 man/gni_search.Rd | 47 man/gnr_resolve.Rd | 23 man/id2name.Rd | 20 man/iplant_resolve.Rd | 8 man/itis_downstream.Rd | 24 man/lowest_common.Rd | 22 man/names_list.Rd | 12 man/nbn_search.Rd | 13 man/pow_search.Rd | 16 man/resolve.Rd | 20 man/sci2comm.Rd | 16 man/synonyms.Rd | 8 man/tax_name.Rd | 30 man/tax_rank.Rd | 10 man/taxize-params.Rd |only man/tnrs.Rd | 19 man/tp_search.Rd | 38 man/upstream.Rd | 12 tests/fixtures/classification_fetches_merged_taxon.yml |only tests/fixtures/classification_rows_param.yml | 45 tests/fixtures/classification_variety_of_names.yml |only tests/fixtures/comm2sci.yml |only tests/fixtures/eol_dataobjects.yml | 287 -- tests/fixtures/eol_pages.yml | 492 ---- tests/fixtures/eol_pages2.yml | 186 - tests/fixtures/get_eolid.yml | 1229 ++-------- tests/fixtures/trpicos_ping.yml | 24 tests/fixtures/worms_downstream_previously_unaccounted_for_ranks.yml |only tests/testthat/Rplots.pdf |binary tests/testthat/test-bold_search.R | 10 tests/testthat/test-children.R | 2 tests/testthat/test-classification-pow.R | 2 tests/testthat/test-classification.R | 26 tests/testthat/test-comm2sci.R | 30 tests/testthat/test-dataset_rank_ref.R |only tests/testthat/test-eol_dataobjects.R | 2 tests/testthat/test-eol_pages.R | 4 tests/testthat/test-eol_ping.R | 1 tests/testthat/test-eol_search.R | 2 tests/testthat/test-gbif_downstream.R | 6 tests/testthat/test-get_boldid.R | 6 tests/testthat/test-get_eolid.R | 10 tests/testthat/test-get_gbifid.R | 8 tests/testthat/test-get_ids.R | 7 tests/testthat/test-get_natservid.R | 2 tests/testthat/test-get_pow.R | 2 tests/testthat/test-get_tolid.R | 2 tests/testthat/test-get_tpsid.R | 8 tests/testthat/test-get_tsn.R | 6 tests/testthat/test-get_uid.R | 26 tests/testthat/test-get_wormsid.R | 2 tests/testthat/test-gni_search.R | 2 tests/testthat/test-gnr_resolve.R | 10 tests/testthat/test-id2name.R | 2 tests/testthat/test-itis_downstream.R | 2 tests/testthat/test-iucn_getname.R | 2 tests/testthat/test-ping.R | 1 tests/testthat/test-pow_search.R | 6 tests/testthat/test-progressor.R | 4 tests/testthat/test-sci2comm.R | 6 tests/testthat/test-tax_name.R | 12 tests/testthat/test-tax_rank.R | 2 tests/testthat/test-tnrs.R | 2 tests/testthat/test-tp_search.R | 4 tests/testthat/test-worms_downstream.R | 16 vignettes/case_study.Rmd | 2 vignettes/name_cleaning.Rmd | 48 vignettes/name_cleaning.Rmd.og | 14 vignettes/taxize.Rmd | 55 vignettes/taxize.Rmd.og | 10 155 files changed, 2558 insertions(+), 3418 deletions(-)
Title: Sparse Identification of Nonlinear Dynamics
Description: This implements the Brunton et al (2016; PNAS <doi:10.1073/pnas.1517384113>) sparse
identification algorithm for finding ordinary differential equations for a measured
system from raw data (SINDy). The package includes a set of additional tools for
working with raw data, with an emphasis on cognitive science applications (Dale
and Bhat, in press <doi:10.1016/j.cogsys.2018.06.020>).
Author: Rick Dale and Harish S. Bhat
Maintainer: Rick Dale <racdale@gmail.com>
Diff between sindyr versions 0.2.2 dated 2019-08-07 and 0.2.3 dated 2020-06-09
DESCRIPTION | 13 +++++++------ MD5 | 10 +++++----- NAMESPACE | 4 +++- R/sindy.R | 20 ++++++++++++-------- R/windowed_sindy.R | 5 ++++- man/sindyr-package.Rd | 4 ++-- 6 files changed, 33 insertions(+), 23 deletions(-)
Title: Simple Visualisation with 'ggplot2' and 'leaflet' Wrappers
Description: Provides 'ggplot2' and 'leaflet' wrapper functions designed to simplify the creation of high quality graph and map visualisations. These functions only require inputs of data, variables and titles to provide beautiful interactive or image visualisations. However they allow for more flexibility if required. The intent is that high quality well-designed graphs and maps can be made more consistently with less effort, code and expertise than would otherwise be required.
Author: David Hodge [aut, cre] (<https://orcid.org/0000-0002-3868-7501>),
Statistics New Zealand [cph]
Maintainer: David Hodge <davidhodge931@gmail.com>
Diff between simplevis versions 1.1.4 dated 2020-06-02 and 1.2.0 dated 2020-06-09
DESCRIPTION | 12 - MD5 | 38 ++--- NEWS.md | 6 R/ggplot_hbar_fun.R | 8 - R/ggplot_line_fun.R | 8 - R/ggplot_scatter_fun.R | 8 - R/ggplot_sf_fun.R | 226 +++++++++++------------------- R/ggplot_stars_fun.R | 313 +++++++++++++----------------------------- R/ggplot_vbar_fun.R | 112 +++++++++------ inst/doc/simplevis.R | 3 inst/doc/simplevis.Rmd | 6 inst/doc/simplevis.html | 11 - man/ggplot_stars_col.Rd | 2 man/ggplot_stars_col_facet.Rd | 2 man/ggplot_stars_facet.Rd | 2 man/ggplot_vbar.Rd | 2 man/ggplot_vbar_col.Rd | 2 man/ggplot_vbar_col_facet.Rd | 2 man/ggplot_vbar_facet.Rd | 2 vignettes/simplevis.Rmd | 6 20 files changed, 326 insertions(+), 445 deletions(-)
Title: Utilities for Nonlinear Regression and Repeated Measurements
Models
Description: A toolkit of functions for nonlinear regression and repeated
measurements not to be used by itself but called by other Lindsey packages such
as 'gnlm', 'stable', 'growth', 'repeated', and 'event'
(available at <http://www.commanster.eu/rcode.html>).
Author: Bruce Swihart [cre, aut],
Jim Lindsey [aut] (Jim created this package, Bruce is maintaining the
CRAN version)
Maintainer: Bruce Swihart <bruce.swihart@gmail.com>
Diff between rmutil versions 1.1.4 dated 2020-04-25 and 1.1.5 dated 2020-06-09
DESCRIPTION | 6 +- MD5 | 8 +-- NEWS.md | 9 +++ R/int.r | 4 - man/BetaBinom.Rd | 129 ++++++++++++++++++++++++++++++++++--------------------- 5 files changed, 99 insertions(+), 57 deletions(-)
Title: Estimation, Simulation and Visualization of Hierarchical
Archimedean Copulae (HAC)
Description: Package provides the estimation of the structure and the parameters, sampling methods and structural plots of Hierarchical Archimedean Copulae (HAC).
Author: Ostap Okhrin <ostap.okhrin@tu-dresden.de> and Alexander Ristig <alexander.ristig@univie.ac.at>
Maintainer: Alexander Ristig <alexander.ristig@univie.ac.at>
Diff between HAC versions 1.0-6 dated 2019-12-15 and 1.0-7 dated 2020-06-09
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NAMESPACE | 7 ++----- build/vignette.rds |binary inst/ChangeLog | 4 ++++ inst/doc/HAC.pdf |binary 6 files changed, 15 insertions(+), 14 deletions(-)
Title: Subdistribution Analysis of Competing Risks
Description: Estimation, testing and regression modeling of
subdistribution functions in competing risks, as described in Gray
(1988), A class of K-sample tests for comparing the cumulative
incidence of a competing risk, Ann. Stat. 16:1141-1154
<DOI:10.1214/aos/1176350951>, and Fine JP and
Gray RJ (1999), A proportional hazards model for the subdistribution
of a competing risk, JASA, 94:496-509, <DOI:10.1080/01621459.1999.10474144>.
Author: Bob Gray <gray@jimmy.harvard.edu>
Maintainer: Bob Gray <gray@jimmy.harvard.edu>
Diff between cmprsk versions 2.2-9 dated 2019-10-09 and 2.2-10 dated 2020-06-09
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- R/cmprsk.R | 9 ++++++--- 3 files changed, 12 insertions(+), 9 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-05-26 2.0-5.1
2019-03-04 2.0-5
2016-05-20 2.0-4
2014-08-28 2.0-1
2013-12-30 2.0-0
2012-12-23 1.1-3
2011-12-13 1.1-2
2011-10-17 1.1-1
2010-04-19 1.0-7
2008-05-02 1.0-6
2008-03-06 1.0-5
2007-11-27 1.0-3
2007-10-10 1.0-2
2007-09-23 1.0-1
2007-09-06 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-12-06 2.0-3
2016-06-13 2.0-2
2016-05-20 2.0-1
2013-12-30 2.0-0
2011-10-17 1.1-1
2010-04-19 1.0-5
2008-02-20 1.0-4
2007-11-27 1.0-3
2007-10-11 1.0-2
2007-09-23 1.0-1
2007-09-06 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-12-21 2.0-4
2016-05-20 2.0-1
2014-01-03 2.0-0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-05-11 0.2.6
2016-03-30 0.2.4
2015-04-29 0.2.2
2015-02-20 0.2.0
2014-03-02 0.1
2012-12-12 0.0.9
2012-12-11 0.0.8.1
2012-05-21 0.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-05-20 2.0-2
2015-02-15 2.0-1
2013-12-30 2.0-0
2011-10-17 1.1-0
2010-04-19 1.0-3
2007-11-27 1.0-2
2007-10-10 1.0-1
2007-09-06 1.0
Title: Speed Up Exploratory Data Analysis (EDA) with the Correlation
Funnel
Description: Speeds up exploratory data analysis (EDA)
by providing a succinct workflow and interactive visualization tools for understanding
which features have relationships to target (response). Uses binary correlation analysis
to determine relationship. Default correlation method is the Pearson method.
Lian Duan, W Nick Street, Yanchi Liu, Songhua Xu, and Brook Wu (2014) <doi:10.1145/2637484>.
Author: Matt Dancho [aut, cre]
Maintainer: Matt Dancho <mdancho@business-science.io>
Diff between correlationfunnel versions 0.1.0 dated 2019-08-06 and 0.2.0 dated 2020-06-09
DESCRIPTION | 14 MD5 | 40 - NEWS.md | 6 R/binarize.R | 15 R/correlate.R | 6 README.md | 19 build/vignette.rds |binary inst/doc/introducing_correlation_funnel.R | 14 inst/doc/introducing_correlation_funnel.Rmd | 4 inst/doc/introducing_correlation_funnel.html | 277 ++++++----- inst/doc/key_considerations.R | 52 +- inst/doc/key_considerations.Rmd | 2 inst/doc/key_considerations.html | 629 +++++++++++++-------------- man/binarize.Rd | 17 man/customer_churn_tbl.Rd | 8 man/figures/README-unnamed-chunk-5-1.png |binary man/figures/README-unnamed-chunk-6-1.png |binary man/marketing_campaign_tbl.Rd | 23 man/plot_correlation_funnel.Rd | 8 vignettes/introducing_correlation_funnel.Rmd | 4 vignettes/key_considerations.Rmd | 2 21 files changed, 617 insertions(+), 523 deletions(-)
More information about correlationfunnel at CRAN
Permanent link