Title: 'WebSocket' Client Library
Description: Provides a 'WebSocket' client interface for R.
'WebSocket' is a protocol for low-overhead real-time communication:
<https://en.wikipedia.org/wiki/WebSocket>.
Author: Winston Chang [aut, cre],
Joe Cheng [aut],
Alan Dipert [aut],
Barbara Borges [aut],
RStudio [cph],
Peter Thorson [ctb, cph] (WebSocket++ library),
René Nyffenegger [ctb, cph] (Base 64 library),
Micael Hildenborg [ctb, cph] (SHA1 library),
Aladdin Enterprises [cph] (MD5 library),
Bjoern Hoehrmann [ctb, cph] (UTF8 Validation library)
Maintainer: Winston Chang <winston@rstudio.com>
Diff between websocket versions 1.1.0 dated 2019-08-08 and 1.2.0 dated 2020-06-10
DESCRIPTION | 30 - MD5 | 48 +-- NAMESPACE | 1 NEWS.md | 13 R/RcppExports.R | 52 +-- R/websocket.R | 17 - README.md | 6 configure | 15 inst/doc/overview.R | 18 - inst/doc/overview.Rmd | 26 + inst/doc/overview.html | 558 +++++++++++++++-------------------- man/WebSocket.Rd | 6 src/Makevars.in | 7 src/Makevars.win | 8 src/RcppExports.cpp | 118 ++----- src/client.hpp | 15 src/debug.cpp |only src/debug.h |only src/lib/update.sh | 6 src/lib/websocketpp/logger/basic.hpp | 6 src/websocket.cpp | 336 ++++----------------- src/websocket_connection.cpp |only src/websocket_connection.h |only src/websocket_defs.h |only src/websocket_task.cpp |only src/websocket_task.h |only src/wrapped_print.h |only tests/testthat/test-client.R | 242 ++++++++++++--- vignettes/overview.Rmd | 26 + 29 files changed, 753 insertions(+), 801 deletions(-)
Title: Inventory Analytics and Cost Calculations
Description: Facilitate inventory analysis calculations such as stock levels and re-order points,pricing and promotions calculations.
the package includes revenue management techniques such as Multi-product optimization,logit model optimization.
the package includes calculations of inventory metrics, stock-out calculations and ABC analysis calculations.
The functions are referenced from :
1-Harris, Ford W. (1913). "How many parts to make at once". Factory, The Magazine of Management. <isbn10: 135–136, 152>.
2- Nahmias, S. Production and Operations Analysis. McGraw-Hill International Edition. <isbn: 0-07- 2231265-3. Chapter 4>.
3-Silver, E.A., Pyke, D.F., Peterson, R. Inventory Management and Production Planning and Scheduling. <isbn: 978-0471119470>.
4-Ballou, R.H. Business Logistics Management. <isbn: 978-0130661845>. Chapter 9.
5-MIT Micromasters Program.
6- Columbia University course for supply and demand analysis.
8- Price Elasticity of Demand MATH 104,Mark Mac Lean (with assistance from Patrick Chan) 2011W
For further details or correspondence :<www.linkedin.com/in/haythamomar>, <www.rescaleanalytics.com>.
Author: Haytham Omar [aut, cre]
Maintainer: Haytham Omar <haytham@rescaleanalytics.com>
Diff between inventorize versions 1.0.2 dated 2019-05-19 and 1.0.3 dated 2020-06-10
DESCRIPTION | 20 ++++++++------ MD5 | 42 +++++++++++++++++-------------- NAMESPACE | 5 +++ R/Multi_Competing_optimization.R |only R/inventorize.R | 6 ++-- R/linear_elasticity.R |only R/single_product_optimization..R |only man/CSOE.Rd | 12 +++++++- man/EPN_singleperiod.Rd | 3 -- man/Multi_Competing_optimization.Rd |only man/TQpractical.Rd | 9 +++++- man/inventorize.Rd | 2 - man/inventorymetricsCIS.Rd | 12 +++++++- man/inventorymetricsCSL.Rd | 12 +++++++- man/inventorymetricsIFR.Rd | 12 +++++++- man/linear_elasticity.Rd |only man/profit_max_withfixedcost.Rd | 10 +++++-- man/reorderpoint.Rd | 9 +++++- man/reorderpoint_leadtime_variability.Rd | 10 +++++-- man/saftey_stock_normal.Rd | 9 +++++- man/safteystock_CIS_normal.Rd | 12 +++++++- man/safteystock_CSL_normal.Rd | 10 +++++-- man/safteystock_IFR_normal.Rd | 10 +++++-- man/single_product_optimization.Rd |only man/total.logistics.cost.Rd | 15 ++++++++--- 25 files changed, 161 insertions(+), 59 deletions(-)
Title: Functions for Working with Two- And Four-Parameter Beta
Probability Distributions
Description: Package providing a number of functions for working with the Two- and Four-
parameter Beta distributions, including alternative parameterizations and calculation
of moments. Includes functions for estimating classification accuracy, diagnostic
performance and consistency, using what's known as the Livingston and Lewis approach
in the educational-measurement literature as the base method.
Livingston and Lewis (1995) <doi:10.1111/j.1745-3984.1995.tb00462.x>.
Hanson (1991) <https://files.eric.ed.gov/fulltext/ED344945.pdf>.
Glas, Lijmer, Prins, Bonsel and Bossuyt (2003) <doi:10.1016/S0895-4356(03)00177-X>.
Author: Haakon Haakstad
Maintainer: Haakon Haakstad <h.t.haakstad@cemo.uio.no>
Diff between betafunctions versions 1.1.0 dated 2020-05-10 and 1.2.0 dated 2020-06-10
DESCRIPTION | 12 +- MD5 | 47 +++++----- NAMESPACE | 3 NEWS.md | 14 +++ R/betafunctions.R | 162 ++++++++++++++++++++++++++++--------- R/classification.R | 203 ++++++++++++++++++++++++++++++++--------------- README.md | 4 man/Beta.gfx.poly.cdf.Rd | 16 +-- man/Beta.gfx.poly.pdf.Rd | 2 man/Beta.gfx.poly.qdf.Rd | 16 +-- man/LL.CA.Rd | 39 ++++++--- man/LL.ROC.Rd | 8 - man/MLA.Rd | 6 - man/MLB.Rd | 6 - man/MLM.Rd | 2 man/betamoments.Rd | 2 man/cba.Rd | 4 man/ccStats.Rd |only man/dBeta.4P.Rd | 2 man/dBeta.pBeta.Rd |only man/dBeta.pBinom.Rd |only man/observedmoments.Rd | 4 man/pBeta.4P.Rd | 4 man/qBeta.4P.Rd | 8 - man/qBetaMS.Rd | 4 man/rBeta.4P.Rd | 4 26 files changed, 385 insertions(+), 187 deletions(-)
Title: Estimating Fixed Effects Individual Slope Models
Description: Provides the function feis() to estimate fixed effects individual
slope (FEIS) models. The FEIS model constitutes a more general version of
the often-used fixed effects (FE) panel model, as implemented in the
package 'plm' by Croissant and Millo (2008) <doi:10.18637/jss.v027.i02>.
In FEIS models, data are not only person demeaned like in conventional
FE models, but detrended by the predicted individual slope of each
person or group. Estimation is performed by applying least squares lm()
to the transformed data. For more details on FEIS models see Bruederl and
Ludwig (2015, ISBN:1446252442); Frees (2001) <doi:10.2307/3316008>;
Polachek and Kim (1994) <doi:10.1016/0304-4076(94)90075-2>;
Ruettenauer and Ludwig (2020) <doi:10.1177/0049124120926211>;
Wooldridge (2010, ISBN:0262294354). To test consistency of conventional FE
and random effects estimators against heterogeneous slopes, the package
also provides the functions feistest() for an artificial regression test
and bsfeistest() for a bootstrapped version of the Hausman test.
Author: Tobias Ruettenauer [aut, cre] (<https://orcid.org/0000-0001-5747-9735>),
Volker Ludwig [aut] (<https://orcid.org/0000-0003-3118-3172>)
Maintainer: Tobias Ruettenauer <ruettenauer@sowi.uni-kl.de>
Diff between feisr versions 1.0.1 dated 2019-03-01 and 1.1.0 dated 2020-06-10
DESCRIPTION | 26 ++-- MD5 | 46 ++++--- NAMESPACE | 29 ++++ R/feis.R | 123 ++++++++++++++----- R/feisr-package.R |only R/feistest.R | 185 ++++++++++++++++++++-------- R/methods.R |only R/summary_functions.R | 96 +++++++++++--- R/utility_functions.R | 13 +- README.md | 52 ++++---- build/partial.rdb |binary build/vignette.rds |only inst/CITATION |only inst/REFERENCES.bib | 206 +++++++++++++++++++++++++++++--- inst/doc |only man/bsfeistest.Rd | 28 +++- man/feis.Rd | 67 +++++++++- man/feisr-package.Rd |only man/feistest.Rd | 38 ++++- man/model.matrix.feis.Rd |only man/mwp.Rd | 6 man/slopes.Rd | 1 man/summary.feis.Rd | 28 +++- man/summary.feistest.Rd |only man/vcov.feis.Rd |only tests/testthat/test_EstimationResults.R | 21 +++ tests/testthat/test_feistest.R |only tests/testthat/test_methods.R |only vignettes |only 29 files changed, 760 insertions(+), 205 deletions(-)
Title: 'binb' is not 'Beamer'
Description: A collection of 'LaTeX' styles using 'Beamer' customization for
pdf-based presentation slides in 'RMarkdown'. At present it contains
'RMarkdown' adaptations of the LaTeX themes 'Metropolis' (formerly 'mtheme')
theme by Matthias Vogelgesang and others (now included in 'TeXLive'), the
'IQSS' by Ista Zahn (which is included here), and the 'Monash' theme by
Rob J Hyndman. Additional (free) fonts may be needed: 'Metropolis' prefers
'Fira', and 'IQSS' requires 'Libertinus'.
Author: Dirk Eddelbuettel, Ista Zahn and Rob Hyndman
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between binb versions 0.0.5 dated 2019-11-02 and 0.0.6 dated 2020-06-10
binb-0.0.5/binb/inst/rmarkdown/templates/monash/resources/auto |only binb-0.0.5/binb/inst/rmarkdown/templates/monash/skeleton/auto |only binb-0.0.6/binb/ChangeLog | 24 ++++ binb-0.0.6/binb/DESCRIPTION | 10 +- binb-0.0.6/binb/MD5 | 22 ++-- binb-0.0.6/binb/R/binb.R | 10 +- binb-0.0.6/binb/README.md | 9 + binb-0.0.6/binb/build/vignette.rds |binary binb-0.0.6/binb/inst/NEWS.Rd | 11 ++ binb-0.0.6/binb/inst/doc/metropolisDemo.R | 8 - binb-0.0.6/binb/inst/doc/metropolisDemo.pdf |binary binb-0.0.6/binb/inst/rmarkdown/templates/metropolis/resources/template.tex | 4 binb-0.0.6/binb/man/metropolis.Rd | 50 ++++------ 13 files changed, 91 insertions(+), 57 deletions(-)
Title: Client for OGC Sensor Observation Services
Description: A client for Sensor Observation Services (SOS, see
<https://www.opengeospatial.org/standards/sos>) as specified by the
Open Geospatial Consortium (OGC). With the package users can
retrieve (meta)data from SOS instances and interactively
create requests for near real-time observation
data based on the available sensors, phenomena, observations etc.
using thematic, temporal, and spatial filtering.
Author: Daniel Nuest [cre, aut] (<https://orcid.org/0000-0002-0024-5046>),
Edzer Pebesma [ctb] (<https://orcid.org/0000-0001-8049-7069>),
Ben Graeler [aut] (<https://orcid.org/0000-0001-5443-4304>),
Benjamin Pross [aut],
Eike Hinderk Juerrens [aut],
52°North Initiative for Geospatial Open Source Software GmbH [cph]
Maintainer: Daniel Nuest <daniel.nuest@uni-muenster.de>
Diff between sos4R versions 0.4.0 dated 2020-04-29 and 0.4.1 dated 2020-06-10
sos4R-0.4.0/sos4R/vignettes/sos4R.Rnw.old |only sos4R-0.4.1/sos4R/DESCRIPTION | 8 sos4R-0.4.1/sos4R/MD5 | 46 sos4R-0.4.1/sos4R/NEWS.md | 5 sos4R-0.4.1/sos4R/build/vignette.rds |binary sos4R-0.4.1/sos4R/inst/doc/sos4R-vignette-02-ogc-sos.Rmd | 2 sos4R-0.4.1/sos4R/inst/doc/sos4R-vignette-02-ogc-sos.html | 6 sos4R-0.4.1/sos4R/inst/doc/sos4R-vignette-03-sos-operations.Rmd | 2 sos4R-0.4.1/sos4R/inst/doc/sos4R-vignette-03-sos-operations.html | 4932 ++++------ sos4R-0.4.1/sos4R/inst/doc/sos4R-vignette-04-extensions.Rmd | 2 sos4R-0.4.1/sos4R/inst/doc/sos4R-vignette-04-extensions.html | 313 sos4R-0.4.1/sos4R/inst/doc/sos4R-vignette-05-wrapper-functions.R | 1 sos4R-0.4.1/sos4R/inst/doc/sos4R-vignette-05-wrapper-functions.Rmd | 8 sos4R-0.4.1/sos4R/inst/doc/sos4R-vignette-05-wrapper-functions.html | 835 - sos4R-0.4.1/sos4R/inst/doc/sos4R.pdf |binary sos4R-0.4.1/sos4R/man/sos4R-package.Rd | 4 sos4R-0.4.1/sos4R/tests/testthat/test_describesensor.R | 24 sos4R-0.4.1/sos4R/tests/testthat/test_getobservation.R | 2 sos4R-0.4.1/sos4R/tests/testthat/test_sites.R | 19 sos4R-0.4.1/sos4R/vignettes/MO_16.png |only sos4R-0.4.1/sos4R/vignettes/sos4R-vignette-02-ogc-sos.Rmd | 2 sos4R-0.4.1/sos4R/vignettes/sos4R-vignette-03-sos-operations.Rmd | 2 sos4R-0.4.1/sos4R/vignettes/sos4R-vignette-04-extensions.Rmd | 2 sos4R-0.4.1/sos4R/vignettes/sos4R-vignette-05-wrapper-functions.Rmd | 8 sos4R-0.4.1/sos4R/vignettes/sos4R.html | 800 - 25 files changed, 3516 insertions(+), 3507 deletions(-)
Title: Finding Rhythmic and Non-Rhythmic Trends in Multi-Omics Data
(MOSAIC)
Description: Provides a function (mosaic_find()) designed to find rhythmic
and non-rhythmic trends in multi-omics time course data using model
selection and joint modeling, a method called MOSAIC (Multi-Omics
Selection with Amplitude Independent Criteria). For more information,
see H. De los Santos et al. (2020) <doi:10.1101/2020.04.27.064147>.
Author: Hannah De los Santos [aut, cph],
Kristin Bennett [aut],
Jennifer Hurley [aut, cre],
R Development Core Team [aut]
Maintainer: Jennifer Hurley <hurlej2@rpi.edu>
Diff between mosaic.find versions 0.1.0 dated 2020-05-13 and 0.1.1 dated 2020-06-10
DESCRIPTION | 17 ++++++++--------- MD5 | 4 ++-- inst/doc/mosaic-vignette.html | 4 ++-- 3 files changed, 12 insertions(+), 13 deletions(-)
Title: Generate Functions to Get or Set Global Options
Description: It provides more configurations on the option values such as validation
and filtering on the values, making options invisible or private.
Author: Zuguang Gu
Maintainer: Zuguang Gu <z.gu@dkfz.de>
Diff between GlobalOptions versions 0.1.1 dated 2019-09-30 and 0.1.2 dated 2020-06-10
GlobalOptions-0.1.1/GlobalOptions/inst/tests |only GlobalOptions-0.1.2/GlobalOptions/DESCRIPTION | 10 GlobalOptions-0.1.2/GlobalOptions/MD5 | 32 GlobalOptions-0.1.2/GlobalOptions/NAMESPACE | 2 GlobalOptions-0.1.2/GlobalOptions/NEWS | 7 GlobalOptions-0.1.2/GlobalOptions/R/setGlobalOptions.R | 84 GlobalOptions-0.1.2/GlobalOptions/build/vignette.rds |binary GlobalOptions-0.1.2/GlobalOptions/inst/doc/GlobalOptions.R | 66 GlobalOptions-0.1.2/GlobalOptions/inst/doc/GlobalOptions.Rmd | 44 GlobalOptions-0.1.2/GlobalOptions/inst/doc/GlobalOptions.html | 2897 ++++++---- GlobalOptions-0.1.2/GlobalOptions/man/Dot.DollarNames.GlobalOptionsFun.Rd | 1 GlobalOptions-0.1.2/GlobalOptions/man/Subset.InternalOptionValue.Rd | 1 GlobalOptions-0.1.2/GlobalOptions/man/names.GlobalOptionsFun.Rd |only GlobalOptions-0.1.2/GlobalOptions/man/print.GlobalOptionsFun.Rd | 1 GlobalOptions-0.1.2/GlobalOptions/man/setGlobalOptions.Rd | 7 GlobalOptions-0.1.2/GlobalOptions/man/set_opt.Rd | 1 GlobalOptions-0.1.2/GlobalOptions/tests/testthat/test.R | 3 GlobalOptions-0.1.2/GlobalOptions/vignettes/GlobalOptions.Rmd | 44 18 files changed, 2101 insertions(+), 1099 deletions(-)
Title: Parsing Command-Line Arguments and Simple Variable Interpolation
Description: This is a command-line argument parser which wraps the
powerful Perl module Getopt::Long and with some adaptations for easier use
in R. It also provides a simple way for variable interpolation in R.
Author: Zuguang Gu
Maintainer: Zuguang Gu <z.gu@dkfz.de>
Diff between GetoptLong versions 0.1.8 dated 2020-01-08 and 1.0.0 dated 2020-06-10
GetoptLong-0.1.8/GetoptLong/R/GetoptLong.R |only GetoptLong-1.0.0/GetoptLong/DESCRIPTION | 18 GetoptLong-1.0.0/GetoptLong/MD5 | 53 GetoptLong-1.0.0/GetoptLong/NAMESPACE | 2 GetoptLong-1.0.0/GetoptLong/NEWS | 8 GetoptLong-1.0.0/GetoptLong/R/0_global.R | 59 GetoptLong-1.0.0/GetoptLong/R/SingleOption-class.R |only GetoptLong-1.0.0/GetoptLong/R/get_options.R |only GetoptLong-1.0.0/GetoptLong/R/opt_utils.R |only GetoptLong-1.0.0/GetoptLong/R/perl.R |only GetoptLong-1.0.0/GetoptLong/R/print.R |only GetoptLong-1.0.0/GetoptLong/R/qq.R | 11 GetoptLong-1.0.0/GetoptLong/build/vignette.rds |binary GetoptLong-1.0.0/GetoptLong/inst/doc/GetoptLong.R | 315 - GetoptLong-1.0.0/GetoptLong/inst/doc/GetoptLong.Rmd | 857 ++ GetoptLong-1.0.0/GetoptLong/inst/doc/GetoptLong.html | 3015 ++++++++-- GetoptLong-1.0.0/GetoptLong/inst/doc/variable_interpolation.R | 61 GetoptLong-1.0.0/GetoptLong/inst/doc/variable_interpolation.Rmd | 150 GetoptLong-1.0.0/GetoptLong/inst/doc/variable_interpolation.html | 2147 +++++-- GetoptLong-1.0.0/GetoptLong/man/GetOptions.Rd | 6 GetoptLong-1.0.0/GetoptLong/man/GetoptLong.Rd | 47 GetoptLong-1.0.0/GetoptLong/man/GetoptLong.options.Rd | 19 GetoptLong-1.0.0/GetoptLong/man/get_scriptdir.Rd | 4 GetoptLong-1.0.0/GetoptLong/man/get_scriptname.Rd | 4 GetoptLong-1.0.0/GetoptLong/man/qq.Rd | 11 GetoptLong-1.0.0/GetoptLong/man/qq.options.Rd | 10 GetoptLong-1.0.0/GetoptLong/man/source_script.Rd |only GetoptLong-1.0.0/GetoptLong/tests/testthat/test_GetoptLong.R | 143 GetoptLong-1.0.0/GetoptLong/tests/testthat/test_qq.R | 2 GetoptLong-1.0.0/GetoptLong/vignettes/GetoptLong.Rmd | 857 ++ GetoptLong-1.0.0/GetoptLong/vignettes/variable_interpolation.Rmd | 150 31 files changed, 6238 insertions(+), 1711 deletions(-)
Title: Finding Rhythms Using Extended Circadian Harmonic Oscillators
(ECHO)
Description: Provides a function (echo_find()) designed to find rhythms
from data using extended harmonic oscillators. For more information,
see H. De los Santos et al. (2020) <doi:10.1093/bioinformatics/btz617> .
Author: Hannah De los Santos [aut],
Emily Collins [aut],
Kristin Bennett [aut],
Jennifer Hurley [aut, cre],
R Development Core Team [aut]
Maintainer: Jennifer Hurley <hurlej2@rpi.edu>
Diff between echo.find versions 4.0 dated 2020-05-28 and 4.0.1 dated 2020-06-10
DESCRIPTION | 17 ++++++++--------- MD5 | 4 ++-- inst/doc/echo-vignette.html | 4 ++-- 3 files changed, 12 insertions(+), 13 deletions(-)
Title: Regularization Paths for Regression Models with Grouped
Covariates
Description: Efficient algorithms for fitting the regularization path of linear
regression, GLM, and Cox regression models with grouped penalties. This
includes group selection methods such as group lasso, group MCP, and
group SCAD as well as bi-level selection methods such as the group
exponential lasso, the composite MCP, and the group bridge.
Author: Patrick Breheny [aut, cre] (<https://orcid.org/0000-0002-0650-1119>),
Yaohui Zeng [ctb]
Maintainer: Patrick Breheny <patrick-breheny@uiowa.edu>
Diff between grpreg versions 3.2.2 dated 2020-02-19 and 3.3.0 dated 2020-06-10
grpreg-3.2.2/grpreg/inst/testing-functions.R |only grpreg-3.2.2/grpreg/inst/tests/standardization-orthogonalization.R |only grpreg-3.2.2/grpreg/tests/run |only grpreg-3.3.0/grpreg/DESCRIPTION | 10 grpreg-3.3.0/grpreg/MD5 | 52 +-- grpreg-3.3.0/grpreg/NEWS | 8 grpreg-3.3.0/grpreg/R/newY.R | 2 grpreg-3.3.0/grpreg/README.md | 8 grpreg-3.3.0/grpreg/build/vignette.rds |binary grpreg-3.3.0/grpreg/inst/doc/getting-started.html | 150 +++++----- grpreg-3.3.0/grpreg/inst/tests/_median-survfit.R |only grpreg-3.3.0/grpreg/inst/tests/agreement.R | 35 +- grpreg-3.3.0/grpreg/inst/tests/basic-functionality.R | 80 ++--- grpreg-3.3.0/grpreg/inst/tests/coerce.R | 20 - grpreg-3.3.0/grpreg/inst/tests/extra-features.R | 91 +++--- grpreg-3.3.0/grpreg/inst/tests/grpsurv.R | 32 +- grpreg-3.3.0/grpreg/inst/tests/multitask.R | 61 ++-- grpreg-3.3.0/grpreg/inst/tests/noiseless.R |only grpreg-3.3.0/grpreg/inst/tests/standardization-ortho.R |only grpreg-3.3.0/grpreg/inst/tests/surv-torture.R | 38 +- grpreg-3.3.0/grpreg/inst/tests/torture.R | 36 +- grpreg-3.3.0/grpreg/man/grpreg-package.Rd | 3 grpreg-3.3.0/grpreg/man/grpreg.Rd | 14 grpreg-3.3.0/grpreg/src/gdfit_gaussian.c | 53 +-- grpreg-3.3.0/grpreg/tests/test.R |only 25 files changed, 340 insertions(+), 353 deletions(-)
Title: Interface to 'Azure Resource Manager'
Description: A lightweight but powerful R interface to the 'Azure Resource Manager' REST API. The package exposes a comprehensive class framework and related tools for creating, updating and deleting 'Azure' resource groups, resources and templates. While 'AzureRMR' can be used to manage any 'Azure' service, it can also be extended by other packages to provide extra functionality for specific services. Part of the 'AzureR' family of packages.
Author: Hong Ooi [aut, cre],
Microsoft [cph]
Maintainer: Hong Ooi <hongooi@microsoft.com>
Diff between AzureRMR versions 2.3.3 dated 2020-05-15 and 2.3.4 dated 2020-06-10
DESCRIPTION | 6 +++--- MD5 | 30 +++++++++++++++--------------- NEWS.md | 6 ++++++ R/az_resgroup.R | 37 ++++++++++++++++++++++++------------- R/az_resource.R | 1 + R/az_subscription.R | 32 +++++++++++++++++++++----------- R/az_template.R | 11 ++++++++++- R/utils.R | 9 +++++++++ README.md | 2 +- man/az_resource_group.Rd | 10 +++++----- man/az_subscription.Rd | 6 +++--- man/az_template.Rd | 1 + tests/testthat/test02_sub.R | 20 ++++++++++++++++++++ tests/testthat/test03_rg.R | 6 +++--- tests/testthat/test04_resource.R | 37 ++++++++++++++++++++++++++++++------- tests/testthat/test05b_template.R | 13 +++++++++++++ 16 files changed, 165 insertions(+), 62 deletions(-)
Title: Miscellaneous Useful Functions for Statistics
Description: A series of functions in some way considered useful to the author. These include functions for subsetting tables and generating indices for arrays, conditioning and intervening in probability distributions, generating combinations and more...
Author: Robin Evans [aut, cre],
Mathias Drton [ctb]
Maintainer: Robin Evans <evans@stats.ox.ac.uk>
Diff between rje versions 1.10.15 dated 2020-03-04 and 1.10.16 dated 2020-06-10
rje-1.10.15/rje/man/rje-package.Rd |only rje-1.10.16/rje/DESCRIPTION | 6 rje-1.10.16/rje/MD5 | 23 +-- rje-1.10.16/rje/R/powerSet.R | 20 +-- rje-1.10.16/rje/R/quickSort.R | 6 rje-1.10.16/rje/R/rje.R | 8 - rje-1.10.16/rje/build/vignette.rds |binary rje-1.10.16/rje/inst/doc/conditional_distributions.R | 22 +-- rje-1.10.16/rje/inst/doc/conditional_distributions.html | 103 +++++++--------- rje-1.10.16/rje/man/powerSet.Rd | 8 - rje-1.10.16/rje/man/quickSort.Rd | 2 rje-1.10.16/rje/man/rje.Rd |only rje-1.10.16/rje/tests/testthat/test-powerSet.R |only rje-1.10.16/rje/tests/testthat/test-quickSort.R | 1 14 files changed, 99 insertions(+), 100 deletions(-)
Title: Load US Census Boundary and Attribute Data as 'tidyverse' and
'sf'-Ready Data Frames
Description: An integrated R interface to the decennial US Census and American Community Survey APIs and
the US Census Bureau's geographic boundary files. Allows R users to return Census and ACS data as
tidyverse-ready data frames, and optionally returns a list-column with feature geometry for many
geographies.
Author: Kyle Walker [aut, cre],
Kris Eberwein [ctb],
Matt Herman [ctb]
Maintainer: Kyle Walker <kyle.walker@tcu.edu>
Diff between tidycensus versions 0.9.9.2 dated 2020-04-03 and 0.9.9.5 dated 2020-06-10
tidycensus-0.9.9.2/tidycensus/data/datalist |only tidycensus-0.9.9.5/tidycensus/DESCRIPTION | 10 +-- tidycensus-0.9.9.5/tidycensus/MD5 | 21 +++---- tidycensus-0.9.9.5/tidycensus/R/acs.R | 63 +---------------------- tidycensus-0.9.9.5/tidycensus/R/census.R | 2 tidycensus-0.9.9.5/tidycensus/R/estimates.R | 46 +++++++++++++--- tidycensus-0.9.9.5/tidycensus/R/helpers.R | 20 ++++++- tidycensus-0.9.9.5/tidycensus/R/load_data.R | 22 +++++--- tidycensus-0.9.9.5/tidycensus/R/moe.R | 2 tidycensus-0.9.9.5/tidycensus/man/county_laea.Rd | 4 + tidycensus-0.9.9.5/tidycensus/man/fips_codes.Rd | 4 + tidycensus-0.9.9.5/tidycensus/man/state_laea.Rd | 4 + 12 files changed, 99 insertions(+), 99 deletions(-)
Title: Tools for Creating Tuning Parameter Values
Description: Many models contain tuning parameters (i.e. parameters that cannot be directly estimated from the data). These tools can be used to define objects for creating, simulating, or validating values for such parameters.
Author: Max Kuhn [aut, cre],
RStudio [cph]
Maintainer: Max Kuhn <max@rstudio.com>
Diff between dials versions 0.0.6 dated 2020-04-03 and 0.0.7 dated 2020-06-10
dials-0.0.6/dials/R/aaa.R |only dials-0.0.6/dials/R/dplyr-compat-grid.R |only dials-0.0.6/dials/R/dplyr-compat-set.R |only dials-0.0.6/dials/R/param_set.R |only dials-0.0.6/dials/tests/testthat/helper-functions.R |only dials-0.0.6/dials/tests/testthat/test_deprecated.R |only dials-0.0.6/dials/tests/testthat/test_dplyr_grid_compat.R |only dials-0.0.6/dials/tests/testthat/test_dplyr_set_compat.R |only dials-0.0.6/dials/tests/testthat/test_param_set.R |only dials-0.0.6/dials/tests/testthat/test_parameters.R |only dials-0.0.7/dials/DESCRIPTION | 10 - dials-0.0.7/dials/MD5 | 77 +++++----- dials-0.0.7/dials/NAMESPACE | 19 ++ dials-0.0.7/dials/NEWS.md | 15 + dials-0.0.7/dials/R/0_imports.R | 2 dials-0.0.7/dials/R/compat-dplyr-old-parameters.R |only dials-0.0.7/dials/R/compat-dplyr-parameters.R |only dials-0.0.7/dials/R/compat-vctrs-helpers-parameters.R |only dials-0.0.7/dials/R/compat-vctrs-parameters.R |only dials-0.0.7/dials/R/finalize.R | 2 dials-0.0.7/dials/R/grids.R | 47 ++++-- dials-0.0.7/dials/R/param_dist_power.R | 2 dials-0.0.7/dials/R/param_mixture.R | 4 dials-0.0.7/dials/R/param_num_tokens.R |only dials-0.0.7/dials/R/param_predictor_prop.R |only dials-0.0.7/dials/R/param_svm.R | 18 -- dials-0.0.7/dials/R/parameters.R |only dials-0.0.7/dials/R/space_filling.R | 14 + dials-0.0.7/dials/R/zzz.R |only dials-0.0.7/dials/README.md | 6 dials-0.0.7/dials/build/vignette.rds |binary dials-0.0.7/dials/man/cost.Rd | 8 - dials-0.0.7/dials/man/dist_power.Rd | 2 dials-0.0.7/dials/man/finalize.Rd | 2 dials-0.0.7/dials/man/grid_max_entropy.Rd | 30 +++ dials-0.0.7/dials/man/grid_regular.Rd | 42 ++++- dials-0.0.7/dials/man/mixture.Rd | 4 dials-0.0.7/dials/man/num_tokens.Rd |only dials-0.0.7/dials/man/parameters.Rd | 2 dials-0.0.7/dials/man/parameters_constr.Rd | 2 dials-0.0.7/dials/man/predictor_prop.Rd |only dials-0.0.7/dials/man/rmd |only dials-0.0.7/dials/man/update.parameters.Rd | 2 dials-0.0.7/dials/tests/testthat/helper-s3.R |only dials-0.0.7/dials/tests/testthat/test-compat-dplyr-old-parameters.R |only dials-0.0.7/dials/tests/testthat/test-compat-dplyr-parameters.R |only dials-0.0.7/dials/tests/testthat/test-compat-vctrs-helpers-parameters.R |only dials-0.0.7/dials/tests/testthat/test-compat-vctrs-parameters.R |only dials-0.0.7/dials/tests/testthat/test-parameters.R |only dials-0.0.7/dials/tests/testthat/test_grid.R | 33 ++-- dials-0.0.7/dials/tests/testthat/test_qual_params.R |only dials-0.0.7/dials/tests/testthat/test_space_filling.R | 24 --- 52 files changed, 221 insertions(+), 146 deletions(-)
Title: Datasets to Align Financial Markets with Climate Goals
Description: These datasets support the implementation in R of
the software 'PACTA' (Paris Agreement Capital Transition Assessment),
which is a free tool that calculates the alignment between financial
assets and climate scenarios (<https://2degrees-investing.org/>).
Financial institutions use 'PACTA' to study how their capital
allocation impacts the climate. Because both financial institutions
and market data providers keep their data private, this package
provides fake, public data to enable the development and use of
'PACTA' in R.
Author: Mauro Lepore [aut, cre, ctr] (<https://orcid.org/0000-0002-1986-7988>),
Jackson Hoffart [aut, dtc] (<https://orcid.org/0000-0002-8600-5042>),
Klaus Hagedorn [aut],
2 Degrees Investing Initiative [cph, fnd]
Maintainer: Mauro Lepore <maurolepore@gmail.com>
Diff between r2dii.data versions 0.1.0 dated 2020-06-03 and 0.1.1 dated 2020-06-10
DESCRIPTION | 6 +++--- MD5 | 20 ++++++++++---------- NEWS.md | 4 ++++ README.md | 5 ++--- data/data_dictionary.rda |binary data/naics_classification.rda |binary data/sector_classifications.rda |binary man/naics_classification.Rd | 6 +++--- man/sector_classifications.Rd | 2 +- tests/testthat/ref-data_dictionary |binary tests/testthat/ref-sector_classifications |binary 11 files changed, 23 insertions(+), 20 deletions(-)
Title: Integrating Phylogenies and Ecology
Description: Functions for phylocom integration, community analyses, null-models, traits and evolution. Implements numerous ecophylogenetic approaches including measures of community phylogenetic and trait diversity, phylogenetic signal, estimation of trait values for unobserved taxa, null models for community and phylogeny randomizations, and utility functions for data input/output and phylogeny plotting. A full description of package functionality and methods are provided by Kembel et al. (2010) <doi:10.1093/bioinformatics/btq166>.
Author: Steven W. Kembel <steve.kembel@gmail.com>, David D. Ackerly <dackerly@berkeley.edu>, Simon P. Blomberg <s.blomberg1@uq.edu.au>, Will K. Cornwell <cornwell@zoology.ubc.ca>, Peter D. Cowan <pdc@berkeley.edu>, Matthew R. Helmus <mrhelmus@wisc.edu>, Helene Morlon <morlon.helene@gmail.com>, Campbell O. Webb <cwebb@oeb.harvard.edu>
Maintainer: Steven W. Kembel <steve.kembel@gmail.com>
Diff between picante versions 1.8.1 dated 2020-02-13 and 1.8.2 dated 2020-06-10
DESCRIPTION | 8 - MD5 | 12 - R/pblmpredict.R | 341 ++++++++++++++++++++++----------------------- R/utility.R | 7 build/vignette.rds |binary inst/doc/picante-intro.pdf |binary man/picante-package.Rd | 4 7 files changed, 187 insertions(+), 185 deletions(-)
Title: Explainable Outlier Detection Through Decision Tree Conditioning
Description: Will try to fit decision trees that try to "predict" values for each column based on the values of each other column.
Along the way, each time a split is evaluated, it will take the observations that fall into each branch as a homogeneous
cluster in which it will search for outliers in the 1-d distribution of the column being predicted. Outliers are determined
according to confidence intervals in this 1-d distribution, and need to have a large gap with respect to the next observation
in sorted order to be flagged as outliers. Since outliers are searched for in a decision tree branch, it will know the conditions
that make it a rare observation compared to others that meet the same conditions, and the conditions will always be correlated
with the target variable (as it's being predicted from them). Full procedure is described in Cortes (2020) <arXiv:2001.00636>.
Loosely based on the 'GritBot' <https://www.rulequest.com/gritbot-info.html> software.
Author: David Cortes
Maintainer: David Cortes <david.cortes.rivera@gmail.com>
Diff between outliertree versions 1.2.0 dated 2020-04-19 and 1.3.0 dated 2020-06-10
DESCRIPTION | 10 ++-- MD5 | 24 +++++----- R/helpers.R | 87 ++++++++++++++++++++++++--------------- R/outliertree.R | 29 ++++++++----- man/hypothyroid.Rd | 4 + man/outlier.tree.Rd | 13 ++++- man/predict.outliertree.Rd | 13 +++++ man/print.outlieroutputs.Rd | 6 ++ src/Rwrapper.cpp | 24 ++++++++++ src/fit_model.cpp | 13 ++++- src/misc.cpp | 80 ++++++++++++++++++++++++++++++++--- src/outlier_tree.h | 98 +++++++++++++++++--------------------------- src/predict.cpp | 6 +- 13 files changed, 270 insertions(+), 137 deletions(-)
Title: Stratified Medicine
Description: A toolkit for stratified medicine, subgroup identification, and precision medicine.
Current tools include (1) filtering models (reduce covariate space), (2) patient-level estimate
models (counterfactual patient-level quantities, for example the individual treatment effect),
(3) subgroup identification models (find subsets of patients with similar treatment effects),
and (4) parameter estimation and inference (for the overall population and discovered subgroups).
These tools can directly feed into stratified medicine algorithms including PRISM
(patient response identifiers for stratified medicine; Jemielita and Mehrotra 2019
<arXiv:1912.03337>. PRISM is a flexible and general framework which accepts
user-created models/functions. This package is in beta and will be continually updated.
Author: Thomas Jemielita [aut, cre]
Maintainer: Thomas Jemielita <thomasjemielita@gmail.com>
Diff between StratifiedMedicine versions 0.2.3 dated 2020-04-22 and 1.0.0 dated 2020-06-10
StratifiedMedicine-0.2.3/StratifiedMedicine/R/filter_glmnet.R |only StratifiedMedicine-0.2.3/StratifiedMedicine/R/filter_ranger.R |only StratifiedMedicine-0.2.3/StratifiedMedicine/R/param_cox.R |only StratifiedMedicine-0.2.3/StratifiedMedicine/R/param_dr.R |only StratifiedMedicine-0.2.3/StratifiedMedicine/R/param_lm.R |only StratifiedMedicine-0.2.3/StratifiedMedicine/R/param_ple.R |only StratifiedMedicine-0.2.3/StratifiedMedicine/R/param_rmst.R |only StratifiedMedicine-0.2.3/StratifiedMedicine/R/ple_bart.R |only StratifiedMedicine-0.2.3/StratifiedMedicine/R/ple_causal_forest.R |only StratifiedMedicine-0.2.3/StratifiedMedicine/R/ple_glmnet.R |only StratifiedMedicine-0.2.3/StratifiedMedicine/R/ple_ranger.R |only StratifiedMedicine-0.2.3/StratifiedMedicine/R/ple_rfsrc.R |only StratifiedMedicine-0.2.3/StratifiedMedicine/R/plot_tree.R |only StratifiedMedicine-0.2.3/StratifiedMedicine/R/submod_ctree.R |only StratifiedMedicine-0.2.3/StratifiedMedicine/R/submod_glmtree.R |only StratifiedMedicine-0.2.3/StratifiedMedicine/R/submod_lmtree.R |only StratifiedMedicine-0.2.3/StratifiedMedicine/R/submod_otr.R |only StratifiedMedicine-0.2.3/StratifiedMedicine/R/submod_rpart.R |only StratifiedMedicine-0.2.3/StratifiedMedicine/R/submod_weibull.R |only StratifiedMedicine-0.2.3/StratifiedMedicine/man/filter_glmnet.Rd |only StratifiedMedicine-0.2.3/StratifiedMedicine/man/filter_ranger.Rd |only StratifiedMedicine-0.2.3/StratifiedMedicine/man/param_cox.Rd |only StratifiedMedicine-0.2.3/StratifiedMedicine/man/param_dr.Rd |only StratifiedMedicine-0.2.3/StratifiedMedicine/man/param_lm.Rd |only StratifiedMedicine-0.2.3/StratifiedMedicine/man/param_ple.Rd |only StratifiedMedicine-0.2.3/StratifiedMedicine/man/param_rmst.Rd |only StratifiedMedicine-0.2.3/StratifiedMedicine/man/ple_bart.Rd |only StratifiedMedicine-0.2.3/StratifiedMedicine/man/ple_causal_forest.Rd |only StratifiedMedicine-0.2.3/StratifiedMedicine/man/ple_glmnet.Rd |only StratifiedMedicine-0.2.3/StratifiedMedicine/man/ple_ranger.Rd |only StratifiedMedicine-0.2.3/StratifiedMedicine/man/ple_rfsrc.Rd |only StratifiedMedicine-0.2.3/StratifiedMedicine/man/submod_ctree.Rd |only StratifiedMedicine-0.2.3/StratifiedMedicine/man/submod_glmtree.Rd |only StratifiedMedicine-0.2.3/StratifiedMedicine/man/submod_lmtree.Rd |only StratifiedMedicine-0.2.3/StratifiedMedicine/man/submod_otr.Rd |only StratifiedMedicine-0.2.3/StratifiedMedicine/man/submod_rpart.Rd |only StratifiedMedicine-0.2.3/StratifiedMedicine/man/submod_weibull.Rd |only StratifiedMedicine-0.2.3/StratifiedMedicine/tests/testthat/test-param_preds_plots.R |only StratifiedMedicine-0.2.3/StratifiedMedicine/tests/testthat/test-ple_preds_plots.R |only StratifiedMedicine-0.2.3/StratifiedMedicine/tests/testthat/test-submod_preds_plots.R |only StratifiedMedicine-1.0.0/StratifiedMedicine/DESCRIPTION | 12 StratifiedMedicine-1.0.0/StratifiedMedicine/MD5 | 139 -- StratifiedMedicine-1.0.0/StratifiedMedicine/NAMESPACE | 61 - StratifiedMedicine-1.0.0/StratifiedMedicine/NEWS.md |only StratifiedMedicine-1.0.0/StratifiedMedicine/R/PRISM.R | 178 +-- StratifiedMedicine-1.0.0/StratifiedMedicine/R/PRISM_resamp.R | 68 - StratifiedMedicine-1.0.0/StratifiedMedicine/R/PRISM_train.R | 92 + StratifiedMedicine-1.0.0/StratifiedMedicine/R/filter_train.R | 74 + StratifiedMedicine-1.0.0/StratifiedMedicine/R/learners.R |only StratifiedMedicine-1.0.0/StratifiedMedicine/R/meta_learners.R |only StratifiedMedicine-1.0.0/StratifiedMedicine/R/param_combine.R | 8 StratifiedMedicine-1.0.0/StratifiedMedicine/R/param_est.R |only StratifiedMedicine-1.0.0/StratifiedMedicine/R/ple_train.R | 157 ++ StratifiedMedicine-1.0.0/StratifiedMedicine/R/plot.R | 63 - StratifiedMedicine-1.0.0/StratifiedMedicine/R/plot_dependence.R | 157 +- StratifiedMedicine-1.0.0/StratifiedMedicine/R/plot_forest.R | 3 StratifiedMedicine-1.0.0/StratifiedMedicine/R/plot_ggparty.R |only StratifiedMedicine-1.0.0/StratifiedMedicine/R/plot_importance.R | 24 StratifiedMedicine-1.0.0/StratifiedMedicine/R/plot_ple.R | 109 + StratifiedMedicine-1.0.0/StratifiedMedicine/R/plot_resample.R | 35 StratifiedMedicine-1.0.0/StratifiedMedicine/R/submod_train.R | 113 +- StratifiedMedicine-1.0.0/StratifiedMedicine/R/utils.R | 72 + StratifiedMedicine-1.0.0/StratifiedMedicine/README.md | 104 - StratifiedMedicine-1.0.0/StratifiedMedicine/inst/doc/SM_PRISM.R | 165 +- StratifiedMedicine-1.0.0/StratifiedMedicine/inst/doc/SM_PRISM.Rmd | 284 +++-- StratifiedMedicine-1.0.0/StratifiedMedicine/inst/doc/SM_PRISM.html | 561 +++++----- StratifiedMedicine-1.0.0/StratifiedMedicine/inst/doc/SM_User_Models.R | 122 -- StratifiedMedicine-1.0.0/StratifiedMedicine/inst/doc/SM_User_Models.Rmd | 146 +- StratifiedMedicine-1.0.0/StratifiedMedicine/inst/doc/SM_User_Models.html | 186 +-- StratifiedMedicine-1.0.0/StratifiedMedicine/man/PRISM.Rd | 140 +- StratifiedMedicine-1.0.0/StratifiedMedicine/man/figures/README-example-1.png |binary StratifiedMedicine-1.0.0/StratifiedMedicine/man/figures/README-example-2.png |binary StratifiedMedicine-1.0.0/StratifiedMedicine/man/figures/README-example-3.png |binary StratifiedMedicine-1.0.0/StratifiedMedicine/man/figures/README-example-4.png |binary StratifiedMedicine-1.0.0/StratifiedMedicine/man/figures/README-example-5.png |binary StratifiedMedicine-1.0.0/StratifiedMedicine/man/figures/README-example-6.png |binary StratifiedMedicine-1.0.0/StratifiedMedicine/man/figures/README-example-7.png |binary StratifiedMedicine-1.0.0/StratifiedMedicine/man/figures/README-example-8.png |binary StratifiedMedicine-1.0.0/StratifiedMedicine/man/filter_train.Rd | 77 + StratifiedMedicine-1.0.0/StratifiedMedicine/man/param_combine.Rd | 7 StratifiedMedicine-1.0.0/StratifiedMedicine/man/param_est.Rd |only StratifiedMedicine-1.0.0/StratifiedMedicine/man/ple_train.Rd | 99 + StratifiedMedicine-1.0.0/StratifiedMedicine/man/plot.PRISM.Rd | 10 StratifiedMedicine-1.0.0/StratifiedMedicine/man/plot_dependence.Rd | 33 StratifiedMedicine-1.0.0/StratifiedMedicine/man/plot_importance.Rd | 11 StratifiedMedicine-1.0.0/StratifiedMedicine/man/plot_ple.Rd |only StratifiedMedicine-1.0.0/StratifiedMedicine/man/predict.PRISM.Rd | 10 StratifiedMedicine-1.0.0/StratifiedMedicine/man/predict.ple_train.Rd | 9 StratifiedMedicine-1.0.0/StratifiedMedicine/man/predict.submod_train.Rd | 11 StratifiedMedicine-1.0.0/StratifiedMedicine/man/submod_train.Rd | 97 + StratifiedMedicine-1.0.0/StratifiedMedicine/tests/testthat/test-param_est.R |only StratifiedMedicine-1.0.0/StratifiedMedicine/tests/testthat/test_filter_train.R |only StratifiedMedicine-1.0.0/StratifiedMedicine/tests/testthat/test_ple_train.R |only StratifiedMedicine-1.0.0/StratifiedMedicine/tests/testthat/test_ple_train_A3.R |only StratifiedMedicine-1.0.0/StratifiedMedicine/vignettes/SM_PRISM.Rmd | 284 +++-- StratifiedMedicine-1.0.0/StratifiedMedicine/vignettes/SM_User_Models.Rmd | 146 +- 96 files changed, 2288 insertions(+), 1579 deletions(-)
More information about StratifiedMedicine at CRAN
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Title: Utility Functions and Data Sets for Data Visualization
Description: Supporting materials for a course and book on data visualization. It contains utility functions for graphs and several sample data sets. See Healy (2019) <ISBN 978-0691181622>.
Author: Kieran Healy [aut, cre]
Maintainer: Kieran Healy <kjhealy@gmail.com>
Diff between socviz versions 1.1 dated 2020-02-19 and 1.2 dated 2020-06-10
DESCRIPTION | 8 ++-- MD5 | 56 ++++++++++++++--------------- R/data.r | 2 - README.md | 88 ++++++++++++++++++---------------------------- data/yahoo.rda |binary man/asasec.Rd | 4 +- man/bad_date.Rd | 4 +- man/boomer.Rd | 4 +- man/color_table.Rd | 4 +- man/county_data.Rd | 4 +- man/county_map.Rd | 4 +- man/edu.Rd | 4 +- man/election.Rd | 4 +- man/elections_historic.Rd | 4 +- man/fredts.Rd | 4 +- man/gss_lon.Rd | 4 +- man/gss_sib.Rd | 4 +- man/gss_sm.Rd | 4 +- man/lawschools.Rd | 4 +- man/maunaloa.Rd | 4 +- man/oecd_le.Rd | 4 +- man/oecd_sum.Rd | 4 +- man/opiates.Rd | 4 +- man/organdata.Rd | 4 +- man/preg.Rd | 4 +- man/preg2.Rd | 4 +- man/studebt.Rd | 4 +- man/titanic.Rd | 4 +- man/yahoo.Rd | 4 +- 29 files changed, 141 insertions(+), 109 deletions(-)
Title: Model Wrappers for Rule-Based Models
Description: Bindings for additional models for use with the 'parsnip' package.
Models include prediction rule ensembles (Friedman and Popescu, 2008)
<doi:10.1214/07-AOAS148>, C5.0 rules (Quinlan, 1992 ISBN: 1558602380), and
Cubist (Kuhn and Johnson, 2013) <doi:10.1007/978-1-4614-6849-3>.
Author: Max Kuhn [aut, cre] (<https://orcid.org/0000-0003-2402-136X>),
RStudio [cph]
Maintainer: Max Kuhn <max@rstudio.com>
Diff between rules versions 0.0.1 dated 2020-05-20 and 0.0.2 dated 2020-06-10
DESCRIPTION | 6 +-- MD5 | 23 ++++++------- NEWS.md |only R/0_imports.R | 2 - R/C5_rules.R | 6 +-- R/cubist.R | 6 +-- R/rule_fit.R | 51 +++++++++++++++-------------- man/rule_fit.Rd | 5 ++ tests/testthat/test-c5.R | 6 +-- tests/testthat/test-cubist.R | 4 +- tests/testthat/test-rule-fit-binomial.R | 16 ++++----- tests/testthat/test-rule-fit-multinomial.R | 16 ++++----- tests/testthat/test-rule-fit-regression.R | 8 ++-- 13 files changed, 78 insertions(+), 71 deletions(-)
Title: A Collection of Useful Functions by John
Description: A set of general functions that I have used in various
projects and in other R packages. They support some miscellaneous operations
on data frames, matrices and vectors like adding a row on a ternary (3-value)
data.frame based on positive and negative vector-indicators, rearranging a
list of data.frames by rownames, pruning rows or columns of a data.frame
that contain only one specific value given by the user,
pruning and reordering a vector according to the common elements between its
names and elements of another given vector, finding the non-common elements
between two vectors (outer-section),
normalization of a vector, matrix or data.frame's numeric values in a specified range,
pretty printing of vector names and values in an R Markdown document.
Also included is a function that returns the statistics needed for plotting a ROC curve.
Author: John Zobolas [aut, cph, cre] (<https://orcid.org/0000-0002-3609-8674>)
Maintainer: John Zobolas <bblodfon@gmail.com>
Diff between usefun versions 0.4.6 dated 2020-05-29 and 0.4.7 dated 2020-06-10
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- NEWS.md | 4 ++++ 3 files changed, 10 insertions(+), 6 deletions(-)
Title: Stacked Elastic Net
Description: Implements stacked elastic net regression (Rauschenberger 2020, <doi:10.1093/bioinformatics/btaa535>). The elastic net generalises ridge and lasso regularisation (Zou 2005, <doi:10.1111/j.1467-9868.2005.00503.x>). Instead of fixing or tuning the mixing parameter alpha, we combine multiple alpha by stacked generalisation (Wolpert 1992 <doi:10.1016/S0893-6080(05)80023-1>).
Author: Armin Rauschenberger [aut, cre]
Maintainer: Armin Rauschenberger <armin.rauschenberger@uni.lu>
Diff between starnet versions 0.0.2 dated 2020-06-08 and 0.0.3 dated 2020-06-10
DESCRIPTION | 6 +++--- MD5 | 20 ++++++++++---------- R/functions.R | 12 ++++++------ build/partial.rdb |binary inst/doc/script.html | 4 ++-- man/coef.starnet.Rd | 2 +- man/predict.starnet.Rd | 2 +- man/print.starnet.Rd | 2 +- man/starnet.Rd | 2 +- man/weights.starnet.Rd | 2 +- tests/testthat/test.R | 2 +- 11 files changed, 27 insertions(+), 27 deletions(-)
Title: Data on Base Packages for Current and Previous Versions of R
Description: Provides a dataset of functions in all base packages of R versions 1.0.1 onwards.
Author: David Hugh-Jones [aut, cre]
Maintainer: David Hugh-Jones <davidhughjones@gmail.com>
Diff between rcheology versions 4.0.0.0 dated 2020-04-30 and 4.0.1.0 dated 2020-06-10
DESCRIPTION | 8 +- MD5 | 18 +++--- NEWS.md | 4 + R/rcheology.R | 16 ----- README.md | 88 ++----------------------------- data/Rversions.rda |binary data/rcheology.rda |binary man/figures/README-unnamed-chunk-5-1.png |binary man/figures/README-unnamed-chunk-6-1.png |binary man/rcheology-package.Rd | 34 +++++++---- 10 files changed, 46 insertions(+), 122 deletions(-)
Title: k-Nearest Neighbor Join for Spatial Data
Description: K-nearest neighbor search for projected and non-projected 'sf' spatial layers. Nearest neighbor search uses (1) C code from 'GeographicLib' for lon-lat point layers, (2) function nn2() from package 'RANN' for projected point layers, or (3) function st_distance() from package 'sf' for line or polygon layers. The package also includes several other utility functions for spatial analysis.
Author: Michael Dorman [aut, cre],
Johnathan Rush [ctb],
Ian Hough [ctb],
Dominic Russel [ctb],
Charles F.F Karney [ctb, cph] (Author of included C code from
'GeographicLib' for geodesic distance)
Maintainer: Michael Dorman <dorman@post.bgu.ac.il>
Diff between nngeo versions 0.3.7 dated 2020-04-04 and 0.3.8 dated 2020-06-10
nngeo-0.3.7/nngeo/tests/testthat |only nngeo-0.3.7/nngeo/tests/testthat.R |only nngeo-0.3.8/nngeo/DESCRIPTION | 8 ++++---- nngeo-0.3.8/nngeo/MD5 | 26 +++++++++++++------------- nngeo-0.3.8/nngeo/NEWS.md | 12 +++++++++--- nngeo-0.3.8/nngeo/R/st_ellipse.R | 2 +- nngeo-0.3.8/nngeo/R/st_nn.R | 6 +++--- nngeo-0.3.8/nngeo/R/st_remove_holes.R | 2 +- nngeo-0.3.8/nngeo/build/vignette.rds |binary nngeo-0.3.8/nngeo/inst/doc/intro.pdf |binary nngeo-0.3.8/nngeo/inst/tinytest |only nngeo-0.3.8/nngeo/man/st_ellipse.Rd | 2 +- nngeo-0.3.8/nngeo/man/st_nn.Rd | 6 +++--- nngeo-0.3.8/nngeo/man/st_remove_holes.Rd | 2 +- nngeo-0.3.8/nngeo/tests/tinytest.R |only 15 files changed, 36 insertions(+), 30 deletions(-)
Title: Fast Fixed-Effects Estimations
Description: Fast and user-friendly estimation of econometric models with multiple fixed-effects. Includes ordinary least squares (OLS), generalized linear models (GLM) and the negative binomial.
The core of the package is based on optimized parallel C++ code, scaling especially well for large data sets. The method to obtain the fixed-effects coefficients is based on Berge (2018) <https://wwwen.uni.lu/content/download/110162/1299525/file/2018_13>.
Further provides tools to export and view the results of several estimations with intuitive design to cluster the standard-errors.
Author: Laurent Berge [aut, cre]
Maintainer: Laurent Berge <laurent.berge@uni.lu>
Diff between fixest versions 0.4.1 dated 2020-04-14 and 0.5.0 dated 2020-06-10
fixest-0.4.1/fixest/R/control.R |only fixest-0.4.1/fixest/vignettes/benchmark_difficult.png |only fixest-0.4.1/fixest/vignettes/benchmark_gaussian.png |only fixest-0.4.1/fixest/vignettes/benchmark_logit.png |only fixest-0.4.1/fixest/vignettes/benchmark_negbin.png |only fixest-0.4.1/fixest/vignettes/benchmark_poisson.png |only fixest-0.4.1/fixest/vignettes/equation.PNG |only fixest-0.5.0/fixest/DESCRIPTION | 12 fixest-0.5.0/fixest/MD5 | 120 - fixest-0.5.0/fixest/NAMESPACE | 23 fixest-0.5.0/fixest/NEWS.md |only fixest-0.5.0/fixest/R/Deprecated_funs.R | 6 fixest-0.5.0/fixest/R/ESTIMATION_FUNS.R | 302 +++ fixest-0.5.0/fixest/R/Lagging.R | 106 - fixest-0.5.0/fixest/R/Methods.R |only fixest-0.5.0/fixest/R/MiscFuns.R | 1294 ++++++++++++----- fixest-0.5.0/fixest/R/RcppExports.R | 28 fixest-0.5.0/fixest/R/coefplot.R | 51 fixest-0.5.0/fixest/R/fixest_env.R | 139 - fixest-0.5.0/fixest/R/xaxis.R | 4 fixest-0.5.0/fixest/README.md | 15 fixest-0.5.0/fixest/build/vignette.rds |binary fixest-0.5.0/fixest/inst/NEWS.Rd | 88 + fixest-0.5.0/fixest/inst/doc/fixest_walkthrough.R | 86 - fixest-0.5.0/fixest/inst/doc/fixest_walkthrough.Rmd | 24 fixest-0.5.0/fixest/inst/doc/fixest_walkthrough.html | 309 +--- fixest-0.5.0/fixest/man/base_did.Rd | 6 fixest-0.5.0/fixest/man/coef.fixest.Rd | 7 fixest-0.5.0/fixest/man/coefplot.Rd | 79 - fixest-0.5.0/fixest/man/coeftable.Rd | 7 fixest-0.5.0/fixest/man/confint.fixest.Rd | 5 fixest-0.5.0/fixest/man/demean.Rd |only fixest-0.5.0/fixest/man/deviance.fixest.Rd |only fixest-0.5.0/fixest/man/did_estimate_yearly_effects.Rd | 11 fixest-0.5.0/fixest/man/did_means.Rd | 22 fixest-0.5.0/fixest/man/did_plot_yearly_effects.Rd | 20 fixest-0.5.0/fixest/man/dof.Rd | 57 fixest-0.5.0/fixest/man/errbar.Rd | 26 fixest-0.5.0/fixest/man/etable.Rd | 113 + fixest-0.5.0/fixest/man/feNmlm.Rd | 44 fixest-0.5.0/fixest/man/feglm.Rd | 95 - fixest-0.5.0/fixest/man/femlm.Rd | 55 fixest-0.5.0/fixest/man/feols.Rd | 27 fixest-0.5.0/fixest/man/fitted.fixest.Rd | 7 fixest-0.5.0/fixest/man/i.Rd | 11 fixest-0.5.0/fixest/man/lag.formula.Rd | 11 fixest-0.5.0/fixest/man/panel.Rd | 10 fixest-0.5.0/fixest/man/predict.fixest.Rd | 3 fixest-0.5.0/fixest/man/r2.Rd | 27 fixest-0.5.0/fixest/man/resid.fixest.Rd | 11 fixest-0.5.0/fixest/man/setFixest_coefplot.Rd | 62 fixest-0.5.0/fixest/man/setFixest_dict.Rd | 7 fixest-0.5.0/fixest/man/setFixest_dof.Rd | 9 fixest-0.5.0/fixest/man/setFixest_fml.Rd |only fixest-0.5.0/fixest/man/setFixest_na_inf.rm.Rd | 7 fixest-0.5.0/fixest/man/setFixest_notes.Rd | 7 fixest-0.5.0/fixest/man/setFixest_nthreads.Rd | 7 fixest-0.5.0/fixest/man/setFixest_print.type.Rd | 7 fixest-0.5.0/fixest/man/sigma.fixest.Rd |only fixest-0.5.0/fixest/man/summary.fixest.Rd | 24 fixest-0.5.0/fixest/man/to_integer.Rd |only fixest-0.5.0/fixest/man/trade.Rd | 6 fixest-0.5.0/fixest/man/vcov.fixest.Rd | 13 fixest-0.5.0/fixest/man/weights.fixest.Rd |only fixest-0.5.0/fixest/src/RcppExports.cpp | 96 + fixest-0.5.0/fixest/src/demeaning.cpp | 13 fixest-0.5.0/fixest/src/lm_related.cpp |only fixest-0.5.0/fixest/src/parallel_funs.cpp | 170 +- fixest-0.5.0/fixest/vignettes/fixest_walkthrough.Rmd | 24 69 files changed, 2576 insertions(+), 1137 deletions(-)
Title: Concordance Correlation Coefficient for Repeated (and
Non-Repeated) Measures
Description: Estimates the Concordance Correlation Coefficient to assess agreement. The scenarios considered are non-repeated measures, non-longitudinal repeated measures (replicates) and longitudinal repeated measures. The estimation approaches implemented are variance components and U-statistics approaches.
Author: Josep Lluis Carrasco <jlcarrasco@ub.edu>, Josep Puig Martinez
<j.puig04@gmail.com>
Maintainer: Josep Lluis Carrasco <jlcarrasco@ub.edu>
Diff between cccrm versions 1.2.1 dated 2015-07-07 and 2.0.1 dated 2020-06-10
DESCRIPTION | 13 +++- MD5 | 25 ++++----- NAMESPACE | 10 ++- R/cccUst.R | 33 ++++++++---- R/ccclon.R | 152 ++++++++++++++++++++++++++++++++------------------------- R/ccclonw.R | 99 +++++++++++++++++++++---------------- R/cccvc.R | 5 + R/cccvc1.R | 101 ++++++++++++------------------------- R/cccvc2.R | 107 +++++++++++++++++----------------------- R/extra_func.R |only R/ic.ccc.R | 3 - man/ccclon.Rd | 7 ++ man/ccclonw.Rd | 7 +- man/cccvc.Rd | 5 + 14 files changed, 292 insertions(+), 275 deletions(-)
Title: Quick and Dirty Estimates for Wildlife Populations
Description: Provides simple, fast functions for maximum likelihood and Bayesian estimates of wildlife population parameters, suitable for use with simulated data or bootstraps. Early versions were indeed quick and dirty, but optional error-checking routines and meaningful error messages have been added. Includes single and multi-season occupancy, closed capture population estimation, survival, species richness and distance measures.
Author: Mike Meredith [aut, cre],
Jason Bryer [ctb] (showShinyApp),
John Kruschke [ctb],
Brian Neelon [ctb] (Bnormal),
Michael Schaub [ctb] (ch2mArray),
R Core Team [ctb] (stats::AIC code adapted for AICc)
Maintainer: Mike Meredith <mike@mmeredith.net>
Diff between wiqid versions 0.2.3 dated 2020-01-08 and 0.3.0 dated 2020-06-10
wiqid-0.2.3/wiqid/R/densityFolded.R |only wiqid-0.2.3/wiqid/R/onAttach.R |only wiqid-0.2.3/wiqid/R/plot_Bwiqid_diag_plots.R |only wiqid-0.2.3/wiqid/R/plot_crosscorrPlot.R |only wiqid-0.2.3/wiqid/R/plot_diagPlot.R |only wiqid-0.2.3/wiqid/R/postPriorOverlap.R |only wiqid-0.2.3/wiqid/data/railSims.RData |only wiqid-0.2.3/wiqid/inst/tests/testthat/test-0JAGS.R |only wiqid-0.2.3/wiqid/man/densityFolded.Rd |only wiqid-0.2.3/wiqid/man/plotDiagnostics.Rd |only wiqid-0.2.3/wiqid/man/plotPost.Rd |only wiqid-0.2.3/wiqid/man/plot_crosscorrPlot.Rd |only wiqid-0.2.3/wiqid/man/postPriorOverlap.Rd |only wiqid-0.2.3/wiqid/man/window_Bwiqid.Rd |only wiqid-0.3.0/wiqid/DESCRIPTION | 30 + wiqid-0.3.0/wiqid/MD5 | 145 ++++---- wiqid-0.3.0/wiqid/NAMESPACE | 36 +- wiqid-0.3.0/wiqid/NEWS | 99 +++-- wiqid-0.3.0/wiqid/R/Bbinomial.R | 6 wiqid-0.3.0/wiqid/R/Bnormal.R | 13 wiqid-0.3.0/wiqid/R/Bnormal_2.R | 10 wiqid-0.3.0/wiqid/R/BoccSS.R | 19 - wiqid-0.3.0/wiqid/R/BoccSS0.R | 11 wiqid-0.3.0/wiqid/R/Bpoisson.R | 6 wiqid-0.3.0/wiqid/R/Bsecr.R | 27 + wiqid-0.3.0/wiqid/R/BsurvCJS.R | 15 wiqid-0.3.0/wiqid/R/Bwiqid_methods.R | 137 +++----- wiqid-0.3.0/wiqid/R/as_Bwiqid.R | 184 ----------- wiqid-0.3.0/wiqid/R/ch2mArray.R | 2 wiqid-0.3.0/wiqid/R/closedCapMtcov.R | 6 wiqid-0.3.0/wiqid/R/getMCerror.R | 44 -- wiqid-0.3.0/wiqid/R/occ2sps.R | 2 wiqid-0.3.0/wiqid/R/occMS.R | 8 wiqid-0.3.0/wiqid/R/occMScovSite.R | 8 wiqid-0.3.0/wiqid/R/occMStime.R | 6 wiqid-0.3.0/wiqid/R/occSS.R | 6 wiqid-0.3.0/wiqid/R/occSScovSite.R | 6 wiqid-0.3.0/wiqid/R/occSSrnSite.R | 6 wiqid-0.3.0/wiqid/R/occSStime.R | 6 wiqid-0.3.0/wiqid/R/plotACs.R |only wiqid-0.3.0/wiqid/R/plotPost.R | 151 --------- wiqid-0.3.0/wiqid/R/predict.R | 14 wiqid-0.3.0/wiqid/R/simpleRhat.R | 55 --- wiqid-0.3.0/wiqid/R/survCJS.R | 12 wiqid-0.3.0/wiqid/R/survCJSaj.R | 16 wiqid-0.3.0/wiqid/R/utils.R | 40 -- wiqid-0.3.0/wiqid/R/utils_matchStart.R | 15 wiqid-0.3.0/wiqid/data/railSims.rda |only wiqid-0.3.0/wiqid/inst/WORDLIST |only wiqid-0.3.0/wiqid/inst/tests/testthat/test-Bnormal.R | 37 -- wiqid-0.3.0/wiqid/inst/tests/testthat/test-BoccSS.R | 43 -- wiqid-0.3.0/wiqid/inst/tests/testthat/test-occ2sps.R | 6 wiqid-0.3.0/wiqid/inst/tests/testthat/test-occMS.R | 8 wiqid-0.3.0/wiqid/inst/tests/testthat/test-occSS.R | 8 wiqid-0.3.0/wiqid/inst/tests/testthat/test-occSScovSite.R | 12 wiqid-0.3.0/wiqid/inst/tests/testthat/test-predict_occ2sps.R | 2 wiqid-0.3.0/wiqid/inst/tests/testthat/test-predict_occMS.R | 8 wiqid-0.3.0/wiqid/inst/tests/testthat/test-survCJS.R | 18 - wiqid-0.3.0/wiqid/man/Bbinomial.Rd | 4 wiqid-0.3.0/wiqid/man/Bnormal.Rd | 11 wiqid-0.3.0/wiqid/man/BoccSS.Rd | 6 wiqid-0.3.0/wiqid/man/Bpoisson.Rd | 4 wiqid-0.3.0/wiqid/man/Bsecr.Rd | 23 - wiqid-0.3.0/wiqid/man/as_Bwiqid.Rd | 57 --- wiqid-0.3.0/wiqid/man/data_GrandSkinks.Rd | 2 wiqid-0.3.0/wiqid/man/data_MeadowVoles.Rd | 2 wiqid-0.3.0/wiqid/man/data_dippers.Rd | 22 - wiqid-0.3.0/wiqid/man/data_railSims.Rd | 2 wiqid-0.3.0/wiqid/man/data_salamanders.Rd | 2 wiqid-0.3.0/wiqid/man/data_weta.Rd | 2 wiqid-0.3.0/wiqid/man/deprecated.Rd |only wiqid-0.3.0/wiqid/man/getMCerror.Rd | 10 wiqid-0.3.0/wiqid/man/occ2sps.Rd | 2 wiqid-0.3.0/wiqid/man/occMS.Rd | 2 wiqid-0.3.0/wiqid/man/occSS.Rd | 8 wiqid-0.3.0/wiqid/man/occSSrn.Rd | 2 wiqid-0.3.0/wiqid/man/plotACs.Rd |only wiqid-0.3.0/wiqid/man/plot_Bwiqid.Rd | 4 wiqid-0.3.0/wiqid/man/print_Bwiqid.Rd | 2 wiqid-0.3.0/wiqid/man/showShinyApp.Rd | 5 wiqid-0.3.0/wiqid/man/simpleRhat.Rd | 14 wiqid-0.3.0/wiqid/man/standardize.Rd | 2 wiqid-0.3.0/wiqid/man/wiqid-package.Rd | 9 83 files changed, 480 insertions(+), 1000 deletions(-)
Title: A Penalty Approach to Differential Item Functioning in Rasch
Models
Description: Performs DIFlasso as proposed by Tutz and Schauberger (2015) <doi:10.1007/s11336-013-9377-6>, a method to detect DIF (Differential Item Functioning) in Rasch Models. It can handle settings with many variables and also metric variables.
Author: Gunther Schauberger
Maintainer: Gunther Schauberger <gunther.schauberger@tum.de>
Diff between DIFlasso versions 1.0-3 dated 2017-05-09 and 1.0-4 dated 2020-06-10
DESCRIPTION | 12 ++++++------ MD5 | 18 +++++++++--------- NAMESPACE | 3 --- man/DIFlasso-package.Rd | 4 ++-- man/DIFlasso.Rd | 4 ++-- man/plot.DIFlasso.Rd | 4 ++-- man/plot.DIFlasso.refit.Rd | 4 ++-- man/print.DIFlasso.Rd | 4 ++-- man/print.DIFlasso.refit.Rd | 4 ++-- man/refitDIFlasso.Rd | 4 ++-- 10 files changed, 29 insertions(+), 32 deletions(-)
Title: Stochastic Profiling using Maximum Likelihood Estimation
Description: New Version of the R package originally accompanying the paper
"Parameterizing cell-to-cell regulatory heterogeneities via stochastic transcriptional profiles"
by Sameer S Bajikar, Christiane Fuchs, Andreas Roller, Fabian J Theis and Kevin A Janes
(PNAS 2014, 111(5), E626-635 <doi:10.1073/pnas.1311647111>). In this paper, we measure expression profiles
from small heterogeneous populations of cells, where each cell is assumed to be from a mixture of
lognormal distributions. We perform maximum likelihood estimation in order to infer the mixture ratio and
the parameters of these lognormal distributions from the cumulated expression measurements.
The main difference of this new package version to the previous one is that it is now possible to use
different n's, i.e. a dataset where each tissue sample originates from a different number of cells.
We used this on pheno-seq data, see: Tirier, S.M., Park, J., Preusser, F. et al. Pheno-seq - linking visual
features and gene expression in 3D cell culture systems. Sci Rep 9, 12367 (2019)
<doi:10.1038/s41598-019-48771-4>).
Author: Lisa Amrhein [aut, cre],
Christiane Fuchs [aut],
Christoph Kurz [ctb] (Author to function comb.summands.R')
Maintainer: Lisa Amrhein <amrheinlisa@gmail.com>
Diff between stochprofML versions 2.0.2 dated 2020-05-14 and 2.0.3 dated 2020-06-10
DESCRIPTION | 8 ++-- MD5 | 19 +++++----- NAMESPACE | 2 - NEWS.md | 6 ++- R/stochprof.results.EXPLN.R | 76 +++++++++++++++++++++-------------------- R/stochprof.results.LNLN.R | 73 ++++++++++++++++++++------------------- R/stochprof.results.rLNLN.R | 75 +++++++++++++++++++++------------------- man/d.sum.of.mixtures.EXPLN.Rd | 3 - man/d.sum.of.mixtures.LNLN.Rd | 2 - man/d.sum.of.mixtures.rLNLN.Rd | 2 - man/set.model.functions.Rd |only 11 files changed, 139 insertions(+), 127 deletions(-)
Title: Shape Constrained Additive Models
Description: Routines for generalized additive modelling under shape
constraints on the component functions of the linear predictor
(Pya and Wood, 2015) <doi:10.1007/s11222-013-9448-7>.
Models can contain multiple shape constrained (univariate
and/or bivariate) and unconstrained terms. The routines of gam()
in package 'mgcv' are used for setting up the model matrix,
printing and plotting the results. Penalized likelihood
maximization based on Newton-Raphson method is used to fit a
model with multiple smoothing parameter selection by GCV or
UBRE/AIC.
Author: Natalya Pya <nat.pya@gmail.com>
Maintainer: Natalya Pya <nat.pya@gmail.com>
Diff between scam versions 1.2-5 dated 2019-08-19 and 1.2-6 dated 2020-06-10
scam-1.2-5/scam/R/bfgs.R |only scam-1.2-6/scam/ChangeLog | 28 scam-1.2-6/scam/DESCRIPTION | 10 scam-1.2-6/scam/MD5 | 72 - scam-1.2-6/scam/NAMESPACE | 2 scam-1.2-6/scam/R/bfgs.r |only scam-1.2-6/scam/R/bivar.smooth.const.R | 226 +-- scam-1.2-6/scam/R/check.analytical.R | 3 scam-1.2-6/scam/R/derivative.scam.r | 2 scam-1.2-6/scam/R/estimate.scam.R | 97 - scam-1.2-6/scam/R/plot.r | 75 - scam-1.2-6/scam/R/predict.scam.R | 326 +++- scam-1.2-6/scam/R/print.scam.R | 3 scam-1.2-6/scam/R/scam.check.R | 6 scam-1.2-6/scam/R/scam.r | 850 +++++++++---- scam-1.2-6/scam/R/summary.scam.R | 9 scam-1.2-6/scam/R/uni.smooth.const-with-po.r | 234 +-- scam-1.2-6/scam/build/partial.rdb |binary scam-1.2-6/scam/man/bfgs_gcv.ubre.Rd | 6 scam-1.2-6/scam/man/gcv.ubre_grad.Rd | 20 scam-1.2-6/scam/man/linear.functional.terms.Rd | 4 scam-1.2-6/scam/man/marginal.matrices.tesmi2.ps.Rd | 7 scam-1.2-6/scam/man/plot.scam.Rd | 5 scam-1.2-6/scam/man/predict.scam.Rd | 11 scam-1.2-6/scam/man/scam.Rd | 43 scam-1.2-6/scam/man/scam.check.Rd | 3 scam-1.2-6/scam/man/scam.control.Rd | 28 scam-1.2-6/scam/man/scam.fit.Rd | 30 scam-1.2-6/scam/man/smooth.construct.mpd.smooth.spec.Rd | 1 scam-1.2-6/scam/man/smooth.construct.mpi.smooth.spec.Rd | 1 scam-1.2-6/scam/man/smooth.construct.po.smooth.spec.Rd | 7 scam-1.2-6/scam/man/smooth.construct.tedecv.smooth.spec.Rd | 1 scam-1.2-6/scam/man/smooth.construct.tedmd.smooth.spec.Rd | 1 scam-1.2-6/scam/man/smooth.construct.temicv.smooth.spec.Rd | 2 scam-1.2-6/scam/man/smooth.construct.temicx.smooth.spec.Rd | 1 scam-1.2-6/scam/man/vis.scam.Rd | 38 scam-1.2-6/scam/src |only 37 files changed, 1360 insertions(+), 792 deletions(-)
Title: Probabilistic Sex Estimate using Logistic Regression, Based on
VISual Traits of the Human Os Coxae
Description: An R-Shiny application implementing a method of sexing the human os coxae based on logistic regressions and Bruzek's nonmetric traits <doi:10.1002/ajpa.23855>.
Author: Frédéric Santos [aut, cre] (<https://orcid.org/0000-0003-1445-3871>),
Élodie Bernardeau [ctb]
Maintainer: Frédéric Santos <frederic.santos@u-bordeaux.fr>
Diff between PELVIS versions 2.0.0 dated 2019-07-22 and 2.0.1 dated 2020-06-10
DESCRIPTION | 18 +++++++++--------- MD5 | 14 +++++++------- NEWS.md | 6 ++++++ R/server.R | 5 +++-- R/ui.R | 4 ++-- README.md | 30 +++++++++++++++++------------- inst/CITATION | 2 +- man/PELVIS-package.Rd | 4 ++-- 8 files changed, 47 insertions(+), 36 deletions(-)
Title: Quick Serialization of R Objects
Description: Provides functions for quickly writing and reading any R object to and from disk.
Author: Travers Ching [aut, cre, cph],
Yann Collet [ctb, cph] (Yann Collet is the author of the bundled zstd
and lz4 code),
Facebook, Inc. [cph] (Facebook is the copyright holder of the bundled
zstd code),
Reichardt Tino [ctb, cph] (Contributor/copyright holder of zstd bundled
code),
Skibinski Przemyslaw [ctb, cph] (Contributor/copyright holder of zstd
bundled code),
Mori Yuta [ctb, cph] (Contributor/copyright holder of zstd bundled
code),
Romain Francois [ctb, cph] (Derived example/tutorials for Alt-Rep
structures),
Francesc Alted [ctb, cph] (Shuffling routines derived from Blosc
library)
Maintainer: Travers Ching <traversc@gmail.com>
Diff between qs versions 0.21.2 dated 2020-03-10 and 0.22.1 dated 2020-06-10
ChangeLog | 5 + DESCRIPTION | 15 +-- MD5 | 40 ++++---- NAMESPACE | 6 + R/qsavem-load.R |only R/zzz.R | 2 README.md | 66 +++++-------- build/vignette.rds |binary configure | 18 +-- configure.ac | 2 data/starnames.rda |binary inst/doc/vignette.R | 30 +----- inst/doc/vignette.html | 79 +++++++--------- inst/doc/vignette.rmd | 66 +++++-------- man/qreadm.Rd |only man/qsavem.Rd |only man/starnames.Rd | 4 src/RcppExports.cpp | 2 src/qs_common.h | 213 -------------------------------------------- src/qs_deserialize_common.h | 40 ++------ src/qs_serialize_common.h | 40 ++++++-- vignettes/altrep_bench.png |only vignettes/vignette.rmd | 66 +++++-------- 23 files changed, 228 insertions(+), 466 deletions(-)
Title: A Toolkit for Recursive Partytioning
Description: A toolkit with infrastructure for representing, summarizing, and
visualizing tree-structured regression and classification models. This
unified infrastructure can be used for reading/coercing tree models from
different sources ('rpart', 'RWeka', 'PMML') yielding objects that share
functionality for print()/plot()/predict() methods. Furthermore, new and improved
reimplementations of conditional inference trees (ctree()) and model-based
recursive partitioning (mob()) from the 'party' package are provided based
on the new infrastructure. A description of this package was published
by Hothorn and Zeileis (2015) <http://jmlr.org/papers/v16/hothorn15a.html>.
Author: Torsten Hothorn [aut, cre] (<https://orcid.org/0000-0001-8301-0471>),
Heidi Seibold [ctb] (<https://orcid.org/0000-0002-8960-9642>),
Achim Zeileis [aut] (<https://orcid.org/0000-0003-0918-3766>)
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between partykit versions 1.2-7 dated 2020-03-06 and 1.2-8 dated 2020-06-10
DESCRIPTION | 8 ++++---- MD5 | 20 ++++++++++---------- R/party.R | 4 +++- R/utils.R | 2 +- inst/NEWS.Rd | 10 ++++++++++ inst/doc/constparty.pdf |binary inst/doc/ctree.pdf |binary inst/doc/mob.pdf |binary inst/doc/partykit.pdf |binary tests/bugfixes.R | 4 ++++ tests/bugfixes.Rout.save | 8 ++++++-- 11 files changed, 38 insertions(+), 18 deletions(-)
Title: Monitoring Convergence of EU Countries
Description: Indicators and measures by country and time describe
what happens at economic and social levels. This package provides
functions to calculate several measures of convergence after imputing
missing values. The automated downloading of Eurostat data,
followed by the production of country fiches and indicator fiches,
makes possible to produce automated reports.
Author: Federico M. Stefanini [arc, aut, cre],
Massimiliano Mascherini [arc],
Eleonora Peruffo [ctb],
Nedka Nikiforova [ctb],
Chiara Litardi [ctb]
Maintainer: Federico M. Stefanini <federico.stefanini@unifi.it>
Diff between convergEU versions 0.4.2 dated 2020-04-15 and 0.4.6 dated 2020-06-10
convergEU-0.4.2/convergEU/tests/testthat/test_template.R |only convergEU-0.4.6/convergEU/DESCRIPTION | 15 convergEU-0.4.6/convergEU/MD5 | 120 convergEU-0.4.6/convergEU/NEWS.md | 35 convergEU-0.4.6/convergEU/R/average_clust.R | 8 convergEU-0.4.6/convergEU/R/convergEU_glb.R | 20 convergEU-0.4.6/convergEU/R/dev_mean_plot.R | 2 convergEU-0.4.6/convergEU/R/dow_soc_scor_boa.R | 10 convergEU-0.4.6/convergEU/R/download_indicator_EUS.R | 51 convergEU-0.4.6/convergEU/R/go_indica_fi.R | 75 convergEU-0.4.6/convergEU/R/go_ms_fi.R | 78 convergEU-0.4.6/convergEU/R/ms_pattern_ori.R | 27 convergEU-0.4.6/convergEU/README.md |only convergEU-0.4.6/convergEU/build/vignette.rds |binary convergEU-0.4.6/convergEU/inst/EUstat_download/Eurostat_data-2019-04-24.Rmd | 20 convergEU-0.4.6/convergEU/inst/EUstat_download/Eurostat_data.Rmd | 20 convergEU-0.4.6/convergEU/inst/doc/PATTERNS-CONV.R | 28 convergEU-0.4.6/convergEU/inst/doc/PATTERNS-CONV.Rmd | 43 convergEU-0.4.6/convergEU/inst/doc/PATTERNS-CONV.html | 29 convergEU-0.4.6/convergEU/inst/doc/measuring-convergence.R | 61 convergEU-0.4.6/convergEU/inst/doc/measuring-convergence.Rmd | 70 convergEU-0.4.6/convergEU/inst/doc/measuring-convergence.html | 3209 +++++----- convergEU-0.4.6/convergEU/inst/extdata/EUF.css | 16 convergEU-0.4.6/convergEU/inst/extdata/country_fi_2.Rmd | 7 convergEU-0.4.6/convergEU/inst/extdata/indica_fi_2.Rmd | 40 convergEU-0.4.6/convergEU/inst/extdata/myLICENSE | 1184 +-- convergEU-0.4.6/convergEU/man/dev_mean_plot.Rd | 2 convergEU-0.4.6/convergEU/man/dow_soc_scor_boa.Rd | 13 convergEU-0.4.6/convergEU/man/download_indicator_EUS.Rd | 54 convergEU-0.4.6/convergEU/man/go_indica_fi.Rd | 67 convergEU-0.4.6/convergEU/man/go_ms_fi.Rd | 79 convergEU-0.4.6/convergEU/man/ms_pattern_ori.Rd | 30 convergEU-0.4.6/convergEU/tests/testthat.R | 11 convergEU-0.4.6/convergEU/tests/testthat/test_abso_change.R | 6 convergEU-0.4.6/convergEU/tests/testthat/test_average_clust.R | 11 convergEU-0.4.6/convergEU/tests/testthat/test_check.R | 5 convergEU-0.4.6/convergEU/tests/testthat/test_check_country.R | 4 convergEU-0.4.6/convergEU/tests/testthat/test_convergence.R | 5 convergEU-0.4.6/convergEU/tests/testthat/test_country_ranking.R | 3 convergEU-0.4.6/convergEU/tests/testthat/test_demea_change.R | 3 convergEU-0.4.6/convergEU/tests/testthat/test_departure_best.R | 4 convergEU-0.4.6/convergEU/tests/testthat/test_departure_mean.R | 3 convergEU-0.4.6/convergEU/tests/testthat/test_dev_mean_plot.R | 3 convergEU-0.4.6/convergEU/tests/testthat/test_download_indicator_EUS.R | 3 convergEU-0.4.6/convergEU/tests/testthat/test_extract_indicator_EUF.R | 3 convergEU-0.4.6/convergEU/tests/testthat/test_gamma_conv_msteps.R | 4 convergEU-0.4.6/convergEU/tests/testthat/test_go_indica_fi.R | 37 convergEU-0.4.6/convergEU/tests/testthat/test_go_ms_fi.R | 38 convergEU-0.4.6/convergEU/tests/testthat/test_gra_de2_patt.R | 3 convergEU-0.4.6/convergEU/tests/testthat/test_graph_departure.R | 3 convergEU-0.4.6/convergEU/tests/testthat/test_impu_det_lin.R | 4 convergEU-0.4.6/convergEU/tests/testthat/test_impute_dataset.R | 14 convergEU-0.4.6/convergEU/tests/testthat/test_ma_dataset.R | 3 convergEU-0.4.6/convergEU/tests/testthat/test_ms_pattern_ori.R | 3 convergEU-0.4.6/convergEU/tests/testthat/test_points2par.R | 5 convergEU-0.4.6/convergEU/tests/testthat/test_pop_var.R | 5 convergEU-0.4.6/convergEU/tests/testthat/test_scoreb_yrs.R | 3 convergEU-0.4.6/convergEU/tests/testthat/test_smoo_dataset.R | 7 convergEU-0.4.6/convergEU/tests/testthat/test_ts_parlin.R | 4 convergEU-0.4.6/convergEU/tests/testthat/test_upDo_CoDi.R | 3 convergEU-0.4.6/convergEU/vignettes/PATTERNS-CONV.Rmd | 43 convergEU-0.4.6/convergEU/vignettes/measuring-convergence.Rmd | 70 62 files changed, 2686 insertions(+), 3040 deletions(-)
Title: Radiation Safety
Description: Provides functions for radiation safety, also known as "radiation protection" and "radiological control". The science of radiation protection is called "health physics" and its engineering functions are called "radiological engineering". Functions in this package cover many of the computations needed by radiation safety professionals. Examples include: obtaining updated calibration and source check values for radiation monitors to account for radioactive decay in a reference source, simulating instrument readings to better understand measurement uncertainty, correcting instrument readings for geometry and ambient atmospheric conditions. Many of these functions are described in Johnson and Kirby (2011, ISBN-13: 978-1609134198). Utilities are also included for developing inputs and processing outputs with radiation transport codes, such as MCNP, a general-purpose Monte Carlo N-Particle code that can be used for neutron, photon, electron, or coupled neutron/photon/electron transport (Werner et. al. (2018) <doi:10.2172/1419730>).
Author: Mark Hogue <mark.hogue.chp@gmail.com>
Maintainer: Mark Hogue <mark.hogue.chp@gmail.com>
Diff between radsafer versions 2.2.0 dated 2020-02-28 and 2.2.1 dated 2020-06-10
radsafer-2.2.0/radsafer/R/search_alpha_by_E.R |only radsafer-2.2.0/radsafer/R/search_beta_by_E.R |only radsafer-2.2.0/radsafer/R/search_phot_by_E.R |only radsafer-2.2.0/radsafer/man/bin_screen_phot.Rd |only radsafer-2.2.0/radsafer/man/search_alpha_by_E.Rd |only radsafer-2.2.0/radsafer/man/search_beta_by_E.Rd |only radsafer-2.2.0/radsafer/man/search_phot_by_E.Rd |only radsafer-2.2.1/radsafer/DESCRIPTION | 12 - radsafer-2.2.1/radsafer/MD5 | 78 ++++------ radsafer-2.2.1/radsafer/NAMESPACE | 5 radsafer-2.2.1/radsafer/R/RN_bin_screen_phot.R | 4 radsafer-2.2.1/radsafer/R/RN_search_alpha_by_E.R | 2 radsafer-2.2.1/radsafer/build/vignette.rds |binary radsafer-2.2.1/radsafer/inst/doc/Introduction_to_radsafer.html | 29 +-- radsafer-2.2.1/radsafer/man/RN_Spec_Act.Rd | 22 +- radsafer-2.2.1/radsafer/man/RN_bin_screen_phot.Rd |only radsafer-2.2.1/radsafer/man/RN_index_screen.Rd | 33 ++-- radsafer-2.2.1/radsafer/man/RN_info.Rd | 22 +- radsafer-2.2.1/radsafer/man/RN_plot_search_results.Rd | 28 +-- radsafer-2.2.1/radsafer/man/RN_plot_spectrum.Rd | 30 ++- radsafer-2.2.1/radsafer/man/RN_save_spectrum.Rd | 24 +-- radsafer-2.2.1/radsafer/man/RN_search_alpha_by_E.Rd | 31 ++- radsafer-2.2.1/radsafer/man/RN_search_beta_by_E.Rd | 28 +-- radsafer-2.2.1/radsafer/man/RN_search_phot_by_E.Rd | 31 ++- radsafer-2.2.1/radsafer/man/air_dens_cf.Rd | 8 - radsafer-2.2.1/radsafer/man/disk_to_disk_solid_angle.Rd | 19 +- radsafer-2.2.1/radsafer/man/dk_correct.Rd | 18 +- radsafer-2.2.1/radsafer/man/dk_pct_to_num_half_life.Rd | 5 radsafer-2.2.1/radsafer/man/dk_time.Rd | 5 radsafer-2.2.1/radsafer/man/mcnp_cone_angle.Rd | 19 +- radsafer-2.2.1/radsafer/man/mcnp_est_nps.Rd | 19 +- radsafer-2.2.1/radsafer/man/mcnp_matrix_rotations.Rd | 19 +- radsafer-2.2.1/radsafer/man/mcnp_plot_out_spec.Rd | 22 +- radsafer-2.2.1/radsafer/man/mcnp_scan2plot.Rd | 19 +- radsafer-2.2.1/radsafer/man/mcnp_scan2spec.Rd | 19 +- radsafer-2.2.1/radsafer/man/mcnp_scan_save.Rd | 19 +- radsafer-2.2.1/radsafer/man/mcnp_si_sp_RD.Rd | 28 ++- radsafer-2.2.1/radsafer/man/mcnp_si_sp_hist.Rd | 19 +- radsafer-2.2.1/radsafer/man/mcnp_si_sp_hist_scan.Rd | 19 +- radsafer-2.2.1/radsafer/man/neutron_geom_cf.Rd | 8 - radsafer-2.2.1/radsafer/man/photons_cs137_hist.Rd | 6 radsafer-2.2.1/radsafer/man/rate_meter_sim.Rd | 9 - radsafer-2.2.1/radsafer/man/scaler_sim.Rd | 8 - radsafer-2.2.1/radsafer/man/tau_estimate.Rd | 8 - 44 files changed, 361 insertions(+), 314 deletions(-)