Title: Tidy Interface to 'data.table'
Description: Tidy interface to 'data.table'. 'rlang' compatible, which allows the user to build custom functions much like they would in the tidyverse.
Author: Mark Fairbanks [aut, cre],
Tyson Barrett [ctb],
Ivan Leung [ctb],
Ross Kennedy [ctb],
Lionel Henry [ctb],
Matt Carlson [ctb]
Maintainer: Mark Fairbanks <mark.t.fairbanks@gmail.com>
Diff between tidytable versions 0.5.1 dated 2020-05-29 and 0.5.2 dated 2020-06-26
DESCRIPTION | 8 - MD5 | 177 ++++++++++++++++----------------- NAMESPACE | 19 ++- NEWS.md | 14 ++ R/arrange.R | 10 + R/bind.R | 12 +- R/case.R | 6 - R/count.R | 9 + R/distinct.R | 8 + R/drop_na.R | 6 - R/fill.R | 68 ++++++++---- R/filter.R | 34 +++--- R/get_dummies.R | 17 ++- R/group_split.R | 8 + R/ifelse.R | 6 - R/join.R | 33 ++++-- R/map.R | 48 +++++++- R/map2.R | 48 +++++++- R/mutate.R | 47 ++++---- R/mutate_across.R | 25 ++-- R/mutate_variants.R | 29 +++-- R/n.R | 8 + R/nest.R | 15 ++ R/notin.R | 3 R/pivot_longer.R | 14 ++ R/pivot_wider.R | 16 ++ R/pull.R | 10 + R/relocate.R | 6 - R/rename.R | 6 - R/rename_with.R | 6 - R/replace_na.R | 6 - R/row_number.R | 6 - R/select.R | 6 - R/separate.R | 15 ++ R/separate_rows.R |only R/slice.R | 109 ++++++++++++++------ R/summarize.R | 40 +++++-- R/summarize_across.R | 26 ++-- R/tidytable_package.R | 23 ++-- R/top_n.R | 25 +++- R/transmute.R | 19 ++- R/unite.R | 20 ++- R/unnest.R | 41 ++++--- R/utils-general.R | 15 ++ R/utils-selectors.R | 53 +++++---- README.md | 49 ++++----- man/fill..Rd | 26 +++- man/filter..Rd | 10 + man/map..Rd | 4 man/mutate..Rd | 10 + man/mutate_across..Rd | 8 - man/mutate_if..Rd | 18 +-- man/n..Rd | 2 man/reexports.Rd | 6 - man/separate_rows..Rd |only man/slice..Rd | 34 +++--- man/summarize..Rd | 16 +- man/summarize_across..Rd | 16 +- man/top_n..Rd | 10 + man/transmute..Rd | 8 - man/unnest..Rd | 6 - tests/testthat/test-arrange.R | 11 +- tests/testthat/test-bind.R | 19 ++- tests/testthat/test-case_when.R | 27 ++--- tests/testthat/test-count.R | 2 tests/testthat/test-distinct.R | 5 tests/testthat/test-drop_na.R | 3 tests/testthat/test-fill.R | 6 - tests/testthat/test-filter.R | 51 ++++----- tests/testthat/test-get_dummies.R | 23 +++- tests/testthat/test-group_split.R | 10 + tests/testthat/test-ifelse.R | 4 tests/testthat/test-join.R | 6 - tests/testthat/test-mutate.R | 103 +++++++++++-------- tests/testthat/test-mutate_variants.R | 27 ++--- tests/testthat/test-pivot_longer.R | 3 tests/testthat/test-pivot_wider.R | 3 tests/testthat/test-pull.R | 4 tests/testthat/test-relocate.R | 4 tests/testthat/test-rename.R | 5 tests/testthat/test-replace_na.R | 3 tests/testthat/test-select.R | 5 tests/testthat/test-separate.R | 2 tests/testthat/test-separate_rows.R |only tests/testthat/test-slice.R | 68 ++++++++---- tests/testthat/test-summarize.R | 37 ++++-- tests/testthat/test-summarize_across.R | 8 - tests/testthat/test-top_n.R | 22 ++-- tests/testthat/test-transmute.R | 4 tests/testthat/test-unite.R | 13 ++ tests/testthat/test-unnest.R | 31 +++++ 91 files changed, 1218 insertions(+), 634 deletions(-)
Title: Approximate POMDP Planning Software
Description: A toolkit for Partially Observed Markov Decision Processes (POMDP). Provides
bindings to C++ libraries implementing the algorithm SARSOP (Successive Approximations
of the Reachable Space under Optimal Policies) and described in Kurniawati et al (2008),
<doi:10.15607/RSS.2008.IV.009>. This package also provides a high-level interface
for generating, solving and simulating POMDP problems and their solutions.
Author: Carl Boettiger [cre, aut, cph]
(<https://orcid.org/0000-0002-1642-628X>),
Jeroen Ooms [aut],
Milad Memarzadeh [aut],
Hanna Kurniawati [ctb, cph],
David Hsu [ctb, cph],
Hanna Kurniawati [ctb, cph],
Wee Sun Lee [ctb, cph],
Yanzhu Du [ctb],
Xan Huang [ctb],
Trey Smith [ctb, cph],
Tony Cassandra [ctb, cph],
Lee Thomason [ctb, cph],
Carl Kindman [ctb, cph],
Le Trong Dao [ctb, cph],
Amit Jain [ctb, cph],
Rong Nan [ctb, cph],
Ulrich Drepper [ctb],
Free Software Foundation [cph],
Tyge Lovset [ctb, cph],
Yves Berquin [ctb, cph],
Benjamin Grüdelbach [ctb],
RSA Data Security, Inc. [cph]
Maintainer: Carl Boettiger <cboettig@gmail.com>
Diff between sarsop versions 0.6.2 dated 2020-06-26 and 0.6.3 dated 2020-06-26
DESCRIPTION | 6 +++--- MD5 | 16 ++++++++-------- NAMESPACE | 1 + NEWS.md | 16 +++++++++++----- R/compute_policy.R | 1 + R/write_momdpx.R | 5 ++++- src/appl-0.96/MathLib/MathLib.h | 18 +++++++++--------- src/appl-0.96/MathLib/SparseVector.cpp | 10 +++++----- src/appl-0.96/Utils/CPMemUtils.cpp | 5 +++-- 9 files changed, 45 insertions(+), 33 deletions(-)
Title: Constructs Asymmetric Hidden Markov Models
Description: Asymmetric hidden Markov model (HMM-A) learning.
HMM-As are similar to regular HMMs, but use Bayesian Networks (BNs) in
their emission distribution. The HMM-As can therefore offer more problem
insight [Bueno et al. 2017, <doi:10.1016/j.ijar.2017.05.011>].
Author: Marcos L.P Bueno [aut],
Arjen Hommersom [aut, cre],
Joop Thibaudier [aut],
Marco Scutari [ctb],
Robert Ness [ctb],
Robert Gentleman and Ross Ihaka [cph],
The R Development Core Team [cph],
The R Foundation [cph]
Maintainer: Arjen Hommersom <arjen.hommersom@ou.nl>
Diff between hmma versions 1.0.0 dated 2020-04-08 and 1.1.0 dated 2020-06-26
DESCRIPTION | 14 +-- MD5 | 24 ++--- NEWS.md | 6 + R/visualise.R | 134 +++++++++++++++++++++++++++++--- build/vignette.rds |binary inst/doc/intro.R | 3 inst/doc/intro.Rmd | 14 ++- inst/doc/intro.html | 190 +++++++++++++++++++++------------------------- man/visualise.Rd | 61 +++++++++++++- src/Makevars | 3 src/include/register.h | 4 tests/testthat/testthat.R | 6 - vignettes/intro.Rmd | 14 ++- 13 files changed, 327 insertions(+), 146 deletions(-)
Title: Access Reactive Data Interactively
Description: Troubleshooting reactive data in 'shiny' can be difficult. These functions will convert reactive data frames into functions and load all assigned objects into your local environment. If you create a dummy input object, as the function will suggest, you will be able to test your server and ui functions interactively.
Author: Jake Riley [aut, cre]
Maintainer: Jake Riley <rjake@sas.upenn.edu>
Diff between shinyobjects versions 0.1.0 dated 2020-05-12 and 0.1.1 dated 2020-06-26
shinyobjects-0.1.0/shinyobjects/man/figures/,ogo.png |only shinyobjects-0.1.1/shinyobjects/DESCRIPTION | 6 shinyobjects-0.1.1/shinyobjects/MD5 | 28 shinyobjects-0.1.1/shinyobjects/NEWS.md | 7 shinyobjects-0.1.1/shinyobjects/R/helper_functions.R | 16 shinyobjects-0.1.1/shinyobjects/R/load_reactive_objects.R | 14 shinyobjects-0.1.1/shinyobjects/R/source_editor_context.R | 8 shinyobjects-0.1.1/shinyobjects/R/utils-pipe.R | 2 shinyobjects-0.1.1/shinyobjects/R/view_ui.R | 19 shinyobjects-0.1.1/shinyobjects/README.md | 22 shinyobjects-0.1.1/shinyobjects/man/figures/logo.png |binary shinyobjects-0.1.1/shinyobjects/man/figures/logo.svg | 5415 +++++++++- shinyobjects-0.1.1/shinyobjects/man/pipe.Rd | 2 shinyobjects-0.1.1/shinyobjects/man/view_ui.Rd | 2 shinyobjects-0.1.1/shinyobjects/tests/testthat/test-convert-selection.R |only shinyobjects-0.1.1/shinyobjects/tests/testthat/test-load-reactive-objects.R | 13 16 files changed, 5123 insertions(+), 431 deletions(-)
Title: Functions to Analyze Single System Data
Description: Functions to visually and statistically analyze single system data.
Author: Charles Auerbach [aut, cre],
Wendy Zeitlin [aut]
Maintainer: Charles Auerbach <auerbach@yu.edu>
Diff between SSDforR versions 1.5.16 dated 2020-06-09 and 1.5.17 dated 2020-06-26
DESCRIPTION | 10 +++++----- MD5 | 18 +++++++++--------- NAMESPACE | 2 +- R/ABma.R | 6 ++++-- R/Append.R | 2 +- R/Effectsize.R | 10 +++++----- R/NAPabove.R | 6 ++++-- R/NAPbelow.R | 5 +++-- R/Savecsv.R | 2 +- R/diffchart.R | 5 +++-- 10 files changed, 36 insertions(+), 30 deletions(-)
Title: Maximum Likelihood Shrinkage using Generalized Ridge or Least
Angle Regression Methods
Description: Functions are provided to calculate and display ridge TRACEs for various
shrinkage Paths. They determine the m-Extent of shrinkage most likely, under
Normal-theory, to produce optimally biased estimates of regression beta-coefficients
with minimum MSE Risk. The new unr.ridge() function implements the "Unrestricted
Path" introduced in "Ridge TRACE Diagnostics" <arXiv:2005.14291>. This Path appears
more efficient than the Paths used by the qm.ridge(), aug.lars() and uc.lars()
functions. In-Sample predictions can be made using RXpredict() for all five types of
RXshrink linear model TRACE diagnostics. New functions MLboot(), MLcalc(), MLhist()
and MLtrue() provide insights into the true bias and MSE risk characteristics of
non-linear Shrinkage estimators. The correct.signs() function provides estimates
with "correct" numerical signs when ill-conditioned (nearly multicollinear) models
yield OLS estimates that disagree with the signs of the observed correlations
between the y-outcome and the selected x-predictor variables.
Author: Bob Obenchain
Maintainer: Bob Obenchain <wizbob@att.net>
Diff between RXshrink versions 1.3.3 dated 2020-04-26 and 1.4 dated 2020-06-26
RXshrink-1.3.3/RXshrink/R/true.funs.R |only RXshrink-1.3.3/RXshrink/man/plot.true.risk.Rd |only RXshrink-1.3.3/RXshrink/man/plot.true.simu.Rd |only RXshrink-1.3.3/RXshrink/man/true.risk.Rd |only RXshrink-1.3.3/RXshrink/man/true.simu.Rd |only RXshrink-1.4/RXshrink/DESCRIPTION | 30 +++++--- RXshrink-1.4/RXshrink/MD5 | 55 ++++++++------- RXshrink-1.4/RXshrink/NAMESPACE | 22 +++--- RXshrink-1.4/RXshrink/R/MLboot.R |only RXshrink-1.4/RXshrink/R/MLcalc.R |only RXshrink-1.4/RXshrink/R/MLtrue.R |only RXshrink-1.4/RXshrink/R/aug.lars.R | 13 +-- RXshrink-1.4/RXshrink/R/qm.ridge.R | 13 +-- RXshrink-1.4/RXshrink/R/uc.lars.R | 18 ++--- RXshrink-1.4/RXshrink/R/unr.ridge.R | 93 +++++++++++++++++++++----- RXshrink-1.4/RXshrink/data/longley2.rda |binary RXshrink-1.4/RXshrink/data/mpg.rda |binary RXshrink-1.4/RXshrink/demo/00Index | 7 + RXshrink-1.4/RXshrink/demo/haldport.R | 73 +++++++++++++------- RXshrink-1.4/RXshrink/demo/longley2.R | 27 +++---- RXshrink-1.4/RXshrink/demo/mpg.R | 44 +++--------- RXshrink-1.4/RXshrink/demo/tycobb.R |only RXshrink-1.4/RXshrink/man/MLboot.Rd |only RXshrink-1.4/RXshrink/man/MLcalc.Rd |only RXshrink-1.4/RXshrink/man/MLhist.Rd |only RXshrink-1.4/RXshrink/man/MLtrue.Rd |only RXshrink-1.4/RXshrink/man/RXpredict.Rd | 8 +- RXshrink-1.4/RXshrink/man/RXshrink-package.Rd | 63 ++++++++++------- RXshrink-1.4/RXshrink/man/aug.lars.Rd | 20 +++-- RXshrink-1.4/RXshrink/man/correct.signs.Rd | 39 +++++----- RXshrink-1.4/RXshrink/man/internal.Rd | 19 +++-- RXshrink-1.4/RXshrink/man/qm.ridge.Rd | 45 ++++++------ RXshrink-1.4/RXshrink/man/tycobb.Rd | 37 +++++----- RXshrink-1.4/RXshrink/man/uc.lars.Rd | 14 +-- RXshrink-1.4/RXshrink/man/unr.ridge.Rd | 25 +++--- 35 files changed, 388 insertions(+), 277 deletions(-)
Title: Ratio-of-Uniforms Sampling for Bayesian Extreme Value Analysis
Description: Provides functions for the Bayesian analysis of extreme value
models. The 'rust' package <https://cran.r-project.org/package=rust> is
used to simulate a random sample from the required posterior distribution.
The functionality of 'revdbayes' is similar to the 'evdbayes' package
<https://cran.r-project.org/package=evdbayes>, which uses Markov Chain
Monte Carlo ('MCMC') methods for posterior simulation. Also provided
are functions for making inferences about the extremal index, using
the K-gaps model of Suveges and Davison (2010) <doi:10.1214/09-AOAS292>.
Also provided are d,p,q,r functions for the Generalised Extreme Value
('GEV') and Generalised Pareto ('GP') distributions that deal
appropriately with cases where the shape parameter is very close to zero.
Author: Paul J. Northrop [aut, cre, cph]
Maintainer: Paul J. Northrop <p.northrop@ucl.ac.uk>
Diff between revdbayes versions 1.3.6 dated 2019-12-02 and 1.3.7 dated 2020-06-26
DESCRIPTION | 10 MD5 | 72 +- NAMESPACE | 2 NEWS.md | 6 R/distributions.R | 7 R/informative_priors.R | 6 R/priors.R | 1 R/rposterior.R | 1 R/rposterior_rcpp.R | 1 R/rprior.R | 6 README.md | 52 +- build/vignette.rds |binary inst/doc/revdbayes-a-vignette.Rmd | 4 inst/doc/revdbayes-a-vignette.html | 669 +++++++++++++++++--------- inst/doc/revdbayes-b-using-rcpp-vignette.html | 537 ++++++++++++++------ inst/doc/revdbayes-c-predictive-vignette.html | 407 +++++++++++---- inst/doc/revdbayes-d-kgaps-vignette.html | 327 ++++++++++-- man/gev_quant.Rd | 6 man/gom.Rd | 4 man/newlyn.Rd | 4 man/oxford.Rd | 4 man/portpirie.Rd | 4 man/rainfall.Rd | 4 man/rpost.Rd | 1 man/rpost_rcpp.Rd | 1 man/rprior_quant.Rd | 6 man/set_prior.Rd | 5 man/venice.Rd | 4 tests/testthat/test-gp2.R | 50 + tests/testthat/test-predict_evpost.R | 100 +-- tests/testthat/test-rpost_bingp.R | 166 +++--- tests/testthat/test-rpost_bingp_weights.R | 2 tests/testthat/test-rpost_gp.R | 166 +++--- tests/testthat/test-rpost_gp_weights.R | 2 tests/testthat/test-rpost_kgaps.R | 88 +-- tests/testthat/test-upper.R | 2 vignettes/revdbayes-a-vignette.Rmd | 4 37 files changed, 1821 insertions(+), 910 deletions(-)
Title: Estimated Marginal Means, aka Least-Squares Means
Description: Obtain estimated marginal means (EMMs) for many linear, generalized
linear, and mixed models. Compute contrasts or linear functions of EMMs,
trends, and comparisons of slopes. Plots and other displays.
Least-squares means are discussed, and the term "estimated marginal means"
is suggested, in Searle, Speed, and Milliken (1980) Population marginal means
in the linear model: An alternative to least squares means, The American
Statistician 34(4), 216-221 <doi:10.1080/00031305.1980.10483031>.
Author: Russell Lenth [aut, cre, cph],
Henrik Singmann [ctb],
Jonathon Love [ctb],
Paul Buerkner [ctb],
Maxime Herve [ctb]
Maintainer: Russell Lenth <russell-lenth@uiowa.edu>
Diff between emmeans versions 1.4.7 dated 2020-05-25 and 1.4.8 dated 2020-06-26
DESCRIPTION | 10 +-- MD5 | 112 +++++++++++++++++++------------------ NAMESPACE | 2 NEWS.md | 26 ++++++++ R/MCMC-support.R | 33 ++++++++-- R/contrast.R | 31 ++++++++-- R/emm-contr.R | 4 - R/emmGrid-methods.R | 12 +++ R/emmeans.R | 12 ++- R/emmip.R | 18 +++-- R/emtrends.R | 39 ++++-------- R/plot.emm.R | 9 +- R/pwpp.R | 8 +- R/ref-grid.R | 19 +++++- R/summary.R | 29 ++++++--- R/transformations.R | 47 +++++++++++++-- build/vignette.rds |binary inst/doc/FAQs.html | 8 +- inst/doc/basics.html | 12 +-- inst/doc/comparisons.html | 12 +-- inst/doc/confidence-intervals.html | 16 ++--- inst/doc/interactions.html | 28 ++++----- inst/doc/messy-data.html | 10 +-- inst/doc/models.Rmd | 4 - inst/doc/models.html | 6 - inst/doc/predictions.html | 6 - inst/doc/sophisticated.html | 6 - inst/doc/transformations.R | 38 ++++++++++++ inst/doc/transformations.Rmd | 88 ++++++++++++++++++++++++++++- inst/doc/transformations.html | 107 +++++++++++++++++++++++++++++++++-- inst/doc/utilities.html | 6 - inst/doc/vignette-topics.Rmd | 8 ++ inst/doc/vignette-topics.html | 16 +++-- inst/doc/xplanations.html | 10 +-- inst/doc/xtending.html | 10 +-- man/MOats.Rd | 6 + man/auto.noise.Rd | 6 + man/contrast.Rd | 10 ++- man/emm_options.Rd | 14 ++++ man/emmip.Rd | 4 - man/emmobj.Rd | 4 - man/emtrends.Rd | 2 man/feedlot.Rd | 6 + man/fiber.Rd | 6 + man/make.tran.Rd | 28 +++++++-- man/neuralgia.Rd | 6 + man/nutrition.Rd | 6 + man/oranges.Rd | 6 + man/pigs.Rd | 6 + man/pwpm.Rd | 4 - man/summary.emmGrid.Rd | 28 ++++++--- tests |only vignettes/models.Rmd | 4 - vignettes/transformations.Rmd | 88 ++++++++++++++++++++++++++++- vignettes/vignette-topics.Rmd | 8 ++ 55 files changed, 789 insertions(+), 255 deletions(-)
Title: Interactive Plotting of Three-Way Differential Expression
Analysis
Description: Differential expression (DE) analysis can be used to discover quantitative changes in expression levels between experimental groups. Such results are typically visualised using volcano plots, however in cases where more than two experimental groups are involved, visualising results can become convoluted and it quickly becomes difficult to see the wood for the trees. This package provides easy-to-use functions to extract and visualise outputs from DE between three groups (primarily aimed at 'limma' and 'DESeq2' outputs). We present novel methods to map DE results into polar coordinates to enable users to combine and simultaneously view three sets of results. These graphics also possess optional 'plotly' outputs for interactive and three-dimensional functionality, as seen in Lewis et. al. (2019) <doi:10.1016/j.celrep.2019.07.091>.
Author: Katriona Goldmann [aut, cre],
Myles Lewis [aut, ctb]
Maintainer: Katriona Goldmann <k.goldmann@qmul.ac.uk>
Diff between volcano3D versions 1.0.0 dated 2020-06-04 and 1.0.1 dated 2020-06-26
volcano3D-1.0.0/volcano3D/vignettes/volcano.png |only volcano3D-1.0.1/volcano3D/DESCRIPTION | 9 volcano3D-1.0.1/volcano3D/MD5 | 37 +-- volcano3D-1.0.1/volcano3D/NEWS.md | 15 + volcano3D-1.0.1/volcano3D/R/boxplot_trio.R | 16 + volcano3D-1.0.1/volcano3D/R/polar_coords.R | 2 volcano3D-1.0.1/volcano3D/R/radial_ggplot.R | 46 +++ volcano3D-1.0.1/volcano3D/R/radial_plotly.R | 30 +- volcano3D-1.0.1/volcano3D/R/volcano3D.R | 85 ++++--- volcano3D-1.0.1/volcano3D/build/vignette.rds |binary volcano3D-1.0.1/volcano3D/inst/WORDLIST | 5 volcano3D-1.0.1/volcano3D/inst/doc/Vignette.R | 42 ++- volcano3D-1.0.1/volcano3D/inst/doc/Vignette.html | 208 ++++++++++++------ volcano3D-1.0.1/volcano3D/inst/doc/Vignette.rmd | 181 ++++++++++----- volcano3D-1.0.1/volcano3D/man/boxplot_trio.Rd | 3 volcano3D-1.0.1/volcano3D/man/radial_ggplot.Rd | 13 + volcano3D-1.0.1/volcano3D/man/radial_plotly.Rd | 13 + volcano3D-1.0.1/volcano3D/man/volcano3D.Rd | 28 +- volcano3D-1.0.1/volcano3D/vignettes/Vignette.rmd | 181 ++++++++++----- volcano3D-1.0.1/volcano3D/vignettes/radial_plotly.png |only volcano3D-1.0.1/volcano3D/vignettes/volcano3D.png |only 21 files changed, 626 insertions(+), 288 deletions(-)
Title: Optimal Channel Networks
Description: Generate and analyze Optimal Channel Networks (OCNs):
oriented spanning trees reproducing all scaling features characteristic
of real, natural river networks. As such, they can be used in a variety
of numerical experiments in the fields of hydrology, ecology and
epidemiology. See Carraro et al. (2020) <doi:10.1101/2020.02.17.948851>
for a presentation of the package; Rinaldo et al. (2014)
<doi:10.1073/pnas.1322700111> for a theoretical overview on the OCN
concept; Furrer and Sain (2010) <doi:10.18637/jss.v036.i10> for the
construct used.
Author: Luca Carraro [aut, cre],
Florian Altermatt [ctb],
Emanuel A. Fronhofer [ctb],
Reinhard Furrer [ctb],
Isabelle Gounand [ctb],
Andrea Rinaldo [ctb],
Enrico Bertuzzo [aut]
Maintainer: Luca Carraro <luca.carraro@hotmail.it>
Diff between OCNet versions 0.3.0 dated 2020-05-12 and 0.3.1 dated 2020-06-26
DESCRIPTION | 6 +++--- MD5 | 18 +++++++++--------- NEWS.md | 6 ++++++ man/create_OCN.Rd | 4 ++-- man/draw_contour_OCN.Rd | 4 ++-- man/draw_elev3D_OCN.Rd | 2 +- man/draw_elev3Drgl_OCN.Rd | 4 ++-- man/draw_thematic_OCN.Rd | 2 +- man/landscape_OCN.Rd | 4 ++-- man/paths_OCN.Rd | 2 +- 10 files changed, 29 insertions(+), 23 deletions(-)
Title: Calculation and Visualization of the Impact Effect Size Measure
Description: A non-parametric effect size measure capturing changes in central tendency or shape of data distributions. The package provides the necessary functions to calculate and plot the Impact effect size measure between two groups.
Author: Jorn Lotsch[aut,cre], Alfred Ultsch[aut]
Maintainer: Jorn Lotsch <j.loetsch@em.uni-frankfurt.de>
Diff between ImpactEffectsize versions 0.4.1 dated 2020-06-04 and 0.5.0 dated 2020-06-26
DESCRIPTION | 10 +++++----- MD5 | 17 +++++++++++------ NAMESPACE | 5 ++--- R/Impact.R | 17 ++++++++--------- R/ParetoDensityEstimationIE.R |only R/plot2Densities.R | 35 ++++++++++++++++------------------- data/FlowcytometricData.rda |only data/StocksFluctuation.rda |only man/FlowcytometricData.Rd |only man/Impact.Rd | 6 ++++++ man/SameMeansData.Rd | 2 +- man/StocksFluctuation.Rd |only 12 files changed, 49 insertions(+), 43 deletions(-)
More information about ImpactEffectsize at CRAN
Permanent link
Title: Making 'ggplot2' Plots Interactive with 'loon' and Vice Versa
Description: It provides a bridge between the 'loon' and 'ggplot2' packages. Data analysts who value the grammar pipeline provided by 'ggplot2' can turn these static plots into interactive 'loon' plots. Conversely, data analysts who explore data interactively with 'loon' can turn any 'loon' plot into a 'ggplot2' plot structure. The function 'loon.ggplot()' is applied to one plot structure will return the other.
Author: Zehao Xu [aut, cre],
R. Wayne Oldford [aut]
Maintainer: Zehao Xu <z267xu@uwaterloo.ca>
Diff between loon.ggplot versions 1.0.0 dated 2020-06-17 and 1.0.1 dated 2020-06-26
loon.ggplot-1.0.0/loon.ggplot/R/unexportedLoonFuns.R |only loon.ggplot-1.0.1/loon.ggplot/DESCRIPTION | 6 - loon.ggplot-1.0.1/loon.ggplot/MD5 | 36 +++--- loon.ggplot-1.0.1/loon.ggplot/NAMESPACE | 1 loon.ggplot-1.0.1/loon.ggplot/R/geom-imageGlyph.R | 62 +++++------ loon.ggplot-1.0.1/loon.ggplot/R/geom-pointrangeGlyph.R | 2 loon.ggplot-1.0.1/loon.ggplot/R/geom-polygonGlyph.R | 2 loon.ggplot-1.0.1/loon.ggplot/R/geom-serialAxesGlyph.R | 78 +++++++-------- loon.ggplot-1.0.1/loon.ggplot/R/geom-textGlyph.R | 6 - loon.ggplot-1.0.1/loon.ggplot/R/ggplot2loon_ggplot.R | 1 loon.ggplot-1.0.1/loon.ggplot/R/l_ggplot.R | 21 +++- loon.ggplot-1.0.1/loon.ggplot/R/loonHistogram.R | 10 + loon.ggplot-1.0.1/loon.ggplot/R/reexports.R | 4 loon.ggplot-1.0.1/loon.ggplot/R/unexportedFunctions.R |only loon.ggplot-1.0.1/loon.ggplot/inst/doc/ggplots2loon.html | 4 loon.ggplot-1.0.1/loon.ggplot/inst/doc/loon2ggplots.html | 4 loon.ggplot-1.0.1/loon.ggplot/inst/doc/pipes.Rmd | 2 loon.ggplot-1.0.1/loon.ggplot/inst/doc/pipes.html | 6 - loon.ggplot-1.0.1/loon.ggplot/man/reexports.Rd | 35 +++--- loon.ggplot-1.0.1/loon.ggplot/vignettes/pipes.Rmd | 2 20 files changed, 147 insertions(+), 135 deletions(-)
Title: Graphical Interaction Models
Description: Provides the following types of models: Models for contingency
tables (i.e. log-linear models) Graphical Gaussian models for multivariate
normal data (i.e. covariance selection models) Mixed interaction models.
Documentation about 'gRim' is provided by vignettes included in this
package and the book by Højsgaard, Edwards and Lauritzen (2012,
<doi:10.1007/978-1-4614-2299-0>); see 'citation("gRim")' for details.
Author: Søren Højsgaard <sorenh@math.aau.dk>
Maintainer: Søren Højsgaard <sorenh@math.aau.dk>
Diff between gRim versions 0.2.3 dated 2020-06-20 and 0.2.4 dated 2020-06-26
DESCRIPTION | 12 MD5 | 75 ++--- NEWS | 14 - R/cg-stats.R | 38 +- R/citest-array.R | 23 - R/citest-generic.R | 14 - R/citest-mvn.R | 19 - R/getEdges.R | 22 - R/grim-package.R | 6 R/grim-utilities.R | 7 R/imodel-cmod.R | 2 R/imodel-dmod.R | 16 - R/imodel-general.R | 15 - R/imodel-mmod.R | 33 +- R/imodel-plot-print.R | 24 - R/imodel-update.R | 80 ----- R/mi-dimension.R | 67 ---- R/mi-fit.R | 31 -- R/mi-parm-conversion.R | 26 - R/mi-weakdata.R | 28 +- R/mi-weakmodel.R | 4 R/test-all-edges.R | 207 ++++++--------- R/test-single-edges.R | 27 - R/test-stepwise.R | 400 +++++++++++++++++++++++------ inst/CITATION |only inst/doc/grim.pdf |binary man/cg-stats.Rd | 20 - man/citest-mvn.Rd | 2 man/getEdges.Rd | 2 man/imodel-dmod.Rd | 8 man/stepwise.Rd | 7 man/testdelete.Rd | 3 tests |only vignettes/figures/GRIM-011.pdf |binary vignettes/figures/GRIM-013.pdf |binary vignettes/figures/GRIM-015.pdf |binary vignettes/figures/GRIM-034.pdf |binary vignettes/figures/GRIM-035.pdf |binary vignettes/figures/GRIM-fundamentalfig1.pdf |binary 39 files changed, 611 insertions(+), 621 deletions(-)
Title: Fitting Autoregressive Censored Mixed-Effects Models
Description: It fits left, right or intervalar censored mixed-effects linear model with autoregressive errors of order p using the EM algorithm. It provides estimates, standard errors of the parameters and prediction of future observations. Florin Vaida and Lin Liu (2009) <doi:10.1198/jcgs.2009.07130>.
Author: Rommy C. Olivari,Aldo M. Garay and Victor H. Lachos
Maintainer: Rommy C. Olivari <rco1@de.ufpe.br>
Diff between ARpLMEC versions 1.0 dated 2019-01-09 and 1.1 dated 2020-06-26
ARpLMEC-1.0/ARpLMEC/R/ARpLMEC.est.R |only ARpLMEC-1.0/ARpLMEC/R/ARpLMEC.sim.R |only ARpLMEC-1.0/ARpLMEC/man/ARpLMEC.est.Rd |only ARpLMEC-1.0/ARpLMEC/man/ARpLMEC.sim.Rd |only ARpLMEC-1.1/ARpLMEC/DESCRIPTION | 21 +-- ARpLMEC-1.1/ARpLMEC/MD5 | 18 +- ARpLMEC-1.1/ARpLMEC/NAMESPACE | 24 +-- ARpLMEC-1.1/ARpLMEC/R/ARpMMEC.est.R |only ARpLMEC-1.1/ARpLMEC/R/ARpMMEC.sim.R |only ARpLMEC-1.1/ARpLMEC/R/EMCensArpL.R | 91 +++---------- ARpLMEC-1.1/ARpLMEC/R/FunGeral.R | 230 +++++++-------------------------- ARpLMEC-1.1/ARpLMEC/R/MMsimu.R | 15 +- ARpLMEC-1.1/ARpLMEC/man/ARpMMEC.est.Rd |only ARpLMEC-1.1/ARpLMEC/man/ARpMMEC.sim.Rd |only 14 files changed, 117 insertions(+), 282 deletions(-)
Title: Connector to 'CouchDB'
Description: Provides an interface to the 'NoSQL' database 'CouchDB'
(<http://couchdb.apache.org>). Methods are provided for managing
databases within 'CouchDB', including creating/deleting/updating/transferring,
and managing documents within databases. One can connect with a local
'CouchDB' instance, or a remote 'CouchDB' databases such as 'Cloudant'.
Documents can be inserted directly from vectors, lists, data.frames,
and 'JSON'. Targeted at 'CouchDB' v2 or greater.
Author: Scott Chamberlain [aut, cre] (<https://orcid.org/0000-0003-1444-9135>),
rOpenSci [fnd] (https://ropensci.org/)
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between sofa versions 0.3.0 dated 2018-01-03 and 0.4.0 dated 2020-06-26
sofa-0.3.0/sofa/inst/doc/sofa_vignette.Rmd |only sofa-0.3.0/sofa/inst/doc/sofa_vignette.html |only sofa-0.3.0/sofa/inst/vign |only sofa-0.3.0/sofa/man/attach_get.Rd |only sofa-0.3.0/sofa/vignettes/sofa_vignette.Rmd |only sofa-0.4.0/sofa/DESCRIPTION | 37 +- sofa-0.4.0/sofa/LICENSE | 2 sofa-0.4.0/sofa/MD5 | 176 +++++----- sofa-0.4.0/sofa/NAMESPACE | 2 sofa-0.4.0/sofa/NEWS.md | 30 + sofa-0.4.0/sofa/R/active_tasks.R | 4 sofa-0.4.0/sofa/R/attach.r | 55 ++- sofa-0.4.0/sofa/R/cushion.R | 134 ++++--- sofa-0.4.0/sofa/R/db_alldocs.R | 9 sofa-0.4.0/sofa/R/db_bulk_create.R | 12 sofa-0.4.0/sofa/R/db_bulk_get.R |only sofa-0.4.0/sofa/R/db_bulk_update.R | 4 sofa-0.4.0/sofa/R/db_changes.R | 20 - sofa-0.4.0/sofa/R/db_compact.R | 6 sofa-0.4.0/sofa/R/db_create.r | 10 sofa-0.4.0/sofa/R/db_delete.r | 4 sofa-0.4.0/sofa/R/db_explain.R | 4 sofa-0.4.0/sofa/R/db_index.R | 4 sofa-0.4.0/sofa/R/db_info.r | 4 sofa-0.4.0/sofa/R/db_list.r | 4 sofa-0.4.0/sofa/R/db_query.R | 44 ++ sofa-0.4.0/sofa/R/db_replicate.r | 6 sofa-0.4.0/sofa/R/design.R | 19 - sofa-0.4.0/sofa/R/design_search.R | 31 + sofa-0.4.0/sofa/R/doc_create.r | 31 + sofa-0.4.0/sofa/R/doc_delete.r | 7 sofa-0.4.0/sofa/R/doc_get.r | 21 - sofa-0.4.0/sofa/R/doc_head.r | 5 sofa-0.4.0/sofa/R/doc_update.r | 4 sofa-0.4.0/sofa/R/doc_upsert.R |only sofa-0.4.0/sofa/R/getattach.r | 30 - sofa-0.4.0/sofa/R/membership.R | 7 sofa-0.4.0/sofa/R/parse_df.R | 2 sofa-0.4.0/sofa/R/ping.r | 9 sofa-0.4.0/sofa/R/restart.R | 4 sofa-0.4.0/sofa/R/revisions.r | 6 sofa-0.4.0/sofa/R/session.R | 7 sofa-0.4.0/sofa/R/sofa-package.r | 16 sofa-0.4.0/sofa/R/uuids.r | 8 sofa-0.4.0/sofa/R/zzz.r | 23 + sofa-0.4.0/sofa/README.md | 105 ------ sofa-0.4.0/sofa/build/vignette.rds |binary sofa-0.4.0/sofa/inst/doc/query_tutorial.R | 2 sofa-0.4.0/sofa/inst/doc/query_tutorial.html | 187 ++++++++--- sofa-0.4.0/sofa/inst/doc/sofa.Rmd |only sofa-0.4.0/sofa/inst/doc/sofa.html |only sofa-0.4.0/sofa/man/Cushion.Rd | 252 +++++++++++---- sofa-0.4.0/sofa/man/active_tasks.Rd | 4 sofa-0.4.0/sofa/man/attach_get-defunct.Rd |only sofa-0.4.0/sofa/man/attachments.Rd | 54 +-- sofa-0.4.0/sofa/man/db_alldocs.Rd | 24 + sofa-0.4.0/sofa/man/db_bulk_create.Rd | 15 sofa-0.4.0/sofa/man/db_bulk_get.Rd |only sofa-0.4.0/sofa/man/db_bulk_update.Rd | 15 sofa-0.4.0/sofa/man/db_changes.Rd | 38 +- sofa-0.4.0/sofa/man/db_compact.Rd | 6 sofa-0.4.0/sofa/man/db_create.Rd | 10 sofa-0.4.0/sofa/man/db_delete.Rd | 4 sofa-0.4.0/sofa/man/db_explain.Rd | 22 + sofa-0.4.0/sofa/man/db_index.Rd | 4 sofa-0.4.0/sofa/man/db_info.Rd | 4 sofa-0.4.0/sofa/man/db_list.Rd | 4 sofa-0.4.0/sofa/man/db_query.Rd | 59 +++ sofa-0.4.0/sofa/man/db_replicate.Rd | 6 sofa-0.4.0/sofa/man/db_revisions.Rd | 6 sofa-0.4.0/sofa/man/design.Rd | 24 + sofa-0.4.0/sofa/man/design_search.Rd | 33 + sofa-0.4.0/sofa/man/doc_create.Rd | 35 +- sofa-0.4.0/sofa/man/doc_delete.Rd | 7 sofa-0.4.0/sofa/man/doc_get.Rd | 39 +- sofa-0.4.0/sofa/man/doc_head.Rd | 5 sofa-0.4.0/sofa/man/doc_update.Rd | 4 sofa-0.4.0/sofa/man/doc_upsert.Rd |only sofa-0.4.0/sofa/man/membership.Rd | 4 sofa-0.4.0/sofa/man/parse_df.Rd | 2 sofa-0.4.0/sofa/man/ping.Rd | 6 sofa-0.4.0/sofa/man/restart.Rd | 4 sofa-0.4.0/sofa/man/session.Rd | 4 sofa-0.4.0/sofa/man/sofa-package.Rd | 21 + sofa-0.4.0/sofa/man/uuids.Rd | 4 sofa-0.4.0/sofa/tests/testthat/helper-sofa.R | 14 sofa-0.4.0/sofa/tests/testthat/test-db_alldocs.R | 2 sofa-0.4.0/sofa/tests/testthat/test-db_bulk_create.R | 3 sofa-0.4.0/sofa/tests/testthat/test-db_bulk_get.R |only sofa-0.4.0/sofa/tests/testthat/test-db_bulk_update.R | 5 sofa-0.4.0/sofa/tests/testthat/test-db_info.R | 3 sofa-0.4.0/sofa/tests/testthat/test-db_query.R | 31 + sofa-0.4.0/sofa/tests/testthat/test-design_search.R |only sofa-0.4.0/sofa/tests/testthat/test-design_search_many.R |only sofa-0.4.0/sofa/tests/testthat/test-doc_create.R | 4 sofa-0.4.0/sofa/tests/testthat/test-doc_upsert.R |only sofa-0.4.0/sofa/vignettes/sofa.Rmd |only 97 files changed, 1263 insertions(+), 613 deletions(-)
Title: Geographic Data Analysis and Modeling
Description: Reading, writing, manipulating, analyzing and modeling of spatial data. The package implements basic and high-level functions for raster data and for vector data operations such as intersections. See the manual and tutorials on <https://rspatial.org/> to get started.
Author: Robert J. Hijmans [cre, aut] (<https://orcid.org/0000-0001-5872-2872>),
Jacob van Etten [ctb],
Michael Sumner [ctb],
Joe Cheng [ctb],
Dan Baston [ctb],
Andrew Bevan [ctb],
Roger Bivand [ctb],
Lorenzo Busetto [ctb],
Mort Canty [ctb],
David Forrest [ctb],
Aniruddha Ghosh [ctb],
Duncan Golicher [ctb],
Josh Gray [ctb],
Jonathan A. Greenberg [ctb],
Paul Hiemstra [ctb],
Kassel Hingee [ctb],
Institute for Mathematics Applied Geosciences [cph],
Charles Karney [ctb],
Matteo Mattiuzzi [ctb],
Steven Mosher [ctb],
Jakub Nowosad [ctb],
Edzer Pebesma [ctb],
Oscar Perpinan Lamigueiro [ctb],
Etienne B. Racine [ctb],
Barry Rowlingson [ctb],
Ashton Shortridge [ctb],
Bill Venables [ctb],
Rafael Wueest [ctb]
Maintainer: Robert J. Hijmans <r.hijmans@gmail.com>
Diff between raster versions 3.1-5 dated 2020-04-19 and 3.3-6 dated 2020-06-26
raster-3.1-5/raster/ChangeLog |only raster-3.3-6/raster/DESCRIPTION | 18 raster-3.3-6/raster/MD5 | 222 ++++----- raster-3.3-6/raster/NAMESPACE | 4 raster-3.3-6/raster/NEWS |only raster-3.3-6/raster/R/AAAClasses.R | 251 ++++------- raster-3.3-6/raster/R/AAgeneric_functions.R | 3 raster-3.3-6/raster/R/GDALtransient.R | 9 raster-3.3-6/raster/R/addLayer.R | 2 raster-3.3-6/raster/R/aggregate_sp.R | 18 raster-3.3-6/raster/R/arith.R | 23 - raster-3.3-6/raster/R/as.character.R | 2 raster-3.3-6/raster/R/bind.R | 8 raster-3.3-6/raster/R/brick.R | 17 raster-3.3-6/raster/R/buffer.R | 2 raster-3.3-6/raster/R/canProcessInMemory.R | 10 raster-3.3-6/raster/R/cellRowCol.R | 3 raster-3.3-6/raster/R/clamp.R | 93 +++- raster-3.3-6/raster/R/click.R | 6 raster-3.3-6/raster/R/coerce.R | 27 - raster-3.3-6/raster/R/compare.R | 4 raster-3.3-6/raster/R/compareCRS.R | 2 raster-3.3-6/raster/R/compare_Logical.R | 4 raster-3.3-6/raster/R/contour.R | 2 raster-3.3-6/raster/R/coverPolygons.R | 4 raster-3.3-6/raster/R/destair.R | 2 raster-3.3-6/raster/R/distance.R | 4 raster-3.3-6/raster/R/erase.R | 4 raster-3.3-6/raster/R/extractLines.R | 26 - raster-3.3-6/raster/R/extractPoints.R | 5 raster-3.3-6/raster/R/extractPoints_sp.R | 6 raster-3.3-6/raster/R/extractPolygons.R | 7 raster-3.3-6/raster/R/fasterize.R | 2 raster-3.3-6/raster/R/focalWeight.R | 4 raster-3.3-6/raster/R/gdal.R | 15 raster-3.3-6/raster/R/getData.R | 8 raster-3.3-6/raster/R/getValues.R | 26 - raster-3.3-6/raster/R/getValuesBlock.R | 59 -- raster-3.3-6/raster/R/getValuesRows.R | 45 - raster-3.3-6/raster/R/hdrBIL.R | 2 raster-3.3-6/raster/R/hdrEnvi.R | 4 raster-3.3-6/raster/R/hdrErdasRaw.R | 2 raster-3.3-6/raster/R/hdrPRJ.R | 2 raster-3.3-6/raster/R/hdrRaster.R | 2 raster-3.3-6/raster/R/hdrVRT.R | 2 raster-3.3-6/raster/R/indexReplace.R | 6 raster-3.3-6/raster/R/interpolate.R | 3 raster-3.3-6/raster/R/intersect_sp.R | 16 raster-3.3-6/raster/R/isLonLat.R | 2 raster-3.3-6/raster/R/math.R | 19 raster-3.3-6/raster/R/names.R | 14 raster-3.3-6/raster/R/netCDFtoRasterCD.R | 94 +--- raster-3.3-6/raster/R/netCDFwriteCD.R | 2 raster-3.3-6/raster/R/nsidcICE.R | 4 raster-3.3-6/raster/R/plot.R | 6 raster-3.3-6/raster/R/predict.R | 12 raster-3.3-6/raster/R/print.R | 2 raster-3.3-6/raster/R/projectRaster.R | 137 ++++-- raster-3.3-6/raster/R/projection.R | 189 ++++++-- raster-3.3-6/raster/R/quad.R | 76 +-- raster-3.3-6/raster/R/raster.R | 64 +- raster-3.3-6/raster/R/rasterFromASCII.R | 2 raster-3.3-6/raster/R/rasterFromBIL.R | 2 raster-3.3-6/raster/R/rasterFromGDAL.R | 11 raster-3.3-6/raster/R/rasterFromIDRISI.R | 2 raster-3.3-6/raster/R/rasterFromRasterFile.R | 9 raster-3.3-6/raster/R/rasterFromSAGA.R | 2 raster-3.3-6/raster/R/rasterFromXYZ.R | 2 raster-3.3-6/raster/R/rasterOptions.R | 6 raster-3.3-6/raster/R/rasterToPoints.R | 8 raster-3.3-6/raster/R/rasterToPolygons.R | 2 raster-3.3-6/raster/R/rasterizeLines.R | 2 raster-3.3-6/raster/R/rasterizePolygons.R | 4 raster-3.3-6/raster/R/read.R | 2 raster-3.3-6/raster/R/rectify.R | 33 - raster-3.3-6/raster/R/rotate.R | 2 raster-3.3-6/raster/R/sampleRandom.R | 2 raster-3.3-6/raster/R/sampleRegular.R | 4 raster-3.3-6/raster/R/sampleStratified.R | 2 raster-3.3-6/raster/R/select.R | 2 raster-3.3-6/raster/R/sf.R | 20 raster-3.3-6/raster/R/show.R | 8 raster-3.3-6/raster/R/simplifyPols.R | 2 raster-3.3-6/raster/R/sparse.R |only raster-3.3-6/raster/R/speasy.R | 4 raster-3.3-6/raster/R/stack.R | 6 raster-3.3-6/raster/R/stretch.R | 37 + raster-3.3-6/raster/R/summary.R | 12 raster-3.3-6/raster/R/symdif.R | 2 raster-3.3-6/raster/R/trim.R | 3 raster-3.3-6/raster/R/union_sp.R | 2 raster-3.3-6/raster/R/writeAllAscii.R | 6 raster-3.3-6/raster/R/writeStartStop.R | 14 raster-3.3-6/raster/inst/external/test.grd | 54 +- raster-3.3-6/raster/inst/external/test.gri |binary raster-3.3-6/raster/man/brick.Rd | 4 raster-3.3-6/raster/man/compareCRS.Rd | 2 raster-3.3-6/raster/man/density.Rd | 2 raster-3.3-6/raster/man/freq.Rd | 2 raster-3.3-6/raster/man/interpolate.Rd | 7 raster-3.3-6/raster/man/plot.Rd | 3 raster-3.3-6/raster/man/projectRaster.Rd | 3 raster-3.3-6/raster/man/projection.Rd | 17 raster-3.3-6/raster/man/raster.Rd | 340 +++++++-------- raster-3.3-6/raster/man/rasterFromXYZ.Rd | 4 raster-3.3-6/raster/man/reclassify.Rd | 6 raster-3.3-6/raster/man/rectify.Rd | 5 raster-3.3-6/raster/man/round.Rd | 2 raster-3.3-6/raster/man/spEasy.Rd | 6 raster-3.3-6/raster/man/stackSelect.Rd | 2 raster-3.3-6/raster/man/strech.Rd | 4 raster-3.3-6/raster/man/writeRaster.Rd | 4 raster-3.3-6/raster/man/zoom.Rd | 2 raster-3.3-6/raster/tests/testthat/test-getvaluesblock.R |only 114 files changed, 1182 insertions(+), 1109 deletions(-)
Title: Estimation of Marginal Treatment Effects using Local
Instrumental Variables
Description: In the generalized Roy model, the marginal treatment effect (MTE) can be used as
a building block for constructing conventional causal parameters such as the average treatment
effect (ATE) and the average treatment effect on the treated (ATT). Given a treatment selection
equation and an outcome equation, the function mte() estimates the MTE via the semiparametric
local instrumental variables method or the normal selection model. The function mte_at() evaluates
MTE at different values of the latent resistance u with a given X = x, and the function mte_tilde_at()
evaluates MTE projected onto the estimated propensity score. The function ace() estimates
population-level average causal effects such as ATE, ATT, or the marginal policy relevant
treatment effect.
Author: Xiang Zhou [aut, cre]
Maintainer: Xiang Zhou <xiang_zhou@fas.harvard.edu>
Diff between localIV versions 0.3.0 dated 2020-04-01 and 0.3.1 dated 2020-06-26
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS.md | 7 ++----- R/mte_tilde_at.R | 4 ++-- 4 files changed, 10 insertions(+), 13 deletions(-)
Title: R at the Command-Line via 'r'
Description: A scripting and command-line front-end
is provided by 'r' (aka 'littler') as a lightweight binary wrapper around
the GNU R language and environment for statistical computing and graphics.
While R can be used in batch mode, the r binary adds full support for
both 'shebang'-style scripting (i.e. using a hash-mark-exclamation-path
expression as the first line in scripts) as well as command-line use in
standard Unix pipelines. In other words, r provides the R language without
the environment.
Author: Dirk Eddelbuettel and Jeff Horner
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between littler versions 0.3.10 dated 2020-06-03 and 0.3.11 dated 2020-06-26
littler-0.3.10/littler/inst/examples/ncroxy.r |only littler-0.3.11/littler/ChangeLog | 28 +++++++++++++++ littler-0.3.11/littler/DESCRIPTION | 10 ++--- littler-0.3.11/littler/MD5 | 33 ++++++++---------- littler-0.3.11/littler/build/vignette.rds |binary littler-0.3.11/littler/configure | 18 ++++----- littler-0.3.11/littler/inst/NEWS.Rd | 4 +- littler-0.3.11/littler/inst/doc/littler-examples.Rmd | 9 ++++ littler-0.3.11/littler/inst/doc/littler-examples.html | 4 +- littler-0.3.11/littler/inst/doc/littler-faq.Rmd | 6 ++- littler-0.3.11/littler/inst/doc/littler-faq.html | 4 +- littler-0.3.11/littler/inst/examples/check.r | 16 ++++---- littler-0.3.11/littler/inst/examples/installGithub.r | 8 +--- littler-0.3.11/littler/inst/examples/rcc.r | 8 ++-- littler-0.3.11/littler/inst/examples/roxy.r | 13 +++++-- littler-0.3.11/littler/src/littler.c | 4 +- littler-0.3.11/littler/vignettes/littler-examples.Rmd | 9 ++++ littler-0.3.11/littler/vignettes/littler-faq.Rmd | 6 ++- 18 files changed, 118 insertions(+), 62 deletions(-)
Title: Data Manipulation Functions Implemented in C
Description: Basic functions, implemented in C, for large data manipulation. Fast vectorised ifelse()/nested if()/switch() functions, psum()/pprod() functions equivalent to pmin()/pmax() plus others which are missing from base R. Most of these functions are callable at C level.
Author: Morgan Jacob [aut, cre, cph]
Maintainer: Morgan Jacob <morgan.emailbox@gmail.com>
Diff between kit versions 0.0.2 dated 2020-05-24 and 0.0.3 dated 2020-06-26
kit-0.0.2/kit/src/nif.c |only kit-0.0.3/kit/DESCRIPTION | 8 kit-0.0.3/kit/MD5 | 39 ++-- kit-0.0.3/kit/NAMESPACE | 9 - kit-0.0.3/kit/R/call.R | 42 ++--- kit-0.0.3/kit/inst/NEWS.Rd | 169 +++++++++++--------- kit-0.0.3/kit/man/count.Rd | 90 +++++------ kit-0.0.3/kit/man/fpos.Rd | 110 ++++++------- kit-0.0.3/kit/man/funique.Rd |only kit-0.0.3/kit/man/iif.Rd | 100 ++++++------ kit-0.0.3/kit/man/nif.Rd | 136 ++++++++-------- kit-0.0.3/kit/man/psum.Rd | 184 +++++++++++----------- kit-0.0.3/kit/man/setlevels.Rd | 48 ++--- kit-0.0.3/kit/man/topn.Rd | 116 +++++++------- kit-0.0.3/kit/man/vswitch.Rd | 170 ++++++++++---------- kit-0.0.3/kit/src/dup.c |only kit-0.0.3/kit/src/iif.c | 334 ++++++++++++++++++++++++++++++++++------- kit-0.0.3/kit/src/init.c | 9 - kit-0.0.3/kit/src/kit.h | 19 +- kit-0.0.3/kit/src/psum.c | 56 +++++- kit-0.0.3/kit/src/topn.c | 4 kit-0.0.3/kit/src/utils.c | 249 ++++++++++-------------------- 22 files changed, 1049 insertions(+), 843 deletions(-)
Title: Covariate Balance Tables and Plots
Description: Generate balance tables and plots for covariates of groups preprocessed through matching, weighting or subclassification, for example, using propensity scores. Includes integration with 'MatchIt', 'twang', 'Matching', 'optmatch', 'CBPS', 'ebal', 'WeightIt', 'cem', 'sbw', and 'designmatch' for assessing balance on the output of their preprocessing functions. Users can also specify data for balance assessment not generated through the above packages. Also included are methods for assessing balance in clustered or multiply imputed data sets or data sets with longitudinal treatments.
Author: Noah Greifer [aut, cre] (<https://orcid.org/0000-0003-3067-7154>)
Maintainer: Noah Greifer <noah.greifer@gmail.com>
Diff between cobalt versions 4.2.1 dated 2020-06-20 and 4.2.2 dated 2020-06-26
DESCRIPTION | 6 MD5 | 40 ++-- NEWS.md | 6 R/SHARED.R | 164 +++++------------ R/bal.plot.R | 30 +-- R/bal.sum.R | 16 - R/base.bal.tab.R | 4 R/functions_for_processing.R | 273 +++++++++++++---------------- R/get.w.R | 17 - R/love.plot.R | 10 - R/print.bal.tab.R | 12 - R/utilities.R | 2 R/x2base.R | 113 +++++------- build/partial.rdb |binary inst/doc/cobalt_A0_basic_use.html | 24 +- inst/doc/cobalt_A1_other_packages.html | 50 ++--- inst/doc/cobalt_A2_segmented_data.html | 116 ++++++------ inst/doc/cobalt_A3_longitudinal_treat.html | 6 inst/doc/cobalt_A4_love.plot.html | 8 man/bal.plot.Rd | 2 man/bal.tab.sbw.Rd | 4 21 files changed, 408 insertions(+), 495 deletions(-)
Title: Some Additional Distributions
Description: Provides the density, distribution, quantile and generation functions of some obscure probability
distributions, including the doubly non-central t, F, Beta, and Eta distributions;
the lambda-prime and K-prime; the upsilon distribution; the (weighted) sum of
non-central chi-squares to a power; the (weighted) sum of log non-central chi-squares;
the product of non-central chi-squares to powers; the product of doubly non-central
F variables; the product of independent normals.
Author: Steven E. Pav [aut, cre] (<https://orcid.org/0000-0002-4197-6195>)
Maintainer: Steven E. Pav <shabbychef@gmail.com>
Diff between sadists versions 0.2.3 dated 2017-03-20 and 0.2.4 dated 2020-06-26
ChangeLog | 11 +++++++++ DESCRIPTION | 33 ++++++++++++++------------- MD5 | 60 +++++++++++++++++++++++++------------------------- R/dnbeta.r | 6 ++--- R/dneta.r | 12 ++++++---- R/dnf.r | 6 ++--- R/dnt.r | 2 - R/proddnf.r | 6 ++--- R/sadists.r | 5 ++++ R/upsilon.r | 47 ++++++++++++++++++++------------------- README.md | 2 - build/vignette.rds |binary inst/doc/sadists.R | 2 - inst/doc/sadists.Rnw | 5 ++-- inst/doc/sadists.pdf |binary man/NEWS.Rd | 7 +++++ man/ddnbeta.Rd | 15 +++++------- man/ddneta.Rd | 22 ++++++++++-------- man/ddnf.Rd | 15 +++++------- man/ddnt.Rd | 11 ++++----- man/dkprime.Rd | 9 +++---- man/dlambdap.Rd | 11 ++++----- man/dprodchisqpow.Rd | 9 +++---- man/dproddnf.Rd | 15 +++++------- man/dprodnormal.Rd | 3 -- man/dsumchisqpow.Rd | 9 +++---- man/dsumlogchisq.Rd | 9 +++---- man/dupsilon.Rd | 56 +++++++++++++++++++++++----------------------- man/runExample.Rd | 7 ++--- man/sadists.Rd | 9 +++---- vignettes/sadists.Rnw | 5 ++-- 31 files changed, 215 insertions(+), 194 deletions(-)
Title: Recursive Modified Pattern Search on Hyper-Rectangle
Description: Optimization of any Black-Box/Non-Convex Function on Hyper-Rectangular Parameter Space. It uses a Variation of Pattern Search Technique. Described in the paper : Das (2016) <arXiv:1604.08616> .
Author: Priyam Das [cre, aut],
Debsurya De [aut]
Maintainer: Priyam Das <pdas@ncsu.edu>
Diff between RMPSH versions 1.1.0 dated 2020-06-25 and 1.1.1 dated 2020-06-26
DESCRIPTION | 6 +++--- MD5 | 6 +++--- man/RMPSH-package.Rd | 2 +- src/update.cpp | 5 ++--- 4 files changed, 9 insertions(+), 10 deletions(-)
Title: Predictive Data Analysis System
Description: Perform a supervised data analysis on a database through a 'shiny' graphical interface. It includes methods such as K-Nearest Neighbors, Decision Trees, ADA Boosting, Extreme Gradient Boosting, Random Forest, Neural Networks, Deep Learning, Support Vector Machines and Bayesian Methods.
Author: Oldemar Rodriguez R. with contributions from Diego Jimenez A. and Andres Navarro D.
Maintainer: Oldemar Rodriguez <oldemar.rodriguez@ucr.ac.cr>
Diff between predictoR versions 1.1.0 dated 2019-06-24 and 1.1.2 dated 2020-06-26
DESCRIPTION | 10 +++++----- MD5 | 8 ++++---- inst/application/global.R | 20 +++++++++++--------- inst/application/server.R | 2 +- inst/application/ui.R | 2 +- 5 files changed, 22 insertions(+), 20 deletions(-)
Title: Lambert-W Function
Description: Implements both real-valued branches of the Lambert-W function (Corless et al, 1996) <doi:10.1007/BF02124750> without the need for installing the entire GSL.
Author: Avraham Adler [aut, cph, cre] (<https://orcid.org/0000-0002-3039-0703>)
Maintainer: Avraham Adler <Avraham.Adler@gmail.com>
Diff between lamW versions 1.3.2 dated 2020-05-25 and 1.3.3 dated 2020-06-26
DESCRIPTION | 16 ++++++++-------- MD5 | 19 ++++++++++--------- README.md | 15 +++++++++------ build/partial.rdb |binary inst/CITATION | 4 ++-- inst/News.Rd | 33 +++++++++++++++++++++++++++------ man/lamW-package.Rd | 13 ++++++------- man/lamW.Rd | 38 ++++++++++++++++++++++++++++++++------ src/lambertW.cpp | 29 ++++++++++++++--------------- tests/testthat/test-lamW.R | 9 +++++++-- tests/testthat/test-package.R |only 11 files changed, 115 insertions(+), 61 deletions(-)
Title: Inventory Analytics and Cost Calculations
Description: Simulate inventory policies, facilitate inventory analysis calculations such as stock levels and re-order points,pricing and promotions calculations.
The package includes calculations of inventory metrics, stock-out calculations and ABC analysis calculations.
The package includes revenue management techniques such as Multi-product optimization,logit model optimization.
The functions are referenced from :
1-Harris, Ford W. (1913). "How many parts to make at once". Factory, The Magazine of Management. <isbn10: 135–136, 152>.
2- Nahmias, S. Production and Operations Analysis. McGraw-Hill International Edition. <isbn: 0-07- 2231265-3. Chapter 4>.
3-Silver, E.A., Pyke, D.F., Peterson, R. Inventory Management and Production Planning and Scheduling. <isbn: 978-0471119470>.
4-Ballou, R.H. Business Logistics Management. <isbn: 978-0130661845>. Chapter 9.
5-MIT Micromasters Program.
6- Columbia University course for supply and demand analysis.
8- Price Elasticity of Demand MATH 104,Mark Mac Lean (with assistance from Patrick Chan) 2011W
For further details or correspondence :<www.linkedin.com/in/haythamomar>, <www.rescaleanalytics.com>.
Author: Haytham Omar [aut, cre]
Maintainer: Haytham Omar <haytham@rescaleanalytics.com>
Diff between inventorize versions 1.0.4 dated 2020-06-25 and 1.0.5 dated 2020-06-26
DESCRIPTION | 8 ++++---- MD5 | 18 +++++++++--------- R/Sim_min_Q_pois.R | 10 +++++++--- R/Sim_min_q_normal.R | 14 +++++++++----- R/Sim_minmax_normal.R | 18 +++++++++++++----- R/Sim_minmax_pois.R | 9 ++++++--- man/sim_min_Q_normal.Rd | 9 ++++++--- man/sim_min_Q_pois.Rd | 9 ++++++--- man/sim_minmax_normal.Rd | 9 ++++++--- man/sim_minmax_pois.Rd | 8 +++++--- 10 files changed, 71 insertions(+), 41 deletions(-)
Title: Identification and Classification of the Most Influential Nodes
Description: Contains functions for the classification and ranking of top candidate features, reconstruction of networks from
adjacency matrices and data frames, analysis of the topology of the network
and calculation of centrality measures, and identification of the most
influential nodes. Also, a function is provided for running SIRIR model, which
is the combination of leave-one-out cross validation technique and the conventional SIR model, on a network to unsupervisedly rank the true influence of vertices. Additionally, some functions have been provided for the assessment
of dependence and correlation of two network centrality measures as well as
the conditional probability of deviation from their corresponding means in opposite direction.
Fred Viole and David Nawrocki (2013, ISBN:1490523995).
Csardi G, Nepusz T (2006). "The igraph software package for complex network research." InterJournal, Complex Systems, 1695.
Adopted algorithms and sources are referenced in function document.
Author: Adrian (Abbas) Salavaty [aut, cre], Mirana Ramialison [ths], Peter D. Currie [ths]
Maintainer: Adrian Salavaty <abbas.salavaty@gmail.com>
Diff between influential versions 1.1.1 dated 2020-06-24 and 1.1.2 dated 2020-06-26
influential-1.1.1/influential/man/diff.data.assembly.Rd |only influential-1.1.2/influential/DESCRIPTION | 6 influential-1.1.2/influential/MD5 | 20 +- influential-1.1.2/influential/NAMESPACE | 2 influential-1.1.2/influential/NEWS.md | 6 influential-1.1.2/influential/R/functions.R | 130 ++++++++------- influential-1.1.2/influential/inst/doc/Vignettes.Rmd | 2 influential-1.1.2/influential/inst/doc/Vignettes.html | 38 ++-- influential-1.1.2/influential/man/diff_data.assembly.Rd |only influential-1.1.2/influential/man/exir.Rd | 8 influential-1.1.2/influential/man/influential-package.Rd | 6 influential-1.1.2/influential/vignettes/Vignettes.Rmd | 2 12 files changed, 123 insertions(+), 97 deletions(-)
Title: An R Package for the Stochastic Simulation of Disease Spreading
in Dynamic Networks
Description: Simulates stochastic hybrid models for transmission of infectious
diseases in dynamic networks. It is a metapopulation model in which each
node in the network is a sub-population and disease spreads within nodes
and among them, combining two approaches: stochastic simulation algorithm
(<doi:10.1146/annurev.physchem.58.032806.104637>) and individual-based
approach, respectively. Equations that models spread within nodes are
customizable and there are two link types among nodes: migration and
influence (commuting). More information in Fernando S. Marques,
Jose H. H. Grisi-Filho, Marcos Amaku et al. (2020) <doi:10.18637/jss.v094.i06>.
Author: Fernando S. Marques [aut, cre],
Jose H. H. Grisi-Filho [aut],
Marcos Amaku [aut]
Maintainer: Fernando S. Marques <fernandosix@gmail.com>
Diff between hybridModels versions 0.3.6 dated 2020-04-16 and 0.3.7 dated 2020-06-26
DESCRIPTION | 21 +++++++++++---------- MD5 | 24 ++++++++++++------------ NEWS | 7 +++++++ R/find_contact_chain.R | 25 +++++++++++++++---------- R/hybrid_Model.R | 8 +++++++- R/plot_HM.R | 6 ++++++ R/summary_HM.R | 6 ++++++ README.md | 11 ++++++----- inst/CITATION | 33 ++++++++++++++++++++++----------- man/findContactChain.Rd | 25 +++++++++++++++---------- man/hybridModel.Rd | 8 +++++++- man/plot.Rd | 6 ++++++ man/summary.Rd | 6 ++++++ 13 files changed, 126 insertions(+), 60 deletions(-)
Title: Exploratory Data Analysis System
Description: Performs an exploratory data analysis through a 'shiny' interface. It includes basic methods such as the mean, median, mode, normality test, among others. It also includes clustering techniques such as Principal Components Analysis, Hierarchical Clustering and the K-Means Method.
Author: Oldemar Rodriguez R. with contributions from Diego Jimenez A. and Andres Navarro D.
Maintainer: Oldemar Rodriguez <oldemar.rodriguez@ucr.ac.cr>
Diff between discoveR versions 1.2.4 dated 2020-01-13 and 1.2.7 dated 2020-06-26
DESCRIPTION | 6 MD5 | 14 +- inst/application/biblioteca.R | 105 +++++++++++++++ inst/application/global.R | 26 ++- inst/application/server.R | 240 ++++++++++++++++++----------------- inst/application/ui.R | 39 +++-- inst/application/www/diccionario.csv | 2 inst/application/www/translation.bin |binary 8 files changed, 283 insertions(+), 149 deletions(-)
Title: Efficient Computations of Standard Clustering Comparison
Measures
Description: Implements an efficient O(n) algorithm based on bucket-sorting for
fast computation of standard clustering comparison measures. Available measures
include adjusted Rand index (ARI), normalized information distance (NID),
normalized mutual information (NMI), adjusted mutual information (AMI),
normalized variation information (NVI) and entropy, as described in Vinh et al (2009)
<doi:10.1145/1553374.1553511>. Include AMI (Adjusted Mutual Information) since version 0.1.2,
a modified version of ARI (MARI) and simple Chi-square distance since version 1.0.0.
Author: Julien Chiquet [aut, cre] (<https://orcid.org/0000-0002-3629-3429>),
Guillem Rigaill [aut],
Martina Sundqvist [aut],
Valentin Dervieux [ctb]
Maintainer: Julien Chiquet <julien.chiquet@inrae.fr>
Diff between aricode versions 0.1.2 dated 2019-06-29 and 1.0.0 dated 2020-06-26
aricode-0.1.2/aricode/NEWS |only aricode-1.0.0/aricode/DESCRIPTION | 23 +- aricode-1.0.0/aricode/MD5 | 29 +- aricode-1.0.0/aricode/NAMESPACE | 3 aricode-1.0.0/aricode/NEWS.md |only aricode-1.0.0/aricode/R/RcppExports.R | 4 aricode-1.0.0/aricode/R/aricode-package.R | 12 - aricode-1.0.0/aricode/R/aricode.R | 183 ++++++++++++++---- aricode-1.0.0/aricode/inst/WORDLIST |only aricode-1.0.0/aricode/man/Chi2.Rd |only aricode-1.0.0/aricode/man/MARI.Rd |only aricode-1.0.0/aricode/man/MARIraw.Rd |only aricode-1.0.0/aricode/man/aricode.Rd | 14 - aricode-1.0.0/aricode/man/clustComp.Rd | 2 aricode-1.0.0/aricode/src/RcppExports.cpp | 12 + aricode-1.0.0/aricode/src/aricode.cpp | 43 ++++ aricode-1.0.0/aricode/tests/spelling.R |only aricode-1.0.0/aricode/tests/testthat/test_coherence.R | 111 ++++++++++ aricode-1.0.0/aricode/tests/testthat/test_input.R | 10 19 files changed, 371 insertions(+), 75 deletions(-)
Title: Fundamental Clustering Problems Suite
Description: Many conventional clustering algorithms are provided in this package with consistent input and output, which enables the user to try out algorithms swiftly. Additionally, 26 statistical approaches for the estimation of the number of clusters as well as the the mirrored density plot (MD-plot) of clusterability are implemented. Moreover, the fundamental clustering problems suite (FCPS) offers a variety of clustering challenges any algorithm should handle when facing real world data, see Thrun, M.C., Ultsch A.: "Clustering Benchmark Datasets Exploiting the Fundamental Clustering Problems" (2020), Data in Brief, <DOI:10.1016/j.dib.2020.105501>.
Author: Michael Thrun [aut, cre, cph] (<https://orcid.org/0000-0001-9542-5543>),
Quirin Stier [ctb, rev],
Peter Nahrgang [ctr, ctb],
Felix Pape [ctr, ctb],
Vasyl Pihur [ctb],
Guy Brock [ctb],
Susmita Datta [ctb],
Somnath Datta [ctb],
Luis Winckelmann [com],
Alfred Ultsch [dtc, ctb]
Maintainer: Michael Thrun <m.thrun@gmx.net>
Diff between FCPS versions 1.2.2 dated 2020-06-07 and 1.2.3 dated 2020-06-26
DESCRIPTION | 14 +- MD5 | 24 +-- R/ClusterApply.R | 190 +++++++++++++++------------ R/ClusterPlotMDS.R | 45 ++++-- build/partial.rdb |binary inst/doc/FCPS.html | 16 +- man/AutomaticProjectionBasedClustering.Rd | 206 +++++++++++++++--------------- man/ClusterApply.Rd | 124 +++++++++--------- man/ClusterDendrogram.Rd | 128 +++++++++--------- man/ClusterPlotMDS.Rd | 173 +++++++++++++------------ man/DBscan.Rd | 2 man/MinimalEnergyClustering.Rd | 2 man/MinimaxLinkageClustering.Rd | 8 - 13 files changed, 494 insertions(+), 438 deletions(-)
More information about riskCommunicator at CRAN
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More information about RcmdrPlugin.WorldFlora at CRAN
Permanent link
Title: R Source Code Similarity Evaluation
Description: An implementation of a novel method to quantify the similarity
of the code-base of R functions by means of program dependence graphs.
Possible use cases include detection of code clones for improving
software quality and of plagiarism amongst students' assignments.
Author: Maciej Bartoszuk [aut, cre] (<https://orcid.org/0000-0001-6088-8273>),
Marek Gagolewski [aut] (<https://orcid.org/0000-0003-0637-6028>)
Maintainer: Maciej Bartoszuk <bartoszuk@rexamine.com>
Diff between SimilaR versions 1.0.7 dated 2020-04-06 and 1.0.8 dated 2020-06-26
SimilaR-1.0.7/SimilaR/R/SimilaR_fromTwoFunctions.R |only SimilaR-1.0.7/SimilaR/man/SimilaR_fromTwoFunctions.Rd |only SimilaR-1.0.8/SimilaR/DESCRIPTION | 17 SimilaR-1.0.8/SimilaR/MD5 | 24 SimilaR-1.0.8/SimilaR/R/SimilaR_fromDirectory.R | 109 + SimilaR-1.0.8/SimilaR/R/SimilaR_general.R | 2 SimilaR-1.0.8/SimilaR/R/antiplagiarism.R | 2 SimilaR-1.0.8/SimilaR/R/load.R | 17 SimilaR-1.0.8/SimilaR/R/similar-package.R | 4 SimilaR-1.0.8/SimilaR/man/SimilaR-package.Rd | 3 SimilaR-1.0.8/SimilaR/man/SimilaR_fromDirectory.Rd | 90 + SimilaR-1.0.8/SimilaR/tests/testthat/test-SimilaR_fromDirectory.R | 44 SimilaR-1.0.8/SimilaR/tests/testthat/test-SimilaR_fromTwoFunctions.R | 64 - SimilaR-1.0.8/SimilaR/tests/testthat/test-algorithm.R | 638 ++++------ 14 files changed, 566 insertions(+), 448 deletions(-)
Title: Manipulation of Microsoft Word and PowerPoint Documents
Description: Access and manipulate 'Microsoft Word' and 'Microsoft PowerPoint' documents from R.
The package focuses on tabular and graphical reporting from R; it also provides two functions
that let users get document content into data objects. A set of functions
lets add and remove images, tables and paragraphs of text in new or existing documents.
When working with 'PowerPoint' presentations, slides can be added or removed; shapes inside
slides can also be added or removed. When working with 'Word' documents, a cursor can be
used to help insert or delete content at a specific location in the document. The package
does not require any installation of Microsoft products to be able to write Microsoft files.
Author: David Gohel [aut, cre],
Frank Hangler [ctb] (function body_replace_all_text),
Liz Sander [ctb] (several documentation fixes),
Anton Victorson [ctb] (fixes xml structures),
Jon Calder [ctb] (update vignettes),
John Harrold [ctb] (fuction annotate_base),
John Muschelli [ctb] (google doc compatibility)
Maintainer: David Gohel <david.gohel@ardata.fr>
Diff between officer versions 0.3.11 dated 2020-05-18 and 0.3.12 dated 2020-06-26
officer-0.3.11/officer/man/sections.Rd |only officer-0.3.12/officer/DESCRIPTION | 6 officer-0.3.12/officer/MD5 | 35 - officer-0.3.12/officer/NAMESPACE | 2 officer-0.3.12/officer/NEWS | 17 officer-0.3.12/officer/R/docx_add.R | 15 officer-0.3.12/officer/R/docx_section.R | 270 +++++----- officer-0.3.12/officer/R/knitr_utils.R | 11 officer-0.3.12/officer/R/read_docx.R | 4 officer-0.3.12/officer/README.md | 6 officer-0.3.12/officer/build/vignette.rds |binary officer-0.3.12/officer/inst/doc/overview.html | 29 + officer-0.3.12/officer/inst/template/template.docx |binary officer-0.3.12/officer/man/body_add.Rd | 12 officer-0.3.12/officer/man/body_end_block_section.Rd |only officer-0.3.12/officer/man/body_end_section_columns.Rd |only officer-0.3.12/officer/man/body_end_section_columns_landscape.Rd |only officer-0.3.12/officer/man/body_end_section_continuous.Rd |only officer-0.3.12/officer/man/body_end_section_landscape.Rd |only officer-0.3.12/officer/man/body_end_section_portrait.Rd |only officer-0.3.12/officer/tests/testthat/test-docx-add.R | 22 officer-0.3.12/officer/tests/testthat/test-docx-misc.R | 8 22 files changed, 272 insertions(+), 165 deletions(-)
Title: The 'jamovi' Analyses
Description: A suite of common statistical methods such as descriptives,
t-tests, ANOVAs, regression, correlation matrices, proportion tests,
contingency tables, and factor analysis. This package is also useable from
the 'jamovi' statistical spreadsheet (see <https://www.jamovi.org> for more
information).
Author: Ravi Selker, Jonathon Love, Damian Dropmann
Maintainer: Jonathon Love <jon@thon.cc>
Diff between jmv versions 1.2.5 dated 2020-02-17 and 1.2.23 dated 2020-06-26
DESCRIPTION | 14 ++-- MD5 | 142 +++++++++++++++++++++---------------------- R/ancova.b.R | 68 +++++++++++++++----- R/ancova.h.R | 21 +++++- R/anova.b.R | 6 + R/anova.h.R | 19 ++++- R/anovanp.h.R | 3 R/anovaonew.b.R | 9 +- R/anovaonew.h.R | 11 +-- R/anovarm.b.R | 25 +++++-- R/anovarm.h.R | 9 +- R/anovarmnp.h.R | 3 R/cfa.h.R | 3 R/conttables.h.R | 3 R/conttablespaired.h.R | 3 R/corrmatrix.b.R | 4 - R/corrmatrix.h.R | 9 +- R/descriptives.b.R | 50 ++++++++------- R/descriptives.h.R | 3 R/efa.h.R | 3 R/html.b.R | 2 R/html.h.R | 3 R/linreg.b.R | 17 +++++ R/linreg.h.R | 7 +- R/loglinear.b.R | 2 R/loglinear.h.R | 3 R/logregbin.b.R | 2 R/logregbin.h.R | 3 R/logregmulti.b.R | 2 R/logregmulti.h.R | 3 R/logregord.h.R | 3 R/mancova.h.R | 3 R/pca.h.R | 3 R/proptest2.h.R | 3 R/proptestn.h.R | 3 R/reliability.h.R | 3 R/ttestis.b.R | 94 +++++++++++++++++++--------- R/ttestis.h.R | 132 ++++++++++++++++++++++++++++++--------- R/ttestones.b.R | 70 +++++++++++++++------ R/ttestones.h.R | 120 ++++++++++++++++++++++++++---------- R/ttestps.b.R | 37 ++++++++--- R/ttestps.h.R | 108 +++++++++++++++++++++++++------- build/vignette.rds |binary inst/doc/new-syntax.Rmd | 6 - inst/doc/new-syntax.html | 4 - man/ANOVA.Rd | 34 ++++++++-- man/ancova.Rd | 35 ++++++++-- man/anovaOneW.Rd | 28 ++++++-- man/anovaRM.Rd | 39 ++++++++--- man/anovaRMNP.Rd | 10 ++- man/cfa.Rd | 29 ++++++-- man/contTables.Rd | 32 +++++++-- man/contTablesPaired.Rd | 15 +++- man/corrMatrix.Rd | 20 ++++-- man/descriptives.Rd | 42 ++++++++++-- man/efa.Rd | 23 +++++- man/linReg.Rd | 44 ++++++++++--- man/logLinear.Rd | 30 +++++++-- man/logRegBin.Rd | 46 ++++++++++--- man/logRegMulti.Rd | 32 +++++++-- man/logRegOrd.Rd | 25 ++++++- man/mancova.Rd | 13 +++ man/pca.Rd | 21 ++++-- man/propTest2.Rd | 19 ++++- man/propTestN.Rd | 3 man/reliability.Rd | 19 ++++- man/ttestIS.Rd | 45 ++++++++++--- man/ttestOneS.Rd | 39 +++++++++-- man/ttestPS.Rd | 36 ++++++++-- tests/testthat/testanovarm.R | 31 +++++++++ tests/testthat/testttestis.R | 12 ++- vignettes/new-syntax.Rmd | 6 - 72 files changed, 1295 insertions(+), 474 deletions(-)
More information about BasketballAnalyzeR at CRAN
Permanent link
Title: Analysis of Two-Way Tables
Description: Carries out analyses of two-way tables with one observation per cell, together with graphical displays
for an additive fit and
a diagnostic plot for removable 'non-additivity' via a power transformation of the response.
It implements Tukey's Exploratory Data Analysis (1973) <ISBN: 978-0201076165> methods, including a
1-degree-of-freedom test for row*column 'non-additivity', linear in the row and column effects.
Author: Michael Friendly [aut, cre] (<https://orcid.org/0000-0002-3237-0941>),
Richard M. Heiberger [aut],
John Fox [ctb]
Maintainer: Michael Friendly <friendly@yorku.ca>
Diff between twoway versions 0.6.2 dated 2018-08-24 and 0.6.3 dated 2020-06-26
twoway-0.6.2/twoway/build |only twoway-0.6.2/twoway/inst |only twoway-0.6.2/twoway/vignettes |only twoway-0.6.3/twoway/DESCRIPTION | 21 +++++++++--------- twoway-0.6.3/twoway/MD5 | 21 ++++++++---------- twoway-0.6.3/twoway/NEWS.md | 17 +++++++++++++-- twoway-0.6.3/twoway/R/medianfit.R | 37 +++++++++++++++++---------------- twoway-0.6.3/twoway/R/plot.twoway.R | 26 ++++++++++++----------- twoway-0.6.3/twoway/R/twoway.R | 3 +- twoway-0.6.3/twoway/demo |only twoway-0.6.3/twoway/man/meanfit.Rd | 3 +- twoway-0.6.3/twoway/man/plot.twoway.Rd | 8 +++++-- 12 files changed, 79 insertions(+), 57 deletions(-)
Title: Bindings for the 'Geospatial' Data Abstraction Library
Description: Provides bindings to the 'Geospatial' Data Abstraction Library ('GDAL') (>= 1.11.4) and access to projection/transformation operations from the 'PROJ' library. Use is made of classes defined in the 'sp' package. Raster and vector map data can be imported into R, and raster and vector 'sp' objects exported. The 'GDAL' and 'PROJ' libraries are external to the package, and, when installing the package from source, must be correctly installed first; it is important that 'GDAL' < 3 be matched with 'PROJ' < 6. From 'rgdal' 1.5-8, installed with to 'GDAL' >=3, 'PROJ' >=6 and 'sp' >= 1.4, coordinate reference systems use 'WKT2_2019' strings, not 'PROJ' strings. 'Windows' and 'macOS' binaries (including 'GDAL', 'PROJ' and their dependencies) are provided on 'CRAN'.
Author: Roger Bivand [cre, aut] (<https://orcid.org/0000-0003-2392-6140>),
Tim Keitt [aut],
Barry Rowlingson [aut, ctb],
Edzer Pebesma [ctb],
Michael Sumner [ctb],
Robert Hijmans [ctb],
Even Rouault [cph, ctb],
Frank Warmerdam [cph, ctb],
Jeroen Ooms [ctb],
Colin Rundel [ctb]
Maintainer: Roger Bivand <Roger.Bivand@nhh.no>
Diff between rgdal versions 1.5-10 dated 2020-06-09 and 1.5-12 dated 2020-06-26
ChangeLog | 62 ++ DESCRIPTION | 12 MD5 | 58 +- R/AAA.R | 17 R/gdal.R | 16 R/ogr.R | 12 R/ogr_sp.R | 19 R/project.R | 14 R/wrappers.R | 16 build/vignette.rds |binary configure | 649 +++++++------------------- configure.ac | 15 inst/ChangeLog | 62 ++ inst/SVN_VERSION | 2 inst/doc/CRS_projections_transformations.R | 10 inst/doc/CRS_projections_transformations.Rmd | 12 inst/doc/CRS_projections_transformations.html | 160 ++---- inst/doc/OGR_shape_encoding.pdf |binary inst/doc/PROJ6_GDAL3.html | 20 man/llgrid.Rd | 6 man/projInfo.Rd | 6 man/readGDAL.Rd | 2 src/init.c | 1 src/proj6.cpp | 211 +++++--- src/proj_info6.cpp | 12 src/proj_network7.cpp | 1 src/projectit.cpp | 4 src/rgdal.h | 1 tests/test_proj.Rout.save | 2 vignettes/CRS_projections_transformations.Rmd | 12 30 files changed, 679 insertions(+), 735 deletions(-)
Title: Project Environments
Description: A dependency management toolkit for R. Using 'renv', you can create
and manage project-local R libraries, save the state of these libraries to
a 'lockfile', and later restore your library as required. Together, these
tools can help make your projects more isolated, portable, and reproducible.
Author: Kevin Ushey [aut, cre],
RStudio [cph]
Maintainer: Kevin Ushey <kevin@rstudio.com>
Diff between renv versions 0.10.0 dated 2020-05-06 and 0.11.0 dated 2020-06-26
DESCRIPTION | 6 MD5 | 138 ++- NAMESPACE | 2 NEWS.md | 57 + R/addins.R |only R/available-packages.R | 18 R/bootstrap.R | 16 R/checkout.R |only R/cli.R |only R/config-defaults.R | 101 +- R/config.R | 46 - R/dependencies.R | 25 R/diagnostics.R | 138 ++- R/embed.R |only R/errors.R | 2 R/files.R | 63 + R/hash.R | 19 R/imports.R | 4 R/infrastructure.R | 6 R/install.R | 10 R/libpaths.R | 59 - R/load.R | 11 R/mran.R | 30 R/parse.R | 70 + R/paths.R | 4 R/pretty.R | 3 R/records.R | 5 R/remotes.R | 29 R/restart.R | 6 R/restore.R | 4 R/retrieve.R | 19 R/roxygen.R | 4 R/rspm.R | 75 +- R/session.R |only R/snapshot.R | 62 + R/update.R | 29 R/utils.R | 23 build/vignette.rds |binary inst/bin |only inst/config.yml | 10 inst/doc/ci.html | 434 ++++++------ inst/doc/collaborating.html | 396 ++++++----- inst/doc/docker.html | 599 +++++++++------- inst/doc/faq.html | 558 ++++++++------- inst/doc/local-sources.html | 536 ++++++++------- inst/doc/lockfile.html | 360 ++++++---- inst/doc/mran.html | 510 ++++++++------ inst/doc/packages.html | 413 ++++++----- inst/doc/python.html | 393 ++++++----- inst/doc/renv.Rmd | 49 + inst/doc/renv.html | 1105 ++++++++++++++----------------- inst/resources/WELCOME | 17 inst/resources/activate.R | 20 man/checkout.Rd |only man/config.Rd | 6 man/embed.Rd |only man/paths.Rd | 1 man/update.Rd | 17 tests/testthat/packages/unixonly |only tests/testthat/packages/windowsonly |only tests/testthat/test-activate.R | 14 tests/testthat/test-available-packages.R | 16 tests/testthat/test-config.R | 25 tests/testthat/test-dependencies.R | 15 tests/testthat/test-diagnostics.R | 1 tests/testthat/test-files.R | 13 tests/testthat/test-parse.R |only tests/testthat/test-python.R | 2 tests/testthat/test-remotes.R | 10 tests/testthat/test-repos.R | 6 tests/testthat/test-restore.R | 35 tests/testthat/test-rspm.R | 8 tests/testthat/test-snapshot.R | 47 + tests/testthat/test-utils.R | 14 vignettes/renv.Rmd | 49 + 75 files changed, 4011 insertions(+), 2752 deletions(-)
Title: Flexible Procedures for Clustering
Description: Various methods for clustering and cluster validation.
Fixed point clustering. Linear regression clustering. Clustering by
merging Gaussian mixture components. Symmetric
and asymmetric discriminant projections for visualisation of the
separation of groupings. Cluster validation statistics
for distance based clustering including corrected Rand index.
Standardisation of cluster validation statistics by random clusterings and
comparison between many clustering methods and numbers of clusters based on
this.
Cluster-wise cluster stability assessment. Methods for estimation of
the number of clusters: Calinski-Harabasz, Tibshirani and Walther's
prediction strength, Fang and Wang's bootstrap stability.
Gaussian/multinomial mixture fitting for mixed
continuous/categorical variables. Variable-wise statistics for cluster
interpretation. DBSCAN clustering. Interface functions for many
clustering methods implemented in R, including estimating the number of
clusters with kmeans, pam and clara. Modality diagnosis for Gaussian
mixtures. For an overview see package?fpc.
Author: Christian Hennig <christian.hennig@unibo.it>
Maintainer: Christian Hennig <christian.hennig@unibo.it>
Diff between fpc versions 2.2-6 dated 2020-06-24 and 2.2-7 dated 2020-06-26
DESCRIPTION | 8 +- MD5 | 6 - man/clusterbenchstats.Rd | 2 tests/Examples/fpc-Ex.Rout.save | 156 +--------------------------------------- 4 files changed, 16 insertions(+), 156 deletions(-)
Title: Familiarity with Dataframes Before Data Manipulation
Description: Real life data is muddy, fuzzy and unpredictable. This makes data manipulations tedious and bringing the data to right shape alone is a major chunk of work. Functions in this package help us get an understanding of dataframes to dramatically reduces data coding time.
Author: Ashrith Reddy [aut, cre]
Maintainer: Ashrith Reddy <ashrithssreddy@gmail.com>
Diff between dataframeexplorer versions 0.1.6 dated 2020-04-17 and 0.1.7 dated 2020-06-26
DESCRIPTION | 11 ++++++----- MD5 | 8 ++++---- R/glimpse.R | 7 ++++--- R/level_of_dataset.R | 20 +++++++++++++------- README.md | 7 +++++-- 5 files changed, 32 insertions(+), 21 deletions(-)
More information about dataframeexplorer at CRAN
Permanent link
Title: Enhanced Regression Nomogram Plot
Description: A function to plot a regression nomogram of regression
objects. Covariate distributions are superimposed on nomogram scales and the plot
can be animated to allow on-the-fly changes to distribution representation and to
enable outcome calculation.
Author: Roger Marshall [aut, cre]
Maintainer: Roger Marshall <rj.marshall@auckland.ac.nz>
Diff between regplot versions 1.0 dated 2020-01-30 and 1.1 dated 2020-06-26
DESCRIPTION | 8 - MD5 | 10 - NAMESPACE | 2 R/regplot.R | 377 +++++++++++++++++++++++++++++++------------------- R/regplot_functions.R | 215 +++++++++++++++++++++------- man/regplot.Rd | 27 +-- 6 files changed, 426 insertions(+), 213 deletions(-)
Title: Prioritization of Candidate Cancer Subtype Specific Drugs
Description: A systematic biology tool was developed to prioritize cancer subtype-specific drugs by integrating genetic perturbation, drug action, biological pathway, and cancer subtype.
The capabilities of this tool include inferring patient-specific subpathway activity profiles in the context of gene expression profiles with subtype labels, calculating differentially
expressed subpathways based on cultured human cells treated with drugs in the 'cMap' (connectivity map) database, prioritizing cancer subtype specific drugs according to drug-disease
reverse association score based on subpathway, and visualization of results (Castelo (2013) <doi:10.1186/1471-2105-14-7>; Han et al (2019) <doi:10.1093/bioinformatics/btz894>; Lamb and Justin (2006) <DOI:10.1126/science.1132939>).
Author: Xudong Han,
Junwei Han,
Chonghui Liu
Maintainer: Junwei Han <hanjunwei1981@163.com>
Diff between SubtypeDrug versions 0.1.0 dated 2020-05-16 and 0.1.1 dated 2020-06-26
DESCRIPTION | 6 - MD5 | 26 +++--- NAMESPACE | 1 R/OCSSD.R | 82 ++++++++++++++++----- R/plotDScoreHeatmap.R | 83 ++++++++++++---------- data/Disease_drugs.rda |binary data/Drugs_CID.rda |binary data/Subtype_drugs.rda |binary inst/doc/vignette.R | 10 +- inst/doc/vignette.Rmd | 65 +++++++++-------- inst/doc/vignette.html | 176 +++++++++++++++++++++++++---------------------- man/OCSSD.Rd | 30 ++++---- man/plotDScoreHeatmap.Rd | 35 +++++---- vignettes/vignette.Rmd | 65 +++++++++-------- 14 files changed, 339 insertions(+), 240 deletions(-)