Title: Alluvial Plots in 'ggplot2'
Description: Alluvial plots use variable-width ribbons and stacked bar plots to
represent multi-dimensional or repeated-measures data with categorical or
ordinal variables; see Riehmann, Hanfler, and Froehlich (2005)
<doi:10.1109/INFVIS.2005.1532152> and Rosvall and Bergstrom (2010)
<doi:10.1371/journal.pone.0008694>.
Alluvial plots are statistical graphics in the sense of Wilkinson (2006)
<doi:10.1007/0-387-28695-0>; they share elements with Sankey diagrams and
parallel sets plots but are uniquely determined from the data and a small
set of parameters. This package extends Wickham's (2010)
<doi:10.1198/jcgs.2009.07098> layered grammar of graphics to generate
alluvial plots from tidy data.
Author: Jason Cory Brunson [aut, cre]
Maintainer: Jason Cory Brunson <cornelioid@gmail.com>
Diff between ggalluvial versions 0.12.1 dated 2020-08-10 and 0.12.2 dated 2020-08-30
DESCRIPTION | 8 ++++---- MD5 | 22 +++++++++++----------- NEWS.md | 4 ++++ R/alluvial-data.r | 22 +++++++++++++++++----- R/stat-utils.r | 1 + inst/doc/ggalluvial.html | 22 +++++++++++----------- inst/doc/labels.html | 24 ++++++++++++------------ inst/doc/order-rectangles.html | 22 +++++++++++----------- inst/examples/ex-alluvial-data.r | 11 +++++++++-- inst/examples/ex-stat-alluvium.r | 11 +++++++++++ man/alluvial-data.Rd | 21 +++++++++++++++++---- man/stat_alluvium.Rd | 11 +++++++++++ 12 files changed, 119 insertions(+), 60 deletions(-)
Title: 'Rcpp' Bindings for the 'CCTZ' Library
Description: 'Rcpp' Access to the 'CCTZ' timezone library is provided. 'CCTZ' is
a C++ library for translating between absolute and civil times using the rules
of a time zone. The 'CCTZ' source code, released under the Apache 2.0 License,
is included in this package. See <https://github.com/google/cctz> for more
details.
Author: Dirk Eddelbuettel
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppCCTZ versions 0.2.8 dated 2020-08-04 and 0.2.9 dated 2020-08-30
ChangeLog | 34 +++++++++++++++++++++++++++++++++- DESCRIPTION | 8 ++++---- MD5 | 19 +++++++++++-------- R/RcppExports.R | 1 + README.md | 4 ++-- inst/NEWS.Rd | 6 ++++++ inst/include/RcppCCTZ_API.h |only inst/include/RcppCCTZ_types.h |only man/parseDatetime.Rd | 1 + src/RcppExports.cpp | 16 +--------------- src/RcppExports_snippet.h |only src/utilities.cpp | 5 +++-- 12 files changed, 62 insertions(+), 32 deletions(-)
Title: Assessment Models for Agriculture Soil Conditions and Crop
Suitability
Description: Soil assessment builds information for improved decision in soil management. It analyzes soil conditions with regard to agriculture
crop suitability requirements [such as those given by FAO <http://www.fao.org/land-water/databases-and-software/crop-information/en/>] soil fertility classes,
soil erosion models and soil salinity classification. Suitability requirements are for crops grouped into cereal crops, nuts, legumes, fruits, vegetables,
industrial crops, and root crops.
Author: Christian Thine Omuto
Maintainer: Christian Thine Omuto <thineomuto@yahoo.com>
Diff between soilassessment versions 0.1.1 dated 2020-01-10 and 0.2.1 dated 2020-08-30
soilassessment-0.1.1/soilassessment/R/pedoTrasnfer.R |only soilassessment-0.1.1/soilassessment/data/datalist |only soilassessment-0.2.1/soilassessment/DESCRIPTION | 16 - soilassessment-0.2.1/soilassessment/MD5 | 81 +++++----- soilassessment-0.2.1/soilassessment/NAMESPACE | 10 - soilassessment-0.2.1/soilassessment/R/CECSuit.R | 2 soilassessment-0.2.1/soilassessment/R/ECSuit.R | 2 soilassessment-0.2.1/soilassessment/R/ECconversion4.R |only soilassessment-0.2.1/soilassessment/R/NPPmodel.R |only soilassessment-0.2.1/soilassessment/R/RotCmoistcorrection.R |only soilassessment-0.2.1/soilassessment/R/RotCtempcorrection.R |only soilassessment-0.2.1/soilassessment/R/SOCSuit.R | 2 soilassessment-0.2.1/soilassessment/R/carbonTurnover.R |only soilassessment-0.2.1/soilassessment/R/carbonateSuit.R | 2 soilassessment-0.2.1/soilassessment/R/classnames.R | 7 soilassessment-0.2.1/soilassessment/R/pedoTransfer.R |only soilassessment-0.2.1/soilassessment/R/predUncertain.R | 40 ++-- soilassessment-0.2.1/soilassessment/R/saltRating.R | 7 soilassessment-0.2.1/soilassessment/R/stoneSuit.R | 23 +- soilassessment-0.2.1/soilassessment/R/textureSuit.R | 1 soilassessment-0.2.1/soilassessment/data/nutrient.RData |binary soilassessment-0.2.1/soilassessment/data/nutrindicator.RData |binary soilassessment-0.2.1/soilassessment/data/soil.RData |binary soilassessment-0.2.1/soilassessment/data/suitabinput.RData |binary soilassessment-0.2.1/soilassessment/data/textureinput.RData |binary soilassessment-0.2.1/soilassessment/man/ECSuit.Rd | 10 - soilassessment-0.2.1/soilassessment/man/ECconversion4.Rd |only soilassessment-0.2.1/soilassessment/man/NPPmodel.Rd |only soilassessment-0.2.1/soilassessment/man/RotCmoistcorrection.Rd |only soilassessment-0.2.1/soilassessment/man/RotCtempcorrection.Rd |only soilassessment-0.2.1/soilassessment/man/appendTextureclass.Rd | 4 soilassessment-0.2.1/soilassessment/man/carbonTurnover.Rd |only soilassessment-0.2.1/soilassessment/man/carbonateSuit.Rd | 2 soilassessment-0.2.1/soilassessment/man/depthSuit.Rd | 12 - soilassessment-0.2.1/soilassessment/man/drainageSuit.Rd | 4 soilassessment-0.2.1/soilassessment/man/nutrindicator.Rd | 2 soilassessment-0.2.1/soilassessment/man/pedoTransfer.Rd | 10 - soilassessment-0.2.1/soilassessment/man/predUncertain.Rd | 8 soilassessment-0.2.1/soilassessment/man/reclassifyMap.Rd | 8 soilassessment-0.2.1/soilassessment/man/regmodelSuit.Rd | 14 - soilassessment-0.2.1/soilassessment/man/saltRating.Rd | 4 soilassessment-0.2.1/soilassessment/man/saltSeverity.Rd | 1 soilassessment-0.2.1/soilassessment/man/slopeSuit.Rd | 8 soilassessment-0.2.1/soilassessment/man/sloplenFUN.Rd | 12 - soilassessment-0.2.1/soilassessment/man/soil.Rd | 2 soilassessment-0.2.1/soilassessment/man/suitabilityClass.Rd | 4 soilassessment-0.2.1/soilassessment/man/suitabinput.Rd | 7 soilassessment-0.2.1/soilassessment/man/textureinput.Rd | 2 48 files changed, 158 insertions(+), 149 deletions(-)
More information about soilassessment at CRAN
Permanent link
Title: USGS ScienceBase Tools
Description: Tools for interacting with U.S. Geological Survey ScienceBase
<https://www.sciencebase.gov> interfaces. ScienceBase is a data cataloging and
collaborative data management platform. Functions included for querying
ScienceBase, and creating and fetching datasets.
Author: David Blodgett [cre],
Tim Kern [aut],
Luke Winslow [aut],
Scott Chamberlain [aut],
Alison Appling [aut],
Jordan Read [aut]
Maintainer: David Blodgett <dblodgett@usgs.gov>
Diff between sbtools versions 1.1.11 dated 2020-04-20 and 1.1.12 dated 2020-08-30
DESCRIPTION | 8 - LICENSE.note | 232 +++++++++++++++--------------- MD5 | 258 ++++++++++++++++----------------- NAMESPACE | 143 +++++++++--------- NEWS.md | 138 +++++++++--------- R/AAA.R | 102 ++++++------- R/REST_helpers.R | 262 ++++++++++++++++++---------------- R/authenticate_sb.R | 132 ++++++++--------- R/current_session.R | 42 ++--- R/file_helpers.R | 24 +-- R/folder_create.R | 60 +++---- R/identifier_exists.R | 58 +++---- R/is_logged_in.R | 24 +-- R/item_append_files.R | 62 ++++---- R/item_create.R | 68 ++++---- R/item_exists.R | 60 +++---- R/item_file_download.R | 154 ++++++++++---------- R/item_get.R | 56 +++---- R/item_get_fields.R | 53 +++--- R/item_get_parent.R | 42 ++--- R/item_get_wfs.R | 168 +++++++++++----------- R/item_list_children.R | 78 +++++----- R/item_list_files.R | 172 +++++++++++----------- R/item_move.R | 58 +++---- R/item_rename_files.R | 82 +++++----- R/item_replace_files.R | 52 +++--- R/item_rm.R | 84 +++++------ R/item_rm_files.R | 88 +++++------ R/item_rm_recursive.R | 100 ++++++------- R/item_update.R | 70 ++++----- R/item_update_identifier.R | 180 +++++++++++------------ R/item_upload_create.R | 70 ++++----- R/item_upsert.R | 86 +++++------ R/items_create.R | 156 ++++++++++---------- R/items_rm.R | 76 +++++----- R/items_update.R | 108 +++++++------- R/items_upsert.R | 120 +++++++-------- R/query_item_identifier.R | 176 +++++++++++------------ R/query_item_in_folder.R | 44 ++--- R/query_items.R | 268 +++++++++++++++++------------------ R/query_sb.R | 296 +++++++++++++++++++-------------------- R/query_sb_datatype.R | 122 ++++++++-------- R/query_sb_date.R | 92 ++++++------ R/query_sb_doi.R | 70 ++++----- R/query_sb_spatial.R | 120 +++++++-------- R/query_sb_text.R | 56 +++---- R/sb_item.R | 165 +++++++++++---------- R/sb_ping.R | 48 +++--- R/sbtools-package.R | 76 +++++----- R/session_age.R | 78 +++++----- R/session_age_reset.R | 48 +++--- R/session_authorized.R | 8 - R/session_details.R | 40 ++--- R/session_logout.R | 40 ++--- R/session_renew.R | 116 +++++++-------- R/session_set.R | 14 - R/session_validate.R | 100 ++++++------- R/set_endpoint.R | 96 ++++++------ R/user_id.R | 42 ++--- README.md | 224 ++++++++++++++--------------- demo/00Index | 4 demo/figure_fault_code.R | 48 +++--- demo/figure_map_code.R | 36 ++-- inst/CITATION | 28 +-- inst/examples/books.json | 102 ++++++------- inst/examples/data.csv | 20 +- inst/examples/species.json | 74 ++++----- man/authenticate_sb.Rd | 36 ++-- man/current_session.Rd | 40 ++--- man/folder_create.Rd | 68 ++++---- man/identifier_exists.Rd | 70 ++++----- man/is_logged_in.Rd | 48 +++--- man/item_append_files.Rd | 64 ++++---- man/item_create.Rd | 90 +++++------ man/item_exists.Rd | 62 ++++---- man/item_file_download.Rd | 120 +++++++-------- man/item_get.Rd | 78 +++++----- man/item_get_fields.Rd | 76 +++++----- man/item_get_parent.Rd | 62 ++++---- man/item_get_wfs.Rd | 56 +++---- man/item_list_children.Rd | 88 +++++------ man/item_list_files.Rd | 104 ++++++------- man/item_move.Rd | 86 +++++------ man/item_rename_files.Rd | 70 ++++----- man/item_replace_files.Rd | 60 +++---- man/item_rm.Rd | 88 +++++------ man/item_rm_files.Rd | 76 +++++----- man/item_rm_recursive.Rd | 80 +++++----- man/item_update.Rd | 66 ++++---- man/item_update_identifier.Rd | 92 ++++++------ man/item_upload_create.Rd | 68 ++++---- man/item_upsert.Rd | 98 ++++++------ man/items_create.Rd | 142 +++++++++--------- man/items_rm.Rd | 76 +++++----- man/items_update.Rd | 78 +++++----- man/items_upsert.Rd | 106 ++++++------- man/query_item_identifier.Rd | 112 +++++++------- man/query_item_in_folder.Rd | 66 ++++---- man/query_items.Rd | 284 ++++++++++++++++++------------------- man/query_sb.Rd | 194 ++++++++++++------------- man/query_sb_datatype.Rd | 72 ++++----- man/query_sb_date.Rd | 96 ++++++------ man/query_sb_doi.Rd | 68 ++++---- man/query_sb_spatial.Rd | 96 ++++++------ man/query_sb_text.Rd | 72 ++++----- man/readPassword.Rd | 24 +-- man/sb_datatypes.Rd | 50 +++--- man/sb_ping.Rd | 46 +++--- man/sbitem.Rd | 89 +++++------ man/sbtools-package.Rd | 86 +++++------ man/sbtools_DELETE.Rd | 42 ++--- man/sbtools_GET.Rd | 42 ++--- man/sbtools_POST.Rd | 46 +++--- man/sbtools_PUT.Rd | 46 +++--- man/session_age.Rd | 62 ++++---- man/session_age_reset.Rd | 30 +-- man/session_details.Rd | 48 +++--- man/session_expired.Rd | 42 ++--- man/session_logout.Rd | 48 +++--- man/session_renew.Rd | 80 +++++----- man/session_set.Rd | 30 +-- man/session_validate.Rd | 70 ++++----- man/set_endpoint.Rd | 68 ++++---- man/set_expiration.Rd | 30 +-- man/user_id.Rd | 48 +++--- tests/testthat.R | 2 tests/testthat/test-REST.R | 77 +++++----- tests/testthat/test-auth.R | 226 ++++++++++++++--------------- tests/testthat/test-eg.R | 32 ++-- tests/testthat/test-expiration.R | 62 ++++---- 130 files changed, 5581 insertions(+), 5530 deletions(-)
Title: Functions for Analyzing and Plotting Estuary Monitoring Data
Description: Tools for performing routine analysis and plotting tasks with environmental
data from the System Wide Monitoring Program of the National Estuarine
Research Reserve System <http://cdmo.baruch.sc.edu/>. This package builds
on the functionality of the SWMPr package <https://cran.r-project.org/package=SWMPr>,
which is used to retrieve and organize the data. The combined set of tools
address common challenges associated with continuous time series data
for environmental decision making, and are intended for use in annual reporting activities.
References:
Beck, Marcus W. (2016) <ISSN 2073-4859><https://journal.r-project.org/archive/2016-1/beck.pdf>
Rudis, Bob (2014) <https://rud.is/b/2014/11/16/moving-the-earth-well-alaska-hawaii-with-r/>.
United States Environmental Protection Agency (2015) <https://cfpub.epa.gov/si/si_public_record_Report.cfm?Lab=OWOW&dirEntryId=327030>.
United States Environmental Protection Agency (2012) <http://citeseerx.ist.psu.edu/viewdoc/download?doi=10.1.1.646.1973&rep=rep1&type=pdf>.
Author: Julie Padilla [aut, ctb],
Marcus Beck [ctb],
Kimberly Cressman [ctb],
Dave Eslinger [cre, ctb],
Bob Rudis [ctb]
Maintainer: Dave Eslinger <dave.eslinger@noaa.gov>
Diff between SWMPrExtension versions 1.1.5 dated 2020-05-30 and 1.1.6 dated 2020-08-30
SWMPrExtension-1.1.5/SWMPrExtension/data/datalist |only SWMPrExtension-1.1.6/SWMPrExtension/DESCRIPTION | 12 SWMPrExtension-1.1.6/SWMPrExtension/MD5 | 135 ++-- SWMPrExtension-1.1.6/SWMPrExtension/NEWS.md | 13 SWMPrExtension-1.1.6/SWMPrExtension/R/annual_range.R | 6 SWMPrExtension-1.1.6/SWMPrExtension/R/get_site_coordinates.R | 2 SWMPrExtension-1.1.6/SWMPrExtension/R/historical_daily_range.R | 15 SWMPrExtension-1.1.6/SWMPrExtension/R/historical_range.R | 24 SWMPrExtension-1.1.6/SWMPrExtension/R/seasonal_barplot.R | 15 SWMPrExtension-1.1.6/SWMPrExtension/R/seasonal_boxplot.R | 32 - SWMPrExtension-1.1.6/SWMPrExtension/R/seasonal_dot.R | 12 SWMPrExtension-1.1.6/SWMPrExtension/R/sk_seasonal.R | 2 SWMPrExtension-1.1.6/SWMPrExtension/R/threshold_criteria_plot.R | 14 SWMPrExtension-1.1.6/SWMPrExtension/R/threshold_identification.R | 35 - SWMPrExtension-1.1.6/SWMPrExtension/R/threshold_percentile_plot.R | 21 SWMPrExtension-1.1.6/SWMPrExtension/R/threshold_summary.R | 102 ++- SWMPrExtension-1.1.6/SWMPrExtension/data/cbm_spatial.rda |binary SWMPrExtension-1.1.6/SWMPrExtension/data/elk_spatial.rda |binary SWMPrExtension-1.1.6/SWMPrExtension/data/us_laea.rda |binary SWMPrExtension-1.1.6/SWMPrExtension/man/annual_range.Rd | 166 ++--- SWMPrExtension-1.1.6/SWMPrExtension/man/assign_season.Rd | 146 ++-- SWMPrExtension-1.1.6/SWMPrExtension/man/cbm_spatial.Rd | 44 - SWMPrExtension-1.1.6/SWMPrExtension/man/create_sk_flextable_list.Rd | 130 ++-- SWMPrExtension-1.1.6/SWMPrExtension/man/create_sk_national_ft_reserves.Rd | 76 +- SWMPrExtension-1.1.6/SWMPrExtension/man/create_sk_national_ft_results.Rd | 82 +- SWMPrExtension-1.1.6/SWMPrExtension/man/elk_spatial.Rd | 44 - SWMPrExtension-1.1.6/SWMPrExtension/man/elknmnut.Rd | 44 - SWMPrExtension-1.1.6/SWMPrExtension/man/elksmwq.Rd | 44 - SWMPrExtension-1.1.6/SWMPrExtension/man/ft_col_names.Rd | 48 - SWMPrExtension-1.1.6/SWMPrExtension/man/generate_results_table.Rd | 56 - SWMPrExtension-1.1.6/SWMPrExtension/man/generate_station_table.Rd | 52 - SWMPrExtension-1.1.6/SWMPrExtension/man/geographic_unique_stations.Rd | 62 +- SWMPrExtension-1.1.6/SWMPrExtension/man/get_reserve.Rd | 48 - SWMPrExtension-1.1.6/SWMPrExtension/man/get_shp_name.Rd | 48 - SWMPrExtension-1.1.6/SWMPrExtension/man/get_site_code.Rd | 48 - SWMPrExtension-1.1.6/SWMPrExtension/man/get_site_coordinates.Rd | 52 - SWMPrExtension-1.1.6/SWMPrExtension/man/get_sites.Rd | 70 +- SWMPrExtension-1.1.6/SWMPrExtension/man/historical_daily_range.Rd | 182 ++--- SWMPrExtension-1.1.6/SWMPrExtension/man/historical_range.Rd | 180 ++--- SWMPrExtension-1.1.6/SWMPrExtension/man/import_local_nut.Rd | 84 +- SWMPrExtension-1.1.6/SWMPrExtension/man/lm_p_labs.Rd | 54 - SWMPrExtension-1.1.6/SWMPrExtension/man/load_shp_file.Rd | 52 - SWMPrExtension-1.1.6/SWMPrExtension/man/national_sk_map.Rd | 116 +-- SWMPrExtension-1.1.6/SWMPrExtension/man/raw_boxplot.Rd | 152 ++-- SWMPrExtension-1.1.6/SWMPrExtension/man/remove_inf_and_nan.Rd | 48 - SWMPrExtension-1.1.6/SWMPrExtension/man/res_custom_map.Rd | 150 ++-- SWMPrExtension-1.1.6/SWMPrExtension/man/res_custom_sk_map.Rd | 142 ++-- SWMPrExtension-1.1.6/SWMPrExtension/man/res_local_map.Rd | 182 ++--- SWMPrExtension-1.1.6/SWMPrExtension/man/res_national_map.Rd | 120 +-- SWMPrExtension-1.1.6/SWMPrExtension/man/res_sk_map.Rd | 182 ++--- SWMPrExtension-1.1.6/SWMPrExtension/man/reserve_locs.Rd | 52 - SWMPrExtension-1.1.6/SWMPrExtension/man/sampling_stations.Rd | 44 - SWMPrExtension-1.1.6/SWMPrExtension/man/seasonal_barplot.Rd | 201 +++--- SWMPrExtension-1.1.6/SWMPrExtension/man/seasonal_boxplot.Rd | 210 +++--- SWMPrExtension-1.1.6/SWMPrExtension/man/seasonal_dot.Rd | 226 +++---- SWMPrExtension-1.1.6/SWMPrExtension/man/set_date_break_labs.Rd | 54 - SWMPrExtension-1.1.6/SWMPrExtension/man/set_date_breaks.Rd | 54 - SWMPrExtension-1.1.6/SWMPrExtension/man/sk_seasonal.Rd | 130 ++-- SWMPrExtension-1.1.6/SWMPrExtension/man/sk_tidy.Rd | 64 +- SWMPrExtension-1.1.6/SWMPrExtension/man/std_param_check.Rd | 66 +- SWMPrExtension-1.1.6/SWMPrExtension/man/summarise_handoff_files.Rd | 56 - SWMPrExtension-1.1.6/SWMPrExtension/man/threshold_criteria_plot.Rd | 310 +++++----- SWMPrExtension-1.1.6/SWMPrExtension/man/threshold_identification.Rd | 180 ++--- SWMPrExtension-1.1.6/SWMPrExtension/man/threshold_percentile_plot.Rd | 215 +++--- SWMPrExtension-1.1.6/SWMPrExtension/man/threshold_summary.Rd | 225 +++---- SWMPrExtension-1.1.6/SWMPrExtension/man/title_labeler.Rd | 56 - SWMPrExtension-1.1.6/SWMPrExtension/man/us_laea.Rd | 44 - SWMPrExtension-1.1.6/SWMPrExtension/man/y_count_labeler.Rd | 86 +- SWMPrExtension-1.1.6/SWMPrExtension/man/y_labeler.Rd | 64 +- 69 files changed, 2903 insertions(+), 2778 deletions(-)
More information about SWMPrExtension at CRAN
Permanent link
Title: Credit Risk Scorecard
Description: The `scorecard` package makes the development of credit risk scorecard
easier and efficient by providing functions for some common tasks,
such as data partition, variable selection, woe binning, scorecard scaling,
performance evaluation and report generation. These functions can also used
in the development of machine learning models.
The references including:
1. Refaat, M. (2011, ISBN: 9781447511199). Credit Risk Scorecard:
Development and Implementation Using SAS.
2. Siddiqi, N. (2006, ISBN: 9780471754510). Credit risk scorecards.
Developing and Implementing Intelligent Credit Scoring.
Author: Shichen Xie [aut, cre]
Maintainer: Shichen Xie <xie@shichen.name>
Diff between scorecard versions 0.3.0 dated 2020-04-10 and 0.3.1 dated 2020-08-30
scorecard-0.3.0/scorecard/R/refs.R |only scorecard-0.3.1/scorecard/DESCRIPTION | 11 - scorecard-0.3.1/scorecard/MD5 | 41 ++--- scorecard-0.3.1/scorecard/NEWS.md | 7 scorecard-0.3.1/scorecard/R/condition_fun.R | 24 +-- scorecard-0.3.1/scorecard/R/germancredit.R | 74 --------- scorecard-0.3.1/scorecard/R/perf.R | 194 +++++++++++++++++-------- scorecard-0.3.1/scorecard/R/scorecard.R | 20 +- scorecard-0.3.1/scorecard/R/woebin.R | 25 ++- scorecard-0.3.1/scorecard/build/vignette.rds |binary scorecard-0.3.1/scorecard/inst/doc/demo.R | 2 scorecard-0.3.1/scorecard/inst/doc/demo.Rmd | 155 +++++++++++++------ scorecard-0.3.1/scorecard/inst/doc/demo.html | 183 ++++++++++++++--------- scorecard-0.3.1/scorecard/inst/extdata |only scorecard-0.3.1/scorecard/man/gains_table.Rd | 4 scorecard-0.3.1/scorecard/man/germancredit.Rd | 2 scorecard-0.3.1/scorecard/man/perf_eva.Rd | 9 - scorecard-0.3.1/scorecard/man/scorecard.Rd | 6 scorecard-0.3.1/scorecard/man/scorecard2.Rd | 8 - scorecard-0.3.1/scorecard/man/scorecard_ply.Rd | 2 scorecard-0.3.1/scorecard/man/woebin_plot.Rd | 8 + scorecard-0.3.1/scorecard/vignettes/demo.Rmd | 155 +++++++++++++------ 22 files changed, 567 insertions(+), 363 deletions(-)
Title: Small Area Estimation with Measurement Error
Description: A set of functions and datasets implementation of small area estimation when auxiliary variable is measured with error. These functions provide a empirical best linear unbiased prediction (EBLUP) estimator and mean squared error (MSE) estimator of the EBLUP. These models were developed by Ybarra and Lohr (2008) <doi:10.1093/biomet/asn048>.
Author: Muhammad Rifqi Mubarak [aut, cre],
Azka Ubaidillah [aut]
Maintainer: Muhammad Rifqi Mubarak <16.9304@stis.ac.id>
Diff between saeME versions 1.0.1 dated 2020-03-20 and 1.2 dated 2020-08-30
saeME-1.0.1/saeME/man/saeME-package.Rd |only saeME-1.2/saeME/DESCRIPTION | 10 +++++----- saeME-1.2/saeME/MD5 | 26 ++++++++++++++++---------- saeME-1.2/saeME/NAMESPACE | 6 ++++-- saeME-1.2/saeME/R/FHme.R | 8 +++++--- saeME-1.2/saeME/R/FHme_nonsamples.R |only saeME-1.2/saeME/R/mse_FHme.R | 7 ++++++- saeME-1.2/saeME/R/nonsample.R |only saeME-1.2/saeME/R/saeME.R | 12 +++++++----- saeME-1.2/saeME/README.md |only saeME-1.2/saeME/data/nonsample.rda |only saeME-1.2/saeME/man/FHme.Rd | 1 + saeME-1.2/saeME/man/FHme_nonsamples.Rd |only saeME-1.2/saeME/man/dataME.Rd | 6 ++++-- saeME-1.2/saeME/man/datamix.Rd | 6 ++++-- saeME-1.2/saeME/man/mse_FHme.Rd | 1 + saeME-1.2/saeME/man/nonsample.Rd |only saeME-1.2/saeME/man/saeME.Rd |only 18 files changed, 53 insertions(+), 30 deletions(-)
Title: Rcpp Bindings for Sequential Monte Carlo
Description: R access to the Sequential Monte Carlo Template Classes
by Johansen <doi:10.18637/jss.v030.i06> is provided. At present, four
additional examples have been added, and the first example from the JSS
paper has been extended. Further integration and extensions are planned.
Author: Dirk Eddelbuettel, Adam M. Johansen and Leah F. South
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppSMC versions 0.2.1 dated 2018-03-18 and 0.2.2 dated 2020-08-30
ChangeLog | 34 ++++++++++++++++++++++++++++++++++ DESCRIPTION | 8 ++++---- MD5 | 20 ++++++++++---------- R/bspfGaussianOptimal.R | 15 ++++++--------- README.md | 20 ++++++++++++++++---- inst/NEWS.Rd | 34 +++++++++++++++++++++------------- inst/include/moveset.h | 4 ++-- inst/include/pflineart.h | 4 ++-- inst/include/sampler.h | 1 + man/LinReg.Rd | 5 ----- man/pfLineartBS.Rd | 10 +++++----- 11 files changed, 101 insertions(+), 54 deletions(-)
Title: 'ROI' Plug-in 'GLPK'
Description: Enhances the 'R' Optimization Infrastructure ('ROI') package by registering
the free 'GLPK' solver. It allows for solving mixed integer linear programming ('MILP')
problems as well as all variants/combinations of 'LP', 'IP'.
Author: Stefan Theussl [aut, cre]
Maintainer: Stefan Theussl <Stefan.Theussl@R-Project.org>
Diff between ROI.plugin.glpk versions 0.3-0 dated 2017-10-20 and 1.0-0 dated 2020-08-30
DESCRIPTION | 9 +++++---- MD5 | 4 ++-- tests/test_glpk.Rout.save | 21 ++++++++++++++++++--- 3 files changed, 25 insertions(+), 9 deletions(-)
More information about ROI.plugin.glpk at CRAN
Permanent link
Title: 'ECOS' Plugin for the 'R' Optimization Infrastructure
Description: Enhances the 'R' Optimization Infrastructure ('ROI') package
with the Embedded Conic Solver ('ECOS') for solving conic optimization problems.
Author: Florian Schwendinger [aut, cre]
Maintainer: Florian Schwendinger <FlorianSchwendinger@gmx.at>
Diff between ROI.plugin.ecos versions 0.3-1 dated 2018-10-29 and 1.0-0 dated 2020-08-30
DESCRIPTION | 11 ++++++----- MD5 | 6 +++--- R/plugin.R | 13 +++++++------ man/Example_02.Rd | 5 ++--- 4 files changed, 18 insertions(+), 17 deletions(-)
More information about ROI.plugin.ecos at CRAN
Permanent link
Title: A S3 Class for Vectors of 64bit Integers
Description: Package 'bit64' provides serializable S3 atomic 64bit (signed) integers.
These are useful for handling database keys and exact counting in +-2^63.
WARNING: do not use them as replacement for 32bit integers, integer64 are not
supported for subscripting by R-core and they have different semantics when
combined with double, e.g. integer64 + double => integer64.
Class integer64 can be used in vectors, matrices, arrays and data.frames.
Methods are available for coercion from and to logicals, integers, doubles,
characters and factors as well as many elementwise and summary functions.
Many fast algorithmic operations such as 'match' and 'order' support inter-
active data exploration and manipulation and optionally leverage caching.
Author: Jens Oehlschlägel [aut, cre], Leonardo Silvestri [ctb]
Maintainer: Jens Oehlschlägel <Jens.Oehlschlaegel@truecluster.com>
Diff between bit64 versions 4.0.4 dated 2020-08-28 and 4.0.5 dated 2020-08-30
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NEWS | 10 ++++++++++ R/zzz.R | 11 +++++++++++ src/Makevars | 4 +++- 5 files changed, 32 insertions(+), 9 deletions(-)
Title: Multi-Species sIZE Spectrum Modelling in R
Description: A set of classes and methods to set up and run multi-species, trait
based and community size spectrum ecological models, focused on the marine
environment.
Author: Gustav Delius [cre, aut, cph] (<https://orcid.org/0000-0003-4092-8228>),
Finlay Scott [aut, cph],
Julia Blanchard [aut, cph] (<https://orcid.org/0000-0003-0532-4824>),
Ken Andersen [aut, cph] (<https://orcid.org/0000-0002-8478-3430>),
Richard Southwell [ctb, cph]
Maintainer: Gustav Delius <gustav.delius@york.ac.uk>
Diff between mizer versions 2.0.3 dated 2020-07-28 and 2.0.4 dated 2020-08-30
mizer-2.0.3/mizer/man/validate_effort_vector.Rd |only mizer-2.0.3/mizer/tests/testthat/test-MizerParams.R |only mizer-2.0.3/mizer/tests/testthat/test-MizerSim.R |only mizer-2.0.3/mizer/tests/testthat/test-selectivity.R |only mizer-2.0.3/mizer/tests/testthat/test-setParams.R |only mizer-2.0.4/mizer/DESCRIPTION | 21 mizer-2.0.4/mizer/MD5 | 230 +++--- mizer-2.0.4/mizer/NAMESPACE | 8 mizer-2.0.4/mizer/NEWS.md | 59 + mizer-2.0.4/mizer/R/MizerParams-class.R | 101 ++ mizer-2.0.4/mizer/R/extension.R | 1 mizer-2.0.4/mizer/R/get_initial_n.R |only mizer-2.0.4/mizer/R/mizer-package.R | 2 mizer-2.0.4/mizer/R/newMultispeciesParams.R | 55 - mizer-2.0.4/mizer/R/plots.R | 21 mizer-2.0.4/mizer/R/pred_kernel_funcs.R | 6 mizer-2.0.4/mizer/R/project.R | 250 ++----- mizer-2.0.4/mizer/R/project_methods.R | 355 +++++----- mizer-2.0.4/mizer/R/rate_functions.R | 202 +++-- mizer-2.0.4/mizer/R/resource_dynamics.R | 20 mizer-2.0.4/mizer/R/setBevertonHolt.R |only mizer-2.0.4/mizer/R/setExtMort.R | 10 mizer-2.0.4/mizer/R/setFishing.R | 237 ++++-- mizer-2.0.4/mizer/R/setInitialValues.R | 6 mizer-2.0.4/mizer/R/setInteraction.R | 2 mizer-2.0.4/mizer/R/setMaxIntakeRate.R | 9 mizer-2.0.4/mizer/R/setMetabolicRate.R | 10 mizer-2.0.4/mizer/R/setPredKernel.R | 19 mizer-2.0.4/mizer/R/setReproduction.R | 116 ++- mizer-2.0.4/mizer/R/setResource.R | 33 mizer-2.0.4/mizer/R/setSearchVolume.R | 9 mizer-2.0.4/mizer/R/species_params.R | 89 ++ mizer-2.0.4/mizer/R/steady.R | 73 +- mizer-2.0.4/mizer/R/summary_methods.R | 33 mizer-2.0.4/mizer/R/upgrade.R | 14 mizer-2.0.4/mizer/R/wrapper_functions.R | 73 -- mizer-2.0.4/mizer/README.md | 4 mizer-2.0.4/mizer/data/NS_params.RData |binary mizer-2.0.4/mizer/man/BevertonHoltRDD.Rd | 18 mizer-2.0.4/mizer/man/RickerRDD.Rd | 10 mizer-2.0.4/mizer/man/SheperdRDD.Rd | 10 mizer-2.0.4/mizer/man/constantRDD.Rd | 4 mizer-2.0.4/mizer/man/emptyParams.Rd | 11 mizer-2.0.4/mizer/man/gear_params.Rd |only mizer-2.0.4/mizer/man/getEGrowth.Rd | 1 mizer-2.0.4/mizer/man/getERepro.Rd | 1 mizer-2.0.4/mizer/man/getEReproAndGrowth.Rd | 1 mizer-2.0.4/mizer/man/getESpawning.Rd | 1 mizer-2.0.4/mizer/man/getEncounter.Rd | 5 mizer-2.0.4/mizer/man/getFMort.Rd | 32 mizer-2.0.4/mizer/man/getFMortGear.Rd | 1 mizer-2.0.4/mizer/man/getFeedingLevel.Rd | 1 mizer-2.0.4/mizer/man/getM2.Rd | 1 mizer-2.0.4/mizer/man/getM2Background.Rd | 3 mizer-2.0.4/mizer/man/getMort.Rd | 1 mizer-2.0.4/mizer/man/getPredMort.Rd | 1 mizer-2.0.4/mizer/man/getPredRate.Rd | 1 mizer-2.0.4/mizer/man/getRDD.Rd | 1 mizer-2.0.4/mizer/man/getRDI.Rd | 31 mizer-2.0.4/mizer/man/getRates.Rd |only mizer-2.0.4/mizer/man/getResourceMort.Rd | 3 mizer-2.0.4/mizer/man/getZ.Rd | 1 mizer-2.0.4/mizer/man/get_gamma_default.Rd | 6 mizer-2.0.4/mizer/man/get_h_default.Rd | 6 mizer-2.0.4/mizer/man/get_initial_n.Rd | 2 mizer-2.0.4/mizer/man/get_ks_default.Rd | 10 mizer-2.0.4/mizer/man/mizer-package.Rd | 4 mizer-2.0.4/mizer/man/mizerEncounter.Rd | 4 mizer-2.0.4/mizer/man/mizerFMort.Rd | 19 mizer-2.0.4/mizer/man/mizerFeedingLevel.Rd | 4 mizer-2.0.4/mizer/man/mizerRDI.Rd | 15 mizer-2.0.4/mizer/man/mizerRates.Rd | 8 mizer-2.0.4/mizer/man/newMultispeciesParams.Rd | 52 - mizer-2.0.4/mizer/man/noRDD.Rd | 4 mizer-2.0.4/mizer/man/project.Rd | 9 mizer-2.0.4/mizer/man/project_simple.Rd | 4 mizer-2.0.4/mizer/man/resource_constant.Rd | 2 mizer-2.0.4/mizer/man/resource_params.Rd |only mizer-2.0.4/mizer/man/resource_semichemostat.Rd | 19 mizer-2.0.4/mizer/man/retune_erepro.Rd | 5 mizer-2.0.4/mizer/man/setBevertonHolt.Rd |only mizer-2.0.4/mizer/man/setExtMort.Rd | 7 mizer-2.0.4/mizer/man/setFishing.Rd | 21 mizer-2.0.4/mizer/man/setInitialValues.Rd | 3 mizer-2.0.4/mizer/man/setInteraction.Rd | 5 mizer-2.0.4/mizer/man/setMaxIntakeRate.Rd | 10 mizer-2.0.4/mizer/man/setMetabolicRate.Rd | 11 mizer-2.0.4/mizer/man/setParams.Rd | 98 +- mizer-2.0.4/mizer/man/setPredKernel.Rd | 18 mizer-2.0.4/mizer/man/setReproduction.Rd | 61 + mizer-2.0.4/mizer/man/setResource.Rd | 20 mizer-2.0.4/mizer/man/setRmax.Rd | 15 mizer-2.0.4/mizer/man/setSearchVolume.Rd | 10 mizer-2.0.4/mizer/man/species_params.Rd |only mizer-2.0.4/mizer/man/steady.Rd | 3 mizer-2.0.4/mizer/man/upgradeParams.Rd | 3 mizer-2.0.4/mizer/man/validEffortVector.Rd |only mizer-2.0.4/mizer/man/validGearParams.Rd | 25 mizer-2.0.4/mizer/man/validParams.Rd |only mizer-2.0.4/mizer/man/valid_species_arg.Rd |only mizer-2.0.4/mizer/tests/testthat/Rplots.pdf |binary mizer-2.0.4/mizer/tests/testthat/test-MizerParams-class.R |only mizer-2.0.4/mizer/tests/testthat/test-MizerSim-class.R |only mizer-2.0.4/mizer/tests/testthat/test-analytic_results.R | 3 mizer-2.0.4/mizer/tests/testthat/test-get_initial_n.R |only mizer-2.0.4/mizer/tests/testthat/test-newMultispeciesParams.R |only mizer-2.0.4/mizer/tests/testthat/test-pred_kernel_funcs.R |only mizer-2.0.4/mizer/tests/testthat/test-project.R | 136 --- mizer-2.0.4/mizer/tests/testthat/test-project_methods.R | 41 - mizer-2.0.4/mizer/tests/testthat/test-resource_dynamics.R |only mizer-2.0.4/mizer/tests/testthat/test-selectivity_funcs.R | 50 + mizer-2.0.4/mizer/tests/testthat/test-setBevertonHolt.R |only mizer-2.0.4/mizer/tests/testthat/test-setExtMort.R |only mizer-2.0.4/mizer/tests/testthat/test-setFishing.R | 87 ++ mizer-2.0.4/mizer/tests/testthat/test-setInteraction.R |only mizer-2.0.4/mizer/tests/testthat/test-setMaxIntakeRate.R |only mizer-2.0.4/mizer/tests/testthat/test-setMetabolicRate.R |only mizer-2.0.4/mizer/tests/testthat/test-setPredKernel.R |only mizer-2.0.4/mizer/tests/testthat/test-setReproduction.R |only mizer-2.0.4/mizer/tests/testthat/test-setResource.R | 5 mizer-2.0.4/mizer/tests/testthat/test-setSearchVolume.R | 25 mizer-2.0.4/mizer/tests/testthat/test-single_species.R | 3 mizer-2.0.4/mizer/tests/testthat/test-species_params.R | 66 + mizer-2.0.4/mizer/tests/testthat/test-steady.R | 10 mizer-2.0.4/mizer/tests/testthat/test-summary_methods.R | 13 mizer-2.0.4/mizer/tests/testthat/test-upgrade.R | 20 mizer-2.0.4/mizer/tests/testthat/test-wrapper_functions.R | 28 mizer-2.0.4/mizer/tests/testthat/values/getEGrowth |binary mizer-2.0.4/mizer/tests/testthat/values/getERepro |binary mizer-2.0.4/mizer/tests/testthat/values/getResourceMort |binary 130 files changed, 1856 insertions(+), 1321 deletions(-)
Title: Unconstrained Numerical Optimization Algorithms
Description: Optimization algorithms implemented in R, including
conjugate gradient (CG), Broyden-Fletcher-Goldfarb-Shanno (BFGS) and the
limited memory BFGS (L-BFGS) methods. Most internal parameters can be set
through the call interface. The solvers hold up quite well for
higher-dimensional problems.
Author: James Melville [aut, cre]
Maintainer: James Melville <jlmelville@gmail.com>
Diff between mize versions 0.2.3 dated 2019-12-05 and 0.2.4 dated 2020-08-30
DESCRIPTION | 12 MD5 | 47 +-- NAMESPACE | 2 NEWS.md | 18 + R/DONTCHECKMEIN.R |only R/mize.R | 18 - R/schmidt.R | 28 + R/wolfe.R | 15 - build/vignette.rds |binary inst/doc/convergence.Rmd | 4 inst/doc/convergence.html | 326 +++++++++++---------- inst/doc/mize.Rmd | 34 +- inst/doc/mize.html | 520 ++++++++++++++++++----------------- inst/doc/mmds.Rmd | 2 inst/doc/mmds.html | 266 +++++++++-------- inst/doc/stateful.Rmd | 6 inst/doc/stateful.html | 394 +++++++++++++------------- man/mize.Rd | 11 tests/testthat/helper_util.R | 6 tests/testthat/test_api.R | 15 + tests/testthat/test_minfunc_armijo.R | 48 +-- vignettes/convergence.Rmd | 4 vignettes/mize.Rmd | 34 +- vignettes/mmds.Rmd | 2 vignettes/stateful.Rmd | 6 25 files changed, 962 insertions(+), 856 deletions(-)
Title: Incremental Cost-Effectiveness Inference using Two Unbiased
Samples
Description: Given two unbiased samples of patient level data on cost and effectiveness
for a pair of treatments, make head-to-head treatment comparisons by (i) generating the
bivariate bootstrap resampling distribution of ICE uncertainty for a specified value of
the shadow price of health, lambda, (ii) form the wedge-shaped ICE confidence region with
specified confidence fraction within [0.50, 0.99] that is equivariant with respect to
changes in lambda, (iii) color the bootstrap outcomes within the above confidence wedge
with economic preferences from an ICE map with specified values of lambda, beta and gamma
parameters, (iv) display VAGR and ALICE acceptability curves, and (v) illustrate variation
in ICE preferences by displaying potentially non-linear indifference(iso-preference) curves
from an ICE map with specified values of lambda, beta and either gamma or eta parameters.
Author: Bob Obenchain
Maintainer: Bob Obenchain <wizbob@att.net>
Diff between ICEinfer versions 1.1 dated 2018-06-24 and 1.2 dated 2020-08-30
ICEinfer-1.1/ICEinfer/R/ICEinfer.R |only ICEinfer-1.2/ICEinfer/COPYING |only ICEinfer-1.2/ICEinfer/DESCRIPTION | 14 ++++++------ ICEinfer-1.2/ICEinfer/MD5 | 23 ++++++++++++++++---- ICEinfer-1.2/ICEinfer/NAMESPACE | 2 + ICEinfer-1.2/ICEinfer/R/ICEalice.R |only ICEinfer-1.2/ICEinfer/R/ICEcolor.R |only ICEinfer-1.2/ICEinfer/R/ICEepmap.R |only ICEinfer-1.2/ICEinfer/R/ICEpref.R |only ICEinfer-1.2/ICEinfer/R/ICEscale.R |only ICEinfer-1.2/ICEinfer/R/ICEuncrt.R |only ICEinfer-1.2/ICEinfer/R/ICEwedge.R |only ICEinfer-1.2/ICEinfer/R/internal.R |only ICEinfer-1.2/ICEinfer/data/sepsis.rda |only ICEinfer-1.2/ICEinfer/demo/00Index | 2 + ICEinfer-1.2/ICEinfer/demo/fluoxtca.R |only ICEinfer-1.2/ICEinfer/demo/sepsis.R |only ICEinfer-1.2/ICEinfer/man/ICEinfer-package.Rd | 29 ++++++++++++++++---------- ICEinfer-1.2/ICEinfer/man/ICEpref.Rd |only ICEinfer-1.2/ICEinfer/man/sepsis.Rd |only 20 files changed, 47 insertions(+), 23 deletions(-)
Title: Estimation and Hypothesis Testing for Threshold Regression
Description: Threshold regression models are also called two-phase regression, broken-stick regression, split-point regression, structural change models, and regression kink models, with and without interaction terms. Methods for both continuous and discontinuous threshold models are included, but the support for the former is much greater. This package is described in Fong, Huang, Gilbert and Permar (2017) <DOI:10.1186/s12859-017-1863-x>.
Author: Youyi Fong [cre],
Qianqian Chen [aut],
Shuangcheng Hua [aut],
Hyunju Son [aut],
Adam Elder [aut],
Tao Yang [aut],
Zonglin He [aut]
Maintainer: Youyi Fong <youyifong@gmail.com>
Diff between chngpt versions 2020.5-21 dated 2020-05-22 and 2020.8-29 dated 2020-08-30
ChangeLog | 54 ++ DESCRIPTION | 26 - MD5 | 33 - NAMESPACE | 13 R/chngptm.R | 662 ++++++++++++++++++++++++---------- R/sim.chngpt.R | 40 +- inst/doc/chngpt-vignette.pdf |binary inst/unitTests/runit.chngptm.linear.R | 83 +++- man/chngpt.test.Rd | 2 man/chngptm.Rd | 99 +++-- man/sim.chngpt.Rd | 32 + src/M10.cc | 12 src/M111.cc |only src/M20c.cc | 3 src/fastgrid2.cc | 217 ++++++----- src/fastgrid_helper.cc | 8 src/fastgrid_helper.h | 8 src/twoD.cc | 351 +++++++++--------- 18 files changed, 1119 insertions(+), 524 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-06-15 0.4.1
2019-09-12 0.4
2019-01-02 0.3
2018-05-06 0.2
2017-10-29 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-10-03 0.2.1
Title: Genome-Wide Structural Equation Modeling
Description: Melds genome-wide association tests with structural
equation modeling (SEM) using 'OpenMx'. This package contains
low-level C/C++ code to rapidly read genetic data encoded in U.K.
Biobank or 'plink' formats. Prebuilt modeling options include one and
two factor models. Alternately, analyses may utilize arbitrary,
user-provided SEMs. See Verhulst, Maes, & Neale (2017)
<doi:10.1007/s10519-017-9842-6> for details. An updated manuscript is
in preparation.
Author: Joshua N. Pritikin [aut, cre],
Bradley Verhulst [cph],
Gavin Band [cph],
Yann Collet [cph],
Facebook, Inc. [cph],
Yuta Mori [cph],
Shaun Purcell [cph],
Christopher Chang [cph],
Wojciech Mula [cph],
Kim Walisch [cph]
Maintainer: Joshua N. Pritikin <jpritikin@pobox.com>
Diff between gwsem versions 2.0.5 dated 2020-06-14 and 2.0.7 dated 2020-08-30
gwsem-2.0.5/gwsem/build/vignette.rds |only gwsem-2.0.5/gwsem/inst/doc |only gwsem-2.0.5/gwsem/vignettes |only gwsem-2.0.7/gwsem/DESCRIPTION | 13 - gwsem-2.0.7/gwsem/MD5 | 90 ++----- gwsem-2.0.7/gwsem/NAMESPACE | 5 gwsem-2.0.7/gwsem/R/model.R | 100 +++++--- gwsem-2.0.7/gwsem/R/report.R | 261 +++++++++++----------- gwsem-2.0.7/gwsem/README.md | 6 gwsem-2.0.7/gwsem/build/gwsem.pdf |binary gwsem-2.0.7/gwsem/man/GWAS.Rd | 12 - gwsem-2.0.7/gwsem/man/buildItem.Rd | 5 gwsem-2.0.7/gwsem/man/buildOneFac.Rd | 5 gwsem-2.0.7/gwsem/man/buildOneFacRes.Rd | 5 gwsem-2.0.7/gwsem/man/buildTwoFac.Rd | 5 gwsem-2.0.7/gwsem/man/isSuspicious.Rd | 27 -- gwsem-2.0.7/gwsem/man/loadResults.Rd | 31 -- gwsem-2.0.7/gwsem/man/loadSuspicious.Rd | 14 - gwsem-2.0.7/gwsem/man/plot.gwsemResult.Rd | 3 gwsem-2.0.7/gwsem/man/prepareComputePlan.Rd | 5 gwsem-2.0.7/gwsem/man/signif.Rd |only gwsem-2.0.7/gwsem/man/signifGxE.Rd |only gwsem-2.0.7/gwsem/src/LoadDataAPI.h | 39 +-- gwsem-2.0.7/gwsem/src/loader.cpp | 160 +++++++------ gwsem-2.0.7/gwsem/src/openmx.h | 39 +++ gwsem-2.0.7/gwsem/tests/testthat/test-covariate.R | 61 +++-- gwsem-2.0.7/gwsem/tests/testthat/test-formats.R | 18 - gwsem-2.0.7/gwsem/tests/testthat/test-gxe.R | 13 - gwsem-2.0.7/gwsem/tests/testthat/test-model.R | 13 - gwsem-2.0.7/gwsem/tests/testthat/test-rowFilter.R |only gwsem-2.0.7/gwsem/tools/test | 2 gwsem-2.0.7/gwsem/tools/travis/install-linux | 24 +- gwsem-2.0.7/gwsem/tools/vignetter | 4 33 files changed, 535 insertions(+), 425 deletions(-)