Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-10-27 0.6.6
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-01-05 0.1.0
Title: Prediction Explanation with Dependence-Aware Shapley Values
Description: Complex machine learning models are often hard to interpret. However, in
many situations it is crucial to understand and explain why a model made a specific
prediction. Shapley values is the only method for such prediction explanation framework
with a solid theoretical foundation. Previously known methods for estimating the Shapley
values do, however, assume feature independence. This package implements the method
described in Aas, Jullum and Løland (2019) <arXiv:1903.10464>, which accounts for any feature
dependence, and thereby produces more accurate estimates of the true Shapley values.
Author: Nikolai Sellereite [aut] (<https://orcid.org/0000-0002-4671-0337>),
Martin Jullum [cre, aut] (<https://orcid.org/0000-0003-3908-5155>),
Anders Løland [ctb],
Jens Christian Wahl [ctb],
Camilla Lingjærde [ctb],
Norsk Regnesentral [cph, fnd]
Maintainer: Martin Jullum <Martin.Jullum@nr.no>
Diff between shapr versions 0.1.2 dated 2020-09-03 and 0.1.3 dated 2020-09-03
DESCRIPTION | 6 +-- MD5 | 14 +++---- NEWS.md | 25 ++++++++----- README.md | 8 ++++ build/vignette.rds |binary man/hat_matrix_cpp.Rd | 54 ++++++++++++++--------------- man/prediction.Rd | 92 +++++++++++++++++++++++++------------------------- src/distance.cpp | 2 - 8 files changed, 107 insertions(+), 94 deletions(-)
Title: 'Rcpp' Integration for the 'Armadillo' Templated Linear Algebra
Library
Description: 'Armadillo' is a templated C++ linear algebra library (by Conrad
Sanderson) that aims towards a good balance between speed and ease of use. Integer,
floating point and complex numbers are supported, as well as a subset of
trigonometric and statistics functions. Various matrix decompositions are
provided through optional integration with LAPACK and ATLAS libraries.
The 'RcppArmadillo' package includes the header files from the templated
'Armadillo' library. Thus users do not need to install 'Armadillo' itself in
order to use 'RcppArmadillo'. From release 7.800.0 on, 'Armadillo' is
licensed under Apache License 2; previous releases were under licensed as
MPL 2.0 from version 3.800.0 onwards and LGPL-3 prior to that;
'RcppArmadillo' (the 'Rcpp' bindings/bridge to Armadillo) is licensed under
the GNU GPL version 2 or later, as is the rest of 'Rcpp'. Note that
Armadillo requires a fairly recent compiler; for the g++ family at least
version 4.6.* is required.
Author: Dirk Eddelbuettel, Romain Francois, Doug Bates and Binxiang Ni
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppArmadillo versions 0.9.900.2.0 dated 2020-07-17 and 0.9.900.3.0 dated 2020-09-03
ChangeLog | 8 +++ DESCRIPTION | 8 +-- MD5 | 38 ++++++++--------- configure | 18 ++++---- inst/NEWS.Rd | 16 ++++--- inst/doc/RcppArmadillo-intro.pdf |binary inst/doc/RcppArmadillo-sparseMatrix.pdf |binary inst/include/armadillo_bits/Cube_meat.hpp | 4 - inst/include/armadillo_bits/MapMat_meat.hpp | 4 - inst/include/armadillo_bits/Mat_meat.hpp | 4 - inst/include/armadillo_bits/SpMat_meat.hpp | 4 - inst/include/armadillo_bits/SpSubview_bones.hpp | 4 - inst/include/armadillo_bits/SpSubview_meat.hpp | 4 - inst/include/armadillo_bits/arma_version.hpp | 2 inst/include/armadillo_bits/arrayops_bones.hpp | 7 ++- inst/include/armadillo_bits/arrayops_meat.hpp | 53 +++++++++++++++--------- inst/include/armadillo_bits/band_helper.hpp | 6 +- inst/include/armadillo_bits/diskio_bones.hpp | 17 ++++++- inst/include/armadillo_bits/field_meat.hpp | 4 - inst/include/armadillo_bits/sp_auxlib_meat.hpp | 2 20 files changed, 126 insertions(+), 77 deletions(-)
Title: Feature Selection (Including Multiple Solutions) and Bayesian
Networks
Description: Many feature selection methods for a wide range of response variables, including minimal, statistically-equivalent and equally-predictive feature subsets. Bayesian network algorithms and related functions are also included. The package name 'MXM' stands for "Mens eX Machina", meaning "Mind from the Machine" in Latin. References: a) Lagani, V. and Athineou, G. and Farcomeni, A. and Tsagris, M. and Tsamardinos, I. (2017). Feature Selection with the R Package MXM: Discovering Statistically Equivalent Feature Subsets. Journal of Statistical Software, 80(7). <doi:10.18637/jss.v080.i07>. b) Tsagris, M., Lagani, V. and Tsamardinos, I. (2018). Feature selection for high-dimensional temporal data. BMC Bioinformatics, 19:17. <doi:10.1186/s12859-018-2023-7>. c) Tsagris, M., Borboudakis, G., Lagani, V. and Tsamardinos, I. (2018). Constraint-based causal discovery with mixed data. International Journal of Data Science and Analytics, 6(1): 19-30. <doi:10.1007/s41060-018-0097-y>. d) Tsagris, M., Papadovasilakis, Z., Lakiotaki, K. and Tsamardinos, I. (2018). Efficient feature selection on gene expression data: Which algorithm to use? BioRxiv. <doi:10.1101/431734>. e) Tsagris, M. (2019). Bayesian Network Learning with the PC Algorithm: An Improved and Correct Variation. Applied Artificial Intelligence, 33(2):101-123. <doi:10.1080/08839514.2018.1526760>. f) Tsagris, M. and Tsamardinos, I. (2019). Feature selection with the R package MXM. F1000Research 7: 1505. <doi:10.12688/f1000research.16216.2>. g) Borboudakis, G. and Tsamardinos, I. (2019). Forward-Backward Selection with Early Dropping. Journal of Machine Learning Research 20: 1-39.
Author: Michail Tsagris [aut, cre],
Ioannis Tsamardinos [aut, cph],
Vincenzo Lagani [aut, cph],
Giorgos Athineou [aut],
Giorgos Borboudakis [ctb],
Anna Roumpelaki [ctb]
Maintainer: Michail Tsagris <mtsagris@uoc.gr>
Diff between MXM versions 1.4.8 dated 2020-07-26 and 1.4.9 dated 2020-09-03
DESCRIPTION | 8 +- MD5 | 58 +++++++++---------- R/gomp.R | 2 build/vignette.rds |binary inst/doc/FBED_KVerrou_2_5.html | 86 ++++++++++++++-------------- inst/doc/FS_guide.pdf |binary inst/doc/MMPC_tutorial.Rmd | 2 inst/doc/MMPC_tutorial.html | 88 ++++++++++++++--------------- inst/doc/Networks_KVerrou.html | 82 +++++++++++++-------------- inst/doc/SES_KMVerrou_11_12.Rmd | 5 - inst/doc/SES_KMVerrou_11_12.html | 118 +++++++++++++++++++-------------------- inst/doc/article.pdf |binary inst/doc/guide.pdf |binary man/MXM-package.Rd | 7 -- man/SES.Rd | 4 - man/big.fbed.reg.Rd | 4 - man/corfs.network.Rd | 4 - man/ebic.bsreg.Rd | 3 man/fbed.reg.Rd | 4 - man/gomp.Rd | 14 +--- man/iamb.Rd | 4 - man/mmmb.Rd | 4 - man/mmpc.path.Rd | 4 - man/mmpc2.Rd | 4 - man/pc.sel.Rd | 1 man/sp.logiregs.Rd | 4 - man/transitiveClosure.Rd | 2 man/zip.mod.Rd | 2 vignettes/MMPC_tutorial.Rmd | 2 vignettes/SES_KMVerrou_11_12.Rmd | 5 - 30 files changed, 256 insertions(+), 265 deletions(-)
Title: Complement to 'Modern Data Science with R'
Description: A complement to *Modern Data
Science with R* (ISBN: 978-1498724487, publisher URL:
<https://www.routledge.com/Modern-Data-Science-with-R/Baumer-Kaplan-Horton/p/book/9781498724487>).
This package contains data and code to complete exercises and
reproduce examples from the text. It also facilitates connections
to the SQL database server used in the book. Both version of the book are
supported by this package.
Author: Benjamin S. Baumer [aut, cre] (<https://orcid.org/0000-0002-3279-0516>),
Nicholas Horton [aut] (<https://orcid.org/0000-0003-3332-4311>),
Daniel Kaplan [aut]
Maintainer: Benjamin S. Baumer <ben.baumer@gmail.com>
Diff between mdsr versions 0.1.7 dated 2019-05-20 and 0.2.0 dated 2020-09-03
mdsr-0.1.7/mdsr/R/attach.R |only mdsr-0.1.7/mdsr/data/OrdwayBirds.rda |only mdsr-0.1.7/mdsr/data/WorldCities.rda |only mdsr-0.1.7/mdsr/data/datalist |only mdsr-0.1.7/mdsr/man/OrdwayBirds.Rd |only mdsr-0.1.7/mdsr/man/WorldCities.Rd |only mdsr-0.2.0/mdsr/DESCRIPTION | 46 +++++--- mdsr-0.2.0/mdsr/MD5 | 86 +++++++++------- mdsr-0.2.0/mdsr/NAMESPACE | 12 ++ mdsr-0.2.0/mdsr/NEWS.md | 18 +++ mdsr-0.2.0/mdsr/R/BabynameDist.R | 44 ++++---- mdsr-0.2.0/mdsr/R/NCI60.R | 2 mdsr-0.2.0/mdsr/R/data.R | 153 +++++++++++++++++++---------- mdsr-0.2.0/mdsr/R/macros.R |only mdsr-0.2.0/mdsr/R/scidb.R | 4 mdsr-0.2.0/mdsr/R/themes.R | 41 ++++++- mdsr-0.2.0/mdsr/R/webshot.R |only mdsr-0.2.0/mdsr/README.md | 12 +- mdsr-0.2.0/mdsr/data/CholeraDeaths.rda |binary mdsr-0.2.0/mdsr/data/CholeraPumps.rda |binary mdsr-0.2.0/mdsr/data/DataSciencePapers.rda |binary mdsr-0.2.0/mdsr/data/Emails_test.rda |only mdsr-0.2.0/mdsr/data/Emails_train.rda |only mdsr-0.2.0/mdsr/data/Headlines_test.rda |only mdsr-0.2.0/mdsr/data/Headlines_train.rda |only mdsr-0.2.0/mdsr/data/MedicareCharges.rda |binary mdsr-0.2.0/mdsr/data/MedicareProviders.rda |binary mdsr-0.2.0/mdsr/data/ordway_birds.rda |only mdsr-0.2.0/mdsr/data/world_cities.rda |only mdsr-0.2.0/mdsr/man/CIACountries.Rd | 10 - mdsr-0.2.0/mdsr/man/Cherry.Rd | 6 - mdsr-0.2.0/mdsr/man/CholeraDeaths.Rd | 12 +- mdsr-0.2.0/mdsr/man/DataSciencePapers.Rd | 17 +-- mdsr-0.2.0/mdsr/man/Elections.Rd | 6 - mdsr-0.2.0/mdsr/man/Emails_train.Rd |only mdsr-0.2.0/mdsr/man/Headlines_train.Rd |only mdsr-0.2.0/mdsr/man/MLB_teams.Rd | 6 - mdsr-0.2.0/mdsr/man/Macbeth_raw.Rd | 6 - mdsr-0.2.0/mdsr/man/MedicareCharges.Rd | 15 +- mdsr-0.2.0/mdsr/man/MedicareProviders.Rd | 8 - mdsr-0.2.0/mdsr/man/Minneapolis2013.Rd | 14 +- mdsr-0.2.0/mdsr/man/NCI60_tiny.Rd | 12 +- mdsr-0.2.0/mdsr/man/SAT_2010.Rd | 6 - mdsr-0.2.0/mdsr/man/Violations.Rd | 35 +++++- mdsr-0.2.0/mdsr/man/Votes.Rd | 8 + mdsr-0.2.0/mdsr/man/figures |only mdsr-0.2.0/mdsr/man/macros.Rd |only mdsr-0.2.0/mdsr/man/make_babynames_dist.Rd | 7 - mdsr-0.2.0/mdsr/man/ordway_birds.Rd |only mdsr-0.2.0/mdsr/man/save_webshot.Rd |only mdsr-0.2.0/mdsr/man/skim.Rd |only mdsr-0.2.0/mdsr/man/src_scidb.Rd | 4 mdsr-0.2.0/mdsr/man/theme_mdsr.Rd | 13 +- mdsr-0.2.0/mdsr/man/world_cities.Rd |only mdsr-0.2.0/mdsr/tests/testthat/tests.R | 23 ++++ 55 files changed, 422 insertions(+), 204 deletions(-)
Title: Core Tools for Packages in the 'fable' Framework
Description: Provides tools, helpers and data structures for
developing models and time series functions for 'fable' and extension
packages. These tools support a consistent and tidy interface for time
series modelling and analysis.
Author: Mitchell O'Hara-Wild [aut, cre],
Rob Hyndman [aut],
Earo Wang [aut],
Di Cook [ctb],
George Athanasopoulos [ctb]
Maintainer: Mitchell O'Hara-Wild <mail@mitchelloharawild.com>
Diff between fabletools versions 0.2.0 dated 2020-06-15 and 0.2.1 dated 2020-09-03
fabletools-0.2.0/fabletools/R/fabletools.R |only fabletools-0.2.0/fabletools/R/quantile.R |only fabletools-0.2.0/fabletools/man/distributions.Rd |only fabletools-0.2.0/fabletools/man/fcdist.Rd |only fabletools-0.2.0/fabletools/vignettes/temporal.R |only fabletools-0.2.0/fabletools/vignettes/temporal.html |only fabletools-0.2.1/fabletools/DESCRIPTION | 17 fabletools-0.2.1/fabletools/MD5 | 114 +-- fabletools-0.2.1/fabletools/NAMESPACE | 52 - fabletools-0.2.1/fabletools/NEWS.md | 53 + fabletools-0.2.1/fabletools/R/accuracy.R | 99 ++- fabletools-0.2.1/fabletools/R/aggregate.R | 187 +++-- fabletools-0.2.1/fabletools/R/broom.R | 49 - fabletools-0.2.1/fabletools/R/components.R | 3 fabletools-0.2.1/fabletools/R/dable.R | 4 fabletools-0.2.1/fabletools/R/definitions.R | 2 fabletools-0.2.1/fabletools/R/dplyr-fable.R | 20 fabletools-0.2.1/fabletools/R/dplyr-mable.R | 5 fabletools-0.2.1/fabletools/R/fable.R | 60 + fabletools-0.2.1/fabletools/R/fabletools-package.R |only fabletools-0.2.1/fabletools/R/features.R | 7 fabletools-0.2.1/fabletools/R/fitted.R | 18 fabletools-0.2.1/fabletools/R/forecast.R | 53 - fabletools-0.2.1/fabletools/R/generate.R | 5 fabletools-0.2.1/fabletools/R/lst_mdl.R | 18 fabletools-0.2.1/fabletools/R/mable.R | 18 fabletools-0.2.1/fabletools/R/model_combination.R | 2 fabletools-0.2.1/fabletools/R/model_null.R | 31 fabletools-0.2.1/fabletools/R/parse.R | 4 fabletools-0.2.1/fabletools/R/plot.R | 45 - fabletools-0.2.1/fabletools/R/reconciliation.R | 312 ++++++---- fabletools-0.2.1/fabletools/R/refit.R | 5 fabletools-0.2.1/fabletools/R/residuals.R | 28 fabletools-0.2.1/fabletools/R/response.R | 9 fabletools-0.2.1/fabletools/R/temporal_aggregation.R |only fabletools-0.2.1/fabletools/R/utils.R | 36 - fabletools-0.2.1/fabletools/R/vctrs-dable.R | 9 fabletools-0.2.1/fabletools/R/vctrs-fable.R | 9 fabletools-0.2.1/fabletools/R/zzz.R | 6 fabletools-0.2.1/fabletools/README.md | 4 fabletools-0.2.1/fabletools/build/fabletools.pdf |binary fabletools-0.2.1/fabletools/build/vignette.rds |binary fabletools-0.2.1/fabletools/inst/WORDLIST | 1 fabletools-0.2.1/fabletools/inst/doc/extension_models.Rmd | 2 fabletools-0.2.1/fabletools/inst/doc/extension_models.html | 21 fabletools-0.2.1/fabletools/man/agg_vec.Rd |only fabletools-0.2.1/fabletools/man/aggregate_index.Rd |only fabletools-0.2.1/fabletools/man/as-dable.Rd | 3 fabletools-0.2.1/fabletools/man/as-fable.Rd | 14 fabletools-0.2.1/fabletools/man/augment.Rd | 6 fabletools-0.2.1/fabletools/man/bottom_up.Rd |only fabletools-0.2.1/fabletools/man/construct_fc.Rd | 6 fabletools-0.2.1/fabletools/man/dable.Rd | 3 fabletools-0.2.1/fabletools/man/fable.Rd | 11 fabletools-0.2.1/fabletools/man/fabletools-package.Rd | 4 fabletools-0.2.1/fabletools/man/figures/lifecycle-superseded.svg |only fabletools-0.2.1/fabletools/man/forecast.Rd | 11 fabletools-0.2.1/fabletools/man/skill_score.Rd |only fabletools-0.2.1/fabletools/man/top_down.Rd |only fabletools-0.2.1/fabletools/tests/testthat/Rplots.pdf |binary fabletools-0.2.1/fabletools/tests/testthat/test-accuracy.R | 11 fabletools-0.2.1/fabletools/tests/testthat/test-broom.R | 13 fabletools-0.2.1/fabletools/tests/testthat/test-combination.R | 12 fabletools-0.2.1/fabletools/tests/testthat/test-parser.R | 10 fabletools-0.2.1/fabletools/vignettes/extension_models.Rmd | 2 65 files changed, 933 insertions(+), 481 deletions(-)
Title: Approximate Unconditional and Permutation Tests
Description: Performs approximate unconditional and permutation testing for
2x2 contingency tables. Motivated by testing for disease association with rare
genetic variants in case-control studies. When variants are extremely rare,
these tests give better control of Type I error than standard tests.
Author: Arjun Sondhi, Ken Rice
Maintainer: Arjun Sondhi <asondhi@uw.edu>
Diff between AUtests versions 0.98 dated 2016-06-13 and 0.99 dated 2020-09-03
DESCRIPTION | 8 MD5 | 14 - R/au.firth.r | 113 +++++------ R/basic.tests.r | 157 ++++++++------- R/perm.tests.r | 225 +++++++++++----------- build/vignette.rds |binary inst/doc/vignette-html.R | 54 ++--- inst/doc/vignette-html.html | 434 ++++++++++++++++++++++++++++++-------------- 8 files changed, 594 insertions(+), 411 deletions(-)
Title: Helps Grade Assignment Submissions that are R Scripts
Description: After being given the location of your students' submissions and a test file, the function runs each .R file, and evaluates the results from all the given tests. Results are neatly returned in a data frame that has a row for each student, and a column for each test.
Author: Taylor Brown [aut, cre]
Maintainer: Taylor Brown <trb5me@virginia.edu>
Diff between gradeR versions 1.0.7 dated 2020-06-17 and 1.0.8 dated 2020-09-03
DESCRIPTION | 8 ++--- MD5 | 18 ++++++------- NEWS.md | 9 ++++++ R/grade.r | 40 ++++++++++++++++++++++++----- build/vignette.rds |binary inst/doc/gradeR.html | 16 +++++++++++ inst/doc/using_gradeR_with_Gradescope.Rmd | 4 +- inst/doc/using_gradeR_with_Gradescope.html | 20 +++++++++++++- man/calcGradesForGradescope.Rd | 5 ++- vignettes/using_gradeR_with_Gradescope.Rmd | 4 +- 10 files changed, 98 insertions(+), 26 deletions(-)
Title: Group Iterative Multiple Model Estimation
Description: Automated identification and estimation of group- and
individual-level relations in time series data from within a structural
equation modeling framework.
Author: Stephanie Lane [aut, trl],
Kathleen Gates [aut, cre],
Zachary Fisher [aut],
Cara Arizmendi [aut],
Peter Molenaar [aut],
Michael Hallquist [ctb],
Hallie Pike [ctb],
Teague Henry [ctb],
Kelly Duffy [ctb],
Lan Luo [ctb],
Adriene Beltz [csp]
Maintainer: KM Gates <gateskm@email.unc.edu>
Diff between gimme versions 0.7-1 dated 2020-02-15 and 0.7-2 dated 2020-09-03
DESCRIPTION | 8 ++-- MD5 | 22 ++++++------- R/determine.subgroups.R | 2 + R/final.org.R | 11 +++++- R/get.params.R | 70 ++++++++++++++++++++++--------------------- R/gimme.R | 3 + R/indiv.search.ms.R | 2 - R/setup.R | 6 ++- R/setupTransformData.R | 5 +-- inst/doc/gimme_vignette.html | 4 +- man/get.params.Rd | 2 - man/setupTransformData.Rd | 3 + 12 files changed, 77 insertions(+), 61 deletions(-)
Title: ExifTool Functionality from R
Description: Reads, writes, and edits EXIF and other file metadata
using ExifTool <https://exiftool.org/>,
returning read results as a data frame. ExifTool supports many
different metadata formats including EXIF, GPS, IPTC, XMP, JFIF,
GeoTIFF, ICC Profile, Photoshop IRB, FlashPix, AFCP and ID3, as
well as the maker notes of many digital cameras by Canon, Casio,
DJI, FLIR, FujiFilm, GE, GoPro, HP, JVC/Victor, Kodak, Leaf,
Minolta/Konica-Minolta, Motorola, Nikon, Nintendo, Olympus/Epson,
Panasonic/Leica, Pentax/Asahi, Phase One, Reconyx, Ricoh, Samsung,
Sanyo, Sigma/Foveon and Sony.
Author: Joshua O'Brien [aut, cre]
Maintainer: Joshua O'Brien <joshmobrien@gmail.com>
Diff between exiftoolr versions 0.1.3 dated 2020-05-30 and 0.1.4 dated 2020-09-03
DESCRIPTION | 10 +++++----- MD5 | 6 +++--- NEWS.md | 9 +++++++++ R/exif_read.R | 2 +- 4 files changed, 18 insertions(+), 9 deletions(-)
Title: A 'robots.txt' Parser and 'Webbot'/'Spider'/'Crawler'
Permissions Checker
Description: Provides functions to download and parse 'robots.txt' files.
Ultimately the package makes it easy to check if bots
(spiders, crawler, scrapers, ...) are allowed to access specific
resources on a domain.
Author: Peter Meissner [aut, cre],
Kun Ren [aut, cph] (Author and copyright holder of list_merge.R.),
Oliver Keys [ctb] (original release code review),
Rich Fitz John [ctb] (original release code review)
Maintainer: Peter Meissner <retep.meissner@gmail.com>
Diff between robotstxt versions 0.7.8 dated 2020-07-25 and 0.7.13 dated 2020-09-03
DESCRIPTION | 12 LICENSE | 20 MD5 | 120 - NEWS.md | 50 R/fix_url.R | 24 R/get_robotstxt.R | 274 +-- R/get_robotstxt_http_get.R | 114 - R/get_robotstxts.R | 246 +- R/http_domain_changed.R | 100 - R/http_subdomain_changed.R | 100 - R/http_was_redirected.R | 44 R/is_suspect_robotstxt.R | 60 R/is_valid_robotstxt.R | 66 R/list_merge.R | 82 R/null_to_default.R | 24 R/parse_robotstxt.R | 82 R/parse_url.R | 94 - R/paths_allowed.R | 250 +-- R/print_robotstxt_text.R | 62 R/request_handler_handler.R | 148 - R/robotstxt.R | 288 +-- R/rt_get_fields.R | 187 +- R/rt_request_handler.R | 502 +++--- R/rt_request_handler_defaults.R | 176 +- R/sanitize_path.R | 20 README.md | 32 inst/doc/using_robotstxt.Rmd | 274 +-- inst/doc/using_robotstxt.html | 10 inst/robotstxts/robots_cdc.txt | 92 - inst/robotstxts/robots_cdc2.txt | 92 - inst/robotstxts/robots_commented_token.txt |only inst/urls.txt | 2008 ++++++++++++------------ man/fix_url.Rd | 28 man/guess_domain.Rd | 28 man/http_domain_changed.Rd | 36 man/http_was_redirected.Rd | 36 man/is_suspect_robotstxt.Rd | 28 man/is_valid_robotstxt.Rd | 30 man/named_list.Rd | 30 man/null_to_defeault.Rd | 32 man/parse_robotstxt.Rd | 34 man/pipe.Rd | 16 man/print.robotstxt.Rd | 32 man/print.robotstxt_text.Rd | 32 man/remove_domain.Rd | 28 man/rt_cache.Rd | 32 man/rt_get_comments.Rd | 30 man/rt_get_fields.Rd | 38 man/rt_get_rtxt.Rd | 32 man/rt_get_useragent.Rd | 30 man/rt_list_rtxt.Rd | 26 man/sanitize_path.Rd | 36 tests/testthat/test_attribute_handling.R | 198 +- tests/testthat/test_get_robotstxt.R | 72 tests/testthat/test_http_event_handling.R | 432 ++--- tests/testthat/test_issue50.R | 130 - tests/testthat/test_parser.R | 221 ++ tests/testthat/test_path_examples_from_rfc.R |only tests/testthat/test_paths_allowed.R | 2232 +++++++++++++-------------- tests/testthat/test_robotstxt.R | 236 +- tests/testthat/test_tools.R | 226 +- vignettes/using_robotstxt.Rmd | 274 +-- 62 files changed, 5263 insertions(+), 5025 deletions(-)
Title: Friendly R Startup Configuration
Description: Adds support for R startup configuration via '.Renviron.d' and '.Rprofile.d' directories in addition to '.Renviron' and '.Rprofile' files. This makes it possible to keep private / secret environment variables separate from other environment variables. It also makes it easier to share specific startup settings by simply copying a file to a directory.
Author: Henrik Bengtsson [aut, cre, cph]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between startup versions 0.14.1 dated 2020-04-01 and 0.15.0 dated 2020-09-03
DESCRIPTION | 8 ++--- MD5 | 52 +++++++++++++++++++------------------- NEWS | 26 ++++++++++++++++--- R/agenda.R | 4 +- R/api.R | 2 - R/backup.R | 2 - R/check.R | 27 ++++++------------- R/conditions.R | 2 - R/files_apply.R | 8 ++--- R/find_files.R | 19 ++++++++++--- R/install.R | 16 +++++------ R/options.R | 8 +++++ R/restart.R | 6 ++-- R/startup.R | 56 +++++++++++++++++++++-------------------- R/unload.R | 4 +- R/utils.R | 45 ++++++++++++++++++++------------ R/zzz.R | 3 +- README.md | 29 ++++++++++++--------- build/vignette.rds |binary inst/doc/startup-intro.html | 9 ++---- inst/doc/startup-intro.md | 12 +++++--- man/is_debug_on.Rd | 2 - man/startup.Rd | 2 - man/startup.options.Rd | 10 +++++-- man/startup_session_options.Rd | 2 - man/warn.Rd | 4 +- vignettes/startup-intro.md | 12 +++++--- 27 files changed, 213 insertions(+), 157 deletions(-)
Title: Process Digital Images of a Vegetation Cover
Description: A collection of functions to process digital images, depict greenness index trajectories and extract relevant phenological stages.
Author: Gianluca Filippa, Edoardo Cremonese, Mirco Migliavacca, Marta Galvagno, Matthias Folker, Andrew D. Richardson, Enrico Tomelleri
Maintainer: Gianluca Filippa <gian.filippa@gmail.com>
Diff between phenopix versions 2.4.1 dated 2020-06-06 and 2.4.2 dated 2020-09-03
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/convertROI.R | 1 - R/extractVIs.R | 12 +++++++----- R/plotSpatial.R | 2 +- 5 files changed, 16 insertions(+), 15 deletions(-)
Title: Models for Non Linear Causality Detection in Time Series
Description: Models for non-linear time series analysis and causality detection. The main functionalities of this package consist of an implementation of the classical causality test (C.W.J.Granger 1980) <doi:10.1016/0165-1889(80)90069-X>, and a non-linear version of it based on feed-forward neural networks. This package contains also an implementation of the Transfer Entropy <doi:10.1103/PhysRevLett.85.461>, and the continuous Transfer Entropy using an approximation based on the k-nearest neighbors <doi:10.1103/PhysRevE.69.066138>. There are also some other useful tools, like the VARNN (Vector Auto-Regressive Neural Network) prediction model, the Augmented test of stationarity, and the discrete and continuous entropy and mutual information.
Author: Youssef Hmamouche [aut, cre]
Maintainer: Youssef Hmamouche <hmamoucheyussef@gmail.com>
Diff between NlinTS versions 1.4.2 dated 2020-08-03 and 1.4.3 dated 2020-09-03
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- build/partial.rdb |binary inst/include/nsEntropy.h | 1 + src/nsEntropy.cpp | 42 +++++++++++++++++++++++++++++++++++------- src/utils.cpp | 2 +- 6 files changed, 46 insertions(+), 17 deletions(-)
Title: Simulation-Based Power Analysis for Factorial Designs
Description: Functions to perform simulations of ANOVA designs of up to three factors. Calculates the observed power and average observed effect size for all main effects and interactions in the ANOVA, and all simple comparisons between conditions. Includes functions for analytic power calculations and additional helper functions that compute effect sizes for ANOVA designs, observed error rates in the simulations, and functions to plot power curves. Please see Lakens, D., & Caldwell, A. R. (2019). "Simulation-Based Power-Analysis for Factorial ANOVA Designs". <doi:10.31234/osf.io/baxsf>.
Author: Aaron Caldwell [aut, cre],
Daniel Lakens [aut],
Lisa DeBruine [ctb],
Jonathon Love [ctb],
Frederik Aust [ctb] (<https://orcid.org/0000-0003-4900-788X>)
Maintainer: Aaron Caldwell <arcaldwell49@gmail.com>
Diff between Superpower versions 0.0.3 dated 2020-02-17 and 0.1.0 dated 2020-09-03
DESCRIPTION | 22 MD5 | 86 ++- NAMESPACE | 27 + NEWS.md | 49 + R/ANOVA_compromise.R |only R/ANOVA_design.R | 84 --- R/ANOVA_exact.R | 497 +++++++++++++++++-- R/ANOVA_power.R | 41 - R/Superpower_options.R | 1 R/alpha_standardized.R |only R/effect_sizes.R | 70 ++ R/emmeans_power.R |only R/exact_extrapolate_functions.R |only R/generate_cor_matrix.R |only R/globals.R |only R/methods.design_aov.R |only R/methods.sim_result.R |only R/minimize_balance_alpha.R |only R/p_standardized.R |only R/plot_power.R | 451 ++++++++++------- R/power_ftest.R |only R/power_standardized_alpha.R |only R/zzz.R | 5 README.md | 68 +- build/vignette.rds |binary inst/CITATION | 4 inst/doc/compromise_power.R |only inst/doc/compromise_power.Rmd |only inst/doc/compromise_power.html |only inst/doc/emmeans_power.R |only inst/doc/emmeans_power.Rmd |only inst/doc/emmeans_power.html |only inst/doc/intro_to_superpower.R | 30 - inst/doc/intro_to_superpower.Rmd | 47 + inst/doc/intro_to_superpower.html | 847 ++++++++++++++++++--------------- man/ANOVA_compromise.Rd |only man/ANOVA_exact.Rd | 26 - man/ANOVA_power.Rd | 173 +++--- man/Superpower_options.Rd | 1 man/alpha_standardized.Rd |only man/design_aov-methods.Rd |only man/emmeans_power.Rd |only man/optimal_alpha.Rd |only man/p_standardized.Rd |only man/plot_power.Rd | 159 +++--- man/power.ftest.Rd |only man/power_standardized_alpha.Rd |only man/sim_result-methods.Rd |only tests/testthat/Rplots.pdf |only tests/testthat/test-ANOVA_compromise.R |only tests/testthat/test-anova_design.R | 19 tests/testthat/test-anova_exact.R | 256 +++++++++ tests/testthat/test-anova_power.R | 88 +++ tests/testthat/test-emmeans_power.R |only tests/testthat/test-justifieR.R |only tests/testthat/test-mu_from_ES.R | 3 tests/testthat/test-plot_power.R | 187 +++++++ tests/testthat/test-powerftest.R |only vignettes/compromise_power.Rmd |only vignettes/emmeans_power.Rmd |only vignettes/intro_to_superpower.Rmd | 47 + 61 files changed, 2314 insertions(+), 974 deletions(-)
Title: Tools to Calculate Climate Targets for Financial Portfolios
Description: These tools help you to assess if a financial
portfolio aligns with climate goals. They summarize key metrics
attributed to the portfolio (e.g. production, emission factors), and
calculate targets based on climate scenarios. They implement in R the
last step of the free software 'PACTA' (Paris Agreement Capital
Transition Assessment; <https://2degrees-investing.org/>). Financial
institutions use 'PACTA' to study how their capital allocation impacts
the climate.
Author: Jackson Hoffart [aut, cre] (<https://orcid.org/0000-0002-8600-5042>),
Mauro Lepore [aut, ctr] (<https://orcid.org/0000-0002-1986-7988>),
Klaus Hogedorn [aut],
2 Degrees Investing Initiative [cph, fnd]
Maintainer: Jackson Hoffart <jackson.hoffart@gmail.com>
Diff between r2dii.analysis versions 0.0.1 dated 2020-06-28 and 0.1.0 dated 2020-09-03
r2dii.analysis-0.0.1/r2dii.analysis/R/sysdata.rda |only r2dii.analysis-0.1.0/r2dii.analysis/DESCRIPTION | 13 r2dii.analysis-0.1.0/r2dii.analysis/MD5 | 52 - r2dii.analysis-0.1.0/r2dii.analysis/NAMESPACE | 7 r2dii.analysis-0.1.0/r2dii.analysis/NEWS.md |only r2dii.analysis-0.1.0/r2dii.analysis/R/check_crucial_names.R | 5 r2dii.analysis-0.1.0/r2dii.analysis/R/imports.R | 5 r2dii.analysis-0.1.0/r2dii.analysis/R/join_ald_scenario.R | 18 r2dii.analysis-0.1.0/r2dii.analysis/R/summarize_weighted_production.R | 243 +++++- r2dii.analysis-0.1.0/r2dii.analysis/R/target_market_share.R | 251 ++++-- r2dii.analysis-0.1.0/r2dii.analysis/R/target_sda.R | 360 ++++++--- r2dii.analysis-0.1.0/r2dii.analysis/R/utils-pipe.R | 2 r2dii.analysis-0.1.0/r2dii.analysis/R/utils.R | 16 r2dii.analysis-0.1.0/r2dii.analysis/README.md | 171 ++-- r2dii.analysis-0.1.0/r2dii.analysis/inst/WORDLIST | 17 r2dii.analysis-0.1.0/r2dii.analysis/man/summarize_weighted_production.Rd | 44 - r2dii.analysis-0.1.0/r2dii.analysis/man/target_market_share.Rd | 70 + r2dii.analysis-0.1.0/r2dii.analysis/man/target_sda.Rd | 52 + r2dii.analysis-0.1.0/r2dii.analysis/tests/testthat/helper-fake_data.R | 12 r2dii.analysis-0.1.0/r2dii.analysis/tests/testthat/ref-join_ald_scenario |binary r2dii.analysis-0.1.0/r2dii.analysis/tests/testthat/ref-summarize_weighted_percent_change-credit_limit0 |only r2dii.analysis-0.1.0/r2dii.analysis/tests/testthat/ref-summarize_weighted_percent_change-credit_limit1 |only r2dii.analysis-0.1.0/r2dii.analysis/tests/testthat/ref-summarize_weighted_production-credit_limit0 |only r2dii.analysis-0.1.0/r2dii.analysis/tests/testthat/ref-summarize_weighted_production-credit_limit1 |only r2dii.analysis-0.1.0/r2dii.analysis/tests/testthat/ref-target_market_share |binary r2dii.analysis-0.1.0/r2dii.analysis/tests/testthat/ref-target_sda |binary r2dii.analysis-0.1.0/r2dii.analysis/tests/testthat/test-join_ald_scenario.R | 86 +- r2dii.analysis-0.1.0/r2dii.analysis/tests/testthat/test-summarize_weighted_production.R | 282 +++++++ r2dii.analysis-0.1.0/r2dii.analysis/tests/testthat/test-target_market_share.R | 165 ++++ r2dii.analysis-0.1.0/r2dii.analysis/tests/testthat/test-target_sda.R | 369 ++++++++-- 30 files changed, 1724 insertions(+), 516 deletions(-)
More information about r2dii.analysis at CRAN
Permanent link
Title: Calculates Probability of Superiority
Description: The A() function calculates the A statistic, a nonparametric
measure of effect size for two independent groups that’s also known as
the probability of superiority (Ruscio, 2008), along with its standard
error and a confidence interval constructed using bootstrap methods
(Ruscio & Mullen, 2012). Optional arguments can be specified to
calculate variants of the A statistic developed for other research
designs (e.g., related samples, more than two independent groups or
related samples; Ruscio & Gera, 2013).
<DOI: 10.1037/1082-989X.13.1.19>.
<DOI: 10.1080/00273171.2012.658329>.
<DOI: 10.1080/00273171.2012.738184>.
Author: John Ruscio
Maintainer: John Ruscio <ruscio@tcnj.edu>
Diff between RProbSup versions 2.2 dated 2020-07-14 and 2.3 dated 2020-09-03
DESCRIPTION | 6 +++--- MD5 | 4 ++-- R/A.R | 3 +-- 3 files changed, 6 insertions(+), 7 deletions(-)
Title: Execute and Control System Processes
Description: Tools to run system processes in the background.
It can check if a background process is running; wait on a background
process to finish; get the exit status of finished processes; kill
background processes. It can read the standard output and error of
the processes, using non-blocking connections. 'processx' can poll
a process for standard output or error, with a timeout. It can also
poll several processes at once.
Author: Gábor Csárdi [aut, cre, cph] (<https://orcid.org/0000-0001-7098-9676>),
Winston Chang [aut],
RStudio [cph, fnd],
Mango Solutions [cph, fnd]
Maintainer: Gábor Csárdi <csardi.gabor@gmail.com>
Diff between processx versions 3.4.3 dated 2020-07-05 and 3.4.4 dated 2020-09-03
DESCRIPTION | 6 +++--- MD5 | 24 +++++++++++++----------- NEWS.md | 7 +++++++ R/initialize.R | 3 +++ README.md | 4 ++-- src/Makevars.win | 5 ++++- src/client.c | 8 ++++++-- src/install.libs.R | 2 +- src/tools/px.c | 26 +++++++++++++++++++++----- src/tools/pxu.c |only src/win/processx.c | 4 ++-- tests/testthat/helper.R | 25 +++++++++++++++++++++++++ tests/testthat/test-env.R | 10 +++++----- tests/testthat/test-utf8.R |only 14 files changed, 92 insertions(+), 32 deletions(-)
Title: Encrypts and Decrypts Strings
Description: Encrypts and decrypts strings using either the Caesar cipher or a
pseudorandom number generation (using set.seed()) method.
Author: Jacob Kaplan [aut, cre] (<https://orcid.org/0000-0002-0601-0387>)
Maintainer: Jacob Kaplan <jkkaplan6@gmail.com>
Diff between caesar versions 1.0.0 dated 2019-05-09 and 1.1.0 dated 2020-09-03
DESCRIPTION | 9 +- MD5 | 26 +++--- NEWS.md | 4 R/caesar.R | 26 +++--- R/utils.R | 2 README.md | 26 +----- build/vignette.rds |binary inst/doc/Encrypting-and-decrypting-text.R | 19 ++-- inst/doc/Encrypting-and-decrypting-text.Rmd | 6 + inst/doc/Encrypting-and-decrypting-text.html | 115 +++++++++++++++++---------- tests/testthat/test-caesar-cipher.R | 5 + tests/testthat/test-errors-silent-stop.R | 55 ++++-------- tests/testthat/test-seed-cipher.R | 29 ++++-- vignettes/Encrypting-and-decrypting-text.Rmd | 6 + 14 files changed, 187 insertions(+), 141 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-03-02 1.4.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-06-17 0.1-4
2013-01-17 0.1-3
2013-01-15 0.1-2
2009-06-14 0.0-2
2009-02-23 0.0-1.1
2008-04-20 0.0-1
Title: Analysis of Simulation Studies Including Monte Carlo Error
Description: Summarise results from simulation studies and compute Monte Carlo
standard errors of commonly used summary statistics. This package is modelled
on the 'simsum' user-written command in 'Stata' (White I.R., 2010
<https://www.stata-journal.com/article.html?article=st0200>), further extending
it with additional functionality.
Author: Alessandro Gasparini [aut, cre]
(<https://orcid.org/0000-0002-8319-7624>),
Ian R. White [aut]
Maintainer: Alessandro Gasparini <alessandro.gasparini@ki.se>
Diff between rsimsum versions 0.9.0 dated 2020-04-15 and 0.9.1 dated 2020-09-03
DESCRIPTION | 10 MD5 | 45 +- NEWS.md | 10 R/print.multisimsum.R | 15 R/print.simsum.R | 10 R/rsimsum-package.R | 2 R/simsum.R | 2 README.md | 319 +++++++--------- build/partial.rdb |binary build/vignette.rds |binary inst/doc/A-introduction.Rmd | 4 inst/doc/A-introduction.html | 756 +++++++++++++++++++-------------------- inst/doc/B-relhaz.html | 624 ++++++++++++++++---------------- inst/doc/C-plotting.html | 382 ++++++++++--------- inst/doc/D-nlp.html | 60 +-- inst/doc/E-custom-inputs.html | 408 ++++++++++----------- inst/doc/F-rsimsumtidyverse.html | 64 +-- man/figures/hex.png |binary man/print.multisimsum.Rd | 5 man/print.simsum.Rd | 4 man/rsimsum.Rd | 2 man/simsum.Rd | 2 tests/testthat/test-#28.R |only vignettes/A-introduction.Rmd | 4 24 files changed, 1381 insertions(+), 1347 deletions(-)
Title: Interface to 'Zenodo' REST API
Description: Provides an Interface to 'Zenodo' (<https://zenodo.org>) REST API,
including management of depositions, attribution of DOIs by 'Zenodo' and
upload of files.
Author: Emmanuel Blondel [aut, cre] (<https://orcid.org/0000-0002-5870-5762>),
Julien Barde [ctb] (<https://orcid.org/0000-0002-3519-6141>),
Stephen Eglen [ctb] (<https://orcid.org/0000-0001-8607-8025>),
Hans Van Calster [ctb] (<https://orcid.org/0000-0001-8595-8426>),
Floris Vanderhaeghe [ctb] (<https://orcid.org/0000-0002-6378-6229>)
Maintainer: Emmanuel Blondel <emmanuel.blondel1@gmail.com>
Diff between zen4R versions 0.4 dated 2020-09-02 and 0.4-1 dated 2020-09-03
DESCRIPTION | 8 +-- MD5 | 16 +++--- NEWS.md | 6 ++ R/ZenodoManager.R | 121 +++++++++++++++++++++++++++++---------------------- R/zen4R.R | 4 - README.md | 2 man/ZenodoManager.Rd | 5 +- man/zen4R.Rd | 4 - tests/test-all.R | 3 - 9 files changed, 99 insertions(+), 70 deletions(-)
More information about SphereOptimize at CRAN
Permanent link
Title: Small Area Estimation with Measurement Error
Description: A set of functions and datasets implementation of small area estimation when auxiliary variable is measured with error. These functions provide a empirical best linear unbiased prediction (EBLUP) estimator and mean squared error (MSE) estimator of the EBLUP. These models were developed by Ybarra and Lohr (2008) <doi:10.1093/biomet/asn048>.
Author: Muhammad Rifqi Mubarak [aut, cre],
Azka Ubaidillah [aut]
Maintainer: Muhammad Rifqi Mubarak <16.9304@stis.ac.id>
Diff between saeME versions 1.2 dated 2020-08-30 and 1.2.1 dated 2020-09-03
DESCRIPTION | 6 +- MD5 | 32 +++++++-------- R/FHme.R | 34 ++++++++-------- R/FHme_nonsamples.R | 99 +++++++++++++++++++++++++------------------------ R/dataME.R | 11 ++--- R/datamix.R | 19 ++++----- R/mse_FHme.R | 30 +++++++------- R/nonsample.R | 13 +++--- data/dataME.rda |binary data/datamix.rda |binary data/nonsample.rda |binary man/FHme.Rd | 33 +++++++++++----- man/FHme_nonsamples.Rd | 43 +++++++++++++++------ man/dataME.Rd | 11 ++--- man/datamix.Rd | 19 ++++----- man/mse_FHme.Rd | 18 +++++++- man/nonsample.Rd | 13 +++--- 17 files changed, 220 insertions(+), 161 deletions(-)
Title: Fast Functions for Prime Numbers
Description: Fast functions for dealing with prime numbers, such as testing
whether a number is prime and generating a sequence prime numbers.
Additional functions include finding prime factors and Ruth-Aaron pairs,
finding next and previous prime numbers in the series, finding or estimating
the nth prime, estimating the number of primes less than or equal to an
arbitrary number, computing primorials, prime k-tuples (e.g., twin primes),
finding the greatest common divisor and smallest (least) common multiple,
testing whether two numbers are coprime, and computing Euler's totient
function. Most functions are vectorized for speed and convenience.
Author: Os Keyes [aut, cre],
Paul Egeler [aut] (<https://orcid.org/0000-0001-6948-9498>)
Maintainer: Os Keyes <ironholds@gmail.com>
Diff between primes versions 1.0.0 dated 2020-07-28 and 1.1.0 dated 2020-09-03
DESCRIPTION | 29 ++++++++------ LICENSE | 2 - MD5 | 36 ++++++++++-------- NAMESPACE | 4 ++ R/RcppExports.R | 49 ++++++++++++++++++++++++ R/phi.R |only R/primorial.R | 2 + README.md | 13 ++++-- man/gcd.Rd |only man/phi.Rd |only man/primorial.Rd | 3 + src/RcppExports.cpp | 72 +++++++++++++++++++++++++++++++----- src/gcd.cpp |only src/is_prime.cpp | 34 +++++++---------- src/next_prime.cpp | 14 +++---- src/nth_prime.cpp | 13 ++---- src/prime_factors.cpp | 15 ++++--- src/primes.h | 16 +++++--- src/sieve.cpp | 19 ++++++--- tests/testthat/test_gcd.R |only tests/testthat/test_phi.R |only tests/testthat/test_prime_factors.R | 1 22 files changed, 224 insertions(+), 98 deletions(-)
Title: Pluralize Phrases
Description: Converts English phrases to singular or plural form
based on the length of an associated vector. Contains helper
functions to create natural language lists from vectors and to include
the length of a vector in natural language.
Author: Alexander Rossell Hayes [aut, cre, cph]
Maintainer: Alexander Rossell Hayes <alexander@rossellhayes.com>
Diff between plu versions 0.1.0 dated 2020-06-09 and 0.1.1 dated 2020-09-03
DESCRIPTION | 23 +++++++++-------------- MD5 | 29 ++++++++++++++++------------- NAMESPACE | 16 ++++++++-------- NEWS.md | 10 ++++++++++ R/plu-package.R |only R/plu_ral.R | 4 ++-- R/plu_ralize.R | 39 +++++++++++++-------------------------- R/plu_stick.R | 3 --- R/sysdata.rda |binary README.md | 22 +++++++++++++++------- inst |only man/plu-package.Rd |only man/plu_ral.Rd | 8 ++++---- man/plu_ralize.Rd | 17 ++++------------- man/plu_stick.Rd | 4 ---- tests/testthat/test-plu_ral.R | 5 +++++ tests/testthat/test-plu_ralize.R | 3 +++ 17 files changed, 89 insertions(+), 94 deletions(-)
Title: KMunicate-Style Kaplan–Meier Plots
Description: Produce Kaplan–Meier plots in the style recommended following the KMunicate
study by Morris et al. (2019) <doi:10.1136/bmjopen-2019-030215>. The KMunicate style
consists of Kaplan-Meier curves with confidence intervals to quantify uncertainty and
an extended risk table (per treatment arm) depicting the number of study subjects at
risk, events, and censored observations over time. The resulting plots are built using
'ggplot2' and can be further customised to a certain extent, including themes, fonts, and
colour scales.
Author: Alessandro Gasparini [aut, cre, cph]
(<https://orcid.org/0000-0002-8319-7624>)
Maintainer: Alessandro Gasparini <alessandro.gasparini@ki.se>
Diff between KMunicate versions 0.0.2 dated 2020-08-03 and 0.1.0 dated 2020-09-03
DESCRIPTION | 6 ++--- MD5 | 33 ++++++++++++++-------------- NEWS.md | 9 +++++++ R/KMunicate.R | 30 +++++++++++++++++++------ README.md | 20 ++++++++++++++++ build/partial.rdb |binary inst/doc/KMunicate.html | 18 +++++++-------- man/KMunicate.Rd | 13 +++++++++-- man/figures/README-brcancer-1.png |binary man/figures/README-brcancer-KMunicate-1.png |binary man/figures/README-brcancer-NULL-1.png |binary man/figures/README-brcancer-reverse-1.png |only man/figures/README-brcancer-survfit-1.png |binary man/figures/README-cancer-1.png |binary man/figures/README-cancer-single-1.png |binary man/figures/README-cancer-single-ff-1.png |binary tests/testthat/test-checks.R | 24 ++++++++++++++++++++ tests/testthat/test-output.R | 4 +++ 18 files changed, 119 insertions(+), 38 deletions(-)
Title: Detrend Images
Description: Detrend fluorescence microscopy image series for
fluorescence fluctuation and correlation spectroscopy ('FCS' and
'FFS') analysis. This package contains functionality published in a
2016 paper <doi:10.1093/bioinformatics/btx434> but it has been
extended since then with the Robin Hood algorithm and thus contains
unpublished work.
Author: Rory Nolan [aut, cre] (<https://orcid.org/0000-0002-5239-4043>),
Luis Alvarez [ctb, cph] (<https://orcid.org/0000-0003-1316-1906>),
Sergi Padilla-Parra [ctb, ths, cph]
(<https://orcid.org/0000-0002-8010-9481>)
Maintainer: Rory Nolan <rorynoolan@gmail.com>
Diff between detrendr versions 0.6.8 dated 2020-08-03 and 0.6.9 dated 2020-09-03
DESCRIPTION | 12 +++++------ MD5 | 20 +++++++++---------- NEWS.md | 6 +++++ R/best_swaps.R | 5 ++-- R/detrend.R | 5 ++-- README.md | 8 +++---- inst/doc/batch-mode.html | 4 +-- inst/doc/single-images.html | 6 ++--- tests/testthat.R | 2 - tests/testthat/test-best_params.R | 2 - tests/testthat/test-dir-detrend.R | 40 +++++++++++++++++++++++++++----------- 11 files changed, 68 insertions(+), 42 deletions(-)
Title: Methods for Detecting Safety Signals in Clinical Trials Using
Body-Systems (System Organ Classes)
Description: Methods for detecting safety signals in clinical trials using groupings of adverse events by body-system or system organ class. This work was supported by the Engineering and Physical Sciences Research Council (UK) (EPSRC) [award reference 1521741] and Frontier Science (Scotland) Ltd. The package title c212 is in reference to the original Engineering and Physical Sciences Research Council (UK) funded project which was named CASE 2/12.
Author: Raymond Carragher [aut, cre] (<https://orcid.org/0000-0002-0120-625X>)
Maintainer: Raymond Carragher <rcarragh@gmail.com>
Diff between c212 versions 0.95 dated 2019-05-14 and 0.97 dated 2020-09-03
DESCRIPTION | 18 ++- MD5 | 74 ++++++------ NAMESPACE | 5 R/c212.1a.interim.R |only R/c212.BB.interim.R |only R/c212.err.cntrl.R |only R/c212.params.R | 204 ++++++++++++++++++++++++++++++++++ man/c212.1a.interim.rd |only man/c212.1a.rd | 14 +- man/c212.BB.interim.rd |only man/c212.BB.rd | 17 +- man/c212.FDR.data.rd | 7 - man/c212.Package.rd | 6 - man/c212.bin.test.rd | 18 +-- man/c212.convergence.diag.rd | 7 - man/c212.err.cntrl.rd |only man/c212.fisher.test.rd | 4 man/c212.gen.initial.values.rd | 8 + man/c212.global.sim.params.rd |only man/c212.hyper.params.rd |only man/c212.interim.1a.hier2.rd | 15 +- man/c212.interim.1a.hier3.rd | 16 +- man/c212.interim.BB.hier2.rd | 16 +- man/c212.interim.BB.hier3.rd | 18 +-- man/c212.interim.MLE.rd | 7 - man/c212.monitor.samples.rd | 12 ++ man/c212.plot.eot.data.rd | 2 man/c212.plot.interim.data.rd | 2 man/c212.pointmass.weights.rd | 13 ++ man/c212.print.convergence.summary.rd | 8 + man/c212.print.summary.stats.rd | 12 +- man/c212.ptheta.rd | 7 + man/c212.sim.control.params.rd | 15 ++ man/c212.summary.stats.rd | 7 - man/c212.trial.data.rd | 4 man/c212.trial.interval.data1.rd | 2 man/c212.trial.interval.data2.rd | 2 man/c212BH.adjust.pvals.rd | 4 man/c212BH.rd | 38 ------ man/c212GBH.rd | 3 man/c212LSL.rd | 18 ++- man/c212TST.rd | 18 ++- 42 files changed, 456 insertions(+), 165 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-05-18 4.3-4
2015-02-03 4.3-2
2013-07-03 4.2-7
2012-10-10 4.2-0
2012-02-15 4.1-1
2011-05-02 4.0-5
2010-10-15 4.0-4
2010-05-22 4.0-0
2009-11-22 3.1-0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-05-18 4.3-5
2015-07-28 4.3-2
2015-02-04 4.3-1
2014-01-18 4.2-7
2012-02-21 4.1-0
2010-10-15 4.0-4
2010-05-22 4.0-0
2009-11-22 3.1-0
2009-10-14 3.0-1
2009-07-21 3.0-0
2009-04-03 2.0-0
2008-06-06 1.9-0
2007-10-03 1.7-0
2007-05-02 1.6-0
Title: Body Mass Estimation Equations for Vertebrates
Description: Estimation equations are from a variety of sources and associated error estimation.
Author: Nicolas E. Campione
Maintainer: Nicolas E. Campione <ncampion@une.edu.au>
Diff between MASSTIMATE versions 1.4 dated 2019-12-11 and 2.0 dated 2020-09-03
MASSTIMATE-1.4/MASSTIMATE/data/dinos.csv.gz |only MASSTIMATE-1.4/MASSTIMATE/data/dinosbip.csv.gz |only MASSTIMATE-2.0/MASSTIMATE/DESCRIPTION | 12 +- MASSTIMATE-2.0/MASSTIMATE/MD5 | 42 ++++++--- MASSTIMATE-2.0/MASSTIMATE/NAMESPACE | 7 + MASSTIMATE-2.0/MASSTIMATE/R/CF2004.R | 70 ++++++++++++++- MASSTIMATE-2.0/MASSTIMATE/R/MASSunite.R |only MASSTIMATE-2.0/MASSTIMATE/R/MCF2004.R | 34 ++++++- MASSTIMATE-2.0/MASSTIMATE/R/OH2012.R |only MASSTIMATE-2.0/MASSTIMATE/R/QE.R | 90 +++++++++++--------- MASSTIMATE-2.0/MASSTIMATE/R/cQE.R | 88 +++++++++++-------- MASSTIMATE-2.0/MASSTIMATE/R/mod_OLS.R |only MASSTIMATE-2.0/MASSTIMATE/R/mod_QUAD.R |only MASSTIMATE-2.0/MASSTIMATE/README.md | 2 MASSTIMATE-2.0/MASSTIMATE/data/dino_comparisons.csv |only MASSTIMATE-2.0/MASSTIMATE/data/dino_comparisons.rda |only MASSTIMATE-2.0/MASSTIMATE/data/dinos.csv |only MASSTIMATE-2.0/MASSTIMATE/data/dinosbip.csv |only MASSTIMATE-2.0/MASSTIMATE/data/extants.csv |only MASSTIMATE-2.0/MASSTIMATE/data/extants.rda |only MASSTIMATE-2.0/MASSTIMATE/man/CF2004.Rd | 19 ++-- MASSTIMATE-2.0/MASSTIMATE/man/MASSTIMATE-package.Rd | 8 + MASSTIMATE-2.0/MASSTIMATE/man/MASSunite.Rd |only MASSTIMATE-2.0/MASSTIMATE/man/MCF2004.Rd | 14 ++- MASSTIMATE-2.0/MASSTIMATE/man/OH2012.Rd |only MASSTIMATE-2.0/MASSTIMATE/man/QE.Rd | 10 +- MASSTIMATE-2.0/MASSTIMATE/man/cQE.Rd | 8 + MASSTIMATE-2.0/MASSTIMATE/man/dino_comparisons.Rd |only MASSTIMATE-2.0/MASSTIMATE/man/extants.Rd |only MASSTIMATE-2.0/MASSTIMATE/man/mod_OLS.Rd |only MASSTIMATE-2.0/MASSTIMATE/man/mod_QUAD.Rd |only 31 files changed, 274 insertions(+), 130 deletions(-)
Title: Implements the O'Connell-Dobson-Schouten Estimators of Agreement
for Multiple Observers
Description: Implements an interface to the legacy Fortran code from O'Connell and Dobson (1984) <DOI:10.2307/2531148>. Implements Fortran 77 code for the methods developed by Schouten (1982) <DOI:10.1111/j.1467-9574.1982.tb00774.x>. Includes estimates of average agreement for each observer and average agreement for each subject.
Author: Mark Clements, Dianne O'Connell
Maintainer: Mark Clements <mark.clements@ki.se>
Diff between magree versions 1.0 dated 2016-12-09 and 1.1 dated 2020-09-03
magree-1.0/magree/data/landis.rda |only magree-1.1/magree/DESCRIPTION | 8 ++++---- magree-1.1/magree/MD5 | 21 +++++++++++---------- magree-1.1/magree/NAMESPACE | 6 +++--- magree-1.1/magree/R/oconnell.R | 4 ++-- magree-1.1/magree/R/schouten.R | 5 +++-- magree-1.1/magree/build/vignette.rds |binary magree-1.1/magree/data/landis.R |only magree-1.1/magree/inst/doc/landis.R | 13 ++++++------- magree-1.1/magree/inst/doc/landis.Rnw | 18 +++++++++--------- magree-1.1/magree/inst/doc/landis.pdf |binary magree-1.1/magree/src/package_init.c |only magree-1.1/magree/vignettes/landis.Rnw | 18 +++++++++--------- 13 files changed, 47 insertions(+), 46 deletions(-)
Title: Decorate a 'ggplot' with Associated Information
Description: For many times, we are not just aligning plots as what 'cowplot' and 'patchwork' did. Users would like to align associated information that requires axes to be exactly matched in subplots, e.g. hierarchical clustering with a heatmap. This package provides utilities to aligns associated subplots to a main plot at different sides (left, right, top and bottom) with axes exactly matched.
Author: Guangchuang Yu [aut, cre, cph]
(<https://orcid.org/0000-0002-6485-8781>)
Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>
Diff between aplot versions 0.0.5 dated 2020-07-22 and 0.0.6 dated 2020-09-03
DESCRIPTION | 6 ++--- MD5 | 13 ++++++----- NAMESPACE | 1 NEWS.md | 5 ++++ R/aplot.R | 2 - R/insertion.R | 63 ++++++++++++++++++++++++++++++++++++++++++++----------- R/utilities.R | 36 ++++++++++++++++++++++++++++++- man/is.ggtree.Rd |only 8 files changed, 103 insertions(+), 23 deletions(-)