Sun, 06 Sep 2020

Package ggDCA updated to version 1.1 with previous version 1.0 dated 2020-08-24

Title: Calculate and Plot Decision Curve
Description: Diagnostic and prognostic models are typically evaluated with measures of accuracy that do not address clinical consequences. Decision-analytic techniques allow assessment of clinical outcomes but often require collection of additional information and may be cumbersome to apply to models that yield a continuous result. Decision curve analysis is a suitable method for evaluating alternative diagnostic and prognostic strategies that has advantages over other commonly used measures and techniques. This method was described by Andrew J. Vickers (2006) <doi:10.1177/0272989X06295361>.
Author: Jing Zhang [aut, cre], Zhi Jin [aut]
Maintainer: Jing Zhang <zj391120@163.com>

Diff between ggDCA versions 1.0 dated 2020-08-24 and 1.1 dated 2020-09-06

 DESCRIPTION |    6 +++---
 MD5         |    4 ++--
 R/dca.cph.R |    5 +++--
 3 files changed, 8 insertions(+), 7 deletions(-)

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Package inline updated to version 0.3.16 with previous version 0.3.15 dated 2018-05-18

Title: Functions to Inline C, C++, Fortran Function Calls from R
Description: Functionality to dynamically define R functions and S4 methods with 'inlined' C, C++ or Fortran code supporting the .C and .Call calling conventions.
Author: Oleg Sklyar, Duncan Murdoch, Mike Smith, Dirk Eddelbuettel, Romain Francois, Karline Soetaert
Maintainer: Dirk Eddelbuettel <edd@debian.org>

Diff between inline versions 0.3.15 dated 2018-05-18 and 0.3.16 dated 2020-09-06

 DESCRIPTION       |    8 ++++----
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 NAMESPACE         |    2 +-
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 README.md         |   29 +++++++++++++++++++----------
 build/partial.rdb |binary
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 7 files changed, 47 insertions(+), 27 deletions(-)

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Package RcppHNSW updated to version 0.3.0 with previous version 0.2.0 dated 2019-09-20

Title: 'Rcpp' Bindings for 'hnswlib', a Library for Approximate Nearest Neighbors
Description: 'Hnswlib' is a C++ library for Approximate Nearest Neighbors. This package provides a minimal R interface by relying on the 'Rcpp' package. See <https://github.com/nmslib/hnswlib> for more on 'hnswlib'. 'hnswlib' is released under Version 2.0 of the Apache License.
Author: James Melville [aut, cre], Aaron Lun [ctb], Samuel Granjeaud [ctb], Dmitriy Selivanov [ctb], Yuxing Liao [ctb]
Maintainer: James Melville <jlmelville@gmail.com>

Diff between RcppHNSW versions 0.2.0 dated 2019-09-20 and 0.3.0 dated 2020-09-06

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 RcppHNSW-0.3.0/RcppHNSW/NEWS.md                           |   26 
 RcppHNSW-0.3.0/RcppHNSW/R/hnsw.R                          |  143 +
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Package paws.common updated to version 0.3.4 with previous version 0.3.3 dated 2020-07-19

Title: Paws Low-Level Amazon Web Services API
Description: Functions for making low-level API requests to Amazon Web Services <https://aws.amazon.com>. The functions handle building, signing, and sending requests, and receiving responses. They are designed to help build higher-level interfaces to individual services, such as Simple Storage Service (S3).
Author: David Kretch [aut, cre], Adam Banker [aut], Amazon.com, Inc. [cph]
Maintainer: David Kretch <david.kretch@gmail.com>

Diff between paws.common versions 0.3.3 dated 2020-07-19 and 0.3.4 dated 2020-09-06

 DESCRIPTION                     |    6 +++---
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Package misc3d updated to version 0.9-0 with previous version 0.8-4 dated 2013-01-25

Title: Miscellaneous 3D Plots
Description: A collection of miscellaneous 3d plots, including isosurfaces.
Author: Dai Feng and Luke Tierney
Maintainer: Luke Tierney <luke-tierney@uiowa.edu>

Diff between misc3d versions 0.8-4 dated 2013-01-25 and 0.9-0 dated 2020-09-06

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Package eSDM updated to version 0.3.5 with previous version 0.3.4 dated 2020-04-26

Title: Ensemble Tool for Predictions from Species Distribution Models
Description: A tool which allows users to create and evaluate ensembles of species distribution model (SDM) predictions. Functionality is offered through R functions or a GUI (R Shiny app). This tool can assist users in identifying spatial uncertainties and making informed conservation and management decisions. The package is further described in Woodman et al (2019) <doi:10.1111/2041-210X.13283>.
Author: Sam Woodman [aut, cre] (<https://orcid.org/0000-0001-6071-8186>)
Maintainer: Sam Woodman <sam.woodman@noaa.gov>

Diff between eSDM versions 0.3.4 dated 2020-04-26 and 0.3.5 dated 2020-09-06

 DESCRIPTION                                                              |   14 
 MD5                                                                      |  204 
 NAMESPACE                                                                |   98 
 NEWS.md                                                                  |   91 
 R/data.R                                                                 |  136 
 R/eSDM-internal.R                                                        |  250 -
 R/ensemble_create.R                                                      |  406 -
 R/ensemble_rescale.R                                                     |  318 -
 R/evaluation_metrics.R                                                   |    4 
 R/model_abundance.R                                                      |  118 
 R/overlay_sdm.R                                                          |  476 +-
 R/pts2poly_centroids.R                                                   |  164 
 R/pts2poly_vertices.R                                                    |  122 
 build/vignette.rds                                                       |binary
 inst/CITATION                                                            |   40 
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 inst/extdata/README.txt                                                  |   90 
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 inst/shiny/server_other/server_reactiveValues.R                          |  308 -
 inst/shiny/server_other/server_render.R                                  | 1092 ++---
 inst/shiny/server_other/server_roadmap_download.R                        |  144 
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 inst/shiny/server_other/server_workspace.R                               |  392 -
 inst/shiny/ui_files/ui_0_roadmap.R                                       |  348 -
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 inst/shiny/ui_files/ui_6_export.R                                        |  284 -
 inst/shiny/ui_files/ui_7_manual.R                                        |   54 
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 inst/shiny/ui_files/ui_funcs.R                                           |  160 
 inst/shiny/www/eSDM_manual.pdf                                           |binary
 man/eSDM-package.Rd                                                      |   68 
 man/eSDM_GUI.Rd                                                          |   38 
 man/ensemble_create.Rd                                                   |  144 
 man/ensemble_rescale.Rd                                                  |  124 
 man/evaluation_metrics.Rd                                                |   90 
 man/gshhg.l.L16.Rd                                                       |   40 
 man/model_abundance.Rd                                                   |   84 
 man/overlay_sdm.Rd                                                       |  106 
 man/preds.Rd                                                             |  106 
 man/pts2poly_centroids.Rd                                                |  118 
 man/pts2poly_vertices.Rd                                                 |   92 
 man/validation.data.Rd                                                   |   44 
 tests/testthat.R                                                         |    8 
 tests/testthat/test-ensemble.R                                           |  168 
 tests/testthat/test-internals.R                                          |   76 
 tests/testthat/test-model_abundance.R                                    |   54 
 tests/testthat/test-overlay_sdm.R                                        |   60 
 tests/testthat/test-pts2poly.R                                           |   80 
 vignettes/example-analysis.Rmd                                           | 1096 ++---
 103 files changed, 19735 insertions(+), 19692 deletions(-)

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