Title: Ensemble Methods for Survival Data with Time-Varying Covariates
Description: Implements the conditional inference forest and random survival forest
algorithm to modeling left-truncated right-censored data with time-invariant
covariates, and (left-truncated) right-censored survival data with time-varying
covariates. It also provides functions to tune the parameters and evaluate the
model fit. See Yao et al. (2020) <arXiv:2006.00567>.
Author: Weichi Yao [aut, cre],
Halina Frydman [aut],
Denis Larocque [aut],
Jeffrey S. Simonoff [aut]
Maintainer: Weichi Yao <wy635@stern.nyu.edu>
Diff between LTRCforests versions 0.5.0 dated 2020-07-03 and 0.5.1 dated 2020-09-20
LTRCforests-0.5.0/LTRCforests/R/ltrcrsf.R |only LTRCforests-0.5.0/LTRCforests/R/tune.ltrcrsf.R |only LTRCforests-0.5.0/LTRCforests/man/ltrcrsf.Rd |only LTRCforests-0.5.0/LTRCforests/man/tune.ltrcrsf.Rd |only LTRCforests-0.5.1/LTRCforests/DESCRIPTION | 8 LTRCforests-0.5.1/LTRCforests/MD5 | 42 LTRCforests-0.5.1/LTRCforests/NAMESPACE | 8 LTRCforests-0.5.1/LTRCforests/R/LTRCforests-package.R | 36 LTRCforests-0.5.1/LTRCforests/R/LTRCforests.news.R | 1 LTRCforests-0.5.1/LTRCforests/R/data.utilities.R | 12 LTRCforests-0.5.1/LTRCforests/R/generic.predict.ltrcrfsrc.R | 71 - LTRCforests-0.5.1/LTRCforests/R/ltrccf.R | 2 LTRCforests-0.5.1/LTRCforests/R/ltrcrfsrc.R | 596 +++++------- LTRCforests-0.5.1/LTRCforests/R/ltrcrrf.R |only LTRCforests-0.5.1/LTRCforests/R/predictProb.R | 234 ++-- LTRCforests-0.5.1/LTRCforests/R/print.R | 22 LTRCforests-0.5.1/LTRCforests/R/tune.ltrccf.R | 4 LTRCforests-0.5.1/LTRCforests/R/tune.ltrcrrf.R |only LTRCforests-0.5.1/LTRCforests/man/LTRCforests-package.Rd | 37 LTRCforests-0.5.1/LTRCforests/man/ltrccf.Rd | 2 LTRCforests-0.5.1/LTRCforests/man/ltrcrrf.Rd |only LTRCforests-0.5.1/LTRCforests/man/predictProb.Rd | 14 LTRCforests-0.5.1/LTRCforests/man/print.Rd | 12 LTRCforests-0.5.1/LTRCforests/man/tune.ltrccf.Rd | 4 LTRCforests-0.5.1/LTRCforests/man/tune.ltrcrrf.Rd |only LTRCforests-0.5.1/LTRCforests/src/splitCustom.c | 15 26 files changed, 589 insertions(+), 531 deletions(-)
Title: Dive Analysis and Calibration
Description: Utilities to represent, visualize, filter, analyse, and summarize
time-depth recorder (TDR) data. Miscellaneous functions for
handling location data are also provided.
Author: Sebastian P. Luque <spluque@gmail.com>
Maintainer: Sebastian P. Luque <spluque@gmail.com>
Diff between diveMove versions 1.5.1 dated 2020-09-12 and 1.5.2 dated 2020-09-20
diveMove-1.5.1/diveMove/vignettes/auto |only diveMove-1.5.1/diveMove/vignettes/tcltk.png |only diveMove-1.5.2/diveMove/DESCRIPTION | 10 diveMove-1.5.2/diveMove/MD5 | 19 diveMove-1.5.2/diveMove/NEWS | 6 diveMove-1.5.2/diveMove/inst/doc/diveMove.R | 58 diveMove-1.5.2/diveMove/inst/doc/diveMove.Rmd | 83 diveMove-1.5.2/diveMove/inst/doc/diveMove.html | 1957 -------------- diveMove-1.5.2/diveMove/inst/tinytest/test_calibrations.R | 42 diveMove-1.5.2/diveMove/vignettes/diveMove.Rmd | 83 diveMove-1.5.2/diveMove/vignettes/figs |only 11 files changed, 237 insertions(+), 2021 deletions(-)
Title: Bayesian Dynamic Factor Analysis (DFA) with 'Stan'
Description: Implements Bayesian dynamic factor analysis with 'Stan'. Dynamic
factor analysis is a dimension reduction tool for multivariate time series.
'bayesdfa' extends conventional dynamic factor models in several ways.
First, extreme events may be estimated in the latent trend by modeling
process error with a student-t distribution. Second, autoregressive and
moving average components can be optionally included. Third, the estimated
dynamic factors can be analyzed with hidden Markov models to evaluate
support for latent regimes.
Author: Eric J. Ward [aut, cre],
Sean C. Anderson [aut],
Luis A. Damiano [aut],
Mary E. Hunsicker, [ctb],
Mike A. Litzow [ctb],
Trustees of Columbia University [cph]
Maintainer: Eric J. Ward <eric.ward@noaa.gov>
Diff between bayesdfa versions 0.1.5 dated 2020-09-02 and 0.1.6 dated 2020-09-20
DESCRIPTION | 10 +++++----- MD5 | 16 ++++++++-------- NEWS.md | 4 ++++ R/fit_regimes.R | 4 +++- inst/doc/bayesdfa.R | 22 +++++++++++----------- inst/doc/bayesdfa.Rmd | 6 +++--- inst/doc/bayesdfa.html | 16 ++-------------- tests/testthat/test-fit.R | 30 +++++++++++++++--------------- vignettes/bayesdfa.Rmd | 6 +++--- 9 files changed, 54 insertions(+), 60 deletions(-)
Title: Easy Access to Model Information for Various Model Objects
Description: A tool to provide an easy, intuitive and consistent access to
information contained in various R models, like model formulas, model terms,
information about random effects, data that was used to fit the model or
data from response variables. 'insight' mainly revolves around two types
of functions: Functions that find (the names of) information, starting with
'find_', and functions that get the underlying data, starting with 'get_'.
The package has a consistent syntax and works with many different model
objects, where otherwise functions to access these information are missing.
Author: Daniel Lüdecke [aut, cre] (<https://orcid.org/0000-0002-8895-3206>),
Dominique Makowski [aut, ctb] (<https://orcid.org/0000-0001-5375-9967>),
Indrajeet Patil [aut, ctb] (<https://orcid.org/0000-0003-1995-6531>),
Philip Waggoner [aut, ctb] (<https://orcid.org/0000-0002-7825-7573>)
Maintainer: Daniel Lüdecke <d.luedecke@uke.de>
Diff between insight versions 0.9.5 dated 2020-09-07 and 0.9.6 dated 2020-09-20
DESCRIPTION | 6 - MD5 | 34 +++++------ NAMESPACE | 1 NEWS.md | 15 ++++ R/clean_names.R | 27 +++++++- R/format_bf.R | 40 +++++++++---- R/format_value.R | 4 - R/get_data.R | 7 ++ R/get_parameters.R | 20 ++++++ R/get_priors.R | 25 ++++++-- build/partial.rdb |binary man/clean_names.Rd | 110 +++++++++++++++++++----------------- man/format_bf.Rd | 64 +++++++++++--------- man/get_parameters.Rd | 10 +++ tests/testthat/test-BayesFactorBF.R | 40 ++++++++++++- tests/testthat/test-clean_names.R | 5 + tests/testthat/test-mixed.R | 7 +- tests/testthat/test-namespace.R | 2 18 files changed, 286 insertions(+), 131 deletions(-)
Title: Ensemble of Phalanxes
Description: An ensemble method for the statistical detection of
a rare class in two-class classification problems. The method uses an
ensemble of classifiers where the constituent
models of the ensemble use disjoint subsets (phalanxes) of explanatory
variables. We provide an implementation of the phalanx-formation algorithm.
Please see Tomal et al. (2015) <doi:10.1214/14-AOAS778>,
Tomal et al. (2016) <doi:10.1021/acs.jcim.5b00663>, and
Tomal et al. (2019) <arXiv:1706.06971> for more details.
Author: Jabed Tomal [aut, cre],
Grace Hsu [aut],
William Welch [aut],
Marcia Wang [ctb]
Maintainer: Jabed Tomal <jtomal@tru.ca>
Diff between EPX versions 1.0.2 dated 2020-07-14 and 1.0.3 dated 2020-09-20
DESCRIPTION | 13 +++++++------ MD5 | 36 +++++++++++++++++++++--------------- R/BC_AHR.R | 1 - R/BC_IE.R | 2 +- R/BNhold.R | 2 +- R/BNsample.R | 2 +- R/cvEPX.R | 6 +++--- R/epx.R | 2 +- R/harvest.R | 2 +- R/predictEPX.R | 4 ++-- build |only inst |only man/AHR.Rd | 1 - man/BNhold.Rd | 2 +- man/BNsample.Rd | 2 +- man/IE.Rd | 2 +- man/epx.Rd | 2 +- man/harvest.Rd | 2 +- vignettes |only 19 files changed, 43 insertions(+), 38 deletions(-)
Title: Text Mining using 'dplyr', 'ggplot2', and Other Tidy Tools
Description: Using tidy data principles can make many text mining tasks easier,
more effective, and consistent with tools already in wide use. Much of the
infrastructure needed for text mining with tidy data frames already exists
in packages like 'dplyr', 'broom', 'tidyr', and 'ggplot2'. In this package,
we provide functions and supporting data sets to allow conversion of text
to and from tidy formats, and to switch seamlessly between tidy tools and
existing text mining packages.
Author: Gabriela De Queiroz [ctb],
Colin Fay [ctb] (<https://orcid.org/0000-0001-7343-1846>),
Emil Hvitfeldt [ctb],
Os Keyes [ctb] (<https://orcid.org/0000-0001-5196-609X>),
Kanishka Misra [ctb],
Tim Mastny [ctb],
Jeff Erickson [ctb],
David Robinson [aut],
Julia Silge [aut, cre] (<https://orcid.org/0000-0002-3671-836X>)
Maintainer: Julia Silge <julia.silge@gmail.com>
Diff between tidytext versions 0.2.5 dated 2020-07-11 and 0.2.6 dated 2020-09-20
tidytext-0.2.5/tidytext/inst/doc/topic_modeling.R |only tidytext-0.2.5/tidytext/inst/doc/topic_modeling.Rmd |only tidytext-0.2.5/tidytext/inst/doc/topic_modeling.html |only tidytext-0.2.5/tidytext/vignettes/topic_modeling.Rmd |only tidytext-0.2.6/tidytext/DESCRIPTION | 25 ++++++++++------- tidytext-0.2.6/tidytext/MD5 | 26 +++++++----------- tidytext-0.2.6/tidytext/NEWS.md | 7 ++++ tidytext-0.2.6/tidytext/R/stop_words.R | 2 - tidytext-0.2.6/tidytext/README.md | 7 ++-- tidytext-0.2.6/tidytext/build/vignette.rds |binary tidytext-0.2.6/tidytext/inst/doc/tf_idf.html | 4 +- tidytext-0.2.6/tidytext/inst/doc/tidying_casting.html | 4 +- tidytext-0.2.6/tidytext/inst/doc/tidytext.Rmd | 4 +- tidytext-0.2.6/tidytext/inst/doc/tidytext.html | 12 ++++---- tidytext-0.2.6/tidytext/man/stop_words.Rd | 2 - tidytext-0.2.6/tidytext/vignettes/tidytext.Rmd | 4 +- 16 files changed, 51 insertions(+), 46 deletions(-)
Title: Analysis Of The Interpopulation Difference In Degree of Sexual
Dimorphism Using Summary Statistics
Description: Provides two approaches of comparison; the univariate and the multivariate analysis in two or more populations. Since the main obstacle of performing systematic comparisons in anthropological studies is the absence of raw data, the current package offer a solution for this problem by allowing the use of published summary statistics of metric data (mean, standard deviation and sex specific sample size) as illustrated by the works of Greene, D. L. (1989) <doi:10.1002/ajpa.1330790113> and Konigsberg, L. W. (1991) <doi:10.1002/ajpa.1330840110>.
Author: Bassam A. Abulnoor [aut, cre] (<https://orcid.org/0000-0003-4351-2754>),
MennattAllah H. Attia [aut] (<https://orcid.org/0000-0002-2304-532X>),
Lyle W. Konigsberg [aut] (<https://orcid.org/0000-0003-4052-1575>)
Maintainer: Bassam A. Abulnoor <bas12@fayoum.edu.eg>
Diff between TestDimorph versions 0.3.1 dated 2020-04-23 and 0.3.3 dated 2020-09-20
TestDimorph-0.3.1/TestDimorph/R/anova_es.R |only TestDimorph-0.3.1/TestDimorph/R/cbind_fill.R |only TestDimorph-0.3.1/TestDimorph/R/padjust_n.R |only TestDimorph-0.3.1/TestDimorph/build |only TestDimorph-0.3.1/TestDimorph/man/AccuModel.Rd |only TestDimorph-0.3.1/TestDimorph/man/RawGen.Rd |only TestDimorph-0.3.1/TestDimorph/man/Tg.Rd |only TestDimorph-0.3.1/TestDimorph/man/aovSS.Rd |only TestDimorph-0.3.3/TestDimorph/DESCRIPTION | 29 TestDimorph-0.3.3/TestDimorph/MD5 | 105 + TestDimorph-0.3.3/TestDimorph/NAMESPACE | 51 TestDimorph-0.3.3/TestDimorph/NEWS.md | 7 TestDimorph-0.3.3/TestDimorph/R/AccuModel.R | 355 ++--- TestDimorph-0.3.3/TestDimorph/R/RawGen.R | 409 +----- TestDimorph-0.3.3/TestDimorph/R/TestDimorph-deprecated.R | 12 TestDimorph-0.3.3/TestDimorph/R/Tg.R | 488 ++----- TestDimorph-0.3.3/TestDimorph/R/V_to_R.R |only TestDimorph-0.3.3/TestDimorph/R/accu_model.R |only TestDimorph-0.3.3/TestDimorph/R/aovSS.R | 351 ++--- TestDimorph-0.3.3/TestDimorph/R/aov_ss.R |only TestDimorph-0.3.3/TestDimorph/R/data.R | 173 +- TestDimorph-0.3.3/TestDimorph/R/extract_sum.R | 352 ++--- TestDimorph-0.3.3/TestDimorph/R/helpers.R |only TestDimorph-0.3.3/TestDimorph/R/index_D.R |only TestDimorph-0.3.3/TestDimorph/R/multivariate.R | 639 ++++------ TestDimorph-0.3.3/TestDimorph/R/pMatrix.R | 177 +- TestDimorph-0.3.3/TestDimorph/R/raw_gen.R |only TestDimorph-0.3.3/TestDimorph/R/t_greene.R |only TestDimorph-0.3.3/TestDimorph/R/to_parms.R |only TestDimorph-0.3.3/TestDimorph/R/to_symm_diag.R |only TestDimorph-0.3.3/TestDimorph/R/univariate.R | 339 ++--- TestDimorph-0.3.3/TestDimorph/R/van_Vark.R |only TestDimorph-0.3.3/TestDimorph/man/AccuModel-deprecated.Rd |only TestDimorph-0.3.3/TestDimorph/man/Howells.Rd | 32 TestDimorph-0.3.3/TestDimorph/man/RawGen-deprecated.Rd |only TestDimorph-0.3.3/TestDimorph/man/TestDimorph-deprecated.Rd | 98 + TestDimorph-0.3.3/TestDimorph/man/Tg-deprecated.Rd |only TestDimorph-0.3.3/TestDimorph/man/V_to_R.Rd |only TestDimorph-0.3.3/TestDimorph/man/accu_model.Rd |only TestDimorph-0.3.3/TestDimorph/man/anova_es.Rd | 5 TestDimorph-0.3.3/TestDimorph/man/aovSS-deprecated.Rd |only TestDimorph-0.3.3/TestDimorph/man/aov_ss.Rd |only TestDimorph-0.3.3/TestDimorph/man/baboon.parms_df.Rd | 43 TestDimorph-0.3.3/TestDimorph/man/baboon.parms_list.Rd | 50 TestDimorph-0.3.3/TestDimorph/man/cbind_fill.Rd | 5 TestDimorph-0.3.3/TestDimorph/man/dataframe2list.Rd |only TestDimorph-0.3.3/TestDimorph/man/extract_sum.Rd | 27 TestDimorph-0.3.3/TestDimorph/man/index_D.Rd |only TestDimorph-0.3.3/TestDimorph/man/multi_raw.Rd |only TestDimorph-0.3.3/TestDimorph/man/multivariate.Rd | 27 TestDimorph-0.3.3/TestDimorph/man/pMatrix-deprecated.Rd | 33 TestDimorph-0.3.3/TestDimorph/man/padjust_n.Rd | 5 TestDimorph-0.3.3/TestDimorph/man/raw_gen.Rd |only TestDimorph-0.3.3/TestDimorph/man/t_greene.Rd |only TestDimorph-0.3.3/TestDimorph/man/t_test.Rd |only TestDimorph-0.3.3/TestDimorph/man/to_params.Rd |only TestDimorph-0.3.3/TestDimorph/man/univariate.Rd | 59 TestDimorph-0.3.3/TestDimorph/man/van_Vark.Rd |only TestDimorph-0.3.3/TestDimorph/tests/figs |only TestDimorph-0.3.3/TestDimorph/tests/testthat/test-AccuModel.R | 62 TestDimorph-0.3.3/TestDimorph/tests/testthat/test-RawGen.R | 28 TestDimorph-0.3.3/TestDimorph/tests/testthat/test-Tg.R | 50 TestDimorph-0.3.3/TestDimorph/tests/testthat/test-accu_model.R |only TestDimorph-0.3.3/TestDimorph/tests/testthat/test-aovSS.R | 16 TestDimorph-0.3.3/TestDimorph/tests/testthat/test-aov_ss.R |only TestDimorph-0.3.3/TestDimorph/tests/testthat/test-extract_sum.R | 12 TestDimorph-0.3.3/TestDimorph/tests/testthat/test-multivariate.R | 10 TestDimorph-0.3.3/TestDimorph/tests/testthat/test-pMatrix.R |only TestDimorph-0.3.3/TestDimorph/tests/testthat/test-raw_gen.R |only TestDimorph-0.3.3/TestDimorph/tests/testthat/test-t_greene.R |only TestDimorph-0.3.3/TestDimorph/tests/testthat/test-univariate.R | 8 71 files changed, 1942 insertions(+), 2115 deletions(-)
Title: Adrian Dusa's Miscellaneous
Description: Contains functions used across packages 'QCA', 'DDIwR', and 'venn'.
Interprets and translates, factorizes and negates SOP - Sum of Products
expressions, for both binary and multi-value crisp sets, and extracts information
(set names, set values) from those expressions. Other functions perform various
other checks if possibly numeric (even if all numbers reside in a character vector)
and coerce to numeric, or check if the numbers are whole. It also offers, among
many others, a highly flexible recoding routine.
Author: Adrian Dusa [aut, cre, cph] (<https://orcid.org/0000-0002-3525-9253>)
Maintainer: Adrian Dusa <dusa.adrian@unibuc.ro>
Diff between admisc versions 0.9 dated 2020-09-02 and 0.10 dated 2020-09-20
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/simplify.R | 4 ++-- inst/ChangeLog | 3 +++ man/admisc.package.Rd | 4 ++-- 5 files changed, 15 insertions(+), 12 deletions(-)
Title: Enrichment Analysis Utilizing Active Subnetworks
Description: Enrichment analysis enables researchers to uncover mechanisms
underlying a phenotype. However, conventional methods for enrichment
analysis do not take into account protein-protein interaction information,
resulting in incomplete conclusions. pathfindR is a tool for enrichment
analysis utilizing active subnetworks. The main function identifies active
subnetworks in a protein-protein interaction network using a user-provided
list of genes and associated p values. It then performs enrichment analyses
on the identified subnetworks, identifying enriched terms (i.e. pathways or,
more broadly, gene sets) that possibly underlie the phenotype of interest.
pathfindR also offers functionalities to cluster the enriched terms and
identify representative terms in each cluster, to score the enriched terms
per sample and to visualize analysis results. The enrichment, clustering and
other methods implemented in pathfindR are described in detail in
Ulgen E, Ozisik O, Sezerman OU. 2019. pathfindR: An R Package for
Comprehensive Identification of Enriched Pathways in Omics Data Through
Active Subnetworks. Front. Genet. <doi:10.3389/fgene.2019.00858>.
Author: Ege Ulgen [cre, cph] (<https://orcid.org/0000-0003-2090-3621>),
Ozan Ozisik [aut] (<https://orcid.org/0000-0001-5980-8002>)
Maintainer: Ege Ulgen <egeulgen@gmail.com>
Diff between pathfindR versions 1.5.0 dated 2020-06-06 and 1.5.1 dated 2020-09-20
DESCRIPTION | 6 +- MD5 | 28 +++++----- NEWS.md | 8 ++ R/comparison_functions.R | 31 +++++------ R/core_functions.R | 4 - R/zzz.R | 10 ++- build/vignette.rds |binary inst/doc/comparing_results.html | 20 ++++++- inst/doc/intro_vignette.html | 97 ++++++++++++++++++++++++++++------- inst/doc/manual_execution.html | 20 ++++++- inst/doc/non_hs_analysis.html | 30 ++++++++++ inst/doc/obtain_data.html | 20 ++++++- inst/doc/visualization_vignette.html | 20 ++++++- inst/rmd/conversion_table.Rmd | 2 tests/testthat/test-zzz.R | 9 ++- 15 files changed, 238 insertions(+), 67 deletions(-)
Title: Bayesian Treed Gaussian Process Models
Description: Bayesian nonstationary, semiparametric nonlinear regression
and design by treed Gaussian processes (GPs) with jumps to the limiting
linear model (LLM). Special cases also implemented include Bayesian
linear models, CART, treed linear models, stationary separable and
isotropic GPs, and GP single-index models. Provides 1-d and 2-d plotting functions
(with projection and slice capabilities) and tree drawing, designed for
visualization of tgp-class output. Sensitivity analysis and
multi-resolution models are supported. Sequential experimental
design and adaptive sampling functions are also provided, including ALM,
ALC, and expected improvement. The latter supports derivative-free
optimization of noisy black-box functions.
Author: Robert B. Gramacy <rbg@vt.edu> and Matt A. Taddy <mataddy@amazon.com>
Maintainer: Robert B. Gramacy <rbg@vt.edu>
Diff between tgp versions 2.4-16 dated 2020-09-07 and 2.4-17 dated 2020-09-20
ChangeLog | 7 +++++++ DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- inst/doc/tgp.pdf |binary inst/doc/tgp2.pdf |binary src/Makevars | 2 +- src/init.c | 6 +++--- src/sim.cc | 7 +++++-- src/twovar.cc | 4 ++-- 9 files changed, 30 insertions(+), 20 deletions(-)
Title: 'spdlog' C++ Header Library for Logging
Description: The mature and widely-used C++ logging library 'spdlog' provides many desirable
features. This package bundles these header files for easy use by R packages via a simple
'LinkingTo:' inclusion.
Author: Dirk Eddelbuettel [aut, cre, cph],
Gabi Melman [aut, cph] (Author of included 'spdlog'),
Victor Zverovic [ctb, cph] (Author of included 'fmt' library)
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppSpdlog versions 0.0.1 dated 2020-09-16 and 0.0.2 dated 2020-09-20
ChangeLog | 11 DESCRIPTION | 8 MD5 | 53 R/RcppExports.R | 3 README.md | 17 build/partial.rdb |binary inst/NEWS.Rd | 8 inst/include/spdlog/cfg/argv.h | 4 inst/include/spdlog/cfg/env.h | 2 inst/include/spdlog/common.h | 1 inst/include/spdlog/details/fmt_helper.h | 6 inst/include/spdlog/fmt/bundled/chrono.h | 128 - inst/include/spdlog/fmt/bundled/color.h | 72 inst/include/spdlog/fmt/bundled/compile.h | 276 ++- inst/include/spdlog/fmt/bundled/core.h | 976 ++++++----- inst/include/spdlog/fmt/bundled/format-inl.h | 178 +- inst/include/spdlog/fmt/bundled/format.h | 2243 +++++++++++++-------------- inst/include/spdlog/fmt/bundled/locale.h | 32 inst/include/spdlog/fmt/bundled/os.h |only inst/include/spdlog/fmt/bundled/ostream.h | 21 inst/include/spdlog/fmt/bundled/printf.h | 147 + inst/include/spdlog/fmt/bundled/ranges.h | 71 inst/include/spdlog/fmt/chrono.h |only inst/include/spdlog/fmt/fmt.h | 2 inst/include/spdlog/pattern_formatter-inl.h | 21 inst/include/spdlog/stopwatch.h |only inst/include/spdlog/version.h | 2 man/exampleRsink.Rd | 3 src/exampleRsink.cpp | 8 29 files changed, 2329 insertions(+), 1964 deletions(-)
Title: R Interface to 'Bloomberg Data License'
Description: R interface to access prices and market data with the
'Bloomberg Data License' service from
<https://www.bloomberg.com/professional/product/data-license/>.
As a prerequisite, a valid Data License from 'Bloomberg' is needed
together with the corresponding SFTP credentials and whitelisting
of the IP from which accessing the service.
This software and its author are in no way affiliated,
endorsed, or approved by 'Bloomberg' or any of its affiliates.
'Bloomberg' is a registered trademark.
Author: Emanuele Guidotti [aut, cre] (<https://orcid.org/0000-0002-8961-6623>)
Maintainer: Emanuele Guidotti <emanuele.guidotti@unine.ch>
Diff between RblDataLicense versions 0.2.2 dated 2020-01-08 and 0.2.3 dated 2020-09-20
DESCRIPTION | 14 -- MD5 | 26 +-- NEWS.md | 4 R/core.R | 2 README.md | 24 --- build/vignette.rds |binary inst/CITATION | 3 inst/doc/RblDataLicense.Rmd | 38 ----- inst/doc/RblDataLicense.html | 291 ++++--------------------------------------- man/RblConnect.Rd | 10 + man/RblParse.Rd | 3 man/RblQuery.Rd | 22 ++- man/RblUpload.Rd | 7 - vignettes/RblDataLicense.Rmd | 38 ----- 14 files changed, 98 insertions(+), 384 deletions(-)
More information about RblDataLicense at CRAN
Permanent link
Title: Quantile Regression Index Score
Description: The QRI_func() function performs quantile regression analysis using age and sex as predictors to calculate the Quantile Regression Index (QRI) score for each individual’s regional brain imaging metrics and then averages across the regional scores to generate an average tissue specific score for each subject. The QRI_plot() is used to plot QRI and generate the normative curves for individual measurements.
Author: Peter Kochunov [aut],
Si Gao [aut, cre],
Meghann Ryan [aut]
Maintainer: Si Gao <sgao@som.umaryland.edu>
Diff between QRIpkg versions 0.1.0 dated 2020-08-26 and 0.2.0 dated 2020-09-20
DESCRIPTION | 12 ++++++------ MD5 | 10 ++++++---- NAMESPACE | 1 + R/QRI_func.R | 42 ++++++++++++++---------------------------- R/QRI_plot.R |only man/QRI_func.Rd | 29 ++++++++++++++--------------- man/QRI_plot.Rd |only 7 files changed, 41 insertions(+), 53 deletions(-)
Title: Analysis of Factorial Experiments
Description: Convenience functions for analyzing factorial experiments using ANOVA or
mixed models. aov_ez(), aov_car(), and aov_4() allow specification of
between, within (i.e., repeated-measures), or mixed (i.e., split-plot)
ANOVAs for data in long format (i.e., one observation per row),
automatically aggregating multiple observations per individual and cell
of the design. mixed() fits mixed models using lme4::lmer() and computes
p-values for all fixed effects using either Kenward-Roger or Satterthwaite
approximation for degrees of freedom (LMM only), parametric bootstrap
(LMMs and GLMMs), or likelihood ratio tests (LMMs and GLMMs).
afex_plot() provides a high-level interface for interaction or one-way
plots using ggplot2, combining raw data and model estimates. afex uses
type 3 sums of squares as default (imitating commercial statistical software).
Author: Henrik Singmann [aut, cre] (<https://orcid.org/0000-0002-4842-3657>),
Ben Bolker [aut],
Jake Westfall [aut],
Frederik Aust [aut] (<https://orcid.org/0000-0003-4900-788X>),
Mattan S. Ben-Shachar [aut],
Søren Højsgaard [ctb],
John Fox [ctb],
Michael A. Lawrence [ctb],
Ulf Mertens [ctb],
Jonathon Love [ctb],
Russell Lenth [ctb],
Rune Haubo Bojesen Christensen [ctb]
Maintainer: Henrik Singmann <singmann@gmail.com>
Diff between afex versions 0.27-2 dated 2020-03-28 and 0.28-0 dated 2020-09-20
afex-0.27-2/afex/inst/extdata/freeman_models.rda |only afex-0.27-2/afex/inst/extdata/freeman_reduced_model.rda |only afex-0.28-0/afex/DESCRIPTION | 10 afex-0.28-0/afex/MD5 | 213 afex-0.28-0/afex/NAMESPACE | 167 afex-0.28-0/afex/NEWS | 1836 ++++--- afex-0.28-0/afex/R/afex-package.R | 20 afex-0.28-0/afex/R/afex_plot.R | 1853 +++---- afex-0.28-0/afex/R/afex_plot_plotting_functions.R |only afex-0.28-0/afex/R/afex_plot_utils.R | 612 +- afex-0.28-0/afex/R/allFit.R | 252 - afex-0.28-0/afex/R/aov_car.R | 1653 +++---- afex-0.28-0/afex/R/compare.2.vectors.R | 298 - afex-0.28-0/afex/R/deprecated.R | 68 afex-0.28-0/afex/R/ems.R | 214 afex-0.28-0/afex/R/fhch2010-data.R | 70 afex-0.28-0/afex/R/helpers.R | 194 afex-0.28-0/afex/R/ks2013.3-data.R | 56 afex-0.28-0/afex/R/lmerTest_utils.R | 140 afex-0.28-0/afex/R/md_12.1-data.R | 90 afex-0.28-0/afex/R/md_15.1-data.R | 122 afex-0.28-0/afex/R/md_16.1-data.R | 68 afex-0.28-0/afex/R/md_16.4-data.R | 68 afex-0.28-0/afex/R/methods.afex_aov.R | 536 +- afex-0.28-0/afex/R/mixed.R | 2335 ++++------ afex-0.28-0/afex/R/nice.R | 698 +- afex-0.28-0/afex/R/obk.long-data.R | 92 afex-0.28-0/afex/R/reexport.R | 14 afex-0.28-0/afex/R/residuals.R |only afex-0.28-0/afex/R/round_ps.R | 100 afex-0.28-0/afex/R/set_contrasts.R | 88 afex-0.28-0/afex/R/sk2011.1-data.R | 90 afex-0.28-0/afex/R/sk2011.2-data.R | 64 afex-0.28-0/afex/R/stroop-data.R |only afex-0.28-0/afex/R/test_assumption.R | 86 afex-0.28-0/afex/R/utils.R | 219 afex-0.28-0/afex/R/zzz.R | 84 afex-0.28-0/afex/README.md | 1020 ++-- afex-0.28-0/afex/build/partial.rdb |binary afex-0.28-0/afex/build/vignette.rds |binary afex-0.28-0/afex/data/stroop.rda |only afex-0.28-0/afex/inst/doc/afex_analysing_accuracy_data.R |only afex-0.28-0/afex/inst/doc/afex_analysing_accuracy_data.Rmd |only afex-0.28-0/afex/inst/doc/afex_analysing_accuracy_data.html |only afex-0.28-0/afex/inst/doc/afex_anova_example.R | 243 - afex-0.28-0/afex/inst/doc/afex_anova_example.Rmd | 570 +- afex-0.28-0/afex/inst/doc/afex_anova_example.html | 2068 ++++---- afex-0.28-0/afex/inst/doc/afex_mixed_example.R | 450 + afex-0.28-0/afex/inst/doc/afex_mixed_example.Rmd | 786 +-- afex-0.28-0/afex/inst/doc/afex_mixed_example.html | 1513 +++--- afex-0.28-0/afex/inst/doc/afex_plot_introduction.R | 495 +- afex-0.28-0/afex/inst/doc/afex_plot_introduction.Rmd | 841 +-- afex-0.28-0/afex/inst/doc/afex_plot_introduction.html | 1302 +++-- afex-0.28-0/afex/inst/doc/afex_plot_supported_models.R | 532 +- afex-0.28-0/afex/inst/doc/afex_plot_supported_models.Rmd | 786 +-- afex-0.28-0/afex/inst/doc/afex_plot_supported_models.html | 1040 ++-- afex-0.28-0/afex/inst/doc/introduction-mixed-models.pdf |binary afex-0.28-0/afex/inst/doc/introduction-mixed-models.pdf.asis | 12 afex-0.28-0/afex/inst/extdata/output_afex_plot_mixed_vignette.rda |only afex-0.28-0/afex/inst/extdata/output_mixed_vignette.rda |only afex-0.28-0/afex/inst/extdata/outputs_glmm_vignette.rda |only afex-0.28-0/afex/man/afex-package.Rd | 96 afex-0.28-0/afex/man/afex_aov-methods.Rd | 226 afex-0.28-0/afex/man/afex_options.Rd | 168 afex-0.28-0/afex/man/afex_plot.Rd | 1772 +++---- afex-0.28-0/afex/man/all_fit.Rd | 216 afex-0.28-0/afex/man/aov_car.Rd | 1198 ++--- afex-0.28-0/afex/man/compare.2.vectors.Rd | 168 afex-0.28-0/afex/man/deprecated.Rd | 52 afex-0.28-0/afex/man/ems.Rd | 98 afex-0.28-0/afex/man/fhch2010.Rd | 130 afex-0.28-0/afex/man/figures/README-unnamed-chunk-17-1.png |binary afex-0.28-0/afex/man/figures/README-unnamed-chunk-18-1.png |binary afex-0.28-0/afex/man/figures/README-unnamed-chunk-19-1.png |binary afex-0.28-0/afex/man/figures/README-unnamed-chunk-6-1.png |binary afex-0.28-0/afex/man/figures/README-unnamed-chunk-7-1.png |binary afex-0.28-0/afex/man/ks2013.3.Rd | 82 afex-0.28-0/afex/man/md_12.1.Rd | 104 afex-0.28-0/afex/man/md_15.1.Rd | 142 afex-0.28-0/afex/man/md_16.1.Rd | 82 afex-0.28-0/afex/man/md_16.4.Rd | 82 afex-0.28-0/afex/man/mixed.Rd | 1548 +++--- afex-0.28-0/afex/man/nice.Rd | 412 - afex-0.28-0/afex/man/obk.long.Rd | 106 afex-0.28-0/afex/man/reexports.Rd | 32 afex-0.28-0/afex/man/residuals.afex_aov.Rd |only afex-0.28-0/afex/man/round_ps.Rd | 100 afex-0.28-0/afex/man/set_sum_contrasts.Rd | 58 afex-0.28-0/afex/man/sk2011.1.Rd | 96 afex-0.28-0/afex/man/sk2011.2.Rd | 148 afex-0.28-0/afex/man/stroop.Rd |only afex-0.28-0/afex/man/test_assumptions.Rd | 108 afex-0.28-0/afex/tests/testthat.R | 8 afex-0.28-0/afex/tests/testthat/test-afex_aov.R | 248 - afex-0.28-0/afex/tests/testthat/test-afex_plot-basics.R | 600 +- afex-0.28-0/afex/tests/testthat/test-afex_plot-bugs.R |only afex-0.28-0/afex/tests/testthat/test-afex_plot-default-support.R | 137 afex-0.28-0/afex/tests/testthat/test-afex_plot-vignette.R | 252 - afex-0.28-0/afex/tests/testthat/test-aov_car-basic.R | 290 - afex-0.28-0/afex/tests/testthat/test-aov_car-bugs.R | 546 +- afex-0.28-0/afex/tests/testthat/test-aov_car-structural.R | 290 - afex-0.28-0/afex/tests/testthat/test-assumption_tests.R | 78 afex-0.28-0/afex/tests/testthat/test-compare_2_vectors.R | 18 afex-0.28-0/afex/tests/testthat/test-emmeans-interface.R | 444 - afex-0.28-0/afex/tests/testthat/test-lmerTest-support.R | 62 afex-0.28-0/afex/tests/testthat/test-mixed-bugs.R | 316 - afex-0.28-0/afex/tests/testthat/test-mixed-effects.R | 58 afex-0.28-0/afex/tests/testthat/test-mixed-mw.R | 96 afex-0.28-0/afex/tests/testthat/test-mixed-structure.R | 844 +-- afex-0.28-0/afex/tests/testthat/test-residuals.R |only afex-0.28-0/afex/vignettes/afex_analysing_accuracy_data.Rmd |only afex-0.28-0/afex/vignettes/afex_anova_example.Rmd | 570 +- afex-0.28-0/afex/vignettes/afex_mixed_example.Rmd | 786 +-- afex-0.28-0/afex/vignettes/afex_plot_introduction.Rmd | 841 +-- afex-0.28-0/afex/vignettes/afex_plot_supported_models.Rmd | 786 +-- afex-0.28-0/afex/vignettes/introduction-mixed-models.pdf.asis | 12 116 files changed, 20115 insertions(+), 18459 deletions(-)
Title: A Tool for Automating Download and Preprocessing of MODIS Land
Products Data
Description: Allows automating the creation of time series of rasters derived
from MODIS Satellite Land Products data. It performs several typical
preprocessing steps such as download, mosaicking, reprojection and resize
of data acquired on a specified time period. All processing parameters
can be set using a user-friendly GUI. Users can select which layers of
the original MODIS HDF files they want to process, which additional
Quality Indicators should be extracted from aggregated MODIS Quality
Assurance layers and, in the case of Surface Reflectance products
, which Spectral Indexes should be computed from the original reflectance
bands. For each output layer, outputs are saved as single-band raster
files corresponding to each available acquisition date. Virtual files
allowing access to the entire time series as a single file are also created.
Command-line execution exploiting a previously saved processing options
file is also possible, allowing to automatically update time series
related to a MODIS product whenever a new image is available.
Author: Lorenzo Busetto [aut, cre] (<https://orcid.org/0000-0001-9634-6038>),
Luigi Ranghetti [aut] (<https://orcid.org/0000-0001-6207-5188>),
Leah Wasser [rev] (Leah Wasser reviewed the package for rOpenSci, see
https://github.com/ropensci/software-review/issues/184),
Jeff Hanson [rev] (Jeff Hanson reviewed the package for rOpenSci, see
https://github.com/ropensci/software-review/issues/184)
Maintainer: Lorenzo Busetto <lbusett@gmail.com>
Diff between MODIStsp versions 2.0.2 dated 2020-09-02 and 2.0.3 dated 2020-09-20
MODIStsp-2.0.2/MODIStsp/inst/ExtData/Previous |only MODIStsp-2.0.3/MODIStsp/DESCRIPTION | 6 MODIStsp-2.0.3/MODIStsp/MD5 | 285 MODIStsp-2.0.3/MODIStsp/NAMESPACE | 154 MODIStsp-2.0.3/MODIStsp/NEWS.md | 943 MODIStsp-2.0.3/MODIStsp/R/MODIStsp-package.R | 64 MODIStsp-2.0.3/MODIStsp/R/MODIStsp.R | 1097 MODIStsp-2.0.3/MODIStsp/R/MODIStsp_GUI.R | 103 MODIStsp-2.0.3/MODIStsp/R/MODIStsp_addindex.R | 426 MODIStsp-2.0.3/MODIStsp/R/MODIStsp_download.R | 396 MODIStsp-2.0.3/MODIStsp/R/MODIStsp_extract.R | 818 MODIStsp-2.0.3/MODIStsp/R/MODIStsp_get_prodlayers.R | 192 MODIStsp-2.0.3/MODIStsp/R/MODIStsp_install_launcher.R | 368 MODIStsp-2.0.3/MODIStsp/R/MODIStsp_process.R | 1210 MODIStsp-2.0.3/MODIStsp/R/MODIStsp_process_QA_bits.R | 160 MODIStsp-2.0.3/MODIStsp/R/MODIStsp_process_bands.R | 1248 MODIStsp-2.0.3/MODIStsp/R/MODIStsp_process_indexes.R | 280 MODIStsp-2.0.3/MODIStsp/R/MODIStsp_read_xml.R | 400 MODIStsp-2.0.3/MODIStsp/R/MODIStsp_resetindexes.R | 104 MODIStsp-2.0.3/MODIStsp/R/bbox_from_file.R | 144 MODIStsp-2.0.3/MODIStsp/R/check_files_existance.R | 198 MODIStsp-2.0.3/MODIStsp/R/check_formula_errors.R | 222 MODIStsp-2.0.3/MODIStsp/R/check_proc_opts.R | 232 MODIStsp-2.0.3/MODIStsp/R/check_projection.R | 288 MODIStsp-2.0.3/MODIStsp/R/get_mod_dates.R | 70 MODIStsp-2.0.3/MODIStsp/R/get_mod_dirs.R | 210 MODIStsp-2.0.3/MODIStsp/R/get_mod_filenames.R | 260 MODIStsp-2.0.3/MODIStsp/R/get_reqbands.R | 150 MODIStsp-2.0.3/MODIStsp/R/get_yeardates.R | 170 MODIStsp-2.0.3/MODIStsp/R/load_prodopts.R | 95 MODIStsp-2.0.3/MODIStsp/R/process_message.R | 24 MODIStsp-2.0.3/MODIStsp/R/reproj_bbox.R | 199 MODIStsp-2.0.3/MODIStsp/R/set_bandind_matrix.R | 120 MODIStsp-2.0.3/MODIStsp/R/shinygui_saveopts.R | 294 MODIStsp-2.0.3/MODIStsp/R/split_nodata_values.R | 216 MODIStsp-2.0.3/MODIStsp/R/tiles_from_bbox.R | 70 MODIStsp-2.0.3/MODIStsp/README.md | 540 MODIStsp-2.0.3/MODIStsp/build/vignette.rds |binary MODIStsp-2.0.3/MODIStsp/inst/CITATION | 38 MODIStsp-2.0.3/MODIStsp/inst/ExtData/MODIStsp_ProdOpts.RData |only MODIStsp-2.0.3/MODIStsp/inst/ExtData/MODIStsp_ProdOpts.xml |25254 +++++----- MODIStsp-2.0.3/MODIStsp/inst/ExtData/MODIStsp_indexes.json |only MODIStsp-2.0.3/MODIStsp/inst/ExtData/mstp_defaults.json |only MODIStsp-2.0.3/MODIStsp/inst/WORDLIST | 454 MODIStsp-2.0.3/MODIStsp/inst/app/MSTP_app.R | 292 MODIStsp-2.0.3/MODIStsp/inst/app/global.R | 34 MODIStsp-2.0.3/MODIStsp/inst/app/srv/mstp_helpmess_srv.R | 852 MODIStsp-2.0.3/MODIStsp/inst/app/srv/mstp_load_srv.R | 198 MODIStsp-2.0.3/MODIStsp/inst/app/srv/mstp_opts_srv.R | 122 MODIStsp-2.0.3/MODIStsp/inst/app/srv/mstp_prds_srv.R | 459 MODIStsp-2.0.3/MODIStsp/inst/app/srv/mstp_save_srv.R | 208 MODIStsp-2.0.3/MODIStsp/inst/app/srv/mstp_spatemp_srv_bbox.R | 136 MODIStsp-2.0.3/MODIStsp/inst/app/srv/mstp_spatemp_srv_draw.R | 180 MODIStsp-2.0.3/MODIStsp/inst/app/srv/mstp_spatemp_srv_file.R | 176 MODIStsp-2.0.3/MODIStsp/inst/app/srv/mstp_spatemp_srv_proj.R | 144 MODIStsp-2.0.3/MODIStsp/inst/app/srv/mstp_spatemp_srv_tiles.R | 244 MODIStsp-2.0.3/MODIStsp/inst/app/ui/mstp_other_ui.R | 394 MODIStsp-2.0.3/MODIStsp/inst/app/ui/mstp_prds_ui.R | 144 MODIStsp-2.0.3/MODIStsp/inst/app/ui/mstp_spatemp_ui.R | 571 MODIStsp-2.0.3/MODIStsp/inst/doc/MODIStsp.R | 356 MODIStsp-2.0.3/MODIStsp/inst/doc/MODIStsp.Rmd | 954 MODIStsp-2.0.3/MODIStsp/inst/doc/MODIStsp.html | 1438 MODIStsp-2.0.3/MODIStsp/inst/testdata/MODIStsp_2017-12-17.json | 74 MODIStsp-2.0.3/MODIStsp/inst/testdata/VI_16Days_500m_v6 |only MODIStsp-2.0.3/MODIStsp/inst/testdata/extract_polys.qpj | 2 MODIStsp-2.0.3/MODIStsp/inst/testdata/test01.json | 80 MODIStsp-2.0.3/MODIStsp/inst/testdata/test01a.json | 80 MODIStsp-2.0.3/MODIStsp/inst/testdata/test02.json | 76 MODIStsp-2.0.3/MODIStsp/inst/testdata/test03.json | 78 MODIStsp-2.0.3/MODIStsp/inst/testdata/test03a.json | 78 MODIStsp-2.0.3/MODIStsp/inst/testdata/test04.json | 76 MODIStsp-2.0.3/MODIStsp/inst/testdata/test04a.json | 76 MODIStsp-2.0.3/MODIStsp/inst/testdata/test04b.json | 74 MODIStsp-2.0.3/MODIStsp/inst/testdata/test04c.json | 76 MODIStsp-2.0.3/MODIStsp/inst/testdata/test05.json | 76 MODIStsp-2.0.3/MODIStsp/inst/testdata/test05a.json | 76 MODIStsp-2.0.3/MODIStsp/inst/testdata/test06.json | 78 MODIStsp-2.0.3/MODIStsp/inst/testdata/test06a.json | 78 MODIStsp-2.0.3/MODIStsp/inst/testdata/test06b.json | 76 MODIStsp-2.0.3/MODIStsp/inst/testdata/test07.json | 78 MODIStsp-2.0.3/MODIStsp/inst/testdata/test07b.json | 78 MODIStsp-2.0.3/MODIStsp/inst/testdata/test_MOD10A2.json | 78 MODIStsp-2.0.3/MODIStsp/inst/testdata/test_MOD13A2.json | 78 MODIStsp-2.0.3/MODIStsp/inst/testdata/test_addindex.json | 74 MODIStsp-2.0.3/MODIStsp/inst/testdata/test_extract.json | 78 MODIStsp-2.0.3/MODIStsp/inst/testdata/test_mask.json | 72 MODIStsp-2.0.3/MODIStsp/inst/testdata/wrong_json.json | 8 MODIStsp-2.0.3/MODIStsp/man/MODIStsp-package.Rd | 68 MODIStsp-2.0.3/MODIStsp/man/MODIStsp.Rd | 642 MODIStsp-2.0.3/MODIStsp/man/MODIStsp_GUI.Rd | 5 MODIStsp-2.0.3/MODIStsp/man/MODIStsp_addindex.Rd | 148 MODIStsp-2.0.3/MODIStsp/man/MODIStsp_download.Rd | 146 MODIStsp-2.0.3/MODIStsp/man/MODIStsp_extract.Rd | 356 MODIStsp-2.0.3/MODIStsp/man/MODIStsp_process.Rd | 114 MODIStsp-2.0.3/MODIStsp/man/MODIStsp_process_QA_bits.Rd | 118 MODIStsp-2.0.3/MODIStsp/man/MODIStsp_process_bands.Rd | 244 MODIStsp-2.0.3/MODIStsp/man/MODIStsp_process_indexes.Rd | 146 MODIStsp-2.0.3/MODIStsp/man/MODIStsp_read_xml.Rd | 68 MODIStsp-2.0.3/MODIStsp/man/MODIStsp_resetindexes.Rd | 106 MODIStsp-2.0.3/MODIStsp/man/MODIStsp_vrt_create.Rd | 174 MODIStsp-2.0.3/MODIStsp/man/bbox_from_file.Rd | 54 MODIStsp-2.0.3/MODIStsp/man/check_files_existence.Rd | 134 MODIStsp-2.0.3/MODIStsp/man/check_projection.Rd | 122 MODIStsp-2.0.3/MODIStsp/man/get_mod_dates.Rd | 62 MODIStsp-2.0.3/MODIStsp/man/get_mod_dirs.Rd | 126 MODIStsp-2.0.3/MODIStsp/man/get_mod_filenames.Rd | 144 MODIStsp-2.0.3/MODIStsp/man/get_reqbands.Rd | 132 MODIStsp-2.0.3/MODIStsp/man/get_yeardates.Rd | 76 MODIStsp-2.0.3/MODIStsp/man/load_prodopts.Rd | 40 MODIStsp-2.0.3/MODIStsp/man/process_message.Rd | 46 MODIStsp-2.0.3/MODIStsp/man/reproj_bbox.Rd | 70 MODIStsp-2.0.3/MODIStsp/man/set_bandind_matrix.Rd | 108 MODIStsp-2.0.3/MODIStsp/man/split_nodata_values.Rd | 154 MODIStsp-2.0.3/MODIStsp/tests/spelling.R | 6 MODIStsp-2.0.3/MODIStsp/tests/spelling.Rout.save | 50 MODIStsp-2.0.3/MODIStsp/tests/testthat.R | 6 MODIStsp-2.0.3/MODIStsp/tests/testthat/test-split_nodata_values.R | 30 MODIStsp-2.0.3/MODIStsp/tests/testthat/test_MODIStsp_00.R | 50 MODIStsp-2.0.3/MODIStsp/tests/testthat/test_MODIStsp_01.R | 110 MODIStsp-2.0.3/MODIStsp/tests/testthat/test_MODIStsp_02.R | 80 MODIStsp-2.0.3/MODIStsp/tests/testthat/test_MODIStsp_03.R | 150 MODIStsp-2.0.3/MODIStsp/tests/testthat/test_MODIStsp_05.R | 60 MODIStsp-2.0.3/MODIStsp/tests/testthat/test_MODIStsp_06.R | 110 MODIStsp-2.0.3/MODIStsp/tests/testthat/test_MODIStsp_07.R | 90 MODIStsp-2.0.3/MODIStsp/tests/testthat/test_MODIStsp_08.R | 22 MODIStsp-2.0.3/MODIStsp/tests/testthat/test_MODIStsp_addindex.R | 114 MODIStsp-2.0.3/MODIStsp/tests/testthat/test_MODIStsp_extract.R | 238 MODIStsp-2.0.3/MODIStsp/tests/testthat/test_MODIStsp_readxml.R | 44 MODIStsp-2.0.3/MODIStsp/tests/testthat/test_MODIStsp_resetindexes.R | 40 MODIStsp-2.0.3/MODIStsp/tests/testthat/test_bbox_from_file.R | 118 MODIStsp-2.0.3/MODIStsp/tests/testthat/test_check_proj4string.R | 76 MODIStsp-2.0.3/MODIStsp/tests/testthat/test_get_yeardates.R | 204 MODIStsp-2.0.3/MODIStsp/vignettes/MODIStsp.Rmd | 954 MODIStsp-2.0.3/MODIStsp/vignettes/MODIStsp.bib | 1054 134 files changed, 26682 insertions(+), 26629 deletions(-)
Title: Rstudio Addin for Version Control and Assignment Management
using Git
Description: An Rstudio addin for version control that allows users to clone
repositories, create and delete branches, and sync forks on GitHub, GitLab, etc.
Furthermore, the addin uses the GitLab API to allow instructors to create
forks and merge requests for all students/teams with one click of a button.
Author: Vincent Nijs [aut, cre],
Sanjiv Erat [aut]
Maintainer: Vincent Nijs <vnijs@ucsd.edu>
Diff between gitgadget versions 0.5.2 dated 2019-10-10 and 0.6.0 dated 2020-09-20
gitgadget-0.5.2/gitgadget/build/build_gitgadget.R |only gitgadget-0.5.2/gitgadget/build/build_mac.R |only gitgadget-0.5.2/gitgadget/build/build_win.R |only gitgadget-0.5.2/gitgadget/inst/app/help.md |only gitgadget-0.5.2/gitgadget/inst/app/www/choose.dir.scpt |only gitgadget-0.6.0/gitgadget/DESCRIPTION | 16 gitgadget-0.6.0/gitgadget/MD5 | 61 gitgadget-0.6.0/gitgadget/NAMESPACE | 5 gitgadget-0.6.0/gitgadget/NEWS.md | 19 gitgadget-0.6.0/gitgadget/R/aaa.R | 2 gitgadget-0.6.0/gitgadget/R/gadget.R | 1583 ----------------- gitgadget-0.6.0/gitgadget/R/git.R | 421 ++-- gitgadget-0.6.0/gitgadget/R/interactive_testing.R |only gitgadget-0.6.0/gitgadget/README.md | 6 gitgadget-0.6.0/gitgadget/build/vignette.rds |binary gitgadget-0.6.0/gitgadget/inst/app/app.R |only gitgadget-0.6.0/gitgadget/inst/app/components |only gitgadget-0.6.0/gitgadget/inst/app/gitgadget_ui.R |only gitgadget-0.6.0/gitgadget/inst/app/help |only gitgadget-0.6.0/gitgadget/inst/app/init.R |only gitgadget-0.6.0/gitgadget/inst/app/www/style.css | 8 gitgadget-0.6.0/gitgadget/inst/doc/gitgadget.R | 2 gitgadget-0.6.0/gitgadget/inst/doc/gitgadget.html | 103 - gitgadget-0.6.0/gitgadget/man/add_users_repo.Rd |only gitgadget-0.6.0/gitgadget/man/assign_work.Rd | 17 gitgadget-0.6.0/gitgadget/man/check_tokens.Rd |only gitgadget-0.6.0/gitgadget/man/collect_work.Rd | 11 gitgadget-0.6.0/gitgadget/man/create_group.Rd | 11 gitgadget-0.6.0/gitgadget/man/create_repo.Rd | 14 gitgadget-0.6.0/gitgadget/man/fetch_work.Rd | 4 gitgadget-0.6.0/gitgadget/man/get_port.Rd |only gitgadget-0.6.0/gitgadget/man/gitgadget.Rd | 9 gitgadget-0.6.0/gitgadget/man/gitgadget_callr.Rd | 2 gitgadget-0.6.0/gitgadget/man/gitgadget_url.Rd |only gitgadget-0.6.0/gitgadget/man/remove_users_repo.Rd |only 35 files changed, 433 insertions(+), 1861 deletions(-)
Title: Diffusion Model of Conflict (DMC) in Reaction Time Tasks
Description: DMC model simulation detailed in Ulrich, R., Schroeter, H., Leuthold, H., & Birngruber, T. (2015). Automatic and controlled stimulus processing in conflict tasks: Superimposed diffusion processes and delta functions. Cognitive Psychology, 78, 148-174. Ulrich et al. (2015) <doi:10.1016/j.cogpsych.2015.02.005>.
Author: Mackenzie G. Ian [cre, aut]
Maintainer: Mackenzie G. Ian <ian.mackenzie@uni-tuebingen.de>
Diff between DMCfun versions 0.12.1 dated 2020-07-02 and 0.15.0 dated 2020-09-20
DESCRIPTION | 12 +++---- MD5 | 60 ++++++++++++++++++------------------- NAMESPACE | 2 - R/dmcData.R | 56 ++++++++++++++++------------------ R/dmcFit.R | 45 ++++++++++++++------------- R/dmcSim.R | 42 ++++++++++++++----------- R/plot.R | 31 ++++++++++++++----- R/summary.R | 6 +-- README.md | 4 ++ data/flankerData.rda |binary data/flankerDataRaw.rda |binary data/simonData.rda |binary data/simonDataRaw.rda |binary man/calculateCAF.Rd | 7 +--- man/calculateDelta.Rd | 7 +--- man/dmcFitAgg.Rd | 13 ++++---- man/dmcFitVPs.Rd | 13 ++++---- man/dmcObservedData.Rd | 18 ++++------- man/dmcSim.Rd | 13 ++++---- man/plot.dmcfit.Rd | 3 + man/plot.dmcfitvp.Rd | 3 + man/plot.dmcob.Rd | 5 ++- man/plot.dmcsim.Rd | 3 + man/summary.dmcfit.Rd | 2 - man/summary.dmcfitvp.Rd | 2 - src/dmcCppR.cpp | 5 +-- src/inDMC.h | 8 +++- src/outDMC.cpp | 52 ++++++++++++++++---------------- src/runDMC.cpp | 47 +++++++++++++++++++++------- src/runDMC.h | 4 +- tests/testthat/test-calculateCAF.R | 6 +-- 31 files changed, 267 insertions(+), 202 deletions(-)
Title: Variance Stabilizing Transformations for Single Cell UMI Data
Description: A normalization method for single-cell UMI count data using a
variance stabilizing transformation. The transformation is based on a
negative binomial regression model with regularized parameters. As part of the
same regression framework, this package also provides functions for
batch correction, and data correction. See Hafemeister and Satija 2019
<doi:10.1186/s13059-019-1874-1> for more details.
Author: Christoph Hafemeister [aut, cre]
(<https://orcid.org/0000-0001-6365-8254>)
Maintainer: Christoph Hafemeister <christoph.hafemeister@nyu.edu>
Diff between sctransform versions 0.2.1 dated 2019-12-17 and 0.3 dated 2020-09-20
DESCRIPTION | 19 +- MD5 | 59 ++++---- NAMESPACE | 3 NEWS.md | 19 ++ R/RcppExports.R | 8 + R/denoise.R | 61 +++++++- R/differential_expression.R | 38 ++++- R/fit.R |only R/generate.R | 2 R/plotting.R | 77 ++++++++--- R/utils.R | 176 ++++++++++++++++++++++--- R/vst.R | 277 ++++++++++++++++++++++++---------------- README.md | 18 ++ inst |only man/compare_expression.Rd | 26 +++ man/correct.Rd | 18 ++ man/correct_counts.Rd | 15 +- man/generate.Rd | 10 + man/get_model_var.Rd | 17 ++ man/get_residual_var.Rd | 19 ++ man/get_residuals.Rd | 19 ++ man/pbmc.Rd | 6 man/plot_model.Rd | 21 ++- man/plot_model_pars.Rd | 19 ++ man/row_gmean_grouped.Rd |only man/row_mean_grouped.Rd |only man/smooth_via_pca.Rd | 10 + man/vst.Rd | 61 ++++++-- src/RcppExports.cpp | 35 +++++ src/utils.cpp | 58 ++++++++ tests/testthat/test_denoising.R | 9 - tests/testthat/test_generate.R | 2 tests/testthat/test_utils.R |only 33 files changed, 842 insertions(+), 260 deletions(-)
Title: Linking Patient-Reported Outcomes Measures
Description: Perform scale linking to establish relationships between instruments
that measure similar constructs according to the PROsetta Stone methodology, as in Choi, Schalet, Cook, & Cella (2014) <doi:10.1037/a0035768>.
Author: Seung W. Choi [aut, cre] (<https://orcid.org/0000-0003-4777-5420>),
Sangdon Lim [aut] (<https://orcid.org/0000-0002-2988-014X>),
Benjamin D. Schalet [ctb],
Aaron J. Kaat [ctb],
David Cella [ctb]
Maintainer: Seung W. Choi <schoi@austin.utexas.edu>
Diff between PROsetta versions 0.1.4 dated 2020-07-01 and 0.2.0 dated 2020-09-20
PROsetta-0.1.4/PROsetta/vignettes/PROsetta_cache/html/alpha2_aca1eec13c88d8c1adcca43d56e312f4.RData |only PROsetta-0.1.4/PROsetta/vignettes/PROsetta_cache/html/alpha2_aca1eec13c88d8c1adcca43d56e312f4.rdb |only PROsetta-0.1.4/PROsetta/vignettes/PROsetta_cache/html/alpha2_aca1eec13c88d8c1adcca43d56e312f4.rdx |only PROsetta-0.1.4/PROsetta/vignettes/PROsetta_cache/html/alpha_8507627aa0a06b1d579930a1d262e5c4.RData |only PROsetta-0.1.4/PROsetta/vignettes/PROsetta_cache/html/alpha_8507627aa0a06b1d579930a1d262e5c4.rdb |only PROsetta-0.1.4/PROsetta/vignettes/PROsetta_cache/html/alpha_8507627aa0a06b1d579930a1d262e5c4.rdx |only PROsetta-0.1.4/PROsetta/vignettes/PROsetta_cache/html/calib2_ade86944834c3485d5a7a280b742d5f6.RData |only PROsetta-0.1.4/PROsetta/vignettes/PROsetta_cache/html/calib2_ade86944834c3485d5a7a280b742d5f6.rdb |only PROsetta-0.1.4/PROsetta/vignettes/PROsetta_cache/html/calib2_ade86944834c3485d5a7a280b742d5f6.rdx |only PROsetta-0.1.4/PROsetta/vignettes/PROsetta_cache/html/calib3_d82fcff4197e96bf826f5beb988c0030.RData |only PROsetta-0.1.4/PROsetta/vignettes/PROsetta_cache/html/calib3_d82fcff4197e96bf826f5beb988c0030.rdb |only PROsetta-0.1.4/PROsetta/vignettes/PROsetta_cache/html/calib3_d82fcff4197e96bf826f5beb988c0030.rdx |only PROsetta-0.1.4/PROsetta/vignettes/PROsetta_cache/html/calib_f9eae14a381de86e8f6cee601029f7db.RData |only PROsetta-0.1.4/PROsetta/vignettes/PROsetta_cache/html/calib_f9eae14a381de86e8f6cee601029f7db.rdb |only PROsetta-0.1.4/PROsetta/vignettes/PROsetta_cache/html/calib_f9eae14a381de86e8f6cee601029f7db.rdx |only PROsetta-0.1.4/PROsetta/vignettes/PROsetta_cache/html/eqp_dir_5e7a430de7c81b3b7e1e43aff4ca35a3.RData |only PROsetta-0.1.4/PROsetta/vignettes/PROsetta_cache/html/eqp_dir_5e7a430de7c81b3b7e1e43aff4ca35a3.rdb |only PROsetta-0.1.4/PROsetta/vignettes/PROsetta_cache/html/eqp_dir_5e7a430de7c81b3b7e1e43aff4ca35a3.rdx |only 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PROsetta-0.2.0/PROsetta/MD5 | 115 - PROsetta-0.2.0/PROsetta/NAMESPACE | 2 PROsetta-0.2.0/PROsetta/NEWS.md | 18 PROsetta-0.2.0/PROsetta/R/configPROsetta.R | 40 PROsetta-0.2.0/PROsetta/R/core_functions.R | 769 +++++++++- PROsetta-0.2.0/PROsetta/R/import.R | 3 PROsetta-0.2.0/PROsetta/R/linking_functions.R | 361 ++-- PROsetta-0.2.0/PROsetta/R/post_functions.R | 17 PROsetta-0.2.0/PROsetta/README.md | 13 PROsetta-0.2.0/PROsetta/inst/CITATION |only PROsetta-0.2.0/PROsetta/inst/doc/PROsetta.html | 272 +-- PROsetta-0.2.0/PROsetta/inst/shiny/app.R | 29 PROsetta-0.2.0/PROsetta/man/runCFA.Rd | 6 PROsetta-0.2.0/PROsetta/man/runCalibration.Rd | 14 PROsetta-0.2.0/PROsetta/man/runEquateObserved.Rd | 14 PROsetta-0.2.0/PROsetta/man/runFrequency.Rd | 2 PROsetta-0.2.0/PROsetta/man/runLinking.Rd | 2 PROsetta-0.2.0/PROsetta/man/runRSSS.Rd | 14 PROsetta-0.2.0/PROsetta/tests/testthat/test-desc.R | 2 PROsetta-0.2.0/PROsetta/tests/testthat/test_getAnchorDimension.R |only PROsetta-0.2.0/PROsetta/tests/testthat/test_runCalibration.R |only PROsetta-0.2.0/PROsetta/tests/testthat/test_runLinking.R |only PROsetta-0.2.0/PROsetta/tests/testthat/test_runRSSS.R |only PROsetta-0.2.0/PROsetta/vignettes/PROsetta_cache/html/alpha2_3f4081608d050ce976ddb7b5e1e0a683.RData |only PROsetta-0.2.0/PROsetta/vignettes/PROsetta_cache/html/alpha2_3f4081608d050ce976ddb7b5e1e0a683.rdb |only PROsetta-0.2.0/PROsetta/vignettes/PROsetta_cache/html/alpha2_3f4081608d050ce976ddb7b5e1e0a683.rdx |only PROsetta-0.2.0/PROsetta/vignettes/PROsetta_cache/html/alpha_0345803d49f27d51c0f3ee5f687f2f78.RData |only PROsetta-0.2.0/PROsetta/vignettes/PROsetta_cache/html/alpha_0345803d49f27d51c0f3ee5f687f2f78.rdb |only PROsetta-0.2.0/PROsetta/vignettes/PROsetta_cache/html/alpha_0345803d49f27d51c0f3ee5f687f2f78.rdx |only PROsetta-0.2.0/PROsetta/vignettes/PROsetta_cache/html/calib2_844987e1c44a4c824f7b788bff95f10a.RData |only 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Title: Portable Address Space Mapping
Description: Portable '/proc/self/maps' as a data frame.
Determine which library or other region is mapped to a specific
address of a process. --
R packages can contain native code, compiled to shared libraries at build or
installation time.
When loaded, each shared library occupies a portion of the address space of
the main process.
When only a machine instruction pointer is available (e.g. from a backtrace
during error inspection or profiling), the address space map determines
which library this instruction pointer corresponds to.
Author: Kirill Müller [aut, cre] (<https://orcid.org/0000-0002-1416-3412>),
R Consortium [fnd],
Kostya Serebryany [ctb] (Bundled gperftools library),
Sanjay Ghemawat [ctb] (Bundled gperftools library),
Craig Silverstein [ctb] (Bundled gperftools library),
Google Inc. [cph] (Bundled gperftools library)
Maintainer: Kirill Müller <krlmlr+r@mailbox.org>
Diff between procmaps versions 0.0.1 dated 2020-09-11 and 0.0.2 dated 2020-09-20
procmaps-0.0.1/procmaps/src/Makevars.win |only procmaps-0.0.1/procmaps/src/vendor/gperftools/Makefile.am |only procmaps-0.0.1/procmaps/src/vendor/gperftools/Makefile.in |only procmaps-0.0.1/procmaps/src/vendor/gperftools/aclocal.m4 |only procmaps-0.0.1/procmaps/src/vendor/gperftools/autogen.sh |only procmaps-0.0.1/procmaps/src/vendor/gperftools/compile |only procmaps-0.0.1/procmaps/src/vendor/gperftools/config.guess |only procmaps-0.0.1/procmaps/src/vendor/gperftools/config.sub |only procmaps-0.0.1/procmaps/src/vendor/gperftools/configure |only procmaps-0.0.1/procmaps/src/vendor/gperftools/configure.ac |only procmaps-0.0.1/procmaps/src/vendor/gperftools/depcomp |only procmaps-0.0.1/procmaps/src/vendor/gperftools/install-sh |only procmaps-0.0.1/procmaps/src/vendor/gperftools/ltmain.sh |only procmaps-0.0.1/procmaps/src/vendor/gperftools/m4 |only procmaps-0.0.1/procmaps/src/vendor/gperftools/missing |only procmaps-0.0.1/procmaps/src/vendor/gperftools/src/base/commandlineflags.h |only procmaps-0.0.1/procmaps/src/vendor/gperftools/src/base/dynamic_annotations.h |only procmaps-0.0.1/procmaps/src/vendor/gperftools/src/base/logging.cc |only procmaps-0.0.1/procmaps/src/vendor/gperftools/src/config.h.in |only procmaps-0.0.1/procmaps/src/vendor/gperftools/src/config.h.win |only procmaps-0.0.1/procmaps/src/vendor/gperftools/src/gperftools |only procmaps-0.0.1/procmaps/src/vendor/gperftools/src/windows |only procmaps-0.0.1/procmaps/src/vendor/gperftools/test-driver |only procmaps-0.0.2/procmaps/DESCRIPTION | 9 procmaps-0.0.2/procmaps/MD5 | 73 - procmaps-0.0.2/procmaps/NAMESPACE | 1 procmaps-0.0.2/procmaps/NEWS.md | 18 procmaps-0.0.2/procmaps/R/get.R | 18 procmaps-0.0.2/procmaps/R/is-libr.R |only procmaps-0.0.2/procmaps/R/tibble.R | 2 procmaps-0.0.2/procmaps/README.md | 66 - procmaps-0.0.2/procmaps/man/path_is_libr.Rd |only procmaps-0.0.2/procmaps/man/procmap_get.Rd | 4 procmaps-0.0.2/procmaps/src/Makevars | 5 procmaps-0.0.2/procmaps/src/glue.cpp | 57 + procmaps-0.0.2/procmaps/src/init.c | 4 procmaps-0.0.2/procmaps/src/procmap.c | 43 - procmaps-0.0.2/procmaps/src/vendor/gperftools/src/base/basictypes.h | 378 ---------- procmaps-0.0.2/procmaps/src/vendor/gperftools/src/base/logging.h | 193 ----- procmaps-0.0.2/procmaps/src/vendor/gperftools/src/base/sysinfo.cc | 162 ---- procmaps-0.0.2/procmaps/src/vendor/gperftools/src/base/sysinfo.h | 47 - procmaps-0.0.2/procmaps/tests/output.R |only procmaps-0.0.2/procmaps/tests/testthat/test-get.R | 21 43 files changed, 190 insertions(+), 911 deletions(-)
Title: Statistical Tests and Graphics for Hardy-Weinberg Equilibrium
Description: Contains tools for exploring Hardy-Weinberg equilibrium (Hardy, 1908; Weinberg, 1908) <doi:10.1126/science.28.706.49> for bi and multi-allelic genetic marker data. All classical tests (chi-square, exact, likelihood-ratio and permutation tests) with bi-allelic variants are included in the package, as well as functions for power computation and for the simulation of marker data under equilibrium and disequilibrium. Routines for dealing with markers on the X-chromosome are included (Graffelman & Weir, 2016) <doi: 10.1038/hdy.2016.20>, including Bayesian procedures. Some exact and permutation procedures also work with multi-allelic variants. Special test procedures that jointly address Hardy-Weinberg equilibrium and equality of allele frequencies in both sexes are supplied, for the bi and multi-allelic case. Functions for testing equilibrium in the presence of missing data by using multiple imputation are also provided. Implements several graphics for exploring the equilibrium status of a large set of bi-allelic markers: ternary plots with acceptance regions, log-ratio plots and Q-Q plots.
Author: Jan Graffelman [aut, cre],
Christopher Chang [ctb],
Xavi Puig [ctb],
Jan Wigginton [ctb],
Leonardo Ortoleva [ctb],
William R. Engels [ctb]
Maintainer: Jan Graffelman <jan.graffelman@upc.edu>
Diff between HardyWeinberg versions 1.6.7 dated 2020-09-20 and 1.6.8 dated 2020-09-20
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ inst/doc/HardyWeinberg.Rnw | 2 +- inst/doc/HardyWeinberg.pdf |binary man/HardyWeinberg-package.Rd | 4 ++-- src/HWxChromosomal.cpp | 19 +++++-------------- vignettes/HardyWeinberg.Rnw | 2 +- 7 files changed, 19 insertions(+), 28 deletions(-)
Title: Lookup Tables to Generate Poverty Likelihoods and Rates using
the Poverty Probability Index (PPI)
Description: The Poverty Probability Index (PPI) is a poverty measurement tool
for organizations and businesses with a mission to serve the poor. The PPI
is statistically-sound, yet simple to use: the answers to 10 questions about
a household’s characteristics and asset ownership are scored to compute the
likelihood that the household is living below the poverty line – or above by
only a narrow margin. This package contains country-specific lookup data tables
used as reference to determine the poverty likelihood of a household based
on their score from the country-specific PPI questionnaire. These lookup
tables have been extracted from documentation of the PPI found at
<https://www.povertyindex.org> and managed by Innovations for Poverty Action
<https://www.poverty-action.org>.
Author: Ernest Guevarra [aut, cre] (<https://orcid.org/0000-0002-4887-4415>)
Maintainer: Ernest Guevarra <ernestgmd@gmail.com>
Diff between ppitables versions 0.5.2 dated 2020-01-08 and 0.5.3 dated 2020-09-20
DESCRIPTION | 17 ++- MD5 | 217 +++++++++++++++++++++++++------------------------- NAMESPACE | 3 NEWS.md | 23 +++++ R/data.R | 138 +++++++++++++++++++++++++++++++ R/find_table.R | 64 ++++++-------- R/get_table.R | 58 +++++-------- R/ppitables.R | 4 R/sysdata.rda |binary README.md | 165 ++++++++++++++++++++------------------ data/ppiGHA2019.rda |binary data/ppiMMR2019.rda |binary data/ppiMOZ2019.rda |binary data/ppiMWI2020.rda |only data/ppiRWA2019.rda |binary inst/WORDLIST |only inst/_pkgdown.yml |only man/find_table.Rd | 12 +- man/get_table.Rd | 12 +- man/ppiAFG2012.Rd | 6 - man/ppiAGO2015.Rd | 6 - man/ppiBEN2012.Rd | 6 - man/ppiBFA2011.Rd | 6 - man/ppiBFA2014.Rd | 6 - man/ppiBFA2017.Rd | 6 - man/ppiBGD2013.Rd | 6 - man/ppiBOL2015.Rd | 6 - man/ppiBRA2010.Rd | 6 - man/ppiCIV2013.Rd | 6 - man/ppiCIV2018.Rd | 6 - man/ppiCMR2013.Rd | 6 - man/ppiCOL2012.Rd | 6 - man/ppiCOL2012_a.Rd | 6 - man/ppiCOL2018.Rd | 6 - man/ppiDOM2010.Rd | 6 - man/ppiDOM2018.Rd | 6 - man/ppiECU2015.Rd | 6 - man/ppiEGY2010.Rd | 6 - man/ppiETH2016.Rd | 6 - man/ppiFJI2014.Rd | 6 - man/ppiGHA2015.Rd | 6 - man/ppiGHA2015_a.Rd | 6 - man/ppiGHA2015_b.Rd | 6 - man/ppiGHA2019.Rd | 27 +++++- man/ppiGTM2016.Rd | 6 - man/ppiHND2010.Rd | 6 - man/ppiHTI2016.Rd | 6 - man/ppiIDN2012.Rd | 6 - man/ppiIDN2012_a.Rd | 6 - man/ppiIND2016_r59.Rd | 6 - man/ppiIND2016_r62.Rd | 6 - man/ppiIND2016_r66.Rd | 6 - man/ppiIND2016_r68.Rd | 6 - man/ppiJOR2010.Rd | 6 - man/ppiKEN2011.Rd | 6 - man/ppiKEN2018.Rd | 6 - man/ppiKGZ2015.Rd | 6 - man/ppiKHM2015.Rd | 6 - man/ppiKHM2015_gov.Rd | 6 - man/ppiKHM2015_wb.Rd | 6 - man/ppiLKA2016.Rd | 6 - man/ppiMAR2013.Rd | 6 - man/ppiMDG2015.Rd | 6 - man/ppiMEX2017.Rd | 6 - man/ppiMEX2017_a.Rd | 6 - man/ppiMLI2010.Rd | 6 - man/ppiMMR2012.Rd | 6 - man/ppiMMR2019.Rd | 27 +++++- man/ppiMNG2016.Rd | 6 - man/ppiMOZ2013.Rd | 6 - man/ppiMOZ2019.Rd | 27 +++++- man/ppiMWI2015.Rd | 6 - man/ppiMWI2015_gov.Rd | 6 - man/ppiMWI2015_pbm.Rd | 6 - man/ppiMWI2020.Rd |only man/ppiNAM2013.Rd | 6 - man/ppiNER2013.Rd | 6 - man/ppiNGA2015.Rd | 6 - man/ppiNIC2013.Rd | 6 - man/ppiNPL2013.Rd | 6 - man/ppiNPL2013_a.Rd | 6 - man/ppiPAK2009.Rd | 6 - man/ppiPER2012.Rd | 6 - man/ppiPER2018.Rd | 6 - man/ppiPHL2014.Rd | 6 - man/ppiPHL2014_a.Rd | 6 - man/ppiPHL2018.Rd | 6 - man/ppiPRY2012.Rd | 6 - man/ppiPSE2014.Rd | 6 - man/ppiROU2009.Rd | 6 - man/ppiRUS2010.Rd | 6 - man/ppiRWA2016.Rd | 6 - man/ppiRWA2019.Rd | 27 +++++- man/ppiSEN2009.Rd | 6 - man/ppiSEN2018.Rd | 6 - man/ppiSLE2011.Rd | 6 - man/ppiSLV2010.Rd | 6 - man/ppiSYR2010.Rd | 6 - man/ppiTGO2018.Rd | 6 - man/ppiTJK2015.Rd | 6 - man/ppiTLS2013.Rd | 6 - man/ppiTZA2016.Rd | 6 - man/ppiUGA2015.Rd | 6 - man/ppiVNM2009.Rd | 6 - man/ppiYEM2009.Rd | 6 - man/ppiZAF2009.Rd | 6 - man/ppiZMB2013_cso.Rd | 6 - man/ppiZMB2013_got.Rd | 6 - man/ppiZMB2017.Rd | 6 - man/ppiZMB2017_a.Rd | 6 - man/ppitables.Rd | 9 -- tests/spelling.R |only 112 files changed, 879 insertions(+), 467 deletions(-)
Title: Submitter and Monitor of the 'LSF Cluster'
Description: It submits R code/R scripts/shell commands to 'LSF cluster'
(<https://en.wikipedia.org/wiki/Platform_LSF>, the 'bsub' system) without
leaving R. There is also an interactive 'shiny' app for monitoring the job status.
Author: Zuguang Gu
Maintainer: Zuguang Gu <z.gu@dkfz.de>
Diff between bsub versions 1.0.0 dated 2020-07-30 and 1.0.2 dated 2020-09-20
DESCRIPTION | 11 ++-- MD5 | 37 ++++++++++++--- NAMESPACE | 3 + NEWS | 12 ++++ R/global.R | 4 - R/monitor.R | 121 +++++++++++++++++++++++++++++++++++++++++++++++++- R/zzz.R | 16 +++++- build |only inst/app/app.R | 47 +++++++++++++++++-- inst/doc |only man/bjobs_barplot.Rd |only man/bjobs_timeline.Rd |only vignettes |only 13 files changed, 229 insertions(+), 22 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-09-04 1.3.0
2020-05-15 1.2.0
2019-10-12 1.1.2
2019-08-26 1.1.1
2019-05-22 1.1.0
2019-03-06 1.0.4
2019-01-30 1.0.3
Title: Bayesian Quantile Regression for Ordinal Models
Description: Provides an estimation technique for Bayesian quantile
regression in ordinal models. Two algorithms are considered - one
for an ordinal model with three outcomes and the other for an ordinal
model with more than 3 outcomes. It further provides model performance
criteria and trace plots for Markov chain Monte Carlo (MCMC) draws.
Rahman, M. A. (2016) <doi:10.1214/15-BA939>.
Greenberg, E. (2012) <doi:10.1017/CBO9781139058414>.
Spiegelhalter, D. J., Best, N. G., Carlin B. P. and Linde A. (2002) <doi:10.1111/1467-9868.00353>.
Author: Dr. Mohammad Arshad Rahman Developer [aut],
Prajual Maheshwari [cre]
Maintainer: Prajual Maheshwari <prajual1391@gmail.com>
Diff between bqror versions 0.1.1 dated 2020-08-11 and 0.1.2 dated 2020-09-20
DESCRIPTION | 6 +++--- MD5 | 4 ++-- R/ODRI.R | 7 +++++++ 3 files changed, 12 insertions(+), 5 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-09-04 0.4.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-01-25 0.5.1
2014-11-06 0.5
2014-08-04 0.01
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-09-16 0.4.1
2020-08-19 0.4.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-06-07 0.1.3
2020-05-12 0.1.2
Title: Simulation Methods for Legislative Redistricting
Description: Enables researchers to sample redistricting plans from a pre-specified
target distribution using Sequential Monte Carlo and Markov Chain Monte Carlo
algorithms. The package allows for the implementation of various constraints in
the redistricting process such as geographic compactness and population parity
requirements. Tools for analysis such as computation of various summary statistics
and plotting functionality are also included. The package implements methods
described in Fifield, Higgins, Imai and Tarr (2020) <doi: 10.1080/10618600.2020.1739532>,
Fifield, Imai, Kawahara, and Kenny (2020) <doi: 10.1080/2330443X.2020.1791773>,
and McCartan and Imai (2020) <arXiv: 2008.06131>.
Author: Ben Fifield [aut, cre],
Christopher T. Kenny [aut],
Cory McCartan [aut],
Alexander Tarr [aut],
Michael Higgins [ctb],
Jun Kawahara [aut],
Kosuke Imai [aut]
Maintainer: Ben Fifield <benfifield@gmail.com>
Diff between redist versions 1.3-3 dated 2018-12-15 and 2.0.1 dated 2020-09-20
DESCRIPTION | 67 MD5 | 194 ++ NAMESPACE | 63 R/RcppExports.R | 114 + R/adjacency.R |only R/calcstats.R |only R/compactness.R |only R/crsg.R |only R/data.R | 96 + R/diagplot.R |only R/distances.R |only R/enumerate.R | 223 +++ R/enumpart.R |only R/map.R |only R/metrics.R |only R/parity.R |only R/redist-package.R | 12 R/redist-smc.R |only R/redist.R | 2729 +++++++++++++++++++-------------------- R/redistMPI.R | 1844 +++++++++++++------------- R/redist_findparams.R | 159 +- R/rsg.R | 20 build |only data/algdat.p10.rda |binary data/algdat.p20.rda |binary data/algdat.pfull.rda |binary data/datalist | 3 data/fl25.rda |only data/fl250.rda |only data/fl70.rda |only inst/CITATION | 11 inst/doc |only inst/enumpart |only inst/python |only man/as.matrix.redist.Rd |only man/figures |only man/fl25.Rd |only man/fl250.Rd |only man/fl70.Rd |only man/is_last.Rd |only man/redist-package.Rd | 12 man/redist.adjacency.Rd |only man/redist.calc.frontier.size.Rd |only man/redist.combine.Rd | 10 man/redist.combine.anneal.Rd |only man/redist.combine.mpi.Rd | 10 man/redist.compactness.Rd |only man/redist.crsg.Rd |only man/redist.diagplot.Rd | 18 man/redist.distances.Rd |only man/redist.findparams.Rd | 4 man/redist.init.enumpart.Rd |only man/redist.ipw.Rd | 18 man/redist.map.Rd |only man/redist.mcmc.Rd | 74 - man/redist.mcmc.anneal.Rd |only man/redist.mcmc.mpi.Rd | 33 man/redist.metrics.Rd |only man/redist.parity.Rd |only man/redist.prep.enumpart.Rd |only man/redist.read.enumpart.Rd |only man/redist.rsg.Rd | 6 man/redist.run.enumpart.Rd |only man/redist.samplepart.Rd |only man/redist.segcalc.Rd | 2 man/redist.smc.Rd |only man/redist.smc_is_ci.Rd |only src/Makevars | 5 src/Makevars.win | 6 src/RcppExports.cpp | 410 +++++ src/constraint_calc_helper.cpp | 699 ++++++++- src/constraint_calc_helper.h | 56 src/crsg.cpp |only src/crsg.h |only src/distance_helpers.cpp |only src/distance_helpers.h |only src/enumerate.cpp | 556 +++---- src/hamming.cpp |only src/kirchhoff.cpp |only src/kirchhoff.h |only src/make_swaps_helper.cpp | 78 - src/map_calc.cpp |only src/map_calc.h |only src/metrics.cpp |only src/minkowski.cpp |only src/redist_analysis.cpp | 111 + src/redist_init.c | 82 - src/redist_types.h |only src/rsg.cpp | 59 src/shatter_search.cpp |only src/shatter_search.h |only src/smc.cpp |only src/smc.h |only src/smc_base.cpp |only src/smc_base.h |only src/spanning_tree_utils.cpp |only src/sw_mh_alg.cpp | 573 +++----- src/sw_mh_helper.cpp | 252 +-- src/sw_mh_helper.h | 20 src/tree_op.cpp |only src/tree_op.h |only src/wilson.cpp |only src/wilson.h |only vignettes |only 104 files changed, 5161 insertions(+), 3468 deletions(-)
Title: Color Palettes from Color Lisa
Description: Contains 128 palettes from Color Lisa. All palettes are based on
masterpieces from the worlds greatest artists. For more information, see
<http://colorlisa.com/>.
Author: Tyler Littlefield [aut, cre] (<https://orcid.org/0000-0002-6020-1125>)
Maintainer: Tyler Littlefield <tylerlittlefield@hey.com>
Diff between lisa versions 0.1.1 dated 2019-11-03 and 0.1.2 dated 2020-09-20
DESCRIPTION | 17 ++-- MD5 | 43 +++++------ NAMESPACE | 1 NEWS.md | 7 + R/lisa-package.R |only R/lisa.R | 11 ++ R/utils.R | 12 ++- README.md | 112 +++++++++++++---------------- build/vignette.rds |binary data/artwork.rda |binary data/lisa.rda |binary inst/doc/lisa-palette.R | 16 ++-- inst/doc/lisa-palette.html | 117 +++++++++++++++++-------------- man/artwork.Rd | 21 +++-- man/figures/README-example1-1.png |binary man/figures/README-example2-1.png |binary man/figures/README-example2-2.png |binary man/figures/README-example2-3.png |binary man/figures/README-ggplot2-example-1.png |binary man/figures/README-waffle-1.png |binary man/figures/logo.png |binary man/lisa.Rd | 4 - tests/testthat/test-lisa-data.R | 4 - 23 files changed, 200 insertions(+), 165 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-10-24 0.9-14
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-05-18 2.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-11-10 0.2.2
2019-10-30 0.2.1
2019-02-07 0.2.0
2018-05-13 0.1.9
2018-02-18 0.1.8
2017-11-20 0.1.7
2017-09-06 0.1.6
2017-06-22 0.1.5
2017-03-31 0.1.4
2017-03-12 0.1.3
2013-05-30 0.1.1
2013-05-16 0.1.0
2013-01-21 0.0.4
2012-09-18 0.0.3
2012-09-12 0.0.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-07-30 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-12-08 2.0
2019-04-01 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-06-22 2.0.8
2018-04-11 2.0.7
2011-10-27 2.0.5
2011-10-18 2.0.4
2011-03-23 2.0.3
2011-01-05 2.0.2
2011-01-03 2.0.1
2010-12-23 2.0.0
2009-09-29 1.1.12
2009-09-08 1.1.11
2009-08-20 1.1.10
2009-08-19 1.1.9
2009-08-04 1.1.8
2008-05-25 1.1.7
2007-10-27 1.1.6
2007-10-25 1.1.4
2007-10-14 1.1.3
2007-10-11 1.1.1
2007-10-10 1.1.0
2007-03-31 1.0.9
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-12-22 0.6
2013-04-05 0.5
2011-10-26 0.4
2011-04-24 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-09-12 0.3-0
2017-10-20 0.1-3
Title: Common Plots for Analysis
Description: Select data analysis plots, under a standardized calling interface implemented on top of 'ggplot2' and 'plotly'.
Plots of interest include: 'ROC', gain curve, scatter plot with marginal distributions,
conditioned scatter plot with marginal densities,
box and stem with matching theoretical distribution, and density with matching theoretical distribution.
Author: John Mount [aut, cre],
Nina Zumel [aut],
Win-Vector LLC [cph]
Maintainer: John Mount <jmount@win-vector.com>
Diff between WVPlots versions 1.2.8 dated 2020-09-04 and 1.2.9 dated 2020-09-20
WVPlots-1.2.8/WVPlots/man/ROCPlotPairList.Rd |only WVPlots-1.2.9/WVPlots/DESCRIPTION | 12 - WVPlots-1.2.9/WVPlots/MD5 | 21 +- WVPlots-1.2.9/WVPlots/NAMESPACE | 3 WVPlots-1.2.9/WVPlots/NEWS.md | 8 WVPlots-1.2.9/WVPlots/R/GainCurve.R | 32 +++ WVPlots-1.2.9/WVPlots/R/ROC.R | 150 +++++++++++------ WVPlots-1.2.9/WVPlots/R/sigr_stand_ins.R |only WVPlots-1.2.9/WVPlots/inst/doc/WVPlots_concept.html | 130 +++++++------- WVPlots-1.2.9/WVPlots/inst/doc/WVPlots_examples.html | 4 WVPlots-1.2.9/WVPlots/man/GainCurvePlotWithNotation.Rd | 24 ++ WVPlots-1.2.9/WVPlots/man/ROCPlot.Rd | 49 ++++- WVPlots-1.2.9/WVPlots/man/ROCPlotList.Rd |only 13 files changed, 292 insertions(+), 141 deletions(-)
Title: Hyphenation and Syllable Counting for Text Analysis
Description: Provides the hyphenation algorithm used for 'TeX'/'LaTeX' and similar software, as proposed by Liang (1983, <https://tug.org/docs/liang/>). Mainly contains the
function hyphen() to be used for hyphenation/syllable counting of text objects. It was originally developed for and part of the 'koRpus' package, but later
released as a separate package so it's lighter to have this particular functionality available for other packages. Support for various languages needs be added
on-the-fly or by plugin packages (<https://undocumeantit.github.io/repos/>); this package does not include any language specific data. Due to some restrictions
on CRAN, the full package sources are only available from the project homepage. To ask for help, report bugs, request features, or discuss the development of
the package, please subscribe to the koRpus-dev mailing list (<http://korpusml.reaktanz.de>).
Author: Meik Michalke [aut, cre]
Maintainer: Meik Michalke <meik.michalke@hhu.de>
Diff between sylly versions 0.1-5 dated 2018-07-29 and 0.1-6 dated 2020-09-20
ChangeLog | 13 + DESCRIPTION | 35 +-- MD5 | 48 ++--- R/02_method_kRp.hyphen.R | 9 R/available.sylly.lang.R | 2 R/install.sylly.lang.R | 2 R/set.sylly.env.R | 2 R/sylly-internal.R | 210 +++++++++++----------- R/sylly-package.R | 4 README.md | 15 - build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 8 inst/NEWS.Rd | 24 ++ inst/doc/sylly_vignette.R | 16 - inst/doc/sylly_vignette.Rmd | 6 inst/doc/sylly_vignette.html | 407 +++++++++++++++++++++++++++++++++++-------- man/correct-methods.Rd | 4 man/hyphen-methods.Rd | 32 ++- man/install.sylly.lang.Rd | 7 man/kRp.hyphen-methods.Rd | 8 man/manage.hyph.pat.Rd | 11 - man/set.hyph.support.Rd | 2 man/sylly-package.Rd | 4 vignettes/sylly_vignette.Rmd | 6 25 files changed, 601 insertions(+), 274 deletions(-)
Title: Statistical Tests and Graphics for Hardy-Weinberg Equilibrium
Description: Contains tools for exploring Hardy-Weinberg equilibrium (Hardy, 1908; Weinberg, 1908) <doi:10.1126/science.28.706.49> for bi and multi-allelic genetic marker data. All classical tests (chi-square, exact, likelihood-ratio and permutation tests) with bi-allelic variants are included in the package, as well as functions for power computation and for the simulation of marker data under equilibrium and disequilibrium. Routines for dealing with markers on the X-chromosome are included (Graffelman & Weir, 2016) <doi: 10.1038/hdy.2016.20>, including Bayesian procedures. Some exact and permutation procedures also work with multi-allelic variants. Special test procedures that jointly address Hardy-Weinberg equilibrium and equality of allele frequencies in both sexes are supplied, for the bi and multi-allelic case. Functions for testing equilibrium in the presence of missing data by using multiple imputation are also provided. Implements several graphics for exploring the equilibrium status of a large set of bi-allelic markers: ternary plots with acceptance regions, log-ratio plots and Q-Q plots.
Author: Jan Graffelman [aut, cre],
Christopher Chang [ctb],
Xavi Puig [ctb],
Jan Wigginton [ctb],
Leonardo Ortoleva [ctb],
William R. Engels [ctb]
Maintainer: Jan Graffelman <jan.graffelman@upc.edu>
Diff between HardyWeinberg versions 1.6.6 dated 2020-08-13 and 1.6.7 dated 2020-09-20
DESCRIPTION | 16 +++--- MD5 | 42 +++++++++------- NAMESPACE | 5 + R/EAFExact.R | 4 - R/HWNetwork.R |only R/HWPerm.mult.R | 50 +++++++++++-------- R/HWTriExact.R | 22 ++++++-- R/RcppExports.R | 4 + R/fold.R |only build/vignette.rds |binary data/TSIXTriAllelics.rda |only inst/doc/HardyWeinberg.R | 110 ++++++++++++++++++++++++++++++------------- inst/doc/HardyWeinberg.Rnw | 84 ++++++++++++++++++++++++++++++++ inst/doc/HardyWeinberg.pdf |binary man/EAFExact.Rd | 3 - man/HWNetwork.Rd |only man/HWPerm.mult.Rd | 5 - man/HWTriExact.Rd | 2 man/HardyWeinberg-package.Rd | 4 - man/TSIXTriAllelics.Rd |only man/fold.Rd |only src/HWxChrom.h |only src/HWxChromosomal.cpp |only src/RcppExports.cpp | 22 ++++++++ vignettes/HardyWeinberg.Rnw | 84 ++++++++++++++++++++++++++++++++ vignettes/HardyWeinberg.bib | 57 ++++++++++++++++++++++ 26 files changed, 418 insertions(+), 96 deletions(-)
Title: Global Surface Summary of the Day ('GSOD') Weather Data Client
Description: Provides automated downloading, parsing, cleaning, unit conversion
and formatting of Global Surface Summary of the Day ('GSOD') weather data
from the from the USA National Centers for Environmental Information
('NCEI'). Units are converted from from United States Customary System
('USCS') units to International System of Units ('SI'). Stations may be
individually checked for number of missing days defined by the user, where
stations with too many missing observations are omitted. Only stations with
valid reported latitude and longitude values are permitted in the final
data. Additional useful elements, saturation vapour pressure ('es'), actual
vapour pressure ('ea') and relative humidity ('RH') are calculated from the
original data using the improved August-Roche-Magnus approximation (Alduchov
& Eskridge 1996) and included in the final data set. The resulting metadata
include station identification information, country, state, latitude,
longitude, elevation, weather observations and associated flags. For
information on the 'GSOD' data from 'NCEI', please see the 'GSOD'
'readme.txt' file available from,
<https://www1.ncdc.noaa.gov/pub/data/gsod/readme.txt>.
Author: Adam Sparks [aut, cre] (<https://orcid.org/0000-0002-0061-8359>),
Tomislav Hengl [aut] (<https://orcid.org/0000-0002-9921-5129>),
Andrew Nelson [aut] (<https://orcid.org/0000-0002-7249-3778>),
Hugh Parsonage [cph, ctb] (<https://orcid.org/0000-0003-4055-0835>),
Taras Kaduk [ctb] (Suggestion for handling bulk station downloads more
efficiently),
Gwenael Giboire [ctb] (Several bug reports in early versions and
testing feedback),
Łukasz Pawlik [ctb] (Reported bug in windspeed conversion calculation),
Ross Darnell [ctb] (Reported bug in 'Windows OS' versions causing
'GSOD' data untarring to fail,
<https://orcid.org/0000-0002-7973-6322>),
Tyler Widdison [ctb] (Reported bug where `nearest_stations()` did not
return stations in order of nearest to farthest.)
Maintainer: Adam Sparks <adamhsparks@gmail.com>
Diff between GSODR versions 2.1.1 dated 2020-06-13 and 2.1.2 dated 2020-09-20
DESCRIPTION | 25 +- MD5 | 48 ++-- NEWS.md | 20 + R/get_GSOD.R | 8 R/get_inventory.R | 2 R/nearest_stations.R | 33 +- R/process_csv.R | 2 R/reformat_GSOD.R | 19 + R/update_station_list.R | 2 README.md | 14 - build/vignette.rds |binary inst/doc/GSODR.Rmd | 286 +++++++++++------------- inst/doc/GSODR.html | 388 +++++++++++++++------------------ inst/extdata/isd_history.rda |binary man/GSODR-package.Rd | 9 man/get_GSOD.Rd | 8 man/get_inventory.Rd | 2 man/nearest_stations.Rd | 15 - man/reformat_GSOD.Rd | 12 - man/update_station_list.Rd | 2 tests/testthat/test-nearest_stations.R | 12 - tests/testthat/test-reformat_GSOD.R | 8 vignettes/GSODR.Rmd | 286 +++++++++++------------- vignettes/GSODR.Rmd.orig | 31 -- vignettes/unnamed-chunk-1-1.png |binary 25 files changed, 612 insertions(+), 620 deletions(-)
Title: A Collection of Fluorescence Fluctuation Spectroscopy Analysis
Methods
Description: This is a package for fluorescence fluctuation spectroscopy data analysis methods such as spFCS, FCCS, scanning-FCS, pCF, N&B and pCOMB, among others.
In addition, several data detrending tools are provided. For an extensive user's guide for the use of FCSlib, please navigate to (<https://github.com/FCSlib/FCSlib/tree/master/Documentation>).
Sample data can be found at (<https://github.com/FCSlib/FCSlib/tree/master/Sample%20Data>).
Author: Raúl Pinto Cámara, Adan Guerrero, Alejandro Linares, José Damián Martínez Reyes, Haydee Hernández.
Maintainer: Raúl Pinto Cámara <support.fcslib@mail.ibt.unam.mx>
Diff between FCSlib versions 1.2.0 dated 2020-09-02 and 1.2.1 dated 2020-09-20
DESCRIPTION | 8 ++-- MD5 | 4 +- R/polyDetrend.R | 106 ++++++++++++++++++++++++++++---------------------------- 3 files changed, 59 insertions(+), 59 deletions(-)