Title: Fitting Linear Models with Endogenous Regressors using Latent
Instrumental Variables
Description: Fits linear models with endogenous regressor using latent instrumental variable approaches.
The methods included in the package are Lewbel's (1997) <doi:10.2307/2171884> higher moments approach as well as
Lewbel's (2012) <doi:10.1080/07350015.2012.643126> heteroscedasticity approach, Park and Gupta's (2012) <doi:10.1287/mksc.1120.0718> joint estimation method
that uses Gaussian copula and Kim and Frees's (2007) <doi:10.1007/s11336-007-9008-1> multilevel generalized
method of moment approach that deals with endogeneity in a multilevel setting.
These are statistical techniques to address the endogeneity problem where no external instrumental variables are needed.
Note that with version 2.0.0 sweeping changes were introduced which greatly improve functionality and usability but break backwards compatibility.
Author: Raluca Gui [cre, aut],
Markus Meierer [aut],
Rene Algesheimer [aut],
Patrik Schilter [aut]
Maintainer: Raluca Gui <raluca.gui@business.uzh.ch>
Diff between REndo versions 2.4.0 dated 2020-05-24 and 2.4.1 dated 2020-10-14
DESCRIPTION | 10 +++++----- MD5 | 12 ++++++------ NEWS.md | 7 +++++++ R/f_checkinput_copulacorrection.R | 3 --- build/vignette.rds |binary src/f_copulacorrection_LL_rcpp.cpp | 4 ++-- tests/testthat/test-inputchecks_copulacorrection.R | 6 ------ 7 files changed, 20 insertions(+), 22 deletions(-)
Title: Linguistic Fuzzy Logic
Description: Various algorithms related to linguistic fuzzy logic: mining for linguistic fuzzy association
rules, composition of fuzzy relations, performing perception-based logical deduction (PbLD),
and forecasting time-series using fuzzy rule-based ensemble (FRBE).
Author: Michal Burda [aut, cre] (<https://orcid.org/0000-0002-4182-4407>)
Maintainer: Michal Burda <michal.burda@osu.cz>
Diff between lfl versions 2.0.1 dated 2020-05-19 and 2.1.0 dated 2020-10-14
lfl-2.0.1/lfl/R/lcutDeprecated.R |only lfl-2.0.1/lfl/man/lcut3.Rd |only lfl-2.0.1/lfl/man/sobocinski.Rd |only lfl-2.0.1/lfl/tests/testthat/test-algebraNA.R |only lfl-2.0.1/lfl/tests/testthat/test-lcutDeprecated.R |only lfl-2.1.0/lfl/DESCRIPTION | 13 lfl-2.1.0/lfl/MD5 | 92 lfl-2.1.0/lfl/NAMESPACE | 22 lfl-2.1.0/lfl/NEWS.md | 15 lfl-2.1.0/lfl/R/algebra.R | 118 - lfl-2.1.0/lfl/R/algebraNA.R | 245 +- lfl-2.1.0/lfl/R/compose.R | 41 lfl-2.1.0/lfl/R/defuzz.R | 4 lfl-2.1.0/lfl/R/exprs.R | 22 lfl-2.1.0/lfl/R/exprsDeprecated.R | 8 lfl-2.1.0/lfl/R/fcut.R | 10 lfl-2.1.0/lfl/R/fsets.R | 4 lfl-2.1.0/lfl/R/lcut.R | 134 - lfl-2.1.0/lfl/R/lingexpr.R | 7 lfl-2.1.0/lfl/R/mult.R | 15 lfl-2.1.0/lfl/R/pbld.R | 2 lfl-2.1.0/lfl/R/print.ctx.R |only lfl-2.1.0/lfl/R/quantifier.R |only lfl-2.1.0/lfl/R/searchrules.R | 4 lfl-2.1.0/lfl/R/sugeno.R |only lfl-2.1.0/lfl/R/testers.R | 16 lfl-2.1.0/lfl/man/algebra.Rd | 56 lfl-2.1.0/lfl/man/algebraNA.Rd |only lfl-2.1.0/lfl/man/compose.Rd | 32 lfl-2.1.0/lfl/man/defuzz.Rd | 4 lfl-2.1.0/lfl/man/fcut.Rd | 8 lfl-2.1.0/lfl/man/frbe.Rd | 2 lfl-2.1.0/lfl/man/lcut.Rd | 68 lfl-2.1.0/lfl/man/lingexpr.Rd | 6 lfl-2.1.0/lfl/man/pbld.Rd | 2 lfl-2.1.0/lfl/man/print.algebra.Rd |only lfl-2.1.0/lfl/man/print.ctx.Rd |only lfl-2.1.0/lfl/man/quantifier.Rd |only lfl-2.1.0/lfl/man/searchrules.Rd | 4 lfl-2.1.0/lfl/man/sugeno.Rd |only lfl-2.1.0/lfl/man/triangle.Rd | 6 lfl-2.1.0/lfl/man/triangular.Rd | 22 lfl-2.1.0/lfl/tests/testthat/test-algebra.R | 53 lfl-2.1.0/lfl/tests/testthat/test-algebraNA-alg_properties.R |only lfl-2.1.0/lfl/tests/testthat/test-algebraNA-dragonfly.R |only lfl-2.1.0/lfl/tests/testthat/test-algebraNA-kleene.R |only lfl-2.1.0/lfl/tests/testthat/test-algebraNA-lowerEst.R |only lfl-2.1.0/lfl/tests/testthat/test-algebraNA-nelson.R |only lfl-2.1.0/lfl/tests/testthat/test-algebraNA-sobocinski.R |only lfl-2.1.0/lfl/tests/testthat/test-compose.R | 31 lfl-2.1.0/lfl/tests/testthat/test-composeNA.R | 2 lfl-2.1.0/lfl/tests/testthat/test-exprs.R | 134 - lfl-2.1.0/lfl/tests/testthat/test-lcut.R | 22 lfl-2.1.0/lfl/tests/testthat/test-lingexpr.R | 1178 +++++------ lfl-2.1.0/lfl/tests/testthat/test-mult.R | 11 lfl-2.1.0/lfl/tests/testthat/test-quantifier.R |only lfl-2.1.0/lfl/tests/testthat/test-searchrules.R | 2 57 files changed, 1373 insertions(+), 1042 deletions(-)
Title: Interactive, Complex Heatmaps
Description: Make complex, interactive heatmaps. 'iheatmapr' includes a modular
system for iteratively building up complex heatmaps, as well as the
iheatmap() function for making relatively standard heatmaps.
Author: Alicia Schep [aut, cre] (<https://orcid.org/0000-0002-3915-0618>),
Sarah Kummerfeld [aut] (<https://orcid.org/0000-0002-0089-2358>),
Genentech [cph],
Andee Kaplan [rev] (Reviewer for rOpensci review process
https://github.com/ropensci/onboarding/issues/107),
Carl Ganz [rev] (Reviewer for rOpensci review process
https://github.com/ropensci/onboarding/issues/107),
Alex Johnson [ctb] (plotly.js library),
Étienne Tétreault-Pinard [ctb] (plotly.js library),
Mikola Lysenko [ctb] (plotly.js library),
Ricky Reusser [ctb] (plotly.js library),
Robert Monfera [ctb] (plotly.js library),
Nicolas Riesco [ctb] (plotly.js library),
Miklós Tusz [ctb] (plotly.js library),
Chelsea Douglas [ctb] (plotly.js library),
Ben Postlethwaite [ctb] (plotly.js library),
Chris Parmer [ctb] (plotly.js library),
Alex Vados [ctb] (plotly.js library),
Plotly [cph] (plotly.js library),
Frederick Boehm [ctb] (colorbars & main_heatmap)
Maintainer: Alicia Schep <aschep@gmail.com>
Diff between iheatmapr versions 0.5.0 dated 2020-07-07 and 0.5.1 dated 2020-10-14
DESCRIPTION | 6 MD5 | 195 +++--- NEWS.md | 5 R/axis_labels.R | 4 R/axis_titles.R | 4 R/barplot.R | 4 R/colorbars.R | 9 R/generic_subplots.R | 4 R/iheatmapr.R | 2 R/signal.R | 4 R/subplot.R | 2 inst/doc/iheatmapr-minimal.Rmd | 2 inst/doc/iheatmapr-minimal.html | 6 man/add_col_barplot.Rd | 2 man/add_col_labels.Rd | 2 man/add_col_plot.Rd | 2 man/add_col_title.Rd | 2 man/add_row_barplot.Rd | 2 man/add_row_labels.Rd | 2 man/add_row_plot.Rd | 2 man/add_row_title.Rd | 2 man/add_subplot.Rd | 2 man/iheatmapr.Rd | 2 tests/testthat/reference/col_barplot_horizontal.rds |binary tests/testthat/reference/col_barplot_vertical.rds |binary tests/testthat/reference/col_clustering_hclust_horizontal.rds |binary tests/testthat/reference/col_clustering_hclust_k_horizontal.rds |binary tests/testthat/reference/col_clustering_hclust_k_vertical.rds |binary tests/testthat/reference/col_clustering_hclust_vertical.rds |binary tests/testthat/reference/col_clustering_kmeans_horizontal.rds |binary 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tests/testthat/reference/row_plot_vertical.rds |binary tests/testthat/reference/row_scatter_plot_horizontal.rds |binary tests/testthat/reference/row_scatter_plot_vertical.rds |binary tests/testthat/reference/row_signal_horizontal.rds |binary tests/testthat/reference/row_signal_vertical.rds |binary tests/testthat/reference/row_summary_groups_horizontal.rds |binary tests/testthat/reference/row_summary_groups_vertical.rds |binary tests/testthat/reference/row_summary_horizontal.rds |binary tests/testthat/reference/row_summary_vertical.rds |binary tests/testthat/reference/row_title_horizontal.rds |binary tests/testthat/reference/row_title_vertical.rds |binary tests/testthat/reference/shared_axes_gap_bottom_horizontal.rds |binary tests/testthat/reference/shared_axes_gap_left_vertical.rds |binary tests/testthat/reference/shared_axes_gap_right_vertical.rds |binary tests/testthat/reference/shared_axes_gap_top_horizontal.rds |binary tests/testthat/reference/single_col_main_heatmap_horizontal.rds |binary tests/testthat/reference/single_row_main_heatmap_horizontal.rds |binary tests/testthat/reference/two_main_heatmap_horizontal.rds |binary tests/testthat/reference/two_main_heatmap_vertical.rds |binary tests/testthat/test_groups.R | 9 tests/view_reference.html | 293 +++++----- vignettes/iheatmapr-minimal.Rmd | 2 99 files changed, 293 insertions(+), 278 deletions(-)
Title: Foreach Parallel Adaptor for 'parallel'
Description: Provides a parallel backend for the %dopar% function using
the multicore functionality of the parallel package.
Author: Michelle Wallig [cre],
Revolution Analytics [aut, cph],
Steve Weston [aut]
Maintainer: Michelle Wallig <Michelle.Wallig@microsoft.com>
Diff between doMC versions 1.3.6 dated 2019-07-27 and 1.3.7 dated 2020-10-14
DESCRIPTION | 12 ++++++------ MD5 | 8 ++++---- NEWS | 11 +++++++++-- build/vignette.rds |binary inst/doc/gettingstartedMC.pdf |binary 5 files changed, 19 insertions(+), 12 deletions(-)
Title: Interface to Azure Virtual Machine Instance Metadata
Description: A simple interface to the instance metadata for a virtual machine running in Microsoft's 'Azure' cloud. This provides information about the VM's configuration, such as its processors, memory, networking, storage, and so on. Part of the 'AzureR' family of packages.
Author: Hong Ooi [aut, cre],
Microsoft [cph]
Maintainer: Hong Ooi <hongooi73@gmail.com>
Diff between AzureVMmetadata versions 1.0.0 dated 2019-08-24 and 1.0.1 dated 2020-10-14
DESCRIPTION | 10 +++++----- MD5 | 4 ++-- README.md | 2 +- 3 files changed, 8 insertions(+), 8 deletions(-)
More information about AzureVMmetadata at CRAN
Permanent link
Title: Virtual Machines in 'Azure'
Description: Functionality for working with virtual machines (VMs) in Microsoft's 'Azure' cloud: <https://azure.microsoft.com/en-us/services/virtual-machines/>. Includes facilities to deploy, startup, shutdown, and cleanly delete VMs and VM clusters. Deployment configurations can be highly customised, and can make use of existing resources as well as creating new ones. A selection of predefined configurations is provided to allow easy deployment of commonly used Linux and Windows images, including Data Science Virtual Machines. With a running VM, execute scripts and install optional extensions. Part of the 'AzureR' family of packages.
Author: Hong Ooi [aut, cre],
Microsoft [cph]
Maintainer: Hong Ooi <hongooi73@gmail.com>
Diff between AzureVM versions 2.2.1 dated 2020-08-02 and 2.2.2 dated 2020-10-14
DESCRIPTION | 10 +++++----- MD5 | 6 +++--- NEWS.md | 4 ++++ README.md | 2 +- 4 files changed, 13 insertions(+), 9 deletions(-)
Title: Interface to 'Container Instances', 'Docker Registry' and
'Kubernetes' in 'Azure'
Description: An interface to container functionality in Microsoft's 'Azure' cloud: <https://azure.microsoft.com/en-us/product-categories/containers/>. Manage 'Azure Container Instance' (ACI), 'Azure Container Registry' (ACR) and 'Azure Kubernetes Service' (AKS) resources, push and pull images, and deploy services. On the client side, lightweight shells to the 'docker', 'docker-compose', 'kubectl' and 'helm' commandline tools are provided. Part of the 'AzureR' family of packages.
Author: Hong Ooi [aut, cre],
Bill Liang [ctb] (Assistance debugging MMLS on Kubernetes),
Ramkumar Chandrasekaran [ctb] (Original blog article on Dockerising
MMLS),
Microsoft [cph]
Maintainer: Hong Ooi <hongooi73@gmail.com>
Diff between AzureContainers versions 1.3.0 dated 2020-05-06 and 1.3.1 dated 2020-10-14
DESCRIPTION | 16 ++++++++-------- MD5 | 24 ++++++++++++------------ NEWS.md | 4 ++++ README.md | 2 +- build/vignette.rds |binary inst/doc/vig01_plumber_deploy.Rmd | 2 +- inst/doc/vig01_plumber_deploy.html | 2 +- inst/doc/vig03_securing_aks_traefik.Rmd | 2 +- inst/doc/vig03_securing_aks_traefik.html | 2 +- tests/resources/hello_dockerfile | 5 ++++- tests/testthat/test00_tools.R | 15 +++++++++++---- vignettes/vig01_plumber_deploy.Rmd | 2 +- vignettes/vig03_securing_aks_traefik.Rmd | 2 +- 13 files changed, 46 insertions(+), 32 deletions(-)
More information about AzureContainers at CRAN
Permanent link
Title: Statistical Analysis of Haplotypes with Traits and Covariates
when Linkage Phase is Ambiguous
Description: Routines for the analysis of indirectly measured haplotypes. The statistical methods assume that all subjects are unrelated and that haplotypes are ambiguous (due to unknown linkage phase of the genetic markers). The main functions are: haplo.em(), haplo.glm(), haplo.score(), and haplo.power(); all of which have detailed examples in the vignette.
Author: Sinnwell JP, Schaid DJ
Maintainer: Jason P. Sinnwell <sinnwell.jason@mayo.edu>
Diff between haplo.stats versions 1.8.5 dated 2020-08-28 and 1.8.6 dated 2020-10-14
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/haplo.cc.q | 3 ++- inst/doc/haplostats.pdf |binary 4 files changed, 9 insertions(+), 8 deletions(-)
Title: An R Package for Facilitating Large-Scale Latent Variable
Analyses in Mplus
Description: Leverages the R language to automate latent variable model estimation
and interpretation using 'Mplus', a powerful latent variable modeling program
developed by Muthen and Muthen (<http://www.statmodel.com>). Specifically, this package
provides routines for creating related groups of models, running batches of
models, and extracting and tabulating model parameters and fit statistics.
Author: Michael Hallquist [aut, cre],
Joshua Wiley [aut],
Caspar van Lissa [ctb],
Daniel Morillo [ctb]
Maintainer: Michael Hallquist <michael.hallquist@gmail.com>
Diff between MplusAutomation versions 0.7-3 dated 2018-11-25 and 0.8 dated 2020-10-14
DESCRIPTION | 21 MD5 | 137 - NAMESPACE | 10 NEWS | 31 R/MplusAutomation.R | 4 R/compareModels.R | 265 +- R/createModels.R | 3604 +++++++++++++++++++-------------------- R/extractAuxDis.R | 4 R/extractEFAparameters.R |only R/extractIndirect.R | 38 R/extractModIndices.R | 2 R/extractParameters.R | 118 - R/extractSaveData.R | 35 R/methods.R | 114 - R/mplus.R | 210 +- R/mplusglm.R |only R/parseOutput.R | 595 ++++-- R/readModels.R | 134 - R/runModels.R | 339 +-- R/utilityFunctions.R | 407 ++-- build/vignette.rds |binary inst/CITATION | 2 inst/doc/Vignette.pdf |binary man/HTMLSummaryTable.Rd | 10 man/LatexSummaryTable.Rd | 10 man/MplusAutomation.Rd | 5 man/SummaryTable.Rd | 16 man/coef.mplus.model.Rd | 20 man/compareModels.Rd | 14 man/confint.mplus.model.Rd | 21 man/createMixtures.Rd | 14 man/createSyntax.Rd | 6 man/dot-mplusMultinomial.Rd |only man/extract.Rd | 25 man/extractEFAparameters.Rd |only man/extractModelParameters.Rd | 9 man/extractParameters_1file.Rd | 4 man/extractResiduals_1section.Rd |only man/extractSampstat.Rd |only man/extractSummaries_1plan.Rd | 9 man/extractSummaries_1section.Rd | 3 man/extractTech15.Rd |only man/getMultilineSection.Rd | 10 man/get_efa_nfactors.Rd |only man/isEmpty.Rd |only man/l_getSavedata_Bparams.Rd | 3 man/l_getSavedata_readRawFile.Rd | 11 man/lcademo.Rd | 6 man/long2LGMM.Rd | 21 man/matrixExtract.Rd | 12 man/mixtureSummaryTable.Rd | 10 man/mplus.traceplot.Rd | 3 man/mplusGLM.Rd |only man/mplusModeler.Rd | 57 man/mplusObject.Rd | 28 man/mplusRcov.Rd | 9 man/mplus_as.numeric.Rd | 5 man/paramExtract.Rd | 7 man/parseMplus.Rd | 2 man/plot.mplusObject.Rd | 3 man/plotGrowthMixtures.Rd | 16 man/plotLTA.Rd | 9 man/plotMixtureDensities.Rd | 10 man/plotMixtures.Rd | 16 man/prepareMplusData.Rd | 15 man/print.MplusRstructure.Rd | 8 man/readModels.Rd | 12 man/runModels.Rd | 26 man/runModels_Interactive.Rd | 11 man/showSummaryTable.Rd | 3 man/splitFilePath.Rd | 2 man/summary.mplusObject.Rd | 8 man/trainLGMM.Rd | 11 man/update.mplusObject.Rd | 3 vignettes/vignette.Rmd |only 75 files changed, 3715 insertions(+), 2858 deletions(-)
More information about MplusAutomation at CRAN
Permanent link
Title: Human 'Connectome' Project Interface
Description: Downloads and reads data from Human 'Connectome' Project
<https://db.humanconnectome.org> using Amazon Web Services ('AWS')
'S3' buckets.
Author: John Muschelli [aut, cre],
Adi Gherman [ctb]
Maintainer: John Muschelli <muschellij2@gmail.com>
Diff between neurohcp versions 0.8.1 dated 2018-05-24 and 0.9.0 dated 2020-10-14
DESCRIPTION | 12 +- MD5 | 52 +++++----- NAMESPACE | 3 NEWS.md | 5 R/bucketlist.R | 70 +++++++------ R/download_hcp_dir.R | 1 R/download_hcp_file.R | 32 ++++-- R/get_hcp_file.R | 46 ++++---- R/hcp_aws_url.R | 5 R/hcp_list_files.R | 39 +++++-- R/make_aws_call.R | 30 ++++- R/set_aws_api_key.R | 10 + README.md | 2 build/vignette.rds |binary inst/doc/hcp.R | 20 +-- inst/doc/hcp.html | 216 +++++++++++++++++++++++++++++++----------- man/bucketlist.Rd | 7 - man/download_hcp_dir.Rd | 9 + man/download_hcp_file.Rd | 9 + man/get_hcp_file.Rd | 4 man/hcp_1200_scanning_info.Rd | 4 man/hcp_900_scanning_info.Rd | 4 man/hcp_aws_url.Rd | 16 ++- man/hcp_list_files.Rd | 14 ++ man/hcp_scanning_info.Rd | 4 man/make_aws_call.Rd | 16 ++- man/set_aws_api_key.Rd | 8 + 27 files changed, 424 insertions(+), 214 deletions(-)
Title: Group Iterative Multiple Model Estimation
Description: Automated identification and estimation of group- and
individual-level relations in time series data.
Author: Stephanie Lane [aut, trl],
Kathleen Gates [aut, cre],
Zachary Fisher [aut],
Cara Arizmendi [aut],
Peter Molenaar [aut],
Michael Hallquist [ctb],
Hallie Pike [ctb],
Teague Henry [ctb],
Kelly Duffy [ctb],
Lan Luo [ctb],
Adriene Beltz [csp]
Maintainer: KM Gates <gateskm@email.unc.edu>
Diff between gimme versions 0.7-3 dated 2020-09-23 and 0.7-4 dated 2020-10-14
DESCRIPTION | 11 +++----- MD5 | 12 ++++----- R/aggSEM.R | 3 +- R/determine.subgroups.R | 4 +-- R/final.org.R | 16 +++++++----- R/sparsity.optimization.R | 54 +++++++++++++++++++++++++++++++++++-------- inst/doc/gimme_vignette.html | 4 +-- 7 files changed, 70 insertions(+), 34 deletions(-)
Title: Evaluating Individualized Treatment Rules
Description: Provides various statistical methods for evaluating Individualized Treatment Rules under randomized data. The provided metrics include Population Average Value (PAV), Population Average Prescription Effect (PAPE), Area Under Prescription Effect Curve (AUPEC). It also provides the tools to analyze Individualized Treatment Rules under budget constraints. Detailed reference in Imai and Li (2019) <arXiv:1905.05389>.
Author: Michael Lingzhi Li [aut, cre],
Kosuke Imai [aut]
Maintainer: Michael Lingzhi Li <mlli@mit.edu>
Diff between evalITR versions 0.1.0 dated 2020-02-20 and 0.2.0 dated 2020-10-14
DESCRIPTION | 12 +++--- MD5 | 40 ++++++++++---------- NAMESPACE | 2 - NEWS.md | 7 +++ R/AUPEC.R | 47 +++++++++++++----------- R/AUPECcv.R | 20 +++++----- R/PAPD.R | 46 +++++++++++------------ R/PAPDcv.R | 46 +++++++++++------------ R/PAPE.R | 44 +++++++++++----------- R/PAPEcv.R | 78 ++++++++++++++++++++-------------------- R/PAV.R | 26 ++++++------- R/PAVcv.R | 40 ++++++++++---------- README.md | 4 +- man/AUPEC.Rd | 88 +++++++++++++++++++++++---------------------- man/AUPECcv.Rd | 90 +++++++++++++++++++++++----------------------- man/PAPD.Rd | 102 ++++++++++++++++++++++++++-------------------------- man/PAPDcv.Rd | 110 ++++++++++++++++++++++++++++----------------------------- man/PAPE.Rd | 98 +++++++++++++++++++++++++------------------------- man/PAPEcv.Rd | 104 ++++++++++++++++++++++++++--------------------------- man/PAV.Rd | 88 ++++++++++++++++++++++----------------------- man/PAVcv.Rd | 94 ++++++++++++++++++++++++------------------------ 21 files changed, 601 insertions(+), 585 deletions(-)
Title: 'Dang' Associated New Goodies
Description: A collection of utility functions.
Author: Dirk Eddelbuettel with contributions by Brodie Gaslam, Kevin Denny,
Kabira Namit, Colin Gillespie, R Core, and others.
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between dang versions 0.0.11 dated 2019-10-25 and 0.0.12 dated 2020-10-14
ChangeLog | 50 ++++++++++++++++++++++++++++++++++++++++++- DESCRIPTION | 15 ++++++------ MD5 | 19 +++++++++++----- NAMESPACE | 2 + R/checkPackageAsciiCode.R |only R/muteTweets.R |only README.md | 9 ++++++- cleanup |only inst/NEWS.Rd | 7 ++++++ man/checkPackageAsciiCode.Rd |only man/ls.objects.Rd | 2 - man/muteTweeters.Rd |only src |only 13 files changed, 87 insertions(+), 17 deletions(-)
Title: Simplifies Exploratory Data Analysis
Description: Interactive data exploration with one line of code or use an easy to remember set of tidy functions for exploratory data analysis. Introduces three main verbs. explore() to graphically explore a variable or table, describe() to describe a variable or table and report() to create an automated report.
Author: Roland Krasser
Maintainer: Roland Krasser <roland.krasser@gmail.com>
Diff between explore versions 0.6.1 dated 2020-09-04 and 0.6.2 dated 2020-10-14
DESCRIPTION | 6 - MD5 | 40 ++++++------ NEWS.md | 15 ++++ R/dwh.R | 6 + R/explain.R | 28 +++++++- R/explore.R | 136 +++++++++++++++++++++++++++++------------ README.md | 37 ++++++++++- inst/doc/explore.html | 10 +-- inst/doc/explore_mtcars.R | 7 ++ inst/doc/explore_mtcars.Rmd | 25 +++++++ inst/doc/explore_mtcars.html | 46 +++++++++---- inst/doc/explore_penguins.html | 8 +- inst/doc/explore_titanic.R | 25 +++---- inst/doc/explore_titanic.Rmd | 33 +++++---- inst/doc/explore_titanic.html | 91 ++++++++++++++------------- man/dwh_fastload.Rd | 6 + man/explain_logreg.Rd | 5 + man/explain_tree.Rd | 5 + man/explore_count.Rd | 9 ++ vignettes/explore_mtcars.Rmd | 25 +++++++ vignettes/explore_titanic.Rmd | 33 +++++---- 21 files changed, 412 insertions(+), 184 deletions(-)
Title: Variable Selection for Model-Based Clustering of Mixed-Type Data
Set with Missing Values
Description: Full model selection (detection of the relevant features and estimation of the number of clusters) for model-based clustering (see reference here <doi:10.1007/s11222-016-9670-1>). Data to analyze can be continuous, categorical, integer or mixed. Moreover, missing values can occur and do not necessitate any pre-processing. Shiny application permits an easy interpretation of the results.
Author: Matthieu Marbac and Mohammed Sedki
Maintainer: Mohammed Sedki <mohammed.sedki@u-psud.fr>
Diff between VarSelLCM versions 2.1.3 dated 2018-08-29 and 2.1.3.1 dated 2020-10-14
DESCRIPTION | 6 ++-- MD5 | 51 ++++++++++++++++++------------------ build/vignette.rds |binary data/heart.rda |binary inst/doc/VarSelLCM.R |only inst/doc/VarSelLCM.pdf |binary inst/include/Algorithm.h | 2 - inst/include/AlgorithmCategorical.h | 2 - inst/include/AlgorithmContinuous.h | 2 - inst/include/AlgorithmInteger.h | 2 - inst/include/AlgorithmMixed.h | 2 - inst/include/Data.h | 2 - inst/include/DataCategorical.h | 2 - inst/include/DataContinuous.h | 2 - inst/include/DataInteger.h | 2 - inst/include/DataMixed.h | 2 - inst/include/Param.h | 2 - inst/include/ParamCategorical.h | 2 - inst/include/ParamContinuous.h | 2 - inst/include/ParamInteger.h | 2 - inst/include/ParamMixed.h | 2 - inst/include/XEM.h | 2 - inst/include/XEMCategorical.h | 2 - inst/include/XEMContinuous.h | 2 - inst/include/XEMInteger.h | 2 - inst/include/XEMMixed.h | 2 - inst/include/XEMPen.h | 2 - 27 files changed, 50 insertions(+), 49 deletions(-)
Title: Modeling Spatial Poisson and Related Point Processes
Description: Implements classes and methods for modeling spatial point patterns using inhomogeneous Poisson point processes, where the intensity surface is assumed to be analogous to a finite additive mixture of normal components and the number of components is a finite, fixed or random integer. Extensions to the marked inhomogeneous Poisson point processes case are also presented. We provide an extensive suite of R functions that can be used to simulate, visualize and model point patterns, estimate the parameters of the models, assess convergence of the algorithms and perform model selection and checking in the proposed modeling context.
Author: Jiaxun Chen <chenjiaxun9@hotmail.com>
and Athanasios (Sakis) Christou Micheas <micheasa@missouri.edu>.
Significant contributions on the package skeleton creation, plotting functions and other code by
Yuchen Wang <ycwang0712@gmail.com>
Maintainer: Sakis Micheas <micheasa@missouri.edu>
Diff between sppmix versions 1.0.2 dated 2017-11-17 and 1.0.2.1 dated 2020-10-14
DESCRIPTION | 6 MD5 | 8 build/vignette.rds |binary inst/doc/tutorials_link.html | 332 +++++++++++++++++++++++++++++------ inst/include/sppmix.h | 404 +++++++++++++++++++++---------------------- 5 files changed, 487 insertions(+), 263 deletions(-)
Title: Model-Based Clustering of Spatio-Temporal Data
Description: Mixture model is used to achieve the clustering goal. Each component is itself a mixture model of polynomial autoregressive regressions whose the logistic weights consider the spatial and temporal information.
Author: Cheam A., Marbac M., and McNicholas P.
Maintainer: Matthieu Marbac <matthieu.marbac@gmail.com>
Diff between SpaTimeClus versions 1.0 dated 2016-12-21 and 1.0.1 dated 2020-10-14
DESCRIPTION | 6 +++--- MD5 | 18 +++++++++--------- data/airparif.rda |binary inst/include/STCXEM.h | 2 +- inst/include/STCXEMnonspatial.h | 2 +- inst/include/STCXEMspatial.h | 2 +- inst/include/STCdata.h | 2 +- inst/include/STCmodel.h | 2 +- inst/include/STCparam.h | 2 +- inst/include/STCtune.h | 2 +- 10 files changed, 19 insertions(+), 19 deletions(-)
Title: RcppEigen back end for sparse least trimmed squares regression
Description: Use RcppEigen to fit least trimmed squares
regression models with an L1 penalty in order to obtain
sparse models.
Author: Andreas Alfons [aut, cre]
Maintainer: Andreas Alfons <alfons@ese.eur.nl>
Diff between sparseLTSEigen versions 0.2.0 dated 2013-11-13 and 0.2.0.1 dated 2020-10-14
DESCRIPTION | 6 - MD5 | 8 - inst/include/MatrixAddons.h | 244 +++++++++++++++++++++--------------------- inst/include/sparseLTSEigen.h | 24 ++-- src/fastLasso.cpp | 2 5 files changed, 142 insertions(+), 142 deletions(-)
More information about sparseLTSEigen at CRAN
Permanent link
Title: Regularized Continual Reassessment Method
Description: Fit a 2-parameter continual reassessment method (CRM) model (O'Quigley and Shen (1996), <doi: 10.2307/2532905>) regularized with L2 norm (Friedman et al. (2010), <doi: 10.18637/jss.v033.i01>) adjusted by the distance with the target dose limiting toxicity (DLT) rate.
Author: Xiang Li, Hong Tian, Kevin Liu, Pilar Lim
Maintainer: Xiang Li <xli256@its.jnj.com>
Diff between rCRM versions 0.1 dated 2018-11-30 and 0.1.1 dated 2020-10-14
DESCRIPTION | 6 - MD5 | 6 - inst/include/rCRM.h | 18 ++--- inst/include/rCRM_RcppExports.h | 144 ++++++++++++++++++++-------------------- 4 files changed, 87 insertions(+), 87 deletions(-)
Title: R and C++11
Description: Rcpp11 includes a header only C++11 library that facilitates
integration between R and modern C++.
Author: Romain Francois [aut, cre],
Kevin Ushey [aut],
John Chambers [ctb]
Maintainer: Romain Francois <romain@r-enthusiasts.com>
Diff between Rcpp11 versions 3.1.2.0 dated 2014-11-10 and 3.1.2.0.1 dated 2020-10-14
DESCRIPTION | 6 +++--- MD5 | 4 ++-- inst/include/Rcpp/traits/static_max_int.h | 2 +- 3 files changed, 6 insertions(+), 6 deletions(-)
Title: C++11 Header Files for 'cereal'
Description: To facilitate using 'cereal' with Rcpp.
'cereal' is a header-only C++11 serialization library.
'cereal' takes arbitrary data types and reversibly turns them into
different representations, such as compact binary encodings, XML,
or JSON. 'cereal' was designed to be fast, light-weight, and easy
to extend - it has no external dependencies and can be easily
bundled with other code or used standalone. Please see
<http://uscilab.github.io/cereal> for more information.
Author: Wush Wu, Randolph Voorhies, and Shane Grant
Maintainer: Wush Wu <wush978@gmail.com>
Diff between Rcereal versions 1.2.1 dated 2017-01-26 and 1.2.1.1 dated 2020-10-14
DESCRIPTION | 6 MD5 | 8 build/vignette.rds |binary inst/doc/intro.html | 519 +++++++++++++++++++++++++++++------ inst/include/cereal/types/memory.hpp | 2 5 files changed, 444 insertions(+), 91 deletions(-)
Title: Robust Adaptive Metropolis Algorithm
Description: Function for adapting the shape of the random walk Metropolis proposal
as specified by robust adaptive Metropolis algorithm by Vihola (2012) <DOI:10.1007/s11222-011-9269-5>.
Package also includes fast functions for rank-one Cholesky update and downdate.
These functions can be used directly from R or the corresponding C++ header files
can be easily linked to other R packages.
Author: Jouni Helske
Maintainer: Jouni Helske <jouni.helske@iki.fi>
Diff between ramcmc versions 0.1.0-1 dated 2018-05-29 and 0.1.0-1.1 dated 2020-10-14
DESCRIPTION | 6 MD5 | 10 build/vignette.rds |binary inst/doc/ramcmc.R | 118 +++---- inst/doc/ramcmc.html | 815 +++++++++++++++++++++++++++++++++----------------- inst/include/ramcmc.h | 2 6 files changed, 617 insertions(+), 334 deletions(-)
Title: Enhanced Quantitative Trading Modelling
Description: Download and organize historical market data from multiple sources like Yahoo (<https://finance.yahoo.com>), Google (<https://www.google.com/finance>), Finam (<https://www.finam.ru/profile/moex-akcii/sberbank/export/>), MOEX (<https://www.moex.com/en/derivatives/contracts.aspx>) and IQFeed (<https://www.iqfeed.net/symbolguide/index.cfm?symbolguide=lookup>). Code your trading algorithms in modern C++11 with powerful event driven tick processing API including trading costs and exchange communication latency and transform detailed data seamlessly into R. In just few lines of code you will be able to visualize every step of your trading model from tick data to multi dimensional heat maps.
Author: Stanislav Kovalevsky
Maintainer: Stanislav Kovalevsky <so.kovalevsky@gmail.com>
Diff between QuantTools versions 0.5.7 dated 2018-03-18 and 0.5.7.1 dated 2020-10-14
DESCRIPTION | 6 ++--- MD5 | 6 ++--- data/ticks.RData |binary inst/include/BackTest.h | 52 ++++++++++++++++++++++++------------------------ 4 files changed, 32 insertions(+), 32 deletions(-)
Title: Programming with Big Data -- Interface to 'ZeroMQ'
Description: 'ZeroMQ' is a well-known library for high-performance
asynchronous messaging in scalable, distributed applications. This
package provides high level R wrapper functions to easily utilize
'ZeroMQ'. We mainly focus on interactive client/server programming
frameworks. For convenience, a minimal 'ZeroMQ' library (4.2.2)
is shipped with 'pbdZMQ', which can be used if no system installation
of 'ZeroMQ' is available. A few wrapper functions compatible with
'rzmq' are also provided.
Author: Wei-Chen Chen [aut, cre],
Drew Schmidt [aut],
Christian Heckendorf [aut] (file transfer),
George Ostrouchov [aut] (Mac OSX),
Whit Armstrong [ctb] (some functions are modified from the rzmq package
for backwards compatibility),
Brian Ripley [ctb] (C code of shellexec, and Solaris),
R Core team [ctb] (some functions are modified from the R source code),
Philipp A. [ctb] (Fedora),
Elliott Sales de Andrade [ctb] (sprintf),
Spencer Aiello [ctb] (windows conf)
Maintainer: Wei-Chen Chen <wccsnow@gmail.com>
Diff between pbdZMQ versions 0.3-3 dated 2018-05-06 and 0.3-3.1 dated 2020-10-14
DESCRIPTION | 6 +- MD5 | 7 +- build |only inst/doc/pbdZMQ-guide.pdf |binary src/zmqsrc/src/condition_variable.hpp | 100 +++++++++++++++++----------------- 5 files changed, 57 insertions(+), 56 deletions(-)
Title: Access the City of Toronto Open Data Portal
Description: Access data from the "City of Toronto
Open Data Portal" (<https://open.toronto.ca>) directly from R.
Author: Sharla Gelfand [aut, cre],
City of Toronto [cph, fnd]
Maintainer: Sharla Gelfand <sharla.gelfand@gmail.com>
Diff between opendatatoronto versions 0.1.3 dated 2020-03-29 and 0.1.4 dated 2020-10-14
opendatatoronto-0.1.3/opendatatoronto/R/list_packages.R |only opendatatoronto-0.1.3/opendatatoronto/R/search_packages.R |only opendatatoronto-0.1.3/opendatatoronto/R/show_package.R |only opendatatoronto-0.1.3/opendatatoronto/tests/testthat/test-list_packages.R |only opendatatoronto-0.1.3/opendatatoronto/tests/testthat/test-search_packages.R |only opendatatoronto-0.1.3/opendatatoronto/tests/testthat/test-show_package.R |only opendatatoronto-0.1.4/opendatatoronto/DESCRIPTION | 8 +- opendatatoronto-0.1.4/opendatatoronto/MD5 | 30 ++++------ opendatatoronto-0.1.4/opendatatoronto/NEWS.md | 4 + opendatatoronto-0.1.4/opendatatoronto/R/packages.R |only opendatatoronto-0.1.4/opendatatoronto/R/utils.R | 30 ---------- opendatatoronto-0.1.4/opendatatoronto/build/vignette.rds |binary opendatatoronto-0.1.4/opendatatoronto/inst/doc/intro-opendatatoronto.html | 27 ++++++--- opendatatoronto-0.1.4/opendatatoronto/man/list_packages.Rd | 9 --- opendatatoronto-0.1.4/opendatatoronto/man/search_packages.Rd | 9 --- opendatatoronto-0.1.4/opendatatoronto/man/show_package.Rd | 8 -- opendatatoronto-0.1.4/opendatatoronto/tests/testthat/test-browse.R | 3 + opendatatoronto-0.1.4/opendatatoronto/tests/testthat/test-list_package_resources.R | 3 - opendatatoronto-0.1.4/opendatatoronto/tests/testthat/test-packages.R |only opendatatoronto-0.1.4/opendatatoronto/tests/testthat/test-utils.R | 5 + 20 files changed, 56 insertions(+), 80 deletions(-)
More information about opendatatoronto at CRAN
Permanent link
Title: Fast Multivariate Normal and Student's t Methods
Description: Provides computationally efficient tools related to
the multivariate normal and Student's t distributions. The main functionalities are:
simulating multivariate random vectors, evaluating multivariate
normal or Student's t densities and Mahalanobis distances. These tools are very efficient
thanks to the use of C++ code and of the OpenMP API.
Author: Matteo Fasiolo [aut, cre],
Thijs van den Berg [ctb]
Maintainer: Matteo Fasiolo <matteo.fasiolo@gmail.com>
Diff between mvnfast versions 0.2.5 dated 2018-01-31 and 0.2.5.1 dated 2020-10-14
DESCRIPTION | 6 MD5 | 10 build/vignette.rds |binary inst/doc/mvnfast.R | 22 - inst/doc/mvnfast.html | 807 ++++++++++++++++++++++++++++++-------------------- src/sitmo/sitmo.hpp | 2 6 files changed, 506 insertions(+), 341 deletions(-)
Title: Integrative Bayesian Analysis of Transcriptomic and CGH Data
Description: Bayesian integrative models of gene expression and comparative genomic hybridization data. The package provides inference on copy number variations and their association with gene expression.
Author: Alberto Cassese
Maintainer: Alberto Cassese <alberto.cassese@maastrichtuniversity.nl>
Diff between iBATCGH versions 1.3 dated 2015-07-06 and 1.3.1 dated 2020-10-14
DESCRIPTION | 6 +++--- MD5 | 28 ++++++++++++++-------------- data/NCI_60.rda |binary data/TCGA_lung.rda |binary inst/include/MHRProbit.h | 22 +++++++++++----------- inst/include/MHRmixture.h | 22 +++++++++++----------- inst/include/MHXIProbit.h | 26 +++++++++++++------------- inst/include/MHXImixture.h | 26 +++++++++++++------------- inst/include/MixtureMain.h | 30 +++++++++++++++--------------- inst/include/ProbitMain.h | 30 +++++++++++++++--------------- inst/include/pRMHProbit.h | 16 ++++++++-------- inst/include/pRMHXIProbit.h | 18 +++++++++--------- inst/include/pRMHXImixture.h | 18 +++++++++--------- inst/include/pRMHmixture.h | 16 ++++++++-------- inst/include/prMixture.h | 18 +++++++++--------- 15 files changed, 138 insertions(+), 138 deletions(-)
Title: Gibbs Random Fields Analysis
Description: Allows calculation on, and
sampling from Gibbs Random Fields, and more precisely general
homogeneous Potts model. The primary tool is the exact computation of
the intractable normalising constant for small rectangular lattices.
Beside the latter function, it contains method that give exact sample from the likelihood
for small enough rectangular lattices or approximate sample from the
likelihood using MCMC samplers for large lattices.
Author: Julien Stoehr, Pierre Pudlo and Nial Friel
Maintainer: Julien Stoehr <julien.stoehr@ucd.ie>
Diff between GiRaF versions 1.0 dated 2016-02-24 and 1.0.1 dated 2020-10-14
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ build/vignette.rds |binary inst/doc/GiRaF_introduction.pdf |binary inst/include/GiRaF.hpp | 2 +- inst/include/lattice.hpp | 2 +- inst/include/sampler.hpp | 2 +- 7 files changed, 12 insertions(+), 12 deletions(-)
Title: Allow Access to the 'Dlib' C++ Library
Description: Interface for 'Rcpp' users to 'dlib' <http://dlib.net> which is a
'C++' toolkit containing machine learning algorithms and computer vision tools.
It is used in a wide range of domains including robotics, embedded devices,
mobile phones, and large high performance computing environments. This package
allows R users to use 'dlib' through 'Rcpp'.
Author: Jan Wijffels, BNOSAC, Davis King and dlib package authors (see file AUTHORS)
Maintainer: Jan Wijffels <jwijffels@bnosac.be>
Diff between dlib versions 1.0.3 dated 2018-05-07 and 1.0.3.1 dated 2020-10-14
DESCRIPTION | 6 MD5 | 2260 - inst/include/dlib/algs.h | 2122 - inst/include/dlib/all/source.cpp | 184 inst/include/dlib/all_console.cpp | 18 inst/include/dlib/all_gui.cpp | 18 inst/include/dlib/any.h | 26 inst/include/dlib/any/any.h | 362 inst/include/dlib/any/any_abstract.h | 420 inst/include/dlib/any/any_decision_function.h | 420 inst/include/dlib/any/any_decision_function_abstract.h | 448 inst/include/dlib/any/any_function.h | 1772 - inst/include/dlib/any/any_function_abstract.h | 584 inst/include/dlib/any/any_function_impl.h | 1032 inst/include/dlib/any/any_function_impl2.h | 88 inst/include/dlib/any/any_trainer.h | 436 inst/include/dlib/any/any_trainer_abstract.h | 468 inst/include/dlib/array.h | 20 inst/include/dlib/array/array_kernel.h | 1560 - inst/include/dlib/array/array_kernel_abstract.h | 672 inst/include/dlib/array/array_tools.h | 76 inst/include/dlib/array/array_tools_abstract.h | 66 inst/include/dlib/array2d.h | 24 inst/include/dlib/array2d/array2d_generic_image.h | 134 inst/include/dlib/array2d/array2d_kernel.h | 998 inst/include/dlib/array2d/array2d_kernel_abstract.h | 608 inst/include/dlib/array2d/serialize_pixel_overloads.h | 742 inst/include/dlib/assert.h | 424 inst/include/dlib/base64.h | 18 inst/include/dlib/base64/base64_kernel_1.cpp | 806 inst/include/dlib/base64/base64_kernel_1.h | 184 inst/include/dlib/base64/base64_kernel_abstract.h | 242 inst/include/dlib/bayes_utils.h | 22 inst/include/dlib/bayes_utils/bayes_utils.h | 3354 +- inst/include/dlib/bayes_utils/bayes_utils_abstract.h | 2084 - inst/include/dlib/bigint.h | 86 inst/include/dlib/bigint/bigint_kernel_1.cpp | 3440 +- inst/include/dlib/bigint/bigint_kernel_1.h | 1082 inst/include/dlib/bigint/bigint_kernel_2.cpp | 3890 +- inst/include/dlib/bigint/bigint_kernel_2.h | 1134 inst/include/dlib/bigint/bigint_kernel_abstract.h | 1334 inst/include/dlib/bigint/bigint_kernel_c.h | 2260 - inst/include/dlib/binary_search_tree.h | 100 inst/include/dlib/binary_search_tree/binary_search_tree_kernel_1.h | 4128 +- inst/include/dlib/binary_search_tree/binary_search_tree_kernel_2.h | 3794 +- inst/include/dlib/binary_search_tree/binary_search_tree_kernel_abstract.h | 622 inst/include/dlib/binary_search_tree/binary_search_tree_kernel_c.h | 470 inst/include/dlib/bit_stream.h | 84 inst/include/dlib/bit_stream/bit_stream_kernel_1.cpp | 400 inst/include/dlib/bit_stream/bit_stream_kernel_1.h | 240 inst/include/dlib/bit_stream/bit_stream_kernel_abstract.h | 370 inst/include/dlib/bit_stream/bit_stream_kernel_c.h | 344 inst/include/dlib/bit_stream/bit_stream_multi_1.h | 206 inst/include/dlib/bit_stream/bit_stream_multi_abstract.h | 154 inst/include/dlib/bit_stream/bit_stream_multi_c.h | 202 inst/include/dlib/bound_function_pointer.h | 20 inst/include/dlib/bound_function_pointer/bound_function_pointer_kernel_1.h | 1548 - 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inst/include/dlib/threads/thread_pool_extension_abstract.h | 1684 - inst/include/dlib/threads/thread_specific_data_extension.h | 282 inst/include/dlib/threads/thread_specific_data_extension_abstract.h | 174 inst/include/dlib/threads/threaded_object_extension.cpp | 580 inst/include/dlib/threads/threaded_object_extension.h | 246 inst/include/dlib/threads/threaded_object_extension_abstract.h | 398 inst/include/dlib/threads/threads_kernel.h | 36 inst/include/dlib/threads/threads_kernel_1.cpp | 166 inst/include/dlib/threads/threads_kernel_1.h | 534 inst/include/dlib/threads/threads_kernel_2.cpp | 150 inst/include/dlib/threads/threads_kernel_2.h | 360 inst/include/dlib/threads/threads_kernel_abstract.h | 604 inst/include/dlib/threads/threads_kernel_shared.cpp | 658 inst/include/dlib/threads/threads_kernel_shared.h | 630 inst/include/dlib/threads/windows.h | 12 inst/include/dlib/time_this.h | 154 inst/include/dlib/timeout.h | 20 inst/include/dlib/timeout/timeout.h | 400 inst/include/dlib/timeout/timeout_abstract.h | 376 inst/include/dlib/timer.h | 20 inst/include/dlib/timer/timer.cpp | 416 inst/include/dlib/timer/timer.h | 852 inst/include/dlib/timer/timer_abstract.h | 380 inst/include/dlib/timer/timer_heavy.h | 784 inst/include/dlib/timing.h | 390 inst/include/dlib/tokenizer.h | 66 inst/include/dlib/tokenizer/tokenizer_kernel_1.cpp | 590 inst/include/dlib/tokenizer/tokenizer_kernel_1.h | 310 inst/include/dlib/tokenizer/tokenizer_kernel_abstract.h | 578 inst/include/dlib/tokenizer/tokenizer_kernel_c.h | 334 inst/include/dlib/tuple.h | 20 inst/include/dlib/tuple/tuple.h | 820 inst/include/dlib/tuple/tuple_abstract.h | 604 inst/include/dlib/type_safe_union.h | 22 inst/include/dlib/type_safe_union/type_safe_union_kernel.h | 1422 inst/include/dlib/type_safe_union/type_safe_union_kernel_abstract.h | 658 inst/include/dlib/uintn.h | 192 inst/include/dlib/unicode.h | 18 inst/include/dlib/unicode/unicode.cpp | 350 inst/include/dlib/unicode/unicode.h | 1232 inst/include/dlib/unicode/unicode_abstract.h | 466 inst/include/dlib/unordered_pair.h | 352 inst/include/dlib/vectorstream.h | 22 inst/include/dlib/vectorstream/unserialize.h | 196 inst/include/dlib/vectorstream/unserialize_abstract.h | 116 inst/include/dlib/vectorstream/vectorstream.h | 276 inst/include/dlib/vectorstream/vectorstream_abstract.h | 124 inst/include/dlib/windows_magic.h | 100 inst/include/dlib/xml_parser.h | 26 inst/include/dlib/xml_parser/xml_parser_kernel_1.h | 3056 +- inst/include/dlib/xml_parser/xml_parser_kernel_abstract.h | 552 inst/include/dlib/xml_parser/xml_parser_kernel_interfaces.h | 458 1131 files changed, 410596 insertions(+), 410596 deletions(-)
Title: Optimisation with Continuous Convex Piecewise (Linear and
Quadratic) Functions
Description: Continuous convex piecewise linear (ccpl) resp. quadratic (ccpq) functions can be implemented with sorted breakpoints and slopes. This includes functions that are ccpl (resp. ccpq) on a convex set (i.e. an interval or a point) and infinite out of the domain. These functions can be very useful for a large class of optimisation problems. Efficient manipulation (such as log(N) insertion) of such data structure is obtained with map standard template library of C++ (that hides balanced trees). This package is a wrapper on such a class based on Rcpp modules.
Author: Robin Girard
Maintainer: Robin Girard <robin.girard@mines-paristech.fr>
Diff between ConConPiWiFun versions 0.4.6 dated 2015-11-18 and 0.4.6.1 dated 2020-10-14
DESCRIPTION | 6 MD5 | 16 inst/include/ConConPiWiFun.h | 110 - inst/include/convex_function_manip.hpp | 158 +- inst/include/convex_functions_tools.hpp | 244 +-- inst/include/cplfunction.hpp | 2098 ++++++++++++++++---------------- inst/include/cplfunctionvec.hpp | 980 +++++++------- inst/include/cpqfunction.hpp | 1252 +++++++++---------- inst/include/cpqfunctionvec.hpp | 552 ++++---- 9 files changed, 2708 insertions(+), 2708 deletions(-)
Title: Regularized Model with Selecting the Number of Non-Zeros
Description: Fit linear and cox models regularized with net (L1 and Laplacian), elastic-net (L1 and L2) or lasso (L1) penalty, and their adaptive forms, such as adaptive lasso and net adjusting for signs of linked coefficients. In addition, it treats the number of non-zero coefficients as another tuning parameter and simultaneously selects with the regularization parameter. The package uses one-step coordinate descent algorithm and runs extremely fast by taking into account the sparsity structure of coefficients.
Author: Xiang Li, Shanghong Xie, Donglin Zeng and Yuanjia Wang
Maintainer: Xiang Li <xl2473@cumc.columbia.edu>
Diff between ADMMnet versions 0.1 dated 2015-12-12 and 0.1.1 dated 2020-10-14
DESCRIPTION | 6 MD5 | 6 inst/include/ADMMnet.h | 18 inst/include/ADMMnet_RcppExports.h | 668 ++++++++++++++++++------------------- 4 files changed, 349 insertions(+), 349 deletions(-)
Title: Natural Language Processing Infrastructure
Description: Basic classes and methods for Natural Language Processing.
Author: Kurt Hornik [aut, cre] (<https://orcid.org/0000-0003-4198-9911>)
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>
Diff between NLP versions 0.2-0 dated 2018-10-18 and 0.2-1 dated 2020-10-14
DESCRIPTION | 6 ++-- MD5 | 20 +++++++------- NAMESPACE | 12 ++++---- R/cleannlp.R | 65 ++++++++++++++++++++++------------------------ R/datetime.R | 2 - R/sysdata.rda |binary man/CoNLLTextDocument.Rd | 2 - man/CoNLLUTextDocument.Rd | 12 ++++---- man/TaggedTextDocument.Rd | 2 - man/Tree.Rd | 2 - man/tagsets.Rd | 2 - 11 files changed, 62 insertions(+), 63 deletions(-)
Title: Retrieve Data from the Census APIs
Description: A wrapper for the U.S. Census Bureau APIs that returns data frames of
Census data and metadata. Available datasets include the
Decennial Census, American Community Survey, Small Area Health Insurance Estimates,
Small Area Income and Poverty Estimates, Population Estimates and Projections, and more.
Author: Hannah Recht [aut, cre]
Maintainer: Hannah Recht <censusapi.rstats@gmail.com>
Diff between censusapi versions 0.7.0 dated 2020-09-07 and 0.7.1 dated 2020-10-14
DESCRIPTION | 6 +++--- MD5 | 16 ++++++++-------- NEWS.md | 5 ++++- R/metadata_functions.R | 9 +++------ README.md | 1 - inst/doc/getting-started.Rmd | 2 +- inst/doc/getting-started.html | 11 ++++++++++- man/listCensusMetadata.Rd | 19 ------------------- vignettes/getting-started.Rmd | 2 +- 9 files changed, 30 insertions(+), 41 deletions(-)
Title: The 'Monaco' Editor in 'Shiny'
Description: A 'Shiny' app including the 'Monaco' editor. The 'Monaco' editor is the code editor which powers 'VS Code'. It is particularly well developed for 'JavaScript'. In addition to the 'Monaco' editor features, the app provides prettifiers and minifiers for multiple languages, 'SCSS' and 'TypeScript' compilers, code checking for 'C' and 'C++' (requires 'cppcheck').
Author: Stéphane Laurent [aut, cre],
Microsoft Corporation [ctb, cph] (Monaco Editor),
Brijesh Brittu [ctb, cph] (monaco-ace-tokenizer),
James Long and contributors [ctb, cph] (Prettier),
Leandro Vital [ctb, cph] (Bootstrap Flash Alert),
Daniel Eden [ctb, cph] (animate.css),
Adam Schwartz [ctb, cph] (chrome-tabs),
David DeSandro [ctb, cph] (Draggabilly),
JakubPawlowicz.com [ctb, cph] (clean-css),
Mihai Bazon [ctb, cph] (terser),
Juriy "kangax" Zaytsev [ctb, cph] (HTMLMinifier),
Rodney Rehm [ctb, cph] (Sass.js),
Rich Harris [ctb, cph] (svg-parser),
Lionel Tzatzkin [ctb, cph] (scale-that-svg),
Andrei Kashcha [ctb, cph] (panzoom),
Vitaly Puzrin [ctb, cph] (markdown-it),
Alex Kocharin [ctb, cph] (markdown-it),
John Schlinkert [ctb, cph] (word-wrap),
Terence Eden [ctb, cph] (SuperTinyIcons),
www.jeasyui.com [ctb, cph] (EasyUI)
Maintainer: Stéphane Laurent <laurent_step@outlook.fr>
Diff between shinyMonacoEditor versions 1.0.0 dated 2020-09-25 and 1.1.0 dated 2020-10-14
DESCRIPTION | 9 MD5 | 22 - NEWS.md | 11 R/shinyMonacoEditor.R | 10 README.md | 5 inst/shinyApp/server.R | 369 ++++++++++++++++++++++++-- inst/shinyApp/ui.R | 13 inst/shinyApp/www/js/customMessageHandlers.js | 136 ++++++++- inst/shinyApp/www/js/functions.js | 11 inst/shinyApp/www/js/globalVariables.js | 4 inst/shinyApp/www/js/shinyMonacoEditor.js | 6 man/shinyMonacoEditor.Rd | 6 12 files changed, 539 insertions(+), 63 deletions(-)
More information about shinyMonacoEditor at CRAN
Permanent link
Title: Collaborative Filtering by Reference Classes
Description: The collaborative Filtering methodology has been widely used in recommendation systems, which
uses similarities between users or items to make recommendations. A class called CF was implemented,
where it is structured by matrices and composed of recommendation and database manipulation functions.
See Aggarwal (2016) <doi:10.1007/978-3-319-29659-3> for an overview.
Author: Thiago Lima, Jessica Kubrusly
Maintainer: Thiago Lima <thiagoaugusto@id.uff.br>
Diff between CFilt versions 0.2.0 dated 2020-09-19 and 0.2.1 dated 2020-10-14
DESCRIPTION | 8 +++---- MD5 | 8 +++---- R/CF.R | 57 +++++++++++++++++++++++++++++++++++++++--------------- R/CFbuilder.R | 14 +++++++++---- data/movies.RData |binary 5 files changed, 60 insertions(+), 27 deletions(-)
Title: Calculate Pairwise Multiple Comparisons of Mean Rank Sums
Extended
Description: For one-way layout experiments the one-way ANOVA can
be performed as an omnibus test. All-pairs multiple comparisons
tests (Tukey-Kramer test, Scheffe test, LSD-test)
and many-to-one tests (Dunnett test) for normally distributed
residuals and equal within variance are available. Furthermore,
all-pairs tests (Games-Howell test, Tamhane's T2 test,
Dunnett T3 test, Ury-Wiggins-Hochberg test) and many-to-one
(Tamhane-Dunnett Test) for normally distributed residuals
and heterogeneous variances are provided. Van der Waerden's normal
scores test for omnibus, all-pairs and many-to-one tests is
provided for non-normally distributed residuals and homogeneous
variances. The Kruskal-Wallis, BWS and Anderson-Darling
omnibus test and all-pairs tests
(Nemenyi test, Dunn test, Conover test, Dwass-Steele-Critchlow-
Fligner test) as well as many-to-one (Nemenyi test, Dunn test,
U-test) are given for the analysis of variance by ranks.
Non-parametric trend tests (Jonckheere test, Cuzick test,
Johnson-Mehrotra test, Spearman test) are included.
In addition, a Friedman-test for one-way ANOVA with repeated
measures on ranks (CRBD) and Skillings-Mack test for unbalanced
CRBD is provided with consequent all-pairs tests (Nemenyi test,
Siegel test, Miller test, Conover test, Exact test)
and many-to-one tests (Nemenyi test, Demsar test, Exact test).
A trend can be tested with Pages's test. Durbin's test
for a two-way balanced incomplete block design (BIBD) is given
in this package as well as Gore's test for CRBD with multiple
observations per cell is given. Outlier tests, Mandel's k- and
h statistic as well as functions for Type I error and Power
analysis as well as generic summary, print and plot methods
are provided.
Author: Thorsten Pohlert [aut, cre] (<https://orcid.org/0000-0003-3855-3025>)
Maintainer: Thorsten Pohlert <thorsten.pohlert@gmx.de>
Diff between PMCMRplus versions 1.5.1 dated 2020-09-27 and 1.6.0 dated 2020-10-14
DESCRIPTION | 8 ++++---- MD5 | 26 ++++++++++++++------------ NAMESPACE | 3 +++ R/flignerWolfeTest.R |only build/vignette.rds |binary inst/NEWS.Rd | 7 +++++++ inst/doc/QuickReferenceGuide.html | 13 +++++++++++-- man/bwsTrendTest.Rd | 3 +++ man/chackoTest.Rd | 3 +++ man/cuzickTest.Rd | 3 +++ man/flignerWolfeTest.Rd |only man/johnsonTest.Rd | 3 +++ man/jonckheereTest.Rd | 3 +++ man/leTest.Rd | 3 +++ man/spearmanTest.Rd | 3 +++ 15 files changed, 60 insertions(+), 18 deletions(-)
Title: General-to-Specific (GETS) Modelling and Indicator Saturation
Methods
Description: Automated General-to-Specific (GETS) modelling of the mean and variance of a regression, and indicator saturation methods for detecting and testing for structural breaks in the mean, see Pretis, Reade and Sucarrat (2018) <doi:10.18637/jss.v086.i03>.
Author: Genaro Sucarrat [aut, cre], Felix Pretis [aut], James Reade [aut], Jonas Kurle [ctb], Moritz Schwarz [ctb]
Maintainer: Genaro Sucarrat <genaro.sucarrat@bi.no>
Diff between gets versions 0.25 dated 2020-08-11 and 0.26 dated 2020-10-14
gets-0.25/gets/R/ES.R |only gets-0.25/gets/R/VaR.R |only gets-0.25/gets/R/arx.R |only gets-0.25/gets/R/as.lm.R |only gets-0.25/gets/R/biascorr.R |only gets-0.25/gets/R/blocksFun.R |only gets-0.25/gets/R/coef.arx.R |only gets-0.25/gets/R/coef.gets.R |only gets-0.25/gets/R/coef.isat.R |only gets-0.25/gets/R/diagnostics.R |only gets-0.25/gets/R/dropvar.R |only gets-0.25/gets/R/eqwma.R |only gets-0.25/gets/R/eviews.R |only gets-0.25/gets/R/fitted.arx.R |only gets-0.25/gets/R/fitted.gets.R |only gets-0.25/gets/R/fitted.isat.R |only gets-0.25/gets/R/gets.R |only gets-0.25/gets/R/gets.arx.R |only gets-0.25/gets/R/getsFun.R |only gets-0.25/gets/R/getsm.R |only gets-0.25/gets/R/getsv.R |only gets-0.25/gets/R/iim.R |only gets-0.25/gets/R/info.criterion.R |only gets-0.25/gets/R/infocrit.R |only gets-0.25/gets/R/isat.R |only gets-0.25/gets/R/isatdates.R |only gets-0.25/gets/R/isatloop.R |only gets-0.25/gets/R/isattest.R |only gets-0.25/gets/R/isatvar.R |only gets-0.25/gets/R/isatvarcorrect.R |only gets-0.25/gets/R/isvarcor.R |only gets-0.25/gets/R/isvareffcor.R |only gets-0.25/gets/R/leqwma.R |only gets-0.25/gets/R/logLik.arx.R |only gets-0.25/gets/R/logLik.gets.R |only gets-0.25/gets/R/logLik.isat.R |only gets-0.25/gets/R/mvrnormsim.R |only gets-0.25/gets/R/ols.R |only gets-0.25/gets/R/outlierscaletest.R |only gets-0.25/gets/R/outliertest.R |only gets-0.25/gets/R/paths.R |only gets-0.25/gets/R/periodicdummies.R |only gets-0.25/gets/R/plot.arx.R |only gets-0.25/gets/R/plot.gets.R |only gets-0.25/gets/R/plot.isat.R |only gets-0.25/gets/R/predict.arx.R |only gets-0.25/gets/R/predict.gets.R |only gets-0.25/gets/R/predict.isat.R |only gets-0.25/gets/R/print.arx.R |only gets-0.25/gets/R/print.gets.R |only gets-0.25/gets/R/print.isat.R |only gets-0.25/gets/R/printtex.R |only gets-0.25/gets/R/recursive.R |only gets-0.25/gets/R/regressorsMean.R |only gets-0.25/gets/R/regressorsVariance.R |only gets-0.25/gets/R/residuals.arx.R |only gets-0.25/gets/R/residuals.gets.R |only gets-0.25/gets/R/residuals.isat.R |only gets-0.25/gets/R/rsquared.R |only gets-0.25/gets/R/sigma.arx.R |only gets-0.25/gets/R/sigma.gets.R |only gets-0.25/gets/R/sigma.isat.R |only gets-0.25/gets/R/sim.R |only gets-0.25/gets/R/stata.R |only gets-0.25/gets/R/summary.arx.R |only gets-0.25/gets/R/summary.gets.R |only gets-0.25/gets/R/summary.isat.R |only gets-0.25/gets/R/terminals.R |only gets-0.25/gets/R/tim.R |only gets-0.25/gets/R/toLatex.arx.R |only gets-0.25/gets/R/toLatex.gets.R |only gets-0.25/gets/R/vargaugeiis.R |only gets-0.25/gets/R/vcov.arx.R |only gets-0.25/gets/R/vcov.gets.R |only gets-0.25/gets/R/vcov.isat.R |only gets-0.26/gets/DESCRIPTION | 8 +- gets-0.26/gets/MD5 | 112 +++++++--------------------------- gets-0.26/gets/NAMESPACE | 4 - gets-0.26/gets/NEWS | 14 ++++ gets-0.26/gets/R/gets-base-source.R |only gets-0.26/gets/R/gets-internal.R | 7 +- gets-0.26/gets/R/gets-isat-source.R |only gets-0.26/gets/build |only gets-0.26/gets/data/hpdata.rda |binary gets-0.26/gets/data/infldata.rda |binary gets-0.26/gets/data/so2data.rda |binary gets-0.26/gets/data/sp500data.rda |binary gets-0.26/gets/inst/doc |only gets-0.26/gets/man/as.lm.Rd | 4 - gets-0.26/gets/man/coef.arx.Rd | 1 gets-0.26/gets/man/coef.gets.Rd | 1 gets-0.26/gets/man/coef.isat.Rd | 1 gets-0.26/gets/man/gets-package.Rd | 4 - gets-0.26/gets/man/gmm.Rd |only gets-0.26/gets/vignettes |only 95 files changed, 55 insertions(+), 101 deletions(-)
Title: Bayesian Seemingly Unrelated Regression
Description: Bayesian seemingly unrelated regression with general variable selection and dense/sparse covariance matrix. The sparse seemingly unrelated regression is described in Banterle et al. (2018) <doi:10.1101/467019>.
Author: Marco Banterle [aut],
Zhi Zhao [aut, cre],
Leonardo Bottolo [ctb],
Sylvia Richardson [ctb],
Waldir Leoncio [ctb],
Alex Lewin [aut],
Manuela Zucknick [ctb]
Maintainer: Zhi Zhao <zhi.zhao@medisin.uio.no>
Diff between BayesSUR versions 1.2-2 dated 2020-09-08 and 1.2-3 dated 2020-10-14
DESCRIPTION | 8 ++++---- MD5 | 30 +++++++++++++++--------------- R/BayesSUR.R | 6 +++--- R/coef.BayesSUR.R | 4 ++-- R/fitted.BayesSUR.R | 4 ++-- R/getEstimator.R | 4 ++-- R/plot.BayesSUR.R | 30 ++++++++++++++++++++---------- R/predict.BayesSUR.R | 9 ++++----- R/targetGene.R | 1 + inst/doc/BayesSUR.pdf |binary man/BayesSUR.Rd | 6 +++--- man/coef.BayesSUR.Rd | 4 ++-- man/fitted.BayesSUR.Rd | 4 ++-- man/getEstimator.Rd | 4 ++-- man/plot.BayesSUR.Rd | 12 ++++++------ man/predict.BayesSUR.Rd | 11 +++++------ 16 files changed, 73 insertions(+), 64 deletions(-)
Title: Animate 'shiny' Elements when They Scroll into View using the
'scrollrevealjs' Library
Description: Allows the user to animate 'shiny' elements when scrolling to view them.
The animations are activated using the 'scrollrevealjs' library. See <https://scrollrevealjs.org/> for more information.
Author: Mohamed El Fodil Ihaddaden [aut, cre],
Julian Lloyd [ctb, cph] (scrollreveal.js library developer)
Maintainer: Mohamed El Fodil Ihaddaden <ihaddaden.fodeil@gmail.com>
Diff between scrollrevealR versions 0.1.0 dated 2020-06-25 and 0.2.0 dated 2020-10-14
scrollrevealR-0.1.0/scrollrevealR/R/use_reveal.R |only scrollrevealR-0.1.0/scrollrevealR/man/use_reveal.Rd |only scrollrevealR-0.2.0/scrollrevealR/DESCRIPTION | 21 - scrollrevealR-0.2.0/scrollrevealR/LICENSE | 2 scrollrevealR-0.2.0/scrollrevealR/MD5 | 26 - scrollrevealR-0.2.0/scrollrevealR/NEWS.md |only scrollrevealR-0.2.0/scrollrevealR/R/scroll_reveal.R | 28 - scrollrevealR-0.2.0/scrollrevealR/R/scrollreveal_dep.R |only scrollrevealR-0.2.0/scrollrevealR/README.md | 45 ++ scrollrevealR-0.2.0/scrollrevealR/build/vignette.rds |binary scrollrevealR-0.2.0/scrollrevealR/inst/doc/Introduction.R | 8 scrollrevealR-0.2.0/scrollrevealR/inst/doc/Introduction.Rmd | 19 - scrollrevealR-0.2.0/scrollrevealR/inst/doc/Introduction.html | 189 ++++++----- scrollrevealR-0.2.0/scrollrevealR/inst/scrollreveal |only scrollrevealR-0.2.0/scrollrevealR/man/html-dependencies.Rd |only scrollrevealR-0.2.0/scrollrevealR/man/scroll_reveal.Rd | 128 +++---- scrollrevealR-0.2.0/scrollrevealR/vignettes/Introduction.Rmd | 19 - 17 files changed, 284 insertions(+), 201 deletions(-)
Title: Fit, Simulate and Diagnose Exponential-Family Models for
Networks
Description: An integrated set of tools to analyze and simulate networks based on exponential-family random graph models (ERGMs). 'ergm' is a part of the Statnet suite of packages for network analysis.
Author: Mark S. Handcock [aut],
David R. Hunter [aut],
Carter T. Butts [aut],
Steven M. Goodreau [aut],
Pavel N. Krivitsky [aut, cre] (<https://orcid.org/0000-0002-9101-3362>),
Martina Morris [aut],
Li Wang [ctb],
Kirk Li [ctb],
Skye Bender-deMoll [ctb],
Chad Klumb [ctb],
Michał Bojanowski [ctb],
Ben Bolker [ctb]
Maintainer: Pavel N. Krivitsky <pavel@statnet.org>
Diff between ergm versions 3.10.4 dated 2019-06-10 and 3.11.0 dated 2020-10-14
ergm-3.10.4/ergm/R/InitErgm.bipartite.R |only ergm-3.10.4/ergm/R/ergm.check.R |only ergm-3.10.4/ergm/R/ergm.coefficient.degeneracy.R |only ergm-3.10.4/ergm/R/ergm.degeneracy.R |only ergm-3.10.4/ergm/R/ergm.mapl.R |only ergm-3.10.4/ergm/R/ergm.maple.R |only ergm-3.10.4/ergm/data/fauxhigh.withnumericattributes.RData |only ergm-3.10.4/ergm/man/as.edgelist.Rd |only ergm-3.10.4/ergm/man/ergm.degeneracy.Rd |only ergm-3.10.4/ergm/man/node-attr-api.Rd |only ergm-3.10.4/ergm/man/node-attr.Rd |only ergm-3.11.0/ergm/DESCRIPTION | 78 ergm-3.11.0/ergm/LICENSE | 4 ergm-3.11.0/ergm/LICENSE.note |only ergm-3.11.0/ergm/MD5 | 654 ergm-3.11.0/ergm/NAMESPACE | 39 ergm-3.11.0/ergm/R/InitErgmConstraint.R | 112 ergm-3.11.0/ergm/R/InitErgmProposal.R | 2 ergm-3.11.0/ergm/R/InitErgmProposal.blockdiag.R | 2 ergm-3.11.0/ergm/R/InitErgmReference.R | 2 ergm-3.11.0/ergm/R/InitErgmTerm.R | 376 ergm-3.11.0/ergm/R/InitErgmTerm.bipartite.R |only ergm-3.11.0/ergm/R/InitErgmTerm.bipartite.degree.R | 2 ergm-3.11.0/ergm/R/InitErgmTerm.coincidence.R | 2 ergm-3.11.0/ergm/R/InitErgmTerm.dgw_sp.R | 8 ergm-3.11.0/ergm/R/InitErgmTerm.extra.R | 4 ergm-3.11.0/ergm/R/InitErgmTerm.indices.R | 2 ergm-3.11.0/ergm/R/InitErgmTerm.test.R | 2 ergm-3.11.0/ergm/R/InitErgmTerm.transitiveties.R | 6 ergm-3.11.0/ergm/R/InitWtErgmProposal.R | 2 ergm-3.11.0/ergm/R/InitWtErgmTerm.R | 4 ergm-3.11.0/ergm/R/anova.ergm.R | 4 ergm-3.11.0/ergm/R/anova.ergmlist.R | 2 ergm-3.11.0/ergm/R/approx.hotelling.diff.test.R | 185 ergm-3.11.0/ergm/R/as.network.numeric.R | 13 ergm-3.11.0/ergm/R/build_term_index.R | 2 ergm-3.11.0/ergm/R/check.ErgmTerm.R | 28 ergm-3.11.0/ergm/R/control.ergm.R | 163 ergm-3.11.0/ergm/R/control.ergm.bridge.R | 21 ergm-3.11.0/ergm/R/control.gof.R | 24 ergm-3.11.0/ergm/R/control.logLik.ergm.R | 19 ergm-3.11.0/ergm/R/control.san.R | 15 ergm-3.11.0/ergm/R/control.simulate.R | 23 ergm-3.11.0/ergm/R/data.R | 6 ergm-3.11.0/ergm/R/ergm-defunct.R | 110 ergm-3.11.0/ergm/R/ergm-deprecated.R | 16 ergm-3.11.0/ergm/R/ergm-disambiguation.R | 2 ergm-3.11.0/ergm/R/ergm.CD.fixed.R | 9 ergm-3.11.0/ergm/R/ergm.Cprepare.R | 2 ergm-3.11.0/ergm/R/ergm.MCMCse.R | 6 ergm-3.11.0/ergm/R/ergm.MCMCse.lognormal.R | 6 ergm-3.11.0/ergm/R/ergm.MCMLE.R | 14 ergm-3.11.0/ergm/R/ergm.R | 94 ergm-3.11.0/ergm/R/ergm.allstats.R | 2 ergm-3.11.0/ergm/R/ergm.bounddeg.R | 2 ergm-3.11.0/ergm/R/ergm.bridge.R | 126 ergm-3.11.0/ergm/R/ergm.curved.statsmatrix.R | 2 ergm-3.11.0/ergm/R/ergm.design.R | 2 ergm-3.11.0/ergm/R/ergm.errors.R | 5 ergm-3.11.0/ergm/R/ergm.estimate.R | 5 ergm-3.11.0/ergm/R/ergm.eta.R | 83 ergm-3.11.0/ergm/R/ergm.etagrad.R | 86 ergm-3.11.0/ergm/R/ergm.etagradmult.R | 83 ergm-3.11.0/ergm/R/ergm.etamap.R | 6 ergm-3.11.0/ergm/R/ergm.geodistn.R | 2 ergm-3.11.0/ergm/R/ergm.getCDsample.R | 14 ergm-3.11.0/ergm/R/ergm.getMCMCsample.R | 11 ergm-3.11.0/ergm/R/ergm.getnetwork.R | 2 ergm-3.11.0/ergm/R/ergm.initialfit.R | 3 ergm-3.11.0/ergm/R/ergm.llik.R | 2 ergm-3.11.0/ergm/R/ergm.llik.obs.R | 2 ergm-3.11.0/ergm/R/ergm.logitreg.R | 2 ergm-3.11.0/ergm/R/ergm.mple.R | 105 ergm-3.11.0/ergm/R/ergm.pen.glm.R | 150 ergm-3.11.0/ergm/R/ergm.phase12.R | 4 ergm-3.11.0/ergm/R/ergm.pl.R | 113 ergm-3.11.0/ergm/R/ergm.reviseinit.R | 2 ergm-3.11.0/ergm/R/ergm.robmon.R | 2 ergm-3.11.0/ergm/R/ergm.san.R | 156 ergm-3.11.0/ergm/R/ergm.stepping.R | 20 ergm-3.11.0/ergm/R/ergm.stocapprox.R | 2 ergm-3.11.0/ergm/R/ergm.sufftoprob.R | 2 ergm-3.11.0/ergm/R/ergm.utility.R | 70 ergm-3.11.0/ergm/R/ergmMPLE.R | 30 ergm-3.11.0/ergm/R/ergm_estfun.R | 2 ergm-3.11.0/ergm/R/ergm_model.R | 16 ergm-3.11.0/ergm/R/ergm_model.utils.R | 2 ergm-3.11.0/ergm/R/ergm_proposal.R | 82 ergm-3.11.0/ergm/R/formula.utils.R | 28 ergm-3.11.0/ergm/R/get.node.attr.R | 303 ergm-3.11.0/ergm/R/godfather.R | 3 ergm-3.11.0/ergm/R/gof.ergm.R | 802 ergm-3.11.0/ergm/R/is.curved.R | 2 ergm-3.11.0/ergm/R/is.durational.R | 2 ergm-3.11.0/ergm/R/is.dyad.independent.R | 4 ergm-3.11.0/ergm/R/is.inCH.R | 2 ergm-3.11.0/ergm/R/locator.R | 2 ergm-3.11.0/ergm/R/logLik.ergm.R | 10 ergm-3.11.0/ergm/R/mcmc.diagnostics.ergm.R | 297 ergm-3.11.0/ergm/R/network.list.R | 2 ergm-3.11.0/ergm/R/network.update.R | 92 ergm-3.11.0/ergm/R/nonidentifiability.R |only ergm-3.11.0/ergm/R/nparam.R | 2 ergm-3.11.0/ergm/R/parallel.utils.R | 40 ergm-3.11.0/ergm/R/param_names.R | 2 ergm-3.11.0/ergm/R/pending_update_network.R | 2 ergm-3.11.0/ergm/R/predict.ergm.R |only ergm-3.11.0/ergm/R/print.ergm.R | 5 ergm-3.11.0/ergm/R/print.network.list.R | 2 ergm-3.11.0/ergm/R/print.summary.ergm.R | 79 ergm-3.11.0/ergm/R/rlebdm.R | 153 ergm-3.11.0/ergm/R/simulate.ergm.R | 102 ergm-3.11.0/ergm/R/simulate.formula.R |only ergm-3.11.0/ergm/R/summary.ergm.R | 139 ergm-3.11.0/ergm/R/summary.ergm_model.R | 12 ergm-3.11.0/ergm/R/summary.network.list.R | 2 ergm-3.11.0/ergm/R/summary.statistics.network.R | 6 ergm-3.11.0/ergm/R/to_ergm_Cdouble.R | 2 ergm-3.11.0/ergm/R/vcov.ergm.R | 2 ergm-3.11.0/ergm/R/wtd.median.R | 2 ergm-3.11.0/ergm/R/zzz.R | 4 ergm-3.11.0/ergm/build/partial.rdb |binary ergm-3.11.0/ergm/build/vignette.rds |binary ergm-3.11.0/ergm/data/datalist | 2 ergm-3.11.0/ergm/inst/CITATION | 15 ergm-3.11.0/ergm/inst/NEWS.Rd | 183 ergm-3.11.0/ergm/inst/doc/ergm-term-crossRef.R | 16 ergm-3.11.0/ergm/inst/doc/ergm-term-crossRef.Rmd | 15 ergm-3.11.0/ergm/inst/doc/ergm-term-crossRef.html |12077 +++++++++- ergm-3.11.0/ergm/inst/doc/ergm.R | 6 ergm-3.11.0/ergm/inst/doc/ergm.pdf |binary ergm-3.11.0/ergm/inst/doc/nodal_attributes.R |only ergm-3.11.0/ergm/inst/doc/nodal_attributes.Rmd |only ergm-3.11.0/ergm/inst/doc/nodal_attributes.html |only ergm-3.11.0/ergm/inst/include/MCMC.h | 12 ergm-3.11.0/ergm/inst/include/MHproposal.h | 2 ergm-3.11.0/ergm/inst/include/changestat.h | 2 ergm-3.11.0/ergm/inst/include/edgelist.h | 2 ergm-3.11.0/ergm/inst/include/edgetree.h | 2 ergm-3.11.0/ergm/inst/include/ergm_MHproposal.h | 28 ergm-3.11.0/ergm/inst/include/ergm_changestat.h | 2 ergm-3.11.0/ergm/inst/include/ergm_changestat_common.do_not_include_directly.h | 2 ergm-3.11.0/ergm/inst/include/ergm_constants.h |only ergm-3.11.0/ergm/inst/include/ergm_edgelist.h | 2 ergm-3.11.0/ergm/inst/include/ergm_edgetree.h | 2 ergm-3.11.0/ergm/inst/include/ergm_edgetree_common.do_not_include_directly.h | 10 ergm-3.11.0/ergm/inst/include/ergm_edgetree_inline.do_not_include_directly.h | 2 ergm-3.11.0/ergm/inst/include/ergm_edgetree_types.h |only ergm-3.11.0/ergm/inst/include/ergm_model.h | 2 ergm-3.11.0/ergm/inst/include/ergm_rlebdm.h | 9 ergm-3.11.0/ergm/inst/include/ergm_stubs.c | 14 ergm-3.11.0/ergm/inst/include/ergm_wtMHproposal.h | 2 ergm-3.11.0/ergm/inst/include/ergm_wtchangestat.h | 2 ergm-3.11.0/ergm/inst/include/ergm_wtedgetree.h | 2 ergm-3.11.0/ergm/inst/include/ergm_wtedgetree_inline.do_not_include_directly.h | 2 ergm-3.11.0/ergm/inst/include/ergm_wtmodel.h | 2 ergm-3.11.0/ergm/inst/include/model.h | 2 ergm-3.11.0/ergm/inst/include/wtMCMC.h | 15 ergm-3.11.0/ergm/inst/include/wtMHproposal.h | 2 ergm-3.11.0/ergm/inst/include/wtchangestat.h | 2 ergm-3.11.0/ergm/inst/include/wtedgetree.h | 2 ergm-3.11.0/ergm/inst/include/wtmodel.h | 2 ergm-3.11.0/ergm/man/Getting.Started.Rd | 4 ergm-3.11.0/ergm/man/anova.ergm.Rd | 3 ergm-3.11.0/ergm/man/approx.hotelling.diff.test.Rd | 18 ergm-3.11.0/ergm/man/as.network.numeric.Rd | 28 ergm-3.11.0/ergm/man/as.rlebdm.ergm.Rd | 2 ergm-3.11.0/ergm/man/as.rlebdm.ergm_conlist.Rd | 8 ergm-3.11.0/ergm/man/check.ErgmTerm.Rd | 21 ergm-3.11.0/ergm/man/control.ergm.Rd | 270 ergm-3.11.0/ergm/man/control.ergm.bridge.Rd | 54 ergm-3.11.0/ergm/man/control.gof.Rd | 78 ergm-3.11.0/ergm/man/control.logLik.ergm.Rd | 55 ergm-3.11.0/ergm/man/control.san.Rd | 54 ergm-3.11.0/ergm/man/control.simulate.ergm.Rd | 124 ergm-3.11.0/ergm/man/ecoli.Rd | 4 ergm-3.11.0/ergm/man/ergm-constraints.Rd | 6 ergm-3.11.0/ergm/man/ergm-defunct.Rd | 70 ergm-3.11.0/ergm/man/ergm-deprecated.Rd | 55 ergm-3.11.0/ergm/man/ergm-internal.Rd | 3 ergm-3.11.0/ergm/man/ergm-package.Rd | 4 ergm-3.11.0/ergm/man/ergm-parallel.Rd | 12 ergm-3.11.0/ergm/man/ergm-proposals.Rd | 2 ergm-3.11.0/ergm/man/ergm-references.Rd | 2 ergm-3.11.0/ergm/man/ergm-terms.Rd | 287 ergm-3.11.0/ergm/man/ergm.Rd | 67 ergm-3.11.0/ergm/man/ergm.allstats.Rd | 9 ergm-3.11.0/ergm/man/ergm.bridge.llr.Rd | 47 ergm-3.11.0/ergm/man/ergm.eta.Rd | 4 ergm-3.11.0/ergm/man/ergm.geodistdist.Rd | 2 ergm-3.11.0/ergm/man/ergm.godfather.Rd | 13 ergm-3.11.0/ergm/man/ergm.mple.Rd | 58 ergm-3.11.0/ergm/man/ergmMPLE.Rd | 15 ergm-3.11.0/ergm/man/ergm_Clist.Rd | 2 ergm-3.11.0/ergm/man/ergm_MCMC_sample.Rd | 31 ergm-3.11.0/ergm/man/ergm_model.Rd | 16 ergm-3.11.0/ergm/man/ergm_proposal.Rd | 58 ergm-3.11.0/ergm/man/ergm_proposal_table.Rd | 3 ergm-3.11.0/ergm/man/eut-upgrade.Rd | 2 ergm-3.11.0/ergm/man/faux.desert.high.Rd | 8 ergm-3.11.0/ergm/man/faux.dixon.high.Rd | 8 ergm-3.11.0/ergm/man/faux.magnolia.high.Rd | 6 ergm-3.11.0/ergm/man/faux.mesa.high.Rd | 8 ergm-3.11.0/ergm/man/florentine.Rd | 6 ergm-3.11.0/ergm/man/geweke.diag.mv.Rd | 8 ergm-3.11.0/ergm/man/gof.Rd | 42 ergm-3.11.0/ergm/man/is.curved.Rd | 2 ergm-3.11.0/ergm/man/is.durational.Rd | 5 ergm-3.11.0/ergm/man/is.dyad.independent.Rd | 10 ergm-3.11.0/ergm/man/kapferer.Rd | 6 ergm-3.11.0/ergm/man/logLik.ergm.Rd | 11 ergm-3.11.0/ergm/man/mcmc.diagnostics.Rd | 54 ergm-3.11.0/ergm/man/network.list.Rd | 9 ergm-3.11.0/ergm/man/nodal_attributes-API.Rd |only ergm-3.11.0/ergm/man/nodal_attributes.Rd |only ergm-3.11.0/ergm/man/nvattr.copy.network.Rd | 7 ergm-3.11.0/ergm/man/pending_update_network.Rd | 18 ergm-3.11.0/ergm/man/predict.formula.Rd |only ergm-3.11.0/ergm/man/rlebdm.Rd | 42 ergm-3.11.0/ergm/man/san.Rd | 112 ergm-3.11.0/ergm/man/simulate.ergm.Rd | 161 ergm-3.11.0/ergm/man/simulate.formula.Rd |only ergm-3.11.0/ergm/man/spectrum0.mvar.Rd | 16 ergm-3.11.0/ergm/man/summary.ergm.Rd | 134 ergm-3.11.0/ergm/man/summary_formula.Rd | 21 ergm-3.11.0/ergm/man/to_ergm_Cdouble.Rd | 2 ergm-3.11.0/ergm/man/update.network.Rd | 12 ergm-3.11.0/ergm/src/CD.c | 16 ergm-3.11.0/ergm/src/CD.h | 2 ergm-3.11.0/ergm/src/MCMC.c | 37 ergm-3.11.0/ergm/src/MHproposal.c | 9 ergm-3.11.0/ergm/src/MHproposals.c | 137 ergm-3.11.0/ergm/src/MHproposals.h | 2 ergm-3.11.0/ergm/src/MHproposals_bipartite.c | 2 ergm-3.11.0/ergm/src/MHproposals_bipartite.h | 2 ergm-3.11.0/ergm/src/MHproposals_block.c | 46 ergm-3.11.0/ergm/src/MHproposals_block.h | 2 ergm-3.11.0/ergm/src/MHproposals_degree.c | 2 ergm-3.11.0/ergm/src/MHproposals_degree.h | 2 ergm-3.11.0/ergm/src/MPLE.c | 4 ergm-3.11.0/ergm/src/MPLE.h | 2 ergm-3.11.0/ergm/src/SAN.c | 90 ergm-3.11.0/ergm/src/SAN.h | 23 ergm-3.11.0/ergm/src/allstatistics.c | 2 ergm-3.11.0/ergm/src/changestat.c | 2 ergm-3.11.0/ergm/src/changestats.c | 286 ergm-3.11.0/ergm/src/changestats.h | 18 ergm-3.11.0/ergm/src/changestats_coincidence.c | 2 ergm-3.11.0/ergm/src/changestats_coincidence.h | 2 ergm-3.11.0/ergm/src/changestats_concurrentties.c | 2 ergm-3.11.0/ergm/src/changestats_concurrentties.h | 2 ergm-3.11.0/ergm/src/changestats_dgw_sp.c | 25 ergm-3.11.0/ergm/src/changestats_dgw_sp.h | 6 ergm-3.11.0/ergm/src/changestats_experimental.c | 2 ergm-3.11.0/ergm/src/changestats_experimental.h | 2 ergm-3.11.0/ergm/src/changestats_homoproportion.c | 2 ergm-3.11.0/ergm/src/changestats_homoproportion.h | 2 ergm-3.11.0/ergm/src/changestats_indices.c | 2 ergm-3.11.0/ergm/src/changestats_indices.h | 2 ergm-3.11.0/ergm/src/changestats_internal.c | 2 ergm-3.11.0/ergm/src/changestats_internal.h | 2 ergm-3.11.0/ergm/src/changestats_test.c | 2 ergm-3.11.0/ergm/src/changestats_transitiveties.c | 2 ergm-3.11.0/ergm/src/changestats_transitiveties.h | 2 ergm-3.11.0/ergm/src/edgelist.c | 2 ergm-3.11.0/ergm/src/edgetree.c | 10 ergm-3.11.0/ergm/src/ergm_rlebdm.c | 2 ergm-3.11.0/ergm/src/geodist.c | 2 ergm-3.11.0/ergm/src/geodist.h | 2 ergm-3.11.0/ergm/src/godfather.c | 2 ergm-3.11.0/ergm/src/init.c | 18 ergm-3.11.0/ergm/src/model.c | 2 ergm-3.11.0/ergm/src/netstats.c | 6 ergm-3.11.0/ergm/src/netstats.h | 4 ergm-3.11.0/ergm/src/wtCD.c | 32 ergm-3.11.0/ergm/src/wtCD.h | 6 ergm-3.11.0/ergm/src/wtMCMC.c | 48 ergm-3.11.0/ergm/src/wtMHproposal.c | 10 ergm-3.11.0/ergm/src/wtMHproposals.c | 27 ergm-3.11.0/ergm/src/wtMHproposals.h | 2 ergm-3.11.0/ergm/src/wtSAN.c | 112 ergm-3.11.0/ergm/src/wtSAN.h | 27 ergm-3.11.0/ergm/src/wtchangestats.c | 58 ergm-3.11.0/ergm/src/wtchangestats.h | 2 ergm-3.11.0/ergm/src/wtedgetree.c | 10 ergm-3.11.0/ergm/src/wtgodfather.c | 8 ergm-3.11.0/ergm/src/wtmodel.c | 2 ergm-3.11.0/ergm/src/wtnetstats.c | 6 ergm-3.11.0/ergm/src/wtnetstats.h | 4 ergm-3.11.0/ergm/tests/constrain_degrees_edges.R | 4 ergm-3.11.0/ergm/tests/constrain_dind.R | 26 ergm-3.11.0/ergm/tests/constraint_conflict.R | 2 ergm-3.11.0/ergm/tests/constraint_generalized.R | 2 ergm-3.11.0/ergm/tests/drop_tests.R | 2 ergm-3.11.0/ergm/tests/ergmMPLEtest.R | 4 ergm-3.11.0/ergm/tests/ergm_term_doc_test.R | 2 ergm-3.11.0/ergm/tests/fix.curved.R | 2 ergm-3.11.0/ergm/tests/gw_sp_tests.R | 2 ergm-3.11.0/ergm/tests/hamming_termtests.R | 2 ergm-3.11.0/ergm/tests/miss_tests.CD.R | 2 ergm-3.11.0/ergm/tests/miss_tests.R | 2 ergm-3.11.0/ergm/tests/mle_offset.R | 2 ergm-3.11.0/ergm/tests/mple_largenetwork.R | 2 ergm-3.11.0/ergm/tests/mple_offset.R | 14 ergm-3.11.0/ergm/tests/nodemix.R | 2 ergm-3.11.0/ergm/tests/nodrop.R | 2 ergm-3.11.0/ergm/tests/parallel.R | 2 ergm-3.11.0/ergm/tests/requireNamespaceTest.R | 2 ergm-3.11.0/ergm/tests/runtime_diags.R | 2 ergm-3.11.0/ergm/tests/scoping.R | 2 ergm-3.11.0/ergm/tests/simpletests.R | 2 ergm-3.11.0/ergm/tests/steppingtest.R | 2 ergm-3.11.0/ergm/tests/stocapprox.R | 2 ergm-3.11.0/ergm/tests/target_offset.R | 2 ergm-3.11.0/ergm/tests/termTests.b12nodematch.R | 2 ergm-3.11.0/ergm/tests/termTests.bipartite.R | 94 ergm-3.11.0/ergm/tests/termTests.directed.R | 2 ergm-3.11.0/ergm/tests/termTests.flexible.R | 32 ergm-3.11.0/ergm/tests/termTests.undirected.R | 2 ergm-3.11.0/ergm/tests/termTests.valued.R | 2 ergm-3.11.0/ergm/tests/testgflomiss.R | 2 ergm-3.11.0/ergm/tests/testgmonkmiss.R | 2 ergm-3.11.0/ergm/tests/testthat.R | 2 ergm-3.11.0/ergm/tests/testthat/test-bd.R | 3 ergm-3.11.0/ergm/tests/testthat/test-bipartite-missing-data.R |only ergm-3.11.0/ergm/tests/testthat/test-c-ergm_model.R | 3 ergm-3.11.0/ergm/tests/testthat/test-checkpointing.R | 3 ergm-3.11.0/ergm/tests/testthat/test-ergm-godfather.R | 93 ergm-3.11.0/ergm/tests/testthat/test-ergm-san.R | 103 ergm-3.11.0/ergm/tests/testthat/test-mple-target.R | 3 ergm-3.11.0/ergm/tests/testthat/test-nonident-test.R |only ergm-3.11.0/ergm/tests/testthat/test-nonunique-names.R |only ergm-3.11.0/ergm/tests/testthat/test-predict.ergm.R |only ergm-3.11.0/ergm/tests/testthat/test-term-b12factor.R | 8 ergm-3.11.0/ergm/tests/testthat/test-term-edgecov.R |only ergm-3.11.0/ergm/tests/testthat/test-term-mm.R | 3 ergm-3.11.0/ergm/tests/testthat/test-term-options.R | 3 ergm-3.11.0/ergm/tests/testthat/test-valued-terms.R | 3 ergm-3.11.0/ergm/tests/utils_tests.R | 2 ergm-3.11.0/ergm/tests/valued_sim.R | 2 ergm-3.11.0/ergm/vignettes/Network-Callback-API.html |only ergm-3.11.0/ergm/vignettes/Proposal-Lookup-API.html |only ergm-3.11.0/ergm/vignettes/Terms-API.html |only ergm-3.11.0/ergm/vignettes/ergm-term-crossRef.Rmd | 15 ergm-3.11.0/ergm/vignettes/nodal_attributes.Rmd |only 345 files changed, 16177 insertions(+), 5457 deletions(-)
More information about CoordinateCleaner at CRAN
Permanent link
Title: Semi-Supervised Classification, Regression and Clustering
Methods
Description: Providing a collection of techniques for semi-supervised
classification, regression and clustering. In semi-supervised problem, both labeled and unlabeled
data are used to train a classifier. The package includes a collection of
semi-supervised learning techniques: self-training, co-training, democratic,
decision tree, random forest, 'S3VM' ... etc, with a fairly intuitive interface
that is easy to use.
Author: Francisco Jesús Palomares Alabarce [aut, cre]
(<https://orcid.org/0000-0002-0499-7034>),
José Manuel Benítez [ctb] (<https://orcid.org/0000-0002-2346-0793>),
Isaac Triguero [ctb] (<https://orcid.org/0000-0002-0150-0651>),
Christoph Bergmeir [ctb] (<https://orcid.org/0000-0002-3665-9021>),
Mabel González [ctb] (<https://orcid.org/0000-0003-0152-444X>)
Maintainer: Francisco Jesús Palomares Alabarce <fpalomares@correo.ugr.es>
Diff between SSLR versions 0.9.2 dated 2020-07-20 and 0.9.3 dated 2020-10-14
DESCRIPTION | 19 ++-- MD5 | 69 ++++++++++----- NAMESPACE | 24 +++++ NEWS.md | 7 + R/GRFClassifier.R |only R/KMeans.R |only R/pairwise_constraints_clustering.R |only R/train_predict.R | 103 ++++++++++++++++++++++ build/vignette.rds |binary demo/00Index | 8 + demo/GRFClassifier.R |only demo/RandomForest.R | 3 demo/cclsSSLR.R |only demo/ckmeansSSLR.R |only demo/constrained_kmeans.R |only demo/lcvqeSSLR.R |only demo/mpckmSSLR.R |only demo/seeded_kmeans.R |only inst/doc/classification.html | 70 +++++++++++++++ inst/doc/clustering.R |only inst/doc/clustering.Rmd |only inst/doc/clustering.html |only inst/doc/fit.html | 70 +++++++++++++++ inst/doc/introduction.Rmd | 2 inst/doc/introduction.html | 72 +++++++++++++++- inst/doc/models.Rmd | 14 ++- inst/doc/models.html | 13 ++ inst/doc/regression.R | 19 +++- inst/doc/regression.Rmd | 24 ++++- inst/doc/regression.html | 144 +++++++++++++++++++++++++------- man/GRFClassifierSSLR.Rd |only man/SSLRRandomForest.Rd | 3 man/cclsSSLR.Rd |only man/ckmeansSSLR.Rd |only man/cluster_labels.Rd |only man/cluster_labels.model_sslr_fitted.Rd |only man/constrained_kmeans.Rd |only man/get_centers.Rd |only man/get_centers.model_sslr_fitted.Rd |only man/lcvqeSSLR.Rd |only man/load_conclust.Rd |only man/mpckmSSLR.Rd |only man/predictions.GRFClassifierSSLR.Rd |only man/predictions.Rd |only man/predictions.model_sslr_fitted.Rd |only man/seeded_kmeans.Rd |only vignettes/clustering.Rmd |only vignettes/introduction.Rmd | 2 vignettes/models.Rmd | 14 ++- vignettes/regression.Rmd | 24 ++++- 50 files changed, 623 insertions(+), 81 deletions(-)
Title: Spatial Absorbing Markov Chains
Description: An implementation of the framework described in "Toward a unified
framework for connectivity that disentangles movement and mortality in space
and time" by Fletcher et al. (2019) <doi:10.1111/ele.13333>.
Incorporates both resistance and absorption with spatial absorbing Markov
chains (SAMC) to provide several short-term and long-term predictions for
metrics related to connectivity in landscapes.
Author: Andrew Marx [aut, cre, cph] (<https://orcid.org/0000-0002-7456-1631>),
Robert Fletcher [ctb] (<https://orcid.org/0000-0003-1717-5707>),
Miguel Acevedo [ctb] (<https://orcid.org/0000-0002-8289-1497>),
Jorge Sefair [ctb] (<https://orcid.org/0000-0002-5887-8938>),
Chao Wang [ctb] (<https://orcid.org/0000-0003-2706-5122>)
Maintainer: Andrew Marx <andrewjmarx@ufl.edu>
Diff between samc versions 1.1.0 dated 2020-05-19 and 1.2.0 dated 2020-10-14
DESCRIPTION | 17 -- MD5 | 62 ++++--- NAMESPACE | 2 NEWS.md | 12 + R/RcppExports.R | 4 R/check.R | 10 - R/cond_passage.R |only R/dispersal.R | 6 R/distribution.R | 2 R/internal-functions.R | 25 +++ R/locate.R |only R/map.R | 2 R/mortality.R | 4 R/samc-class.R | 2 R/samc.R | 178 +++++++++++++++------ R/survival.R | 2 build/vignette.rds |binary inst/doc/overview.R | 1 inst/doc/overview.Rmd | 1 inst/doc/overview.html | 117 ++++++++------ inst/doc/performance.html | 17 +- inst/doc/troubleshooting.html | 136 +++++++++------- inst/doc/tutorial-animations.html | 194 ++++++++++++----------- inst/doc/tutorial-basic.html | 301 +++++++++++++++++++------------------ inst/doc/tutorial-ggplot.html | 246 +++++++++++++++--------------- inst/doc/tutorial-temporal.html | 226 ++++++++++++++------------- man/cond_passage.Rd |only man/locate.Rd |only man/samc-class.Rd | 2 man/samc.Rd | 74 +++++++-- src/RcppExports.cpp | 13 + src/cond_passage.cpp |only tests/testthat/helper-data.R | 14 + tests/testthat/test-cond_passage.R |only vignettes/overview.Rmd | 1 35 files changed, 989 insertions(+), 682 deletions(-)
Title: Spherical Geometry Operators Using the S2 Geometry Library
Description: Provides R bindings for Google's s2 library for geometric calculations on
the sphere. High-performance constructors and exporters provide high compatibility
with existing spatial packages, transformers construct new geometries from existing
geometries, predicates provide a means to select geometries based on spatial
relationships, and accessors extract information about geometries.
Author: Dewey Dunnington [aut] (<https://orcid.org/0000-0002-9415-4582>),
Edzer Pebesma [aut, cre] (<https://orcid.org/0000-0001-8049-7069>),
Ege Rubak [aut],
Jeroen Ooms [ctb] (configure script),
Google, Inc. [cph] (Original s2geometry.io source code)
Maintainer: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Diff between s2 versions 1.0.2 dated 2020-08-03 and 1.0.3 dated 2020-10-14
DESCRIPTION | 6 ++--- MD5 | 12 +++++----- NEWS.md | 4 +++ R/s2-xptr.R | 6 ++++- README.md | 2 - inst/include/s2/encoded_s2point_vector.h | 35 +++++++++++++++++++------------ tests/testthat/test-s2-xptr.R | 2 + 7 files changed, 43 insertions(+), 24 deletions(-)
Title: Robust Mixture Discriminant Analysis
Description: Robust mixture discriminant analysis (RMDA), proposed in Bouveyron & Girard, 2009 <doi:10.1016/j.patcog.2009.03.027>, allows to build a robust supervised classifier from learning data with label noise. The idea of the proposed method is to confront an unsupervised modeling of the data with the supervised information carried by the labels of the learning data in order to detect inconsistencies. The method is able afterward to build a robust classifier taking into account the detected inconsistencies into the labels.
Author: Charles Bouveyron & Stephane Girard
Maintainer: Charles Bouveyron <charles.bouveyron@gmail.com>
Diff between robustDA versions 1.1 dated 2015-01-13 and 1.2 dated 2020-10-14
DESCRIPTION | 12 ++-- MD5 | 12 ++-- R/predict.rmda.R | 3 - R/rmda.R | 4 - R/robustDA-internal.R | 128 ------------------------------------------------ man/rmda.Rd | 2 man/robustDA-package.Rd | 5 - 7 files changed, 18 insertions(+), 148 deletions(-)
Title: Estimation of Recombination Rate and Maternal LD in Half-Sibs
Description: Paternal recombination rate and maternal linkage disequilibrium
(LD) are estimated for pairs of biallelic markers such as single nucleotide
polymorphisms (SNPs) from progeny genotypes and sire haplotypes. At least
one sire has to be double heterozygous at the investigated pairs of SNPs.
The implementation relies on paternal half-sib families. If maternal half-
sib families are used, the roles of sire/dam are swapped. Multiple families
can be considered.
Hampel, Teuscher, Gomez-Raya, Doschoris, Wittenburg (2018) "Estimation of
recombination rate and maternal linkage disequilibrium in half-sibs"
<doi:10.3389/fgene.2018.00186>.
Gomez-Raya (2012) "Maximum likelihood estimation of linkage disequilibrium
in half-sib families" <doi:10.1534/genetics.111.137521>.
Author: Dörte Wittenburg [aut, cre]
Maintainer: Dörte Wittenburg <wittenburg@fbn-dummerstorf.de>
Diff between hsrecombi versions 0.3.1 dated 2020-08-27 and 0.3.2 dated 2020-10-14
DESCRIPTION | 11 ++++++----- MD5 | 12 ++++++------ NEWS.md | 6 +++++- inst/doc/hsrecombi_workflow.R | 2 +- inst/doc/hsrecombi_workflow.Rmd | 9 +++++++-- inst/doc/hsrecombi_workflow.html | 19 ++++++++++++------- vignettes/hsrecombi_workflow.Rmd | 9 +++++++-- 7 files changed, 44 insertions(+), 24 deletions(-)
Title: Approximate the Variance of the Horvitz-Thompson Total Estimator
Description: Variance approximations for the
Horvitz-Thompson total estimator in Unequal Probability Sampling
using only first-order inclusion probabilities.
See Matei and Tillé (2005) and Haziza, Mecatti and Rao (2008) for details.
Author: Roberto Sichera [aut, cre]
Maintainer: Roberto Sichera <rob.sichera@gmail.com>
Diff between UPSvarApprox versions 0.1.1 dated 2018-10-07 and 0.1.2 dated 2020-10-14
DESCRIPTION | 14 MD5 | 12 R/approximated_variance_estimators.R | 740 +++++++++++++++++------------------ R/package-UPSvarApprox.R | 62 +- README.md | 178 ++++---- man/UPSvarApprox.Rd | 12 man/approx_var_est.Rd | 2 7 files changed, 514 insertions(+), 506 deletions(-)
Title: Regression Models for Meta Signal Detection Theory
Description: Regression methods for the meta-SDT model. The package implements methods for cognitive experiments of metacognition as described in Kristensen, S. B., Sandberg, K., & Bibby, B. M. (2020). Regression methods for metacognitive sensitivity. Journal of Mathematical Psychology, 94. <doi:10.1016/j.jmp.2019.102297>.
Author: Simon Bang Kristensen [aut, cre],
Kristian Sandberg [aut],
Bo Martin Bibby [aut]
Maintainer: Simon Bang Kristensen <sbmkristensen@health.sdu.dk>
Diff between metaSDTreg versions 0.2.0 dated 2019-11-30 and 0.2.1 dated 2020-10-14
DESCRIPTION | 28 ++++++++++++++++++---------- MD5 | 10 +++++----- R/metaSDTreg.r | 3 ++- data/simMetaData.rda |binary man/metaSDTreg.Rd | 2 ++ man/simMetaData.Rd | 6 ++++-- 6 files changed, 31 insertions(+), 18 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-06-07 0.2.0
2014-06-13 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-10-29 1.4
2015-07-30 1.3
2014-03-27 1.2
2013-08-26 1.1-13
2013-04-25 1.1-12
2013-01-17 1.1-11
2012-07-03 1.1-9
2012-07-02 1.1-8
2012-05-22 1.1-7
2012-05-14 1.1-6
2011-12-30 1.1-5
2011-10-23 1.1-4
2011-10-20 1.1-3
2011-10-12 1.1-2
2011-09-05 1.1-1
2011-06-20 1.1
2011-06-03 1.0-4
2011-05-30 1.0-3
2011-05-23 1.0-2
2011-05-18 1.0-1
2011-04-23 1.0
Title: Download and Tidy Time Series Data from the Australian Bureau of
Statistics
Description: Downloads, imports, and tidies time series data from the
Australian Bureau of Statistics <https://www.abs.gov.au/>.
Author: Matt Cowgill [aut, cre],
Zoe Meers [aut],
Jaron Lee [aut],
David Diviny [ctb],
Hugh Parsonage [ctb]
Maintainer: Matt Cowgill <mattcowgill@gmail.com>
Diff between readabs versions 0.4.5 dated 2020-10-04 and 0.4.5.1 dated 2020-10-14
DESCRIPTION | 10 ++++---- MD5 | 14 +++++------ NEWS.md | 3 ++ R/sysdata.rda |binary README.md | 25 ++++++++++++-------- build/vignette.rds |binary inst/doc/readabs_vignette.html | 45 +++++++++++++++++++++++------------- tests/testthat/test-data-uptodate.R | 8 ++++-- 8 files changed, 65 insertions(+), 40 deletions(-)
Title: Simple Git Client for R
Description: Simple git client for R based on 'libgit2' with support for SSH and
HTTPS remotes. All functions in 'gert' use basic R data types (such as vectors
and data-frames) for their arguments and return values. User credentials are
shared with command line 'git' through the git-credential store and ssh keys
stored on disk or ssh-agent. On Linux, a somewhat recent version of 'libgit2'
is required; we provide a 'PPA' for older Ubuntu 'LTS' versions.
Author: Jeroen Ooms [aut, cre] (<https://orcid.org/0000-0002-4035-0289>),
Jennifer Bryan [ctb] (<https://orcid.org/0000-0002-6983-2759>)
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>
Diff between gert versions 1.0.0 dated 2020-10-07 and 1.0.1 dated 2020-10-14
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- NEWS | 4 ++++ R/branch.R | 2 +- inst/doc/gert.html | 10 +++++----- src/branch.c | 13 ++++++++++--- src/commit.c | 14 ++++++++------ src/merge.c | 2 +- 8 files changed, 39 insertions(+), 26 deletions(-)
Title: Misc Functions of the Department of Statistics, Probability
Theory Group (Formerly: E1071), TU Wien
Description: Functions for latent class analysis, short time Fourier
transform, fuzzy clustering, support vector machines,
shortest path computation, bagged clustering, naive Bayes
classifier, ...
Author: David Meyer [aut, cre],
Evgenia Dimitriadou [aut, cph],
Kurt Hornik [aut],
Andreas Weingessel [aut],
Friedrich Leisch [aut],
Chih-Chung Chang [ctb, cph] (libsvm C++-code),
Chih-Chen Lin [ctb, cph] (libsvm C++-code)
Maintainer: David Meyer <David.Meyer@R-project.org>
Diff between e1071 versions 1.7-3 dated 2019-11-26 and 1.7-4 dated 2020-10-14
DESCRIPTION | 6 +++--- MD5 | 18 +++++++++--------- R/svm.R | 4 +++- build/vignette.rds |binary inst/NEWS.Rd | 8 ++++++++ inst/doc/svmdoc.pdf |binary inst/doc/svminternals.pdf |binary man/bclust.Rd | 2 +- man/kurtosis.Rd | 4 ++-- man/svm.Rd | 6 +++--- 10 files changed, 29 insertions(+), 19 deletions(-)
Title: A C++11 Interface for R's C Interface
Description: Provides a header only, C++11 interface to R's C
interface. Compared to other approaches 'cpp11' strives to be safe
against long jumps from the C API as well as C++ exceptions, conform
to normal R function semantics and supports interaction with 'ALTREP'
vectors.
Author: Jim Hester [aut, cre] (<https://orcid.org/0000-0002-2739-7082>),
Romain François [ctb],
Benjamin Kietzman [ctb],
RStudio [cph, fnd]
Maintainer: Jim Hester <jim.hester@rstudio.com>
Diff between cpp11 versions 0.2.2 dated 2020-10-01 and 0.2.3 dated 2020-10-14
DESCRIPTION | 6 ++-- MD5 | 12 ++++----- NEWS.md | 5 ++++ inst/include/cpp11/list.hpp | 2 - inst/include/cpp11/protect.hpp | 49 ++++++++++++++-------------------------- inst/include/cpp11/r_vector.hpp | 10 ++++---- inst/include/cpp11/strings.hpp | 2 - 7 files changed, 39 insertions(+), 47 deletions(-)
Title: Estimation and Hypothesis Testing for Threshold Regression
Description: Threshold regression models are also called two-phase regression, broken-stick regression, split-point regression, structural change models, and regression kink models, with and without interaction terms. Methods for both continuous and discontinuous threshold models are included, but the support for the former is much greater. This package is described in Fong, Huang, Gilbert and Permar (2017) <DOI:10.1186/s12859-017-1863-x>.
Author: Youyi Fong [cre],
Qianqian Chen [aut],
Shuangcheng Hua [aut],
Hyunju Son [aut],
Adam Elder [aut],
Tao Yang [aut],
Zonglin He [aut],
Simone Giannerini [aut]
Maintainer: Youyi Fong <youyifong@gmail.com>
Diff between chngpt versions 2020.8-29 dated 2020-08-30 and 2020.10-12 dated 2020-10-14
ChangeLog | 16 DESCRIPTION | 13 MD5 | 22 - NAMESPACE | 4 R/chngptm.R | 649 +++++++++++++++++++--------------- R/sim.chngpt.R | 35 + inst/doc/chngpt-vignette.pdf |binary inst/unitTests/runit.chngptm.linear.R | 22 - man/chngptm.Rd | 14 man/sim.chngpt.Rd | 27 - src/M111.cc | 15 src/fastgrid2.cc | 54 +- 12 files changed, 523 insertions(+), 348 deletions(-)
Title: Interface to 'Azure Resource Manager'
Description: A lightweight but powerful R interface to the 'Azure Resource Manager' REST API. The package exposes a comprehensive class framework and related tools for creating, updating and deleting 'Azure' resource groups, resources and templates. While 'AzureRMR' can be used to manage any 'Azure' service, it can also be extended by other packages to provide extra functionality for specific services. Part of the 'AzureR' family of packages.
Author: Hong Ooi [aut, cre],
Microsoft [cph]
Maintainer: Hong Ooi <hongooi73@gmail.com>
Diff between AzureRMR versions 2.3.5 dated 2020-07-26 and 2.3.6 dated 2020-10-14
DESCRIPTION | 10 MD5 | 22 +- NEWS.md | 5 R/build_tpl_json.R | 61 ++++- README.md | 2 man/build_template.Rd | 301 +++++++++++++++-------------- tests/resources/functions.json |only tests/resources/parameters.json | 3 tests/resources/resources.json | 7 tests/resources/template.json | 43 +++- tests/resources/template_null.json |only tests/testthat/test05a_template_builders.R | 13 + tests/testthat/test05b_template.R | 10 13 files changed, 304 insertions(+), 173 deletions(-)
Title: Find, Download and Process Sentinel-2 Data
Description: Functions to download Sentinel-2 optical images
and perform preliminary processing operations.
'sen2r' provides the instruments required to easily perform
(and eventually automate) the steps necessary to build a complete
Sentinel-2 processing chain.
A Graphical User Interface to facilitate data processing is also provided.
For additional documentation refer to the following article:
Ranghetti et al. (2020) <doi:10.1016/j.cageo.2020.104473>.
Author: Luigi Ranghetti [aut, cre] (<https://orcid.org/0000-0001-6207-5188>),
Lorenzo Busetto [aut] (<https://orcid.org/0000-0001-9634-6038>)
Maintainer: Luigi Ranghetti <luigi@ranghetti.info>
Diff between sen2r versions 1.3.8 dated 2020-08-26 and 1.3.9 dated 2020-10-14
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- NEWS.md | 8 +++++++- R/st_crs2.R | 2 +- build/vignette.rds |binary tests/testthat/test-projpar.R | 9 +++++++-- 6 files changed, 23 insertions(+), 12 deletions(-)