Title: Tensors and Neural Networks with 'GPU' Acceleration
Description: Provides functionality to define and train neural networks similar to
'PyTorch' by Paszke et al (2019) <arXiv:1912.01703> but written entirely in R
using the 'libtorch' library. Also supports low-level tensor operations and
'GPU' acceleration.
Author: Daniel Falbel [aut, cre, cph],
Javier Luraschi [aut, cph],
Dmitriy Selivanov [ctb],
Athos Damiani [ctb],
RStudio [cph]
Maintainer: Daniel Falbel <daniel@rstudio.com>
Diff between torch versions 0.1.0 dated 2020-09-28 and 0.1.1 dated 2020-10-20
DESCRIPTION | 29 ++--- MD5 | 157 +++++++++++++++++----------- NAMESPACE | 15 ++ NEWS.md | 44 +++++++ R/R7.R | 2 R/RcppExports.R | 32 +++++ R/creation-ops.R | 22 +++ R/dimname_list.R | 7 + R/gen-method.R | 20 +-- R/gen-namespace-examples.R | 7 - R/gen-namespace.R | 12 +- R/generator.R | 4 R/install.R | 48 ++++++++ R/nn-activation.R | 22 +++ R/nn-batchnorm.R | 27 +++- R/nn-utils-clip-grad.R |only R/nn.R | 54 ++++++--- R/nnf-activation.R | 27 ++++ R/nnf-loss.R | 5 R/operators.R | 58 ++++++++++ R/optim-adadelta.R |only R/optim-adagrad.R |only R/optim-adam.R | 2 R/optim-asgd.R |only R/optim-rmsprop.R |only R/optim-rprop.R |only R/optim-sgd.R | 2 R/optim.R | 2 R/package.R | 2 R/scalar.R | 2 R/tensor.R | 110 +++++++++++++++++++ R/threads.R |only R/utils-data-collate.R | 36 +++++- R/utils-data-enum.R | 11 + R/utils-data-sampler.R | 4 R/wrapers.R | 19 +++ README.md | 140 +++++++++--------------- build/vignette.rds |binary inst/doc/extending-autograd.html | 71 ++++++++++++ inst/doc/indexing.html | 71 ++++++++++++ inst/doc/installation.R |only inst/doc/installation.Rmd |only inst/doc/installation.html |only inst/doc/loading-data.html | 71 ++++++++++++ inst/doc/serialization.html | 71 ++++++++++++ inst/doc/tensor-creation.html | 71 ++++++++++++ inst/doc/using-autograd.html | 71 ++++++++++++ man/nn_contrib_sparsemax.Rd |only man/nn_utils_clip_grad_norm_.Rd |only man/nn_utils_clip_grad_value_.Rd |only man/nnf_contrib_sparsemax.Rd |only man/nnf_multilabel_soft_margin_loss.Rd | 7 + man/optim_adadelta.Rd |only man/optim_adagrad.Rd |only man/optim_asgd.Rd |only man/optim_rmsprop.Rd |only man/optim_rprop.Rd |only man/threads.Rd |only man/torch_einsum.Rd | 3 man/torch_narrow.Rd | 6 - man/torch_scalar_tensor.Rd |only man/torch_topk.Rd | 2 src/RcppExports.cpp | 90 +++++++++++++++- src/contrib.cpp |only src/gen-namespace.cpp | 4 src/lantern/lantern.h | 78 +++++++++++++ src/tensor.cpp | 66 +++++++++++ src/torch_types.h | 7 + tests/testthat/assets/print1 |only tests/testthat/assets/print2 |only tests/testthat/assets/print3 |only tests/testthat/assets/print4 |only tests/testthat/helper-optim.R | 3 tests/testthat/test-0-threads.R |only tests/testthat/test-creation-ops.R | 19 +++ tests/testthat/test-gen-namespace.R | 7 + tests/testthat/test-generator.R | 8 + tests/testthat/test-nn-activation.R |only tests/testthat/test-nn-batchnorm.R | 20 +++ tests/testthat/test-nn-utils-clip-grad.R |only tests/testthat/test-nn.R | 29 +++++ tests/testthat/test-nnf-loss.R | 8 + tests/testthat/test-operators.R | 139 ++++++++++++++++++++++++ tests/testthat/test-optim-adadelta.R |only tests/testthat/test-optim-adagrad.R |only tests/testthat/test-optim-asgd.R |only tests/testthat/test-optim-rmsprop.R |only tests/testthat/test-optim-rprop.R |only tests/testthat/test-tensor.R | 107 +++++++++++++++++++ tests/testthat/test-utils-data-dataloader.R | 76 +++++++++++++ tests/testthat/test-utils-data-enum.R | 16 ++ tests/testthat/test-utils-data-sampler.R | 33 +++++ tests/testthat/test-wrapers.R | 20 +++ tools/torchgen/R/cpp.R | 2 tools/torchgen/R/r.R | 7 - vignettes/installation.Rmd |only vignettes/tensor/index.Rmd | 4 97 files changed, 1857 insertions(+), 252 deletions(-)
Title: Development Utilities for R Packages
Description: Provides some low-level utilities to use for package
development. It currently provides managers for multiple package specific
options and registries, vignette, unit test and bibtex related utilities.
It serves as a base package for packages like NMF, RcppOctave, doRNG, and
as an incubator package for other general purposes utilities, that will
eventually be packaged separately.
It is still under heavy development and changes in the interface(s) are
more than likely to happen.
Author: Renaud Gaujoux [aut, cre]
Maintainer: Renaud Gaujoux <renozao@protonmail.com>
Diff between pkgmaker versions 0.31.1 dated 2020-03-19 and 0.32.2 dated 2020-10-20
DESCRIPTION | 21 +++--- MD5 | 134 +++++++++++++++++++++--------------------- NAMESPACE | 1 R/bibtex.R | 45 +++++++++----- R/devutils.R | 2 R/options.R | 9 +- R/user.R | 2 R/vignette.R | 44 ++++++------- man/CRAN.Rd | 8 -- man/RdSection2latex.Rd | 4 - man/Rversion.Rd | 4 - man/Sys.getenv_value.Rd | 4 - man/add_lib.Rd | 4 - man/addnames.Rd | 3 man/alphacol.Rd | 10 --- man/askUser.Rd | 9 ++ man/bibtex.Rd | 7 -- man/cite_pkg.Rd | 2 man/devutils.Rd | 6 - man/dot-silenceF.Rd | 8 -- man/exitCheck.Rd | 8 -- man/expand_list.Rd | 4 - man/file_extension.Rd | 4 - man/find_devpackage.Rd | 2 man/formals.Rd | 4 - man/graphics-utils.Rd | 4 - man/hasArg2.Rd | 4 - man/hasEnvar.Rd | 4 - man/inSweave.Rd | 4 - man/irequire.Rd | 19 ++++- man/isCRANcheck.Rd | 4 - man/iterCount.Rd | 7 -- man/latex.Rd | 18 +++-- man/libutils.Rd | 6 - man/list.data.Rd | 4 - man/load.Rd | 4 - man/load_project.Rd | 12 +++ man/local-options.Rd | 4 - man/logging.Rd | 2 man/makeUnitVignette.Rd | 8 +- man/make_vignette_auxfiles.Rd | 13 ++-- man/messagef.Rd | 8 -- man/mirrors.Rd | 7 +- man/namespace.Rd | 2 man/new2.Rd | 4 - man/oneoffVariable.Rd | 4 - man/options.Rd | 6 - man/orderVersion.Rd | 4 - man/packageExtra.Rd | 25 +++++-- man/packages.Rd | 9 -- man/postponeAction.Rd | 13 ++-- man/quickinstall.Rd | 10 ++- man/regfetch.Rd | 22 +++++- man/registry.Rd | 35 ++++++++-- man/render_notes.Rd | 36 ++++++----- man/sVariable.Rd | 4 - man/setupPackageOptions.Rd | 18 +++-- man/source_files.Rd | 2 man/str_diff.Rd | 4 - man/testRversion.Rd | 4 - man/uchecks.Rd | 4 - man/unlist_.Rd | 7 -- man/unlist_with_sep.Rd | 4 - man/using_something.Rd | 4 - man/utest.Rd | 15 +++- man/vignette.Rd | 17 +++-- man/winbuild.Rd | 4 - man/write.pkgbib.Rd | 31 +++++---- 68 files changed, 378 insertions(+), 391 deletions(-)
Title: Convert Between 'WKT' and 'GeoJSON'
Description: Convert 'WKT' to 'GeoJSON' and 'GeoJSON' to 'WKT'. Functions
included for converting between 'GeoJSON' to 'WKT', creating both
'GeoJSON' features, and non-features, creating 'WKT' from R objects
(e.g., lists, data.frames, vectors), and linting 'WKT'.
Author: Scott Chamberlain [aut, cre] (<https://orcid.org/0000-0003-1444-9135>)
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between wellknown versions 0.6.0 dated 2020-01-10 and 0.7.0 dated 2020-10-20
wellknown-0.6.0/wellknown/R/onLoad.R |only wellknown-0.6.0/wellknown/build |only wellknown-0.6.0/wellknown/inst/doc |only wellknown-0.6.0/wellknown/inst/js |only wellknown-0.6.0/wellknown/vignettes |only wellknown-0.7.0/wellknown/DESCRIPTION | 20 wellknown-0.7.0/wellknown/MD5 | 64 + wellknown-0.7.0/wellknown/NAMESPACE | 13 wellknown-0.7.0/wellknown/NEWS.md | 13 wellknown-0.7.0/wellknown/R/RcppExports.R |only wellknown-0.7.0/wellknown/R/bounding_wkt.R |only wellknown-0.7.0/wellknown/R/sp_convert.R |only wellknown-0.7.0/wellknown/R/wellknown-package.R | 9 wellknown-0.7.0/wellknown/R/wkb.R | 26 wellknown-0.7.0/wellknown/R/zzz.R | 9 wellknown-0.7.0/wellknown/README.md | 361 ----------- wellknown-0.7.0/wellknown/inst/ignore/sp_convert_egs.R |only wellknown-0.7.0/wellknown/man/as_json.Rd | 2 wellknown-0.7.0/wellknown/man/bounding_wkt.Rd |only wellknown-0.7.0/wellknown/man/geojson2wkt.Rd | 2 wellknown-0.7.0/wellknown/man/sf_convert.Rd |only wellknown-0.7.0/wellknown/man/us_cities.Rd | 6 wellknown-0.7.0/wellknown/man/validate_wkt.Rd |only wellknown-0.7.0/wellknown/man/wellknown-package.Rd | 4 wellknown-0.7.0/wellknown/man/wkb.Rd | 11 wellknown-0.7.0/wellknown/man/wkt_bounding.Rd |only wellknown-0.7.0/wellknown/man/wkt_centroid.Rd |only wellknown-0.7.0/wellknown/man/wkt_coords.Rd |only wellknown-0.7.0/wellknown/man/wkt_correct.Rd |only wellknown-0.7.0/wellknown/man/wkt_reverse.Rd |only wellknown-0.7.0/wellknown/src |only wellknown-0.7.0/wellknown/tests/testthat/test-bounding.R |only wellknown-0.7.0/wellknown/tests/testthat/test-validate_wkt.R |only wellknown-0.7.0/wellknown/tests/testthat/test-wkb_wkt.R |only wellknown-0.7.0/wellknown/tests/testthat/test-wkt_centroid.R |only wellknown-0.7.0/wellknown/tests/testthat/test-wkt_coords.R |only wellknown-0.7.0/wellknown/tests/testthat/test-wkt_reverse.R |only wellknown-0.7.0/wellknown/tests/testthat/test-wkt_wkb.R |only 38 files changed, 127 insertions(+), 413 deletions(-)
Title: Data Supporting the 'VGAM' Package
Description: Mainly data sets to accompany the VGAM package and
the book "Vector Generalized Linear and
Additive Models: With an Implementation in R" (Yee, 2015)
<DOI:10.1007/978-1-4939-2818-7>.
These are used to illustrate vector generalized
linear and additive models (VGLMs/VGAMs), and associated models
(Reduced-Rank VGLMs, Quadratic RR-VGLMs, Row-Column
Interaction Models, and constrained and unconstrained ordination
models in ecology). This package now contains some
old VGAM family functions which have been replaced by newer
ones (often because they are now special cases).
Author: Thomas Yee [aut, cre, cph],
James Gray [dtc]
Maintainer: Thomas Yee <t.yee@auckland.ac.nz>
Diff between VGAMdata versions 1.0-3 dated 2017-01-10 and 1.1-4 dated 2020-10-20
VGAMdata-1.0-3/VGAMdata/data/SardiniaHotels.rda |only VGAMdata-1.0-3/VGAMdata/data/bb.de.rda |only VGAMdata-1.0-3/VGAMdata/data/bd.us.rda |only VGAMdata-1.0-3/VGAMdata/data/belcap.rda |only VGAMdata-1.0-3/VGAMdata/data/crashf.au.rda |only VGAMdata-1.0-3/VGAMdata/data/crime.us.rda |only VGAMdata-1.0-3/VGAMdata/data/datalist |only VGAMdata-1.0-3/VGAMdata/data/ecb06it.rda |only VGAMdata-1.0-3/VGAMdata/data/ecb14it.rda |only VGAMdata-1.0-3/VGAMdata/data/exam1.rda |only VGAMdata-1.0-3/VGAMdata/data/fibre15.rda |only VGAMdata-1.0-3/VGAMdata/data/fibre1dot5.rda |only VGAMdata-1.0-3/VGAMdata/data/gala.rda |only VGAMdata-1.0-3/VGAMdata/data/hued.rda |only VGAMdata-1.0-3/VGAMdata/data/huie.rda |only VGAMdata-1.0-3/VGAMdata/data/huse.rda |only VGAMdata-1.0-3/VGAMdata/data/oly12.rda |only VGAMdata-1.0-3/VGAMdata/data/pirates1.rda |only VGAMdata-1.0-3/VGAMdata/data/pirates2.rda |only VGAMdata-1.0-3/VGAMdata/data/prison.us.rda |only VGAMdata-1.0-3/VGAMdata/data/profs.nz.rda |only VGAMdata-1.0-3/VGAMdata/data/rainfall.rda |only VGAMdata-1.0-3/VGAMdata/data/rugby.rda |only VGAMdata-1.0-3/VGAMdata/data/rugby.ties.rda |only VGAMdata-1.0-3/VGAMdata/data/students.tw.rda |only VGAMdata-1.0-3/VGAMdata/data/trapO.rda |only VGAMdata-1.0-3/VGAMdata/data/tube10.rda |only VGAMdata-1.0-3/VGAMdata/data/ugss.rda |only VGAMdata-1.0-3/VGAMdata/data/vtinpat.rda |only VGAMdata-1.0-3/VGAMdata/data/wffc.indiv.rda |only VGAMdata-1.0-3/VGAMdata/data/wffc.nc.rda |only VGAMdata-1.0-3/VGAMdata/data/wffc.rda |only VGAMdata-1.0-3/VGAMdata/data/wffc.teams.rda |only VGAMdata-1.0-3/VGAMdata/data/xs.nz.rda |only VGAMdata-1.1-4/VGAMdata/DESCRIPTION | 19 +-- VGAMdata-1.1-4/VGAMdata/MD5 | 143 ++++++++++++++---------- VGAMdata-1.1-4/VGAMdata/NAMESPACE | 43 +++++++ VGAMdata-1.1-4/VGAMdata/NEWS | 17 ++ VGAMdata-1.1-4/VGAMdata/R/family.fishing.R | 4 VGAMdata-1.1-4/VGAMdata/R/family.vd1.R |only VGAMdata-1.1-4/VGAMdata/data/SardiniaHotels.R |only VGAMdata-1.1-4/VGAMdata/data/bb.de.R |only VGAMdata-1.1-4/VGAMdata/data/bd.us.R |only VGAMdata-1.1-4/VGAMdata/data/belcap.R |only VGAMdata-1.1-4/VGAMdata/data/covid19.nz.R |only VGAMdata-1.1-4/VGAMdata/data/crashf.au.R |only VGAMdata-1.1-4/VGAMdata/data/crime.us.R |only VGAMdata-1.1-4/VGAMdata/data/ecb06it.R |only VGAMdata-1.1-4/VGAMdata/data/ecb14it.R |only VGAMdata-1.1-4/VGAMdata/data/exam1.R |only VGAMdata-1.1-4/VGAMdata/data/fibre15.R |only VGAMdata-1.1-4/VGAMdata/data/fibre1dot5.R |only VGAMdata-1.1-4/VGAMdata/data/gala.R |only VGAMdata-1.1-4/VGAMdata/data/hued.R |only VGAMdata-1.1-4/VGAMdata/data/huie.R |only VGAMdata-1.1-4/VGAMdata/data/huse.R |only VGAMdata-1.1-4/VGAMdata/data/oly12.R |only VGAMdata-1.1-4/VGAMdata/data/pirates1.R |only VGAMdata-1.1-4/VGAMdata/data/pirates2.R |only VGAMdata-1.1-4/VGAMdata/data/prison.us.R |only VGAMdata-1.1-4/VGAMdata/data/profs.nz.R |only VGAMdata-1.1-4/VGAMdata/data/rainfall.R |only VGAMdata-1.1-4/VGAMdata/data/rugby.R |only VGAMdata-1.1-4/VGAMdata/data/rugby.ties.R |only VGAMdata-1.1-4/VGAMdata/data/students.tw.R |only VGAMdata-1.1-4/VGAMdata/data/trapO.R |only VGAMdata-1.1-4/VGAMdata/data/tube10.R |only VGAMdata-1.1-4/VGAMdata/data/ugss.R |only VGAMdata-1.1-4/VGAMdata/data/vtinpat.R |only VGAMdata-1.1-4/VGAMdata/data/wffc.R |only VGAMdata-1.1-4/VGAMdata/data/wffc.indiv.R |only VGAMdata-1.1-4/VGAMdata/data/wffc.nc.R |only VGAMdata-1.1-4/VGAMdata/data/wffc.teams.R |only VGAMdata-1.1-4/VGAMdata/data/xs.nz.R |only VGAMdata-1.1-4/VGAMdata/inst/CITATION | 8 - VGAMdata-1.1-4/VGAMdata/man/DeLury.Rd | 4 VGAMdata-1.1-4/VGAMdata/man/belcap.Rd | 6 - VGAMdata-1.1-4/VGAMdata/man/covid19nz.Rd |only VGAMdata-1.1-4/VGAMdata/man/crashf.au.Rd | 2 VGAMdata-1.1-4/VGAMdata/man/crime.us.Rd | 4 VGAMdata-1.1-4/VGAMdata/man/ecbit.Rd | 4 VGAMdata-1.1-4/VGAMdata/man/hued.Rd | 8 + VGAMdata-1.1-4/VGAMdata/man/huie.Rd | 5 VGAMdata-1.1-4/VGAMdata/man/huse.Rd | 5 VGAMdata-1.1-4/VGAMdata/man/notdocumentedyet.Rd | 12 ++ VGAMdata-1.1-4/VGAMdata/man/oalog.Rd |only VGAMdata-1.1-4/VGAMdata/man/oalogUC.Rd |only VGAMdata-1.1-4/VGAMdata/man/oapospoisUC.Rd |only VGAMdata-1.1-4/VGAMdata/man/oapospoisson.Rd |only VGAMdata-1.1-4/VGAMdata/man/oazeta.Rd |only VGAMdata-1.1-4/VGAMdata/man/oazetaUC.Rd |only VGAMdata-1.1-4/VGAMdata/man/oilog.Rd |only VGAMdata-1.1-4/VGAMdata/man/oilogUC.Rd |only VGAMdata-1.1-4/VGAMdata/man/oiposbinomUC.Rd |only VGAMdata-1.1-4/VGAMdata/man/oiposbinomial.Rd |only VGAMdata-1.1-4/VGAMdata/man/oipospoisUC.Rd |only VGAMdata-1.1-4/VGAMdata/man/oipospoisson.Rd |only VGAMdata-1.1-4/VGAMdata/man/oizeta.Rd |only VGAMdata-1.1-4/VGAMdata/man/oizetaUC.Rd |only VGAMdata-1.1-4/VGAMdata/man/oizipf.Rd |only VGAMdata-1.1-4/VGAMdata/man/oizipfUC.Rd |only VGAMdata-1.1-4/VGAMdata/man/otlog.Rd |only VGAMdata-1.1-4/VGAMdata/man/otlogUC.Rd |only VGAMdata-1.1-4/VGAMdata/man/otpospoisUC.Rd |only VGAMdata-1.1-4/VGAMdata/man/otpospoisson.Rd |only VGAMdata-1.1-4/VGAMdata/man/otzeta.Rd |only VGAMdata-1.1-4/VGAMdata/man/otzetaUC.Rd |only VGAMdata-1.1-4/VGAMdata/man/posbinomUC.Rd |only VGAMdata-1.1-4/VGAMdata/man/posnegbinUC.Rd |only VGAMdata-1.1-4/VGAMdata/man/pospoisUC.Rd |only VGAMdata-1.1-4/VGAMdata/man/profs.nz.Rd | 7 + VGAMdata-1.1-4/VGAMdata/man/rugby.Rd | 12 +- VGAMdata-1.1-4/VGAMdata/man/students.tw.Rd | 2 VGAMdata-1.1-4/VGAMdata/man/tube10.Rd | 9 + VGAMdata-1.1-4/VGAMdata/man/vtinpat.Rd | 7 + VGAMdata-1.1-4/VGAMdata/man/wffc.P2star.Rd | 2 VGAMdata-1.1-4/VGAMdata/man/wffc.Rd | 4 VGAMdata-1.1-4/VGAMdata/man/wffc.indiv.Rd | 2 VGAMdata-1.1-4/VGAMdata/man/wffc.nc.Rd | 2 VGAMdata-1.1-4/VGAMdata/man/xs.nz.Rd | 4 120 files changed, 237 insertions(+), 98 deletions(-)
Title: Create Representative Records After Entity Resolution
Description: An implementation of Kaplan, Betancourt, Steorts (2020) <arXiv:1810.01538> that creates representative records for use in downstream tasks after entity resolution is performed. Multiple methods for creating the representative records (data sets) are provided.
Author: Andee Kaplan [aut, cre],
Brenda Betancourt [aut],
Rebecca C. Steorts [aut]
Maintainer: Andee Kaplan <andee.kaplan@colostate.edu>
Diff between representr versions 0.1.0 dated 2020-10-17 and 0.1.1 dated 2020-10-20
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 4 ++++ R/record_distance.R | 5 ++++- inst/doc/representr.html | 4 ++-- 5 files changed, 17 insertions(+), 10 deletions(-)
Title: Integration to 'Apache' 'Arrow'
Description: 'Apache' 'Arrow' <https://arrow.apache.org/> is a cross-language
development platform for in-memory data. It specifies a standardized
language-independent columnar memory format for flat and hierarchical data,
organized for efficient analytic operations on modern hardware. This
package provides an interface to the 'Arrow C++' library.
Author: Romain François [aut] (<https://orcid.org/0000-0002-2444-4226>),
Jeroen Ooms [aut],
Neal Richardson [aut, cre],
Javier Luraschi [ctb],
Jeffrey Wong [ctb],
Apache Arrow [aut, cph]
Maintainer: Neal Richardson <neal@ursalabs.org>
Diff between arrow versions 1.0.1 dated 2020-08-28 and 2.0.0 dated 2020-10-20
arrow-1.0.1/arrow/src/arrow_rcpp.h |only arrow-1.0.1/arrow/tests/testthat/test-Array-errors.txt |only arrow-1.0.1/arrow/tests/testthat/test-compute.R |only arrow-2.0.0/arrow/DESCRIPTION | 23 arrow-2.0.0/arrow/MD5 | 258 arrow-2.0.0/arrow/NAMESPACE | 37 arrow-2.0.0/arrow/NEWS.md | 45 arrow-2.0.0/arrow/R/array.R | 10 arrow-2.0.0/arrow/R/arrow-package.R | 25 arrow-2.0.0/arrow/R/arrowExports.R | 156 arrow-2.0.0/arrow/R/chunked-array.R | 2 arrow-2.0.0/arrow/R/compute.R | 70 arrow-2.0.0/arrow/R/csv.R | 255 arrow-2.0.0/arrow/R/dataset-factory.R |only arrow-2.0.0/arrow/R/dataset-format.R |only arrow-2.0.0/arrow/R/dataset-partition.R |only arrow-2.0.0/arrow/R/dataset-scan.R |only arrow-2.0.0/arrow/R/dataset-write.R |only arrow-2.0.0/arrow/R/dataset.R | 551 - arrow-2.0.0/arrow/R/dplyr.R | 103 arrow-2.0.0/arrow/R/expression.R | 143 arrow-2.0.0/arrow/R/feather.R | 19 arrow-2.0.0/arrow/R/filesystem.R | 236 arrow-2.0.0/arrow/R/flight.R |only arrow-2.0.0/arrow/R/install-arrow.R | 6 arrow-2.0.0/arrow/R/io.R | 35 arrow-2.0.0/arrow/R/ipc_stream.R | 12 arrow-2.0.0/arrow/R/json.R | 32 arrow-2.0.0/arrow/R/memory-pool.R | 5 arrow-2.0.0/arrow/R/parquet.R | 186 arrow-2.0.0/arrow/R/record-batch-writer.R | 12 arrow-2.0.0/arrow/R/record-batch.R | 38 arrow-2.0.0/arrow/R/schema.R | 32 arrow-2.0.0/arrow/R/struct.R | 2 arrow-2.0.0/arrow/R/table.R | 57 arrow-2.0.0/arrow/README.md | 72 arrow-2.0.0/arrow/build/vignette.rds |binary arrow-2.0.0/arrow/configure | 11 arrow-2.0.0/arrow/configure.win | 13 arrow-2.0.0/arrow/inst/build_arrow_static.sh | 2 arrow-2.0.0/arrow/inst/demo_flight_server.py |only arrow-2.0.0/arrow/inst/doc/dataset.R | 6 arrow-2.0.0/arrow/inst/doc/dataset.Rmd | 126 arrow-2.0.0/arrow/inst/doc/dataset.html | 125 arrow-2.0.0/arrow/inst/doc/flight.Rmd |only arrow-2.0.0/arrow/inst/doc/flight.html |only arrow-2.0.0/arrow/inst/doc/fs.Rmd |only arrow-2.0.0/arrow/inst/doc/fs.html |only arrow-2.0.0/arrow/inst/doc/install.Rmd | 27 arrow-2.0.0/arrow/inst/doc/install.html | 29 arrow-2.0.0/arrow/man/CsvReadOptions.Rd | 38 arrow-2.0.0/arrow/man/CsvTableReader.Rd | 2 arrow-2.0.0/arrow/man/Dataset.Rd | 3 arrow-2.0.0/arrow/man/FileFormat.Rd | 2 arrow-2.0.0/arrow/man/FileSystem.Rd | 49 arrow-2.0.0/arrow/man/FileWriteOptions.Rd |only arrow-2.0.0/arrow/man/MemoryPool.Rd | 7 arrow-2.0.0/arrow/man/ParquetFileReader.Rd | 21 arrow-2.0.0/arrow/man/ParquetFileWriter.Rd | 11 arrow-2.0.0/arrow/man/Partitioning.Rd | 2 arrow-2.0.0/arrow/man/RecordBatch.Rd | 4 arrow-2.0.0/arrow/man/RecordBatchWriter.Rd | 2 arrow-2.0.0/arrow/man/Scanner.Rd | 2 arrow-2.0.0/arrow/man/Table.Rd | 4 arrow-2.0.0/arrow/man/arrow_available.Rd | 17 arrow-2.0.0/arrow/man/copy_files.Rd |only arrow-2.0.0/arrow/man/dataset_factory.Rd | 2 arrow-2.0.0/arrow/man/default_memory_pool.Rd | 1 arrow-2.0.0/arrow/man/flight_connect.Rd |only arrow-2.0.0/arrow/man/flight_get.Rd |only arrow-2.0.0/arrow/man/hive_partition.Rd | 2 arrow-2.0.0/arrow/man/load_flight_server.Rd |only arrow-2.0.0/arrow/man/make_readable_file.Rd | 6 arrow-2.0.0/arrow/man/map_batches.Rd | 2 arrow-2.0.0/arrow/man/match_arrow.Rd |only arrow-2.0.0/arrow/man/push_data.Rd |only arrow-2.0.0/arrow/man/read_delim_arrow.Rd | 81 arrow-2.0.0/arrow/man/read_feather.Rd | 5 arrow-2.0.0/arrow/man/read_ipc_stream.Rd | 5 arrow-2.0.0/arrow/man/read_json_arrow.Rd | 3 arrow-2.0.0/arrow/man/read_parquet.Rd | 5 arrow-2.0.0/arrow/man/s3_bucket.Rd |only arrow-2.0.0/arrow/man/write_dataset.Rd |only arrow-2.0.0/arrow/man/write_feather.Rd | 3 arrow-2.0.0/arrow/man/write_ipc_stream.Rd | 3 arrow-2.0.0/arrow/man/write_parquet.Rd | 39 arrow-2.0.0/arrow/src/Makevars.in | 5 arrow-2.0.0/arrow/src/array.cpp | 65 arrow-2.0.0/arrow/src/array_from_vector.cpp | 171 arrow-2.0.0/arrow/src/array_to_vector.cpp | 523 - arrow-2.0.0/arrow/src/arraydata.cpp | 7 arrow-2.0.0/arrow/src/arrowExports.cpp | 5453 ++++++------ arrow-2.0.0/arrow/src/arrow_cpp11.h |only arrow-2.0.0/arrow/src/arrow_exports.h | 14 arrow-2.0.0/arrow/src/arrow_types.h | 75 arrow-2.0.0/arrow/src/buffer.cpp | 18 arrow-2.0.0/arrow/src/chunkedarray.cpp | 13 arrow-2.0.0/arrow/src/compression.cpp | 4 arrow-2.0.0/arrow/src/compute.cpp | 42 arrow-2.0.0/arrow/src/csv.cpp | 141 arrow-2.0.0/arrow/src/dataset.cpp | 100 arrow-2.0.0/arrow/src/datatype.cpp | 55 arrow-2.0.0/arrow/src/feather.cpp | 14 arrow-2.0.0/arrow/src/filesystem.cpp | 76 arrow-2.0.0/arrow/src/io.cpp | 8 arrow-2.0.0/arrow/src/json.cpp | 14 arrow-2.0.0/arrow/src/memorypool.cpp | 2 arrow-2.0.0/arrow/src/message.cpp | 2 arrow-2.0.0/arrow/src/nameof.h |only arrow-2.0.0/arrow/src/parquet.cpp | 73 arrow-2.0.0/arrow/src/py-to-r.cpp | 54 arrow-2.0.0/arrow/src/recordbatch.cpp | 85 arrow-2.0.0/arrow/src/recordbatchreader.cpp | 2 arrow-2.0.0/arrow/src/recordbatchwriter.cpp | 6 arrow-2.0.0/arrow/src/schema.cpp | 41 arrow-2.0.0/arrow/src/symbols.cpp | 57 arrow-2.0.0/arrow/src/table.cpp | 247 arrow-2.0.0/arrow/tests/testthat/helper-roundtrip.R |only arrow-2.0.0/arrow/tests/testthat/helper-skip.R | 5 arrow-2.0.0/arrow/tests/testthat/test-Array.R | 96 arrow-2.0.0/arrow/tests/testthat/test-RecordBatch.R | 22 arrow-2.0.0/arrow/tests/testthat/test-Table.R | 37 arrow-2.0.0/arrow/tests/testthat/test-arrow.R | 13 arrow-2.0.0/arrow/tests/testthat/test-chunked-array.R | 27 arrow-2.0.0/arrow/tests/testthat/test-compute-aggregate.R |only arrow-2.0.0/arrow/tests/testthat/test-compute-vector.R |only arrow-2.0.0/arrow/tests/testthat/test-csv.R | 80 arrow-2.0.0/arrow/tests/testthat/test-data-type.R | 4 arrow-2.0.0/arrow/tests/testthat/test-dataset.R | 425 arrow-2.0.0/arrow/tests/testthat/test-dplyr.R | 131 arrow-2.0.0/arrow/tests/testthat/test-expression.R | 17 arrow-2.0.0/arrow/tests/testthat/test-filesystem.R | 28 arrow-2.0.0/arrow/tests/testthat/test-install-arrow.R | 11 arrow-2.0.0/arrow/tests/testthat/test-metadata.R | 8 arrow-2.0.0/arrow/tests/testthat/test-parquet.R | 35 arrow-2.0.0/arrow/tests/testthat/test-python.R | 2 arrow-2.0.0/arrow/tests/testthat/test-record-batch-reader.R | 2 arrow-2.0.0/arrow/tests/testthat/test-s3-minio.R |only arrow-2.0.0/arrow/tests/testthat/test-s3.R |only arrow-2.0.0/arrow/tests/testthat/test-schema.R | 18 arrow-2.0.0/arrow/tools/autobrew | 7 arrow-2.0.0/arrow/tools/linuxlibs.R | 54 arrow-2.0.0/arrow/vignettes/dataset.Rmd | 126 arrow-2.0.0/arrow/vignettes/flight.Rmd |only arrow-2.0.0/arrow/vignettes/fs.Rmd |only arrow-2.0.0/arrow/vignettes/install.Rmd | 27 146 files changed, 7091 insertions(+), 4533 deletions(-)
Title: A Soil Survey Toolkit
Description: Miscellaneous soil data management, summary, visualization, and conversion utilities to support soil survey.
Author: Dylan Beaudette [cre],
Jay Skovlin [aut],
Stephen Roecker [aut],
USDA-NRCS Soil Survey Staff [ctb]
Maintainer: Dylan Beaudette <dylan.beaudette@usda.gov>
Diff between sharpshootR versions 1.6 dated 2020-01-30 and 1.6.5 dated 2020-10-20
DESCRIPTION | 14 MD5 | 62 +- NAMESPACE | 332 +++++++------ R/CDECquery.R | 165 ++++++ R/PCP_plot.R | 24 R/PLSS2LL.R | 421 ++++++++--------- R/SoilTaxonomyDendrogram.R | 143 ++--- R/aspect.plot.R | 7 R/data-documentation.R |only R/plotAvailWater.R | 3 R/plotProfileDendrogram.R | 54 +- R/plotSoilRelationGraph.R | 4 R/sampleRasterStackByMU.R | 655 +++++++++++++-------------- R/vizFlatsPosition.R |only R/vizGeomorphicComponent.R | 90 +++ R/vizHillslopePosition.R | 117 ++++ R/vizMountainPosition.R |only R/vizTerracePosition.R |only R/water-balance.R | 139 ++++- data/table5.2.rda |only inst |only man/CDECquery.Rd | 320 ++++++------- man/FFD.Rd | 8 man/LL2PLSS.Rd | 89 +-- man/PCP_plot.Rd | 7 man/SoilTaxonomyDendrogram.Rd | 214 ++++---- man/monthlyWB.Rd | 139 +++-- man/plotAvailWater.Rd | 48 + man/plotWB.Rd |only man/sampleRasterStackByMU.Rd | 95 +-- man/table5.2.Rd |only man/vizFlatsPosition.Rd |only man/vizGeomorphicComponent.Rd |only man/vizHillslopePosition.Rd | 108 ++-- man/vizMountainPosition.Rd |only man/vizTerracePosition.Rd |only tests/testthat/test-SoilTaxonomyDendrogram.R |only tests/testthat/test-multinominal2logical.R | 10 tests/testthat/test-plotProfileDendrogram.R |only 39 files changed, 1934 insertions(+), 1334 deletions(-)
Title: A Fully Featured Logging Framework
Description: A flexible, feature-rich yet light-weight logging
framework based on 'R6' classes. It supports hierarchical loggers,
custom log levels, arbitrary data fields in log events, logging to
plaintext, 'JSON', (rotating) files, memory buffers. For extra
appenders that support logging to databases, email and push
notifications see the the package lgr.app.
Author: Stefan Fleck [aut, cre] (<https://orcid.org/0000-0003-3344-9851>)
Maintainer: Stefan Fleck <stefan.b.fleck@gmail.com>
Diff between lgr versions 0.3.4 dated 2020-03-20 and 0.4.1 dated 2020-10-20
lgr-0.3.4/lgr/R/print_Appender.R |only lgr-0.3.4/lgr/R/print_LogEvent.R |only lgr-0.3.4/lgr/R/print_Logger.R |only lgr-0.3.4/lgr/R/read_json_log.R |only lgr-0.3.4/lgr/R/utils-test.R |only lgr-0.3.4/lgr/man/AppenderDbi.Rd |only lgr-0.3.4/lgr/man/AppenderDigest.Rd |only lgr-0.3.4/lgr/man/AppenderDt.Rd |only lgr-0.3.4/lgr/man/AppenderGmail.Rd |only lgr-0.3.4/lgr/man/AppenderJson.Rd |only lgr-0.3.4/lgr/man/AppenderMail.Rd |only lgr-0.3.4/lgr/man/AppenderPushbullet.Rd |only lgr-0.3.4/lgr/man/AppenderRjdbc.Rd |only lgr-0.3.4/lgr/man/AppenderSendmail.Rd |only lgr-0.3.4/lgr/man/AppenderSyslog.Rd |only lgr-0.3.4/lgr/man/LayoutDbi.Rd |only lgr-0.3.4/lgr/man/default_should_flush.Rd |only lgr-0.3.4/lgr/man/select_dbi_layout.Rd |only lgr-0.3.4/lgr/tests/testthat/test_AppenderDbi.R |only lgr-0.4.1/lgr/DESCRIPTION | 39 lgr-0.4.1/lgr/MD5 | 173 - lgr-0.4.1/lgr/NAMESPACE | 33 lgr-0.4.1/lgr/NEWS.md | 55 lgr-0.4.1/lgr/R/Appender.R | 2295 ++------------- lgr-0.4.1/lgr/R/Filter.R | 248 + lgr-0.4.1/lgr/R/Filterable.R | 90 lgr-0.4.1/lgr/R/Layout.R | 806 +---- lgr-0.4.1/lgr/R/LogEvent.R | 457 ++ lgr-0.4.1/lgr/R/Logger.R | 675 ++-- lgr-0.4.1/lgr/R/basic_config.R | 21 lgr-0.4.1/lgr/R/default_functions.R | 48 lgr-0.4.1/lgr/R/event_list.R |only lgr-0.4.1/lgr/R/get_logger.R | 3 lgr-0.4.1/lgr/R/lgr-package.R | 1 lgr-0.4.1/lgr/R/log_levels.R | 44 lgr-0.4.1/lgr/R/logger_config.R | 19 lgr-0.4.1/lgr/R/read_json_lines.R |only lgr-0.4.1/lgr/R/simple_logging.R | 38 lgr-0.4.1/lgr/R/utils-sfmisc.R | 158 - lgr-0.4.1/lgr/R/utils.R | 137 lgr-0.4.1/lgr/README.md | 68 lgr-0.4.1/lgr/build/vignette.rds |binary lgr-0.4.1/lgr/inst/WORDLIST | 15 lgr-0.4.1/lgr/inst/doc/lgr.R | 41 lgr-0.4.1/lgr/inst/doc/lgr.Rmd | 15 lgr-0.4.1/lgr/inst/doc/lgr.html | 814 ++--- lgr-0.4.1/lgr/man/Appender.Rd | 188 - lgr-0.4.1/lgr/man/AppenderBuffer.Rd | 315 -- lgr-0.4.1/lgr/man/AppenderConsole.Rd | 148 lgr-0.4.1/lgr/man/AppenderFile.Rd | 279 + lgr-0.4.1/lgr/man/AppenderFileRotating.Rd | 286 + lgr-0.4.1/lgr/man/AppenderFileRotatingDate.Rd |only lgr-0.4.1/lgr/man/AppenderFileRotatingTime.Rd |only lgr-0.4.1/lgr/man/AppenderMemory.Rd | 301 + lgr-0.4.1/lgr/man/AppenderTable.Rd | 152 lgr-0.4.1/lgr/man/CannotInitializeAbstractClassError.Rd |only lgr-0.4.1/lgr/man/EventFilter.Rd | 136 lgr-0.4.1/lgr/man/FilterForceLevel.Rd |only lgr-0.4.1/lgr/man/FilterInject.Rd |only lgr-0.4.1/lgr/man/Filterable.Rd | 142 lgr-0.4.1/lgr/man/Layout.Rd | 90 lgr-0.4.1/lgr/man/LayoutFormat.Rd | 236 + lgr-0.4.1/lgr/man/LayoutGlue.Rd | 141 lgr-0.4.1/lgr/man/LayoutJson.Rd | 184 - lgr-0.4.1/lgr/man/LogEvent.Rd | 174 - lgr-0.4.1/lgr/man/Logger.Rd | 752 +++- lgr-0.4.1/lgr/man/LoggerGlue.Rd |only lgr-0.4.1/lgr/man/as.data.frame.LogEvent.Rd | 54 lgr-0.4.1/lgr/man/basic_config.Rd | 20 lgr-0.4.1/lgr/man/colorize_levels.Rd | 3 lgr-0.4.1/lgr/man/default_exception_handler.Rd | 2 lgr-0.4.1/lgr/man/event_list.Rd |only lgr-0.4.1/lgr/man/get_logger.Rd | 7 lgr-0.4.1/lgr/man/is_filter.Rd | 16 lgr-0.4.1/lgr/man/label_levels.Rd | 6 lgr-0.4.1/lgr/man/lgr-package.Rd | 6 lgr-0.4.1/lgr/man/logger_config.Rd | 11 lgr-0.4.1/lgr/man/logger_tree.Rd | 2 lgr-0.4.1/lgr/man/print.Appender.Rd | 7 lgr-0.4.1/lgr/man/print.LogEvent.Rd | 53 lgr-0.4.1/lgr/man/print.Logger.Rd | 10 lgr-0.4.1/lgr/man/print.logger_tree.Rd | 3 lgr-0.4.1/lgr/man/read_json_lines.Rd | 6 lgr-0.4.1/lgr/man/simple_logging.Rd | 37 lgr-0.4.1/lgr/man/standardize_threshold.Rd |only lgr-0.4.1/lgr/man/system_infos.Rd | 2 lgr-0.4.1/lgr/man/toString.LogEvent.Rd |only lgr-0.4.1/lgr/man/use_logger.Rd | 6 lgr-0.4.1/lgr/tests/testthat/test_Appender.R | 300 - lgr-0.4.1/lgr/tests/testthat/test_AppenderFileRotating.R | 29 lgr-0.4.1/lgr/tests/testthat/test_Filter.R | 16 lgr-0.4.1/lgr/tests/testthat/test_Filterable.R | 24 lgr-0.4.1/lgr/tests/testthat/test_Layout.R | 17 lgr-0.4.1/lgr/tests/testthat/test_LogEvent.R | 50 lgr-0.4.1/lgr/tests/testthat/test_Logger.R | 104 lgr-0.4.1/lgr/tests/testthat/test_event_list.R |only lgr-0.4.1/lgr/tests/testthat/test_log_levels.R | 19 lgr-0.4.1/lgr/tests/testthat/test_print_Appender.R | 14 lgr-0.4.1/lgr/tests/testthat/test_print_LogEvent.R | 18 lgr-0.4.1/lgr/tests/testthat/test_print_Logger.R | 3 lgr-0.4.1/lgr/tests/testthat/test_simple_logging.R | 16 lgr-0.4.1/lgr/tests/testthat/test_utils.R | 38 lgr-0.4.1/lgr/vignettes/lgr.Rmd | 15 103 files changed, 5247 insertions(+), 5484 deletions(-)
Title: Hidden State Speciation and Extinction
Description: Sets up and executes a HiSSE model (Hidden State Speciation and Extinction) on a phylogeny and character sets to test for hidden shifts in trait dependent rates of diversification. Beaulieu and O'Meara (2016) <doi:10.1093/sysbio/syw022>.
Author: Jeremy Beaulieu [aut, cre],
Brian O'Meara [aut],
Daniel Caetano [aut],
James Boyko [aut]
Maintainer: Jeremy Beaulieu <jmbeauli@uark.edu>
Diff between hisse versions 1.9.8 dated 2020-06-15 and 1.9.9 dated 2020-10-20
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Title: Autocorrelation Function for Functional Time Series
Description: Quantify the serial correlation across lags of a given functional
time series using the autocorrelation function and a partial autocorrelation
function for functional time series proposed in
Mestre et al. (2021) <doi:10.1016/j.csda.2020.107108>.
The autocorrelation functions are based on the L2 norm of the lagged covariance
operators of the series. Functions are available for estimating the
distribution of the autocorrelation functions under the assumption
of strong functional white noise.
Author: Guillermo Mestre Marcos [aut, cre],
José Portela González [aut],
Gregory Rice [aut],
Antonio Muñoz San Roque [ctb],
Estrella Alonso Pérez [ctb]
Maintainer: Guillermo Mestre Marcos <guillermo.mestre@comillas.edu>
Diff between fdaACF versions 0.2.0 dated 2020-08-11 and 1.0.0 dated 2020-10-20
DESCRIPTION | 15 +- MD5 | 20 ++- NAMESPACE | 1 NEWS.md | 8 + R/functional_autocorrelation.R | 212 +++++++++++++++++++++++++++++++++++++++-- R/misc.R | 4 R/plotting_functions.R | 7 - inst |only man/FTS_identification.Rd |only man/fit_ARHp_FPCA.Rd | 2 man/obtain_FACF.Rd | 10 + man/obtain_FPACF.Rd | 10 + 12 files changed, 259 insertions(+), 30 deletions(-)
Title: Adaptive Optimal Two-Stage Designs in R
Description: Optimize one or two-arm, two-stage designs for clinical trials with
respect to several pre-implemented objective criteria or implement custom
objectives.
Optimization under uncertainty and conditional (given stage-one outcome)
constraints are supported.
See Pilz M, Kunzmann K, Herrmann C, Rauch G, Kieser M. A variational
approach to optimal two-stage designs. Statistics in Medicine. 2019;38(21):4159–4171.
<doi:10.1002/sim.8291> for details.
Author: Kevin Kunzmann [aut, cre],
Maximilian Pilz [aut]
Maintainer: Kevin Kunzmann <kevin.kunzmann@mrc-bsu.cam.ac.uk>
Diff between adoptr versions 0.3.2 dated 2020-01-09 and 0.4.1 dated 2020-10-20
adoptr-0.3.2/adoptr/tests/testthat/Rplots.pdf |only adoptr-0.4.1/adoptr/DESCRIPTION | 11 adoptr-0.4.1/adoptr/MD5 | 59 ++-- adoptr-0.4.1/adoptr/NEWS.md | 4 adoptr-0.4.1/adoptr/R/DataDistribution.R | 54 ++- adoptr-0.4.1/adoptr/R/PointMassPrior.R | 2 adoptr-0.4.1/adoptr/R/adoptr.R | 3 adoptr-0.4.1/adoptr/R/constraints.R | 8 adoptr-0.4.1/adoptr/R/minimize.R | 6 adoptr-0.4.1/adoptr/build/vignette.rds |binary adoptr-0.4.1/adoptr/inst/doc/adoptr.R | 30 +- adoptr-0.4.1/adoptr/inst/doc/adoptr.Rmd | 2 adoptr-0.4.1/adoptr/inst/doc/adoptr.html | 138 ++++++++-- adoptr-0.4.1/adoptr/inst/doc/adoptr_jss.R |only adoptr-0.4.1/adoptr/inst/doc/adoptr_jss.Rmd |only adoptr-0.4.1/adoptr/inst/doc/adoptr_jss.html |only adoptr-0.4.1/adoptr/inst/doc/composite-scores.R | 20 - adoptr-0.4.1/adoptr/inst/doc/composite-scores.html | 132 ++++++++- adoptr-0.4.1/adoptr/inst/doc/conditional-scores.R | 20 - adoptr-0.4.1/adoptr/inst/doc/conditional-scores.html | 128 ++++++++- adoptr-0.4.1/adoptr/inst/doc/defining-new-scores.R | 16 - adoptr-0.4.1/adoptr/inst/doc/defining-new-scores.html | 126 ++++++++- adoptr-0.4.1/adoptr/inst/doc/working-with-priors.R | 12 adoptr-0.4.1/adoptr/inst/doc/working-with-priors.html | 124 +++++++- adoptr-0.4.1/adoptr/man/BinomialDataDistribution-class.Rd | 9 adoptr-0.4.1/adoptr/man/adoptr.Rd | 3 adoptr-0.4.1/adoptr/man/get_initial_design.Rd | 3 adoptr-0.4.1/adoptr/tests/testthat/test_BinomialDistribution.R | 91 +++--- adoptr-0.4.1/adoptr/tests/testthat/test_PointMassPrior.R | 4 adoptr-0.4.1/adoptr/tests/testthat/test_constraints.R | 18 + adoptr-0.4.1/adoptr/vignettes/adoptr.Rmd | 2 adoptr-0.4.1/adoptr/vignettes/adoptr_jss.Rmd |only adoptr-0.4.1/adoptr/vignettes/ref.bib |only adoptr-0.4.1/adoptr/vignettes/structure.png |only 34 files changed, 771 insertions(+), 254 deletions(-)
Title: Analysis of Evolutionary Rates in an OU Framework
Description: Estimates rates for continuous character evolution under Brownian motion and a new set of Ornstein-Uhlenbeck based Hansen models that allow both the strength of the pull and stochastic motion to vary across selective regimes. Beaulieu et al (2012) <doi:10.1111/j.1558-5646.2012.01619.x>.
Author: Jeremy M. Beaulieu <jmbeauli@uark.edu>, Brian O'Meara <bomeara@utk.edu>
Maintainer: Jeremy Beaulieu <jmbeauli@uark.edu>
Diff between OUwie versions 2.4 dated 2020-08-04 and 2.5 dated 2020-10-20
DESCRIPTION | 12 - MD5 | 43 +-- NAMESPACE | 1 R/OUwie.R | 467 +++++++++++++++++++++------------------ R/OUwie.anc.R | 2 R/OUwie.boot.R | 13 - R/OUwie.contour.r | 12 - R/OUwie.dredge.R | 104 +++++--- R/OUwie.fixed.R | 283 +++++++++++++++-------- R/check.identify.R | 4 R/vcvbypass.functions.R |only inst/doc/OUwie_2.1_adds.R | 18 + inst/doc/OUwie_2.1_adds.Rmd | 44 ++- inst/doc/OUwie_2.1_adds.pdf |binary man/OUwie.Rd | 50 ++-- man/OUwie.anc.Rd | 2 man/OUwie.boot.Rd | 11 man/OUwie.contour.Rd | 2 man/OUwie.dredge.Rd | 6 man/OUwie.fixed.Rd | 9 tests/testthat/test-likelihood.R | 241 +++++++++++++++++++- vignettes/OUwie_2.1_adds.Rmd | 44 ++- vignettes/OUwie_2.1_adds.html | 130 ++++++++-- 23 files changed, 1016 insertions(+), 482 deletions(-)
Title: Numerical Methods and Optimization in Finance
Description: Functions, examples and data from the first and
the second edition of "Numerical Methods and Optimization
in Finance" by M. Gilli, D. Maringer and E. Schumann
(2019, ISBN:978-0128150658). The package provides
implementations of optimisation heuristics (Differential
Evolution, Genetic Algorithms, Particle Swarm
Optimisation, Simulated Annealing and Threshold
Accepting), and other optimisation tools, such as grid
search and greedy search. There are also functions for
the valuation of financial instruments such as bonds and
options, for portfolio selection and functions that help
with stochastic simulations.
Author: Enrico Schumann [aut, cre] (<https://orcid.org/0000-0001-7601-6576>)
Maintainer: Enrico Schumann <es@enricoschumann.net>
Diff between NMOF versions 2.1-0 dated 2020-04-06 and 2.2-2 dated 2020-10-20
NMOF-2.1-0/NMOF/inst/unitTests/unitTests_portfolio.R |only NMOF-2.2-2/NMOF/DESCRIPTION | 35 ++-- NMOF-2.2-2/NMOF/MD5 | 71 +++++---- NMOF-2.2-2/NMOF/NAMESPACE | 2 NMOF-2.2-2/NMOF/NEWS | 30 +++ NMOF-2.2-2/NMOF/R/TAopt.R | 3 NMOF-2.2-2/NMOF/R/market_data.R | 32 ++-- NMOF-2.2-2/NMOF/R/portfolio.R | 144 ++++++++++++++++++- NMOF-2.2-2/NMOF/build/vignette.rds |binary NMOF-2.2-2/NMOF/inst/CITATION | 2 NMOF-2.2-2/NMOF/inst/doc/An_overview.pdf |binary NMOF-2.2-2/NMOF/inst/doc/DEnss.pdf |binary NMOF-2.2-2/NMOF/inst/doc/LSqueens.pdf |binary NMOF-2.2-2/NMOF/inst/doc/LSselect.pdf |binary NMOF-2.2-2/NMOF/inst/doc/NMOF.bib | 59 ++++--- NMOF-2.2-2/NMOF/inst/doc/PSlms.pdf |binary NMOF-2.2-2/NMOF/inst/doc/TAportfolio.pdf |binary NMOF-2.2-2/NMOF/inst/doc/portfolio.R |only NMOF-2.2-2/NMOF/inst/doc/portfolio.Rnw |only NMOF-2.2-2/NMOF/inst/doc/portfolio.pdf |only NMOF-2.2-2/NMOF/inst/doc/qTableEx.pdf |binary NMOF-2.2-2/NMOF/inst/doc/repair.pdf |binary NMOF-2.2-2/NMOF/inst/doc/vectorise.pdf |binary NMOF-2.2-2/NMOF/inst/tinytest |only NMOF-2.2-2/NMOF/inst/unitTests/test_results.txt | 44 ++--- NMOF-2.2-2/NMOF/inst/unitTests/unitTests_market.R | 10 + NMOF-2.2-2/NMOF/man/DEopt.Rd | 1 NMOF-2.2-2/NMOF/man/GAopt.Rd | 1 NMOF-2.2-2/NMOF/man/PSopt.Rd | 1 NMOF-2.2-2/NMOF/man/TAopt.Rd | 6 NMOF-2.2-2/NMOF/man/bundData.Rd | 4 NMOF-2.2-2/NMOF/man/minCVaR.Rd |only NMOF-2.2-2/NMOF/man/minvar.Rd | 6 NMOF-2.2-2/NMOF/man/mvFrontier.Rd | 13 - NMOF-2.2-2/NMOF/man/optionData.Rd | 4 NMOF-2.2-2/NMOF/man/randomReturns.Rd | 2 NMOF-2.2-2/NMOF/man/showExample.Rd | 12 - NMOF-2.2-2/NMOF/man/trackingPortfolio.Rd |only NMOF-2.2-2/NMOF/tests/tinytest.R |only NMOF-2.2-2/NMOF/vignettes/NMOF.bib | 59 ++++--- NMOF-2.2-2/NMOF/vignettes/portfolio.Rnw |only 41 files changed, 379 insertions(+), 162 deletions(-)
Title: Genome-Wide Discovery of Pre-miRNAs with few Labeled Examples
Description: Machine learning method specifically designed for
pre-miRNA prediction. It takes advantage of unlabeled sequences to improve
the prediction rates even when there are just a few positive examples, when
the negative examples are unreliable or are not good representatives of
its class. Furthermore, the method can automatically search for negative
examples if the user is unable to provide them. MiRNAss can find a good
boundary to divide the pre-miRNAs from other groups of sequences; it
automatically optimizes the threshold that defines the classes boundaries,
and thus, it is robust to high class imbalance. Each step of the method is
scalable and can handle large volumes of data.
Author: Cristian Yones
Maintainer: Cristian Yones <cyones@sinc.unl.edu.ar>
Diff between miRNAss versions 1.4 dated 2018-01-02 and 1.5 dated 2020-10-20
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- README.md | 2 -- build/vignette.rds |binary inst/doc/miRNAss.pdf |binary src/Makevars | 2 +- 6 files changed, 9 insertions(+), 11 deletions(-)
Title: Tidy Anomaly Detection
Description: The 'anomalize' package enables a "tidy" workflow for detecting anomalies in data.
The main functions are time_decompose(), anomalize(), and time_recompose().
When combined, it's quite simple to decompose time series, detect anomalies,
and create bands separating the "normal" data from the anomalous data at scale (i.e. for multiple time series).
Time series decomposition is used to remove trend and seasonal components via the time_decompose() function
and methods include seasonal decomposition of time series by Loess ("stl") and
seasonal decomposition by piecewise medians ("twitter"). The anomalize() function implements
two methods for anomaly detection of residuals including using an inner quartile range ("iqr")
and generalized extreme studentized deviation ("gesd"). These methods are based on
those used in the 'forecast' package and the Twitter 'AnomalyDetection' package.
Refer to the associated functions for specific references for these methods.
Author: Matt Dancho [aut, cre],
Davis Vaughan [aut]
Maintainer: Matt Dancho <mdancho@business-science.io>
Diff between anomalize versions 0.2.1 dated 2020-06-19 and 0.2.2 dated 2020-10-20
DESCRIPTION | 8 - MD5 | 44 ++--- NAMESPACE | 1 NEWS.md | 6 R/anomalize-package.R | 2 R/anomalize.R | 7 R/tidyquant_theme_compat.R | 172 +++++++++++++++++++---- README.md | 4 build/vignette.rds |binary inst/doc/anomalize_methods.html | 91 +++++++++++- inst/doc/anomalize_quick_start_guide.html | 93 ++++++++++++ inst/doc/forecasting_with_cleaned_anomalies.html | 91 +++++++++++- man/anomalize.Rd | 23 ++- man/anomalize_methods.Rd | 4 man/anomalize_package.Rd | 7 man/decompose_methods.Rd | 14 + man/figures/README-tidyverse_anoms_1-1.png |binary man/plot_anomalies.Rd | 17 +- man/plot_anomaly_decomposition.Rd | 14 + man/tidyverse_cran_downloads.Rd | 6 man/time_apply.Rd | 13 + man/time_decompose.Rd | 13 + man/time_frequency.Rd | 4 23 files changed, 530 insertions(+), 104 deletions(-)
Title: Parametric Ordinary Differential Equations Model of Growth,
Death, and Respiration of Macroinvertebrate and Algae Taxa
Description: Numerically solve and plot solutions of a parametric ordinary
differential equations model of growth, death, and respiration of
macroinvertebrate and algae taxa dependent on pre-defined environmental
factors. The model (version 1.0) is introduced in Schuwirth, N. and
Reichert, P., (2013) <DOI:10.1890/12-0591.1>. This package includes
model extensions and the core functions introduced and used in
Schuwirth, N. et al. (2016) <DOI:10.1111/1365-2435.12605>,
Kattwinkel, M. et al. (2016) <DOI:10.1021/acs.est.5b04068>,
Mondy, C. P., and Schuwirth, N. (2017) <DOI:10.1002/eap.1530>,
and Paillex, A. et al. (2017) <DOI:10.1111/fwb.12927>.
Author: Nele Schuwirth, Peter Reichert, Mikolaj Rybinski
Maintainer: Nele Schuwirth <nele.schuwirth@eawag.ch>
Diff between streambugs versions 1.1 dated 2019-09-19 and 1.2 dated 2020-10-20
streambugs-1.1/streambugs/README.md |only streambugs-1.2/streambugs/DESCRIPTION | 18 streambugs-1.2/streambugs/MD5 | 43 streambugs-1.2/streambugs/R/streambugs_aux.r | 1037 ---------- streambugs-1.2/streambugs/R/streambugs_aux_indval_vec.R |only streambugs-1.2/streambugs/R/streambugs_aux_proc.r |only streambugs-1.2/streambugs/man/construct.statevariables.Rd | 9 streambugs-1.2/streambugs/man/foodweb.plot.Rd | 22 streambugs-1.2/streambugs/man/run.streambugs.Rd | 21 streambugs-1.2/streambugs/man/streambugs-package.Rd | 4 streambugs-1.2/streambugs/tests/benchmarks/run_for_toy.R | 6 streambugs-1.2/streambugs/tests/testthat/get_inpind_parval_envcond_habitat-extended_example.rds |only streambugs-1.2/streambugs/tests/testthat/get_inpind_parval_envcond_habitat-minimum_example.json |only streambugs-1.2/streambugs/tests/testthat/get_inpind_parval_envcond_habitat-minimum_example.rds |only streambugs-1.2/streambugs/tests/testthat/get_inpind_parval_envcond_reach-1par-extended_example.rds |only streambugs-1.2/streambugs/tests/testthat/get_inpind_parval_envcond_reach-1par-minimum_example.rds |only streambugs-1.2/streambugs/tests/testthat/get_inpind_parval_envcond_reach-2par-extended_example.rds |only streambugs-1.2/streambugs/tests/testthat/get_inpind_parval_envcond_reach-2par-minimum_example.rds |only streambugs-1.2/streambugs/tests/testthat/get_inpind_parval_initcondinput-Dini-extended_example.rds |only streambugs-1.2/streambugs/tests/testthat/get_inpind_parval_initcondinput-Dini-minimum_example.rds |only streambugs-1.2/streambugs/tests/testthat/get_inpind_parval_initcondinput-Dini_Input_w-extended_example.rds |only streambugs-1.2/streambugs/tests/testthat/get_inpind_parval_initcondinput-Dini_Input_w-minimum_example.rds |only streambugs-1.2/streambugs/tests/testthat/get_inpind_parval_initcondinput-Input-extended_example.rds |only streambugs-1.2/streambugs/tests/testthat/get_inpind_parval_initcondinput-Input-minimum_example.rds |only streambugs-1.2/streambugs/tests/testthat/get_inpind_parval_taxaprop-extended_example.rds |only streambugs-1.2/streambugs/tests/testthat/get_inpind_parval_taxaprop-minimum_example.rds |only streambugs-1.2/streambugs/tests/testthat/get_par_proc_taxon-extended_example.rds |only streambugs-1.2/streambugs/tests/testthat/get_par_proc_taxon-minimum_example.rds |only streambugs-1.2/streambugs/tests/testthat/get_par_proc_web-extended_example.rds |only streambugs-1.2/streambugs/tests/testthat/get_par_proc_web-minimum_example.rds |only streambugs-1.2/streambugs/tests/testthat/helper_test_example.R | 20 streambugs-1.2/streambugs/tests/testthat/test_aux.R |only streambugs-1.2/streambugs/tests/testthat/test_extended_example.R | 6 streambugs-1.2/streambugs/tests/testthat/test_minimum_example.R | 12 34 files changed, 165 insertions(+), 1033 deletions(-)
Title: Derivative-Free Optimization
Description: Derivative-Free optimization algorithms. These algorithms do not require gradient information. More importantly, they can be used to solve non-smooth optimization problems.
Author: Ravi Varadhan[aut, cre], Johns Hopkins University, Hans W. Borchers[aut],
ABB Corporate Research, and Vincent Bechard[aut], HEC Montreal (Montreal University)
Maintainer: Ravi Varadhan <ravi.varadhan@jhu.edu>
Diff between dfoptim versions 2018.2-1 dated 2018-04-02 and 2020.10-1 dated 2020-10-20
DESCRIPTION | 15 ++++------ MD5 | 16 ++++++----- NAMESPACE | 3 +- NEWS | 6 ++++ R/mads.R |only R/nmk.R | 6 ++-- R/nmkb.R | 6 ++-- demo/dfoptim.R | 81 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++ man/mads.Rd |only man/nmkb.Rd | 2 - 10 files changed, 114 insertions(+), 21 deletions(-)
Title: Markov Random Field Models for Image Analysis
Description: Model fitting, sampling and visualization
for the (Hidden) Markov Random Field model with pairwise interactions and
general interaction structure from
Freguglia, Garcia & Bicas (2020) <doi:10.1002/env.2613>,
which has many popular models used in 2-dimensional lattices
as particular cases, like the Ising Model and Potts Model.
Author: Victor Freguglia [aut, cre] (<https://orcid.org/0000-0002-6189-4453>)
Maintainer: Victor Freguglia <victorfreguglia@gmail.com>
Diff between mrf2d versions 0.4.0 dated 2020-06-30 and 0.4.1 dated 2020-10-20
DESCRIPTION | 10 +-- MD5 | 36 +++++------ NAMESPACE | 2 NEWS.md | 4 + R/basis_functions.R | 2 R/mrfi_methods.R | 10 ++- R/pseudo_likelihood.R | 6 - R/rmrf.R | 50 +++++++++++++++ build/partial.rdb |binary build/vignette.rds |binary inst/doc/mrf2d-family.html | 127 +++++++++++++++++++++++++++------------ man/cpmrf2d.Rd | 4 - man/fit_ghm.Rd | 4 - man/mrfi-class.Rd | 5 + man/pl_mrf2d.Rd | 6 - man/rmrf2d.Rd | 9 +- man/rmrf2d_mc.Rd |only man/smr_array.Rd | 4 - tests/testthat/test-mrfi_class.R | 2 tests/testthat/test-rmrf2d_mc.R |only 20 files changed, 204 insertions(+), 77 deletions(-)
Title: Extra Functionality for 'leaflet' Package
Description: Several 'leaflet' plugins are integrated, which are available as extension to the 'leaflet' package.
Author: Gatscha Sebastian [aut, cre]
Maintainer: Gatscha Sebastian <sebastian_gatscha@gmx.at>
Diff between leaflet.extras2 versions 1.0.0 dated 2020-05-18 and 1.1.0 dated 2020-10-20
DESCRIPTION | 10 MD5 | 168 +++++---- NAMESPACE | 17 NEWS.md | 7 R/contextmenu.R |only R/leaflet.extras2-package.R | 2 R/playback.R | 113 +++--- R/timeslider.R |only R/wms.R | 18 inst/examples/contextmenu_app.R |only inst/examples/playback_app.R | 5 inst/examples/timeslider_app.R |only inst/htmlwidgets/lfx-contextmenu |only inst/htmlwidgets/lfx-playback/leaflet.playback-bindings.js | 75 +--- inst/htmlwidgets/lfx-side-by-side/lfx-side-by-side.js | 1 inst/htmlwidgets/lfx-timeslider |only inst/htmlwidgets/lfx-wms/leaflet.wms-bindings.js | 21 - inst/htmlwidgets/lfx-wms/leaflet.wms.js | 11 man/addAntpath.Rd | 242 ++++++------- man/addContextmenu.Rd |only man/addEasyprint.Rd | 76 ++-- man/addGIBS.Rd | 132 +++---- man/addHeightgraph.Rd | 230 ++++++------ man/addHexbin.Rd | 176 ++++----- man/addHistory.Rd | 80 ++-- man/addItemContextmenu.Rd |only man/addMapkeyMarkers.Rd | 202 +++++----- man/addOpenweatherCurrent.Rd | 130 +++--- man/addOpenweatherTiles.Rd | 144 +++---- man/addPlayback.Rd | 209 +++++------ man/addReachability.Rd | 112 +++--- man/addSidebar.Rd | 88 ++-- man/addSidebyside.Rd | 136 +++---- man/addTangram.Rd | 134 +++---- man/addTimeslider.Rd |only man/addVelocity.Rd | 122 +++--- man/addWMS.Rd | 143 +++---- man/antpathOptions.Rd | 126 +++--- man/clearAntpath.Rd | 50 +- man/clearFuture.Rd | 60 +-- man/clearHexbin.Rd | 52 +- man/clearHistory.Rd | 60 +-- man/closeSidebar.Rd | 52 +- man/easyprintMap.Rd | 122 +++--- man/easyprintOptions.Rd | 148 +++---- man/gibs_layers.Rd | 28 - man/goBackHistory.Rd | 62 +-- man/goForwardHistory.Rd | 62 +-- man/heightgraphOptions.Rd | 156 ++++---- man/hexbinOptions.Rd | 134 +++---- man/hideContextmenu.Rd |only man/hideHexbin.Rd | 52 +- man/historyOptions.Rd | 172 ++++----- man/insertItemContextmenu.Rd |only man/leaflet.extras2.Rd | 18 man/makeMapkeyIcon.Rd | 142 +++---- man/mapkeyIconList.Rd | 70 +-- man/mapkeyIcons.Rd | 152 ++++---- man/mapmenuItems.Rd |only man/markermenuItems.Rd |only man/menuItem.Rd |only man/openSidebar.Rd | 56 +-- man/openweatherCurrentOptions.Rd | 70 +-- man/openweatherOptions.Rd | 72 +-- man/playbackOptions.Rd | 132 +++---- man/reachabilityOptions.Rd | 80 ++-- man/removeAntpath.Rd | 54 +- man/removeEasyprint.Rd | 46 +- man/removeItemContextmenu.Rd |only man/removePlayback.Rd | 44 +- man/removeReachability.Rd | 44 +- man/removeSidebar.Rd | 52 +- man/removeSidebyside.Rd | 46 +- man/removeTimeslider.Rd |only man/removeVelocity.Rd | 52 +- man/removeallItemsContextmenu.Rd |only man/setDate.Rd | 56 +-- man/setDisabledContextmenu.Rd |only man/setOptionsVelocity.Rd | 56 +-- man/setTransparent.Rd | 56 +-- man/showContextmenu.Rd |only man/showHexbin.Rd | 52 +- man/sidebar_pane.Rd | 94 ++--- man/sidebar_tabs.Rd | 86 ++-- man/sub-.leaflet_mapkey_icon_set.Rd | 48 +- man/timesliderOptions.Rd |only man/to_jsonformat.Rd |only man/to_ms.Rd | 40 +- man/updateHexbin.Rd | 86 ++-- man/velocityOptions.Rd | 86 ++-- tests/testthat/test-contextmenu.R |only tests/testthat/test-playback.R | 78 +--- tests/testthat/test-timeslider.R |only 93 files changed, 2997 insertions(+), 3011 deletions(-)
More information about leaflet.extras2 at CRAN
Permanent link
Title: Genetic Algorithm for Wind Farm Layout Optimization
Description: The genetic algorithm is designed to optimize wind farms of any shape. It requires a predefined amount of turbines, a unified rotor radius and an average wind speed value for each incoming wind direction. A terrain effect model can be included that downloads an 'SRTM' elevation model and loads a Corine Land Cover raster to approximate surface roughness.
Author: Sebastian Gatscha [aut, cre]
Maintainer: Sebastian Gatscha <sebastian_gatscha@gmx.at>
Diff between windfarmGA versions 2.2.3 dated 2019-12-16 and 2.3.0 dated 2020-10-20
windfarmGA-2.2.3/windfarmGA/R/make_clc_legend.R |only windfarmGA-2.3.0/windfarmGA/DESCRIPTION | 12 windfarmGA-2.3.0/windfarmGA/MD5 | 193 ++--- windfarmGA-2.3.0/windfarmGA/NAMESPACE | 2 windfarmGA-2.3.0/windfarmGA/NEWS.md | 8 windfarmGA-2.3.0/windfarmGA/R/calculate_energy.R | 5 windfarmGA-2.3.0/windfarmGA/R/fitness.R | 3 windfarmGA-2.3.0/windfarmGA/R/genetic_algorithm.R | 34 - windfarmGA-2.3.0/windfarmGA/R/get_dist_angles.R | 3 windfarmGA-2.3.0/windfarmGA/R/get_grids.R | 7 windfarmGA-2.3.0/windfarmGA/R/grid_area.R | 16 windfarmGA-2.3.0/windfarmGA/R/hexa_area.R | 13 windfarmGA-2.3.0/windfarmGA/R/init_population.R | 3 windfarmGA-2.3.0/windfarmGA/R/plot_fitness_evolution.R | 2 windfarmGA-2.3.0/windfarmGA/R/plot_leaflet.R | 52 + windfarmGA-2.3.0/windfarmGA/R/plot_result.R | 59 + windfarmGA-2.3.0/windfarmGA/R/random_search.R | 2 windfarmGA-2.3.0/windfarmGA/R/random_search_single.R | 2 windfarmGA-2.3.0/windfarmGA/R/readInteger.R | 4 windfarmGA-2.3.0/windfarmGA/R/selection.R | 9 windfarmGA-2.3.0/windfarmGA/R/trimton.R | 9 windfarmGA-2.3.0/windfarmGA/R/turbine_influences.R | 3 windfarmGA-2.3.0/windfarmGA/R/visibility.R | 46 - windfarmGA-2.3.0/windfarmGA/R/windfarmGA.R | 28 windfarmGA-2.3.0/windfarmGA/R/windfarmGA_package.R | 4 windfarmGA-2.3.0/windfarmGA/inst/extdata/polygon.rda |binary windfarmGA-2.3.0/windfarmGA/man/BaroHoehe.Rd | 44 - windfarmGA-2.3.0/windfarmGA/man/GridFilter.Rd | 48 - windfarmGA-2.3.0/windfarmGA/man/InfluPoints.Rd | 58 - windfarmGA-2.3.0/windfarmGA/man/PlotWindfarmGA.Rd | 94 +- windfarmGA-2.3.0/windfarmGA/man/RandomSearch.Rd | 68 +- windfarmGA-2.3.0/windfarmGA/man/RandomSearchPlot.Rd | 48 - windfarmGA-2.3.0/windfarmGA/man/RandomSearchTurb.Rd | 62 - windfarmGA-2.3.0/windfarmGA/man/StartGA.Rd | 44 - windfarmGA-2.3.0/windfarmGA/man/VekWinkelCalc.Rd | 58 - windfarmGA-2.3.0/windfarmGA/man/barometric_height.Rd | 77 +- windfarmGA-2.3.0/windfarmGA/man/big_shape.Rd | 4 windfarmGA-2.3.0/windfarmGA/man/calculateEn.Rd | 130 ++- windfarmGA-2.3.0/windfarmGA/man/calculate_energy.Rd | 278 ++++---- windfarmGA-2.3.0/windfarmGA/man/cansee.Rd | 73 +- windfarmGA-2.3.0/windfarmGA/man/crossover.Rd | 129 ++- windfarmGA-2.3.0/windfarmGA/man/crossover1.Rd | 54 - windfarmGA-2.3.0/windfarmGA/man/dup_coords.Rd | 92 +- windfarmGA-2.3.0/windfarmGA/man/fitness.Rd | 215 +++--- windfarmGA-2.3.0/windfarmGA/man/genAlgo.Rd | 248 ++++--- windfarmGA-2.3.0/windfarmGA/man/genetic_algorithm.Rd | 459 +++++++------- windfarmGA-2.3.0/windfarmGA/man/getDEM.Rd | 101 +-- windfarmGA-2.3.0/windfarmGA/man/getISO3.Rd | 116 +-- windfarmGA-2.3.0/windfarmGA/man/get_dist_angles.Rd | 130 +-- windfarmGA-2.3.0/windfarmGA/man/get_grids.Rd | 179 ++--- windfarmGA-2.3.0/windfarmGA/man/grid_area.Rd | 180 ++--- windfarmGA-2.3.0/windfarmGA/man/heatmapGA.Rd | 44 - windfarmGA-2.3.0/windfarmGA/man/hexa_area.Rd | 103 +-- windfarmGA-2.3.0/windfarmGA/man/hole_shape.Rd | 4 windfarmGA-2.3.0/windfarmGA/man/init_population.Rd | 107 +-- windfarmGA-2.3.0/windfarmGA/man/interpol_view.Rd | 180 ++--- windfarmGA-2.3.0/windfarmGA/man/isSpatial.Rd | 114 +-- windfarmGA-2.3.0/windfarmGA/man/leafPlot.Rd | 54 - windfarmGA-2.3.0/windfarmGA/man/multi_shape.Rd | 4 windfarmGA-2.3.0/windfarmGA/man/mutation.Rd | 100 +-- windfarmGA-2.3.0/windfarmGA/man/permutations.Rd | 90 +- windfarmGA-2.3.0/windfarmGA/man/plotEvolution.Rd | 46 - windfarmGA-2.3.0/windfarmGA/man/plotResult.Rd | 111 +-- windfarmGA-2.3.0/windfarmGA/man/plotWindrose.Rd | 80 +- windfarmGA-2.3.0/windfarmGA/man/plot_cloud.Rd | 90 +- windfarmGA-2.3.0/windfarmGA/man/plot_development.Rd | 69 +- windfarmGA-2.3.0/windfarmGA/man/plot_evolution.Rd | 89 +- windfarmGA-2.3.0/windfarmGA/man/plot_fitness_evolution.Rd | 82 +- windfarmGA-2.3.0/windfarmGA/man/plot_heatmap.Rd | 107 +-- windfarmGA-2.3.0/windfarmGA/man/plot_leaflet.Rd | 106 +-- windfarmGA-2.3.0/windfarmGA/man/plot_parkfitness.Rd | 83 +- windfarmGA-2.3.0/windfarmGA/man/plot_random_search.Rd | 75 +- windfarmGA-2.3.0/windfarmGA/man/plot_result.Rd | 183 ++--- windfarmGA-2.3.0/windfarmGA/man/plot_viewshed.Rd | 121 +-- windfarmGA-2.3.0/windfarmGA/man/plot_windfarmGA.Rd | 151 ++-- windfarmGA-2.3.0/windfarmGA/man/plot_windrose.Rd | 131 ++- windfarmGA-2.3.0/windfarmGA/man/plotfitnessevolution.Rd | 40 - windfarmGA-2.3.0/windfarmGA/man/plotparkfitness.Rd | 40 - windfarmGA-2.3.0/windfarmGA/man/random_search.Rd | 102 +-- windfarmGA-2.3.0/windfarmGA/man/random_search_single.Rd | 103 +-- windfarmGA-2.3.0/windfarmGA/man/rasterprofile.Rd | 69 +- windfarmGA-2.3.0/windfarmGA/man/readinteger.Rd | 74 +- windfarmGA-2.3.0/windfarmGA/man/readintegerSel.Rd | 72 +- windfarmGA-2.3.0/windfarmGA/man/resultrect.Rd | 34 - windfarmGA-2.3.0/windfarmGA/man/selection.Rd | 163 ++-- windfarmGA-2.3.0/windfarmGA/man/selection1.Rd | 62 - windfarmGA-2.3.0/windfarmGA/man/sp_polygon.Rd | 4 windfarmGA-2.3.0/windfarmGA/man/splitAt.Rd | 80 +- windfarmGA-2.3.0/windfarmGA/man/tess2SPdf.Rd | 60 + windfarmGA-2.3.0/windfarmGA/man/trimton.Rd | 199 +++--- windfarmGA-2.3.0/windfarmGA/man/turbine_influences.Rd | 120 +-- windfarmGA-2.3.0/windfarmGA/man/viewTo.Rd | 73 +- windfarmGA-2.3.0/windfarmGA/man/viewshed.Rd | 100 +-- windfarmGA-2.3.0/windfarmGA/man/windata_format.Rd | 102 +-- windfarmGA-2.3.0/windfarmGA/man/windfarmGA.Rd | 334 +++++----- windfarmGA-2.3.0/windfarmGA/man/windfarmGA_.Rd | 61 - windfarmGA-2.3.0/windfarmGA/tests/testthat/test_plots.R | 4 windfarmGA-2.3.0/windfarmGA/tests/testthat/test_utils.R | 12 98 files changed, 4078 insertions(+), 3662 deletions(-)
Title: Log Rotation and Conditional Backups
Description: Conditionally rotate or back-up files based on
their size or the date of the last backup; inspired by the 'Linux'
utility 'logrotate'.
Author: Stefan Fleck [aut, cre] (<https://orcid.org/0000-0003-3344-9851>)
Maintainer: Stefan Fleck <stefan.b.fleck@gmail.com>
Diff between rotor versions 0.3.1 dated 2020-10-18 and 0.3.2 dated 2020-10-20
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/Cache.R | 3 ++- tests/testthat/test_Cache.R | 32 +++++++++++++++++++++----------- 4 files changed, 29 insertions(+), 18 deletions(-)
Title: Empirical Dynamic Modeling ('EDM')
Description: An implementation of 'EDM' algorithms based on research software developed for internal use at the Sugihara Lab ('UCSD/SIO'). The package is implemented with 'Rcpp' wrappers around the 'cppEDM' library. It implements the 'simplex' projection method from Sugihara & May (1990) <doi:10.1038/344734a0>, the 'S-map' algorithm from Sugihara (1994) <doi:10.1098/rsta.1994.0106>, convergent cross mapping described in Sugihara et al. (2012) <doi:10.1126/science.1227079>, and, 'multiview embedding' described in Ye & Sugihara (2016) <doi:10.1126/science.aag0863>.
Author: Joseph Park [aut, cre] (<https://orcid.org/0000-0001-5411-1409>),
Cameron Smith [aut],
George Sugihara [aut, ccp] (<https://orcid.org/0000-0002-2863-6946>),
Ethan Deyle [aut] (<https://orcid.org/0000-0001-8704-8434>),
Erik Saberski [ctb] (<https://orcid.org/0000-0002-6475-6187>),
Hao Ye [ctb] (<https://orcid.org/0000-0002-8630-1458>),
The Regents of the University of California [cph]
Maintainer: Joseph Park <JosephPark@IEEE.org>
Diff between rEDM versions 1.5.0 dated 2020-07-06 and 1.6.1 dated 2020-10-20
DESCRIPTION | 24 MD5 | 50 - NEWS | 8 R/EDM.R | 104 +- R/EDM_AuxFuncs.R | 5 R/LegacyInterface.R | 39 man/CCM.Rd | 6 man/SMap.Rd | 39 src/CCM.cpp | 17 src/Embed.cpp | 16 src/EmbedDim.cpp | 10 src/Multiview.cpp | 10 src/PredictInterval.cpp | 10 src/PredictNL.cpp | 10 src/RcppEDMCommon.cpp | 55 - src/RcppEDMCommon.h | 3 src/SMap.cpp | 10 src/Simplex.cpp | 10 src/cppEDM/src/API.cc | 93 +- src/cppEDM/src/API.h | 66 - src/cppEDM/src/EDM_Formatting.cc | 18 src/cppEDM/src/EDM_Neighbors.cc | 38 src/cppEDM/src/Parameter.cc | 8 src/cppEDM/src/SMap.cc | 33 src/cppEDM/src/makefile | 10 vignettes/rEDM-tutorial.html | 1623 +++++++++++++++++++-------------------- 26 files changed, 1200 insertions(+), 1115 deletions(-)
Title: Quantile Regression Index Score
Description: The QRI_func() function performs quantile regression analysis using age and sex as predictors to calculate the Quantile Regression Index (QRI) score for each individual’s regional brain imaging metrics and then averages across the regional scores to generate an average tissue specific score for each subject. The QRI_plot() is used to plot QRI and generate the normative curves for individual measurements.
Author: Peter Kochunov [aut],
Si Gao [aut, cre],
Meghann Ryan [aut]
Maintainer: Si Gao <sgao@som.umaryland.edu>
Diff between QRIpkg versions 0.2.0 dated 2020-09-20 and 0.2.1 dated 2020-10-20
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/QRI_func.R | 21 ++++++++++++++------- man/QRI_func.Rd | 14 ++++++++------ 4 files changed, 28 insertions(+), 19 deletions(-)
Title: Estimate Real-Time Case Counts and Time-Varying Epidemiological
Parameters
Description: Estimates the time-varying reproduction number, rate of spread,
and doubling time using a range of open-source tools (Abbott et al. (2020) <doi:10.12688/wellcomeopenres.16006.1>),
and current best practices (Gostic et al. (2020) <doi:10.1101/2020.06.18.20134858>).
It aims to help users avoid some of the limitations of naive implementations in a framework
that is informed by community feedback and is under active development.
Author: Sam Abbott [aut, cre] (<https://orcid.org/0000-0001-8057-8037>),
Joel Hellewell [aut] (<https://orcid.org/0000-0003-2683-0849>),
Robin Thompson [aut],
Katelyn Gostic [aut],
Katharine Sherratt [aut],
Sophie Meakin [aut],
James Munday [aut],
Nikos Bosse [aut],
Joe Hickson [aut],
Paul Mee [ctb],
Peter Ellis [ctb],
Hamada S. Badr [ctb] (<https://orcid.org/0000-0002-9808-2344>),
Michael DeWitt [ctb] (<https://orcid.org/0000-0001-8940-1967>),
EpiForecasts [aut],
Sebastian Funk [aut]
Maintainer: Sam Abbott <sam.abbott@lshtm.ac.uk>
Diff between EpiNow2 versions 1.1.0 dated 2020-09-01 and 1.2.1 dated 2020-10-20
EpiNow2-1.1.0/EpiNow2/data/covid_generation_times.rda |only EpiNow2-1.1.0/EpiNow2/data/covid_incubation_period.rda |only EpiNow2-1.1.0/EpiNow2/data/covid_serial_intervals.rda |only EpiNow2-1.1.0/EpiNow2/man/covid_generation_times.Rd |only EpiNow2-1.1.0/EpiNow2/man/covid_incubation_period.Rd |only EpiNow2-1.1.0/EpiNow2/man/covid_serial_intervals.Rd |only EpiNow2-1.2.1/EpiNow2/DESCRIPTION | 31 EpiNow2-1.2.1/EpiNow2/MD5 | 212 +- EpiNow2-1.2.1/EpiNow2/NAMESPACE | 51 EpiNow2-1.2.1/EpiNow2/NEWS.md | 43 EpiNow2-1.2.1/EpiNow2/R/adjust.R | 42 EpiNow2-1.2.1/EpiNow2/R/create.R |only EpiNow2-1.2.1/EpiNow2/R/data.R | 23 EpiNow2-1.2.1/EpiNow2/R/dist.R | 160 - EpiNow2-1.2.1/EpiNow2/R/epinow-internal.R |only EpiNow2-1.2.1/EpiNow2/R/epinow.R | 623 ++---- EpiNow2-1.2.1/EpiNow2/R/estimate_infections.R | 909 ++++------ EpiNow2-1.2.1/EpiNow2/R/extract.R |only EpiNow2-1.2.1/EpiNow2/R/forecast_infections.R | 119 - EpiNow2-1.2.1/EpiNow2/R/get.R | 221 +- EpiNow2-1.2.1/EpiNow2/R/map.R | 57 EpiNow2-1.2.1/EpiNow2/R/plot.R | 157 - EpiNow2-1.2.1/EpiNow2/R/regional_epinow.R |only EpiNow2-1.2.1/EpiNow2/R/report.R | 221 -- EpiNow2-1.2.1/EpiNow2/R/setup.R |only EpiNow2-1.2.1/EpiNow2/R/simulate.R | 87 EpiNow2-1.2.1/EpiNow2/R/stanmodels.R | 3 EpiNow2-1.2.1/EpiNow2/R/summarise.R | 619 +++--- EpiNow2-1.2.1/EpiNow2/R/utilities.R | 151 + EpiNow2-1.2.1/EpiNow2/README.md | 382 +--- EpiNow2-1.2.1/EpiNow2/data/generation_times.rda |only EpiNow2-1.2.1/EpiNow2/data/incubation_periods.rda |only EpiNow2-1.2.1/EpiNow2/inst/CITATION |only EpiNow2-1.2.1/EpiNow2/inst/WORDLIST | 39 EpiNow2-1.2.1/EpiNow2/inst/stan/estimate_infections.stan | 71 EpiNow2-1.2.1/EpiNow2/inst/stan/functions/approximate_gp_functions.stan | 3 EpiNow2-1.2.1/EpiNow2/inst/stan/functions/convolve.stan | 3 EpiNow2-1.2.1/EpiNow2/inst/stan/functions/discretised_gamma_pmf.stan | 9 EpiNow2-1.2.1/EpiNow2/inst/stan/functions/discretised_lognormal_pmf.stan | 12 EpiNow2-1.2.1/EpiNow2/inst/stan/tune_inv_gamma.stan |only EpiNow2-1.2.1/EpiNow2/inst/templates/_all-region-summary.Rmd | 6 EpiNow2-1.2.1/EpiNow2/inst/templates/_region-report.Rmd | 2 EpiNow2-1.2.1/EpiNow2/inst/templates/_regional-summary.Rmd | 12 EpiNow2-1.2.1/EpiNow2/man/R_to_growth.Rd | 1 EpiNow2-1.2.1/EpiNow2/man/adjust_infection_to_report.Rd | 33 EpiNow2-1.2.1/EpiNow2/man/allocate_delays.Rd |only EpiNow2-1.2.1/EpiNow2/man/bootstrapped_dist_fit.Rd | 9 EpiNow2-1.2.1/EpiNow2/man/calc_CrI.Rd |only EpiNow2-1.2.1/EpiNow2/man/calc_CrIs.Rd |only EpiNow2-1.2.1/EpiNow2/man/calc_summary_measures.Rd |only EpiNow2-1.2.1/EpiNow2/man/calc_summary_stats.Rd |only EpiNow2-1.2.1/EpiNow2/man/clean_nowcasts.Rd | 5 EpiNow2-1.2.1/EpiNow2/man/clean_regions.Rd |only EpiNow2-1.2.1/EpiNow2/man/construct_output.Rd |only EpiNow2-1.2.1/EpiNow2/man/copy_results_to_latest.Rd |only EpiNow2-1.2.1/EpiNow2/man/country_map.Rd | 9 EpiNow2-1.2.1/EpiNow2/man/create_clean_reported_cases.Rd |only EpiNow2-1.2.1/EpiNow2/man/create_future_rt.Rd |only EpiNow2-1.2.1/EpiNow2/man/create_initial_conditions.Rd |only EpiNow2-1.2.1/EpiNow2/man/create_shifted_cases.Rd |only EpiNow2-1.2.1/EpiNow2/man/create_stan_args.Rd |only EpiNow2-1.2.1/EpiNow2/man/create_stan_data.Rd |only EpiNow2-1.2.1/EpiNow2/man/dist_fit.Rd | 7 EpiNow2-1.2.1/EpiNow2/man/dist_skel.Rd | 19 EpiNow2-1.2.1/EpiNow2/man/epinow.Rd | 197 -- EpiNow2-1.2.1/EpiNow2/man/estimate_infections.Rd | 386 +--- EpiNow2-1.2.1/EpiNow2/man/estimates_by_report_date.Rd |only EpiNow2-1.2.1/EpiNow2/man/extract_CrIs.Rd |only EpiNow2-1.2.1/EpiNow2/man/extract_parameter.Rd |only EpiNow2-1.2.1/EpiNow2/man/extract_parameter_samples.Rd |only EpiNow2-1.2.1/EpiNow2/man/extract_static_parameter.Rd |only EpiNow2-1.2.1/EpiNow2/man/figures/unnamed-chunk-12-1.png |binary EpiNow2-1.2.1/EpiNow2/man/figures/unnamed-chunk-13-1.png |only EpiNow2-1.2.1/EpiNow2/man/figures/unnamed-chunk-14-1.png |only EpiNow2-1.2.1/EpiNow2/man/figures/unnamed-chunk-16-1.png |binary EpiNow2-1.2.1/EpiNow2/man/figures/unnamed-chunk-17-1.png |only EpiNow2-1.2.1/EpiNow2/man/figures/unnamed-chunk-18-1.png |only EpiNow2-1.2.1/EpiNow2/man/fit_model_with_nuts.Rd |only EpiNow2-1.2.1/EpiNow2/man/fit_model_with_vb.Rd |only EpiNow2-1.2.1/EpiNow2/man/forecast_infections.Rd | 44 EpiNow2-1.2.1/EpiNow2/man/format_fit.Rd |only EpiNow2-1.2.1/EpiNow2/man/gamma_dist_def.Rd | 9 EpiNow2-1.2.1/EpiNow2/man/generation_times.Rd |only EpiNow2-1.2.1/EpiNow2/man/get_dist.Rd |only EpiNow2-1.2.1/EpiNow2/man/get_generation_time.Rd |only EpiNow2-1.2.1/EpiNow2/man/get_incubation_period.Rd |only EpiNow2-1.2.1/EpiNow2/man/get_regional_results.Rd | 58 EpiNow2-1.2.1/EpiNow2/man/get_regions_with_most_reports.Rd |only EpiNow2-1.2.1/EpiNow2/man/global_map.Rd | 2 EpiNow2-1.2.1/EpiNow2/man/growth_to_R.Rd | 1 EpiNow2-1.2.1/EpiNow2/man/incubation_periods.Rd |only EpiNow2-1.2.1/EpiNow2/man/lognorm_dist_def.Rd | 6 EpiNow2-1.2.1/EpiNow2/man/make_conf.Rd | 13 EpiNow2-1.2.1/EpiNow2/man/map_prob_change.Rd | 2 EpiNow2-1.2.1/EpiNow2/man/match_output_arguments.Rd |only EpiNow2-1.2.1/EpiNow2/man/plot_estimates.Rd | 42 EpiNow2-1.2.1/EpiNow2/man/plot_summary.Rd | 2 EpiNow2-1.2.1/EpiNow2/man/process_region.Rd |only EpiNow2-1.2.1/EpiNow2/man/process_regions.Rd |only EpiNow2-1.2.1/EpiNow2/man/regional_epinow.Rd | 93 - EpiNow2-1.2.1/EpiNow2/man/regional_runtimes.Rd |only EpiNow2-1.2.1/EpiNow2/man/regional_summary.Rd | 63 EpiNow2-1.2.1/EpiNow2/man/report_cases.Rd | 49 EpiNow2-1.2.1/EpiNow2/man/report_plots.Rd | 43 EpiNow2-1.2.1/EpiNow2/man/report_summary.Rd | 4 EpiNow2-1.2.1/EpiNow2/man/run_region.Rd |only EpiNow2-1.2.1/EpiNow2/man/sample_approx_dist.Rd | 16 EpiNow2-1.2.1/EpiNow2/man/save_estimate_infections.Rd |only EpiNow2-1.2.1/EpiNow2/man/save_forecast_infections.Rd |only EpiNow2-1.2.1/EpiNow2/man/save_input.Rd |only EpiNow2-1.2.1/EpiNow2/man/setup_default_logging.Rd |only EpiNow2-1.2.1/EpiNow2/man/setup_dt.Rd |only EpiNow2-1.2.1/EpiNow2/man/setup_future.Rd |only EpiNow2-1.2.1/EpiNow2/man/setup_logging.Rd |only EpiNow2-1.2.1/EpiNow2/man/setup_target_folder.Rd |only EpiNow2-1.2.1/EpiNow2/man/simulate_cases.Rd | 72 EpiNow2-1.2.1/EpiNow2/man/stop_timeout.Rd |only EpiNow2-1.2.1/EpiNow2/man/summarise_key_measures.Rd | 8 EpiNow2-1.2.1/EpiNow2/man/summarise_results.Rd | 6 EpiNow2-1.2.1/EpiNow2/man/tune_inv_gamma.Rd |only EpiNow2-1.2.1/EpiNow2/man/update_horizon.Rd |only EpiNow2-1.2.1/EpiNow2/src/Makevars | 10 EpiNow2-1.2.1/EpiNow2/src/Makevars.win | 10 EpiNow2-1.2.1/EpiNow2/src/RcppExports.cpp | 2 EpiNow2-1.2.1/EpiNow2/src/stanExports_estimate_infections.h | 685 +++---- EpiNow2-1.2.1/EpiNow2/src/stanExports_tune_inv_gamma.cc |only EpiNow2-1.2.1/EpiNow2/src/stanExports_tune_inv_gamma.h |only EpiNow2-1.2.1/EpiNow2/tests/testthat |only EpiNow2-1.2.1/EpiNow2/tests/testthat.R |only 129 files changed, 2827 insertions(+), 3347 deletions(-)
Title: Bootstrapping Estimates of Clustering Stability
Description: Implementation of the bootstrapping approach for the estimation of clustering stability and its application in estimating the number of clusters, as introduced by Yu et al<doi:10.1142/9789814749411_0007>. Implementation of the non-parametric bootstrap approach to assessing the stability of module detection in a graph, the extension for the selection of a parameter set that defines a graph from data in a way that optimizes stability and the corresponding visualization functions, as introduced by Tian et al.
Author: Han Yu, Mingmei Tian
Maintainer: Mingmei Tian <mingmeit@buffalo.edu>
Diff between bootcluster versions 0.1.0 dated 2017-11-13 and 0.2.0 dated 2020-10-20
DESCRIPTION | 17 + MD5 | 28 ++- NAMESPACE | 28 +++ R/data_wine.R | 38 ++-- R/helpers.R | 347 +++++++++++++++++++++++++++++++++++++--- R/kselect.R | 5 R/myoverallscheme.R |only R/networkstability.R |only R/plotcode.R |only R/scheme2.R | 132 +++++++-------- R/stability.R | 5 R/thresholdselect.R |only README.md |only man/k.select.Rd | 109 ++++++------ man/network.stability.Rd |only man/network.stability.output.Rd |only man/stability.Rd | 100 +++++------ man/threshold.select.Rd |only man/wine.Rd | 40 ++-- 19 files changed, 598 insertions(+), 251 deletions(-)
Title: Estimating Aboveground Biomass and Its Uncertainty in Tropical
Forests
Description: Contains functions to estimate aboveground biomass/carbon and its uncertainty in tropical forests.
These functions allow to (1) retrieve and to correct taxonomy, (2) estimate wood density and its uncertainty,
(3) construct height-diameter models, (4) manage tree and plot coordinates,
(5) estimate the aboveground biomass/carbon at the stand level with associated uncertainty.
To cite BIOMASS, please use citation("BIOMASS").
See more in the article of Réjou-Méchain et al. (2017) <doi:10.1111/2041-210X.12753>.
Author: Maxime Réjou-Méchain [aut, cre, dtc],
Arthur Pere [aut],
Guillaume Cornu [aut] (<https://orcid.org/0000-0002-7523-5176>),
Ariane Tanguy [aut],
Camille Piponiot [aut],
Jerome Chave [dtc],
Bruno Hérault [aut],
Ted Feldpausch [dtc],
Philippe Verley [ctb]
Maintainer: Maxime Réjou-Méchain <maxime.rejou@gmail.com>
Diff between BIOMASS versions 2.1.3 dated 2020-06-25 and 2.1.4 dated 2020-10-20
DESCRIPTION | 17 MD5 | 96 +-- NEWS | 64 +- R/AGBmonteCarlo.R | 18 R/attributeTree.R | 16 R/computeAGB.R | 14 R/correctCoordGPS.R | 14 R/correctTaxo.R | 166 ++---- R/cutPlot.R | 12 R/data_documentation.R | 2 R/getBioclimParam.R | 6 R/getWoodDensity.R | 26 R/latlong2UTM.R | 2 R/numberCorner.R | 14 R/retrieveH.R | 13 R/summaryByPlot.R | 8 README.md | 37 - build/vignette.rds |binary inst/doc/BIOMASS.R | 6 inst/doc/BIOMASS.Rmd | 10 inst/doc/BIOMASS.html | 848 +++++++++++++------------------ inst/doc/plot.html | 800 ++++++++++++++--------------- man/AGBmonteCarlo.Rd | 21 man/BIOMASS-package.Rd | 6 man/KarnatakaForest.Rd | 6 man/NouraguesHD.Rd | 6 man/apgFamilies.Rd | 6 man/attributeTree.Rd | 2 man/cacheManager.Rd | 8 man/computeAGB.Rd | 2 man/computeE.Rd | 8 man/correctCoordGPS.Rd | 26 man/correctTaxo.Rd | 32 - man/cutPlot.Rd | 9 man/feldCoef.Rd | 6 man/genusFamily.Rd | 6 man/getBioclimParam.Rd | 10 man/getWoodDensity.Rd | 17 man/latlong2UTM.Rd | 2 man/modelHD.Rd | 3 man/numberCorner.Rd | 4 man/param_4.Rd | 6 man/param_7.Rd | 6 man/retrieveH.Rd | 8 man/sd_10.Rd | 6 man/summaryByPlot.Rd | 4 man/wdData.Rd | 8 tests/testthat/test_01_correctCoordGPS.R | 4 vignettes/BIOMASS.Rmd | 10 49 files changed, 1167 insertions(+), 1254 deletions(-)
Title: Khmaladze Martingale Transformation Goodness-of-Fit Test
Description: Consider a goodness-of-fit (GOF) problem of testing whether a random sample comes from one sample location-scale model where location and scale parameters are unknown. It is well known that Khmaladze martingale transformation method - which was proposed by Khmaladze (1981) <DOI:10.1137/1126027> - provides asymptotic distribution free test for the GOF problem. This package contains one function: KhmaladzeTrans(). In this version, KhmaladzeTrans() provides test statistic and critical value of GOF test for normal, Cauchy, and logistic distributions. This package used the main algorithm proposed by Kim (2020) <DOI:10.1007/s00180-020-00971-7> and tests for other distributions will be available at the later version.
Author: Jiwoong Kim <jwboys26 at gmail.com>
Maintainer: Jiwoong Kim <jwboys26@gmail.com>
Diff between GofKmt versions 2.1.1 dated 2020-02-21 and 2.2.0 dated 2020-10-20
GofKmt-2.1.1/GofKmt/data/Integration_Tables.rda |only GofKmt-2.1.1/GofKmt/man/Integration_Tables.Rd |only GofKmt-2.2.0/GofKmt/DESCRIPTION | 12 GofKmt-2.2.0/GofKmt/MD5 | 31 + GofKmt-2.2.0/GofKmt/NAMESPACE | 1 GofKmt-2.2.0/GofKmt/R/KmtFunc.R | 158 ++++++++- GofKmt-2.2.0/GofKmt/R/RcppExports.R | 4 GofKmt-2.2.0/GofKmt/R/sysdata.rda |binary GofKmt-2.2.0/GofKmt/R/tbl_data.R | 28 + GofKmt-2.2.0/GofKmt/data/Tables.rda |only GofKmt-2.2.0/GofKmt/man/GetCV.Rd |only GofKmt-2.2.0/GofKmt/man/KhmaladzeTrans.Rd | 65 +++- GofKmt-2.2.0/GofKmt/man/Tables.Rd |only GofKmt-2.2.0/GofKmt/src/Cauchy.h | 10 GofKmt-2.2.0/GofKmt/src/Kmt.h | 381 ++++++++++++++++++++++-- GofKmt-2.2.0/GofKmt/src/KmtMain.cpp | 44 ++ GofKmt-2.2.0/GofKmt/src/Logistic.h | 64 +++- GofKmt-2.2.0/GofKmt/src/Normal.h | 35 +- GofKmt-2.2.0/GofKmt/src/RcppExports.cpp | 9 19 files changed, 705 insertions(+), 137 deletions(-)
Title: The Integration Between 'IBM COGNOS TM1' and R
Description: Useful functions to connect to 'TM1' <https://www.ibm.com/uk-en/products/planning-and-analytics> instance from R via REST API. With the functions in the package, data can be imported from 'TM1' via mdx view or native view, data can be sent to 'TM1', processes and chores can be executed, and cube and dimension metadata information can be taken.
Author: Muhammed Ali Onder
Maintainer: Muhammed Ali Onder <muhammedalionder@gmail.com>
Diff between tm1r versions 1.1.4 dated 2020-03-19 and 1.1.5 dated 2020-10-20
DESCRIPTION | 12 - MD5 | 62 +++---- R/tm1_api_request.R | 3 R/tm1_connection.R | 19 +- R/tm1_create_element.R | 18 -- R/tm1_create_subset.R | 17 -- R/tm1_create_view.R | 11 - R/tm1_delete_element.R | 17 -- R/tm1_delete_subset.R | 11 - R/tm1_delete_view.R | 11 - R/tm1_get_config.R | 15 - R/tm1_get_cube_dimensions.R | 12 - R/tm1_get_cubes.R | 12 - R/tm1_get_data.R | 12 - R/tm1_get_dimension_attributes.R | 11 - R/tm1_get_dimension_elements.R | 11 - R/tm1_get_dimension_subsets.R | 11 - R/tm1_get_dimensions.R | 12 - R/tm1_get_element.R | 172 +++++++++----------- R/tm1_get_instances.R | 6 R/tm1_get_log.R | 11 - R/tm1_get_mdx_view.R | 11 - R/tm1_get_native_view.R | 221 ++++++++++++-------------- R/tm1_get_subset_elements.R | 11 - R/tm1_logout.R | 11 - R/tm1_run_chore.R | 11 - R/tm1_run_process.R | 11 - R/tm1_send_data.R | 11 - R/tm1_send_dataset.R | 329 ++++++++++++++++++++------------------- README.md | 38 ++-- man/tm1_get_instances.Rd | 3 man/tm1_send_dataset.Rd | 5 32 files changed, 464 insertions(+), 664 deletions(-)
Title: SNP-Set (Sequence) Kernel Association Test
Description: Functions for kernel-regression-based association tests including Burden test, SKAT and SKAT-O. These methods aggregate individual SNP score statistics in a SNP set and efficiently compute SNP-set level p-values.
Author: Seunggeun (Shawn) Lee and Zhangchen Zhao, with contributions from Larisa Miropolsky and Michael Wu
Maintainer: Seunggeun (Shawn) Lee <lee7801@snu.ac.kr>
Diff between SKAT versions 2.0.0 dated 2020-03-09 and 2.0.1 dated 2020-10-20
DESCRIPTION | 8 ++-- MD5 | 28 ++++++++-------- NAMESPACE | 72 +++++++++++++++++++++--------------------- R/Binary_MAIN_Robust.R | 3 + R/Joint_CommonRare_Robust.R | 3 + build/vignette.rds |binary data/SKAT.example.ChrX.rda |binary data/SKAT.example.rda |binary data/SKAT.fam.example.rda |binary data/SKAT.haplotypes.rda |binary data/SKATBinary.example.rda |binary inst/doc/SKAT.R | 1 inst/doc/SKAT.pdf |binary man/SKAT_CommonRare_Robust.rd | 4 +- man/SSD_FILE_OPEN.rd | 11 +++++- 15 files changed, 70 insertions(+), 60 deletions(-)
Title: Connector Between 'mlr3' and 'OpenML'
Description: Provides an interface to 'OpenML.org' to list and
download machine learning data and tasks. Data and tasks can be
automatically converted to 'mlr3' tasks. For a more sophisticated
interface which also allows uploading experiments, see the 'OpenML'
package.
Author: Michel Lang [cre, aut] (<https://orcid.org/0000-0001-9754-0393>)
Maintainer: Michel Lang <michellang@gmail.com>
Diff between mlr3oml versions 0.3.0 dated 2020-10-05 and 0.4.0 dated 2020-10-20
DESCRIPTION | 8 ++++---- MD5 | 18 +++++++++--------- NEWS.md | 8 ++++++++ R/helper_download.R | 11 ++++++++--- R/read_arff.R | 24 +++++++++++++++--------- R/zzz.R | 3 +++ build/partial.rdb |binary man/mlr3oml-package.Rd | 3 +++ tests/testthat/test_OMLData.R | 4 ++++ tests/testthat/test_read_arff.R | 4 +++- 10 files changed, 57 insertions(+), 26 deletions(-)
Title: Earth System History Variables
Description: The purpose of the 'chronosphere' project is to facilitate spatially explicit analyses of (paleo)environmental/ecological research. The package serves as a gateway to plate tectonic reconstructions, deep time global climate model results as well as fossil occurrence datasets such as the Paleobiology Database <https://paleobiodb.org/> and the PaleoReefs Database <https://www.paleo-reefs.pal.uni-erlangen.de/>. Environmental data stored on a remote server can be downloaded and imported directly to the R environment. Query functions to the GPlates <https://www.gplates.org/> desktop application or the GPlates Web Service <https://gws.gplates.org/> allow users to reconstruct coordinates, static plates, and Spatial objects. A wrapper class 'RasterArray' is implemented around the 'RasterLayer' class, allowing the organization of spatially explicit raster data in n-dimensional arrays. The project is developed under the umbrella of the DFG (Deutsche Forschungsgemeinschaft) Research Unit TERSANE2 (For 2332, TEmperature Related Stressors in ANcient Extinctions).
Author: Adam T. Kocsis, Nussaibah B. Raja
Maintainer: Adam T. Kocsis <adam.t.kocsis@gmail.com>
Diff between chronosphere versions 0.3.1 dated 2020-08-10 and 0.4.0 dated 2020-10-20
chronosphere-0.3.1/chronosphere/data/clim.RData |only chronosphere-0.3.1/chronosphere/inst/doc/chronos.R |only chronosphere-0.3.1/chronosphere/inst/doc/chronos.Rmd |only chronosphere-0.3.1/chronosphere/inst/doc/chronos.pdf |only chronosphere-0.3.1/chronosphere/man/as.data.frame.RasterArray.Rd |only chronosphere-0.3.1/chronosphere/man/clim.Rd |only chronosphere-0.3.1/chronosphere/man/dim-RasterArray-method.Rd |only chronosphere-0.3.1/chronosphere/man/plot-RasterArray-missing-method.Rd |only chronosphere-0.3.1/chronosphere/man/sub-RasterArray-ANY-ANY-method.Rd |only chronosphere-0.3.1/chronosphere/man/sub-sub-RasterArray-ANY-ANY-method.Rd |only chronosphere-0.3.1/chronosphere/man/sub-subset-RasterArray-ANY-ANY-method.Rd |only chronosphere-0.3.1/chronosphere/man/subset-RasterArray-method.Rd |only chronosphere-0.3.1/chronosphere/man/t-RasterArray-method.Rd |only chronosphere-0.3.1/chronosphere/vignettes/chronos.Rmd |only chronosphere-0.4.0/chronosphere/DESCRIPTION | 19 chronosphere-0.4.0/chronosphere/MD5 | 135 ++- chronosphere-0.4.0/chronosphere/NAMESPACE | 13 chronosphere-0.4.0/chronosphere/R/RasterArray-base.R | 250 ------ chronosphere-0.4.0/chronosphere/R/RasterArray-cast.R | 8 chronosphere-0.4.0/chronosphere/R/RasterArray-combine.R | 315 ------- chronosphere-0.4.0/chronosphere/R/RasterArray-raster.R | 5 chronosphere-0.4.0/chronosphere/R/RasterArray-subset.R | 398 ---------- chronosphere-0.4.0/chronosphere/R/RasterArray-xattrib.R | 241 ------ chronosphere-0.4.0/chronosphere/R/SpatialArray-base.R |only chronosphere-0.4.0/chronosphere/R/SpatialArray-cast.R |only chronosphere-0.4.0/chronosphere/R/SpatialArray-combine.R |only chronosphere-0.4.0/chronosphere/R/SpatialArray-sp.R |only chronosphere-0.4.0/chronosphere/R/SpatialArray-subset.R |only chronosphere-0.4.0/chronosphere/R/SpatialStack-base.R |only chronosphere-0.4.0/chronosphere/R/SpatialStack-sp.R |only chronosphere-0.4.0/chronosphere/R/SpatialStack-subset.R |only chronosphere-0.4.0/chronosphere/R/XArray-apply.R |only chronosphere-0.4.0/chronosphere/R/XArray-base.R |only chronosphere-0.4.0/chronosphere/R/XArray-combine.R |only chronosphere-0.4.0/chronosphere/R/XArray-subset.R |only chronosphere-0.4.0/chronosphere/R/XArray-xattrib.R |only chronosphere-0.4.0/chronosphere/R/classes.R |only chronosphere-0.4.0/chronosphere/R/data.R | 28 chronosphere-0.4.0/chronosphere/R/fetching.R | 16 chronosphere-0.4.0/chronosphere/R/info.R | 156 +-- chronosphere-0.4.0/chronosphere/R/plotting.R | 25 chronosphere-0.4.0/chronosphere/R/reconstruction.R | 59 + chronosphere-0.4.0/chronosphere/R/utility.R | 355 +++++--- chronosphere-0.4.0/chronosphere/R/zzz.R | 5 chronosphere-0.4.0/chronosphere/build/vignette.rds |binary chronosphere-0.4.0/chronosphere/data/coasts.RData |only chronosphere-0.4.0/chronosphere/data/datalist | 2 chronosphere-0.4.0/chronosphere/inst/CITATION | 1 chronosphere-0.4.0/chronosphere/inst/NEWS.md | 53 + chronosphere-0.4.0/chronosphere/inst/doc/chronosphere.R |only chronosphere-0.4.0/chronosphere/inst/doc/chronosphere.Rmd |only chronosphere-0.4.0/chronosphere/inst/doc/chronosphere.html |only chronosphere-0.4.0/chronosphere/man/RasterArray-class.Rd | 2 chronosphere-0.4.0/chronosphere/man/SpatialArray-class.Rd |only chronosphere-0.4.0/chronosphere/man/SpatialStack-class.Rd |only chronosphere-0.4.0/chronosphere/man/adimatt.Rd | 22 chronosphere-0.4.0/chronosphere/man/apply-methods.Rd | 14 chronosphere-0.4.0/chronosphere/man/arraylength.Rd | 21 chronosphere-0.4.0/chronosphere/man/as.data.frame-methods.Rd |only chronosphere-0.4.0/chronosphere/man/as.list-SpatialArray-method.Rd |only chronosphere-0.4.0/chronosphere/man/asRasterArray.Rd | 20 chronosphere-0.4.0/chronosphere/man/asSpatialArray.Rd |only chronosphere-0.4.0/chronosphere/man/bind-methods.Rd | 15 chronosphere-0.4.0/chronosphere/man/cellStats-RasterArray-method.Rd | 4 chronosphere-0.4.0/chronosphere/man/chronosphere.Rd | 2 chronosphere-0.4.0/chronosphere/man/coasts.Rd |only chronosphere-0.4.0/chronosphere/man/colnames.Rd | 24 chronosphere-0.4.0/chronosphere/man/combine.Rd | 16 chronosphere-0.4.0/chronosphere/man/datasets.Rd | 6 chronosphere-0.4.0/chronosphere/man/dems.Rd | 3 chronosphere-0.4.0/chronosphere/man/dim-XArray-method.Rd |only chronosphere-0.4.0/chronosphere/man/dimnames.Rd | 24 chronosphere-0.4.0/chronosphere/man/doubleBracketReplace.Rd |only chronosphere-0.4.0/chronosphere/man/is.na.SpatialArray.Rd |only chronosphere-0.4.0/chronosphere/man/layers.Rd | 12 chronosphere-0.4.0/chronosphere/man/mapedge.Rd |only chronosphere-0.4.0/chronosphere/man/mapplot.Rd | 3 chronosphere-0.4.0/chronosphere/man/names.Rd | 28 chronosphere-0.4.0/chronosphere/man/plots.Rd |only chronosphere-0.4.0/chronosphere/man/proxy.Rd | 18 chronosphere-0.4.0/chronosphere/man/reconstruct.Rd | 13 chronosphere-0.4.0/chronosphere/man/replacementSingle-spatialstack.Rd |only chronosphere-0.4.0/chronosphere/man/replacementSingle.Rd | 36 chronosphere-0.4.0/chronosphere/man/rownames.Rd | 24 chronosphere-0.4.0/chronosphere/man/shaper.Rd | 2 chronosphere-0.4.0/chronosphere/man/spTransform.Rd |only chronosphere-0.4.0/chronosphere/man/stack.Rd |only chronosphere-0.4.0/chronosphere/man/sub-SpatialStack-ANY-ANY-method.Rd |only chronosphere-0.4.0/chronosphere/man/sub-XArray-ANY-ANY-method.Rd |only chronosphere-0.4.0/chronosphere/man/sub-sub-SpatialStack-ANY-ANY-method.Rd |only chronosphere-0.4.0/chronosphere/man/sub-sub-XArray-ANY-ANY-method.Rd |only chronosphere-0.4.0/chronosphere/man/subset-SpatialStack-method.Rd |only chronosphere-0.4.0/chronosphere/man/subset-XArray-method.Rd |only chronosphere-0.4.0/chronosphere/man/t-methods.Rd |only chronosphere-0.4.0/chronosphere/man/types.Rd |only chronosphere-0.4.0/chronosphere/vignettes/chronosphere.Rmd |only 96 files changed, 762 insertions(+), 1631 deletions(-)
Title: Stratigraphic Data Analysis
Description: A fast, consistent tool for plotting and facilitating the analysis of stratigraphic
and sedimentological data. Taking advantage of the flexible plotting tools available in R,
'SDAR' uses stratigraphic and sedimentological data to produce detailed graphic logs for
outcrop sections and borehole logs. These logs can include multiple features (e.g., bed thickness,
lithology, samples, sedimentary structures, colors, fossil content, bioturbation index,
gamma ray logs) (Johnson, 1992, <ISSN 0037-0738>).
Author: John R. Ortiz [aut, cre],
Carlos Jaramillo [aut],
Carlos Moreno [ctb]
Maintainer: John R. Ortiz <jrortizt@unal.edu.co>
Diff between SDAR versions 0.9-3 dated 2019-10-24 and 0.9-5 dated 2020-10-20
SDAR-0.9-3/SDAR/data/log_demo.rda |only SDAR-0.9-3/SDAR/data/saltarin.rda |only SDAR-0.9-3/SDAR/inst/demo_data_entry |only SDAR-0.9-3/SDAR/inst/doc/introduction-to-sdar.R |only SDAR-0.9-3/SDAR/inst/doc/introduction-to-sdar.Rmd |only SDAR-0.9-3/SDAR/inst/doc/introduction-to-sdar.html |only SDAR-0.9-3/SDAR/man/log_demo.Rd |only SDAR-0.9-3/SDAR/man/saltarin.Rd |only SDAR-0.9-3/SDAR/vignettes/SDAR_graphical_output.png |only SDAR-0.9-3/SDAR/vignettes/introduction-to-sdar.Rmd |only SDAR-0.9-3/SDAR/vignettes/saltarin_well_SDAR_500.png |only SDAR-0.9-3/SDAR/vignettes/saltarin_well_SDAR_symbols.png |only SDAR-0.9-5/SDAR/DESCRIPTION | 11 SDAR-0.9-5/SDAR/MD5 | 63 SDAR-0.9-5/SDAR/NAMESPACE | 7 SDAR-0.9-5/SDAR/R/patterns.R | 1287 +++++++++++---- SDAR-0.9-5/SDAR/R/plot.strata.R | 851 +++++++-- SDAR-0.9-5/SDAR/R/read.LAS.R | 7 SDAR-0.9-5/SDAR/R/reference_tables.R | 784 ++++++--- SDAR-0.9-5/SDAR/R/strata-methods.R | 10 SDAR-0.9-5/SDAR/R/sysdata.rda |binary SDAR-0.9-5/SDAR/R/utility_functions.R | 76 SDAR-0.9-5/SDAR/build/vignette.rds |binary SDAR-0.9-5/SDAR/data/saltarin_beds.rda |only SDAR-0.9-5/SDAR/data/saltarin_log.rda |only SDAR-0.9-5/SDAR/inst/CITATION |only SDAR-0.9-5/SDAR/inst/doc/SDAR_data_model.R |only SDAR-0.9-5/SDAR/inst/doc/SDAR_data_model.Rmd |only SDAR-0.9-5/SDAR/inst/doc/SDAR_data_model.html |only SDAR-0.9-5/SDAR/inst/doc/introduction_to_SDAR.R |only SDAR-0.9-5/SDAR/inst/doc/introduction_to_SDAR.Rmd |only SDAR-0.9-5/SDAR/inst/doc/introduction_to_SDAR.html |only SDAR-0.9-5/SDAR/inst/extdata |only SDAR-0.9-5/SDAR/man/SDAR-package.Rd | 8 SDAR-0.9-5/SDAR/man/plot.Rd | 94 - SDAR-0.9-5/SDAR/man/read.LAS.Rd | 15 SDAR-0.9-5/SDAR/man/saltarin_beds.Rd |only SDAR-0.9-5/SDAR/man/saltarin_log.Rd |only SDAR-0.9-5/SDAR/man/strata-class.Rd | 8 SDAR-0.9-5/SDAR/man/summary.Rd | 4 SDAR-0.9-5/SDAR/vignettes/SDAR_data_model.Rmd |only SDAR-0.9-5/SDAR/vignettes/SDAR_output_fig_1.png |only SDAR-0.9-5/SDAR/vignettes/SDAR_output_fig_2.png |only SDAR-0.9-5/SDAR/vignettes/SDAR_output_fig_3.png |only SDAR-0.9-5/SDAR/vignettes/SDAR_output_fig_4.png |only SDAR-0.9-5/SDAR/vignettes/introduction_to_SDAR.Rmd |only 46 files changed, 2348 insertions(+), 877 deletions(-)
Title: 'Rcpp' Integration of Different "Ziggurat" Normal RNG
Implementations
Description: The Ziggurat generator for normally distributed random
numbers, originally proposed by Marsaglia and Tsang (2000,
<doi:10.18637/jss.v005.i08>) has been improved upon a few times
starting with Leong et al (2005, <doi:10.18637/jss.v012.i07>).
This package provides an aggregation in order to compare different
implementations in order to provide an 'faster but good enough'
alternative for use with R and C++ code.
Author: Dirk Eddelbuettel
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppZiggurat versions 0.1.5 dated 2018-06-10 and 0.1.6 dated 2020-10-20
RcppZiggurat-0.1.5/RcppZiggurat/src/init.c |only RcppZiggurat-0.1.6/RcppZiggurat/ChangeLog | 52 +++++++++++ RcppZiggurat-0.1.6/RcppZiggurat/DESCRIPTION | 10 +- RcppZiggurat-0.1.6/RcppZiggurat/MD5 | 33 +++---- RcppZiggurat-0.1.6/RcppZiggurat/R/RcppExports.R | 8 + RcppZiggurat-0.1.6/RcppZiggurat/README.md | 9 + RcppZiggurat-0.1.6/RcppZiggurat/build/vignette.rds |binary RcppZiggurat-0.1.6/RcppZiggurat/cleanup | 2 RcppZiggurat-0.1.6/RcppZiggurat/inst/NEWS.Rd | 10 ++ RcppZiggurat-0.1.6/RcppZiggurat/inst/doc/RcppZiggurat.R | 16 +-- RcppZiggurat-0.1.6/RcppZiggurat/inst/doc/RcppZiggurat.Rmd | 28 ++---- RcppZiggurat-0.1.6/RcppZiggurat/inst/doc/RcppZiggurat.pdf |binary RcppZiggurat-0.1.6/RcppZiggurat/inst/include/Ziggurat.h | 17 +++ RcppZiggurat-0.1.6/RcppZiggurat/man/RcppZiggurat-package.Rd | 8 - RcppZiggurat-0.1.6/RcppZiggurat/man/ziggurat.Rd | 19 +++- RcppZiggurat-0.1.6/RcppZiggurat/src/RcppExports.cpp | 56 ++++++++++++ RcppZiggurat-0.1.6/RcppZiggurat/src/ziggurat.cpp | 14 +++ RcppZiggurat-0.1.6/RcppZiggurat/vignettes/RcppZiggurat.Rmd | 28 ++---- 18 files changed, 235 insertions(+), 75 deletions(-)
Title: 'Rcpp' Integration for the 'Armadillo' Templated Linear Algebra
Library
Description: 'Armadillo' is a templated C++ linear algebra library (by Conrad
Sanderson) that aims towards a good balance between speed and ease of use. Integer,
floating point and complex numbers are supported, as well as a subset of
trigonometric and statistics functions. Various matrix decompositions are
provided through optional integration with LAPACK and ATLAS libraries.
The 'RcppArmadillo' package includes the header files from the templated
'Armadillo' library. Thus users do not need to install 'Armadillo' itself in
order to use 'RcppArmadillo'. From release 7.800.0 on, 'Armadillo' is
licensed under Apache License 2; previous releases were under licensed as
MPL 2.0 from version 3.800.0 onwards and LGPL-3 prior to that;
'RcppArmadillo' (the 'Rcpp' bindings/bridge to Armadillo) is licensed under
the GNU GPL version 2 or later, as is the rest of 'Rcpp'. Note that
Armadillo requires a fairly recent compiler; for the g++ family at least
version 4.6.* is required.
Author: Dirk Eddelbuettel, Romain Francois, Doug Bates and Binxiang Ni
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppArmadillo versions 0.9.900.3.0 dated 2020-09-03 and 0.10.1.0.0 dated 2020-10-20
RcppArmadillo-0.10.1.0.0/RcppArmadillo/ChangeLog | 24 RcppArmadillo-0.10.1.0.0/RcppArmadillo/DESCRIPTION | 8 RcppArmadillo-0.10.1.0.0/RcppArmadillo/MD5 | 517 ++--- RcppArmadillo-0.10.1.0.0/RcppArmadillo/README.md | 6 RcppArmadillo-0.10.1.0.0/RcppArmadillo/configure | 18 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/NEWS.Rd | 39 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/doc/RcppArmadillo-intro.pdf |binary RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/doc/RcppArmadillo-sparseMatrix.pdf |binary RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/RcppArmadillo/Mat_meat.h | 8 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo | 56 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/Base_bones.hpp | 3 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/Base_meat.hpp | 26 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/Col_bones.hpp | 22 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/Col_meat.hpp | 214 +- RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/CubeToMatOp_bones.hpp | 8 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/Cube_bones.hpp | 39 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/Cube_meat.hpp | 433 ++-- RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/GenCube_bones.hpp | 6 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/Gen_bones.hpp | 12 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/GlueCube_bones.hpp | 5 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/Glue_bones.hpp | 16 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/MapMat_bones.hpp | 8 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/MapMat_meat.hpp | 142 - RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/Mat_bones.hpp | 85 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/Mat_meat.hpp | 888 +++++----- RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/OpCube_bones.hpp | 2 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/Op_bones.hpp | 16 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/Proxy.hpp | 780 ++++---- RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/ProxyCube.hpp | 90 - RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/Row_bones.hpp | 22 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/Row_meat.hpp | 214 +- RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/SpCol_bones.hpp | 6 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/SpCol_meat.hpp | 14 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/SpGlue_bones.hpp | 8 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/SpMat_bones.hpp | 67 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/SpMat_iterators_meat.hpp | 263 +- RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/SpMat_meat.hpp | 487 +++-- RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/SpOp_bones.hpp | 8 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/SpProxy.hpp | 173 + RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/SpRow_bones.hpp | 6 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/SpRow_meat.hpp | 10 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/SpSubview_bones.hpp | 195 +- RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/SpSubview_col_list_bones.hpp |only RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/SpSubview_col_list_meat.hpp |only RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/SpSubview_iterators_meat.hpp | 81 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/SpSubview_meat.hpp | 202 -- RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/SpToDOp_bones.hpp | 17 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/SpValProxy_bones.hpp | 5 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/SpValProxy_meat.hpp | 52 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/access.hpp | 14 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/arma_cmath.hpp | 596 ------ RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/arma_config.hpp | 91 - RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/arma_forward.hpp | 90 - RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/arma_ostream_bones.hpp | 4 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/arma_rng.hpp | 76 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/arma_rng_cxx11.hpp | 6 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/arma_rng_cxx98.hpp | 4 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/arma_static_check.hpp | 46 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/arma_str.hpp | 54 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/arma_version.hpp | 14 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/arrayops_bones.hpp | 8 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/auxlib_bones.hpp | 10 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/auxlib_meat.hpp | 4 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/compiler_check.hpp |only RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/compiler_setup.hpp | 163 - RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/config.hpp | 45 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/constants.hpp | 89 - RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/constants_old.hpp | 8 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/debug.hpp | 13 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/def_superlu.hpp | 15 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/diagmat_proxy.hpp | 44 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/diagview_bones.hpp | 18 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/diskio_bones.hpp | 2 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/diskio_meat.hpp | 325 +-- RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/eGlueCube_bones.hpp | 8 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/eGlue_bones.hpp | 14 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/eOpCube_bones.hpp | 8 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/eOp_bones.hpp | 14 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/eglue_core_meat.hpp | 22 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/eop_aux.hpp | 93 - RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/eop_core_bones.hpp | 4 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/eop_core_meat.hpp | 22 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/fft_engine.hpp | 2 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/field_bones.hpp | 14 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/field_meat.hpp | 401 ++-- RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/fn_approx_equal.hpp | 8 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/fn_as_scalar.hpp | 2 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/fn_chi2rnd.hpp | 32 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/fn_chol.hpp | 4 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/fn_clamp.hpp | 2 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/fn_conv.hpp | 4 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/fn_conv_to.hpp | 44 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/fn_det.hpp | 40 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/fn_eig_gen.hpp | 8 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/fn_eig_sym.hpp | 2 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/fn_eigs_gen.hpp | 361 +++- RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/fn_eigs_sym.hpp | 210 ++ RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/fn_elem.hpp | 16 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/fn_eps.hpp | 4 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/fn_eye.hpp | 8 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/fn_find.hpp | 2 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/fn_hess.hpp | 6 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/fn_inplace_strans.hpp | 2 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/fn_inplace_trans.hpp | 6 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/fn_interp1.hpp | 2 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/fn_interp2.hpp | 2 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/fn_inv.hpp | 204 -- RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/fn_log_det.hpp | 6 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/fn_log_normpdf.hpp | 2 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/fn_lu.hpp | 4 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/fn_misc.hpp | 20 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/fn_norm.hpp | 12 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/fn_normalise.hpp | 6 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/fn_normcdf.hpp | 128 - RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/fn_normpdf.hpp | 2 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/fn_ones.hpp | 10 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/fn_pinv.hpp | 4 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/fn_princomp.hpp | 10 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/fn_qr.hpp | 6 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/fn_qz.hpp | 2 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/fn_randg.hpp | 189 -- RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/fn_randi.hpp | 10 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/fn_randn.hpp | 10 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/fn_randu.hpp | 10 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/fn_rank.hpp | 2 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/fn_reshape.hpp | 52 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/fn_schur.hpp | 6 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/fn_solve.hpp | 192 -- RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/fn_sort.hpp | 82 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/fn_sort_index.hpp | 48 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/fn_speye.hpp | 4 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/fn_sprandn.hpp | 4 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/fn_sprandu.hpp | 4 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/fn_spsolve.hpp | 8 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/fn_strans.hpp | 16 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/fn_svd.hpp | 16 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/fn_svds.hpp | 20 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/fn_syl_lyap.hpp | 4 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/fn_trans.hpp | 8 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/fn_zeros.hpp | 14 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/glue_affmul_bones.hpp | 6 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/glue_atan2_meat.hpp | 4 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/glue_conv_bones.hpp | 6 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/glue_cor_bones.hpp | 6 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/glue_cov_bones.hpp | 6 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/glue_cross_bones.hpp | 6 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/glue_hist_bones.hpp | 6 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/glue_histc_bones.hpp | 6 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/glue_intersect_bones.hpp | 6 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/glue_join_bones.hpp | 12 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/glue_kron_bones.hpp | 6 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/glue_mixed_bones.hpp | 6 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/glue_mvnrnd_bones.hpp | 6 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/glue_polyfit_bones.hpp | 6 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/glue_polyval_bones.hpp | 6 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/glue_quantile_bones.hpp | 6 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/glue_solve_bones.hpp | 42 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/glue_times_bones.hpp | 16 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/glue_trapz_bones.hpp | 6 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/gmm_diag_bones.hpp | 12 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/gmm_diag_meat.hpp | 2 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/gmm_full_bones.hpp | 12 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/gmm_full_meat.hpp | 2 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/hdf5_misc.hpp | 238 +- RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/injector_bones.hpp | 30 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/injector_meat.hpp | 23 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/memory.hpp | 66 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/mtGlueCube_bones.hpp | 2 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/mtGlue_bones.hpp | 8 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/mtOpCube_bones.hpp | 6 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/mtOp_bones.hpp | 8 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/mtSpGlue_bones.hpp | 8 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/mtSpOp_bones.hpp | 8 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/mul_gemm.hpp | 4 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/mul_gemv.hpp | 6 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/mul_herk.hpp | 4 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/op_all_bones.hpp | 10 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/op_any_bones.hpp | 10 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/op_chi2rnd_bones.hpp | 4 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/op_chi2rnd_meat.hpp | 101 - RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/op_diagmat_bones.hpp | 4 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/op_diagvec_bones.hpp | 4 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/op_expmat_meat.hpp | 2 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/op_find_bones.hpp | 20 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/op_htrans_bones.hpp | 37 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/op_htrans_meat.hpp | 20 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/op_index_max_bones.hpp | 4 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/op_index_min_bones.hpp | 4 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/op_logmat_meat.hpp | 2 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/op_max_bones.hpp | 8 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/op_median_bones.hpp | 4 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/op_min_bones.hpp | 8 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/op_norm_bones.hpp | 12 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/op_reshape_bones.hpp | 12 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/op_reshape_meat.hpp | 213 -- RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/op_sort_meat.hpp | 6 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/op_sp_minus_meat.hpp | 4 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/op_strans_bones.hpp | 12 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/op_trimat_bones.hpp | 11 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/op_trimat_meat.hpp | 232 -- RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/op_wishrnd_meat.hpp | 126 - RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/operator_div.hpp | 6 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/operator_relational.hpp | 40 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/podarray_bones.hpp | 2 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/podarray_meat.hpp | 29 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/promote_type.hpp | 72 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/restrictors.hpp | 20 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/running_stat_bones.hpp | 8 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/running_stat_vec_bones.hpp | 8 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/sp_auxlib_bones.hpp | 87 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/sp_auxlib_meat.hpp | 721 ++++++-- RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/span.hpp | 4 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/spdiagview_bones.hpp | 14 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/spglue_join_bones.hpp | 12 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/spglue_kron_bones.hpp | 6 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/spglue_max_meat.hpp | 8 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/spglue_merge_meat.hpp | 4 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/spglue_min_meat.hpp | 8 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/spglue_minus_meat.hpp | 4 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/spglue_plus_meat.hpp | 4 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/spglue_relational_bones.hpp | 28 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/spglue_relational_meat.hpp | 263 ++ RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/spglue_schur_meat.hpp | 55 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/spglue_times_bones.hpp | 18 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/spglue_times_meat.hpp | 9 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/spop_htrans_bones.hpp | 10 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/spop_max_bones.hpp | 8 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/spop_max_meat.hpp | 40 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/spop_mean_meat.hpp | 4 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/spop_min_bones.hpp | 8 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/spop_min_meat.hpp | 40 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/spop_strans_bones.hpp | 6 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/spop_var_bones.hpp | 4 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/spop_var_meat.hpp | 14 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/strip.hpp | 24 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/subview_bones.hpp | 65 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/subview_cube_bones.hpp | 9 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/subview_cube_each_bones.hpp | 12 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/subview_cube_meat.hpp | 86 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/subview_cube_slices_bones.hpp | 10 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/subview_each_bones.hpp | 13 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/subview_elem1_bones.hpp | 14 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/subview_elem2_bones.hpp | 23 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/subview_elem2_meat.hpp | 112 + RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/subview_field_bones.hpp | 7 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/subview_meat.hpp | 224 +- RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/traits.hpp | 494 ++--- RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/translate_arpack.hpp | 4 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/translate_superlu.hpp | 113 + RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/typedef_elem.hpp | 28 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/typedef_elem_check.hpp | 30 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/typedef_mat.hpp | 22 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/unwrap.hpp | 704 +++---- RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/unwrap_cube.hpp | 6 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/unwrap_spmat.hpp | 10 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/wall_clock_bones.hpp | 11 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/wall_clock_meat.hpp | 62 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/xtrans_mat_bones.hpp | 10 RcppArmadillo-0.10.1.0.0/RcppArmadillo/inst/include/armadillo_bits/xvec_htrans_bones.hpp | 8 RcppArmadillo-0.9.900.3.0/RcppArmadillo/inst/include/armadillo_bits/compiler_extra.hpp |only RcppArmadillo-0.9.900.3.0/RcppArmadillo/inst/include/armadillo_bits/config.hpp.cmake |only RcppArmadillo-0.9.900.3.0/RcppArmadillo/inst/include/armadillo_bits/spglue_elem_helper_bones.hpp |only RcppArmadillo-0.9.900.3.0/RcppArmadillo/inst/include/armadillo_bits/spglue_elem_helper_meat.hpp |only 263 files changed, 7174 insertions(+), 7486 deletions(-)
Title: An R Package for Estimating a Group-Effect in Latent Class
Analysis
Description: Fits latent class analysis (LCA) including group variable and covariates.
The group variable can be handled either by multilevel LCA described in Vermunt (2003) <DOI:10.1111/j.0081-1750.2003.t01-1-00131.x> or standard LCA at each level of group variable.
The covariates can be incorporated in the form of logistic regression (Bandeen-Roche et al. (1997) <DOI:10.1080/01621459.1997.10473658>).
Author: Youngsun Kim [aut, cre],
Hwan Chung [aut]
Maintainer: Youngsun Kim <kim0sun@korea.ac.kr>
Diff between glca versions 1.0.1 dated 2020-09-08 and 1.0.2 dated 2020-10-20
DESCRIPTION | 15 +++++++++------ MD5 | 22 +++++++++++++--------- NEWS.md |only R/dataset.r | 3 ++- R/glca.gof.R | 1 + R/glca_encode.R | 4 ++-- R/print.glca.R | 6 +++--- R/summary.glca.R | 10 +++++----- build/partial.rdb |binary data/nyts18.rda |binary inst |only man/nyts18.Rd | 6 ++---- tests |only 13 files changed, 37 insertions(+), 30 deletions(-)
Title: A Bunch of Structure and Sequence Analysis
Description: Reads and plots phylogenetic placements.
Author: Pierre Lefeuvre
Maintainer: Pierre Lefeuvre <pierre.lefeuvre@cirad.fr>
Diff between BoSSA versions 3.6 dated 2018-11-06 and 3.7 dated 2020-10-20
DESCRIPTION | 8 +- MD5 | 30 +++---- build/partial.rdb |binary build/vignette.rds |binary inst/doc/bossa-analysis.R | 46 ++++++------ inst/doc/bossa-analysis.Rmd | 10 +- inst/doc/bossa-analysis.html | 164 +++++++++++++++++++++++++------------------ inst/doc/bossa-refpkg.R | 154 ++++++++++++++++++++-------------------- inst/doc/bossa-refpkg.Rmd | 44 +++++++---- inst/doc/bossa-refpkg.html | 87 ++++++++++++++++------ inst/doc/bossa-tree.R | 12 +-- inst/doc/bossa-tree.html | 54 +++++++++++--- man/refpkg.Rd | 3 man/write_jplace.Rd | 3 vignettes/bossa-analysis.Rmd | 10 +- vignettes/bossa-refpkg.Rmd | 44 +++++++---- 16 files changed, 402 insertions(+), 267 deletions(-)
Title: Models for Survival Analysis
Description: Implementations of classical and machine learning models for survival analysis, including deep neural networks via 'keras' and 'tensorflow'. Each model includes a separated fit and predict interface with consistent prediction types for predicting risk, survival probabilities, or survival distributions with 'distr6' <https://CRAN.R-project.org/package=distr6>. Models are either implemented from 'Python' via 'reticulate' <https://CRAN.R-project.org/package=reticulate>, from code in GitHub packages, or novel implementations using 'Rcpp' <https://CRAN.R-project.org/package=Rcpp>. Novel machine learning survival models wil be included in the package in near-future updates. Neural networks are implemented from the 'Python' package 'pycox' <https://github.com/havakv/pycox> and are detailed by Kvamme et al. (2019) <https://jmlr.org/papers/v20/18-424.html>. The 'Akritas' estimator is defined in Akritas (1994) <doi:10.1214/aos/1176325630>. 'DNNSurv' is defined in Zhao and Feng (2020) <arXiv:1908.02337>.
Author: Raphael Sonabend [aut, cre] (<https://orcid.org/0000-0001-9225-4654>)
Maintainer: Raphael Sonabend <raphael.sonabend.15@ucl.ac.uk>
Diff between survivalmodels versions 0.1.0 dated 2020-10-15 and 0.1.1 dated 2020-10-20
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NEWS.md | 4 ++++ build/partial.rdb |binary src/C_akritas.cpp | 13 +++++-------- 5 files changed, 17 insertions(+), 16 deletions(-)
More information about survivalmodels at CRAN
Permanent link
Title: Search Contributed R Packages, Sort by Package
Description: Search contributed R packages, sort by package.
Author: Spencer Graves [cre, aut, cph],
Sundar Dorai-Raj [aut], and Romain Francois [ctb]
Maintainer: Spencer Graves <spencer.graves@prodsyse.com>
Diff between sos versions 2.0-0 dated 2017-07-03 and 2.0-2 dated 2020-10-20
DESCRIPTION | 16 +- MD5 | 47 ++++---- NEWS | 6 - R/PackageSum2.R | 2 R/findFn.R | 2 R/packageSum.R | 4 R/writeFindFn2xls.R | 69 +++++++----- build/vignette.rds |binary inst/WORDLIST |only inst/doc/sos.Rnw | 10 - inst/doc/sos.pdf |binary man/Extract.findFn.Rd | 36 +++--- man/PackageSum2.Rd | 27 ++--- man/PackageSummary.Rd | 75 +++++++------ man/back2ForwardSlash.Rd | 153 ++++++++++++++-------------- man/findFn.Rd | 253 ++++++++++++++++++++++++++--------------------- man/hits.Rd | 20 ++- man/packageSum.Rd | 69 +++++++----- man/print.findFn.Rd | 38 +++---- man/print.packageSum.Rd | 34 +++--- man/sortFindFn.Rd | 22 ++-- man/summary.findFn.Rd | 100 ++++++++++-------- man/unionFindFn.Rd | 44 ++++---- man/writeFindFn2xls.Rd | 34 +++--- vignettes/sos.Rnw | 10 - 25 files changed, 591 insertions(+), 480 deletions(-)
More information about SimSurvNMarker at CRAN
Permanent link
More information about PortalHacienda at CRAN
Permanent link
Title: Axis Labeling
Description: Functions which provide a range of axis labeling algorithms.
Author: Justin Talbot,
Maintainer: Nuno Sempere <nuno.semperelh@gmail.com>
Diff between labeling versions 0.3 dated 2014-08-23 and 0.4.2 dated 2020-10-20
DESCRIPTION | 21 +++++++++------------ LICENSE | 2 +- MD5 | 10 +++++----- NAMESPACE | 2 ++ R/labeling.R | 6 ++++++ man/matplotlib.Rd | 2 +- 6 files changed, 24 insertions(+), 19 deletions(-)
Title: Miscellaneous Functions in C++
Description: Provides utility functions that are simply, frequently used,
but may require higher performance that what can be obtained from base R.
Incidentally provides support for 'reverse geocoding', such as matching a point
with its nearest neighbour in another array. Used as a complement to package
'hutils' by sacrificing compilation or installation time for higher running
speeds. The name is a portmanteau of the author and 'Rcpp'.
Author: Hugh Parsonage [aut, cre]
Maintainer: Hugh Parsonage <hugh.parsonage@gmail.com>
Diff between hutilscpp versions 0.5.1 dated 2020-10-13 and 0.5.2 dated 2020-10-20
DESCRIPTION | 6 MD5 | 20 NEWS.md | 379 ++--- R/RcppExports.R | 8 R/which_first.R | 973 +++++++------- src/RcppExports.cpp | 22 src/allocate.cpp | 15 src/do_which_first.cpp | 14 src/do_which_last.cpp | 14 tests/testthat/test-which_first.R | 2567 +++++++++++++++++++------------------- tests/testthat/test-which_last.R | 1392 ++++++++++---------- 11 files changed, 2732 insertions(+), 2678 deletions(-)
Title: Toolbox for Model Building and Forecasting
Description: Implements functions and instruments for regression model building and its
application to forecasting. The main scope of the package is in variables selection
and models specification for cases of time series data. This includes promotional
modelling, selection between different dynamic regressions with non-standard
distributions of errors, selection based on cross validation, solutions to the fat
regression model problem and more. Models developed in the package are tailored
specifically for forecasting purposes. So as a results there are several methods
that allow producing forecasts from these models and visualising them.
Author: Ivan Svetunkov [aut, cre] (Lecturer at Centre for Marketing Analytics
and Forecasting, Lancaster University, UK),
Yves R. Sagaert [ctb] (Visiting Research at Centre for Marketing
Analytics and Forecasting, Lancaster University, UK)
Maintainer: Ivan Svetunkov <ivan@svetunkov.ru>
Diff between greybox versions 0.6.2 dated 2020-09-02 and 0.6.3 dated 2020-10-20
DESCRIPTION | 10 MD5 | 40 +-- NAMESPACE | 4 NEWS | 19 + R/alm.R | 66 ++--- R/detector-dst-leap.R | 23 + R/methods.R | 118 ++++++--- R/xregExpander.R | 22 - R/zzz.R | 1 build/partial.rdb |binary build/vignette.rds |binary inst/doc/alm.html | 239 +++++++++--------- inst/doc/greybox.R | 30 -- inst/doc/greybox.Rmd | 68 +---- inst/doc/greybox.html | 554 +++++++++++++++++++++++++++---------------- inst/doc/maUsingGreybox.html | 4 inst/doc/ro.html | 28 +- man/alm.Rd | 36 +- man/detectdst.Rd | 7 man/xregExpander.Rd | 2 vignettes/greybox.Rmd | 68 +---- 21 files changed, 745 insertions(+), 594 deletions(-)
Title: Convert Statistical Objects into Tidy Tibbles
Description: Summarizes key information about statistical
objects in tidy tibbles. This makes it easy to report results, create
plots and consistently work with large numbers of models at once.
Broom provides three verbs that each provide different types of
information about a model. tidy() summarizes information about model
components such as coefficients of a regression. glance() reports
information about an entire model, such as goodness of fit measures
like AIC and BIC. augment() adds information about individual
observations to a dataset, such as fitted values or influence
measures.
Author: David Robinson [aut],
Alex Hayes [aut, cre] (<https://orcid.org/0000-0002-4985-5160>),
Simon Couch [aut],
Indrajeet Patil [ctb] (<https://orcid.org/0000-0003-1995-6531>),
Derek Chiu [ctb],
Matthieu Gomez [ctb],
Boris Demeshev [ctb],
Dieter Menne [ctb],
Benjamin Nutter [ctb],
Luke Johnston [ctb],
Ben Bolker [ctb],
Francois Briatte [ctb],
Jeffrey Arnold [ctb],
Jonah Gabry [ctb],
Luciano Selzer [ctb],
Gavin Simpson [ctb],
Jens Preussner [ctb],
Jay Hesselberth [ctb],
Hadley Wickham [ctb],
Matthew Lincoln [ctb],
Alessandro Gasparini [ctb],
Lukasz Komsta [ctb],
Frederick Novometsky [ctb],
Wilson Freitas [ctb],
Michelle Evans [ctb],
Jason Cory Brunson [ctb],
Simon Jackson [ctb],
Ben Whalley [ctb],
Karissa Whiting [ctb],
Yves Rosseel [ctb],
Michael Kuehn [ctb],
Jorge Cimentada [ctb],
Erle Holgersen [ctb],
Karl Dunkle Werner [ctb] (<https://orcid.org/0000-0003-0523-7309>),
Ethan Christensen [ctb],
Steven Pav [ctb],
Paul PJ [ctb],
Ben Schneider [ctb],
Patrick Kennedy [ctb],
Lily Medina [ctb],
Brian Fannin [ctb],
Jason Muhlenkamp [ctb],
Matt Lehman [ctb],
Bill Denney [ctb] (<https://orcid.org/0000-0002-5759-428X>),
Nic Crane [ctb],
Andrew Bates [ctb],
Vincent Arel-Bundock [ctb] (<https://orcid.org/0000-0003-2042-7063>),
Hideaki Hayashi [ctb],
Luis Tobalina [ctb],
Annie Wang [ctb],
Wei Yang Tham [ctb],
Clara Wang [ctb],
Abby Smith [ctb] (<https://orcid.org/0000-0002-3207-0375>),
Jasper Cooper [ctb] (<https://orcid.org/0000-0002-8639-3188>),
E Auden Krauska [ctb] (<https://orcid.org/0000-0002-1466-5850>),
Alex Wang [ctb],
Malcolm Barrett [ctb] (<https://orcid.org/0000-0003-0299-5825>),
Charles Gray [ctb] (<https://orcid.org/0000-0002-9978-011X>),
Jared Wilber [ctb],
Vilmantas Gegzna [ctb] (<https://orcid.org/0000-0002-9500-5167>),
Eduard Szoecs [ctb],
Frederik Aust [ctb] (<https://orcid.org/0000-0003-4900-788X>),
Angus Moore [ctb],
Nick Williams [ctb],
Marius Barth [ctb] (<https://orcid.org/0000-0002-3421-6665>),
Bruna Wundervald [ctb] (<https://orcid.org/0000-0001-8163-220X>),
Joyce Cahoon [ctb] (<https://orcid.org/0000-0001-7217-4702>),
Grant McDermott [ctb] (<https://orcid.org/0000-0001-7883-8573>),
Kevin Zarca [ctb],
Shiro Kuriwaki [ctb] (<https://orcid.org/0000-0002-5687-2647>),
Lukas Wallrich [ctb] (<https://orcid.org/0000-0003-2121-5177>),
James Martherus [ctb] (<https://orcid.org/0000-0002-8285-3300>),
Chuliang Xiao [ctb] (<https://orcid.org/0000-0002-8466-9398>),
Joseph Larmarange [ctb],
Max Kuhn [ctb],
Michal Bojanowski [ctb],
Hakon Malmedal [ctb],
Clara Wang [ctb],
Sergio Oller [ctb],
Luke Sonnet [ctb],
Jim Hester [ctb],
Cory Brunson [ctb],
Ben Schneider [ctb],
Bernie Gray [ctb] (<https://orcid.org/0000-0001-9190-6032>),
Mara Averick [ctb],
Aaron Jacobs [ctb],
Andreas Bender [ctb],
Sven Templer [ctb],
Paul-Christian Buerkner [ctb],
Matthew Kay [ctb],
Erwan Le Pennec [ctb],
Johan Junkka [ctb],
Hao Zhu [ctb],
Benjamin Soltoff [ctb],
Zoe Wilkinson Saldana [ctb],
Tyler Littlefield [ctb],
Charles T. Gray [ctb],
Shabbh E. Banks [ctb],
Serina Robinson [ctb],
Roger Bivand [ctb],
Riinu Ots [ctb],
Nicholas Williams [ctb],
Nina Jakobsen [ctb],
Michael Weylandt [ctb],
Lisa Lendway [ctb],
Karl Hailperin [ctb],
Josue Rodriguez [ctb],
Jenny Bryan [ctb],
Chris Jarvis [ctb],
Greg Macfarlane [ctb],
Brian Mannakee [ctb],
Drew Tyre [ctb],
Shreyas Singh [ctb],
Laurens Geffert [ctb],
Hong Ooi [ctb],
Henrik Bengtsson [ctb],
Eduard Szocs [ctb],
David Hugh-Jones [ctb],
Matthieu Stigler [ctb],
Hugo Tavares [ctb] (<https://orcid.org/0000-0001-9373-2726>),
R. Willem Vervoort [ctb],
Brenton M. Wiernik [ctb]
Maintainer: Alex Hayes <alexpghayes@gmail.com>
Diff between broom versions 0.7.1 dated 2020-10-01 and 0.7.2 dated 2020-10-20
DESCRIPTION | 6 +-- MD5 | 30 +++++++-------- NEWS.md | 6 +++ R/aaa-documentation-helper.R | 20 +++++----- R/btergm-tidiers.R | 35 ------------------ R/data-frame-tidiers.R | 4 +- R/emmeans-tidiers.R | 1 R/stats-htest-tidiers.R | 12 +++--- R/stats-lm-tidiers.R | 8 +++- inst/doc/adding-tidiers.html | 13 +++++- inst/doc/available-methods.html | 13 +++++- inst/doc/bootstrapping.html | 13 +++++- inst/doc/broom.html | 76 ++++++++++++++++++++++++++++++++++++++-- inst/doc/broom_and_dplyr.html | 76 ++++++++++++++++++++++++++++++++++++++-- inst/doc/kmeans.html | 9 ++++ man/tidy.btergm.Rd | 36 ------------------ 16 files changed, 241 insertions(+), 117 deletions(-)
Title: Functions to Analyze Single System Data
Description: Functions to visually and statistically analyze single system data.
Author: Charles Auerbach [aut, cre],
Wendy Zeitlin [aut]
Maintainer: Charles Auerbach <auerbach@yu.edu>
Diff between SSDforR versions 1.5.18 dated 2020-09-16 and 1.5.19 dated 2020-10-20
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- R/IQRline.R | 17 ++++++++++------- man/Append.Rd | 5 ++++- man/Arimama.Rd | 5 ++++- man/metareg.Rd | 1 + man/metaregi.Rd | 1 + man/pandabove.rd | 5 ++++- 8 files changed, 35 insertions(+), 21 deletions(-)
Title: Deep Gaussian Mixture Models
Description: Deep Gaussian mixture models as proposed by Viroli and McLachlan (2019)
<doi:10.1007/s11222-017-9793-z> provide a generalization of classical Gaussian mixtures
to multiple layers. Each layer contains a set of latent variables that follow a mixture of
Gaussian distributions. To avoid overparameterized solutions, dimension reduction is
applied at each layer by way of factor models.
Author: Cinzia Viroli, Geoffrey J. McLachlan
Maintainer: Suren Rathnayake <surenr@gmail.com>
Diff between deepgmm versions 0.1.59 dated 2019-12-16 and 0.1.62 dated 2020-10-20
DESCRIPTION | 16 ++++++++-------- MD5 | 18 +++++++++--------- NAMESPACE | 4 ++-- R/deepgmm.R | 31 +++++++++++++++++++++++++------ R/factanal_para.R | 23 ++++++++++++++--------- R/initial_clustering.R | 8 ++++++++ man/deepgmm.Rd | 28 ++++++++++++++++------------ tests/tests_l1.R | 6 +++--- tests/tests_l2.R | 14 ++------------ tests/tests_l3.R | 11 ++--------- 10 files changed, 89 insertions(+), 70 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-10-05 0.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-07-11 1.1.0
2020-07-06 1.0.0
Title: 'sf'-Based Interface to the 'HERE' REST APIs
Description: Interface to the 'HERE' REST APIs <https://developer.here.com/develop/rest-apis>:
(1) geocode and autosuggest addresses or reverse geocode POIs using the 'Geocoder' API;
(2) route directions, travel distance or time matrices and isolines using the 'Routing' API;
(3) request real-time traffic flow and incident information from the 'Traffic' API;
(4) find request public transport connections and nearby stations from the 'Public Transit' API;
(5) request intermodal routes using the 'Intermodal Routing' API;
(6) get weather forecasts, reports on current weather conditions, astronomical
information and alerts at a specific location from the 'Destination Weather' API.
Locations, routes and isolines are returned as 'sf' objects.
Author: Merlin Unterfinger [aut, cre] (<https://orcid.org/0000-0003-2020-2366>),
Daniel Possenriede [ctb] (<https://orcid.org/0000-0002-6738-9845>)
Maintainer: Merlin Unterfinger <info@munterfinger.ch>
Diff between hereR versions 0.5.0 dated 2020-09-18 and 0.5.1 dated 2020-10-20
DESCRIPTION | 6 - MD5 | 22 +-- NEWS.md | 24 ++-- R/sysdata.rda |binary R/utils.R | 2 inst/doc/authentication.html | 71 ++++++++++++ inst/doc/geocoder.html | 77 ++++++++++++- inst/doc/intermodal.html | 129 +++++++++++++++++----- inst/doc/routing.html | 175 +++++++++++++++++++++--------- inst/doc/traffic.html | 71 ++++++++++++ inst/doc/transit.html | 147 +++++++++++++++++++------ inst/doc/weather.html | 245 +++++++++++++++++++++++++++---------------- 12 files changed, 735 insertions(+), 234 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-05-22 0.1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-06-18 1.9.9
2020-04-07 1.9.7