Title: Download Map Data from GISCO API - Eurostat
Description: Tools to download data from the GISCO
(Geographic Information System of the Commission) Eurostat database
<https://ec.europa.eu/eurostat/web/gisco>. Global and European map data available.
This package is in no way officially related to or endorsed by Eurostat.
Author: Diego Hernangómez [aut, cre, cph]
(<https://orcid.org/0000-0001-8457-4658>),
EuroGraphics [cph] (for the administrative boundaries.),
Vincent Arel-Bundock [cph] (<https://orcid.org/0000-0003-2042-7063>,
for the gisco_countrycode dataset.)
Maintainer: Diego Hernangómez <diego.hernangomezherrero@gmail.com>
Diff between giscoR versions 0.1.1 dated 2020-10-28 and 0.2.0 dated 2020-11-12
giscoR-0.1.1/giscoR/R/data.R |only giscoR-0.1.1/giscoR/R/gisco_get_coastallines.R |only giscoR-0.1.1/giscoR/R/gisco_get_communes.R |only giscoR-0.1.1/giscoR/R/gisco_get_countries.R |only giscoR-0.1.1/giscoR/R/gisco_get_lau.R |only giscoR-0.1.1/giscoR/R/gisco_get_nuts.R |only giscoR-0.1.1/giscoR/R/gisco_get_urban_audit.R |only giscoR-0.1.1/giscoR/R/utils.R |only giscoR-0.1.1/giscoR/man/figures/README-example-3.png |only giscoR-0.1.1/giscoR/man/figures/README-example-4.png |only giscoR-0.1.1/giscoR/man/figures/README-example-5.png |only giscoR-0.1.1/giscoR/man/gisco_get_coastallines.Rd |only giscoR-0.1.1/giscoR/man/gisco_get_communes.Rd |only giscoR-0.1.1/giscoR/man/gisco_get_countries.Rd |only giscoR-0.1.1/giscoR/man/gisco_get_lau.Rd |only giscoR-0.1.1/giscoR/man/gisco_get_nuts.Rd |only giscoR-0.1.1/giscoR/man/gisco_get_urban_audit.Rd |only giscoR-0.2.0/giscoR/DESCRIPTION | 39 giscoR-0.2.0/giscoR/MD5 | 107 giscoR-0.2.0/giscoR/NAMESPACE | 30 giscoR-0.2.0/giscoR/NEWS.md | 40 giscoR-0.2.0/giscoR/R/giscoR-package.R | 116 - giscoR-0.2.0/giscoR/R/gisco_bulk_download.R |only giscoR-0.2.0/giscoR/R/gisco_data.R |only giscoR-0.2.0/giscoR/R/gisco_get.R |only giscoR-0.2.0/giscoR/R/gisco_get_airports.R |only giscoR-0.2.0/giscoR/R/gisco_get_grid.R |only giscoR-0.2.0/giscoR/R/gisco_get_healthcare.R |only giscoR-0.2.0/giscoR/R/gisco_get_units.R |only giscoR-0.2.0/giscoR/R/sysdata.rda |binary giscoR-0.2.0/giscoR/R/utils_downloads.R |only giscoR-0.2.0/giscoR/R/utils_names.R |only giscoR-0.2.0/giscoR/README.md | 408 +-- giscoR-0.2.0/giscoR/build/vignette.rds |binary giscoR-0.2.0/giscoR/data/gisco_coastallines.rda |binary giscoR-0.2.0/giscoR/data/gisco_countries.rda |binary giscoR-0.2.0/giscoR/data/gisco_countrycode.rda |binary giscoR-0.2.0/giscoR/data/gisco_db.rda |only giscoR-0.2.0/giscoR/data/gisco_nuts.rda |binary giscoR-0.2.0/giscoR/data/tgs00026.rda |binary giscoR-0.2.0/giscoR/inst/CITATION | 28 giscoR-0.2.0/giscoR/inst/doc/giscoR.R | 307 +- giscoR-0.2.0/giscoR/inst/doc/giscoR.Rmd | 451 +-- giscoR-0.2.0/giscoR/inst/doc/giscoR.html | 1147 +++++----- giscoR-0.2.0/giscoR/inst/tinytest/test_download.R |only giscoR-0.2.0/giscoR/inst/tinytest/test_gisco_bulk_download.R |only giscoR-0.2.0/giscoR/inst/tinytest/test_gisco_get_airports.R |only giscoR-0.2.0/giscoR/inst/tinytest/test_gisco_get_coastallines.R | 70 giscoR-0.2.0/giscoR/inst/tinytest/test_gisco_get_communes.R | 25 giscoR-0.2.0/giscoR/inst/tinytest/test_gisco_get_countries.R | 107 giscoR-0.2.0/giscoR/inst/tinytest/test_gisco_get_grid.R |only giscoR-0.2.0/giscoR/inst/tinytest/test_gisco_get_healthcare.R |only giscoR-0.2.0/giscoR/inst/tinytest/test_gisco_get_lau.R | 12 giscoR-0.2.0/giscoR/inst/tinytest/test_gisco_get_nuts.R | 99 giscoR-0.2.0/giscoR/inst/tinytest/test_gisco_get_units.R |only giscoR-0.2.0/giscoR/inst/tinytest/test_gisco_get_urban_audit.R | 102 giscoR-0.2.0/giscoR/man/figures/README-example-1.png |binary giscoR-0.2.0/giscoR/man/figures/README-example-2.png |binary giscoR-0.2.0/giscoR/man/giscoR-package.Rd | 136 - giscoR-0.2.0/giscoR/man/gisco_attributions.Rd | 110 giscoR-0.2.0/giscoR/man/gisco_bulk_download.Rd |only giscoR-0.2.0/giscoR/man/gisco_check_access.Rd |only giscoR-0.2.0/giscoR/man/gisco_coastallines.Rd | 88 giscoR-0.2.0/giscoR/man/gisco_countries.Rd | 77 giscoR-0.2.0/giscoR/man/gisco_countrycode.Rd | 67 giscoR-0.2.0/giscoR/man/gisco_db.Rd |only giscoR-0.2.0/giscoR/man/gisco_get.Rd |only giscoR-0.2.0/giscoR/man/gisco_get_airports.Rd |only giscoR-0.2.0/giscoR/man/gisco_get_grid.Rd |only giscoR-0.2.0/giscoR/man/gisco_get_healthcare.Rd |only giscoR-0.2.0/giscoR/man/gisco_get_units.Rd |only giscoR-0.2.0/giscoR/man/gisco_nuts.Rd | 94 giscoR-0.2.0/giscoR/man/tgs00026.Rd | 52 giscoR-0.2.0/giscoR/tests/tinytest.R | 10 giscoR-0.2.0/giscoR/vignettes/giscoR.Rmd | 451 +-- 75 files changed, 2089 insertions(+), 2084 deletions(-)
Title: Bayesian Exponential Random Graph Models
Description: Bayesian analysis for exponential random graph models using advanced computational algorithms. More information can be found at: <https://acaimo.github.io/Bergm>.
Author: Alberto Caimo [aut, cre],
Lampros Bouranis [aut],
Robert Krause [aut]
Nial Friel [ctb]
Maintainer: Alberto Caimo <acaimo.stats@gmail.com>
Diff between Bergm versions 5.0.1 dated 2019-11-04 and 5.0.2 dated 2020-11-12
DESCRIPTION | 15 - MD5 | 40 +-- NAMESPACE | 2 R/Bergm-package.R | 1 R/bergm.R | 177 +++++++-------- R/bergmC.R | 568 ++++++++++++++++++++++++------------------------ R/bergmM.R | 301 ++++++++++++------------- R/bgof.R | 4 R/ergmAPL.R | 28 ++ R/evidence.R |only R/evidenceCJ.R | 523 ++++++++++++++++++++++---------------------- R/evidencePP.R | 637 +++++++++++++++++++++++++++--------------------------- inst/CITATION | 7 man/bergm.Rd | 24 +- man/bergmC.Rd | 25 +- man/bergmM.Rd | 29 ++ man/bgof.Rd | 17 + man/ergmAPL.Rd | 14 + man/evidence.Rd |only man/evidenceCJ.Rd | 25 +- man/evidencePP.Rd | 24 +- man/lazega.Rd | 4 22 files changed, 1311 insertions(+), 1154 deletions(-)
Title: Safely Access the RStudio API
Description: Access the RStudio API (if available) and provide informative error
messages when it's not.
Author: Kevin Ushey [aut, cre],
JJ Allaire [aut],
Hadley Wickham [aut],
Gary Ritchie [aut],
RStudio [cph]
Maintainer: Kevin Ushey <kevin@rstudio.com>
Diff between rstudioapi versions 0.12 dated 2020-11-10 and 0.13 dated 2020-11-12
DESCRIPTION | 6 +-- MD5 | 24 ++++++------ NEWS.md | 4 ++ R/document-api.R | 41 ++++++++++++++++++++- R/stubs.R | 8 +--- inst/doc/dialogs.html | 42 ++++++++++----------- inst/doc/document-manipulation.html | 62 +++++++++++++++---------------- inst/doc/projects.html | 16 ++++---- inst/doc/r-session.html | 18 ++++----- inst/doc/terminal.html | 70 ++++++++++++++++++------------------ inst/doc/visual-mode.html | 14 +++---- man/rstudio-documents.Rd | 4 +- man/viewer.Rd | 8 +--- 13 files changed, 177 insertions(+), 140 deletions(-)
Title: The Symmetric Group: Permutations of a Finite Set
Description: Manipulates invertible functions from a finite set to itself. Can transform from word form to cycle form and back.
Author: Robin K. S. Hankin [aut, cre] (<https://orcid.org/0000-0001-5982-0415>),
Paul Egeler [ctb] (<https://orcid.org/0000-0001-6948-9498>)
Maintainer: Robin K. S. Hankin <hankin.robin@gmail.com>
Diff between permutations versions 1.0-6 dated 2020-02-07 and 1.0-9 dated 2020-11-12
DESCRIPTION | 16 ++++++++++------ MD5 | 33 +++++++++++++++++---------------- NAMESPACE | 1 - README.md | 7 +++---- build/partial.rdb |binary build/vignette.rds |binary data/megaminx.rda |binary inst/CITATION |only inst/code.R | 29 +++++++++++++++++------------ inst/data.txt | 4 ++-- inst/doc/permutations.pdf |binary inst/megaminx.R | 6 +++++- inst/megaminx.py | 24 ++++++++++++------------ inst/representation.Rmd | 10 +++++----- man/fbin.Rd | 2 +- man/id.Rd | 2 +- man/megaminx.Rd | 3 ++- vignettes/permutations.bib | 6 +++--- 18 files changed, 78 insertions(+), 65 deletions(-)
Title: AUC Estimation of Interval Censored Survival Data
Description: The kernel of this 'Rcpp' based package is an efficient implementation of the generalized gradient projection method for spline function based constrained maximum likelihood estimator for interval censored survival data (Wu, Yuan; Zhang, Ying. Partially monotone tensor spline estimation of the joint distribution function with bivariate current status data. Ann. Statist. 40, 2012, 1609-1636 <doi:10.1214/12-AOS1016>). The key function computes the density function of the joint distribution of event time and the marker and returns the receiver operating characteristic (ROC) curve for the interval censored survival data as well as area under the curve (AUC).
Author: Jiaxing Lin, Yuan Wu, Xiaofei Wang, Kouros Owzar.
Maintainer: Alexander Sibley <dcibioinformatics@duke.edu>
Diff between intcensROC versions 0.1 dated 2018-05-02 and 0.1.2 dated 2020-11-12
DESCRIPTION | 15 +++++++-------- MD5 | 25 +++++++++++++------------ NEWS |only build/vignette.rds |binary inst/doc/intcensROC.R | 6 ++++-- inst/doc/intcensROC.Rnw | 4 +++- inst/doc/intcensROC.pdf |binary man/intcensROC-package.Rd | 4 ++-- src/sieve.cpp | 2 +- src/step1.h | 16 +++++++++++----- src/step2.h | 16 +++++++++------- src/step3.h | 18 ++++++------------ src/step4.h | 11 ++++++++--- vignettes/intcensROC.Rnw | 4 +++- 14 files changed, 67 insertions(+), 54 deletions(-)
Title: Efficient Estimation of Grouped Survival Models
Description: These 'Rcpp'-based functions compute the efficient score statistics for grouped time-to-event data (Prentice and Gloeckler, 1978), with the optional inclusion of baseline covariates. Functions for estimating the parameter of interest and nuisance parameters, including baseline hazards, using maximum likelihood are also provided. A parallel set of functions allow for the incorporation of family structure of related individuals (e.g., trios). Note that the current implementation of the frailty model (Ripatti and Palmgren, 2000) is sensitive to departures from model assumptions, and should be considered experimental. For these data, the exact proportional-hazards-model-based likelihood is computed by evaluating multiple variable integration. The integration is accomplished using the 'Cuba' library (Hahn, 2005), and the source files are included in this package. The maximization process is carried out using Brent's algorithm, with the C++ code file from John Burkardt and John Denker (Brent, 2002).
Author: Jiaxing Lin [aut],
Alexander Sibley [aut],
Tracy Truong [aut],
Kouros Owzar [aut],
Zhiguo Li [aut],
Yu Jiang [ctb],
Janice McCarthy [ctb],
Andrew Allen [ctb]
Maintainer: Alexander Sibley <dcibioinformatics@duke.edu>
Diff between groupedSurv versions 1.0.4.1 dated 2020-02-02 and 1.0.4.2 dated 2020-11-12
DESCRIPTION | 13 ++++++------- MD5 | 16 ++++++++-------- NEWS | 7 +++++++ build/vignette.rds |binary inst/doc/groupedSurv.R | 6 ++++-- inst/doc/groupedSurv.Rnw | 8 +++++--- inst/doc/groupedSurv.pdf |binary man/groupedSurv-package.Rd | 6 +++--- vignettes/groupedSurv.Rnw | 8 +++++--- 9 files changed, 38 insertions(+), 26 deletions(-)
Title: Bayesian Inference of Non-Gaussian State Space Models
Description: Efficient methods for Bayesian inference of state space models
via particle Markov chain Monte Carlo (MCMC) and MCMC based on parallel
importance sampling type weighted estimators
(Vihola, Helske, and Franks, 2020, <doi:10.1111/sjos.12492>).
Gaussian, Poisson, binomial, negative binomial, and Gamma
observation densities and basic stochastic volatility models with Gaussian state
dynamics, as well as general non-linear Gaussian models and discretised
diffusion models are supported.
Author: Jouni Helske [aut, cre] (<https://orcid.org/0000-0001-7130-793X>),
Matti Vihola [aut] (<https://orcid.org/0000-0002-8041-7222>)
Maintainer: Jouni Helske <jouni.helske@iki.fi>
Diff between bssm versions 1.0.0 dated 2020-06-09 and 1.0.1-1 dated 2020-11-12
DESCRIPTION | 14 - MD5 | 125 ++++++------ NAMESPACE | 1 NEWS | 16 + R/RcppExports.R | 12 + R/as.data.frame.mcmc_output.R | 4 R/as_bssm.R | 12 - R/bootstrap_filter.R | 4 R/bssm-package.R | 8 R/models.R | 240 +++++++++++++++++++---- R/particle_smoother.R | 54 ++++- R/predict.R | 284 +++++++++++++++++++++------ R/print_mcmc.R | 20 - R/run_mcmc.R | 124 ++++++++---- build/vignette.rds |binary inst/CITATION | 8 inst/doc/bssm.Rmd | 8 inst/doc/bssm.html | 51 ++-- inst/doc/growth_model.R | 4 inst/doc/growth_model.Rmd | 6 inst/doc/growth_model.html | 22 +- inst/doc/psi_pf.R | 287 +++++++++++++++++++++++++++ inst/doc/psi_pf.Rmd | 357 +++++++++++++++++++++++++++++++++- inst/doc/psi_pf.html | 403 +++++++++++++++++++++++++++++++++++++-- man/as.data.frame.mcmc_output.Rd | 4 man/as_bssm.Rd | 8 man/bootstrap_filter.Rd | 4 man/bssm.Rd | 6 man/drownings.Rd | 2 man/particle_smoother.Rd | 50 ++++ man/predict.Rd | 68 +++++- man/run_mcmc.Rd | 10 man/run_mcmc.ssm_nlg.Rd | 14 - man/run_mcmc.ssm_sde.Rd | 10 man/run_mcmc_g.Rd | 10 man/run_mcmc_ng.Rd | 73 ++++++- man/ssm_mlg.Rd | 28 ++ man/ssm_mng.Rd | 21 +- man/ssm_nlg.Rd | 4 man/ssm_ulg.Rd | 148 +++++++++++++- man/ssm_ung.Rd | 37 ++- src/Makevars | 2 src/Makevars.win | 2 src/R_bootstrap_filter.cpp | 333 ++++++++++++++++++-------------- src/R_predict_past.cpp |only src/R_psi.cpp | 27 ++ src/RcppExports.cpp | 66 ++++++ src/model_ssm_mlg.cpp | 125 ++++++++---- src/model_ssm_mlg.h | 10 src/model_ssm_mng.cpp | 70 ++++++ src/model_ssm_mng.h | 5 src/model_ssm_nlg.cpp | 31 +++ src/model_ssm_nlg.h | 3 src/model_ssm_ulg.cpp | 76 +++++-- src/model_ssm_ulg.h | 7 src/model_ssm_ung.cpp | 85 ++++++++ src/model_ssm_ung.h | 5 vignettes/bssm.Rmd | 8 vignettes/bssm.bib | 240 +++++++++++------------ vignettes/growth_model.Rmd | 6 vignettes/psi_pf.Rmd | 357 +++++++++++++++++++++++++++++++++- vignettes/psi_pf_experiments |only 62 files changed, 3285 insertions(+), 734 deletions(-)
Title: 'HTMLwidgets' Displaying Some 'WebGL' Shaders
Description: Creates some 'WebGL' shaders. They can be used as the background of a 'Shiny' app. They also can be visualized in the 'RStudio' viewer pane or included in 'Rmd' documents, but this is pretty useless, besides contemplating them.
Author: Stéphane Laurent [aut, cre],
Scott Boyle [ctb, cph] ('Hamster.js' library),
Mathew Groves [ctb, cph] ('PixiJS' library),
Chad Engler [ctb, cph] ('PixiJS' library)
Maintainer: Stéphane Laurent <laurent_step@outlook.fr>
Diff between thorn versions 0.1.0 dated 2020-10-22 and 0.2.0 dated 2020-11-12
DESCRIPTION | 6 MD5 | 14 - NEWS.md | 4 R/thorn.R | 15 +- README.md | 27 +++ inst/htmlwidgets/thorn.js | 338 +++++++++++++++++++++++++++++++++++++++++++--- man/thorn-shiny.Rd | 4 man/thorn.Rd | 6 8 files changed, 379 insertions(+), 35 deletions(-)
Title: A Wrapper of the JavaScript Library 'vis-graph3d'
Description: Create interactive visualization charts to draw data in three dimensional graphs. The graphs can be included in Shiny apps and R markdown documents, or viewed from the R console and 'RStudio' Viewer. Based on the 'vis.js' Graph3d module and the 'htmlwidgets' R package.
Author: Stéphane Laurent [aut, cre] (R interface),
B. V. Almende [aut, cph] (vis.js library),
vis.js contributors [aut, cph]
Maintainer: Stéphane Laurent <laurent_step@outlook.fr>
Diff between graph3d versions 0.1.0 dated 2020-08-12 and 0.2.0 dated 2020-11-12
graph3d-0.1.0/graph3d/LICENSE |only graph3d-0.2.0/graph3d/DESCRIPTION | 10 +++++----- graph3d-0.2.0/graph3d/LICENSE.note |only graph3d-0.2.0/graph3d/MD5 | 10 +++++----- graph3d-0.2.0/graph3d/NEWS.md | 5 +++++ graph3d-0.2.0/graph3d/R/graph3d.R | 4 +++- graph3d-0.2.0/graph3d/man/graph3d.Rd | 3 +++ 7 files changed, 21 insertions(+), 11 deletions(-)
Title: Extra 'Recipes' for Text Processing
Description: Converting text to numerical features requires
specifically created procedures, which are implemented as steps
according to the 'recipes' package. These steps allows for
tokenization, filtering, counting (tf and tfidf) and feature hashing.
Author: Emil Hvitfeldt [aut, cre] (<https://orcid.org/0000-0002-0679-1945>)
Maintainer: Emil Hvitfeldt <emilhhvitfeldt@gmail.com>
Diff between textrecipes versions 0.3.0 dated 2020-07-08 and 0.4.0 dated 2020-11-12
textrecipes-0.3.0/textrecipes/man/tunable.step_ngram.Rd |only textrecipes-0.4.0/textrecipes/DESCRIPTION | 19 textrecipes-0.4.0/textrecipes/MD5 | 161 ++-- textrecipes-0.4.0/textrecipes/NAMESPACE | 38 - textrecipes-0.4.0/textrecipes/NEWS.md | 13 textrecipes-0.4.0/textrecipes/R/0_imports.R | 94 -- textrecipes-0.4.0/textrecipes/R/RcppExports.R | 1 textrecipes-0.4.0/textrecipes/R/aaa.R | 28 textrecipes-0.4.0/textrecipes/R/clean_levels.R |only textrecipes-0.4.0/textrecipes/R/clean_names.R |only textrecipes-0.4.0/textrecipes/R/embeddings.R | 111 +- textrecipes-0.4.0/textrecipes/R/hashing.R | 138 ++- textrecipes-0.4.0/textrecipes/R/lda.R | 89 +- textrecipes-0.4.0/textrecipes/R/lemma.R | 61 - textrecipes-0.4.0/textrecipes/R/ngram.R | 83 +- textrecipes-0.4.0/textrecipes/R/pos_filter.R | 63 - textrecipes-0.4.0/textrecipes/R/reexports.R |only textrecipes-0.4.0/textrecipes/R/sequence_onehot.R | 188 +++- textrecipes-0.4.0/textrecipes/R/stem.R | 79 +- textrecipes-0.4.0/textrecipes/R/stopwords.R | 109 +- textrecipes-0.4.0/textrecipes/R/text_normalization.R | 99 +- textrecipes-0.4.0/textrecipes/R/textfeature.R | 119 +-- textrecipes-0.4.0/textrecipes/R/tf.R | 126 ++- textrecipes-0.4.0/textrecipes/R/tfidf.R | 94 +- textrecipes-0.4.0/textrecipes/R/tokenfilter.R | 112 +- textrecipes-0.4.0/textrecipes/R/tokenize.R | 249 ++++-- textrecipes-0.4.0/textrecipes/R/tokenizer-spacyr.R | 9 textrecipes-0.4.0/textrecipes/R/tokenizer-tokenizersbpe.R |only textrecipes-0.4.0/textrecipes/R/tokenizer-udpipe.R |only textrecipes-0.4.0/textrecipes/R/tokenlist.R | 136 +-- textrecipes-0.4.0/textrecipes/R/tokenmerge.R | 30 textrecipes-0.4.0/textrecipes/R/untokenize.R | 36 textrecipes-0.4.0/textrecipes/README.md | 24 textrecipes-0.4.0/textrecipes/build/vignette.rds |binary textrecipes-0.4.0/textrecipes/inst/doc/Working-with-n-grams.Rmd | 2 textrecipes-0.4.0/textrecipes/inst/doc/Working-with-n-grams.html | 90 ++ textrecipes-0.4.0/textrecipes/inst/doc/cookbook---using-more-complex-recipes-involving-text.html | 94 ++ textrecipes-0.4.0/textrecipes/inst/doc/tokenlist.Rmd | 2 textrecipes-0.4.0/textrecipes/inst/doc/tokenlist.html | 90 ++ textrecipes-0.4.0/textrecipes/man/rcpp_ngram.Rd | 1 textrecipes-0.4.0/textrecipes/man/reexports.Rd |only textrecipes-0.4.0/textrecipes/man/required_pkgs.step.Rd |only textrecipes-0.4.0/textrecipes/man/step_clean_levels.Rd |only textrecipes-0.4.0/textrecipes/man/step_clean_names.Rd |only textrecipes-0.4.0/textrecipes/man/step_lda.Rd | 9 textrecipes-0.4.0/textrecipes/man/step_lemma.Rd | 14 textrecipes-0.4.0/textrecipes/man/step_ngram.Rd | 15 textrecipes-0.4.0/textrecipes/man/step_pos_filter.Rd | 14 textrecipes-0.4.0/textrecipes/man/step_sequence_onehot.Rd | 40 - textrecipes-0.4.0/textrecipes/man/step_stem.Rd | 30 textrecipes-0.4.0/textrecipes/man/step_stopwords.Rd | 36 textrecipes-0.4.0/textrecipes/man/step_text_normalization.Rd | 36 textrecipes-0.4.0/textrecipes/man/step_textfeature.Rd | 55 - textrecipes-0.4.0/textrecipes/man/step_texthash.Rd | 28 textrecipes-0.4.0/textrecipes/man/step_tf.Rd | 6 textrecipes-0.4.0/textrecipes/man/step_tfidf.Rd | 6 textrecipes-0.4.0/textrecipes/man/step_tokenfilter.Rd | 12 textrecipes-0.4.0/textrecipes/man/step_tokenize.Rd | 20 textrecipes-0.4.0/textrecipes/man/step_tokenmerge.Rd | 11 textrecipes-0.4.0/textrecipes/man/step_untokenize.Rd | 6 textrecipes-0.4.0/textrecipes/man/step_word_embeddings.Rd | 2 textrecipes-0.4.0/textrecipes/man/tunable.step.Rd |only textrecipes-0.4.0/textrecipes/src/ngram.cpp | 1 textrecipes-0.4.0/textrecipes/tests/testthat/helper-functions.R | 4 textrecipes-0.4.0/textrecipes/tests/testthat/test-clean_levels.R |only textrecipes-0.4.0/textrecipes/tests/testthat/test-clean_names.R |only textrecipes-0.4.0/textrecipes/tests/testthat/test-embeddings.R | 265 +++---- textrecipes-0.4.0/textrecipes/tests/testthat/test-hashing.R | 36 textrecipes-0.4.0/textrecipes/tests/testthat/test-lda.R | 19 textrecipes-0.4.0/textrecipes/tests/testthat/test-lemma.R | 44 - textrecipes-0.4.0/textrecipes/tests/testthat/test-ngram.R | 214 +++-- textrecipes-0.4.0/textrecipes/tests/testthat/test-pos_filter.R | 86 +- textrecipes-0.4.0/textrecipes/tests/testthat/test-s3-methods.R |only textrecipes-0.4.0/textrecipes/tests/testthat/test-sequence_onehot.R | 137 ++- textrecipes-0.4.0/textrecipes/tests/testthat/test-stem.R | 58 - textrecipes-0.4.0/textrecipes/tests/testthat/test-stopwords.R | 51 - textrecipes-0.4.0/textrecipes/tests/testthat/test-text_normalization.R | 15 textrecipes-0.4.0/textrecipes/tests/testthat/test-textfeature.R | 56 - textrecipes-0.4.0/textrecipes/tests/testthat/test-tf.R | 137 +-- textrecipes-0.4.0/textrecipes/tests/testthat/test-tfidf.R | 72 - textrecipes-0.4.0/textrecipes/tests/testthat/test-tokenfilter.R | 78 +- textrecipes-0.4.0/textrecipes/tests/testthat/test-tokenize.R | 78 +- textrecipes-0.4.0/textrecipes/tests/testthat/test-tokenizer-spacyr.R | 35 textrecipes-0.4.0/textrecipes/tests/testthat/test-tokenizer-tokenizersbpe.R |only textrecipes-0.4.0/textrecipes/tests/testthat/test-tokenlist.R | 377 +++++----- textrecipes-0.4.0/textrecipes/tests/testthat/test-tokenmerge.R | 44 - textrecipes-0.4.0/textrecipes/tests/testthat/test-untokenize.R | 47 - textrecipes-0.4.0/textrecipes/vignettes/Working-with-n-grams.Rmd | 2 textrecipes-0.4.0/textrecipes/vignettes/tokenlist.Rmd | 2 89 files changed, 2841 insertions(+), 1945 deletions(-)
Title: Information Matrices for 'lmeStruct' and 'glsStruct' Objects
Description: Provides analytic derivatives and information matrices for
fitted linear mixed effects (lme) models and generalized least squares (gls) models
estimated using lme() (from package 'nlme') and gls() (from package 'nlme'), respectively.
The package includes functions for estimating the sampling variance-covariance of variance
component parameters using the inverse Fisher information. The variance components include
the parameters of the random effects structure (for lme models), the variance structure,
and the correlation structure. The expected and average forms of the Fisher information matrix
are used in the calculations, and models estimated by full maximum likelihood or
restricted maximum likelihood are supported. The package also includes a function for estimating
standardized mean difference effect sizes (Pustejovsky, Hedges, and Shadish (2014) <DOI:10.3102/1076998614547577>)
based on fitted lme or gls models.
Author: James Pustejovsky [aut] (<https://orcid.org/0000-0003-0591-9465>),
Man Chen [aut, cre]
Maintainer: Man Chen <manchen9005@gmail.com>
Diff between lmeInfo versions 0.1.1 dated 2020-05-10 and 0.1.2 dated 2020-11-12
lmeInfo-0.1.1/lmeInfo/README.md |only lmeInfo-0.1.1/lmeInfo/tests/testthat/test-seperate-random-effects.R |only lmeInfo-0.1.2/lmeInfo/DESCRIPTION | 10 - lmeInfo-0.1.2/lmeInfo/MD5 | 45 ++-- lmeInfo-0.1.2/lmeInfo/NAMESPACE | 5 lmeInfo-0.1.2/lmeInfo/NEWS.md | 7 lmeInfo-0.1.2/lmeInfo/R/build-variance-matrices.R | 15 + lmeInfo-0.1.2/lmeInfo/R/derivatives.R | 3 lmeInfo-0.1.2/lmeInfo/R/function-checking.R | 78 +++++++- lmeInfo-0.1.2/lmeInfo/R/g_mlm.R | 13 + lmeInfo-0.1.2/lmeInfo/R/information-matrices.R | 26 ++ lmeInfo-0.1.2/lmeInfo/R/matrix-functions.R | 4 lmeInfo-0.1.2/lmeInfo/build/vignette.rds |binary lmeInfo-0.1.2/lmeInfo/inst/doc/Information-matrices-for-fitted-LME-models.R | 4 lmeInfo-0.1.2/lmeInfo/inst/doc/Information-matrices-for-fitted-LME-models.html | 94 ++++++++-- lmeInfo-0.1.2/lmeInfo/man/g_mlm.Rd | 2 lmeInfo-0.1.2/lmeInfo/tests/testthat/test-against-merDeriv.R | 9 lmeInfo-0.1.2/lmeInfo/tests/testthat/test-fixed-sigma-models.R | 5 lmeInfo-0.1.2/lmeInfo/tests/testthat/test-gls-models.R | 58 ++++-- lmeInfo-0.1.2/lmeInfo/tests/testthat/test-multivariate-models.R | 36 +++ lmeInfo-0.1.2/lmeInfo/tests/testthat/test-scdhlm-examples.R | 18 + lmeInfo-0.1.2/lmeInfo/tests/testthat/test-separate-random-effects.R |only lmeInfo-0.1.2/lmeInfo/tests/testthat/test-three-level-models.R | 27 ++ lmeInfo-0.1.2/lmeInfo/tests/testthat/test-two-level-models.R | 23 ++ lmeInfo-0.1.2/lmeInfo/tests/testthat/test-variance-structures.R | 48 +++++ 25 files changed, 421 insertions(+), 109 deletions(-)
Title: Bayesian A/B Testing
Description: Provides functions for Bayesian A/B testing including prior elicitation
options based on Kass and Vaidyanathan (1992) <doi:10.1111/j.2517-6161.1992.tb01868.x>.
Author: Quentin F. Gronau [aut, cre],
Akash Raj [ctb],
Eric-Jan Wagenmakers [ths]
Maintainer: Quentin F. Gronau <Quentin.F.Gronau@gmail.com>
Diff between abtest versions 0.2.1 dated 2020-04-23 and 0.2.2 dated 2020-11-12
DESCRIPTION | 6 +-- MD5 | 20 ++++++------ NEWS | 6 +++ R/ab_test.R | 67 +++++++++++++++++++++++++++++++++++++++--- R/ab_test_internals.R | 18 +++++++++++ R/plot_robustness.R | 2 - R/plot_sequential.R | 3 - man/ab_test.Rd | 22 ++++++++++--- man/plot_robustness.Rd | 2 - man/plot_sequential.Rd | 33 ++++++++++++++++---- tests/testthat/test-ab_test.R | 37 +++++++++++++++++++++++ 11 files changed, 183 insertions(+), 33 deletions(-)
Title: Tidy C++ Header-Only Definitions for Parts of the C API of R
Description: Core parts of the C API of R are wrapped in a C++ namespace via a set
of inline functions giving a tidier representation of the underlying data structures
and functionality using a header-only implementation without additional dependencies.
Author: Dirk Eddelbuettel
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between tidyCpp versions 0.0.1 dated 2020-10-10 and 0.0.2 dated 2020-11-12
tidyCpp-0.0.1/tidyCpp/inst/doc/motivation.R |only tidyCpp-0.0.2/tidyCpp/ChangeLog | 65 ++ tidyCpp-0.0.2/tidyCpp/DESCRIPTION | 20 tidyCpp-0.0.2/tidyCpp/MD5 | 35 - tidyCpp-0.0.2/tidyCpp/README.md |only tidyCpp-0.0.2/tidyCpp/build/partial.rdb |binary tidyCpp-0.0.2/tidyCpp/build/vignette.rds |binary tidyCpp-0.0.2/tidyCpp/inst/NEWS.Rd |only tidyCpp-0.0.2/tidyCpp/inst/doc/motivation.Rmd | 238 +++++++- tidyCpp-0.0.2/tidyCpp/inst/doc/motivation.html | 439 +++++++++++----- tidyCpp-0.0.2/tidyCpp/inst/include/tidy/internals.h | 41 + tidyCpp-0.0.2/tidyCpp/inst/include/tidy/math.h | 223 ++++---- tidyCpp-0.0.2/tidyCpp/inst/include/tidy/protect.h |only tidyCpp-0.0.2/tidyCpp/inst/include/tidy/shield.h | 60 -- tidyCpp-0.0.2/tidyCpp/inst/include/tidyCpp | 2 tidyCpp-0.0.2/tidyCpp/inst/snippets/convolveExample.cpp | 11 tidyCpp-0.0.2/tidyCpp/inst/snippets/dimnamesExample.cpp | 4 tidyCpp-0.0.2/tidyCpp/inst/snippets/protectExamples.cpp |only tidyCpp-0.0.2/tidyCpp/inst/snippets/shieldExamples.cpp | 2 tidyCpp-0.0.2/tidyCpp/man/tidyCpp-package.Rd | 12 tidyCpp-0.0.2/tidyCpp/vignettes/motivation.Rmd | 238 +++++++- 21 files changed, 978 insertions(+), 412 deletions(-)
Title: Compute, Handle and Plot Incidence of Dated Events
Description: Provides functions and classes to compute, handle and visualise
incidence from dated events for a defined time interval. Dates can be
provided in various standard formats. The class 'incidence2' is used to store
computed incidence and can be easily manipulated, subsetted, and plotted.
This package is part of the RECON (<https://www.repidemicsconsortium.org/>)
toolkit for outbreak analysis.
Author: Tim Taylor [aut, cre] (<https://orcid.org/0000-0002-8587-7113>),
Thibaut Jombart [aut],
Zhian N. Kamvar [aut] (<https://orcid.org/0000-0003-1458-7108>),
Rich FitzJohn [aut],
Jun Cai [ctb] (<https://orcid.org/0000-0001-9495-1226>),
Sangeeta Bhatia [ctb],
Jakob Schumacher [ctb],
Juliet R.C. Pulliam [ctb] (<https://orcid.org/0000-0003-3314-8223>)
Maintainer: Tim Taylor <tim.taylor@hiddenelephants.co.uk>
Diff between incidence2 versions 0.2.1 dated 2020-10-16 and 0.2.2 dated 2020-11-12
incidence2-0.2.1/incidence2/R/arg_values.R |only incidence2-0.2.1/incidence2/R/count_dates.R |only incidence2-0.2.1/incidence2/R/rlang_dotdata.R |only incidence2-0.2.1/incidence2/tests/testthat/rds |only incidence2-0.2.2/incidence2/DESCRIPTION | 13 incidence2-0.2.2/incidence2/MD5 | 83 +- incidence2-0.2.2/incidence2/NAMESPACE | 10 incidence2-0.2.2/incidence2/NEWS.md | 6 incidence2-0.2.2/incidence2/R/arg_to_values.R |only incidence2-0.2.2/incidence2/R/conversion.R | 2 incidence2-0.2.2/incidence2/R/cumulate.R | 4 incidence2-0.2.2/incidence2/R/dplyr.R | 1 incidence2-0.2.2/incidence2/R/get_interval.R | 2 incidence2-0.2.2/incidence2/R/group_dates.R | 10 incidence2-0.2.2/incidence2/R/incidence.R | 261 +++----- incidence2-0.2.2/incidence2/R/make_breaks.R | 1 incidence2-0.2.2/incidence2/R/make_incidence.R | 32 - incidence2-0.2.2/incidence2/R/palettes.R | 2 incidence2-0.2.2/incidence2/R/plot.R | 22 incidence2-0.2.2/incidence2/R/regroup.R | 6 incidence2-0.2.2/incidence2/R/valid_interval.R | 1 incidence2-0.2.2/incidence2/build/vignette.rds |binary incidence2-0.2.2/incidence2/inst/doc/Introduction.html | 101 +-- incidence2-0.2.2/incidence2/inst/doc/customizing_incidence_plots.html | 101 +-- incidence2-0.2.2/incidence2/inst/doc/handling_incidence_objects.html | 299 ++++------ incidence2-0.2.2/incidence2/man/cumulate.Rd | 3 incidence2-0.2.2/incidence2/man/incidence.Rd | 94 --- incidence2-0.2.2/incidence2/man/palettes.Rd | 3 incidence2-0.2.2/incidence2/man/regroup.Rd | 3 incidence2-0.2.2/incidence2/tests/testthat/_snaps |only incidence2-0.2.2/incidence2/tests/testthat/test-accessors.R | 2 incidence2-0.2.2/incidence2/tests/testthat/test-conversions.R | 2 incidence2-0.2.2/incidence2/tests/testthat/test-cumulate.R | 3 incidence2-0.2.2/incidence2/tests/testthat/test-dplyr.R | 1 incidence2-0.2.2/incidence2/tests/testthat/test-incidence.R | 68 +- incidence2-0.2.2/incidence2/tests/testthat/test-non-exported.R | 12 incidence2-0.2.2/incidence2/tests/testthat/test-palettes.R | 2 incidence2-0.2.2/incidence2/tests/testthat/test-regroup.R | 3 incidence2-0.2.2/incidence2/tests/testthat/test-standards.R | 2 39 files changed, 439 insertions(+), 716 deletions(-)
Title: Powell Miscellaneous Functions for Teaching and Learning
Statistics
Description: Miscellaneous functions useful for teaching statistics as well as actually practicing the art. They typically are not new methods but rather wrappers around either base R or other packages.
Author: Chuck Powell [aut, cre] (<https://orcid.org/0000-0002-3606-2188>)
Maintainer: Chuck Powell <ibecav@gmail.com>
Diff between CGPfunctions versions 0.6.2 dated 2020-07-16 and 0.6.3 dated 2020-11-12
DESCRIPTION | 14 MD5 | 47 +-- NAMESPACE | 8 NEWS.md | 12 R/Plot2WayANOVA.R | 207 ++++++++----- R/aovtype2.R |only R/aovtype2_helpers.R |only R/chaid_table.R | 2 R/global_vars.R | 18 + R/helpers.R | 112 +++++++ R/newggslopegraph.R | 120 ++++--- README.md | 4 build/vignette.rds |binary inst/doc/Using-Plot2WayANOVA.html | 564 ++++++++++++++++++++---------------- inst/doc/Using-PlotXTabs.html | 166 ++++++---- inst/doc/Using-PlotXTabs2.html | 226 ++++++++------ inst/doc/Using-chaid_table.Rmd | 4 inst/doc/Using-chaid_table.html | 262 ++++++++++------ inst/doc/Using-newggslopegraph.html | 328 ++++++++++++-------- man/BrownForsytheTest.Rd |only man/Plot2WayANOVA.Rd | 11 man/aovtype2.Rd |only man/exponent.Rd | 1 man/newbroom.Rd |only man/newggslopegraph.Rd | 6 man/number_to_word.Rd | 1 vignettes/Using-chaid_table.Rmd | 4 27 files changed, 1317 insertions(+), 800 deletions(-)
Title: Generalized Fiducial Inference for Normal Linear Mixed Models
Description: Simulation of the generalized fiducial distribution for normal linear mixed models with interval data. Fiducial inference is somehow similar to Bayesian inference, in the sense that it is based on a distribution that represents the uncertainty about the parameters, like the posterior distribution in Bayesian statistics. It does not require a prior distribution, and it yields results close to frequentist results. Reference: Cisewski and Hannig (2012) <doi:10.1214/12-AOS1030>.
Author: Stéphane Laurent [aut, cre],
Jessi Cisewski [aut, ctb] (author of the original Matlab code,
<https://orcid.org/0000-0002-9656-2272>)
Maintainer: Stéphane Laurent <laurent_step@outlook.fr>
Diff between gfilmm versions 0.1.0 dated 2020-11-05 and 1.0.0 dated 2020-11-12
DESCRIPTION | 14 MD5 | 44 NAMESPACE | 3 NEWS.md | 10 R/RcppExports.R | 12 R/gfilmm.R | 37 R/internal.R | 15 R/predictive.R | 16 inst/doc/the-gfilmm-package.R | 72 + inst/doc/the-gfilmm-package.Rmd | 183 +++ inst/doc/the-gfilmm-package.html | 276 ++++- man/gfilmm.Rd | 17 man/gfilmmPredictive.Rd | 14 src/Makevars | 4 src/Makevars.win | 2 src/RcppExports.cpp | 67 + src/gfilmm.cpp | 1601 +++++++++++++++++++--------------- tests/testthat/test-getCovariates.R | 20 vignettes/intervals_between_3x2.png |only vignettes/intervals_between_6x3.png |only vignettes/intervals_grandMean_3x2.png |only vignettes/intervals_grandMean_6x3.png |only vignettes/intervals_within_3x2.png |only vignettes/intervals_within_6x3.png |only vignettes/the-gfilmm-package.Rmd | 183 +++ vignettes/vignette.css | 42 26 files changed, 1777 insertions(+), 855 deletions(-)
Title: Bindings to the 'HarfBuzz' and 'Fribidi' Libraries for Text
Shaping
Description: Provides access to the text shaping functionality in the 'HarfBuzz'
library and the bidirectional algorithm in the 'Fribidi' library.
'textshaping' is a low-level utility package mainly for graphic devices that
expands upon the font tool-set provided by the 'systemfonts' package.
Author: Thomas Lin Pedersen [cre, aut]
(<https://orcid.org/0000-0002-5147-4711>),
RStudio [cph]
Maintainer: Thomas Lin Pedersen <thomas.pedersen@rstudio.com>
Diff between textshaping versions 0.1.2 dated 2020-10-08 and 0.2.0 dated 2020-11-12
DESCRIPTION | 9 +-- MD5 | 36 ++++++------- NEWS.md | 5 + R/shape_text.R | 1 README.md | 2 configure | 57 ++++++++++++---------- inst/doc/c_interface.Rmd | 33 ++++++------ inst/doc/c_interface.html | 21 +++----- inst/include/textshaping.h | 37 +++++++++++++- src/face_feature.cpp | 16 ++++++ src/hb_shaper.cpp | 14 +++++ src/hb_shaper.h | 2 src/string_bidi.cpp | 12 ++++ src/string_bidi.h | 1 src/string_metrics.cpp | 116 +++++++++++++++++++++++++++++++++++++++++---- src/string_metrics.h | 18 +++++- src/string_shape.cpp | 4 + src/string_shape.h | 4 + vignettes/c_interface.Rmd | 33 ++++++------ 19 files changed, 312 insertions(+), 109 deletions(-)
Title: Interval Mapping for Quantitative Trait Loci Underlying Neighbor
Effects
Description: To enable quantitative trait loci mapping of neighbor effects, this package extends a single-marker regression to interval mapping. The theoretical background of the method is described in Sato et al. (2020) <doi:10.1101/2020.05.20.089474>.
Author: Yasuhiro Sato [aut, cre] (<https://orcid.org/0000-0002-6466-723X>),
Kazuya Takeda [aut],
Atsushi J. Nagano [aut] (<https://orcid.org/0000-0001-7891-5049>)
Maintainer: Yasuhiro Sato <sato.yasuhiro.36c@kyoto-u.jp>
Diff between rNeighborQTL versions 1.1.0 dated 2020-07-28 and 1.1.1 dated 2020-11-12
DESCRIPTION | 6 +- MD5 | 24 ++++----- R/calc_pve.R | 70 +++++++++++++++++--------- R/plot_eff.R | 73 ++++++++++++++++----------- R/plot_nei.R | 109 +++++++++++++++++++++++------------------ R/rNeighborQTL-package.R | 51 ++++++++++--------- inst/doc/rNeighborQTL.R | 16 +++--- inst/doc/rNeighborQTL.Rmd | 16 +++--- inst/doc/rNeighborQTL.html | 32 ++++++------ man/calc_pve.Rd | 7 +- man/rNeighborQTL-package.Rd | 4 + tests/testthat/test-calc_pve.R | 20 +++---- vignettes/rNeighborQTL.Rmd | 16 +++--- 13 files changed, 252 insertions(+), 192 deletions(-)
Title: Simple Git Client for R
Description: Simple git client for R based on 'libgit2' with support for SSH and
HTTPS remotes. All functions in 'gert' use basic R data types (such as vectors
and data-frames) for their arguments and return values. User credentials are
shared with command line 'git' through the git-credential store and ssh keys
stored on disk or ssh-agent. On Linux, a somewhat recent version of 'libgit2'
is required; we provide a 'PPA' for older Ubuntu 'LTS' versions.
Author: Jeroen Ooms [aut, cre] (<https://orcid.org/0000-0002-4035-0289>),
Jennifer Bryan [ctb] (<https://orcid.org/0000-0002-6983-2759>)
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>
Diff between gert versions 1.0.1 dated 2020-10-14 and 1.0.2 dated 2020-11-12
DESCRIPTION | 6 +- MD5 | 52 +++++++++++------------ NEWS | 7 ++- R/branch.R | 8 ++- R/merge.R | 2 R/open.R | 4 + build/vignette.rds |binary configure | 14 +++--- inst/doc/gert.html | 111 ++++++++++++++++++++------------------------------- man/git_archive.Rd | 4 + man/git_branch.Rd | 11 +++-- man/git_commit.Rd | 4 + man/git_config.Rd | 4 + man/git_diff.Rd | 4 + man/git_fetch.Rd | 4 + man/git_merge.Rd | 4 + man/git_open.Rd | 4 + man/git_rebase.Rd | 4 + man/git_remote.Rd | 4 + man/git_repo.Rd | 4 + man/git_signature.Rd | 4 + man/git_stash.Rd | 4 + man/git_tag.Rd | 4 + man/github.Rd | 4 + src/Makevars.win | 2 src/branch.c | 16 +++++-- src/init.c | 4 - 27 files changed, 158 insertions(+), 135 deletions(-)
Title: A 'Teradata' Backend for 'dplyr'
Description: A 'Teradata' backend for 'dplyr'. It makes it possible to operate
'Teradata' database <https://www.teradata.com/products-and-services/teradata-database/>
in the same way as manipulating data frames with 'dplyr'.
Author: Koji Makiyama [cre, aut],
Jim Hester [ctb]
Maintainer: Koji Makiyama <hoxo.smile@gmail.com>
Diff between dplyr.teradata versions 0.3.2 dated 2019-05-10 and 0.4.1 dated 2020-11-12
dplyr.teradata-0.3.2/dplyr.teradata/R/Connection.R |only dplyr.teradata-0.3.2/dplyr.teradata/R/Table.R |only dplyr.teradata-0.3.2/dplyr.teradata/man/TeradataOdbcConnection.Rd |only dplyr.teradata-0.3.2/dplyr.teradata/man/todbc-tables.Rd |only dplyr.teradata-0.4.1/dplyr.teradata/DESCRIPTION | 13 dplyr.teradata-0.4.1/dplyr.teradata/LICENSE | 2 dplyr.teradata-0.4.1/dplyr.teradata/MD5 | 42 - dplyr.teradata-0.4.1/dplyr.teradata/NAMESPACE | 23 dplyr.teradata-0.4.1/dplyr.teradata/NEWS.md | 13 dplyr.teradata-0.4.1/dplyr.teradata/R/Driver.R | 8 dplyr.teradata-0.4.1/dplyr.teradata/R/tbl-teradata.R | 70 - dplyr.teradata-0.4.1/dplyr.teradata/R/translate-sql-base-teradata.R | 43 + dplyr.teradata-0.4.1/dplyr.teradata/R/utils.R | 2 dplyr.teradata-0.4.1/dplyr.teradata/README.md | 130 +-- dplyr.teradata-0.4.1/dplyr.teradata/build/vignette.rds |binary dplyr.teradata-0.4.1/dplyr.teradata/inst/doc/dplyr.teradata.R | 56 - dplyr.teradata-0.4.1/dplyr.teradata/inst/doc/dplyr.teradata.Rmd | 70 - dplyr.teradata-0.4.1/dplyr.teradata/inst/doc/dplyr.teradata.html | 372 +++++----- dplyr.teradata-0.4.1/dplyr.teradata/man/blob_to_string.Rd | 2 dplyr.teradata-0.4.1/dplyr.teradata/man/bool_to_int.Rd |only dplyr.teradata-0.4.1/dplyr.teradata/man/count_if.Rd |only dplyr.teradata-0.4.1/dplyr.teradata/man/dbConnect-TeradataOdbcDriver-method.Rd | 27 dplyr.teradata-0.4.1/dplyr.teradata/man/like.Rd |only dplyr.teradata-0.4.1/dplyr.teradata/man/mod.Rd |only dplyr.teradata-0.4.1/dplyr.teradata/man/n_if.Rd |only dplyr.teradata-0.4.1/dplyr.teradata/man/to_timestamp.Rd |only dplyr.teradata-0.4.1/dplyr.teradata/vignettes/dplyr.teradata.Rmd | 70 - 27 files changed, 455 insertions(+), 488 deletions(-)
More information about dplyr.teradata at CRAN
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Title: Quality Report Generation for MaxQuant and mzTab Results
Description: Generates Proteomics (PTX) quality control (QC) reports for shotgun LC-MS data analyzed with the
MaxQuant software suite (from .txt files) or mzTab files (ideally from OpenMS 'QualityControl' tool).
Reports are customizable (target thresholds, subsetting) and available in HTML or PDF format.
Published in J. Proteome Res., Proteomics Quality Control: Quality Control Software for MaxQuant Results (2015)
<doi:10.1021/acs.jproteome.5b00780>.
Author: Chris Bielow [aut, cre],
Juliane Schmachtenberg [ctb],
Swenja Wagner [ctb],
Patricia Scheil [ctb],
Tom Waschischek [ctb],
Guido Mastrobuoni [dtc, rev]
Maintainer: Chris Bielow <chris.bielow@bsc.fu-berlin.de>
Diff between PTXQC versions 1.0.5 dated 2020-06-09 and 1.0.7 dated 2020-11-12
DESCRIPTION | 8 MD5 | 43 +-- NAMESPACE | 1 NEWS | 6 R/MzTabReader.R | 8 R/createReport.R | 352 ++++++++++---------------- R/createYaml.R |only R/qcMetric_EVD.R | 4 R/qcMetric_MSMS.R | 27 + R/qcMetric_MSMSScans.R | 4 README.md | 1 inst/doc/PTXQC-Basic_Guide_for_R_users.html | 4 inst/doc/PTXQC-CustomizeReport.Rmd | 2 inst/doc/PTXQC-CustomizeReport.html | 6 inst/doc/PTXQC-DragNDrop.html | 4 inst/doc/PTXQC-FAQ.html | 4 inst/doc/PTXQC-Input_And_Output_Data.html | 4 inst/doc/PTXQC-ListOfMetrics.html | 14 - inst/reportTemplate/PTXQC_report_template.Rmd | 2 man/PTXQC.Rd | 74 ++--- man/createReport.Rd | 2 man/createYaml.Rd |only tests/testthat/test_createYaml.R |only vignettes/PTXQC-CustomizeReport.Rmd | 2 24 files changed, 255 insertions(+), 317 deletions(-)
Title: A Set of Common Tools for Seasonal to Decadal Verification
Description: The advanced version of package 's2dverification'. It is
intended for 'seasonal to decadal' (s2d) climate forecast verification, but
it can also be used in other kinds of forecasts or general climate analysis.
This package is specially designed for the comparison between the experimental
and observational datasets. The functionality of the included functions covers
from data retrieval, data post-processing, skill scores against observation,
to visualization. Compared to 's2dverification', 's2dv' is more compatible
with the package 'startR', able to use multiple cores for computation and
handle multi-dimensional arrays with a higher flexibility.
Author: BSC-CNS [aut, cph],
An-Chi Ho [aut, cre],
Nuria Perez-Zanon [aut],
Roberto Bilbao [ctb],
Carlos Delgado [ctb],
Andrea Manrique [ctb],
Deborah Verfaillie [ctb]
Maintainer: An-Chi Ho <an.ho@bsc.es>
Diff between s2dv versions 0.0.1 dated 2020-03-08 and 0.1.0 dated 2020-11-12
s2dv-0.0.1/s2dv/tests |only s2dv-0.1.0/s2dv/DESCRIPTION | 29 +- s2dv-0.1.0/s2dv/MD5 | 113 +++++----- s2dv-0.1.0/s2dv/NAMESPACE | 17 + s2dv-0.1.0/s2dv/NEWS.md | 16 + s2dv-0.1.0/s2dv/R/AMV.R |only s2dv-0.1.0/s2dv/R/AnimateMap.R | 22 +- s2dv-0.1.0/s2dv/R/Ano.R |only s2dv-0.1.0/s2dv/R/Clim.R | 48 ++-- s2dv-0.1.0/s2dv/R/Composite.R |only s2dv-0.1.0/s2dv/R/ConfigApplyMatchingEntries.R | 10 s2dv-0.1.0/s2dv/R/ConfigEditEntry.R | 4 s2dv-0.1.0/s2dv/R/ConfigFileOpen.R | 20 - s2dv-0.1.0/s2dv/R/Corr.R | 68 +++--- s2dv-0.1.0/s2dv/R/GMST.R |only s2dv-0.1.0/s2dv/R/GSAT.R |only s2dv-0.1.0/s2dv/R/InsertDim.R | 27 +- s2dv-0.1.0/s2dv/R/Load.R | 274 +++++++++++++++++-------- s2dv-0.1.0/s2dv/R/MeanDims.R | 7 s2dv-0.1.0/s2dv/R/Persistence.R |only s2dv-0.1.0/s2dv/R/PlotAno.R |only s2dv-0.1.0/s2dv/R/PlotClim.R | 9 s2dv-0.1.0/s2dv/R/PlotEquiMap.R | 15 + s2dv-0.1.0/s2dv/R/PlotLayout.R | 15 + s2dv-0.1.0/s2dv/R/RMS.R | 94 +++++--- s2dv-0.1.0/s2dv/R/RMSSS.R | 98 +++++--- s2dv-0.1.0/s2dv/R/RandomWalkTest.R |only s2dv-0.1.0/s2dv/R/Regression.R | 55 ++--- s2dv-0.1.0/s2dv/R/SPOD.R |only s2dv-0.1.0/s2dv/R/Season.R | 31 ++ s2dv-0.1.0/s2dv/R/Smoothing.R |only s2dv-0.1.0/s2dv/R/TPI.R |only s2dv-0.1.0/s2dv/R/ToyModel.R | 21 + s2dv-0.1.0/s2dv/R/Trend.R | 66 ++++-- s2dv-0.1.0/s2dv/R/Utils.R | 181 ++++++++++++---- s2dv-0.1.0/s2dv/R/s2dv-package.R | 2 s2dv-0.1.0/s2dv/inst/doc |only s2dv-0.1.0/s2dv/man/AMV.Rd |only s2dv-0.1.0/s2dv/man/AnimateMap.Rd | 21 + s2dv-0.1.0/s2dv/man/Ano.Rd |only s2dv-0.1.0/s2dv/man/Clim.Rd | 16 + s2dv-0.1.0/s2dv/man/Composite.Rd |only s2dv-0.1.0/s2dv/man/ConfigFileOpen.Rd | 2 s2dv-0.1.0/s2dv/man/Corr.Rd | 24 +- s2dv-0.1.0/s2dv/man/GMST.Rd |only s2dv-0.1.0/s2dv/man/GSAT.Rd |only s2dv-0.1.0/s2dv/man/Load.Rd | 4 s2dv-0.1.0/s2dv/man/MeanDims.Rd | 8 s2dv-0.1.0/s2dv/man/Persistence.Rd |only s2dv-0.1.0/s2dv/man/PlotAno.Rd |only s2dv-0.1.0/s2dv/man/PlotClim.Rd | 11 - s2dv-0.1.0/s2dv/man/PlotEquiMap.Rd | 15 + s2dv-0.1.0/s2dv/man/PlotLayout.Rd | 15 + s2dv-0.1.0/s2dv/man/RMS.Rd | 24 +- s2dv-0.1.0/s2dv/man/RMSSS.Rd | 28 +- s2dv-0.1.0/s2dv/man/RandomWalkTest.Rd |only s2dv-0.1.0/s2dv/man/Regression.Rd | 18 - s2dv-0.1.0/s2dv/man/SPOD.Rd |only s2dv-0.1.0/s2dv/man/Season.Rd | 6 s2dv-0.1.0/s2dv/man/Smoothing.Rd |only s2dv-0.1.0/s2dv/man/TPI.Rd |only s2dv-0.1.0/s2dv/man/ToyModel.Rd | 21 + s2dv-0.1.0/s2dv/man/Trend.Rd | 20 + s2dv-0.1.0/s2dv/man/s2dv-package.Rd | 7 64 files changed, 1002 insertions(+), 480 deletions(-)
Title: Check the Heaviness of Package Dependencies
Description: It checks the heaviness of the packages that user's
package depends on. For each package listed in the "Depends", "Imports" and
"Suggests" fields in the DESCRIPTION file, it opens a new R session, loads the
package and counts the number of namespaces that are loaded. The summary of
the dependencies is visualized by a customized heatmap. Examples of dependency
analysis can be found at <https://jokergoo.github.io/pkgndep/stat/>.
Author: Zuguang Gu
Maintainer: Zuguang Gu <z.gu@dkfz.de>
Diff between pkgndep versions 1.0.0 dated 2020-05-21 and 1.0.1 dated 2020-11-12
DESCRIPTION | 10 ++--- MD5 | 14 +++---- R/pkgndep.R | 10 +++-- build/vignette.rds |binary inst/doc/pkgndep.Rmd | 4 +- inst/doc/pkgndep.html | 91 +++++++++++++++++++++++++++++++++++++++++++++----- man/plot.pkgndep.Rd | 2 - vignettes/pkgndep.Rmd | 4 +- 8 files changed, 105 insertions(+), 30 deletions(-)
Title: Acquisition and Processing of MODIS Products
Description: Download and processing functionalities for the Moderate Resolution
Imaging Spectroradiometer (MODIS). The package provides automated access to the
global online data archives LP DAAC (<https://lpdaac.usgs.gov/>), LAADS
(<https://ladsweb.modaps.eosdis.nasa.gov/>) and NSIDC (<https://nsidc.org/>)
as well as processing capabilities such as file conversion, mosaicking,
subsetting and time series filtering.
Author: Matteo Mattiuzzi [aut],
Florian Detsch [cre, aut]
Maintainer: Florian Detsch <fdetsch@web.de>
Diff between MODIS versions 1.2.2 dated 2020-06-24 and 1.2.3 dated 2020-11-12
DESCRIPTION | 10 MD5 | 24 NEWS | 7 R/EarthdataLogin.R | 376 ++++----- R/checkTools.R | 62 - R/getTile.R | 1208 +++++++++++++++---------------- R/lpdaacLogin.R | 96 +- R/minorFuns.R | 1594 +++++++++++++++++++++--------------------- R/runGdal.R | 902 +++++++++++------------ man/EarthdataLogin.Rd | 2 man/getTile.Rd | 4 man/lpdaacLogin-deprecated.Rd | 2 man/runGdal.Rd | 4 13 files changed, 2150 insertions(+), 2141 deletions(-)
Title: Parallel Use of Statistical Packages in Teaching
Description: When teaching statistics, it can often be desirable to
uncouple the content from specific software packages. To ease such
efforts, the Rosetta Stats website (<https://rosettastats.com>) allows
comparing analyses in different packages. This package is the companion
to the Rosetta Stats website, aiming to provide functions that produce
output that is similar to output from other statistical packages, thereby
facilitating 'software-agnostic' teaching of statistics.
Author: Gjalt-Jorn Peters [aut, cre] (<https://orcid.org/0000-0002-0336-9589>),
Ron Pat-El [ctb] (<https://orcid.org/0000-0002-4742-0163>),
Peter Verboon [ctb] (<https://orcid.org/0000-0001-8656-0890>),
Melissa Gordon Wolf [ctb] (<https://orcid.org/0000-0001-7677-0659>)
Maintainer: Gjalt-Jorn Peters <gjalt-jorn@userfriendlyscience.com>
Diff between rosetta versions 0.2.0 dated 2019-11-27 and 0.3.0 dated 2020-11-12
rosetta-0.2.0/rosetta/man/figures |only rosetta-0.2.0/rosetta/man/logRegr.Rd |only rosetta-0.2.0/rosetta/man/regr.Rd |only rosetta-0.3.0/rosetta/DESCRIPTION | 27 - rosetta-0.3.0/rosetta/MD5 | 97 +++-- rosetta-0.3.0/rosetta/NAMESPACE | 32 + rosetta-0.3.0/rosetta/R/confIntSD.R |only rosetta-0.3.0/rosetta/R/data-pp15.R |only rosetta-0.3.0/rosetta/R/dataReduction.R |only rosetta-0.3.0/rosetta/R/descriptiveCIs.R |only rosetta-0.3.0/rosetta/R/freqjmv.b.R | 36 + rosetta-0.3.0/rosetta/R/freqjmv.h.R | 42 +- rosetta-0.3.0/rosetta/R/gemm.R | 29 - rosetta-0.3.0/rosetta/R/ggBarChart.R |only rosetta-0.3.0/rosetta/R/ggBoxplot.R | 10 rosetta-0.3.0/rosetta/R/histogram.R |only rosetta-0.3.0/rosetta/R/logRegr.R | 308 ++++++++++++---- rosetta-0.3.0/rosetta/R/means.R |only rosetta-0.3.0/rosetta/R/oneway.R | 2 rosetta-0.3.0/rosetta/R/opts.R |only rosetta-0.3.0/rosetta/R/plotIMM.R | 25 - rosetta-0.3.0/rosetta/R/plotIMM3d.R |only rosetta-0.3.0/rosetta/R/plotSS.R | 53 +- rosetta-0.3.0/rosetta/R/prepPlotIMM.R | 36 + rosetta-0.3.0/rosetta/R/prepPlotSS.R | 36 + rosetta-0.3.0/rosetta/R/print.gemm.R | 107 ++++- rosetta-0.3.0/rosetta/R/recode.R |only rosetta-0.3.0/rosetta/R/regr.R | 391 +++++++++++++-------- rosetta-0.3.0/rosetta/R/reliability.R |only rosetta-0.3.0/rosetta/R/sums.R |only rosetta-0.3.0/rosetta/R/varView.R |only rosetta-0.3.0/rosetta/README.md | 21 - rosetta-0.3.0/rosetta/data/pp15.csv |only rosetta-0.3.0/rosetta/inst |only rosetta-0.3.0/rosetta/man/basicSPSStranslation.Rd | 337 +++++++++--------- rosetta-0.3.0/rosetta/man/buildModMedSemModel.Rd | 75 ++-- rosetta-0.3.0/rosetta/man/confIntSD.Rd |only rosetta-0.3.0/rosetta/man/cpbExample.Rd | 6 rosetta-0.3.0/rosetta/man/crossTab.Rd | 13 rosetta-0.3.0/rosetta/man/dlvPlot.Rd | 336 +++++++++--------- rosetta-0.3.0/rosetta/man/fanova.Rd | 204 +++++----- rosetta-0.3.0/rosetta/man/freqjmv.Rd | 50 +- rosetta-0.3.0/rosetta/man/frequencies.Rd | 187 +++++----- rosetta-0.3.0/rosetta/man/gemm.Rd | 99 ++--- rosetta-0.3.0/rosetta/man/ggBarChart.Rd |only rosetta-0.3.0/rosetta/man/ggBoxplot.Rd | 13 rosetta-0.3.0/rosetta/man/meanDiff.Rd | 274 +++++++------- rosetta-0.3.0/rosetta/man/meanDiff.multi.Rd | 202 +++++----- rosetta-0.3.0/rosetta/man/meansAndSums.Rd |only rosetta-0.3.0/rosetta/man/oneway.Rd | 299 ++++++++-------- rosetta-0.3.0/rosetta/man/opts.Rd |only rosetta-0.3.0/rosetta/man/partypanelData.Rd |only rosetta-0.3.0/rosetta/man/plotIMM3d.Rd |only rosetta-0.3.0/rosetta/man/posthocTGH.Rd | 14 rosetta-0.3.0/rosetta/man/prepIMM3d.Rd |only rosetta-0.3.0/rosetta/man/prepPlotIMM.Rd | 77 ++-- rosetta-0.3.0/rosetta/man/prepPlotSS.Rd | 92 ++-- rosetta-0.3.0/rosetta/man/recode.Rd |only rosetta-0.3.0/rosetta/man/rosettaDataReduction.Rd |only rosetta-0.3.0/rosetta/man/rosettaDescriptiveCIs.Rd |only rosetta-0.3.0/rosetta/man/rosettaLogRegr.Rd |only rosetta-0.3.0/rosetta/man/rosettaRegr.Rd |only rosetta-0.3.0/rosetta/man/rosettaReliability.Rd |only rosetta-0.3.0/rosetta/man/varView.Rd |only 64 files changed, 2080 insertions(+), 1450 deletions(-)
Title: Partitioning Uncertainty Components of an Incomplete Ensemble of
Climate Projections
Description: These functions use data augmentation and Bayesian techniques for the assessment of single-member and incomplete ensembles of climate projections. It provides unbiased estimates of climate change responses of all simulation chains and of all uncertainty variables. It additionally propagates uncertainty due to missing information in the estimates.
- Evin, G., B. Hingray, J. Blanchet, N. Eckert, S. Morin, and D. Verfaillie. (2019) <doi:10.1175/JCLI-D-18-0606.1>.
Author: Guillaume Evin [aut, cre]
Maintainer: Guillaume Evin <guillaume.evin@inrae.fr>
Diff between QUALYPSO versions 1.1 dated 2019-06-19 and 1.2 dated 2020-11-12
DESCRIPTION | 12 - MD5 | 16 - NAMESPACE | 3 R/QUALYPSO.r | 466 +++++++++++++++++++-------------------- R/imports.r | 1 man/QUALYPSO.ANOVA.Rd | 1 man/QUALYPSO.ANOVA.i.Rd | 1 man/QUALYPSO.Rd | 45 ++- man/QUALYPSO.process.scenario.Rd | 6 9 files changed, 288 insertions(+), 263 deletions(-)
Title: Perceptual Analysis, Visualization and Organization of Spectral
Colour Data
Description: A cohesive framework for parsing, analyzing and
organizing colour from spectral data.
Author: Thomas White [aut, cre] (<https://orcid.org/0000-0002-3976-1734>),
Rafael Maia [aut] (<https://orcid.org/0000-0002-7563-9795>),
Hugo Gruson [aut] (<https://orcid.org/0000-0002-4094-1476>),
John Endler [aut],
Chad Eliason [aut],
Pierre-Paul Bitton [aut] (<https://orcid.org/0000-0001-5984-2331>)
Maintainer: Thomas White <thomas.white026@gmail.com>
Diff between pavo versions 2.4.0 dated 2020-02-08 and 2.5.0 dated 2020-11-12
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Title: Meta-Analysis of Generalized Additive Models
Description: Meta-analysis of generalized additive
models and generalized additive mixed models. A typical use case is
when data cannot be shared across locations, and an overall meta-analytic
fit is sought. 'metagam' provides functionality for removing individual
participant data from models computed using the 'mgcv' and 'gamm4' packages such
that the model objects can be shared without exposing individual data.
Furthermore, methods for meta-analysing these fits are provided. The implemented
methods are described in Sorensen et al. (2020), <arXiv:2002.02627>,
extending previous works by Schwartz and Zanobetti (2000)
and Crippa et al. (2018) <doi:10.6000/1929-6029.2018.07.02.1>.
Author: Oystein Sorensen [aut, cre] (<https://orcid.org/0000-0003-0724-3542>),
Andreas M. Brandmaier [aut] (<https://orcid.org/0000-0001-8765-6982>),
Athanasia Mo Mowinckel [aut] (<https://orcid.org/0000-0002-5756-0223>)
Maintainer: Oystein Sorensen <oystein.sorensen@psykologi.uio.no>
Diff between metagam versions 0.1.2 dated 2020-06-22 and 0.2.0 dated 2020-11-12
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Title: Interface to 'fastai'
Description: The 'fastai' <https://docs.fast.ai/index.html> library
simplifies training fast and accurate neural networks
using modern best practices. It is based on research
in to deep learning best practices undertaken
at 'fast.ai', including 'out of the box' support
for vision, text, tabular, audio, time series, and
collaborative filtering models.
Author: Turgut Abdullayev [ctb, cre, cph, aut]
Maintainer: Turgut Abdullayev <turqut.a.314@gmail.com>
Diff between fastai versions 2.0.0 dated 2020-11-11 and 2.0.1 dated 2020-11-12
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Title: Historical and Ahistorical Population Projection Matrix Analysis
Description: Creates matrix population models for use in population ecological
analyses. Specializes on the construction of historical matrices,
which are 2d matrices comprising 3 time intervals of demographic
information. Estimates both raw and function-based forms of
historical and standard ahistorical matrices. Methodology based on
Ehrlen (2000) <doi:10.1890/0012-9658(2000)081[1675:TDOPPD]2.0.CO;2>.
Author: Richard P. Shefferson [aut, cre]
(<https://orcid.org/0000-0002-5234-3131>),
Johan Ehrlen [aut] (<https://orcid.org/0000-0001-8539-8967>)
Maintainer: Richard P. Shefferson <cdorm@g.ecc.u-tokyo.ac.jp>
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Title: Compositional Data Analysis
Description: Regression, classification, contour plots, hypothesis testing and fitting of distributions for compositional data are some of the functions included. The standard textbook for such data is John Aitchison's (1986) "The statistical analysis of compositional data". Relevant papers include a) Tsagris M.T., Preston S. and Wood A.T.A. (2011) A data-based power transformation for compositional data. Fourth International International Workshop on Compositional Data Analysis. b) Tsagris M. (2014). The k-NN algorithm for compositional data: a revised approach with and without zero values present. Journal of Data Science, 12(3):519--534. c) Tsagris M. (2015). A novel, divergence based, regression for compositional data. Proceedings of the 28th Panhellenic Statistics Conference, 15-18 April 2015, Athens, Greece, 430--444. d) Tsagris M. (2015). Regression analysis with compositional data containing zero values. Chilean Journal of Statistics, 6(2):47--57. e) Tsagris M., Preston S. and Wood A.T.A. (2016). Improved supervised classification for compositional data using the alpha-transformation. Journal of Classification, 33(2):243--261. <doi:10.1007/s00357-016-9207-5>. f) Tsagris M., Preston S. and Wood A.T.A. (2017). Nonparametric hypothesis testing for equality of means on the simplex. Journal of Statistical Computation and Simulation, 87(2): 406--422. <doi:10.1080/00949655.2016.1216554> g) Tsagris M. and Stewart C. (2018). A Dirichlet regression model for compositional data with zeros. Lobachevskii Journal of Mathematics, 39(3): 398--412. <doi:10.1134/S1995080218030198>. h) Alenazi A. (2019). Regression for compositional data with compositional data as predictor variables with or without zero values. Journal of Data Science, 17(1): 219--238. <doi:10.6339/JDS.201901_17(1).0010>. i) Tsagris M. and Stewart C. (2020). A folded model for compositional data analysis. Australian and New Zealand Journal of Statistics, 62(2):249--277. <doi:10.1111/anzs.12289>. j) Tsagris M., Alenazi A. and Stewart C. (2020). The alpha-k-NN regression for compositional data. <arXiv:2002.05137>. We further include functions for percentages (or proportions).
Author: Michail Tsagris [aut, cre],
Giorgos Athineou [aut],
Abdulaziz Alenazi [ctb]
Maintainer: Michail Tsagris <mtsagris@uoc.gr>
Diff between Compositional versions 4.1 dated 2020-09-19 and 4.2 dated 2020-11-12
DESCRIPTION | 8 ++++---- MD5 | 37 ++++++++++++++++++++++++------------- NAMESPACE | 6 +++--- R/acor.R |only R/acor.tune.R |only R/alfa.reg.R | 2 +- R/alfadista.R | 2 +- R/choose.pc.R |only R/frechet2.R | 4 ++-- R/helling.prop.reg.R |only R/js.prop.reg.R |only R/klcompreg.boot.R | 7 ++++--- R/ols.prop.reg.R |only R/pcr.R | 6 +++++- R/rda.R | 2 +- R/rda.tune.R | 4 ++-- R/zilogitnorm.est.R |only man/Compositional-package.Rd | 14 +++++++++++--- man/acor.Rd |only man/acor.tune.Rd |only man/alfa.profile.Rd | 4 ++-- man/beta.est.Rd | 19 ++++++++++++++++--- man/choose.pc.Rd |only man/glmpcr.tune.Rd | 3 +-- man/ols.prop.reg.Rd |only 25 files changed, 77 insertions(+), 41 deletions(-)
Title: Bayesian Latent Variable Analysis
Description: Fit a variety of Bayesian latent variable models, including confirmatory
factor analysis, structural equation models, and latent growth curve models.
Author: Edgar Merkle [aut, cre] (<https://orcid.org/0000-0001-7158-0653>),
Yves Rosseel [aut],
Ben Goodrich [aut],
Mauricio Garnier-Villarreal [ctb]
(<https://orcid.org/0000-0002-2951-6647>, R/blav_compare.R,
R/ctr_bayes_fit.R),
Terrence D. Jorgensen [ctb] (<https://orcid.org/0000-0001-5111-6773>,
R/ctr_bayes_fit.R, R/ctr_ppmc.R),
Huub Hoofs [ctb] (R/ctr_bayes_fit.R),
Rens van de Schoot [ctb] (R/ctr_bayes_fit.R)
Maintainer: Edgar Merkle <merklee@missouri.edu>
Diff between blavaan versions 0.3-10 dated 2020-08-03 and 0.3-12 dated 2020-11-12
DESCRIPTION | 12 - MD5 | 62 +++---- NAMESPACE | 4 NEWS | 14 + R/blav_compare.R | 1 R/blav_fit_measures.R | 22 -- R/blav_object_inspect.R | 8 R/blav_object_methods.R | 17 +- R/blav_utils.R | 89 ++++------ R/blavaan.R | 110 +++++++++---- R/ctr_ppmc.R | 173 ++++++++++++++++----- R/dpriors.R | 10 - R/lav_export_stanclassic.R | 6 R/lav_export_stanmarg.R | 28 ++- R/lvgqs.R |only R/margloglik.R | 32 ++- R/postpred.R | 7 R/set_priors.R | 10 - R/set_stanpars.R | 16 + R/stanmarg_data.R | 51 +++--- README.md | 12 - inst/testdata/sysdata.rda |binary man/bcfa.Rd | 31 ++- man/bgrowth.Rd | 31 ++- man/blavaan.Rd | 25 +-- man/bsem.Rd | 31 ++- man/ppmc.Rd | 14 + src/Makevars | 15 + src/Makevars.win | 17 +- src/blavaan-win.def |only src/stan_files/stanmarg.stan | 221 +++++++++++++++------------ tests/testthat/tests.blavaan.R | 19 +- tests/testthat/tests.blavaanobject-methods.R | 13 + 33 files changed, 691 insertions(+), 410 deletions(-)
Title: Extra Recipes Steps for Dealing with Unbalanced Data
Description: A dataset with an uneven number of cases in each
class is said to be unbalanced. Many models produce a subpar
performance on unbalanced datasets. A dataset can be balanced by
increasing the number of minority cases using SMOTE 2011
<arXiv:1106.1813>, BorderlineSMOTE 2005 <doi:10.1007/11538059_91> and
ADASYN 2008 <https://ieeexplore.ieee.org/document/4633969>. Or by
decreasing the number of majority cases using NearMiss 2003
<https://www.site.uottawa.ca/~nat/Workshop2003/jzhang.pdf> or Tomek
link removal 1976 <https://ieeexplore.ieee.org/document/4309452>.
Author: Emil Hvitfeldt [aut, cre] (<https://orcid.org/0000-0002-0679-1945>)
Maintainer: Emil Hvitfeldt <emilhhvitfeldt@gmail.com>
Diff between themis versions 0.1.2 dated 2020-08-14 and 0.1.3 dated 2020-11-12
themis-0.1.2/themis/R/zzz.R |only themis-0.1.3/themis/DESCRIPTION | 14 - themis-0.1.3/themis/MD5 | 86 ++++----- themis-0.1.3/themis/NAMESPACE | 27 ++ themis-0.1.3/themis/NEWS.md | 6 themis-0.1.3/themis/R/0_imports.R | 12 + themis-0.1.3/themis/R/adasyn.R | 62 ++++-- themis-0.1.3/themis/R/adasyn_impl.R | 32 ++- themis-0.1.3/themis/R/bsmote.R | 75 ++++---- themis-0.1.3/themis/R/bsmote_impl.R | 24 +- themis-0.1.3/themis/R/downsample.R | 61 +++--- themis-0.1.3/themis/R/misc.R | 22 +- themis-0.1.3/themis/R/nearmiss.R | 64 ++++-- themis-0.1.3/themis/R/nearmiss_impl.R | 12 + themis-0.1.3/themis/R/rose.R | 66 ++++--- themis-0.1.3/themis/R/smote.R | 57 +++--- themis-0.1.3/themis/R/smote_impl.R | 10 - themis-0.1.3/themis/R/tomek.R | 61 ++++-- themis-0.1.3/themis/R/upsample.R | 63 ++++-- themis-0.1.3/themis/README.md | 14 - themis-0.1.3/themis/man/figures/README-unnamed-chunk-2-1.png |binary themis-0.1.3/themis/man/figures/README-unnamed-chunk-3-1.png |binary themis-0.1.3/themis/man/figures/README-unnamed-chunk-4-1.png |binary themis-0.1.3/themis/man/figures/README-unnamed-chunk-5-1.png |binary themis-0.1.3/themis/man/figures/README-unnamed-chunk-6-1.png |binary themis-0.1.3/themis/man/reexports.Rd |only themis-0.1.3/themis/man/required_pkgs.step.Rd |only themis-0.1.3/themis/man/step_adasyn.Rd | 7 themis-0.1.3/themis/man/step_bsmote.Rd | 25 +- themis-0.1.3/themis/man/step_downsample.Rd | 6 themis-0.1.3/themis/man/step_nearmiss.Rd | 7 themis-0.1.3/themis/man/step_rose.Rd | 9 themis-0.1.3/themis/man/step_smote.Rd | 13 - themis-0.1.3/themis/man/step_tomek.Rd | 7 themis-0.1.3/themis/man/step_upsample.Rd | 10 - themis-0.1.3/themis/man/tunable.step_adasyn.Rd | 14 - themis-0.1.3/themis/tests/testthat/helper-test-functions.R | 101 +++++------ themis-0.1.3/themis/tests/testthat/test-S3-methods.R |only themis-0.1.3/themis/tests/testthat/test-adasyn.R | 17 + themis-0.1.3/themis/tests/testthat/test-bsmote.R | 8 themis-0.1.3/themis/tests/testthat/test-downsample.R | 4 themis-0.1.3/themis/tests/testthat/test-nearmiss.R | 2 themis-0.1.3/themis/tests/testthat/test-rose.R | 8 themis-0.1.3/themis/tests/testthat/test-smote.R | 24 ++ themis-0.1.3/themis/tests/testthat/test-smote_impl.R | 12 - themis-0.1.3/themis/tests/testthat/test-upsample.R | 4 46 files changed, 614 insertions(+), 432 deletions(-)
Title: Datasets for 'spatstat'
Description: Contains all the datasets for the 'spatstat' package.
Author: Adrian Baddeley [aut, cre] (<https://orcid.org/0000-0001-9499-8382>),
Rolf Turner [aut] (<https://orcid.org/0000-0001-5521-5218>),
Ege Rubak [aut] (<https://orcid.org/0000-0002-6675-533X>)
Maintainer: Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>
Diff between spatstat.data versions 1.4-3 dated 2020-01-26 and 1.5-2 dated 2020-11-12
spatstat.data-1.4-3/spatstat.data/data/datalist |only spatstat.data-1.5-2/spatstat.data/DESCRIPTION | 12 - spatstat.data-1.5-2/spatstat.data/MD5 | 123 +++++------- spatstat.data-1.5-2/spatstat.data/data/Kovesi.rda |binary spatstat.data-1.5-2/spatstat.data/data/amacrine.rda |binary spatstat.data-1.5-2/spatstat.data/data/anemones.rda |binary spatstat.data-1.5-2/spatstat.data/data/ants.rda |binary spatstat.data-1.5-2/spatstat.data/data/austates.rda |binary spatstat.data-1.5-2/spatstat.data/data/bdspots.rda |binary spatstat.data-1.5-2/spatstat.data/data/bei.rda |binary spatstat.data-1.5-2/spatstat.data/data/betacells.rda |binary spatstat.data-1.5-2/spatstat.data/data/bramblecanes.rda |binary spatstat.data-1.5-2/spatstat.data/data/bronzefilter.rda |binary spatstat.data-1.5-2/spatstat.data/data/cells.rda |binary spatstat.data-1.5-2/spatstat.data/data/cetaceans.rda |binary spatstat.data-1.5-2/spatstat.data/data/chicago.rda |binary spatstat.data-1.5-2/spatstat.data/data/chorley.rda |binary spatstat.data-1.5-2/spatstat.data/data/clmfires.rda |binary spatstat.data-1.5-2/spatstat.data/data/copper.rda |binary spatstat.data-1.5-2/spatstat.data/data/demohyper.rda |binary spatstat.data-1.5-2/spatstat.data/data/demopat.rda |binary spatstat.data-1.5-2/spatstat.data/data/dendrite.rda |binary spatstat.data-1.5-2/spatstat.data/data/finpines.rda |binary spatstat.data-1.5-2/spatstat.data/data/flu.rda |binary spatstat.data-1.5-2/spatstat.data/data/ganglia.rda |binary spatstat.data-1.5-2/spatstat.data/data/gordon.rda |binary spatstat.data-1.5-2/spatstat.data/data/gorillas.rda |binary spatstat.data-1.5-2/spatstat.data/data/hamster.rda |binary spatstat.data-1.5-2/spatstat.data/data/heather.rda |binary spatstat.data-1.5-2/spatstat.data/data/humberside.rda |binary spatstat.data-1.5-2/spatstat.data/data/hyytiala.rda |binary spatstat.data-1.5-2/spatstat.data/data/japanesepines.rda |binary spatstat.data-1.5-2/spatstat.data/data/lansing.rda |binary spatstat.data-1.5-2/spatstat.data/data/letterR.rda |binary spatstat.data-1.5-2/spatstat.data/data/longleaf.rda |binary spatstat.data-1.5-2/spatstat.data/data/mucosa.rda |binary spatstat.data-1.5-2/spatstat.data/data/murchison.rda |binary spatstat.data-1.5-2/spatstat.data/data/nbfires.rda |binary spatstat.data-1.5-2/spatstat.data/data/nztrees.rda |binary spatstat.data-1.5-2/spatstat.data/data/osteo.rda |binary spatstat.data-1.5-2/spatstat.data/data/paracou.rda |binary spatstat.data-1.5-2/spatstat.data/data/ponderosa.rda |binary spatstat.data-1.5-2/spatstat.data/data/pyramidal.rda |binary spatstat.data-1.5-2/spatstat.data/data/redwood.rda |binary spatstat.data-1.5-2/spatstat.data/data/redwood3.rda |binary spatstat.data-1.5-2/spatstat.data/data/redwoodfull.rda |binary spatstat.data-1.5-2/spatstat.data/data/residualspaper.rda |binary spatstat.data-1.5-2/spatstat.data/data/shapley.rda |binary spatstat.data-1.5-2/spatstat.data/data/simba.rda |binary spatstat.data-1.5-2/spatstat.data/data/simdat.rda |binary spatstat.data-1.5-2/spatstat.data/data/simplenet.rda |binary spatstat.data-1.5-2/spatstat.data/data/spiders.rda |binary spatstat.data-1.5-2/spatstat.data/data/sporophores.rda |binary spatstat.data-1.5-2/spatstat.data/data/spruces.rda |binary spatstat.data-1.5-2/spatstat.data/data/swedishpines.rda |binary spatstat.data-1.5-2/spatstat.data/data/urkiola.rda |binary spatstat.data-1.5-2/spatstat.data/data/vesicles.rda |binary spatstat.data-1.5-2/spatstat.data/data/waka.rda |binary spatstat.data-1.5-2/spatstat.data/data/waterstriders.rda |binary spatstat.data-1.5-2/spatstat.data/inst/doc/packagesizes.txt | 2 spatstat.data-1.5-2/spatstat.data/man/dendrite.Rd | 11 - spatstat.data-1.5-2/spatstat.data/man/gordon.Rd | 2 spatstat.data-1.5-2/spatstat.data/man/murchison.Rd | 23 ++ 63 files changed, 96 insertions(+), 77 deletions(-)
Title: A Poor Man's Dependency Free Recreation of 'dplyr'
Description: A replication of key functionality from 'dplyr' and the wider 'tidyverse' using only 'base'.
Author: Nathan Eastwood [aut, cre]
Maintainer: Nathan Eastwood <nathan.eastwood@icloud.com>
Diff between poorman versions 0.2.2 dated 2020-10-11 and 0.2.3 dated 2020-11-12
poorman-0.2.2/poorman/inst/tinytest/test_joins.R |only poorman-0.2.3/poorman/DESCRIPTION | 6 poorman-0.2.3/poorman/MD5 | 58 ++-- poorman-0.2.3/poorman/NAMESPACE | 6 poorman-0.2.3/poorman/NEWS.md | 17 + poorman-0.2.3/poorman/R/across.R |only poorman-0.2.3/poorman/R/bind.R | 2 poorman-0.2.3/poorman/R/context.R | 16 + poorman-0.2.3/poorman/R/group_split.R | 2 poorman-0.2.3/poorman/R/joins.R | 103 ++++++-- poorman-0.2.3/poorman/R/mutate.R | 21 + poorman-0.2.3/poorman/R/n_distinct.R | 9 poorman-0.2.3/poorman/R/nest_by.R | 2 poorman-0.2.3/poorman/R/relocate.R | 50 +++- poorman-0.2.3/poorman/R/rename.R | 2 poorman-0.2.3/poorman/R/select.R | 95 +++++--- poorman-0.2.3/poorman/R/select_positions.R | 19 + poorman-0.2.3/poorman/R/summarise.R | 23 + poorman-0.2.3/poorman/R/unite.R | 10 poorman-0.2.3/poorman/R/utils.R | 22 + poorman-0.2.3/poorman/build/vignette.rds |binary poorman-0.2.3/poorman/inst/doc/faq.html | 9 poorman-0.2.3/poorman/inst/tinytest/test_across.R |only poorman-0.2.3/poorman/inst/tinytest/test_mutate.R | 163 +++++++++++--- poorman-0.2.3/poorman/inst/tinytest/test_mutate_joins.R |only poorman-0.2.3/poorman/inst/tinytest/test_n_distinct.R | 12 + poorman-0.2.3/poorman/inst/tinytest/test_nest_by.R | 4 poorman-0.2.3/poorman/inst/tinytest/test_select_helpers.R | 18 + poorman-0.2.3/poorman/man/across.Rd |only poorman-0.2.3/poorman/man/mutate_joins.Rd | 117 ++++++++-- poorman-0.2.3/poorman/man/n_distinct.Rd | 2 poorman-0.2.3/poorman/man/relocate.Rd |only poorman-0.2.3/poorman/man/select.Rd | 102 ++++++-- 33 files changed, 702 insertions(+), 188 deletions(-)
Title: Data-Driven Identification of SVAR Models
Description: Implements data-driven identification methods for structural vector autoregressive (SVAR) models.
Based on an existing VAR model object (provided by e.g. VAR() from the 'vars' package), the structural
impact matrix is obtained via data-driven identification techniques (i.e. changes in volatility (Rigobon, R. (2003) <doi:10.1162/003465303772815727>), patterns of GARCH (Normadin, M., Phaneuf, L. (2004) <doi:10.1016/j.jmoneco.2003.11.002>),
independent component analysis (Matteson, D. S, Tsay, R. S., (2013) <doi:10.1080/01621459.2016.1150851>), least dependent innovations (Herwartz, H., Ploedt, M., (2016) <doi:10.1016/j.jimonfin.2015.11.001>),
smooth transition in variances (Luetkepohl, H., Netsunajev, A. (2017) <doi:10.1016/j.jedc.2017.09.001>) or non-Gaussian maximum likelihood (Lanne, M., Meitz, M., Saikkonen, P. (2017) <doi:10.1016/j.jeconom.2016.06.002>)).
Author: Alexander Lange [aut, cre],
Bernhard Dalheimer [aut],
Helmut Herwartz [aut],
Simone Maxand [aut],
Hannes Riebl [ctb]
Maintainer: Alexander Lange <alexander.lange@uni-goettingen.de>
Diff between svars versions 1.3.3 dated 2020-01-09 and 1.3.4 dated 2020-11-12
DESCRIPTION | 11 - MD5 | 63 +++--- R/RcppExports.R | 8 R/cf.R | 46 ----- R/fevd.svars.R | 36 --- R/get_A_hat.R |only R/get_var_objects.R | 21 ++ R/hd.R | 39 ---- R/id.chol.R | 22 +- R/id.cvm.R | 20 +- R/id.dc.R | 20 +- R/id.garch.R | 2 R/id.ngml.R | 2 R/id.st.R | 10 - R/id_cv_boot.R | 2 R/id_ngml_boot.R | 2 R/id_st_boot.R | 2 R/irf.svars.R | 35 --- R/plot.cf.R | 2 R/plot.sboot.R | 48 +++++ R/plot.svarirf.R | 41 ++++ R/stability.R | 2 build/vignette.rds |binary inst/doc/svars.pdf |binary man/cf.Rd | 2 man/id.chol.Rd | 2 man/id.st.Rd | 7 man/stability.Rd | 2 src/IRF.cpp |only src/RcppExports.cpp | 27 ++ tests/testthat/test-id.garch.R | 298 ++++++++++++++++----------------- tests/testthat/test-id.st.R | 308 +++++++++++++++++----------------- tests/testthat/test-id_dc.R | 370 ++++++++++++++++++++--------------------- tests/testthat/test-irf.R |only 34 files changed, 734 insertions(+), 716 deletions(-)
Title: Interface to 'MLflow'
Description: R interface to 'MLflow', open source platform for
the complete machine learning life cycle, see <https://mlflow.org/>.
This package supports installing 'MLflow', tracking experiments,
creating and running projects, and saving and serving models.
Author: Matei Zaharia [aut, cre],
Javier Luraschi [aut],
Kevin Kuo [aut] (<https://orcid.org/0000-0001-7803-7901>),
RStudio [cph]
Maintainer: Matei Zaharia <matei@databricks.com>
Diff between mlflow versions 1.10.0 dated 2020-07-21 and 1.12.0 dated 2020-11-12
mlflow-1.10.0/mlflow/tests/testthat/test_keras_model.R |only mlflow-1.12.0/mlflow/DESCRIPTION | 39 +- mlflow-1.12.0/mlflow/MD5 | 57 +-- mlflow-1.12.0/mlflow/NAMESPACE | 7 mlflow-1.12.0/mlflow/R/cli.R | 9 mlflow-1.12.0/mlflow/R/install.R | 5 mlflow-1.12.0/mlflow/R/model-h2o.R |only mlflow-1.12.0/mlflow/R/model-keras.R | 26 - mlflow-1.12.0/mlflow/R/model-python.R | 9 mlflow-1.12.0/mlflow/R/model-utils.R |only mlflow-1.12.0/mlflow/R/model-xgboost.R |only mlflow-1.12.0/mlflow/R/model.R | 15 mlflow-1.12.0/mlflow/R/tracking-experiments.R | 2 mlflow-1.12.0/mlflow/R/tracking-globals.R | 9 mlflow-1.12.0/mlflow/R/tracking-observer.R |only mlflow-1.12.0/mlflow/R/tracking-runs.R | 73 ++-- mlflow-1.12.0/mlflow/README.md | 4 mlflow-1.12.0/mlflow/man/install_mlflow.Rd | 2 mlflow-1.12.0/mlflow/man/mlflow-package.Rd | 8 mlflow-1.12.0/mlflow/man/mlflow_maybe_create_conda_env.Rd |only mlflow-1.12.0/mlflow/man/mlflow_register_external_observer.Rd |only mlflow-1.12.0/mlflow/man/mlflow_rename_experiment.Rd | 2 mlflow-1.12.0/mlflow/man/mlflow_save_model.Rd | 9 mlflow-1.12.0/mlflow/man/reexports.Rd | 6 mlflow-1.12.0/mlflow/tests/testthat.R | 3 mlflow-1.12.0/mlflow/tests/testthat/test |only mlflow-1.12.0/mlflow/tests/testthat/test-client.R | 4 mlflow-1.12.0/mlflow/tests/testthat/test-keras-model.R |only mlflow-1.12.0/mlflow/tests/testthat/test-model-h2o.R |only mlflow-1.12.0/mlflow/tests/testthat/test-model-xgboost.R |only mlflow-1.12.0/mlflow/tests/testthat/test-model.R | 32 + mlflow-1.12.0/mlflow/tests/testthat/test-run.R | 26 + mlflow-1.12.0/mlflow/tests/testthat/test-serve.R | 180 +++++----- mlflow-1.12.0/mlflow/tests/testthat/test-tracking-experiments.R | 4 mlflow-1.12.0/mlflow/tests/testthat/test-tracking-runs.R | 46 ++ 35 files changed, 361 insertions(+), 216 deletions(-)
Title: Clustering and Visualizing Distance Matrices
Description: Defines the classes used to explore, cluster and
visualize distance matrices, especially those arising from binary data.
Author: Kevin R. Coombes, Caitlin E. Coombes
Maintainer: Kevin R. Coombes <krc@silicovore.com>
Diff between Mercator versions 0.11.2 dated 2020-08-24 and 0.11.5 dated 2020-11-12
DESCRIPTION | 13 ++--- MD5 | 26 +++++----- NAMESPACE | 6 +- NEWS | 6 ++ R/02-binaryMatrix.R | 12 +++- TODO | 2 build/vignette.rds |binary data/CML1000.rda |binary data/CML500.rda |binary data/fakedata.rda |binary data/lgfFeatures.rda |binary inst/doc/mercVis.html | 123 +++++++++++++++++++++++++++++++++++++++---------- inst/doc/mercator.html | 76 +++++++++++++++++++++++++++++- man/binaryMatrix.Rd | 3 + 14 files changed, 216 insertions(+), 51 deletions(-)
Title: Learn Computer and Data Science using Algorithmic Trading
Description: Provide sets of functions and methods to learn and practice data science using idea of algorithmic trading.
Main goal is to process information within "Decision Support System" to come up with analysis or predictions.
There are several utilities such as dynamic and adaptive risk management using reinforcement learning
and even functions to generate predictions of price changes using pattern recognition deep regression learning.
Summary of Methods used: Awesome H2O tutorials: <https://github.com/h2oai/awesome-h2o>,
Market Type research of Van Tharp Institute: <https://www.vantharp.com/>,
Reinforcement Learning R package: <https://CRAN.R-project.org/package=ReinforcementLearning>.
Author: Vladimir Zhbanko
Maintainer: Vladimir Zhbanko <vladimir.zhbanko@gmail.com>
Diff between lazytrade versions 0.4.1 dated 2020-10-22 and 0.4.2 dated 2020-11-12
DESCRIPTION | 8 ++++---- MD5 | 17 +++++++++-------- NEWS.md | 10 ++++++++++ R/aml_make_model.R | 15 ++++++++++----- R/aml_test_model.R | 21 +++++++++++++++++---- R/check_if_optimize.R | 2 +- R/import_data_mt.R | 2 +- inst/extdata/TickSize_AI_RSIADX.csv |only man/aml_make_model.Rd | 12 +++++++++--- man/aml_test_model.Rd | 7 ++++++- 10 files changed, 67 insertions(+), 27 deletions(-)
Title: Dave Armstrong's Miscellaneous Functions
Description: Miscellaneous set of functions I use in my teaching either at the University of Western Ontario or the Inter-university Consortium for Political and Social Research (ICPSR) Summer Program in Quantitative Methods. Broadly, the functions help with presentation and interpretation of LMs and GLMs, but also implement some new tools like Alternating Least Squares Optimal Scaling for dependent variables, a Bayesian analog to the ALSOS algorithm. There are also tools to help understand interactions in both LMs and binary GLMs.
Author: Dave Armstrong [aut, cre]
Maintainer: Dave Armstrong <dave@quantoid.net>
Diff between DAMisc versions 1.6.1 dated 2020-09-11 and 1.6.2 dated 2020-11-12
DESCRIPTION | 10 +- MD5 | 15 +-- NAMESPACE | 3 R/DAMisc_functions.R | 155 +++++++++++++++++++++++++++++++++++- R/damisc-package.R | 3 build/vignette.rds |binary inst/doc/alsos.html | 6 - inst/doc/binaryDV_interactions.html | 4 man/loess.as.Rd |only 9 files changed, 174 insertions(+), 22 deletions(-)