Title: Tipping Point Analyses
Description: The strength of evidence provided by epidemiological and observational
studies is inherently limited by the potential for unmeasured confounding.
We focus on three key quantities: the observed bound of the confidence interval
closest to the null, a plausible residual effect size for an unmeasured continuous
or binary confounder, and a realistic mean difference or prevalence difference for
this hypothetical confounder. Building on the methods put forth by
Lin, Psaty, & Kronmal (1998) DOI:10.2307/2533848, we can use these quantities to
assess how an unmeasured confounder may tip our result to insignificance, rendering the
study inconclusive.
Author: Lucy D'Agostino McGowan
Maintainer: Lucy D'Agostino McGowan <lucydagostino@gmail.com>
Diff between tipr versions 0.1.1 dated 2017-11-28 and 0.2.0 dated 2020-11-16
tipr-0.1.1/tipr/man/tip_with_continuous.Rd |only tipr-0.2.0/tipr/DESCRIPTION | 16 - tipr-0.2.0/tipr/MD5 | 24 +- tipr-0.2.0/tipr/NAMESPACE | 1 tipr-0.2.0/tipr/NEWS.md | 6 tipr-0.2.0/tipr/R/tip-helpers.R | 168 ++++++++++---- tipr-0.2.0/tipr/R/tip.R | 254 +++++++++++++++++----- tipr-0.2.0/tipr/R/tipr-package.R | 20 + tipr-0.2.0/tipr/R/utils.R | 25 ++ tipr-0.2.0/tipr/README.md | 166 +++++++++++--- tipr-0.2.0/tipr/man/tip.Rd |only tipr-0.2.0/tipr/man/tip_with_binary.Rd | 74 +++++- tipr-0.2.0/tipr/man/tipr.Rd | 16 + tipr-0.2.0/tipr/tests/testthat/test-tip-helpers.R | 61 +++-- 14 files changed, 631 insertions(+), 200 deletions(-)
Title: Loading Fonts into R
Description: Loading system fonts and Google Fonts
<https://fonts.google.com/> into R, in order to
support other packages such as 'R2SWF' and 'showtext'.
Author: Yixuan Qiu and authors/contributors of the
included fonts. See file AUTHORS for details.
Maintainer: Yixuan Qiu <yixuan.qiu@cos.name>
Diff between sysfonts versions 0.8.1 dated 2020-05-08 and 0.8.2 dated 2020-11-16
DESCRIPTION | 10 +++++----- MD5 | 8 ++++---- R/font.R | 9 +++------ inst/NEWS.Rd | 10 ++++++++++ inst/fonts/webfonts.bz2 |binary 5 files changed, 22 insertions(+), 15 deletions(-)
Title: 'Rcpp' Integration for the 'Armadillo' Templated Linear Algebra
Library
Description: 'Armadillo' is a templated C++ linear algebra library (by Conrad
Sanderson) that aims towards a good balance between speed and ease of use. Integer,
floating point and complex numbers are supported, as well as a subset of
trigonometric and statistics functions. Various matrix decompositions are
provided through optional integration with LAPACK and ATLAS libraries.
The 'RcppArmadillo' package includes the header files from the templated
'Armadillo' library. Thus users do not need to install 'Armadillo' itself in
order to use 'RcppArmadillo'. From release 7.800.0 on, 'Armadillo' is
licensed under Apache License 2; previous releases were under licensed as
MPL 2.0 from version 3.800.0 onwards and LGPL-3 prior to that;
'RcppArmadillo' (the 'Rcpp' bindings/bridge to Armadillo) is licensed under
the GNU GPL version 2 or later, as is the rest of 'Rcpp'. Note that
Armadillo requires a fairly recent compiler; for the g++ family at least
version 4.6.* is required.
Author: Dirk Eddelbuettel, Romain Francois, Doug Bates and Binxiang Ni
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppArmadillo versions 0.10.1.0.0 dated 2020-10-20 and 0.10.1.2.0 dated 2020-11-16
ChangeLog | 35 ++ DESCRIPTION | 10 MD5 | 54 +-- R/RcppExports.R | 9 build/vignette.rds |binary configure | 35 +- configure.ac | 2 inst/NEWS.Rd | 261 ++++++++------- inst/doc/RcppArmadillo-intro.pdf |binary inst/doc/RcppArmadillo-sparseMatrix.pdf |binary inst/include/RcppArmadilloForward.h | 2 inst/include/armadillo_bits/Col_bones.hpp | 2 inst/include/armadillo_bits/Col_meat.hpp | 1 inst/include/armadillo_bits/Mat_bones.hpp | 4 inst/include/armadillo_bits/Mat_meat.hpp | 21 - inst/include/armadillo_bits/Row_bones.hpp | 2 inst/include/armadillo_bits/Row_meat.hpp | 1 inst/include/armadillo_bits/arma_cmath.hpp | 2 inst/include/armadillo_bits/arma_version.hpp | 2 inst/include/armadillo_bits/field_bones.hpp | 7 inst/include/armadillo_bits/field_meat.hpp | 57 ++- inst/include/armadillo_bits/fn_eigs_gen.hpp | 263 --------------- inst/include/armadillo_bits/fn_eigs_sym.hpp | 114 ------ inst/include/armadillo_bits/sp_auxlib_bones.hpp | 80 ---- inst/include/armadillo_bits/sp_auxlib_meat.hpp | 404 ++---------------------- inst/tinytest/test_sparseConversion.R | 5 src/RcppArmadillo.cpp | 62 +-- src/RcppExports.cpp | 2 28 files changed, 377 insertions(+), 1060 deletions(-)
Title: Full Pattern Summation of X-Ray Powder Diffraction Data
Description: Full pattern summation of X-ray powder diffraction data as
described in Chipera and Bish (2002) <doi:10.1107/S0021889802017405>.
Derives quantitative estimates of crystalline and amorphous phase
concentrations in complex mixtures.
Author: Benjamin Butler [aut, cre],
Stephen Hillier [aut],
Dylan Beaudette [ctb],
Dennis Eberl [ctb]
Maintainer: Benjamin Butler <benjamin.butler@hutton.ac.uk>
Diff between powdR versions 1.2.3 dated 2020-10-15 and 1.2.4 dated 2020-11-16
DESCRIPTION | 8 ++-- MD5 | 24 ++++++------ NEWS.md | 12 ++++++ R/afps.R | 37 +++++++++++++++++- R/alignment.R | 6 ++- R/create_library.R | 61 +++++++++++++++++++----------- R/fps.R | 29 ++++++++++++-- R/fullpat_shift.R | 3 + R/harmonise.R | 9 +++- R/plotting.R | 9 +++- data/minerals_phases.rda |binary inst/doc/powdR_vignette.html | 86 +++++++++++++++++++++++++++++++++++++------ man/powdRlib.Rd | 6 ++- 13 files changed, 224 insertions(+), 66 deletions(-)
Title: A Fast, Easy-to-Use Tool for Manipulating Tables in Databases
and a Wrapper of MADlib
Description: Provides an R interface for the 'VMware Data Stack' running on
'PostgreSQL' or 'Greenplum' databases with parallel and distributed
computation ability for big data processing. 'PivotalR' provides an R
interface to various database operations on tables or views. These
operations are almost the same as the corresponding native R operations.
Thus users of R do not need to learn 'SQL' when they operate on objects in
the database. It also provides a wrapper for 'Apache MADlib', which is an
open-source library for parallel and scalable in-database analytics.
Author: Predictive Analytics Team at VMware.
<user@madlb.apache.org>
Maintainer: Orhan Kislal <okislal@vmware.com>
Diff between PivotalR versions 0.1.18.3.1 dated 2019-01-05 and 0.1.18.4 dated 2020-11-16
DESCRIPTION | 36 +++++++---------- MD5 | 79 +++++++++++++++++++-------------------- NAMESPACE | 7 +-- R/madlib-arima.R | 2 R/madlib-glm.R | 2 R/madlib-randomForest.R | 57 ++++------------------------ R/madlib-rpart.R | 2 R/method-ops.R | 2 R/utilities.R | 14 +++++- R/utility-madlib.R | 4 - README.md | 26 +++++------- build/vignette.rds |binary data/abalone.RData |binary data/null.data.RData |binary inst/doc/pivotalr.pdf |binary man/abalone.Rd | 2 man/as.db.data.frame-methods.Rd | 2 man/generic.bagging.Rd | 2 man/getTree.rf.madlib.Rd | 29 ++++++-------- man/madlib.arima.Rd | 2 man/madlib.elnet.Rd | 2 man/madlib.glm.Rd | 14 +++--- man/madlib.kmeans.Rd | 2 man/madlib.lda.Rd | 2 man/madlib.lm.Rd | 4 - man/madlib.randomForest.Rd | 5 -- man/madlib.rpart.Rd | 7 +-- man/margins.Rd | 2 man/pivotalr.Rd | 2 man/pkg-package.Rd | 10 ++-- man/plot.dt.madlib.Rd | 5 -- man/predict.dt.madlib.Rd | 2 man/predict.rf.madlib.Rd | 8 +-- man/print.dt.madlib.Rd | 5 -- man/print.rf.madlib.Rd | 13 ++---- man/text.dt.madlib.Rd | 31 +++++++-------- src/adp/Makefile | 2 src/registerDynamicSymbol.c |only tests/testthat/test-examples.r | 27 +------------ tests/testthat/test-madlib_glm.r | 8 +-- vignettes/RJournal.sty | 4 - 41 files changed, 180 insertions(+), 243 deletions(-)
Title: Correct Bias in DNA Methylation Analyses
Description: Implementation of the algorithms (with minor
modifications) to correct bias in quantitative DNA methylation
analyses as described by Moskalev et al. (2011)
<doi:10.1093/nar/gkr213>.
Author: Lorenz A. Kapsner [cre, aut, cph]
(<https://orcid.org/0000-0003-1866-860X>),
Evgeny A. Moskalev [aut]
Maintainer: Lorenz A. Kapsner <lorenz.kapsner@gmail.com>
Diff between rBiasCorrection versions 0.2.3 dated 2020-09-23 and 0.2.4 dated 2020-11-16
DESCRIPTION | 6 MD5 | 14 - R/createbarerrorplots.R | 261 ++++++++++++++--------------- R/plotting_utility.R | 126 +++++++------- R/regression_utility.R | 53 +++-- R/utils.R | 24 +- inst/doc/rBiasCorrection_benchmarking.html | 4 inst/doc/rBiasCorrection_howto.html | 26 +- 8 files changed, 269 insertions(+), 245 deletions(-)
More information about rBiasCorrection at CRAN
Permanent link
Title: Calculate Indices and Theoretical Physicochemical Properties of
Protein Sequences
Description: Includes functions to calculate several physicochemical properties and indices for amino-acid sequences as well as to read and plot 'XVG' output files from the 'GROMACS' molecular dynamics package.
Author: Daniel Osorio [aut, cre] (<https://orcid.org/0000-0003-4424-8422>),
Paola Rondon-Villarreal [aut, ths]
(<https://orcid.org/0000-0001-8209-3885>),
Rodrigo Torres [aut, ths] (<https://orcid.org/0000-0003-1113-3020>),
J. Sebastian Paez [ctb] (<https://orcid.org/0000-0002-0065-1474>),
Luis Pedro Coelho [ctb] (<https://orcid.org/0000-0002-9280-7885>),
Richèl J.C. Bilderbeek [ctb] (<https://orcid.org/0000-0003-1107-7049>),
Florian C. Sigloch [ctb] (<https://orcid.org/0000-0001-8130-6885>)
Maintainer: Daniel Osorio <dcosorioh@tamu.edu>
Diff between Peptides versions 2.4.2 dated 2020-05-10 and 2.4.3 dated 2020-11-16
Peptides-2.4.2/Peptides/man/aacomp.Rd |only Peptides-2.4.2/Peptides/man/aindex.Rd |only Peptides-2.4.2/Peptides/man/instaindex.Rd |only Peptides-2.4.3/Peptides/DESCRIPTION | 38 +++++---- Peptides-2.4.3/Peptides/MD5 | 49 +++++++----- Peptides-2.4.3/Peptides/NAMESPACE | 5 - Peptides-2.4.3/Peptides/R/RcppExports.R | 6 - Peptides-2.4.3/Peptides/R/massShift.R |only Peptides-2.4.3/Peptides/R/mw.R | 14 ++- Peptides-2.4.3/Peptides/R/mz.R |only Peptides-2.4.3/Peptides/R/pI.R | 2 Peptides-2.4.3/Peptides/R/smilesStrings.R |only Peptides-2.4.3/Peptides/README.md | 5 - Peptides-2.4.3/Peptides/inst/include/Peptides_RcppExports.h | 18 ++-- Peptides-2.4.3/Peptides/man/AAdata.Rd | 6 - Peptides-2.4.3/Peptides/man/aIndex.Rd |only Peptides-2.4.3/Peptides/man/aaComp.Rd |only Peptides-2.4.3/Peptides/man/aaList.Rd | 4 Peptides-2.4.3/Peptides/man/aaSMILES.Rd |only Peptides-2.4.3/Peptides/man/charge.Rd | 2 Peptides-2.4.3/Peptides/man/instaIndex.Rd |only Peptides-2.4.3/Peptides/man/massShift.Rd |only Peptides-2.4.3/Peptides/man/mw.Rd | 9 +- Peptides-2.4.3/Peptides/man/mz.Rd |only Peptides-2.4.3/Peptides/man/pI.Rd | 2 Peptides-2.4.3/Peptides/man/pepdata.Rd | 6 - Peptides-2.4.3/Peptides/man/readXVG.Rd | 2 Peptides-2.4.3/Peptides/src/RcppExports.cpp | 30 ++++--- Peptides-2.4.3/Peptides/src/charge_pI.cpp | 11 -- Peptides-2.4.3/Peptides/src/init.c | 14 +-- Peptides-2.4.3/Peptides/tests/testthat/test-SMILES.R |only Peptides-2.4.3/Peptides/tests/testthat/test.massShift.R |only Peptides-2.4.3/Peptides/tests/testthat/test.mz.R |only 33 files changed, 129 insertions(+), 94 deletions(-)
Title: LogNormal Response Time Item Response Theory Models
Description: Allows the simultaneous analysis of responses and response times in an Item Response Theory (IRT) modelling framework. Supports variable person speed functions (intercept, trend, quadratic), and covariates for item and person (random) parameters. Data missing-by-design can be specified. Parameter estimation is done with a MCMC algorithm. LNIRT replaces the package CIRT, which was written by Rinke Klein Entink. For reference, see the paper by Fox, Klein Entink and Van der Linden (2007), "Modeling of Responses and Response Times with the Package cirt", Journal of Statistical Software, <doi:10.18637/jss.v020.i07>.
Author: Jean-Paul Fox, Konrad Klotzke, Rinke Klein Entink
Maintainer: Konrad Klotzke <omd.bms.utwente.stats@gmail.com>
Diff between LNIRT versions 0.4.0 dated 2019-03-31 and 0.5.0 dated 2020-11-16
DESCRIPTION | 10 MD5 | 54 NAMESPACE | 69 - R/AmsterdamChess-data.R |only R/CredentialForm1-data.R |only R/LNIRT.R | 2338 +++++++++++++++++++++++++++--------------- R/LNIRT_Q.R | 655 ++++++++--- R/LNRT.R | 991 +++++++++++------ R/LNRT_Q.R | 398 ++++--- R/MCMC.R | 1241 ++++++++++++---------- R/MCMC_Q.R | 744 +++++++------ R/SUMMARY_LNIRT_Q.R | 1286 ++++++++++++++--------- R/fit.R | 892 +++++++++------- R/fit_Q.R | 147 +- R/init.R |only R/print.R | 2610 +++++++++++++++++++++++++++-------------------- R/simLNIRT.R | 477 ++++---- R/simLNIRT_Q.R | 196 +-- R/summary.R | 704 ++++++++---- R/tools.R | 105 + data |only man/AmsterdamChess.Rd |only man/CredentialForm1.Rd |only man/LNIRT.Rd | 173 +-- man/LNIRTQ.Rd | 67 - man/LNRT.Rd | 112 +- man/LNRTQ.Rd | 49 man/dot-onAttach.Rd |only man/simLNIRT.Rd | 66 - man/simLNIRTQ.Rd | 42 man/summaryIRTQ.Rd | 32 31 files changed, 8198 insertions(+), 5260 deletions(-)
Title: Prediction Error Curves for Risk Prediction Models in Survival
Analysis
Description: Validation of risk predictions obtained from survival models and
competing risk models based on censored data using inverse weighting and
cross-validation. Most of the 'pec' functionality has been moved to 'riskRegression'.
Author: Thomas A. Gerds
Maintainer: Thomas A. Gerds <tag@biostat.ku.dk>
Diff between pec versions 2019.11.03 dated 2019-11-03 and 2020.11.17 dated 2020-11-16
DESCRIPTION | 18 ++++----- MD5 | 72 +++++++++++++++++++-------------------- R/calPlot.R | 3 + R/cindex.R | 5 ++ R/ipcw.R | 4 ++ R/pec.R | 19 +++++++--- R/plotPredictEventProb.R | 2 - R/plotPredictSurvProb.R | 2 - R/predictEventProb.R | 5 -- R/predictEventProb.selectFGR.R | 6 ++- R/predictRestrictedMeanTime.R | 2 - R/predictSurvProb.R | 5 ++ R/predictSurvProb.cforest.R | 8 ++-- R/predictSurvProb.ctree.R | 13 ++++--- R/selectCox.R | 2 - inst/CITATION | 4 +- man/GBSG2.Rd | 6 ++- man/Pbc3.Rd | 6 ++- man/Special.Rd | 16 +++++++- man/calPlot.Rd | 56 ++++++++++++++++++++++++------ man/cindex.Rd | 50 +++++++++++++++++++++------ man/cost.Rd | 6 ++- man/ipcw.Rd | 12 +++++- man/pec.Rd | 62 ++++++++++++++++++++++++++------- man/pecCforest.Rd | 2 - man/pecCtree.Rd | 3 + man/pecRpart.Rd | 2 + man/plot.pec.Rd | 24 ++++++++++--- man/plotPredictEventProb.Rd | 24 ++++++++++--- man/plotPredictSurvProb.Rd | 23 ++++++++++-- man/predictEventProb.Rd | 3 - man/predictRestrictedMeanTime.Rd | 4 +- man/predictSurvProb.Rd | 2 - man/reclass.Rd | 12 +++++- man/selectCox.Rd | 2 - man/selectFGR.Rd | 5 +- man/threecity.Rd | 6 ++- 37 files changed, 350 insertions(+), 146 deletions(-)
Title: Extract Semantic Relations from Text by Querying and Reshaping
Syntax
Description: Various functions for querying and reshaping dependency trees,
as for instance created with the 'spacyr' or 'udpipe' packages.
This enables the automatic extraction of useful semantic relations from texts,
such as quotes (who said what) and clauses (who did what). Method proposed in
Van Atteveldt et al. (2017) <doi:10.1017/pan.2016.12>.
Author: Kasper Welbers and Wouter van Atteveldt
Maintainer: Kasper Welbers <kasperwelbers@gmail.com>
Diff between rsyntax versions 0.1.0 dated 2020-06-02 and 0.1.1 dated 2020-11-16
rsyntax-0.1.0/rsyntax/man/spacy_split_conjunctions.Rd |only rsyntax-0.1.1/rsyntax/DESCRIPTION | 10 rsyntax-0.1.1/rsyntax/MD5 | 77 ++- rsyntax-0.1.1/rsyntax/NAMESPACE | 6 rsyntax-0.1.1/rsyntax/R/annotate.r | 12 rsyntax-0.1.1/rsyntax/R/applied_reshape.r | 68 +-- rsyntax-0.1.1/rsyntax/R/cast_annotations.r |only rsyntax-0.1.1/rsyntax/R/deprecated.r | 2 rsyntax-0.1.1/rsyntax/R/filter_tokens.r | 2 rsyntax-0.1.1/rsyntax/R/find_nodes.r | 91 +++- rsyntax-0.1.1/rsyntax/R/find_quotes.r | 12 rsyntax-0.1.1/rsyntax/R/generic_reshape.r | 12 rsyntax-0.1.1/rsyntax/R/imports.r | 1 rsyntax-0.1.1/rsyntax/R/isolate_branches.r | 27 - rsyntax-0.1.1/rsyntax/R/melt_nodes.r | 3 rsyntax-0.1.1/rsyntax/R/plot_tree.r | 8 rsyntax-0.1.1/rsyntax/R/recursive_search.r | 30 - rsyntax-0.1.1/rsyntax/R/syntax_rules.r | 2 rsyntax-0.1.1/rsyntax/R/tokenbrowser.r | 19 rsyntax-0.1.1/rsyntax/R/tquery.r | 244 +++++++++-- rsyntax-0.1.1/rsyntax/README.md | 378 ++++++++++++------ rsyntax-0.1.1/rsyntax/man/AND.Rd | 2 rsyntax-0.1.1/rsyntax/man/BREAK.Rd |only rsyntax-0.1.1/rsyntax/man/NOT.Rd | 4 rsyntax-0.1.1/rsyntax/man/OR.Rd | 2 rsyntax-0.1.1/rsyntax/man/annotate.Rd | 2 rsyntax-0.1.1/rsyntax/man/annotate_tqueries.Rd | 13 rsyntax-0.1.1/rsyntax/man/cast_text.Rd |only rsyntax-0.1.1/rsyntax/man/chop.Rd | 2 rsyntax-0.1.1/rsyntax/man/climb_tree.Rd | 2 rsyntax-0.1.1/rsyntax/man/copy_nodes.Rd | 2 rsyntax-0.1.1/rsyntax/man/custom_fill.Rd |only rsyntax-0.1.1/rsyntax/man/figures |only rsyntax-0.1.1/rsyntax/man/fill.Rd |only rsyntax-0.1.1/rsyntax/man/isolate_branch.Rd | 2 rsyntax-0.1.1/rsyntax/man/nested_nodes.Rd | 51 +- rsyntax-0.1.1/rsyntax/man/plot_tree.Rd | 6 rsyntax-0.1.1/rsyntax/man/select_nodes.Rd | 5 rsyntax-0.1.1/rsyntax/man/split_UD_conj.Rd |only rsyntax-0.1.1/rsyntax/man/tquery.Rd | 19 rsyntax-0.1.1/rsyntax/tests/testthat/Rplots.pdf |binary rsyntax-0.1.1/rsyntax/tests/testthat/test_alpino.r | 2 rsyntax-0.1.1/rsyntax/tests/testthat/test_corenlp.r | 1 43 files changed, 758 insertions(+), 361 deletions(-)
Title: Analysis and Presentation of Social Scientific Data
Description: This is a collection of tools that the author (Jacob) has written
for the purpose of more efficiently understanding and sharing the results of
(primarily) regression analyses. There are also a number of miscellaneous
functions for statistical and programming purposes. Just about everything
supports models from the survey package.
Author: Jacob A. Long [aut, cre] (<https://orcid.org/0000-0002-1582-6214>)
Maintainer: Jacob A. Long <jacob.long@sc.edu>
Diff between jtools versions 2.1.0 dated 2020-06-23 and 2.1.1 dated 2020-11-16
DESCRIPTION | 12 MD5 | 60 NEWS.md | 2041 ++++++++-------- R/export_summ.R | 1208 ++++----- R/gscale.R | 880 +++--- R/interactions_deps.R | 162 - R/make_predictions.R | 1056 ++++---- R/summ.R | 4776 ++++++++++++++++++------------------- R/svytools.R | 1722 ++++++------- README.md | 1288 +++++----- build/vignette.rds |binary inst/doc/effect_plot.R | 170 - inst/doc/effect_plot.Rmd | 563 ++-- inst/doc/effect_plot.html | 2388 ++++-------------- inst/doc/summ.R | 246 - inst/doc/summ.Rmd | 1052 ++++---- inst/doc/summ.html | 5227 ++++++++++++++++++++--------------------- inst/doc/svycor.R | 100 inst/doc/svycor.Rmd | 276 +- inst/doc/svycor.html | 916 +++---- man/center_mod.Rd | 2 man/gscale.Rd | 6 man/interactions_deprecated.Rd | 2 man/make_predictions.Rd | 4 man/scale_mod.Rd | 2 man/summ.merMod.Rd | 4 man/svycor.Rd | 2 tests/testthat/test-quantreg.R | 122 vignettes/effect_plot.Rmd | 563 ++-- vignettes/summ.Rmd | 1052 ++++---- vignettes/svycor.Rmd | 276 +- 31 files changed, 12560 insertions(+), 13618 deletions(-)
Title: Continuous Norming
Description: Conventional methods for producing standard scores in psychometrics or biometrics
are often plagued with "jumps" or "gaps" (i.e., discontinuities) in norm tables and low
confidence for assessing extreme scores. The continuous norming method introduced by A.
Lenhard et al. (2016, <doi:10.1177/1073191116656437>; 2019, <doi:10.1371/journal.pone.0222279>) and generates continuous test norm
scores on the basis of the raw data from standardization samples, without requiring
assumptions about the distribution of the raw data: Norm scores are directly established
from raw data by modeling the latter ones as a function of both percentile scores and an
explanatory variable (e.g., age). The method minimizes bias arising from sampling and
measurement error, while handling marked deviations from normality, addressing bottom
or ceiling effects and capturing almost all of the variance in the original norm data
sample. An online demonstration is available via <https://cnorm.shinyapps.io/cNORM/>.
Author: Wolfgang Lenhard [cre, aut] (<https://orcid.org/0000-0002-8184-6889>),
Alexandra Lenhard [aut],
Sebastian Gary [aut]
Maintainer: Wolfgang Lenhard <wolfgang.lenhard@uni-wuerzburg.de>
Diff between cNORM versions 1.2.3 dated 2020-06-18 and 1.2.4 dated 2020-11-16
DESCRIPTION | 10 +- MD5 | 34 +++++---- NEWS.md | 16 ++++ R/modelling.R | 93 ++++++++++++++++++++------ R/predict.R | 68 ++++++++++++++++++- README.md | 4 + TODO | 5 + build/vignette.rds |binary inst/doc/cNORM-Demo.html | 74 ++++++++++++++++++++- inst/shiny/server.R | 115 +++++++++++++++++++++++++-------- inst/shiny/ui.R | 27 ++++--- inst/shiny/www/informationFunction.png |only inst/shiny/www/introduction.html | 21 ++++-- inst/shiny/www/plotNorm.png |only inst/shiny/www/plotPercentiles.png |binary man/cnorm.cv.Rd | 28 +++++--- man/epm.Rd | 2 man/normTable.Rd | 12 ++- man/rawTable.Rd | 15 +++- 19 files changed, 420 insertions(+), 104 deletions(-)
Title: Semi-Automatic Analysis of Sound Correspondences
Description: A set of tools that can be used in computer-aided analysis of
sound correspondences between languages, plus several helper functions.
Analytic functions range from purely qualitative analysis, through
statistic methods yielding qualitative results, to an entirely
quantitative approach.
Author: Kamil Stachowski [aut, cre]
Maintainer: Kamil Stachowski <kamil.stachowski@gmail.com>
Diff between soundcorrs versions 0.3.0 dated 2020-09-18 and 0.4.0 dated 2020-11-16
DESCRIPTION | 11 MD5 | 67 NAMESPACE | 6 NEWS | 24 R/gui.R |only R/helpers.R | 242 -- R/soundchange.R | 28 R/soundcorrs.R | 291 ++ R/zzz.R | 5 build/vignette.rds |binary inst/doc/soundcorrs.R | 242 +- inst/doc/soundcorrs.Rmd | 783 +++--- inst/doc/soundcorrs.html | 4089 +++++++++++++++++++++++------------ inst/extdata/change-dl2l.R | 7 inst/extdata/change-palatalization.R | 12 inst/extdata/change-rhotacism.R | 4 inst/extdata/data-capitals.tsv | 16 man/applyChanges.Rd | 34 man/findExamples.Rd | 26 man/findPairs.Rd | 6 man/highlight.Rd |only man/path2name.Rd |only man/print.list.applyChanges.Rd | 15 man/print.soundchange.Rd | 2 man/print.tree.applyChanges.Rd | 14 man/read.soundcorrs.Rd | 5 man/read.transcription.Rd | 8 man/server.Rd |only man/soundchange.Rd | 8 man/soundcorrsGUI.Rd |only man/subset.soundcorrs.Rd | 2 man/summary.soundcorrs.Rd | 2 man/transcription.Rd | 8 man/ui.Rd |only man/ui.data.Rd |only man/ui.examples.Rd |only man/ui.soundchanges.Rd |only man/ui.start.Rd |only man/ui.tables.Rd |only vignettes/soundcorrs.Rmd | 783 +++--- 40 files changed, 4341 insertions(+), 2399 deletions(-)
Title: A Set of Common Tools for Seasonal to Decadal Verification
Description: The advanced version of package 's2dverification'. It is
intended for 'seasonal to decadal' (s2d) climate forecast verification, but
it can also be used in other kinds of forecasts or general climate analysis.
This package is specially designed for the comparison between the experimental
and observational datasets. The functionality of the included functions covers
from data retrieval, data post-processing, skill scores against observation,
to visualization. Compared to 's2dverification', 's2dv' is more compatible
with the package 'startR', able to use multiple cores for computation and
handle multi-dimensional arrays with a higher flexibility.
Author: BSC-CNS [aut, cph],
An-Chi Ho [aut, cre],
Nuria Perez-Zanon [aut],
Roberto Bilbao [ctb],
Carlos Delgado [ctb],
Andrea Manrique [ctb],
Deborah Verfaillie [ctb]
Maintainer: An-Chi Ho <an.ho@bsc.es>
Diff between s2dv versions 0.1.0 dated 2020-11-12 and 0.1.1 dated 2020-11-16
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- NEWS.md | 3 +++ 3 files changed, 9 insertions(+), 6 deletions(-)
Title: Regression-Based Causal Mediation Analysis with an Interaction
Term
Description: 'R' re-implementation of the regression-based causal mediation analysis with a treatment-mediator interaction term, as originally implemented in the 'SAS' macro by Valeri and VanderWeele (2013) <doi:10.1037/a0031034> and Valeri and VanderWeele (2015) <doi:10.1097/EDE.0000000000000253>. Linear and logistic models are supported for the mediator model. Linear, logistic, loglinear, Poisson, negative binomial, Cox, and accelerated failure time (exponential and Weibull) models are supported for the outcome model.
Author: Kazuki Yoshida [cre, aut] (<https://orcid.org/0000-0002-2030-3549>),
Yi Li [ctb, aut] (<https://orcid.org/0000-0002-9359-210X>),
Maya Mathur [ctb] (<https://orcid.org/0000-0001-6698-2607>)
Maintainer: Kazuki Yoshida <kazukiyoshida@mail.harvard.edu>
Diff between regmedint versions 0.1.0 dated 2020-05-11 and 0.2.0 dated 2020-11-16
DESCRIPTION | 13 MD5 | 58 - NAMESPACE | 2 NEWS.md | 7 R/00_package_information.R | 2 R/01_regmedint_class_ui.R | 68 ++ R/06_calc_myreg_helpers_coef.R | 14 build/vignette.rds |binary inst/doc/vig_01_introduction.html | 132 ++-- inst/doc/vig_02_formulas.html | 84 ++ inst/doc/vig_03_bootstrap.html | 275 +++++--- inst/doc/vig_04_mi.html | 314 +++++----- man/beta_hat.Rd | 2 man/calc_myreg.Rd | 2 man/calc_myreg_mreg_linear_yreg_linear.Rd | 2 man/calc_myreg_mreg_linear_yreg_logistic.Rd | 2 man/calc_myreg_mreg_logistic_yreg_linear.Rd | 2 man/calc_myreg_mreg_logistic_yreg_logistic.Rd | 2 man/fit_mreg.Rd | 2 man/fit_yreg.Rd | 2 man/grad_prop_med_yreg_linear.Rd | 6 man/grad_prop_med_yreg_logistic.Rd |only man/new_regmedint.Rd | 2 man/regmedint.Rd | 7 man/report_missing.Rd |only man/theta_hat.Rd | 2 man/validate_args.Rd | 2 tests/reference_results/sas-mreg_logistic_yreg_loglinear_int_f_caco_t_ncvar3.r.txt | 12 tests/reference_results/sas-mreg_logistic_yreg_loglinear_int_t_caco_f_ncvar3.r.txt | 2 tests/reference_results/sas-mreg_logistic_yreg_loglinear_int_t_caco_t_ncvar3.r.txt | 22 tests/testthat/test-01_regmedint_class_ui.R | 202 ++++++ 31 files changed, 853 insertions(+), 389 deletions(-)
Title: Detecting Politeness Features in Text
Description: Detecting markers of politeness in English natural language. This package allows researchers to easily visualize and quantify politeness between groups of documents. This package combines prior research on the linguistic markers of politeness. We thank the Spencer Foundation, the Hewlett Foundation, and Harvard's Institute for Quantitative Social Science for support.
Author: Mike Yeomans, Alejandro Kantor, Dustin Tingley
Maintainer: Mike Yeomans <mk.yeomans@gmail.com>
Diff between politeness versions 0.7.0 dated 2020-10-18 and 0.7.5 dated 2020-11-16
politeness-0.7.0/politeness/data/receptive_model.rdata |only politeness-0.7.0/politeness/man/receptive_model.Rd |only politeness-0.7.5/politeness/DESCRIPTION | 8 politeness-0.7.5/politeness/MD5 | 37 +-- politeness-0.7.5/politeness/R/data.R | 27 +- politeness-0.7.5/politeness/R/politeness.R | 33 ++- politeness-0.7.5/politeness/R/politenessPlot.R | 6 politeness-0.7.5/politeness/R/politenessProjection.R | 4 politeness-0.7.5/politeness/R/receptiveness.R | 15 - politeness-0.7.5/politeness/R/sysdata.rda |binary politeness-0.7.5/politeness/R/textTools.R | 13 + politeness-0.7.5/politeness/data/feature_table.rdata |binary politeness-0.7.5/politeness/data/receptive_train.rdata |only politeness-0.7.5/politeness/data/uk2us.rda |only politeness-0.7.5/politeness/inst/doc/politeness.R | 4 politeness-0.7.5/politeness/inst/doc/politeness.Rmd | 31 ++ politeness-0.7.5/politeness/inst/doc/politeness.html | 180 ++++++++++------- politeness-0.7.5/politeness/man/hedge_list.Rd | 2 politeness-0.7.5/politeness/man/politeness.Rd | 3 politeness-0.7.5/politeness/man/receptive_train.Rd |only politeness-0.7.5/politeness/man/uk2us.Rd |only politeness-0.7.5/politeness/man/usWords.Rd |only politeness-0.7.5/politeness/vignettes/politeness.Rmd | 31 ++ 23 files changed, 257 insertions(+), 137 deletions(-)
Title: Build MultiClass Pair-Based Classifiers using TSPs or RF
Description: A toolbox to train a single sample classifier that uses in-sample feature relationships. The relationships are represented as feature1 < feature2 (e.g. gene1 < gene2). We provide two options to go with. First is based on 'switchBox' package which uses Top-score pairs algorithm. Second is a novel implementation based on random forest algorithm. For simple problems we recommend to use one-vs-rest using TSP option due to its simplicity and for being easy to interpret. For complex problems RF performs better. Both lines filter the features first then combine the filtered features to make the list of all the possible rules (i.e. rule1: feature1 < feature2, rule2: feature1 < feature3, etc...). Then the list of rules will be filtered and the most important and informative rules will be kept. The informative rules will be assembled in an one-vs-rest model or in an RF model. We provide a detailed description with each function in this package to explain the filtration and training methodology in each line.
Author: Nour-al-dain Marzouka
Maintainer: Nour-al-dain Marzouka <Nour-al-dain.Marzouka@med.lu.se>
Diff between multiclassPairs versions 0.3.0 dated 2020-11-10 and 0.3.1 dated 2020-11-16
multiclassPairs-0.3.0/multiclassPairs/vignettes/images/workflow_v0_2_1.png |only multiclassPairs-0.3.1/multiclassPairs/DESCRIPTION | 8 multiclassPairs-0.3.1/multiclassPairs/MD5 | 30 +- multiclassPairs-0.3.1/multiclassPairs/NAMESPACE | 1 multiclassPairs-0.3.1/multiclassPairs/NEWS.md | 9 multiclassPairs-0.3.1/multiclassPairs/R/functions.R | 109 +++++----- multiclassPairs-0.3.1/multiclassPairs/inst/doc/Tutorial.R | 4 multiclassPairs-0.3.1/multiclassPairs/inst/doc/Tutorial.Rmd | 12 - multiclassPairs-0.3.1/multiclassPairs/inst/doc/Tutorial.html | 48 ++-- multiclassPairs-0.3.1/multiclassPairs/man/filter_genes_TSP.Rd | 14 - multiclassPairs-0.3.1/multiclassPairs/man/plot_binary_TSP.Rd | 14 - multiclassPairs-0.3.1/multiclassPairs/man/predict_RF.Rd | 14 + multiclassPairs-0.3.1/multiclassPairs/man/predict_one_vs_rest_TSP.Rd | 14 - multiclassPairs-0.3.1/multiclassPairs/man/train_RF.Rd | 7 multiclassPairs-0.3.1/multiclassPairs/man/train_one_vs_rest_TSP.Rd | 14 - multiclassPairs-0.3.1/multiclassPairs/vignettes/Tutorial.Rmd | 12 - multiclassPairs-0.3.1/multiclassPairs/vignettes/images/workflow_v0_3.png |only 17 files changed, 176 insertions(+), 134 deletions(-)
More information about multiclassPairs at CRAN
Permanent link
Title: Comprehensive Luminescence Dating Data Analysis
Description: A collection of various R functions for the purpose of Luminescence
dating data analysis. This includes, amongst others, data import, export,
application of age models, curve deconvolution, sequence analysis and
plotting of equivalent dose distributions.
Author: Sebastian Kreutzer [aut, trl, cre, dtc]
(<https://orcid.org/0000-0002-0734-2199>),
Christoph Burow [aut, trl, dtc]
(<https://orcid.org/0000-0002-5023-4046>),
Michael Dietze [aut] (<https://orcid.org/0000-0001-6063-1726>),
Margret C. Fuchs [aut],
Christoph Schmidt [aut] (<https://orcid.org/0000-0002-2309-3209>),
Manfred Fischer [aut, trl],
Johannes Friedrich [aut] (<https://orcid.org/0000-0002-0805-9547>),
Norbert Mercier [ctb] (<https://orcid.org/0000-0002-6375-9108>),
Rachel K. Smedley [ctb] (<https://orcid.org/0000-0001-7773-5193>),
Claire Christophe [ctb],
Antoine Zink [ctb] (<https://orcid.org/0000-0001-7146-1101>),
Julie Durcan [ctb] (<https://orcid.org/0000-0001-8724-8022>),
Georgina E. King [ctb, dtc] (<https://orcid.org/0000-0003-1059-8192>),
Anne Philippe [ctb],
Guillaume Guerin [ctb] (<https://orcid.org/0000-0001-6298-5579>),
Svenja Riedesel [aut] (<https://orcid.org/0000-0003-2936-8776>),
Martin Autzen [aut] (<https://orcid.org/0000-0001-6249-426X>),
Pierre Guibert [ctb] (<https://orcid.org/0000-0001-8969-8684>),
Markus Fuchs [ths]
Maintainer: Sebastian Kreutzer <sebastian.kreutzer@aber.ac.uk>
Diff between Luminescence versions 0.9.7 dated 2020-01-08 and 0.9.8 dated 2020-11-16
Luminescence-0.9.7/Luminescence/inst/doc/HowTo_analyse_Al2O3.html |only Luminescence-0.9.7/Luminescence/inst/doc/HowTo_analyse_Al2O3.html.asis |only Luminescence-0.9.7/Luminescence/inst/doc/HowTo_analyse_pIRIRMeasurements.html |only Luminescence-0.9.7/Luminescence/inst/doc/HowTo_analyse_pIRIRMeasurements.html.asis |only Luminescence-0.9.7/Luminescence/vignettes/HowTo_analyse_Al2O3.Rmd |only Luminescence-0.9.7/Luminescence/vignettes/HowTo_analyse_Al2O3.html.asis |only Luminescence-0.9.7/Luminescence/vignettes/HowTo_analyse_pIRIRMeasurements.Rmd |only Luminescence-0.9.7/Luminescence/vignettes/HowTo_analyse_pIRIRMeasurements.html.asis |only Luminescence-0.9.7/Luminescence/vignettes/Tutorial_Analysing_pIRIR_protocol.bib |only Luminescence-0.9.8/Luminescence/DESCRIPTION | 62 - Luminescence-0.9.8/Luminescence/MD5 | 518 +++++----- Luminescence-0.9.8/Luminescence/NAMESPACE | 5 Luminescence-0.9.8/Luminescence/NEWS.md | 402 +++++-- Luminescence-0.9.8/Luminescence/R/Analyse_SAR.OSLdata.R | 2 Luminescence-0.9.8/Luminescence/R/CW2pHMi.R | 2 Luminescence-0.9.8/Luminescence/R/CW2pLM.R | 2 Luminescence-0.9.8/Luminescence/R/CW2pPMi.R | 2 Luminescence-0.9.8/Luminescence/R/Luminescence-package.R | 99 + Luminescence-0.9.8/Luminescence/R/RLum-class.R | 2 Luminescence-0.9.8/Luminescence/R/RLum.Analysis-class.R | 12 Luminescence-0.9.8/Luminescence/R/RLum.Data-class.R | 2 Luminescence-0.9.8/Luminescence/R/RLum.Data.Image-class.R | 2 Luminescence-0.9.8/Luminescence/R/RLum.Data.Spectrum-class.R | 4 Luminescence-0.9.8/Luminescence/R/RLum.Results-class.R | 4 Luminescence-0.9.8/Luminescence/R/RcppExports.R | 4 Luminescence-0.9.8/Luminescence/R/Risoe.BINfileData-class.R | 75 - Luminescence-0.9.8/Luminescence/R/Risoe.BINfileData2RLum.Analysis.R | 55 - Luminescence-0.9.8/Luminescence/R/Risoe.BINfileData2RLum.Data.Curve.R | 2 Luminescence-0.9.8/Luminescence/R/Second2Gray.R | 2 Luminescence-0.9.8/Luminescence/R/analyse_Al2O3C_CrossTalk.R | 4 Luminescence-0.9.8/Luminescence/R/analyse_Al2O3C_ITC.R 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Luminescence-0.9.8/Luminescence/R/merge_RLum.Analysis.R | 2 Luminescence-0.9.8/Luminescence/R/merge_RLum.Data.Curve.R | 2 Luminescence-0.9.8/Luminescence/R/merge_RLum.R | 2 Luminescence-0.9.8/Luminescence/R/merge_RLum.Results.R | 2 Luminescence-0.9.8/Luminescence/R/merge_Risoe.BINfileData.R | 2 Luminescence-0.9.8/Luminescence/R/methods_RLum.R | 19 Luminescence-0.9.8/Luminescence/R/names_RLum.R | 2 Luminescence-0.9.8/Luminescence/R/plot_DRCSummary.R | 2 Luminescence-0.9.8/Luminescence/R/plot_DRTResults.R | 2 Luminescence-0.9.8/Luminescence/R/plot_FilterCombinations.R | 8 Luminescence-0.9.8/Luminescence/R/plot_GrowthCurve.R | 26 Luminescence-0.9.8/Luminescence/R/plot_Histogram.R | 2 Luminescence-0.9.8/Luminescence/R/plot_NRt.R | 20 Luminescence-0.9.8/Luminescence/R/plot_RLum.Analysis.R | 41 Luminescence-0.9.8/Luminescence/R/plot_RLum.Data.Curve.R | 313 ++---- Luminescence-0.9.8/Luminescence/R/plot_RLum.Data.Image.R | 34 Luminescence-0.9.8/Luminescence/R/plot_RLum.Data.Spectrum.R | 10 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Luminescence-0.9.8/Luminescence/man/analyse_portableOSL.Rd | 2 Luminescence-0.9.8/Luminescence/man/app_RLum.Rd | 4 Luminescence-0.9.8/Luminescence/man/apply_CosmicRayRemoval.Rd | 6 Luminescence-0.9.8/Luminescence/man/apply_EfficiencyCorrection.Rd | 2 Luminescence-0.9.8/Luminescence/man/bin_RLum.Data.Rd | 2 Luminescence-0.9.8/Luminescence/man/calc_AliquotSize.Rd | 4 Luminescence-0.9.8/Luminescence/man/calc_AverageDose.Rd | 12 Luminescence-0.9.8/Luminescence/man/calc_CentralDose.Rd | 2 Luminescence-0.9.8/Luminescence/man/calc_CobbleDoseRate.Rd |only Luminescence-0.9.8/Luminescence/man/calc_CommonDose.Rd | 2 Luminescence-0.9.8/Luminescence/man/calc_CosmicDoseRate.Rd | 2 Luminescence-0.9.8/Luminescence/man/calc_FadingCorr.Rd | 4 Luminescence-0.9.8/Luminescence/man/calc_FastRatio.Rd | 2 Luminescence-0.9.8/Luminescence/man/calc_FiniteMixture.Rd | 2 Luminescence-0.9.8/Luminescence/man/calc_FuchsLang2001.Rd | 4 Luminescence-0.9.8/Luminescence/man/calc_HomogeneityTest.Rd | 2 Luminescence-0.9.8/Luminescence/man/calc_Huntley2006.Rd | 4 Luminescence-0.9.8/Luminescence/man/calc_IEU.Rd | 2 Luminescence-0.9.8/Luminescence/man/calc_Kars2008.Rd | 2 Luminescence-0.9.8/Luminescence/man/calc_Lamothe2003.Rd | 19 Luminescence-0.9.8/Luminescence/man/calc_MaxDose.Rd | 2 Luminescence-0.9.8/Luminescence/man/calc_MinDose.Rd | 2 Luminescence-0.9.8/Luminescence/man/calc_OSLLxTxRatio.Rd | 30 Luminescence-0.9.8/Luminescence/man/calc_SourceDoseRate.Rd | 2 Luminescence-0.9.8/Luminescence/man/calc_Statistics.Rd | 2 Luminescence-0.9.8/Luminescence/man/calc_TLLxTxRatio.Rd | 4 Luminescence-0.9.8/Luminescence/man/calc_ThermalLifetime.Rd | 4 Luminescence-0.9.8/Luminescence/man/calc_WodaFuchs2008.Rd | 4 Luminescence-0.9.8/Luminescence/man/calc_gSGC.Rd | 8 Luminescence-0.9.8/Luminescence/man/convert_Activity2Concentration.Rd | 2 Luminescence-0.9.8/Luminescence/man/convert_BIN2CSV.Rd | 4 Luminescence-0.9.8/Luminescence/man/convert_Concentration2DoseRate.Rd |only Luminescence-0.9.8/Luminescence/man/convert_Daybreak2CSV.Rd | 4 Luminescence-0.9.8/Luminescence/man/convert_PSL2CSV.Rd | 4 Luminescence-0.9.8/Luminescence/man/convert_RLum2Risoe.BINfileData.Rd | 4 Luminescence-0.9.8/Luminescence/man/convert_Wavelength2Energy.Rd | 2 Luminescence-0.9.8/Luminescence/man/convert_XSYG2CSV.Rd | 4 Luminescence-0.9.8/Luminescence/man/extdata.Rd | 2 Luminescence-0.9.8/Luminescence/man/extract_IrradiationTimes.Rd | 4 Luminescence-0.9.8/Luminescence/man/fit_CWCurve.Rd | 6 Luminescence-0.9.8/Luminescence/man/fit_LMCurve.Rd | 6 Luminescence-0.9.8/Luminescence/man/fit_OSLLifeTimes.Rd | 12 Luminescence-0.9.8/Luminescence/man/fit_SurfaceExposure.Rd | 2 Luminescence-0.9.8/Luminescence/man/fit_ThermalQuenching.Rd | 2 Luminescence-0.9.8/Luminescence/man/get_Layout.Rd | 2 Luminescence-0.9.8/Luminescence/man/get_Quote.Rd | 10 Luminescence-0.9.8/Luminescence/man/get_RLum.Rd | 2 Luminescence-0.9.8/Luminescence/man/get_Risoe.BINfileData.Rd | 4 Luminescence-0.9.8/Luminescence/man/get_rightAnswer.Rd | 2 Luminescence-0.9.8/Luminescence/man/install_DevelopmentVersion.Rd | 2 Luminescence-0.9.8/Luminescence/man/length_RLum.Rd | 2 Luminescence-0.9.8/Luminescence/man/merge_RLum.Analysis.Rd | 4 Luminescence-0.9.8/Luminescence/man/merge_RLum.Data.Curve.Rd | 4 Luminescence-0.9.8/Luminescence/man/merge_RLum.Rd | 4 Luminescence-0.9.8/Luminescence/man/merge_RLum.Results.Rd | 4 Luminescence-0.9.8/Luminescence/man/merge_Risoe.BINfileData.Rd | 4 Luminescence-0.9.8/Luminescence/man/methods_RLum.Rd | 3 Luminescence-0.9.8/Luminescence/man/names_RLum.Rd | 4 Luminescence-0.9.8/Luminescence/man/plot_AbanicoPlot.Rd | 2 Luminescence-0.9.8/Luminescence/man/plot_DRCSummary.Rd | 4 Luminescence-0.9.8/Luminescence/man/plot_DRTResults.Rd | 4 Luminescence-0.9.8/Luminescence/man/plot_DetPlot.Rd | 2 Luminescence-0.9.8/Luminescence/man/plot_FilterCombinations.Rd | 10 Luminescence-0.9.8/Luminescence/man/plot_GrowthCurve.Rd | 4 Luminescence-0.9.8/Luminescence/man/plot_Histogram.Rd | 4 Luminescence-0.9.8/Luminescence/man/plot_KDE.Rd | 2 Luminescence-0.9.8/Luminescence/man/plot_NRt.Rd | 4 Luminescence-0.9.8/Luminescence/man/plot_RLum.Analysis.Rd | 8 Luminescence-0.9.8/Luminescence/man/plot_RLum.Data.Curve.Rd | 35 Luminescence-0.9.8/Luminescence/man/plot_RLum.Data.Image.Rd | 8 Luminescence-0.9.8/Luminescence/man/plot_RLum.Data.Spectrum.Rd | 12 Luminescence-0.9.8/Luminescence/man/plot_RLum.Rd | 4 Luminescence-0.9.8/Luminescence/man/plot_RLum.Results.Rd | 4 Luminescence-0.9.8/Luminescence/man/plot_ROI.Rd |only Luminescence-0.9.8/Luminescence/man/plot_RadialPlot.Rd | 4 Luminescence-0.9.8/Luminescence/man/plot_Risoe.BINfileData.Rd | 4 Luminescence-0.9.8/Luminescence/man/plot_ViolinPlot.Rd | 15 Luminescence-0.9.8/Luminescence/man/read_BIN2R.Rd | 27 Luminescence-0.9.8/Luminescence/man/read_Daybreak2R.Rd | 4 Luminescence-0.9.8/Luminescence/man/read_PSL2R.Rd | 2 Luminescence-0.9.8/Luminescence/man/read_RF2R.Rd |only Luminescence-0.9.8/Luminescence/man/read_SPE2R.Rd | 14 Luminescence-0.9.8/Luminescence/man/read_XSYG2R.Rd | 14 Luminescence-0.9.8/Luminescence/man/replicate_RLum.Rd | 4 Luminescence-0.9.8/Luminescence/man/report_RLum.Rd | 25 Luminescence-0.9.8/Luminescence/man/sTeve.Rd | 2 Luminescence-0.9.8/Luminescence/man/scale_GammaDose.Rd | 24 Luminescence-0.9.8/Luminescence/man/set_RLum.Rd | 4 Luminescence-0.9.8/Luminescence/man/set_Risoe.BINfileData.Rd | 4 Luminescence-0.9.8/Luminescence/man/smooth_RLum.Rd | 6 Luminescence-0.9.8/Luminescence/man/structure_RLum.Rd | 4 Luminescence-0.9.8/Luminescence/man/template_DRAC.Rd | 6 Luminescence-0.9.8/Luminescence/man/tune_Data.Rd | 2 Luminescence-0.9.8/Luminescence/man/use_DRAC.Rd | 4 Luminescence-0.9.8/Luminescence/man/verify_SingleGrainData.Rd | 12 Luminescence-0.9.8/Luminescence/man/write_R2BIN.Rd | 16 Luminescence-0.9.8/Luminescence/man/write_RLum2CSV.Rd | 4 Luminescence-0.9.8/Luminescence/src/Makevars |only Luminescence-0.9.8/Luminescence/src/Makevars.win |only Luminescence-0.9.8/Luminescence/src/RcppExports.cpp | 23 Luminescence-0.9.8/Luminescence/src/create_UID.cpp | 8 Luminescence-0.9.8/Luminescence/src/src_EED_Calc_Overall_StatUncertainty.cpp |only Luminescence-0.9.8/Luminescence/src/src_analyse_IRSARRF_SRS.cpp | 196 +-- Luminescence-0.9.8/Luminescence/src/src_create_RLumDataCurve_matrix.cpp | 4 Luminescence-0.9.8/Luminescence/src/src_get_XSYG_curve_values.cpp | 4 Luminescence-0.9.8/Luminescence/tests/spelling.R |only Luminescence-0.9.8/Luminescence/tests/testthat/test_RisoeBINfileData-class.R | 4 Luminescence-0.9.8/Luminescence/tests/testthat/test_analyse_IRSARRF.R | 45 Luminescence-0.9.8/Luminescence/tests/testthat/test_analyse_SARCWOSL.R | 138 ++ Luminescence-0.9.8/Luminescence/tests/testthat/test_calc_CobbeDoseRate.R |only Luminescence-0.9.8/Luminescence/tests/testthat/test_convert_Concentration2DoseRate.R |only Luminescence-0.9.8/Luminescence/tests/testthat/test_convert_RLum2Risoe.BINfileData.R | 1 Luminescence-0.9.8/Luminescence/tests/testthat/test_plot_RLum.Analysis.R | 37 Luminescence-0.9.8/Luminescence/tests/testthat/test_plot_RLum.Data.Curve.R |only Luminescence-0.9.8/Luminescence/tests/testthat/test_read_RF2R.R |only Luminescence-0.9.8/Luminescence/tests/testthat/test_report_RLum.R | 9 275 files changed, 2667 insertions(+), 2164 deletions(-)
Title: Joint Analysis and Imputation of Incomplete Data
Description: Joint analysis and imputation of incomplete data in the Bayesian
framework, using (generalized) linear (mixed) models and extensions there of,
survival models, or joint models for longitudinal and survival data.
Incomplete covariates, if present, are automatically imputed.
The package performs some preprocessing of the data and creates a 'JAGS'
model, which will then automatically be passed to 'JAGS'
<http://mcmc-jags.sourceforge.net/> with the help of
the package 'rjags'.
Author: Nicole S. Erler [aut, cre] (<https://orcid.org/0000-0002-9370-6832>)
Maintainer: Nicole S. Erler <n.erler@erasmusmc.nl>
Diff between JointAI versions 1.0.0 dated 2020-08-31 and 1.0.1 dated 2020-11-16
DESCRIPTION | 6 MD5 | 65 NAMESPACE | 3 NEWS.md | 20 R/JointAI.R | 1 R/add_samples.R | 1 R/extract_state.R |only R/get_data_list.R | 5 R/get_model_info.R | 31 R/helpfunctions.R | 8 R/helpfunctions_JAGS.R | 3 R/helpfunctions_ranefs.R | 23 R/list_models.R | 2 R/model_imp.R | 5 R/parameters.R | 60 R/predict.R | 254 +- R/summary.JointAI.R | 3 build/JointAI.pdf |binary build/vignette.rds |binary inst/doc/AfterFitting.html | 748 ++++--- inst/doc/MCMCsettings.html | 393 ++-- inst/doc/ModelSpecification.html | 926 +++++---- inst/doc/SelectingParameters.html | 936 +++++----- man/extract_state.Rd |only man/figures/JointAI_191.png |only man/model_imp.Rd | 5 man/parameters.Rd | 5 man/predDF.Rd | 6 man/predict.JointAI.Rd | 6 man/summary.JointAI.Rd | 4 tests/testthat/test-clmm.R | 3 tests/testthat/test-glmm.R | 3 tests/testthat/testout/CLMM_Models_lapply.models.jagsmodel..txt | 2 tests/testthat/testout/GLMM_lapply.models.data_list..rds |binary tests/testthat/testout/GLMM_lapply.models.jagsmodel..txt | 20 35 files changed, 1943 insertions(+), 1604 deletions(-)
Title: Measuring Concreteness in Natural Language
Description: Models for detecting concreteness in natural language. This package is built in support of Yeomans (2020) <doi:10.17605/OSF.IO/DYZN6>, which reviews linguistic models of concreteness in several domains. Here, we provide an implementation of the best-performing domain-general model (from Brysbaert et al., (2014) <doi:10.3758/s13428-013-0403-5>) as well as two pre-trained models for the feedback and plan-making domains.
Author: Mike Yeomans
Maintainer: Mike Yeomans <mk.yeomans@gmail.com>
Diff between doc2concrete versions 0.4.6 dated 2020-06-19 and 0.5.0 dated 2020-11-16
DESCRIPTION | 10 +- MD5 | 23 +++--- NAMESPACE | 1 R/data.R | 9 ++ R/doc2concrete.R | 11 ++- R/ngramComponents.R | 13 +++ R/ngramTokens.R | 18 ++++- build/vignette.rds |binary data/uk2us.rda |only inst/doc/doc2concrete.html | 154 +++++++++++++++++++++++++++++++++++---------- man/doc2concrete.Rd | 3 man/ngramTokens.Rd | 15 ++++ man/uk2us.Rd |only man/usWords.Rd |only 14 files changed, 204 insertions(+), 53 deletions(-)
More information about ShinyQuickStarter at CRAN
Permanent link
Title: Read Untidy Excel Files
Description: Imports non-tabular from Excel files into R. Exposes cell content,
position and formatting in a tidy structure for further manipulation.
Tokenizes Excel formulas. Supports '.xlsx' and '.xlsm' via the embedded
'RapidXML' C++ library <http://rapidxml.sourceforge.net>. Does not support
'.xlsb' or '.xls'.
Author: Duncan Garmonsway [aut, cre],
Hadley Wickham [ctb] (Author of included readxl fragments),
Jenny Bryan [ctb] (Author of included readxl fragments),
RStudio [cph] (Copyright holder of included readxl fragments),
Marcin Kalicinski [ctb, cph] (Author of included RapidXML code)
Maintainer: Duncan Garmonsway <nacnudus@gmail.com>
Diff between tidyxl versions 1.0.6 dated 2020-05-09 and 1.0.7 dated 2020-11-16
DESCRIPTION | 10 MD5 | 48 +-- NEWS.md | 7 R/data.R | 4 README.md | 155 +++++------ build/vignette.rds |binary inst/doc/data-validation-rules.html | 456 ++++++++++++++++++-------------- inst/doc/smells.Rmd | 6 inst/doc/smells.html | 180 ++++++++---- inst/doc/tidyxl.Rmd | 12 inst/doc/tidyxl.html | 490 +++++++++++++++++++---------------- man/excel_functions.Rd | 2 man/tidyxl.Rd | 18 - man/xlsx_cells.Rd | 10 man/xlsx_names.Rd | 4 src/ref_grammar.h | 2 src/string.h | 4 src/token_grammar.h | 2 src/xlsxbook.cpp | 2 src/xlsxcell.cpp | 2 tests/testthat/test-compatibility.R | 2 tests/testthat/test-inline-strings.R | 2 tests/testthat/test-richtext.R | 2 vignettes/smells.Rmd | 6 vignettes/tidyxl.Rmd | 12 25 files changed, 792 insertions(+), 646 deletions(-)
Title: KMunicate-Style Kaplan–Meier Plots
Description: Produce Kaplan–Meier plots in the style recommended following the KMunicate
study by Morris et al. (2019) <doi:10.1136/bmjopen-2019-030215>. The KMunicate style
consists of Kaplan-Meier curves with confidence intervals to quantify uncertainty and
an extended risk table (per treatment arm) depicting the number of study subjects at
risk, events, and censored observations over time. The resulting plots are built using
'ggplot2' and can be further customised to a certain extent, including themes, fonts, and
colour scales.
Author: Alessandro Gasparini [aut, cre, cph]
(<https://orcid.org/0000-0002-8319-7624>),
Ary Serpa Neto [ctb]
Maintainer: Alessandro Gasparini <alessandro.gasparini@ki.se>
Diff between KMunicate versions 0.1.0 dated 2020-09-03 and 0.2.0 dated 2020-11-16
DESCRIPTION | 16 +- MD5 | 30 ++--- NEWS.md | 9 + R/KMunicate.R | 48 +++++++- README.md | 96 ++++++++++------- build/partial.rdb |binary build/vignette.rds |binary data/brcancer.rda |binary data/cancer2.rda |binary inst/doc/KMunicate.R | 37 ++++++ inst/doc/KMunicate.Rmd | 54 +++++++++ inst/doc/KMunicate.html | 237 +++++++++++++++++++++++++++---------------- man/KMunicate.Rd | 18 ++- tests/testthat/test-checks.R | 43 +++++++ tests/testthat/test-output.R | 14 ++ vignettes/KMunicate.Rmd | 54 +++++++++ 16 files changed, 497 insertions(+), 159 deletions(-)
Title: Miscellaneous R Functions and Aliases
Description: Provides utility functions for, and drawing on, the 'data.table' package. The package also collates useful miscellaneous functions extending base R not available elsewhere. The name is a portmanteau of 'utils' and the author.
Author: Hugh Parsonage [aut, cre],
Michael Frasco [ctb],
Ben Hamner [ctb]
Maintainer: Hugh Parsonage <hugh.parsonage@gmail.com>
Diff between hutils versions 1.5.1 dated 2019-10-05 and 1.6.0 dated 2020-11-16
hutils-1.5.1/hutils/R/utils-anyNA.R |only hutils-1.6.0/hutils/DESCRIPTION | 20 hutils-1.6.0/hutils/MD5 | 54 hutils-1.6.0/hutils/NAMESPACE | 8 hutils-1.6.0/hutils/NEWS.md | 29 hutils-1.6.0/hutils/R/bearing.R | 104 + hutils-1.6.0/hutils/R/find_pattern.R | 43 hutils-1.6.0/hutils/R/prohibit_unequal_length_vectors.R |only hutils-1.6.0/hutils/R/prohibit_vector_recycling.R |only hutils-1.6.0/hutils/R/replace_pattern_in.R | 4 hutils-1.6.0/hutils/build/vignette.rds |binary hutils-1.6.0/hutils/inst/doc/hutils.R | 70 - hutils-1.6.0/hutils/inst/doc/hutils.html | 772 ++++++------- hutils-1.6.0/hutils/man/ahull.Rd | 11 hutils-1.6.0/hutils/man/any_grepl.Rd | 10 hutils-1.6.0/hutils/man/bearing.Rd |only hutils-1.6.0/hutils/man/dir2.Rd | 16 hutils-1.6.0/hutils/man/duplicated_rows.Rd | 10 hutils-1.6.0/hutils/man/find_pattern_in.Rd | 32 hutils-1.6.0/hutils/man/longest_affix.Rd | 12 hutils-1.6.0/hutils/man/mutate_ntile.Rd | 15 hutils-1.6.0/hutils/man/mutate_other.Rd | 13 hutils-1.6.0/hutils/man/prohibit_unequal_length_vectors.Rd |only hutils-1.6.0/hutils/man/prohibit_vector_recycling.Rd |only hutils-1.6.0/hutils/man/replace_pattern_in.Rd | 21 hutils-1.6.0/hutils/man/report_error.Rd | 11 hutils-1.6.0/hutils/man/samp.Rd | 3 hutils-1.6.0/hutils/man/select_grep.Rd | 15 hutils-1.6.0/hutils/man/weight2rows.Rd | 3 hutils-1.6.0/hutils/tests/testthat/test-prohibit_vector.R |only hutils-1.6.0/hutils/tests/testthat/test_1-6-0_bearing.R |only hutils-1.6.0/hutils/tests/testthat/test_find_pattern_in.R | 24 32 files changed, 782 insertions(+), 518 deletions(-)
Title: An Implementation of Grammar of Graphics for Graphs and Networks
Description: The grammar of graphics as implemented in ggplot2 is a poor fit for
graph and network visualizations due to its reliance on tabular data input.
ggraph is an extension of the ggplot2 API tailored to graph visualizations
and provides the same flexible approach to building up plots layer by layer.
Author: Thomas Lin Pedersen [cre, aut]
(<https://orcid.org/0000-0002-5147-4711>),
RStudio [cph]
Maintainer: Thomas Lin Pedersen <thomasp85@gmail.com>
Diff between ggraph versions 2.0.3 dated 2020-05-20 and 2.0.4 dated 2020-11-16
DESCRIPTION | 12 MD5 | 130 +++++----- NAMESPACE | 1 NEWS.md | 21 + R/aaa.R | 7 R/data_flare.R | 2 R/data_whigs.R | 2 R/facet_edges.R | 6 R/facet_graph.R | 13 - R/facet_nodes.R | 6 R/geom_conn_bundle.R | 2 R/geom_edge.R | 24 + R/layout.R | 5 R/layout_backbone.R | 1 R/layout_centrality.R | 1 R/layout_circlepack.R | 1 R/layout_dendrogram.R | 5 R/layout_eigen.R | 1 R/layout_fabric.R | 1 R/layout_focus.R | 1 R/layout_hive.R | 12 R/layout_igraph.R | 4 R/layout_linear.R | 1 R/layout_manual.R | 3 R/layout_matrix.R | 3 R/layout_partition.R | 1 R/layout_pmds.R | 1 R/layout_stress.R | 2 R/layout_treemap.R | 3 R/layout_unrooted.R | 1 R/tbl_graph.R | 12 README.md | 20 - build/vignette.rds |binary inst/doc/Edges.html | 387 +++++++++++++++++++------------ inst/doc/Layouts.R | 5 inst/doc/Layouts.Rmd | 5 inst/doc/Layouts.html | 161 ++++++++++-- inst/doc/Nodes.html | 119 ++++++++- inst/doc/tidygraph.html | 143 +++++++++-- man/facet_edges.Rd | 4 man/facet_graph.Rd | 4 man/facet_nodes.Rd | 4 man/figures/README-unnamed-chunk-2-1.png |binary man/flare.Rd | 8 man/geom_conn_bundle.Rd | 2 man/geom_node_arc_bar.Rd | 6 man/geom_node_circle.Rd | 6 man/geom_node_text.Rd | 2 man/geom_node_voronoi.Rd | 12 man/geometry.Rd | 2 man/guide_edge_colourbar.Rd | 4 man/guide_edge_direction.Rd | 2 man/highschool.Rd | 6 man/layout_tbl_graph_igraph.Rd | 34 +- man/layout_tbl_graph_matrix.Rd | 2 man/layout_tbl_graph_treemap.Rd | 2 man/reexports.Rd | 2 man/scale_edge_colour.Rd | 10 man/scale_edge_fill.Rd | 10 man/scale_edge_linetype.Rd | 10 man/scale_edge_shape.Rd | 14 - man/scale_edge_size.Rd | 6 man/scale_edge_width.Rd | 8 man/scale_label_size.Rd | 6 man/whigs.Rd | 8 vignettes/Layouts.Rmd | 5 66 files changed, 911 insertions(+), 393 deletions(-)
Title: Generalized Pathmox Approach Segmentation Tree Analysis
Description: Provides a very interesting solution for
handling segmentation variables in complex statistical methodology. It
contains en extended version of the "Pathmox" algorithm (Lamberti, Sanchez
and Aluja,(2016)<doi:10.1002/asmb.2168>) in the context of
Partial Least Squares Path Modeling including the F-block
test (to detect the responsible latent endogenous equations of the
difference), the F-coefficient (to detect the path coefficients responsible
of the difference) and the "invariance" test (to realize a comparison
between the sub-models' latent variables). Furthermore, the package
contains a generalized version of the "Pathmox" algorithm to approach
different methodologies: linear regression and least absolute regression
models.
Author: Giuseppe Lamberti [aut, cre]
Maintainer: Giuseppe Lamberti <giuseppelamb@hotmail.com>
Diff between genpathmox versions 0.4 dated 2020-05-11 and 0.5 dated 2020-11-16
DESCRIPTION | 10 - MD5 | 28 ++--- NAMESPACE | 1 R/1_fun_blockdiag.R | 2 R/27_fun_pls.pathmox.R | 228 ++++++++++++++++++++++++++---------------- R/29_fun_pls.treemodel.R | 95 +++++------------ R/30_fun_invariance_test.R | 12 -- R/43_fun_reg.pathmox.R | 6 - R/print_print.xtree.pls.R | 8 - R/summary_summary.xtree.pls.R | 8 - man/invariance_test.Rd | 12 -- man/pls.pathmox.Rd | 86 ++++++++++----- man/pls.treemodel.Rd | 33 +----- man/print.xtree.pls.Rd | 8 - man/summary.xtree.pls.Rd | 8 - 15 files changed, 277 insertions(+), 268 deletions(-)
More information about geneExpressionFromGEO at CRAN
Permanent link
Title: Clustering of Datasets
Description: Hierarchical and partitioning algorithms of blocks of variables. The partitioning algorithm includes an option called noise cluster to set aside atypical blocks of variables. The CLUSTATIS method (for quantitative blocks) (Llobell, Cariou, Vigneau, Labenne & Qannari (2020) <doi:10.1016/j.foodqual.2018.05.013>, Llobell, Vigneau & Qannari (2019) <doi:10.1016/j.foodqual.2019.02.017>) and the CLUSCATA method (for Check-All-That-Apply data) (Llobell, Cariou, Vigneau, Labenne & Qannari (2019) <doi:10.1016/j.foodqual.2018.09.006>, Llobell, Giacalone, Labenne & Qannari (2019) <doi:10.1016/j.foodqual.2019.05.017>) are the core of this package.
Author: Fabien Llobell [aut, cre] (Oniris/XLSTAT),
Evelyne Vigneau [ctb] (Oniris),
Veronique Cariou [ctb] (Oniris),
El Mostafa Qannari [ctb] (Oniris)
Maintainer: Fabien Llobell <fllobell@hotmail.fr>
Diff between ClustBlock versions 2.2.1 dated 2020-10-02 and 2.3.0 dated 2020-11-16
DESCRIPTION | 8 +++--- MD5 | 44 +++++++++++++++++----------------- NEWS | 4 +-- R/catatis.R | 18 +++++++------- R/cluscata.R | 38 ++++++++++++----------------- R/cluscata_kmeans.R | 44 ++++++++++++++++++++-------------- R/clustatis.R | 29 ++++++++-------------- R/clustatis_FreeSort_kmeans.R | 6 ++-- R/clustatis_kmeans.R | 28 ++++++++++----------- R/consistency_cata.R | 4 +-- R/consistency_cata_panel.R | 6 ++-- R/crit_cataXj.R | 18 +++----------- R/crit_cataXj_fast.R |only R/crit_statisWj.R | 17 +++---------- R/crit_statisWj_fast.R |only R/one_cluster_or_more.R | 4 +-- R/statis.R | 50 ++++++++++++++------------------------- R/vp_rv_Wi.R | 2 - R/vp_s.R | 2 - inst/CITATION | 4 +-- man/cluscata.Rd | 4 ++- man/cluscata_kmeans.Rd | 10 ++++--- man/clustatis_FreeSort_kmeans.Rd | 4 +-- man/clustatis_kmeans.Rd | 4 +-- 24 files changed, 158 insertions(+), 190 deletions(-)
Title: Star Trek Color Palettes
Description: Provides a dataset of predefined color palettes based on the Star Trek science fiction series, associated color palette functions,
and additional functions for generating customized palettes that are on theme. The package also offers functions for applying
the palettes to plots made using the 'ggplot2' package.
Author: Matthew Leonawicz [aut, cre] (<https://orcid.org/0000-0001-9452-2771>)
Maintainer: Matthew Leonawicz <matt_leonawicz@esource.com>
Diff between trekcolors versions 0.1.1 dated 2019-10-16 and 0.1.2 dated 2020-11-16
DESCRIPTION | 8 - MD5 | 46 ++++----- NEWS.md | 4 README.md | 198 ++++++++++++++++++++++++++++++++----------- inst/WORDLIST | 8 + man/figures/README-ex3-1.png |binary man/figures/README-ex3-2.png |binary man/figures/README-ex3-3.png |binary man/figures/README-ex3-4.png |binary man/figures/README-ex3-5.png |binary man/figures/README-ex3-6.png |binary man/figures/README-ex3-7.png |binary man/figures/README-ex3-8.png |binary man/figures/README-ex3-9.png |binary man/figures/README-ex5-1.png |binary man/figures/README-ex5-2.png |binary man/figures/README-ex5-3.png |binary man/figures/logo.png |binary man/lcars_colors.Rd | 80 ++++++++--------- man/lcars_pals.Rd | 106 +++++++++++------------ man/scale_lcars.Rd | 144 +++++++++++++++++-------------- man/scale_trek.Rd | 72 +++++++-------- man/trek_pal.Rd | 78 ++++++++-------- man/trekpals.Rd | 4 24 files changed, 441 insertions(+), 307 deletions(-)
Title: Missing Item Responses Imputation for Test and Assessment Data
Description: Functions for imputing missing item responses for dichotomous and
polytomous test and assessment data. This package enables missing imputation
methods that are suitable for test and assessment data, including:
listwise (LW) deletion (see De Ayala et al. 2001 <doi:10.1111/j.1745-3984.2001.tb01124.x>),
treating as incorrect (IN, see Lord, 1974 <doi: 10.1111/j.1745-3984.1974.tb00996.x>;
Mislevy & Wu, 1996 <doi: 10.1002/j.2333-8504.1996.tb01708.x>;
Pohl et al., 2014 <doi: 10.1177/0013164413504926>), person mean imputation (PM), item mean
imputation (IM), two-way imputation (TW, see Sijtsma & van der Ark, 2003 <doi: 10.1207/s15327906mbr3804_4>),
logistic regression imputation (LR), and expectation–maximization (EM)
imputation (see Finch, 2008 <doi: 10.1111/j.1745-3984.2008.00062.x>).
Author: Shenghai Dai [aut, cre],
Xiaolin Wang [aut],
Dubravka Svetina [aut]
Maintainer: Shenghai Dai <s.dai@wsu.edu>
Diff between TestDataImputation versions 1.1 dated 2019-03-08 and 1.2 dated 2020-11-16
DESCRIPTION | 22 +++++++----- MD5 | 34 +++++++++--------- NAMESPACE | 7 ++- R/EMimpute.r | 24 ++++++++----- R/ImputeTestData.r | 91 +++++++++++++++++++++++++++++++++++--------------- R/ItemMean.r | 11 +++--- R/Listwise.r | 12 +++++- R/LogisticReg.r | 10 ++--- R/PersonMean.r | 15 ++++---- R/TreatIncorrect.r | 22 ++++++++++-- R/TwoWay.r | 15 ++++---- man/EMimpute.Rd | 16 +++++++- man/ImputeTestData.Rd | 68 +++++++++++++++++++++++++++++++------ man/ItemMean.Rd | 6 ++- man/Listwise.Rd | 12 +++++- man/PersonMean.Rd | 10 +++-- man/TreatIncorrect.Rd | 24 ++++++++++++- man/Twoway.Rd | 10 +++-- 18 files changed, 290 insertions(+), 119 deletions(-)
More information about TestDataImputation at CRAN
Permanent link
Title: Datasets and Functions Relating to Star Trek
Description: Provides datasets related to the Star Trek fictional universe and functions for working with the data.
The package also provides access to real world datasets based on the televised series and other related licensed media productions.
It interfaces with the Star Trek API (STAPI) (<http://stapi.co/>),
Memory Alpha (<https://memory-alpha.fandom.com/wiki/Portal:Main>), and Memory Beta (<https://memory-beta.fandom.com/wiki/Main_Page>)
to retrieve data, metadata and other information relating to Star Trek.
It also contains several local datasets covering a variety of topics.
The package also provides functions for working with data from other Star Trek-related
R data packages containing larger datasets not stored in 'rtrek'.
Author: Matthew Leonawicz [aut, cre] (<https://orcid.org/0000-0001-9452-2771>)
Maintainer: Matthew Leonawicz <matt_leonawicz@esource.com>
Diff between rtrek versions 0.3.0 dated 2019-12-15 and 0.3.2 dated 2020-11-16
DESCRIPTION | 10 ++-- MD5 | 60 +++++++++++++-------------- NAMESPACE | 2 NEWS.md | 9 ++++ R/api.R | 5 -- R/ma_support.R | 5 +- R/mb_support.R | 3 - R/mb_timeline.R | 2 R/memory_alpha.R | 18 +++----- R/memory_beta.R | 27 ++++-------- R/tiles.R | 4 + README.md | 82 ++++++++++++++++++++++++++++--------- data/stSpecies.rda |binary inst/WORDLIST | 45 +++++++++----------- man/mb_timeline.Rd | 2 man/memory_alpha.Rd | 4 - man/memory_beta.Rd | 11 +--- man/pipe.Rd | 22 ++++----- man/stBooks.Rd | 4 + man/stGeo.Rd | 28 ++++++------ man/stLogos.Rd | 36 ++++++++-------- man/stSeries.Rd | 4 + man/stSpecies.Rd | 28 ++++++------ man/stTiles.Rd | 28 ++++++------ man/st_datasets.Rd | 32 +++++++------- man/stapiEntities.Rd | 4 + man/tlBooks.Rd | 4 + man/tlEvents.Rd | 4 + man/tlFootnotes.Rd | 34 ++++++++------- tests/testthat/test-memory-alpha.R | 9 ++++ tests/testthat/test-memory-beta.R | 16 ++++++- 31 files changed, 313 insertions(+), 229 deletions(-)
Title: 'RStudio' Addins to Prettify 'JavaScript', 'C++', 'Python', and
More
Description: Provides 'RStudio' addins to prettify 'HTML', 'CSS', 'SCSS', 'JavaScript', 'JSX', 'Markdown', 'C(++)', 'LaTeX', 'Python', 'Julia', 'XML', 'Java', 'JSON', 'Ruby', and to reindent 'C(++)', 'Fortran', 'Java', 'Julia', 'Python', 'SAS', 'Scala', 'Shell' and 'SQL'. Two kinds of addins are provided: 'Prettify' and 'Indent'. The 'Indent' addins only reindent the code, while the 'Prettify' addins also modify the code, e.g. trailing semi-colons are added to 'JavaScript' code when they are missing.
Author: Stéphane Laurent [aut, cre],
James Long and contributors [ctb, cph] ('Prettier' library),
Zeb Zhao [ctb, cph] ('indent.js' library),
Marijn Haverbeke [ctb, cph] ('CodeMirror' library)
Maintainer: Stéphane Laurent <laurent_step@outlook.fr>
Diff between prettifyAddins versions 2.0.2 dated 2020-11-09 and 2.0.3 dated 2020-11-16
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- NEWS.md | 5 +++++ R/prettify_V8.R | 4 ++-- man/prettify_V8.Rd | 2 +- man/reindent_V8.Rd | 2 +- 6 files changed, 17 insertions(+), 12 deletions(-)
More information about prettifyAddins at CRAN
Permanent link
Title: Validation of Arguments and Objects in User-Defined Functions
Description: Utility functions that implement and automate common sets of validation tasks.
These functions are particularly useful to validate inputs, intermediate objects and output
values in user-defined functions, resulting in tidier and less verbose functions.
Author: Pedro Fonseca [aut, cre] (<https://orcid.org/0000-0002-5708-081X>),
FCT [fnd]
Maintainer: Pedro Fonseca <pedro.teles.fonseca@phd.iseg.ulisboa.pt>
Diff between inspector versions 1.0.1 dated 2020-09-16 and 1.0.2 dated 2020-11-16
DESCRIPTION | 12 ++++++------ MD5 | 12 ++++++------ NEWS.md | 6 +++++- R/inspector.R | 2 +- README.md | 28 ++++++++++++++-------------- inst/CITATION | 6 +++--- man/inspector-package.Rd | 8 ++++---- 7 files changed, 39 insertions(+), 35 deletions(-)
Title: Easily Apply Formats to Data
Description: Contains a set of functions that can be used to apply
formats to data frames or vectors. The package aims to provide to
functionality similar to that of SAS® formats. Formats are assigned to
the format attribute on data frame columns. Then when the fdata()
function is called, a new data frame is created with the column data
formatted as specified. The package also contains a value() function
to create a user-defined format, similar to a SAS® user-defined format.
Author: David Bosak
Maintainer: David Bosak <dbosak01@gmail.com>
Diff between fmtr versions 1.2.2 dated 2020-10-10 and 1.3.0 dated 2020-11-16
DESCRIPTION | 6 +- MD5 | 55 +++++++++++--------- NAMESPACE | 6 ++ NEWS.md | 10 +++ R/descriptions.R |only R/fattr.R | 18 ++++++ R/fcat.R | 46 ++++++++++++++++- R/flist.R | 98 ++++++++++++++++++++++++++++++++----- R/fmt.R | 13 +++- R/justification.R | 4 - R/widths.R | 2 build/vignette.rds |binary inst/doc/fmtr-vignette.html | 41 +++++++++++++++ man/as.data.frame.fmt_lst.Rd | 24 +++++---- man/as.flist.Rd | 69 ++++++++++++++++++++------ man/as.flist.data.frame.Rd |only man/as.flist.fcat.Rd |only man/as.flist.list.Rd |only man/as.flist.tbl_df.Rd |only man/descriptions.Rd |only man/fattr-set.Rd | 3 - man/fattr.Rd | 18 ++++++ man/flist.Rd | 4 + man/is.flist.Rd | 4 + man/justification.Rd | 4 - man/print.fmt_lst.Rd | 4 + man/widths.Rd | 2 tests/testthat/test-descriptions.R |only tests/testthat/test-fattr.R | 14 +++-- tests/testthat/test-fcat.R | 35 ++++++++++++- tests/testthat/test-flist.R | 20 +++++++ tests/testthat/test-fmt.R | 23 ++++++++ 32 files changed, 438 insertions(+), 85 deletions(-)
Title: Find Pattern in Files
Description: Creates a HTML widget which displays the results of searching for a pattern in files in a given folder. The results can be viewed in the 'RStudio' viewer pane, included in a 'R Markdown' document or in a 'Shiny' app.
Author: Stéphane Laurent [aut, cre],
Rob Burns [ctb, cph] ('ansi-to-html' library)
Maintainer: Stéphane Laurent <laurent_step@outlook.fr>
Diff between findInFiles versions 0.1.1 dated 2020-10-23 and 0.1.2 dated 2020-11-16
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 5 +++++ R/findInFiles.R | 4 ++-- R/grepInFiles.R | 19 +++++++++++++++---- 5 files changed, 29 insertions(+), 13 deletions(-)
Title: Interface to Drosophila Activity Monitor System Result Files
Description: Loads behavioural data from the widely used Drosophila Activity Monitor System (DAMS, TriKinetics <https://trikinetics.com/>) into the rethomics framework.
Author: Quentin Geissmann [aut, cre],
Hadley Wickham [aut]
Maintainer: Quentin Geissmann <qgeissmann@gmail.com>
Diff between damr versions 0.3.4 dated 2019-07-15 and 0.3.7 dated 2020-11-16
DESCRIPTION | 10 ++++---- MD5 | 22 +++++++++---------- R/link-dam-metadata.R | 3 +- R/load-dam.R | 6 +++-- R/parse-datetime.R | 7 ++++++ R/read-dam-file.R | 45 +++++++++++++++++++++++----------------- man/link_dam_metadata.Rd | 4 +-- man/load_dam.Rd | 4 ++- man/read_dam_file.Rd | 20 ++++++++++++++++- man/single_file_metadata.Rd | 4 ++- man/two_files_metadata.Rd | 4 ++- tests/testthat/test-load_dam.R | 46 +++++++++++++++++++++++++++++++++++++++++ 12 files changed, 130 insertions(+), 45 deletions(-)
Title: Portable Native and Joint Stack Traces
Description: Obtain the native stack trace and fuse it with R's
stack trace for easier debugging of R packages with native code.
Author: Kirill Müller [aut, cre] (<https://orcid.org/0000-0002-1416-3412>),
R Consortium [fnd],
Ian Lance Taylor [aut] (Bundled libbacktrace library),
Free Software Foundation [cph] (Bundled libbacktrace library)
Maintainer: Kirill Müller <krlmlr+r@mailbox.org>
Diff between winch versions 0.0.5 dated 2020-11-09 and 0.0.6 dated 2020-11-16
DESCRIPTION | 13 ++-- MD5 | 12 ++-- NEWS.md | 7 ++ inst/doc/report.html | 104 +++++++++++++++++++++++++---------- src/configure.win.sh | 2 tests/testthat/test-add_trace_back.R | 4 - tests/testthat/test-stop.R | 2 7 files changed, 99 insertions(+), 45 deletions(-)
Title: Star Trek Fonts Collection
Description: Provides a collection of true type and open type Star Trek-themed fonts.
Author: Matthew Leonawicz [aut, cre] (<https://orcid.org/0000-0001-9452-2771>)
Maintainer: Matthew Leonawicz <matt_leonawicz@esource.com>
Diff between trekfont versions 0.9.3 dated 2018-11-12 and 0.9.4 dated 2020-11-16
DESCRIPTION | 9 +- MD5 | 13 ++- NEWS.md | 12 ++- README.md | 216 ++++++++++++++++++++++++++++++++++++++++++++++++++----- inst/WORDLIST |only man/figures |only man/trekfonts.Rd | 4 - tests |only 8 files changed, 226 insertions(+), 28 deletions(-)
Title: 'Rcpp' Bindings for 'Annoy', a Library for Approximate Nearest
Neighbors
Description: 'Annoy' is a small C++ library for Approximate Nearest Neighbors
written for efficient memory usage as well an ability to load from / save to
disk. This package provides an R interface by relying on the 'Rcpp' package,
exposing the same interface as the original Python wrapper to 'Annoy'. See
<https://github.com/spotify/annoy> for more on 'Annoy'. 'Annoy' is released
under Version 2.0 of the Apache License. Also included is a small Windows
port of 'mmap' which is released under the MIT license.
Author: Dirk Eddelbuettel
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppAnnoy versions 0.0.16 dated 2020-03-08 and 0.0.17 dated 2020-11-16
ChangeLog | 47 +++++ DESCRIPTION | 10 - MD5 | 23 +- README.md | 11 - build/vignette.rds |binary inst/NEWS.Rd | 10 + inst/doc/UsingAnnoyInCcppWrapper.pdf |binary inst/include/RcppAnnoy.h |only inst/include/annoylib.h | 309 +++++++++++++++++++++++++++-------- inst/include/mman.h | 20 +- src/Makevars | 15 + src/annoy.cpp | 36 +--- src/arch.cpp | 3 13 files changed, 362 insertions(+), 122 deletions(-)
Title: Preprocessing Operators and Pipelines for 'mlr3'
Description: Dataflow programming toolkit that enriches 'mlr3' with a diverse
set of pipelining operators ('PipeOps') that can be composed into graphs.
Operations exist for data preprocessing, model fitting, and ensemble
learning. Graphs can themselves be treated as 'mlr3' 'Learners' and can
therefore be resampled, benchmarked, and tuned.
Author: Martin Binder [aut, cre],
Florian Pfisterer [aut] (<https://orcid.org/0000-0001-8867-762X>),
Lennart Schneider [aut] (<https://orcid.org/0000-0003-4152-5308>),
Bernd Bischl [aut] (<https://orcid.org/0000-0001-6002-6980>),
Michel Lang [aut] (<https://orcid.org/0000-0001-9754-0393>),
Susanne Dandl [aut]
Maintainer: Martin Binder <mlr.developer@mb706.com>
Diff between mlr3pipelines versions 0.3.0 dated 2020-09-13 and 0.3.1 dated 2020-11-16
mlr3pipelines-0.3.0/mlr3pipelines/inst/references.bib |only mlr3pipelines-0.3.0/mlr3pipelines/man/as.data.table.Rd |only mlr3pipelines-0.3.1/mlr3pipelines/DESCRIPTION | 17 - mlr3pipelines-0.3.1/mlr3pipelines/MD5 | 95 ++++---- mlr3pipelines-0.3.1/mlr3pipelines/NAMESPACE | 1 mlr3pipelines-0.3.1/mlr3pipelines/NEWS.md | 19 + mlr3pipelines-0.3.1/mlr3pipelines/R/GraphLearner.R | 2 mlr3pipelines-0.3.1/mlr3pipelines/R/LearnerAvg.R | 2 mlr3pipelines-0.3.1/mlr3pipelines/R/PipeOpEnsemble.R | 13 - mlr3pipelines-0.3.1/mlr3pipelines/R/PipeOpFeatureUnion.R | 19 + mlr3pipelines-0.3.1/mlr3pipelines/R/PipeOpImpute.R | 4 mlr3pipelines-0.3.1/mlr3pipelines/R/PipeOpImputeOOR.R | 2 mlr3pipelines-0.3.1/mlr3pipelines/R/PipeOpMissingIndicators.R | 9 mlr3pipelines-0.3.1/mlr3pipelines/R/PipeOpNMF.R | 107 +++++++--- mlr3pipelines-0.3.1/mlr3pipelines/R/PipeOpSmote.R | 2 mlr3pipelines-0.3.1/mlr3pipelines/R/PipeOpTaskPreproc.R | 19 + mlr3pipelines-0.3.1/mlr3pipelines/R/PipeOpTextVectorizer.R | 2 mlr3pipelines-0.3.1/mlr3pipelines/R/bibentries.R |only mlr3pipelines-0.3.1/mlr3pipelines/R/mlr_graphs_elements.R | 76 ++++--- mlr3pipelines-0.3.1/mlr3pipelines/R/pipe.R | 3 mlr3pipelines-0.3.1/mlr3pipelines/R/reexports.R | 9 mlr3pipelines-0.3.1/mlr3pipelines/README.md | 78 +++---- mlr3pipelines-0.3.1/mlr3pipelines/build/partial.rdb |binary mlr3pipelines-0.3.1/mlr3pipelines/inst/doc |only mlr3pipelines-0.3.1/mlr3pipelines/man/Graph.Rd | 4 mlr3pipelines-0.3.1/mlr3pipelines/man/mlr_graphs_bagging.Rd | 13 - mlr3pipelines-0.3.1/mlr3pipelines/man/mlr_graphs_robustify.Rd | 9 mlr3pipelines-0.3.1/mlr3pipelines/man/mlr_learners_avg.Rd | 4 mlr3pipelines-0.3.1/mlr3pipelines/man/mlr_pipeops_histbin.Rd | 2 mlr3pipelines-0.3.1/mlr3pipelines/man/mlr_pipeops_imputeoor.Rd | 5 mlr3pipelines-0.3.1/mlr3pipelines/man/mlr_pipeops_missind.Rd | 2 mlr3pipelines-0.3.1/mlr3pipelines/man/mlr_pipeops_nmf.Rd | 63 ++++- mlr3pipelines-0.3.1/mlr3pipelines/man/mlr_pipeops_smote.Rd | 5 mlr3pipelines-0.3.1/mlr3pipelines/man/mlr_pipeops_targetmutate.Rd | 2 mlr3pipelines-0.3.1/mlr3pipelines/man/mlr_pipeops_tunethreshold.Rd | 4 mlr3pipelines-0.3.1/mlr3pipelines/man/ppl.Rd | 3 mlr3pipelines-0.3.1/mlr3pipelines/man/reexports.Rd |only mlr3pipelines-0.3.1/mlr3pipelines/tests/testthat/helper_compat.R |only mlr3pipelines-0.3.1/mlr3pipelines/tests/testthat/helper_functions.R | 55 +++-- mlr3pipelines-0.3.1/mlr3pipelines/tests/testthat/test_mlr_graphs_bagging.R | 21 + mlr3pipelines-0.3.1/mlr3pipelines/tests/testthat/test_pipeop_encodeimpact.R | 4 mlr3pipelines-0.3.1/mlr3pipelines/tests/testthat/test_pipeop_featureunion.R | 19 + mlr3pipelines-0.3.1/mlr3pipelines/tests/testthat/test_pipeop_filter.R | 6 mlr3pipelines-0.3.1/mlr3pipelines/tests/testthat/test_pipeop_histbin.R | 10 mlr3pipelines-0.3.1/mlr3pipelines/tests/testthat/test_pipeop_ica.R | 2 mlr3pipelines-0.3.1/mlr3pipelines/tests/testthat/test_pipeop_impute.R | 6 mlr3pipelines-0.3.1/mlr3pipelines/tests/testthat/test_pipeop_imputelearner.R | 9 mlr3pipelines-0.3.1/mlr3pipelines/tests/testthat/test_pipeop_learner.R | 6 mlr3pipelines-0.3.1/mlr3pipelines/tests/testthat/test_pipeop_learnercv.R | 6 mlr3pipelines-0.3.1/mlr3pipelines/tests/testthat/test_pipeop_missind.R | 4 mlr3pipelines-0.3.1/mlr3pipelines/tests/testthat/test_pipeop_textvectorizer.R | 2 51 files changed, 491 insertions(+), 254 deletions(-)
Title: Historical and Ahistorical Population Projection Matrix Analysis
Description: Creates matrix population models for use in population ecological
analyses. Specializes on the construction of historical matrices,
which are 2d matrices comprising 3 time intervals of demographic
information. Estimates both raw and function-based forms of
historical and standard ahistorical matrices. Methodology based on
Ehrlen (2000) <doi:10.1890/0012-9658(2000)081[1675:TDOPPD]2.0.CO;2>.
Author: Richard P. Shefferson [aut, cre]
(<https://orcid.org/0000-0002-5234-3131>),
Johan Ehrlen [aut] (<https://orcid.org/0000-0001-8539-8967>)
Maintainer: Richard P. Shefferson <cdorm@g.ecc.u-tokyo.ac.jp>
Diff between lefko3 versions 3.1.1 dated 2020-11-13 and 3.1.2 dated 2020-11-16
DESCRIPTION | 8 MD5 | 18 R/matrixcreation.R | 53 + R/popchar.R | 38 inst/doc/Chapter1.html | 125 +-- inst/doc/Chapter2a.html | 1144 ++++++++++++++-------------- inst/doc/Chapter2b.html | 1794 ++++++++++++++++++++++----------------------- inst/doc/Chapter2c.html | 1618 ++++++++++++++++++++--------------------- inst/doc/Chapter3a.html | 1150 ++++++++++++++--------------- inst/doc/Chapter3b.html | 1894 ++++++++++++++++++++++++------------------------ 10 files changed, 3951 insertions(+), 3891 deletions(-)
Title: LCARS Aesthetic for Shiny
Description: Provides Shiny widgets and theme that support a 'Library Computer Access/Retrieval System' (LCARS) aesthetic for Shiny apps.
The package also includes functions for adding a minimal LCARS theme to static 'ggplot2' graphs.
More details about LCARS can be found at <https://en.wikipedia.org/wiki/LCARS>.
Author: Matthew Leonawicz [aut, cre] (<https://orcid.org/0000-0001-9452-2771>)
Maintainer: Matthew Leonawicz <matt_leonawicz@esource.com>
Diff between lcars versions 0.3.1 dated 2020-02-06 and 0.3.6 dated 2020-11-16
DESCRIPTION | 11 - MD5 | 33 +++-- NAMESPACE | 2 NEWS.md | 8 + R/shiny.R | 14 +- README.md | 26 +++- build/vignette.rds |binary inst/WORDLIST | 13 +- inst/doc/lcars.R | 1 inst/doc/lcars.Rmd | 1 inst/doc/lcars.html | 313 ++++++++++++++++++++++++++++++-------------------- inst/shiny/demo/app.R | 4 inst/shiny/leaflet |only man/lcarsApp.Rd | 38 +++--- man/lcarsdata.Rd | 28 ++-- vignettes/lcars.Rmd | 1 16 files changed, 300 insertions(+), 193 deletions(-)
Title: Creating Contact and Social Networks
Description: Process spatially- and temporally-discrete data into contact and
social networks, and facilitate network analysis by randomizing
individuals' movement paths and/or related categorical variables. To use
this package, users need only have a dataset containing spatial data
(i.e., latitude/longitude, or planar x & y coordinates), individual IDs
relating spatial data to specific individuals, and date/time information
relating spatial locations to temporal locations. The functionality of this
package ranges from data "cleaning" via multiple filtration functions, to
spatial and temporal data interpolation, and network creation and analysis.
Functions within this package are not limited to describing interpersonal
contacts. Package functions can also identify and quantify "contacts"
between individuals and fixed areas (e.g., home ranges, water bodies,
buildings, etc.). As such, this package is an incredibly useful resource
for facilitating epidemiological, ecological, ethological and sociological
research.
Author: Trevor Farthing [aut, cre],
Daniel Dawson [aut],
Cristina Lanzas [ctb]
Maintainer: Trevor Farthing <tsfarthi@ncsu.edu>
Diff between contact versions 1.2.4 dated 2020-07-21 and 1.2.5 dated 2020-11-16
contact-1.2.4/contact/inst/doc/Using_the_contact_package_v1_2_4.R |only contact-1.2.4/contact/inst/doc/Using_the_contact_package_v1_2_4.Rmd |only contact-1.2.4/contact/inst/doc/Using_the_contact_package_v1_2_4.html |only contact-1.2.4/contact/vignettes/Using_the_contact_package_v1_2_4.Rmd |only contact-1.2.5/contact/DESCRIPTION | 6 - contact-1.2.5/contact/MD5 | 16 +-- contact-1.2.5/contact/R/findDistThresh.R | 50 +++++----- contact-1.2.5/contact/build/vignette.rds |binary contact-1.2.5/contact/inst/doc/Using_the_contact_package_v1_2_5.R |only contact-1.2.5/contact/inst/doc/Using_the_contact_package_v1_2_5.Rmd |only contact-1.2.5/contact/inst/doc/Using_the_contact_package_v1_2_5.html |only contact-1.2.5/contact/man/findDistThresh.Rd | 30 +----- contact-1.2.5/contact/vignettes/Using_the_contact_package_v1_2_5.Rmd |only 13 files changed, 47 insertions(+), 55 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-02-22 0.1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-05-31 0.5
2018-08-17 0.4.0
2016-03-27 0.3.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-02-04 1.1.4
2019-09-05 1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-08-10 0.1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-10-10 0.2.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-08-05 1.8.2
2019-10-05 1.8.1
2019-02-24 1.8.0
2018-02-05 1.7.4
2016-10-26 1.7.3
2016-05-15 1.7.2
2015-10-06 1.7.1
2015-06-18 1.7
2014-07-27 1.6
2014-03-27 1.5
2013-10-02 1.4
2013-05-24 1.3
2013-04-23 1.2
2013-04-09 1.1
2012-11-06 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-08-12 2.0.3
2020-03-08 1.0.8
2019-12-22 1.0.6
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-02-19 0.1.2
Title: The Demand and Supply for Electricity in the US
Description: Provides a set of regular time-series datasets, describing the US electricity grid. That includes the total demand and supply, and as well as the demand by energy source (coal, solar, wind, etc.). Source: US Energy Information Administration (Dec 2019) <https://www.eia.gov/>.
Author: Rami Krispin [aut, cre]
Maintainer: Rami Krispin <rami.krispin@gmail.com>
Diff between USgrid versions 0.1.0 dated 2020-01-24 and 0.1.1 dated 2020-11-16
DESCRIPTION | 6 +++--- MD5 | 11 ++++++----- NEWS.md | 8 ++++++-- data/Cal_elec.rda |binary data/US_elec.rda |binary data/US_source.rda |binary data/datalist |only 7 files changed, 15 insertions(+), 10 deletions(-)
Title: API Client for Fantasy Football League Platforms
Description: Helps access various Fantasy Football APIs by handling authentication and
rate-limiting, forming appropriate calls, and returning tidy
dataframes which can be easily connected to other data sources.
Author: Tan Ho [aut, cre]
Maintainer: Tan Ho <tan@tanho.ca>
Diff between ffscrapr versions 1.0.0 dated 2020-08-17 and 1.1.0 dated 2020-11-16
ffscrapr-1.0.0/ffscrapr/R/sleeper.R |only ffscrapr-1.0.0/ffscrapr/tests/testthat/test-mfl.R |only ffscrapr-1.0.0/ffscrapr/tests/testthat/test-sleeper.R |only ffscrapr-1.1.0/ffscrapr/DESCRIPTION | 11 ffscrapr-1.1.0/ffscrapr/MD5 | 260 +++++++--- ffscrapr-1.1.0/ffscrapr/NAMESPACE | 24 ffscrapr-1.1.0/ffscrapr/NEWS.md | 33 + ffscrapr-1.1.0/ffscrapr/R/dp_import.R | 24 ffscrapr-1.1.0/ffscrapr/R/generics.R | 142 +++-- ffscrapr-1.1.0/ffscrapr/R/helpers.R | 22 ffscrapr-1.1.0/ffscrapr/R/mfl_api.R | 2 ffscrapr-1.1.0/ffscrapr/R/mfl_connect.R | 23 ffscrapr-1.1.0/ffscrapr/R/mfl_draft.R | 17 ffscrapr-1.1.0/ffscrapr/R/mfl_draftpicks.R | 7 ffscrapr-1.1.0/ffscrapr/R/mfl_franchises.R | 8 ffscrapr-1.1.0/ffscrapr/R/mfl_league.R | 5 ffscrapr-1.1.0/ffscrapr/R/mfl_players.R |only ffscrapr-1.1.0/ffscrapr/R/mfl_playerscores.R | 5 ffscrapr-1.1.0/ffscrapr/R/mfl_rosters.R | 53 -- ffscrapr-1.1.0/ffscrapr/R/mfl_schedule.R | 66 +- ffscrapr-1.1.0/ffscrapr/R/mfl_scoring.R | 8 ffscrapr-1.1.0/ffscrapr/R/mfl_standings.R | 10 ffscrapr-1.1.0/ffscrapr/R/mfl_starters.R |only ffscrapr-1.1.0/ffscrapr/R/mfl_transactions.R | 5 ffscrapr-1.1.0/ffscrapr/R/mfl_userleagues.R |only ffscrapr-1.1.0/ffscrapr/R/sleeper_api.R |only ffscrapr-1.1.0/ffscrapr/R/sleeper_connect.R |only ffscrapr-1.1.0/ffscrapr/R/sleeper_draft.R |only ffscrapr-1.1.0/ffscrapr/R/sleeper_draftpicks.R |only ffscrapr-1.1.0/ffscrapr/R/sleeper_franchises.R |only ffscrapr-1.1.0/ffscrapr/R/sleeper_league.R |only ffscrapr-1.1.0/ffscrapr/R/sleeper_players.R |only ffscrapr-1.1.0/ffscrapr/R/sleeper_playerscores.R |only ffscrapr-1.1.0/ffscrapr/R/sleeper_rosters.R |only ffscrapr-1.1.0/ffscrapr/R/sleeper_schedule.R |only ffscrapr-1.1.0/ffscrapr/R/sleeper_scoring.R |only ffscrapr-1.1.0/ffscrapr/R/sleeper_standings.R |only ffscrapr-1.1.0/ffscrapr/R/sleeper_starters.R |only ffscrapr-1.1.0/ffscrapr/R/sleeper_transactions.R |only ffscrapr-1.1.0/ffscrapr/R/sleeper_userleagues.R |only ffscrapr-1.1.0/ffscrapr/R/utils.R | 2 ffscrapr-1.1.0/ffscrapr/R/zzz.R | 27 - ffscrapr-1.1.0/ffscrapr/README.md | 79 +-- ffscrapr-1.1.0/ffscrapr/build/vignette.rds |binary ffscrapr-1.1.0/ffscrapr/inst/doc/mfl_basics.R | 8 ffscrapr-1.1.0/ffscrapr/inst/doc/mfl_basics.Rmd | 22 ffscrapr-1.1.0/ffscrapr/inst/doc/mfl_basics.html | 167 +++--- ffscrapr-1.1.0/ffscrapr/inst/doc/mfl_getendpoint.Rmd | 3 ffscrapr-1.1.0/ffscrapr/inst/doc/mfl_getendpoint.html | 6 ffscrapr-1.1.0/ffscrapr/inst/doc/sleeper_basics.R |only ffscrapr-1.1.0/ffscrapr/inst/doc/sleeper_basics.Rmd |only ffscrapr-1.1.0/ffscrapr/inst/doc/sleeper_basics.html |only ffscrapr-1.1.0/ffscrapr/inst/doc/sleeper_getendpoint.R |only ffscrapr-1.1.0/ffscrapr/inst/doc/sleeper_getendpoint.Rmd |only ffscrapr-1.1.0/ffscrapr/inst/doc/sleeper_getendpoint.html |only ffscrapr-1.1.0/ffscrapr/man/dot-fn_choose_season.Rd |only ffscrapr-1.1.0/ffscrapr/man/dot-fn_drop_nulls.Rd |only ffscrapr-1.1.0/ffscrapr/man/dot-fn_set_ratelimit.Rd |only ffscrapr-1.1.0/ffscrapr/man/dot-fn_set_useragent.Rd |only ffscrapr-1.1.0/ffscrapr/man/dot-mfl_logincookie.Rd |only ffscrapr-1.1.0/ffscrapr/man/dot-sleeper_userid.Rd |only ffscrapr-1.1.0/ffscrapr/man/dp_playerids.Rd | 5 ffscrapr-1.1.0/ffscrapr/man/dp_values.Rd | 9 ffscrapr-1.1.0/ffscrapr/man/ff_connect.Rd | 19 ffscrapr-1.1.0/ffscrapr/man/ff_draft.Rd | 28 - ffscrapr-1.1.0/ffscrapr/man/ff_draftpicks.Rd | 25 ffscrapr-1.1.0/ffscrapr/man/ff_franchises.Rd | 25 ffscrapr-1.1.0/ffscrapr/man/ff_league.Rd | 23 ffscrapr-1.1.0/ffscrapr/man/ff_playerscores.Rd | 20 ffscrapr-1.1.0/ffscrapr/man/ff_rosters.Rd | 24 ffscrapr-1.1.0/ffscrapr/man/ff_schedule.Rd | 23 ffscrapr-1.1.0/ffscrapr/man/ff_scoring.Rd | 23 ffscrapr-1.1.0/ffscrapr/man/ff_standings.Rd | 25 ffscrapr-1.1.0/ffscrapr/man/ff_starters.Rd |only ffscrapr-1.1.0/ffscrapr/man/ff_transactions.Rd | 27 - ffscrapr-1.1.0/ffscrapr/man/ff_userleagues.Rd |only ffscrapr-1.1.0/ffscrapr/man/mfl_connect.Rd | 7 ffscrapr-1.1.0/ffscrapr/man/mfl_players.Rd | 5 ffscrapr-1.1.0/ffscrapr/man/sleeper_connect.Rd | 77 +- ffscrapr-1.1.0/ffscrapr/man/sleeper_getendpoint.Rd |only ffscrapr-1.1.0/ffscrapr/man/sleeper_players.Rd |only ffscrapr-1.1.0/ffscrapr/man/sleeper_userleagues.Rd |only ffscrapr-1.1.0/ffscrapr/tests/testthat.R | 1 ffscrapr-1.1.0/ffscrapr/tests/testthat/api.myfantasyleague.com/2019/export-279298.R |only ffscrapr-1.1.0/ffscrapr/tests/testthat/api.myfantasyleague.com/2019/export-720c0f.R | 71 +- ffscrapr-1.1.0/ffscrapr/tests/testthat/api.myfantasyleague.com/2019/export-b7a002.R | 71 +- ffscrapr-1.1.0/ffscrapr/tests/testthat/api.myfantasyleague.com/2020/export-288388.R |only ffscrapr-1.1.0/ffscrapr/tests/testthat/api.myfantasyleague.com/2020/export-288388.json |only ffscrapr-1.1.0/ffscrapr/tests/testthat/api.myfantasyleague.com/2020/export-586c35.R |only ffscrapr-1.1.0/ffscrapr/tests/testthat/api.myfantasyleague.com/2020/export-586c35.json |only ffscrapr-1.1.0/ffscrapr/tests/testthat/api.myfantasyleague.com/2020/export-5b11ff.R | 71 +- ffscrapr-1.1.0/ffscrapr/tests/testthat/api.myfantasyleague.com/2020/export-6788e2.R | 51 - ffscrapr-1.1.0/ffscrapr/tests/testthat/api.myfantasyleague.com/2020/export-7ad747.R |only ffscrapr-1.1.0/ffscrapr/tests/testthat/api.myfantasyleague.com/2020/export-96a6d5.R | 18 ffscrapr-1.1.0/ffscrapr/tests/testthat/api.myfantasyleague.com/2020/export-b3862c.R | 71 +- ffscrapr-1.1.0/ffscrapr/tests/testthat/api.myfantasyleague.com/2020/export-ccd01d.R | 71 +- ffscrapr-1.1.0/ffscrapr/tests/testthat/api.myfantasyleague.com/2020/export-d275ab.R |only ffscrapr-1.1.0/ffscrapr/tests/testthat/api.myfantasyleague.com/2020/export-d275ab.json |only ffscrapr-1.1.0/ffscrapr/tests/testthat/api.myfantasyleague.com/2020/export-d4f576.R | 71 -- ffscrapr-1.1.0/ffscrapr/tests/testthat/api.myfantasyleague.com/2020/export-d4f576.json |only ffscrapr-1.1.0/ffscrapr/tests/testthat/api.myfantasyleague.com/2020/login-8aa81d-POST.R | 14 ffscrapr-1.1.0/ffscrapr/tests/testthat/api.sleeper.app |only ffscrapr-1.1.0/ffscrapr/tests/testthat/helper.R | 1 ffscrapr-1.1.0/ffscrapr/tests/testthat/test-dp_import.R | 7 ffscrapr-1.1.0/ffscrapr/tests/testthat/test-ff_connect.R | 19 ffscrapr-1.1.0/ffscrapr/tests/testthat/test-ff_draft.R | 12 ffscrapr-1.1.0/ffscrapr/tests/testthat/test-ff_draftpicks.R | 15 ffscrapr-1.1.0/ffscrapr/tests/testthat/test-ff_franchises.R |only ffscrapr-1.1.0/ffscrapr/tests/testthat/test-ff_league.R | 9 ffscrapr-1.1.0/ffscrapr/tests/testthat/test-ff_playerscores.R | 7 ffscrapr-1.1.0/ffscrapr/tests/testthat/test-ff_rosters.R | 10 ffscrapr-1.1.0/ffscrapr/tests/testthat/test-ff_schedule.R | 20 ffscrapr-1.1.0/ffscrapr/tests/testthat/test-ff_scoring.R |only ffscrapr-1.1.0/ffscrapr/tests/testthat/test-ff_standings.R | 14 ffscrapr-1.1.0/ffscrapr/tests/testthat/test-ff_starters.R |only ffscrapr-1.1.0/ffscrapr/tests/testthat/test-ff_transactions.R | 12 ffscrapr-1.1.0/ffscrapr/tests/testthat/test-ff_userleagues.R |only ffscrapr-1.1.0/ffscrapr/tests/testthat/test-generics.R | 20 ffscrapr-1.1.0/ffscrapr/tests/testthat/test-helpers.R | 4 ffscrapr-1.1.0/ffscrapr/vignettes/mfl_basics.Rmd | 22 ffscrapr-1.1.0/ffscrapr/vignettes/mfl_getendpoint.Rmd | 3 ffscrapr-1.1.0/ffscrapr/vignettes/sleeper_basics.Rmd |only ffscrapr-1.1.0/ffscrapr/vignettes/sleeper_getendpoint.Rmd |only 123 files changed, 1335 insertions(+), 754 deletions(-)
Title: Direction Analysis for Pathways and Kinases
Description: Direction analysis is a set of tools designed to identify
combinatorial effects of multiple treatments/conditions on pathways
and kinases profiled by microarray, RNA-seq, proteomics, or phosphoproteomics
data. See Yang P et al (2014) <doi:10.1093/bioinformatics/btt616>; and Yang P et al. (2016) <doi:10.1002/pmic.201600068>.
Author: Pengyi Yang & Ellis Patrick
Maintainer: Pengyi Yang <yangpy7@gmail.com>
Diff between directPA versions 1.4 dated 2019-11-07 and 1.5 dated 2020-11-16
DESCRIPTION | 14 +++++++------- MD5 | 10 +++++----- NAMESPACE | 1 - R/directPA.R | 21 +++++++++++++++++---- R/perturbPlot2d.R | 3 +-- R/perturbPlot3d.R | 29 +++++++++++++++++++---------- 6 files changed, 49 insertions(+), 29 deletions(-)