Title: Functions to Create Publication-Quality Plots
Description: Contains several plotting functions such as barplots, scatterplots, heatmaps, as well as functions to combine plots and assist in the creation of these plots. These functions will give users great ease of use and customization options in broad use for biomedical applications, as well as general purpose plotting. Each of the functions also provides valid default settings to make plotting data more efficient and producing high quality plots with standard colour schemes simpler. All functions within this package are capable of producing plots that are of the quality to be presented in scientific publications and journals. P'ng et al.; BPG: Seamless, automated and interactive visualization of scientific data; BMC Bioinformatics 2019 <doi: 10.1186/s12859-019-2610-2>.
Author: Paul Boutros [aut, cre],
Christine P'ng [ctb],
Jeff Green [ctb],
Stephenie Prokopec [ctb],
Ontario Institute for Cancer Research [cph],
The R Core Team [cph],
The R Foundation [cph],
Robert Gentleman [ctb],
Ross Ihaka [ctb],
Caden Bugh [ctb]
Maintainer: Paul Boutros <PBoutros@mednet.ucla.edu>
Diff between BoutrosLab.plotting.general versions 6.0.1 dated 2020-08-05 and 6.0.2 dated 2021-01-11
DESCRIPTION | 12 ++++++------ MD5 | 12 ++++++------ NEWS | 19 +++++++++++++++++++ R/create.multipanelplot.R | 40 ++++++++++++++++++++++++++++++++-------- R/inside.auto.legend.R | 10 ++++++++-- R/write.plot.R | 4 +++- inst/doc/PlottingGuide.pdf |binary 7 files changed, 74 insertions(+), 23 deletions(-)
More information about BoutrosLab.plotting.general at CRAN
Permanent link
Title: Wavelet Approaches to Studies of Synchrony in Ecology and Other
Fields
Description: Tools for a wavelet-based approach to analyzing spatial synchrony, principally in ecological data. Some tools will be useful for studying community synchrony. See, for instance, Sheppard et al (2016) <doi: 10.1038/NCLIMATE2991>, Sheppard et al (2017) <doi: 10.1051/epjnbp/2017000>, Sheppard et al (2019) <doi: 10.1371/journal.pcbi.1006744>.
Author: Daniel C. Reuman [aut, cre],
Thomas L. Anderson [aut],
Jonathan A. Walter [aut],
Lei Zhao [aut],
Lawrence W. Sheppard [aut]
Maintainer: Daniel C. Reuman <reuman@ku.edu>
Diff between wsyn versions 1.0.2 dated 2019-12-18 and 1.0.3 dated 2021-01-11
DESCRIPTION | 10 MD5 | 141 +++++----- R/addwmfs.R | 11 R/addwpmfs.R | 11 R/clust.R | 11 R/clust_methods.R | 11 R/synmat.R | 11 inst/doc/wsynvignette.R | 104 +++---- inst/doc/wsynvignette.pdf |binary man/addwmfs.Rd | 11 man/addwpmfs.Rd | 19 + man/clust.Rd | 28 + man/clust_methods.Rd | 11 man/coh.Rd | 14 man/fastcohtest.Rd | 14 man/plotmag.Rd | 78 ++++- man/plotmap.Rd | 8 man/plotrank.Rd | 6 man/synmat.Rd | 27 + man/warray.Rd | 3 man/wlm.Rd | 13 man/wmf.Rd | 3 man/wpmf.Rd | 12 man/wt.Rd | 10 tests/testthat/helper-utils.R |only tests/testthat/tests_addwmfs.R | 6 tests/testthat/tests_addwpmfs.R | 6 tests/testthat/tests_clust.R | 6 tests/testthat/tests_clust_methods.R | 12 tests/testthat/tests_plotmag.R | 28 - tests/testthat/tests_plotmap.R | 14 tests/testthat/tests_plotphase.R | 4 tests/testthat/tests_plotrank.R | 6 tests/testthat/tests_synmat.R | 60 ++-- vignettes/wsynvignette_files/figure-latex/abuse_cor-1.pdf |binary vignettes/wsynvignette_files/figure-latex/clust_demo-1.pdf |binary vignettes/wsynvignette_files/figure-latex/clust_demo-2.pdf |binary vignettes/wsynvignette_files/figure-latex/clust_demo-3.pdf |binary vignettes/wsynvignette_files/figure-latex/clust_demo-4.pdf |binary vignettes/wsynvignette_files/figure-latex/clust_demo-5.pdf |binary vignettes/wsynvignette_files/figure-latex/clust_demo-6.pdf |binary vignettes/wsynvignette_files/figure-latex/clust_demo-7.pdf |binary vignettes/wsynvignette_files/figure-latex/clust_demo-8.pdf |binary vignettes/wsynvignette_files/figure-latex/coh_example_call_fast-1.pdf |binary vignettes/wsynvignette_files/figure-latex/coh_plot-1.pdf |binary vignettes/wsynvignette_files/figure-latex/detect_tsspecific_sync-1.pdf |binary vignettes/wsynvignette_files/figure-latex/detect_tsspecific_sync-2.pdf |binary vignettes/wsynvignette_files/figure-latex/display_p_1-1.pdf |binary vignettes/wsynvignette_files/figure-latex/dropd1_1-1.pdf |binary vignettes/wsynvignette_files/figure-latex/dropd1_1-2.pdf |binary vignettes/wsynvignette_files/figure-latex/dropd2_1-1.pdf |binary vignettes/wsynvignette_files/figure-latex/dropd2_1-2.pdf |binary vignettes/wsynvignette_files/figure-latex/dropdirrel_1-1.pdf |binary vignettes/wsynvignette_files/figure-latex/dropdirrel_1-2.pdf |binary vignettes/wsynvignette_files/figure-latex/examp_predsync_1-1.pdf |binary vignettes/wsynvignette_files/figure-latex/examp_predsync_1-2.pdf |binary vignettes/wsynvignette_files/figure-latex/examp_predsync_2-1.pdf |binary vignettes/wsynvignette_files/figure-latex/pearson_synmat-1.pdf |binary vignettes/wsynvignette_files/figure-latex/plotphase_1-1.pdf |binary vignettes/wsynvignette_files/figure-latex/plotrank_1-1.pdf |binary vignettes/wsynvignette_files/figure-latex/wmf_example_1-1.pdf |binary vignettes/wsynvignette_files/figure-latex/wmfs_wlmexample-1.pdf |binary vignettes/wsynvignette_files/figure-latex/wmfs_wlmexample-2.pdf |binary vignettes/wsynvignette_files/figure-latex/wmfs_wlmexample-3.pdf |binary vignettes/wsynvignette_files/figure-latex/wpmf_example_1-1.pdf |binary vignettes/wsynvignette_files/figure-latex/wpmf_example_1_cors-1.pdf |binary vignettes/wsynvignette_files/figure-latex/wpmf_example_1_plotts-1.pdf |binary vignettes/wsynvignette_files/figure-latex/wt_example_1_plot-1.pdf |binary vignettes/wsynvignette_files/figure-latex/wt_example_1_plotphase-1.pdf |binary vignettes/wsynvignette_files/figure-latex/wt_example_1_power-1.pdf |binary vignettes/wsynvignette_files/figure-latex/wt_example_2-1.pdf |binary vignettes/wsynvignette_files/figure-latex/wt_example_2-2.pdf |binary 72 files changed, 461 insertions(+), 248 deletions(-)
Title: Read and Write 'las' and 'laz' Binary File Formats Used for
Remote Sensing Data
Description: Read and write 'las' and 'laz' binary file formats. The LAS file format is a public file format for the interchange of 3-dimensional point cloud data between data users. The LAS specifications are approved by the American Society for Photogrammetry and Remote Sensing <https://www.asprs.org/divisions-committees/lidar-division/laser-las-file-format-exchange-activities>. The LAZ file format is an open and lossless compression scheme for binary LAS format versions 1.0 to 1.3 <https://laszip.org/>.
Author: Jean-Romain Roussel [aut, cre, cph],
Florian De Boissieu [aut, ctb] (Enable the support of .lax file and
extra byte attributes),
Martin Isenburg [cph] (Is the author of the LASlib and LASzip
libraries),
David Auty [ctb] (Reviewed the documentation),
Pierrick Marie [ctb] (Helped to compile LASlib code in R),
Tiago de Conto [ctb] (Implemented the -thin_with_voxel filter method)
Maintainer: Jean-Romain Roussel <jean-romain.roussel.1@ulaval.ca>
Diff between rlas versions 1.3.8 dated 2020-12-14 and 1.3.9 dated 2021-01-11
DESCRIPTION | 8 ++++---- MD5 | 8 +++++--- NEWS.md | 18 +++++++++++------- inst/extdata/example.lax |only inst/extdata/extra_byte.lax |only src/LASzip/lasinterval.cpp | 2 +- 6 files changed, 21 insertions(+), 15 deletions(-)
Title: Mixture Models for Clustering and Classification
Description: An implementation of 14 parsimonious mixture models for model-based clustering or model-based classification. Gaussian, generalized hyperbolic, variance-gamma or skew-t mixtures are available. All approaches work with missing data. Celeux and Govaert (1995) <doi:10.1016/0031-3203(94)00125-6>, Browne and McNicholas (2014) <doi:10.1007/s11634-013-0139-1>, Browne and McNicholas (2015) <doi:10.1002/cjs.11246>.
Author: Nik Pocuca [aut],
Ryan P. Browne [aut],
Paul D. McNicholas [aut, cre]
Maintainer: Paul D. McNicholas <mcnicholas@math.mcmaster.ca>
Diff between mixture versions 1.5.1 dated 2020-12-12 and 2.0.0 dated 2021-01-11
mixture-1.5.1/mixture/inst |only mixture-1.5.1/mixture/man/e.step.Rd |only mixture-1.5.1/mixture/man/m.step.Rd |only mixture-1.5.1/mixture/src/Makevars |only mixture-1.5.1/mixture/src/functions.h |only mixture-1.5.1/mixture/src/mixture.c |only mixture-1.5.1/mixture/src/registerDynamicSymbol.c |only mixture-1.5.1/mixture/src/zeroin.h |only mixture-2.0.0/mixture/ChangeLog | 20 mixture-2.0.0/mixture/DESCRIPTION | 34 mixture-2.0.0/mixture/MD5 | 100 + mixture-2.0.0/mixture/NAMESPACE | 52 mixture-2.0.0/mixture/R/RcppExports.R |only mixture-2.0.0/mixture/R/gh_mixture.R |only mixture-2.0.0/mixture/R/mixture.R | 1610 +++++++++------------- mixture-2.0.0/mixture/R/st_mixture.R |only mixture-2.0.0/mixture/R/vg_mixture.R |only mixture-2.0.0/mixture/cleanup |only mixture-2.0.0/mixture/configure |only mixture-2.0.0/mixture/configure.ac |only mixture-2.0.0/mixture/data/sx2.rda |only mixture-2.0.0/mixture/data/sx3.rda |only mixture-2.0.0/mixture/man/ARI.Rd |only mixture-2.0.0/mixture/man/MAP.Rd |only mixture-2.0.0/mixture/man/e_step.Rd |only mixture-2.0.0/mixture/man/get_best_model.Rd |only mixture-2.0.0/mixture/man/ghpcm.Rd |only mixture-2.0.0/mixture/man/gpcm.Rd | 118 - mixture-2.0.0/mixture/man/main_loop.Rd |only mixture-2.0.0/mixture/man/main_loop_gh.Rd |only mixture-2.0.0/mixture/man/main_loop_st.Rd |only mixture-2.0.0/mixture/man/main_loop_vg.Rd |only mixture-2.0.0/mixture/man/mixture.Rd | 17 mixture-2.0.0/mixture/man/stpcm.Rd |only mixture-2.0.0/mixture/man/sx2.Rd |only mixture-2.0.0/mixture/man/sx3.Rd |only mixture-2.0.0/mixture/man/vgpcm.Rd |only mixture-2.0.0/mixture/man/z_ig_kmeans.Rd |only mixture-2.0.0/mixture/man/z_ig_random_hard.Rd |only mixture-2.0.0/mixture/man/z_ig_random_soft.Rd |only mixture-2.0.0/mixture/src/Cluster_Error.hpp |only mixture-2.0.0/mixture/src/GH_Model |only mixture-2.0.0/mixture/src/Makevars.in |only mixture-2.0.0/mixture/src/Makevars.win |only mixture-2.0.0/mixture/src/RcppExports.cpp |only mixture-2.0.0/mixture/src/ST_Model |only mixture-2.0.0/mixture/src/VG_Model |only mixture-2.0.0/mixture/src/ghpcm_arma.cpp |only mixture-2.0.0/mixture/src/gpcm_arma.cpp |only mixture-2.0.0/mixture/src/stpcm_arma.cpp |only mixture-2.0.0/mixture/src/vgpcm_arma.cpp |only 51 files changed, 945 insertions(+), 1006 deletions(-)
Title: Functional Data Analysis and Empirical Dynamics
Description: A versatile package that provides implementation of various
methods of Functional Data Analysis (FDA) and Empirical Dynamics. The core of this
package is Functional Principal Component Analysis (FPCA), a key technique for
functional data analysis, for sparsely or densely sampled random trajectories
and time courses, via the Principal Analysis by Conditional Estimation
(PACE) algorithm. This core algorithm yields covariance and mean functions,
eigenfunctions and principal component (scores), for both functional data and
derivatives, for both dense (functional) and sparse (longitudinal) sampling designs.
For sparse designs, it provides fitted continuous trajectories with confidence bands,
even for subjects with very few longitudinal observations. PACE is a viable and
flexible alternative to random effects modeling of longitudinal data. There is also a
Matlab version (PACE) that contains some methods not available on fdapace and vice
versa. Updates to fdapace were supported by grants from NIH Echo and NSF DMS-1712864 and DMS-2014626. Please cite our package if you use it (You may run the command citation("fdapace") to get the citation format and bibtex entry).
References: Wang, J.L., Chiou, J., Müller, H.G. (2016) <doi:10.1146/annurev-statistics-041715-033624>;
Chen, K., Zhang, X., Petersen, A., Müller, H.G. (2017) <doi:10.1007/s12561-015-9137-5>.
Author: Cody Carroll [aut, cre] (<https://orcid.org/0000-0003-3525-8653>),
Alvaro Gajardo [aut],
Yaqing Chen [aut],
Xiongtao Dai [aut],
Jianing Fan [aut],
Pantelis Z. Hadjipantelis [aut],
Kyunghee Han [aut],
Hao Ji [aut],
Shu-Chin Lin [ctb],
Paromita Dubey [ctb],
Hans-Georg Mueller [cph, ths, aut],
Jane-Ling Wang [cph, ths, aut]
Maintainer: Cody Carroll <cjcarroll@ucdavis.edu>
Diff between fdapace versions 0.5.5 dated 2020-07-29 and 0.5.6 dated 2021-01-11
DESCRIPTION | 8 +-- MD5 | 48 ++++++++++---------- NEWS | 6 ++ R/CheckOptions.R | 2 R/CreateOutliersPlot.R | 76 ++++++++++++++++---------------- R/CreateScreePlot.R | 16 +++--- R/FCReg.R | 9 +++ R/FPCA.R | 20 ++++---- R/GetEigenAnalysisResults.R | 5 +- R/GetRho.R | 10 +--- R/SelectK.R | 10 ++-- R/SetOptions.R | 41 +++++++++++++---- R/medfly25.R | 2 R/predict.FPCA.R | 13 +++-- README.md | 4 - build/vignette.rds |binary inst/doc/fdapaceVig.Rmd | 4 - inst/doc/fdapaceVig.html | 103 ++++++++++++++++++++++++++++++++++++++++---- man/CreateOutliersPlot.Rd | 2 man/FCReg.Rd | 9 +++ man/FPCA.Rd | 16 +++--- man/SelectK.Rd | 2 man/medfly25.Rd | 2 man/predict.FPCA.Rd | 6 +- vignettes/fdapaceVig.Rmd | 4 - 25 files changed, 278 insertions(+), 140 deletions(-)
Title: Cramer-von Mises Goodness-of-Fit Tests
Description: It is devoted to Cramer-von Mises goodness-of-fit tests.
It implements three statistical methods based on Cramer-von Mises statistics to estimate and test a regression model.
Author: Romain Azais, Sandie Ferrigno and Marie-Jose Martinez
Maintainer: Romain Azais <romain.azais@inria.fr>
Diff between cvmgof versions 1.0.0 dated 2018-12-03 and 1.0.3 dated 2021-01-11
DESCRIPTION | 6 MD5 | 46 +-- NAMESPACE | 2 R/acgm.R | 3 R/df.R | 2 R/kernels.R | 32 +- R/vkgmss.R | 4 man/acgm.bandwidth.selection.linkfunction.Rd | 115 ++++----- man/acgm.linkfunction.estim.Rd | 122 +++++----- man/acgm.statistics.Rd | 146 ++++++------ man/acgm.test.bootstrap.Rd | 209 +++++++++--------- man/cvmgof-package.Rd | 252 +++++++++++---------- man/df.bandwidth.selection.linkfunction.Rd | 120 +++++----- man/df.cdf.estim.Rd | 142 ++++++------ man/df.linkfunction.estim.Rd | 124 +++++----- man/df.statistics.Rd | 170 +++++++------- man/df.test.bootstrap.Rd | 288 ++++++++++++------------- man/kernel.function.epan.Rd | 50 ++-- man/vkgmss.bandwidth.selection.linkfunction.Rd | 129 +++++------ man/vkgmss.linkfunction.estim.Rd | 131 +++++------ man/vkgmss.residuals.cdf.estim.Rd | 127 +++++------ man/vkgmss.sd.estim.Rd | 123 +++++----- man/vkgmss.statistics.Rd | 142 ++++++------ man/vkgmss.test.bootstrap.Rd | 208 +++++++++--------- 24 files changed, 1354 insertions(+), 1339 deletions(-)
Title: Plot Shipboard DAS Data
Description: A utility program oriented to create maps, plot data, and do basic data summaries
of 'DAS' data <https://swfsc-publications.fisheries.noaa.gov/publications/TM/SWFSC/NOAA-TM-NMFS-SWFSC-305.PDF>
produced by 'WinCruz' from the Southwest Fisheries Science Center.
<https://www.fisheries.noaa.gov/west-coast/science-data/california-current-marine-mammal-assessment-program>.
Author: Sam Woodman [aut, cre] (<https://orcid.org/0000-0001-6071-8186>),
Tim Gerrodette [aut]
Maintainer: Sam Woodman <sam.woodman@noaa.gov>
Diff between CruzPlot versions 1.4.2 dated 2020-09-07 and 1.4.3 dated 2021-01-11
DESCRIPTION | 12 ++++++------ MD5 | 8 ++++---- NEWS.md | 4 ++++ README.md | 44 ++++++++++++++++++-------------------------- tests/testthat/test-shiny.R | 2 +- 5 files changed, 33 insertions(+), 37 deletions(-)
Title: Analysis of Massive SNP Arrays
Description: Easy-to-use, efficient, flexible and scalable tools
for analyzing massive SNP arrays <doi:10.1093/bioinformatics/bty185>.
Author: Florian Privé [aut, cre],
Michael Blum [ths],
Hugues Aschard [ths]
Maintainer: Florian Privé <florian.prive.21@gmail.com>
Diff between bigsnpr versions 1.5.2 dated 2020-11-01 and 1.6.1 dated 2021-01-11
bigsnpr-1.5.2/bigsnpr/R/assoc-bgen.R |only bigsnpr-1.5.2/bigsnpr/man/snp_assocBGEN.Rd |only bigsnpr-1.5.2/bigsnpr/src/assoc-bgen.cpp |only bigsnpr-1.5.2/bigsnpr/tests/testthat/test-4-assocBGEN.R |only bigsnpr-1.6.1/bigsnpr/DESCRIPTION | 10 bigsnpr-1.6.1/bigsnpr/MD5 | 79 +++--- bigsnpr-1.6.1/bigsnpr/NAMESPACE | 2 bigsnpr-1.6.1/bigsnpr/NEWS.md | 30 ++ bigsnpr-1.6.1/bigsnpr/R/LDpred2.R | 90 ++++--- bigsnpr-1.6.1/bigsnpr/R/MAX3.R | 2 bigsnpr-1.6.1/bigsnpr/R/PRS.R | 60 +++++ bigsnpr-1.6.1/bigsnpr/R/RcppExports.R | 12 - bigsnpr-1.6.1/bigsnpr/R/bed-class.R | 3 bigsnpr-1.6.1/bigsnpr/R/binom-scaling.R | 20 - bigsnpr-1.6.1/bigsnpr/R/clumping.R | 5 bigsnpr-1.6.1/bigsnpr/R/external-software.R | 43 ++- bigsnpr-1.6.1/bigsnpr/R/man-qq-gc.R | 2 bigsnpr-1.6.1/bigsnpr/R/match-alleles.R | 4 bigsnpr-1.6.1/bigsnpr/R/subset-QC.R | 2 bigsnpr-1.6.1/bigsnpr/build |only bigsnpr-1.6.1/bigsnpr/inst/WORDLIST | 2 bigsnpr-1.6.1/bigsnpr/man/LDpred2.Rd | 191 ++++++++-------- bigsnpr-1.6.1/bigsnpr/man/bed_projectPCA.Rd | 4 bigsnpr-1.6.1/bigsnpr/man/bed_scaleBinom.Rd | 6 bigsnpr-1.6.1/bigsnpr/man/download_plink.Rd | 4 bigsnpr-1.6.1/bigsnpr/man/snp_MAX3.Rd | 2 bigsnpr-1.6.1/bigsnpr/man/snp_beagleImpute.Rd | 4 bigsnpr-1.6.1/bigsnpr/man/snp_clumping.Rd | 3 bigsnpr-1.6.1/bigsnpr/man/snp_ldsc.Rd | 186 +++++++-------- bigsnpr-1.6.1/bigsnpr/man/snp_modifyBuild.Rd | 4 bigsnpr-1.6.1/bigsnpr/man/snp_plinkIBDQC.Rd | 7 bigsnpr-1.6.1/bigsnpr/man/snp_plinkKINGQC.Rd | 2 bigsnpr-1.6.1/bigsnpr/man/snp_plinkQC.Rd | 12 - bigsnpr-1.6.1/bigsnpr/man/snp_scaleBinom.Rd | 6 bigsnpr-1.6.1/bigsnpr/man/snp_thr_correct.Rd |only bigsnpr-1.6.1/bigsnpr/src/RcppExports.cpp | 46 ++- bigsnpr-1.6.1/bigsnpr/src/bed-fun.cpp | 29 +- bigsnpr-1.6.1/bigsnpr/src/ldpred2-auto.cpp | 17 - bigsnpr-1.6.1/bigsnpr/src/ldpred2-sampling.cpp |only bigsnpr-1.6.1/bigsnpr/tests/testthat/test-2-corr.R | 2 bigsnpr-1.6.1/bigsnpr/tests/testthat/test-3-plink-QC.R | 37 +-- bigsnpr-1.6.1/bigsnpr/tests/testthat/test-6-PRS.R | 30 ++ bigsnpr-1.6.1/bigsnpr/tests/testthat/test-7-OpenMP.R | 9 bigsnpr-1.6.1/bigsnpr/tests/testthat/test-8-LDpred2.R | 30 ++ 44 files changed, 598 insertions(+), 399 deletions(-)
Title: Boost C++ Header Files
Description: Boost provides free peer-reviewed portable C++ source
libraries. A large part of Boost is provided as C++ template code
which is resolved entirely at compile-time without linking. This
package aims to provide the most useful subset of Boost libraries
for template use among CRAN packages. By placing these libraries in
this package, we offer a more efficient distribution system for CRAN
as replication of this code in the sources of other packages is
avoided. As of release 1.75.0-0, the following Boost libraries are
included: 'accumulators' 'algorithm' 'align' 'any' 'atomic' 'beast'
'bimap' 'bind' 'circular_buffer' 'compute' 'concept' 'config'
'container' 'date_time' 'detail' 'dynamic_bitset' 'exception'
'flyweight' 'foreach' 'functional' 'fusion' 'geometry' 'graph' 'heap'
'icl' 'integer' 'interprocess' 'intrusive' 'io' 'iostreams'
'iterator' 'math' 'move' 'mp11' 'mpl' 'multiprecision' 'numeric'
'pending' 'phoenix' 'polygon' 'preprocessor' 'propery_tree' 'random'
'range' 'scope_exit' 'smart_ptr' 'sort' 'spirit' 'tuple'
'type_traits' 'typeof' 'unordered' 'utility' 'uuid'.
Author: Dirk Eddelbuettel, John W. Emerson and Michael J. Kane
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between BH versions 1.72.0-3 dated 2020-01-08 and 1.75.0-0 dated 2021-01-11
BH-1.72.0-3/BH/inst/include/boost/asio/detail/io_object_executor.hpp |only BH-1.72.0-3/BH/inst/include/boost/atomic/detail/atomic_flag.hpp |only BH-1.72.0-3/BH/inst/include/boost/atomic/detail/atomic_template.hpp |only BH-1.72.0-3/BH/inst/include/boost/atomic/detail/caps_gcc_alpha.hpp |only BH-1.72.0-3/BH/inst/include/boost/atomic/detail/caps_gcc_arm.hpp |only BH-1.72.0-3/BH/inst/include/boost/atomic/detail/caps_gcc_ppc.hpp |only BH-1.72.0-3/BH/inst/include/boost/atomic/detail/caps_gcc_sparc.hpp |only BH-1.72.0-3/BH/inst/include/boost/atomic/detail/caps_gcc_x86.hpp |only BH-1.72.0-3/BH/inst/include/boost/atomic/detail/caps_msvc_arm.hpp |only BH-1.72.0-3/BH/inst/include/boost/atomic/detail/caps_msvc_x86.hpp |only BH-1.72.0-3/BH/inst/include/boost/atomic/detail/hwcaps_gcc_arm.hpp |only BH-1.72.0-3/BH/inst/include/boost/atomic/detail/hwcaps_gcc_ppc.hpp |only BH-1.72.0-3/BH/inst/include/boost/atomic/detail/hwcaps_gcc_x86.hpp |only 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| 52 BH-1.75.0-0/BH/inst/include/boost/geometry/strategies/cartesian/envelope_point.hpp | 104 BH-1.75.0-0/BH/inst/include/boost/geometry/strategies/cartesian/envelope_segment.hpp | 88 BH-1.75.0-0/BH/inst/include/boost/geometry/strategies/cartesian/expand_box.hpp | 62 BH-1.75.0-0/BH/inst/include/boost/geometry/strategies/cartesian/expand_point.hpp | 118 BH-1.75.0-0/BH/inst/include/boost/geometry/strategies/cartesian/expand_segment.hpp | 64 BH-1.75.0-0/BH/inst/include/boost/geometry/strategies/cartesian/index.hpp | 15 BH-1.75.0-0/BH/inst/include/boost/geometry/strategies/cartesian/intersection.hpp | 298 BH-1.75.0-0/BH/inst/include/boost/geometry/strategies/cartesian/point_in_poly_winding.hpp | 6 BH-1.75.0-0/BH/inst/include/boost/geometry/strategies/cartesian/point_order.hpp | 10 BH-1.75.0-0/BH/inst/include/boost/geometry/strategies/cartesian/side_by_triangle.hpp | 32 BH-1.75.0-0/BH/inst/include/boost/geometry/strategies/cartesian/turn_in_ring_winding.hpp |only 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BH-1.75.0-0/BH/inst/include/boost/geometry/strategies/distance.hpp | 45 BH-1.75.0-0/BH/inst/include/boost/geometry/strategies/distance_result.hpp | 190 BH-1.75.0-0/BH/inst/include/boost/geometry/strategies/envelope |only BH-1.75.0-0/BH/inst/include/boost/geometry/strategies/envelope.hpp | 43 BH-1.75.0-0/BH/inst/include/boost/geometry/strategies/expand |only BH-1.75.0-0/BH/inst/include/boost/geometry/strategies/expand.hpp | 38 BH-1.75.0-0/BH/inst/include/boost/geometry/strategies/geographic.hpp |only BH-1.75.0-0/BH/inst/include/boost/geometry/strategies/geographic/area.hpp | 225 BH-1.75.0-0/BH/inst/include/boost/geometry/strategies/geographic/azimuth.hpp | 32 BH-1.75.0-0/BH/inst/include/boost/geometry/strategies/geographic/buffer_point_circle.hpp | 12 BH-1.75.0-0/BH/inst/include/boost/geometry/strategies/geographic/distance_cross_track.hpp | 4 BH-1.75.0-0/BH/inst/include/boost/geometry/strategies/geographic/distance_cross_track_box_box.hpp | 4 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BH-1.75.0-0/BH/inst/include/boost/geometry/strategies/line_interpolate.hpp | 13 BH-1.75.0-0/BH/inst/include/boost/geometry/strategies/normalize.hpp | 25 BH-1.75.0-0/BH/inst/include/boost/geometry/strategies/point_order.hpp | 12 BH-1.75.0-0/BH/inst/include/boost/geometry/strategies/relate.hpp | 22 BH-1.75.0-0/BH/inst/include/boost/geometry/strategies/side.hpp | 14 BH-1.75.0-0/BH/inst/include/boost/geometry/strategies/spherical.hpp |only BH-1.75.0-0/BH/inst/include/boost/geometry/strategies/spherical/area.hpp | 188 BH-1.75.0-0/BH/inst/include/boost/geometry/strategies/spherical/azimuth.hpp | 13 BH-1.75.0-0/BH/inst/include/boost/geometry/strategies/spherical/compare.hpp | 30 BH-1.75.0-0/BH/inst/include/boost/geometry/strategies/spherical/distance_cross_track.hpp | 19 BH-1.75.0-0/BH/inst/include/boost/geometry/strategies/spherical/distance_cross_track_box_box.hpp | 21 BH-1.75.0-0/BH/inst/include/boost/geometry/strategies/spherical/distance_cross_track_point_box.hpp | 23 BH-1.75.0-0/BH/inst/include/boost/geometry/strategies/spherical/distance_segment_box.hpp | 34 BH-1.75.0-0/BH/inst/include/boost/geometry/strategies/spherical/envelope.hpp | 141 BH-1.75.0-0/BH/inst/include/boost/geometry/strategies/spherical/envelope_box.hpp | 75 BH-1.75.0-0/BH/inst/include/boost/geometry/strategies/spherical/envelope_multipoint.hpp | 372 BH-1.75.0-0/BH/inst/include/boost/geometry/strategies/spherical/envelope_point.hpp | 104 BH-1.75.0-0/BH/inst/include/boost/geometry/strategies/spherical/envelope_segment.hpp | 439 BH-1.75.0-0/BH/inst/include/boost/geometry/strategies/spherical/expand_box.hpp | 168 BH-1.75.0-0/BH/inst/include/boost/geometry/strategies/spherical/expand_point.hpp | 226 BH-1.75.0-0/BH/inst/include/boost/geometry/strategies/spherical/expand_segment.hpp | 111 BH-1.75.0-0/BH/inst/include/boost/geometry/strategies/spherical/index.hpp | 15 BH-1.75.0-0/BH/inst/include/boost/geometry/strategies/spherical/intersection.hpp | 14 BH-1.75.0-0/BH/inst/include/boost/geometry/strategies/spherical/point_in_point.hpp | 9 BH-1.75.0-0/BH/inst/include/boost/geometry/strategies/spherical/point_in_poly_winding.hpp | 6 BH-1.75.0-0/BH/inst/include/boost/geometry/strategies/spherical/point_order.hpp | 14 BH-1.75.0-0/BH/inst/include/boost/geometry/strategies/spherical/ssf.hpp | 7 BH-1.75.0-0/BH/inst/include/boost/geometry/strategies/strategies.hpp | 60 BH-1.75.0-0/BH/inst/include/boost/geometry/strategies/strategy_transform.hpp | 2 BH-1.75.0-0/BH/inst/include/boost/geometry/strategies/transform.hpp | 14 BH-1.75.0-0/BH/inst/include/boost/geometry/strategies/within.hpp | 14 BH-1.75.0-0/BH/inst/include/boost/geometry/strategy |only BH-1.75.0-0/BH/inst/include/boost/geometry/util/add_const_if_c.hpp | 42 BH-1.75.0-0/BH/inst/include/boost/geometry/util/bare_type.hpp | 37 BH-1.75.0-0/BH/inst/include/boost/geometry/util/calculation_type.hpp | 38 BH-1.75.0-0/BH/inst/include/boost/geometry/util/combine_if.hpp | 9 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Title: Adaptive Weights Smoothing
Description: We provide a collection of R-functions implementing
adaptive smoothing procedures in 1D, 2D and 3D. This includes the
Propagation-Separation Approach to adaptive smoothing,
the Intersecting Confidence Intervals (ICI), variational approaches and a non-local means filter.
The package is described in detail in Polzehl J, Papafitsoros K, Tabelow K (2020).
Patch-Wise Adaptive Weights Smoothing in R. Journal of Statistical Software, 95(6), 1-27.
<doi:10.18637/jss.v095.i06>,
Usage of the package in neuroimaging is illustrated in Polzehl and Tabelow (2019),
Magnetic Resonance Brain Imaging, Appendix A, Springer, Use R! Series.
<doi:10.1007/978-3-030-29184-6_6>.
Author: Joerg Polzehl [aut, cre],
Felix Anker [ctb]
Maintainer: Joerg Polzehl <joerg.polzehl@wias-berlin.de>
Diff between aws versions 2.5 dated 2020-10-02 and 2.5-1 dated 2021-01-11
DESCRIPTION | 10 +++++----- MD5 | 14 +++++++------- build/partial.rdb |binary build/vignette.rds |binary inst/doc/aws-Example.Rnw | 2 +- inst/doc/aws-Example.pdf |binary src/Makevars | 1 - vignettes/aws-Example.Rnw | 2 +- 8 files changed, 14 insertions(+), 15 deletions(-)
Title: Adaptive Smoothing of Digital Images
Description: Implements tools for manipulation of digital
images and the Propagation Separation approach
by Polzehl and Spokoiny (2006) <DOI:10.1007/s00440-005-0464-1>
for smoothing digital images, see Polzehl and Tabelow (2007)
<DOI:10.18637/jss.v019.i01>.
Author: Karsten Tabelow <tabelow@wias-berlin.de>,
Joerg Polzehl <polzehl@wias-berlin.de>
Maintainer: Karsten Tabelow <tabelow@wias-berlin.de>
Diff between adimpro versions 0.9.2 dated 2019-11-14 and 0.9.3 dated 2021-01-11
DESCRIPTION | 8 ++++---- MD5 | 18 +++++++++--------- src/Makevars | 1 - src/aniso.f | 8 ++------ src/awsimage.f | 11 +++-------- src/awspimage.f | 2 -- src/demosaic.f | 2 +- src/misc.f | 1 - src/segment.f | 1 - src/smsensor.f | 4 ---- 10 files changed, 19 insertions(+), 37 deletions(-)
Title: Add Tooltips to 'R markdown' Documents or 'Shiny' Apps
Description: 'Htmlwidget' of 'Tippyjs' to add tooltips to 'Shiny' apps and 'R markdown' documents.
Author: John Coene [aut, cre]
Maintainer: John Coene <jcoenep@gmail.com>
Diff between tippy versions 0.0.1 dated 2018-07-01 and 0.1.0 dated 2021-01-11
tippy-0.0.1/tippy/inst/htmlwidgets/lib/tippyjs-2.5.2 |only tippy-0.0.1/tippy/man/tippy.Rd |only tippy-0.0.1/tippy/man/use_tippy.Rd |only tippy-0.1.0/tippy/DESCRIPTION | 10 tippy-0.1.0/tippy/LICENSE | 4 tippy-0.1.0/tippy/MD5 | 31 +- tippy-0.1.0/tippy/NAMESPACE | 20 - tippy-0.1.0/tippy/NEWS.md |only tippy-0.1.0/tippy/R/tippy.R | 248 +++++++++---------- tippy-0.1.0/tippy/R/use_tippy.R | 152 ++++++----- tippy-0.1.0/tippy/R/utils.R |only tippy-0.1.0/tippy/README.md | 87 +----- tippy-0.1.0/tippy/inst/htmlwidgets/lib/tippy |only tippy-0.1.0/tippy/inst/htmlwidgets/tippy.js | 78 ++--- tippy-0.1.0/tippy/inst/htmlwidgets/tippy.yaml | 16 - tippy-0.1.0/tippy/man/figures |only tippy-0.1.0/tippy/man/tippy-shiny.Rd | 60 ++-- tippy-0.1.0/tippy/man/tippy_funcs.Rd |only tippy-0.1.0/tippy/man/use_tippy_funcs.Rd |only 19 files changed, 346 insertions(+), 360 deletions(-)
Title: Create Visual Predictive Checks
Description: Visual predictive checks are a commonly used diagnostic plot in pharmacometrics, showing how certain statistics (percentiles) for observed data compare to those same statistics for data simulated from a model. The package can generate VPCs for continuous, categorical, censored, and (repeated) time-to-event data.
Author: Ron Keizer <ronkeizer@gmail.com>
Maintainer: Ron Keizer <ronkeizer@gmail.com>
Diff between vpc versions 1.2.1 dated 2020-06-01 and 1.2.2 dated 2021-01-11
DESCRIPTION | 8 ++++---- MD5 | 15 ++++++++------- NAMESPACE | 1 + NEWS.md | 4 ++++ R/plot_vpc.R | 20 ++++++++++---------- R/vpc.R | 12 +++++++++++- R/zzz.R | 3 ++- man/vpc.Rd | 3 +++ tests/test-scales.R |only 9 files changed, 43 insertions(+), 23 deletions(-)
Title: Display 'HTML' Elements on Full Screen in 'Shiny' Apps
Description: In 'Shiny' apps, it is sometimes useful to see a plot or a
table in full screen. Using 'Shinyfullscreen', you can easily designate
the 'HTML' elements that can be displayed on fullscreen and use buttons to
trigger the fullscreen view.
Author: Etienne Bacher [aut, cre, cph]
Maintainer: Etienne Bacher <etienne.bacher@protonmail.com>
Diff between shinyfullscreen versions 1.0.0 dated 2020-12-16 and 1.1.0 dated 2021-01-11
DESCRIPTION | 7 +++--- MD5 | 18 ++++++++++------ NEWS.md |only R/fullscreen_this.R | 3 +- R/fullscreen_those.R | 3 +- README.md | 11 ++++++---- tests/testthat/_snaps |only tests/testthat/test-fullscreen_all.R | 25 +++++------------------ tests/testthat/test-fullscreen_this.R | 35 ++++++++------------------------- tests/testthat/test-fullscreen_those.R | 20 +++++------------- 10 files changed, 47 insertions(+), 75 deletions(-)
More information about shinyfullscreen at CRAN
Permanent link
Title: Authentication Services for Azure Active Directory
Description: Provides Azure Active Directory (AAD) authentication functionality for R users of Microsoft's 'Azure' cloud <https://azure.microsoft.com/>. Use this package to obtain 'OAuth' 2.0 tokens for services including Azure Resource Manager, Azure Storage and others. It supports both AAD v1.0 and v2.0, as well as multiple authentication methods, including device code and resource owner grant. Tokens are cached in a user-specific directory obtained using the 'rappdirs' package. The interface is based on the 'OAuth' framework in the 'httr' package, but customised and streamlined for Azure. Part of the 'AzureR' family of packages.
Author: Hong Ooi [aut, cre],
httr development team [ctb] (Original OAuth listener code),
Scott Holden [ctb] (Advice on AAD authentication),
Chris Stone [ctb] (Advice on AAD authentication),
Microsoft [cph]
Maintainer: Hong Ooi <hongooi73@gmail.com>
Diff between AzureAuth versions 1.2.5 dated 2020-10-12 and 1.3.0 dated 2021-01-11
DESCRIPTION | 8 +-- LICENSE | 2 MD5 | 30 +++++------ NEWS.md | 5 + R/AzureToken.R | 33 ++++++++---- R/initfuncs.R | 1 R/jwt.R | 12 +++- R/normalize.R | 8 +-- R/token.R | 14 ++++- man/AzureR_dir.Rd | 2 man/AzureToken.Rd | 22 +------- man/authorization.Rd | 20 ++++++- man/get_azure_token.Rd | 88 +++++++++++++++++++++++++--------- man/guid.Rd | 4 - tests/testthat/test11_v1_token_misc.R | 8 +-- tests/testthat/test21_v2_token_misc.R | 22 ++++++-- 16 files changed, 184 insertions(+), 95 deletions(-)
Title: Global Sensitivity Analysis of Model Outputs
Description: A collection of functions for factor screening, global sensitivity analysis and robustness analysis. Most of the functions have to be applied on model with scalar output, but several functions support multi-dimensional outputs.
Author: Bertrand Iooss, Sebastien Da Veiga, Alexandre Janon and Gilles Pujol, with contributions from Baptiste Broto, Khalid Boumhaout, Thibault Delage, Reda El Amri, Jana Fruth, Laurent Gilquin, Joseph Guillaume, Marouane Il Idrissi, Loic Le Gratiet, Paul Lemaitre, Amandine Marrel, Anouar Meynaoui, Barry L. Nelson, Filippo Monari, Roelof Oomen, Oldrich Rakovec, Bernardo Ramos, Olivier Roustant, Eunhye Song, Jeremy Staum, Roman Sueur, Taieb Touati, Frank Weber
Maintainer: Bertrand Iooss <biooss@yahoo.fr>
Diff between sensitivity versions 1.23.1 dated 2020-12-08 and 1.24.0 dated 2021-01-11
DESCRIPTION | 17 - MD5 | 19 + NAMESPACE | 26 +- NEWS | 9 R/emvd.R |only R/lmg.R | 468 +++++++++++++++++++++++++++++++++++++-------- man/emvd.Rd |only man/lmg.Rd |only man/pcc.Rd | 2 man/sensitivity-package.Rd | 10 man/shapleyPermEx.Rd | 2 man/src.Rd | 2 12 files changed, 444 insertions(+), 111 deletions(-)
Title: Locate Trans and Intersex-Friendly Toilets
Description: Access the 'Refuge' API, a web-application for locating trans and
intersex-friendly restrooms, including unisex and accessible restrooms.
Includes data on the location of restrooms, along with directions,
comments, user ratings and amenities. Coverage is global, but data is
most comprehensive in the United States.
See <https://www.refugerestrooms.org/api/docs/> for full API documentation.
Author: Evan Odell [aut, cre] (<https://orcid.org/0000-0003-1845-808X>)
Maintainer: Evan Odell <evanodell91@gmail.com>
Diff between refuge versions 0.3.0 dated 2018-12-03 and 0.3.3 dated 2021-01-11
refuge-0.3.0/refuge/R/utils-ada.R |only refuge-0.3.0/refuge/R/utils-unisex.R |only refuge-0.3.3/refuge/DESCRIPTION | 11 refuge-0.3.3/refuge/MD5 | 50 - refuge-0.3.3/refuge/NEWS.md | 11 refuge-0.3.3/refuge/R/all_bathrooms.R | 11 refuge-0.3.3/refuge/R/bathroom_dates.R | 13 refuge-0.3.3/refuge/R/location.R | 14 refuge-0.3.3/refuge/R/refuge-package.R | 8 refuge-0.3.3/refuge/R/search.R | 11 refuge-0.3.3/refuge/R/utils-ada-unisex.R |only refuge-0.3.3/refuge/R/utils-tidy.R | 2 refuge-0.3.3/refuge/README.md | 88 -- refuge-0.3.3/refuge/build/vignette.rds |binary refuge-0.3.3/refuge/inst/doc/introduction.R | 86 +- refuge-0.3.3/refuge/inst/doc/introduction.Rmd | 15 refuge-0.3.3/refuge/inst/doc/introduction.html | 530 +++------------- refuge-0.3.3/refuge/man/refuge-package.Rd | 11 refuge-0.3.3/refuge/man/rfg_all_restrooms.Rd | 11 refuge-0.3.3/refuge/man/rfg_date.Rd | 13 refuge-0.3.3/refuge/man/rfg_location.Rd | 13 refuge-0.3.3/refuge/man/rfg_search.Rd | 12 refuge-0.3.3/refuge/tests/testthat/test-all-restrooms.R | 5 refuge-0.3.3/refuge/tests/testthat/test-dates.R | 8 refuge-0.3.3/refuge/tests/testthat/test-location.R | 11 refuge-0.3.3/refuge/tests/testthat/test-search.R | 10 refuge-0.3.3/refuge/vignettes/introduction.Rmd | 15 refuge-0.3.3/refuge/vignettes/us-map.png |only 28 files changed, 318 insertions(+), 641 deletions(-)
Title: Estimate Gaussian Mixture Vector Autoregressive Model
Description: Unconstrained and constrained maximum likelihood estimation of structural and reduced form
Gaussian mixture vector autoregressive (GMVAR) model, quantile residual tests, graphical diagnostics,
simulations, forecasting, and estimation of generalized impulse response function.
Leena Kalliovirta, Mika Meitz, Pentti Saikkonen (2016) <doi:10.1016/j.jeconom.2016.02.012>,
Savi Virolainen (2020) <arXiv:2007.04713>.
Author: Savi Virolainen [aut, cre]
Maintainer: Savi Virolainen <savi.virolainen@helsinki.fi>
Diff between gmvarkit versions 1.3.0 dated 2020-12-16 and 1.4.0 dated 2021-01-11
DESCRIPTION | 11 MD5 | 162 +-- NEWS.md | 13 R/GIRF.R | 2 R/GMVARconstruction.R | 91 + R/MAINest.R | 88 + R/WaldAndLR.R | 13 R/argumentChecks.R | 66 + R/diagnosticPlot.R | 60 - R/generateParams.R | 114 +- R/geneticAlgorithm.R | 192 ++- R/loglikelihood.R | 88 + R/morePlots.R | 2 R/parameterReforms.R | 101 +- R/pickParams.R | 45 R/predictMethod.R | 23 R/printMethods.R | 27 R/quantileResidualTests.R | 25 R/quantileResiduals.R | 18 R/simulateGMVAR.R | 26 R/standardErrors.R | 11 R/uncondMoments.R | 189 +++ README.md | 6 inst/doc/intro-to-gmvarkit.Rmd | 7 inst/doc/intro-to-gmvarkit.html | 21 man/GAfit.Rd | 26 man/GMVAR.Rd | 35 man/VAR_pcovmat.Rd |only man/change_parametrization.Rd | 38 man/change_regime.Rd | 25 man/check_constraints.Rd | 16 man/check_parameters.Rd | 35 man/check_same_means.Rd |only man/cond_moment_plot.Rd | 6 man/cond_moments.Rd | 43 man/fitGMVAR.Rd | 38 man/form_boldA.Rd | 4 man/get_Sigmas.Rd |only man/get_alpha_mt.Rd | 4 man/get_boldA_eigens.Rd | 4 man/get_omega_eigens.Rd | 4 man/get_regime_autocovs.Rd | 8 man/get_regime_autocovs_int.Rd | 39 man/get_regime_means.Rd | 4 man/get_regime_means_int.Rd | 39 man/get_test_Omega.Rd | 35 man/in_paramspace.Rd | 31 man/is_stationary.Rd | 4 man/loglikelihood.Rd | 43 man/loglikelihood_int.Rd | 43 man/n_params.Rd | 16 man/pick_Am.Rd | 30 man/pick_Ami.Rd | 27 man/pick_Omegas.Rd | 3 man/pick_allA.Rd | 7 man/pick_all_phi0_A.Rd | 7 man/pick_phi0.Rd | 7 man/pick_regime.Rd | 29 man/profile_logliks.Rd | 8 man/quantile_residuals_int.Rd | 35 man/random_ind.Rd | 45 man/random_ind2.Rd | 44 man/reform_constrained_pars.Rd | 31 man/reform_structural_pars.Rd | 23 man/simulateGMVAR.Rd | 6 man/smart_ind.Rd | 51 - man/sort_W_and_lambdas.Rd |only man/sort_components.Rd | 3 man/standard_errors.Rd | 35 man/uncond_moments.Rd | 8 man/uncond_moments_int.Rd | 43 tests/testthat/test_MAINest.R | 2 tests/testthat/test_S3methods.R | 27 tests/testthat/test_argumentChecks.R | 145 ++ tests/testthat/test_generateParams.R | 14 tests/testthat/test_gmvarConstruction.R | 50 + tests/testthat/test_loglikelihood.R | 178 +++ tests/testthat/test_parameterReforms.R | 1370 +++++++++++++++------------- tests/testthat/test_quantileResidualTests.R | 51 - tests/testthat/test_quantileResiduals.R | 15 tests/testthat/test_simulateGMVAR.R | 104 +- tests/testthat/test_standardErrors.R | 14 tests/testthat/test_uncondMoments.R | 212 +++- vignettes/intro-to-gmvarkit.Rmd | 7 84 files changed, 3206 insertions(+), 1366 deletions(-)
Title: Statistical Functions for the Design of Studies with Composite
Endpoints
Description: It has been designed to calculate the required sample size in randomized clinical trials with composite endpoints. This package also includes functions to calculate the probability of observing the composite endpoint and the expected effect on the composite endpoint, among others. The methods implemented can be found in Bofill & Gómez (2019) <doi:10.1002/sim.8092> and Gómez & Lagakos (2013) <doi:10.1002/sim.5547>.
Author: Marta Bofill Roig [aut, cre], Jordi Cortes Martinez [aut], Guadalupe Gomez Melis [ctb]
Maintainer: Marta Bofill Roig <marta.bofill.roig@upc.edu>
Diff between CompAREdesign versions 1.5 dated 2020-12-09 and 1.6 dated 2021-01-11
DESCRIPTION | 10 +++++----- MD5 | 9 +++++---- R/ARE_cbe.R | 3 ++- man/ARE_cbe.Rd | 3 ++- man/CompAREdesign-package.Rd | 4 +++- man/figures |only 6 files changed, 17 insertions(+), 12 deletions(-)
Title: Analyze Cricket Performances Based on Data from Cricsheet
Description: Analyzing performances of cricketers and cricket teams
based on 'yaml' match data from Cricsheet <https://cricsheet.org/>.
Author: Tinniam V Ganesh
Maintainer: Tinniam V Ganesh <tvganesh.85@gmail.com>
Diff between yorkr versions 0.0.12 dated 2020-12-12 and 0.0.17 dated 2021-01-11
yorkr-0.0.12/yorkr/man/teamBowlingScoreCardAllOppnAllMatchesMain.Rd |only yorkr-0.0.17/yorkr/DESCRIPTION | 15 yorkr-0.0.17/yorkr/MD5 | 405 +++++----- yorkr-0.0.17/yorkr/NAMESPACE | 14 yorkr-0.0.17/yorkr/R/Untitled.R |only yorkr-0.0.17/yorkr/R/batsmanCumulativeAverageRuns.R | 6 yorkr-0.0.17/yorkr/R/batsmanCumulativeStrikeRate.R | 6 yorkr-0.0.17/yorkr/R/batsmanDismissals.R | 6 yorkr-0.0.17/yorkr/R/batsmanFoursSixes.R | 6 yorkr-0.0.17/yorkr/R/batsmanMovingAverage.R | 6 yorkr-0.0.17/yorkr/R/batsmanRunsAgainstOpposition.R | 6 yorkr-0.0.17/yorkr/R/batsmanRunsVenue.R | 6 yorkr-0.0.17/yorkr/R/batsmanRunsVsStrikeRate.R | 6 yorkr-0.0.17/yorkr/R/batsmansRunsPredict.R | 6 yorkr-0.0.17/yorkr/R/batsmansRunsVsDeliveries.R | 6 yorkr-0.0.17/yorkr/R/bowlerCumulativeAvgEconRate.R | 6 yorkr-0.0.17/yorkr/R/bowlerCumulativeAvgWickets.R | 6 yorkr-0.0.17/yorkr/R/bowlerDeliveryWickets.R | 6 yorkr-0.0.17/yorkr/R/bowlerMeanEconomyRate.R | 6 yorkr-0.0.17/yorkr/R/bowlerMeanRunsConceded.R | 6 yorkr-0.0.17/yorkr/R/bowlerMovingAverage.R | 6 yorkr-0.0.17/yorkr/R/bowlerWicketPlot.R | 6 yorkr-0.0.17/yorkr/R/bowlerWicketsAgainstOppn.R | 6 yorkr-0.0.17/yorkr/R/bowlerWicketsVenue.R | 6 yorkr-0.0.17/yorkr/R/bowlerWktsPredict.R | 6 yorkr-0.0.17/yorkr/R/convertAllYaml2RDataframes.R | 6 yorkr-0.0.17/yorkr/R/convertAllYaml2RDataframesT20.R | 6 yorkr-0.0.17/yorkr/R/convertYaml2RDataframe.R | 6 yorkr-0.0.17/yorkr/R/convertYaml2RDataframeT20.R | 6 yorkr-0.0.17/yorkr/R/getAllMatchesAllOpposition.R | 6 yorkr-0.0.17/yorkr/R/getAllMatchesBetweenTeams.R | 5 yorkr-0.0.17/yorkr/R/getBBLBattingDetails.R |only yorkr-0.0.17/yorkr/R/getBBLBowlingDetails.R |only yorkr-0.0.17/yorkr/R/getBatsmanDetails.R | 6 yorkr-0.0.17/yorkr/R/getBowlerWicketDetails.R | 6 yorkr-0.0.17/yorkr/R/getDeliveryWickets.R | 6 yorkr-0.0.17/yorkr/R/getIPLBattingDetails.R |only yorkr-0.0.17/yorkr/R/getIPLBowlingDetails.R |only yorkr-0.0.17/yorkr/R/getMatchDetails.R | 6 yorkr-0.0.17/yorkr/R/getNTBBattingDetails.R |only yorkr-0.0.17/yorkr/R/getNTBBowlingDetails.R |only yorkr-0.0.17/yorkr/R/getODIBattingDetails.R |only yorkr-0.0.17/yorkr/R/getODIBowlingDetails.R |only yorkr-0.0.17/yorkr/R/getPSLBattingDetails.R |only yorkr-0.0.17/yorkr/R/getPSLBowlingDetails.R |only yorkr-0.0.17/yorkr/R/getT20BattingDetails.R |only yorkr-0.0.17/yorkr/R/getT20BowlingDetails.R |only yorkr-0.0.17/yorkr/R/getTeamBattingDetails.R | 6 yorkr-0.0.17/yorkr/R/getTeamBowlingDetails.R | 6 yorkr-0.0.17/yorkr/R/getWBBBattingDerails.R |only yorkr-0.0.17/yorkr/R/getWBBBowlingDetails.R |only yorkr-0.0.17/yorkr/R/matchWormChart.R | 6 yorkr-0.0.17/yorkr/R/parseYamlOver.R | 6 yorkr-0.0.17/yorkr/R/plotWinLossBetweenTeams.R | 6 yorkr-0.0.17/yorkr/R/rankBBLBatsmen.R | 40 yorkr-0.0.17/yorkr/R/rankBBLBowlers.R | 84 -- yorkr-0.0.17/yorkr/R/rankIPLBatsmen.R | 50 - yorkr-0.0.17/yorkr/R/rankIPLBowlers.R | 89 -- yorkr-0.0.17/yorkr/R/rankNTBBatsmen.R | 49 - yorkr-0.0.17/yorkr/R/rankNTBBowlers.R | 79 - yorkr-0.0.17/yorkr/R/rankODIBatsmen.R | 48 - yorkr-0.0.17/yorkr/R/rankODIBowlers.R | 86 -- yorkr-0.0.17/yorkr/R/rankPSLBatsmen.R | 50 - yorkr-0.0.17/yorkr/R/rankPSLBowlers.R | 82 -- yorkr-0.0.17/yorkr/R/rankT20Batsmen.R | 52 - yorkr-0.0.17/yorkr/R/rankT20Bowlers.R | 81 -- yorkr-0.0.17/yorkr/R/rankWBBBatsmen.R | 52 - yorkr-0.0.17/yorkr/R/rankWBBBowlers.R | 86 -- yorkr-0.0.17/yorkr/R/saveAllMatchesAllOpposition.R | 6 yorkr-0.0.17/yorkr/R/saveAllMatchesAllOppositionBBLT20.R | 6 yorkr-0.0.17/yorkr/R/saveAllMatchesAllOppositionIPLT20.R | 6 yorkr-0.0.17/yorkr/R/saveAllMatchesAllOppositionNTBT20.R | 6 yorkr-0.0.17/yorkr/R/saveAllMatchesAllOppositionPSLT20.R | 6 yorkr-0.0.17/yorkr/R/saveAllMatchesAllOppositionWBBT20.R | 6 yorkr-0.0.17/yorkr/R/saveAllMatchesBetween2BBLTeams.R | 6 yorkr-0.0.17/yorkr/R/saveAllMatchesBetween2IPLTeams.R | 6 yorkr-0.0.17/yorkr/R/saveAllMatchesBetween2NTBTeams.R | 6 yorkr-0.0.17/yorkr/R/saveAllMatchesBetween2PSLTeams.R | 6 yorkr-0.0.17/yorkr/R/saveAllMatchesBetween2WBBTeams.R | 6 yorkr-0.0.17/yorkr/R/saveAllMatchesBetweenTeams.R | 6 yorkr-0.0.17/yorkr/R/specialProc.R | 6 yorkr-0.0.17/yorkr/R/teamBatsmenPartnershipAllOppnAllMatches.R | 6 yorkr-0.0.17/yorkr/R/teamBatsmenPartnershipAllOppnAllMatchesPlot.R | 6 yorkr-0.0.17/yorkr/R/teamBatsmenPartnershipMatch.R | 6 yorkr-0.0.17/yorkr/R/teamBatsmenPartnershipOppnAllMatches.R | 6 yorkr-0.0.17/yorkr/R/teamBatsmenPartnershipOppnAllMatchesChart.R | 6 yorkr-0.0.17/yorkr/R/teamBatsmenVsBowlersAllOppnAllMatchesRept.R | 6 yorkr-0.0.17/yorkr/R/teamBatsmenVsBowlersMatch.R | 6 yorkr-0.0.17/yorkr/R/teamBatsmenVsBowlersOppnAllMatches.R | 6 yorkr-0.0.17/yorkr/R/teamBatsmenvsBowlersAllOppnAllMatchesPlot.R | 6 yorkr-0.0.17/yorkr/R/teamBattingPerfDetails.R | 6 yorkr-0.0.17/yorkr/R/teamBattingScorecardAllOppnAllMatches.R | 6 yorkr-0.0.17/yorkr/R/teamBattingScorecardMatch.R | 6 yorkr-0.0.17/yorkr/R/teamBattingScoredcardOppnAllMatches.R | 6 yorkr-0.0.17/yorkr/R/teamBowlersVsBatsmenAllOppnAllMatchesMain.R | 6 yorkr-0.0.17/yorkr/R/teamBowlersVsBatsmenAllOppnAllMatchesPlot.R | 6 yorkr-0.0.17/yorkr/R/teamBowlersVsBatsmenAllOppnAllMatchesRept.R | 6 yorkr-0.0.17/yorkr/R/teamBowlersVsBatsmenMatch.R | 6 yorkr-0.0.17/yorkr/R/teamBowlersVsBatsmenOppnAllMatches.R | 6 yorkr-0.0.17/yorkr/R/teamBowlersWicketKindOppnAllMatches.R | 6 yorkr-0.0.17/yorkr/R/teamBowlersWicketRunsOppnAllMatches.R | 6 yorkr-0.0.17/yorkr/R/teamBowlersWicketsOppnAllMatches.R | 6 yorkr-0.0.17/yorkr/R/teamBowlingPerfDetails.R | 5 yorkr-0.0.17/yorkr/R/teamBowlingPerfOppnAllMatches.R | 5 yorkr-0.0.17/yorkr/R/teamBowlingScorecardAllOppnAllMatches.R | 5 yorkr-0.0.17/yorkr/R/teamBowlingScorecardAllOppnAllMatchesMain.R | 5 yorkr-0.0.17/yorkr/R/teamBowlingScorecardMatch.R | 5 yorkr-0.0.17/yorkr/R/teamBowlingWicketKindAllOppnAllMatches.R | 5 yorkr-0.0.17/yorkr/R/teamBowlingWicketKindMatch.R | 5 yorkr-0.0.17/yorkr/R/teamBowlingWicketMatch.R | 6 yorkr-0.0.17/yorkr/R/teamBowlingWicketRunsAllOppnAllMatches.R | 6 yorkr-0.0.17/yorkr/R/teamBowlingWicketRunsMatch.R | 6 yorkr-0.0.17/yorkr/man/batsmanCumulativeAverageRuns.Rd | 2 yorkr-0.0.17/yorkr/man/batsmanCumulativeStrikeRate.Rd | 2 yorkr-0.0.17/yorkr/man/batsmanDismissals.Rd | 2 yorkr-0.0.17/yorkr/man/batsmanFoursSixes.Rd | 2 yorkr-0.0.17/yorkr/man/batsmanMovingAverage.Rd | 2 yorkr-0.0.17/yorkr/man/batsmanRunsAgainstOpposition.Rd | 2 yorkr-0.0.17/yorkr/man/batsmanRunsPredict.Rd | 2 yorkr-0.0.17/yorkr/man/batsmanRunsVenue.Rd | 2 yorkr-0.0.17/yorkr/man/batsmanRunsVsDeliveries.Rd | 2 yorkr-0.0.17/yorkr/man/batsmanRunsVsStrikeRate.Rd | 2 yorkr-0.0.17/yorkr/man/bowlerCumulativeAvgEconRate.Rd | 2 yorkr-0.0.17/yorkr/man/bowlerCumulativeAvgWickets.Rd | 2 yorkr-0.0.17/yorkr/man/bowlerDeliveryWickets.Rd | 2 yorkr-0.0.17/yorkr/man/bowlerMeanEconomyRate.Rd | 2 yorkr-0.0.17/yorkr/man/bowlerMeanRunsConceded.Rd | 2 yorkr-0.0.17/yorkr/man/bowlerMovingAverage.Rd | 2 yorkr-0.0.17/yorkr/man/bowlerWicketPlot.Rd | 2 yorkr-0.0.17/yorkr/man/bowlerWicketsAgainstOpposition.Rd | 2 yorkr-0.0.17/yorkr/man/bowlerWicketsVenue.Rd | 2 yorkr-0.0.17/yorkr/man/bowlerWktsPredict.Rd | 2 yorkr-0.0.17/yorkr/man/convertAllYaml2RDataframes.Rd | 2 yorkr-0.0.17/yorkr/man/convertAllYaml2RDataframesT20.Rd | 2 yorkr-0.0.17/yorkr/man/convertYaml2RDataframe.Rd | 2 yorkr-0.0.17/yorkr/man/convertYaml2RDataframeT20.Rd | 2 yorkr-0.0.17/yorkr/man/getAllMatchesAllOpposition.Rd | 2 yorkr-0.0.17/yorkr/man/getAllMatchesBetweenTeams.Rd | 2 yorkr-0.0.17/yorkr/man/getBBLBattingDetails.Rd |only yorkr-0.0.17/yorkr/man/getBBLBowlingDetails.Rd |only yorkr-0.0.17/yorkr/man/getBatsmanDetails.Rd | 2 yorkr-0.0.17/yorkr/man/getBowlerWicketDetails.Rd | 2 yorkr-0.0.17/yorkr/man/getDeliveryWickets.Rd | 2 yorkr-0.0.17/yorkr/man/getIPLBattingDetails.Rd |only yorkr-0.0.17/yorkr/man/getIPLBowlingDetails.Rd |only yorkr-0.0.17/yorkr/man/getMatchDetails.Rd | 2 yorkr-0.0.17/yorkr/man/getNTBBattingDetails.Rd |only yorkr-0.0.17/yorkr/man/getNTBBowlingDetails.Rd |only yorkr-0.0.17/yorkr/man/getODIBattingDetails.Rd |only yorkr-0.0.17/yorkr/man/getODIBowlingDetails.Rd |only yorkr-0.0.17/yorkr/man/getPSLBattingDetails.Rd |only yorkr-0.0.17/yorkr/man/getPSLBowlingDetails.Rd |only yorkr-0.0.17/yorkr/man/getT20BattingDetails.Rd |only yorkr-0.0.17/yorkr/man/getT20BowlingDetails.Rd |only yorkr-0.0.17/yorkr/man/getTeamBattingDetails.Rd | 2 yorkr-0.0.17/yorkr/man/getTeamBowlingDetails.Rd | 2 yorkr-0.0.17/yorkr/man/getWBBBattingDetails.Rd |only yorkr-0.0.17/yorkr/man/getWBBBowlingDetails.Rd |only yorkr-0.0.17/yorkr/man/matchWormGraph.Rd | 2 yorkr-0.0.17/yorkr/man/parseYamlOver.Rd | 2 yorkr-0.0.17/yorkr/man/plotWinLossBetweenTeams.Rd | 2 yorkr-0.0.17/yorkr/man/rankBBLBatsmen.Rd | 2 yorkr-0.0.17/yorkr/man/rankBBLBowlers.Rd | 2 yorkr-0.0.17/yorkr/man/rankIPLBatsmen.Rd | 2 yorkr-0.0.17/yorkr/man/rankIPLBowlers.Rd | 2 yorkr-0.0.17/yorkr/man/rankNTBBatsmen.Rd | 2 yorkr-0.0.17/yorkr/man/rankNTBBowlers.Rd | 2 yorkr-0.0.17/yorkr/man/rankODIBatsmen.Rd | 2 yorkr-0.0.17/yorkr/man/rankODIBowlers.Rd | 2 yorkr-0.0.17/yorkr/man/rankPSLBatsmen.Rd | 2 yorkr-0.0.17/yorkr/man/rankPSLBowlers.Rd | 2 yorkr-0.0.17/yorkr/man/rankT20Batsmen.Rd | 2 yorkr-0.0.17/yorkr/man/rankT20Bowlers.Rd | 2 yorkr-0.0.17/yorkr/man/rankWBBBatsmen.Rd | 2 yorkr-0.0.17/yorkr/man/rankWBBBowlers.Rd | 2 yorkr-0.0.17/yorkr/man/saveAllMatchesAllOpposition.Rd | 2 yorkr-0.0.17/yorkr/man/saveAllMatchesAllOppositionBBLT20.Rd | 2 yorkr-0.0.17/yorkr/man/saveAllMatchesAllOppositionIPLT20.Rd | 2 yorkr-0.0.17/yorkr/man/saveAllMatchesAllOppositionNTBT20.Rd | 2 yorkr-0.0.17/yorkr/man/saveAllMatchesAllOppositionPSLT20.Rd | 2 yorkr-0.0.17/yorkr/man/saveAllMatchesAllOppositionWBBT20.Rd | 2 yorkr-0.0.17/yorkr/man/saveAllMatchesBetween2BBLTeams.Rd | 2 yorkr-0.0.17/yorkr/man/saveAllMatchesBetween2IPLTeams.Rd | 2 yorkr-0.0.17/yorkr/man/saveAllMatchesBetween2NTBTeams.Rd | 2 yorkr-0.0.17/yorkr/man/saveAllMatchesBetween2PSLTeams.Rd | 2 yorkr-0.0.17/yorkr/man/saveAllMatchesBetween2WBBTeams.Rd | 2 yorkr-0.0.17/yorkr/man/saveAllMatchesBetweenTeams.Rd | 2 yorkr-0.0.17/yorkr/man/specialProc.Rd | 2 yorkr-0.0.17/yorkr/man/teamBatsmenPartnershiOppnAllMatches.Rd | 2 yorkr-0.0.17/yorkr/man/teamBatsmenPartnershipAllOppnAllMatches.Rd | 2 yorkr-0.0.17/yorkr/man/teamBatsmenPartnershipAllOppnAllMatchesPlot.Rd | 2 yorkr-0.0.17/yorkr/man/teamBatsmenPartnershipMatch.Rd | 2 yorkr-0.0.17/yorkr/man/teamBatsmenPartnershipOppnAllMatchesChart.Rd | 2 yorkr-0.0.17/yorkr/man/teamBatsmenVsBowlersAllOppnAllMatchesPlot.Rd | 2 yorkr-0.0.17/yorkr/man/teamBatsmenVsBowlersAllOppnAllMatchesRept.Rd | 2 yorkr-0.0.17/yorkr/man/teamBatsmenVsBowlersMatch.Rd | 2 yorkr-0.0.17/yorkr/man/teamBatsmenVsBowlersOppnAllMatches.Rd | 2 yorkr-0.0.17/yorkr/man/teamBattingPerfDetails.Rd | 2 yorkr-0.0.17/yorkr/man/teamBattingScorecardAllOppnAllMatches.Rd | 2 yorkr-0.0.17/yorkr/man/teamBattingScorecardMatch.Rd | 2 yorkr-0.0.17/yorkr/man/teamBattingScorecardOppnAllMatches.Rd | 2 yorkr-0.0.17/yorkr/man/teamBowlersVsBatsmenAllOppnAllMatchesMain.Rd | 2 yorkr-0.0.17/yorkr/man/teamBowlersVsBatsmenAllOppnAllMatchesPlot.Rd | 2 yorkr-0.0.17/yorkr/man/teamBowlersVsBatsmenAllOppnAllMatchesRept.Rd | 2 yorkr-0.0.17/yorkr/man/teamBowlersVsBatsmenMatch.Rd | 2 yorkr-0.0.17/yorkr/man/teamBowlersVsBatsmenOppnAllMatches.Rd | 2 yorkr-0.0.17/yorkr/man/teamBowlersWicketKindOppnAllMatches.Rd | 2 yorkr-0.0.17/yorkr/man/teamBowlersWicketRunsOppnAllMatches.Rd | 2 yorkr-0.0.17/yorkr/man/teamBowlersWicketsOppnAllMatches.Rd | 2 yorkr-0.0.17/yorkr/man/teamBowlingPerfDetails.Rd | 2 yorkr-0.0.17/yorkr/man/teamBowlingPerfOppnAllMatches.Rd | 2 yorkr-0.0.17/yorkr/man/teamBowlingScorecardAllOppnAllMatches.Rd | 2 yorkr-0.0.17/yorkr/man/teamBowlingScorecardAllOppnAllMatchesMain.Rd |only yorkr-0.0.17/yorkr/man/teamBowlingScorecardMatch.Rd | 2 yorkr-0.0.17/yorkr/man/teamBowlingWicketKindAllOppnAllMatches.Rd | 2 yorkr-0.0.17/yorkr/man/teamBowlingWicketKindMatch.Rd | 2 yorkr-0.0.17/yorkr/man/teamBowlingWicketMatch.Rd | 2 yorkr-0.0.17/yorkr/man/teamBowlingWicketRunsAllOppnAllMatches.Rd | 2 yorkr-0.0.17/yorkr/man/teamBowlingWicketRunsMatch.Rd | 2 219 files changed, 885 insertions(+), 1127 deletions(-)
Title: Deterministic Computation of Text Box Metrics
Description: Unlike other tools that dynamically link to the 'Cairo'
stack, 'freetypeharfbuzz' is statically linked to specific
versions of the 'FreeType' and 'harfbuzz' libraries (2.9 and 1.7.6
respectively). This ensures deterministic computation of text box
extents for situations where reproducible results are crucial (for
instance unit tests of graphics).
Author: Lionel Henry [aut, cre],
RStudio [cph],
David Turner [aut] (FreeType library),
Robert Wilhelm [aut] (FreeType library),
Werner Wilhelm [aut] (FreeType library),
Behdad Esfahbod [aut] (Harfbuzz library),
Simon Hausmann [aut] (Harfbuzz library),
Martin Hosken [aut] (Harfbuzz library),
Jonathan Kew [aut] (Harfbuzz library),
Lars Knoll [aut] (Harfbuzz library),
Werner Lemberg [aut] (Harfbuzz library),
Roozbeh Pournader [aut] (Harfbuzz library),
Owen Taylor [aut] (Harfbuzz library),
David Turner [aut] (Harfbuzz library),
Red Hat [cph] (Harfbuzz library)
Maintainer: Lionel Henry <lionel@rstudio.com>
Diff between freetypeharfbuzz versions 0.2.5 dated 2018-10-30 and 0.2.6 dated 2021-01-11
DESCRIPTION | 8 +-- MD5 | 16 +++---- NEWS.md | 4 + configure | 15 +++---- src/Makebuild | 6 +- src/Makestatic.in | 4 - tools/Makefile | 2 tools/config/config.log | 93 +++++++++++++++++++++++---------------------- tools/config/config.status | 6 +- 9 files changed, 82 insertions(+), 72 deletions(-)
More information about freetypeharfbuzz at CRAN
Permanent link
Title: Utilities for Well-Known Geometry Vectors
Description: Provides extra utilities for well-known formats in the
'wk' package that are outside the scope of that package. Utilities
to parse coordinates from data frames, plot well-known geometry
vectors, extract meta information from well-known geometry vectors,
and calculate bounding boxes are provided.
Author: Dewey Dunnington [aut, cre] (<https://orcid.org/0000-0002-9415-4582>)
Maintainer: Dewey Dunnington <dewey@fishandwhistle.net>
Diff between wkutils versions 0.1.0 dated 2020-07-30 and 0.1.1 dated 2021-01-11
DESCRIPTION | 8 - MD5 | 98 ++++++++-------- NAMESPACE | 20 --- NEWS.md | 7 + R/RcppExports.R | 56 --------- R/coords-translate.R | 32 ----- R/coords.R | 6 - R/debug.R | 7 - R/draw.R | 28 ---- R/filters.R | 20 --- R/finite.R | 12 -- R/grob.R | 16 -- R/meta.R | 6 - R/plot.R | 34 +---- R/ranges.R | 12 -- R/unnest.R | 6 - README.md | 16 +- man/coords_point_translate_wkt.Rd | 19 --- man/wkb_coords.Rd | 7 - man/wkb_debug.Rd | 7 - man/wkb_draw_points.Rd | 23 --- man/wkb_meta.Rd | 7 - man/wkb_ranges.Rd | 10 - man/wkt_grob.Rd | 10 - man/wkt_has_missing.Rd | 10 - man/wkt_plot.Rd | 16 -- man/wkt_set_srid.Rd | 13 -- man/wkt_unnest.Rd | 7 - man/wkutils-package.Rd | 2 src/RcppExports.cpp | 191 --------------------------------- src/coords-translate.cpp | 26 ---- src/coords.cpp | 8 - src/debug.cpp | 8 - src/filters.cpp | 37 ------ src/finite.cpp | 16 -- src/meta.cpp | 8 - src/ranges.cpp | 15 -- src/unnest.cpp | 17 -- tests/testthat/Rplots.pdf |binary tests/testthat/test-coords-translate.R | 25 ---- tests/testthat/test-coords.R | 17 -- tests/testthat/test-debug.R | 11 - tests/testthat/test-draw.R | 9 - tests/testthat/test-filters.R | 28 ---- tests/testthat/test-finite.R | 14 -- tests/testthat/test-grob.R | 11 - tests/testthat/test-meta.R | 15 -- tests/testthat/test-plot.R | 4 tests/testthat/test-ranges.R | 26 ---- tests/testthat/test-unnest.R | 22 --- 50 files changed, 97 insertions(+), 926 deletions(-)
Title: Linear Model Evaluation with Randomized Residuals in a
Permutation Procedure
Description: Linear model calculations are made for many random versions of data.
Using residual randomization in a permutation procedure, sums of squares are
calculated over many permutations to generate empirical probability distributions
for evaluating model effects. This packaged is described by
Collyer & Adams (2018) <doi:10.1111/2041-210X.13029>. Additionally, coefficients, statistics, fitted values, and residuals generated over many
permutations can be used for various procedures including pairwise tests, prediction, classification, and
model comparison. This package should provide most tools one could need for the analysis of
high-dimensional data, especially in ecology and evolutionary biology, but certainly other fields, as well.
Author: Michael Collyer [aut, cre],
Dean Adams [aut]
Maintainer: Michael Collyer <mlcollyer@gmail.com>
Diff between RRPP versions 0.6.1 dated 2020-06-24 and 0.6.2 dated 2021-01-11
DESCRIPTION | 10 MD5 | 105 +-- NAMESPACE | 4 NEWS.md | 19 R/RRPP.support.code.r | 267 ++++++--- R/RRPP.utils.r | 1079 ++++++++++++++++++++++++++----------- R/add.tree.r | 14 R/anova.lm.rrpp.r | 40 - R/coef.lm.rrpp.r | 44 - R/lm.rrpp.r | 369 ++++++++---- R/manova.update.r | 231 +++++-- R/model.comparison.r | 147 +++-- R/ordinate.r | 246 +++++--- R/pairwise.r | 263 ++++++--- R/predict.lm.rrpp.r | 163 ++--- R/prep.lda.r | 72 +- R/reveal.model.designs.r | 9 R/shared.support.code.r | 131 ++++ R/trajectory.analysis.r | 151 +++-- build/vignette.rds |binary inst/doc/ANOVA.vs.MANOVA.R | 5 inst/doc/ANOVA.vs.MANOVA.Rmd | 10 inst/doc/ANOVA.vs.MANOVA.html | 163 ++--- inst/doc/Using.RRPP.html | 560 +++++++++---------- man/PlethMorph.Rd | 20 man/Pupfish.Rd | 12 man/PupfishHeads.Rd | 15 man/RRPP-package.Rd | 30 - man/add.trajectories.Rd | 60 +- man/add.tree.Rd | 14 man/anova.lm.rrpp.Rd | 37 - man/coef.lm.rrpp.Rd | 43 - man/lm.rrpp.Rd | 360 +++++++----- man/manova.update.Rd | 189 ++++-- man/model.comparison.Rd | 129 ++-- man/model.frame.lm.rrpp.Rd |only man/model.matrix.lm.rrpp.Rd |only man/motionpaths.Rd | 3 man/ordinate.Rd | 232 +++++-- man/pairwise.Rd | 219 +++++-- man/plot.lm.rrpp.Rd | 6 man/plot.ordinate.Rd | 15 man/plot.predict.lm.rrpp.Rd | 29 man/plot.trajectory.analysis.Rd | 33 - man/predict.lm.rrpp.Rd | 48 + man/prep.lda.Rd | 72 +- man/reveal.model.designs.Rd | 9 man/rrpp.data.frame.Rd | 21 man/summary.manova.lm.rrpp.Rd | 3 man/summary.pairwise.Rd | 78 ++ man/summary.trajectory.analysis.Rd | 18 man/terms.lm.rrpp.Rd |only man/trajectory.analysis.Rd | 130 +++- man/vec.cor.matrix.Rd | 3 vignettes/ANOVA.vs.MANOVA.Rmd | 10 55 files changed, 3904 insertions(+), 2036 deletions(-)
Title: Empirical Dynamic Modeling ('EDM')
Description: An implementation of 'EDM' algorithms based on research software developed for internal use at the Sugihara Lab ('UCSD/SIO'). The package is implemented with 'Rcpp' wrappers around the 'cppEDM' library. It implements the 'simplex' projection method from Sugihara & May (1990) <doi:10.1038/344734a0>, the 'S-map' algorithm from Sugihara (1994) <doi:10.1098/rsta.1994.0106>, convergent cross mapping described in Sugihara et al. (2012) <doi:10.1126/science.1227079>, and, 'multiview embedding' described in Ye & Sugihara (2016) <doi:10.1126/science.aag0863>.
Author: Joseph Park [aut, cre] (<https://orcid.org/0000-0001-5411-1409>),
Cameron Smith [aut],
George Sugihara [aut, ccp] (<https://orcid.org/0000-0002-2863-6946>),
Ethan Deyle [aut] (<https://orcid.org/0000-0001-8704-8434>),
Erik Saberski [ctb] (<https://orcid.org/0000-0002-6475-6187>),
Hao Ye [ctb] (<https://orcid.org/0000-0002-8630-1458>),
The Regents of the University of California [cph]
Maintainer: Joseph Park <JosephPark@IEEE.org>
Diff between rEDM versions 1.7.3 dated 2021-01-04 and 1.7.4 dated 2021-01-11
DESCRIPTION | 8 +-- MD5 | 8 +-- src/cppEDM/src/EDM_Formatting.cc | 90 ++++++++++----------------------------- src/cppEDM/src/Parameter.cc | 2 vignettes/rEDM-tutorial.html | 18 +++---- 5 files changed, 43 insertions(+), 83 deletions(-)
Title: Random Forests for Dependent Data
Description: Fits non-linear regression models on dependant data with Generalised Least Square (GLS) based Random Forest (RF-GLS) detailed in Saha, Basu and Datta (2020) <arXiv:2007.15421>.
Author: Arkajyoti Saha [aut, cre],
Sumanta Basu [aut],
Abhirup Datta [aut]
Maintainer: Arkajyoti Saha <arkajyotisaha93@gmail.com>
Diff between RandomForestsGLS versions 0.1.0 dated 2021-01-08 and 0.1.1 dated 2021-01-11
DESCRIPTION | 6 +++--- MD5 | 6 +++--- inst/doc/RandomForestsGLS_user_guide.pdf |binary src/RFGLS.cpp | 8 ++++---- 4 files changed, 10 insertions(+), 10 deletions(-)
More information about RandomForestsGLS at CRAN
Permanent link
Title: Graphic Devices Based on AGG
Description: Anti-Grain Geometry (AGG) is a high-quality and high-performance
2D drawing library. The 'ragg' package provides a set of graphic devices
based on AGG to use as alternative to the raster devices provided through
the 'grDevices' package.
Author: Thomas Lin Pedersen [cre, aut]
(<https://orcid.org/0000-0002-5147-4711>),
Maxim Shemanarev [aut, cph] (Author of AGG),
Tony Juricic [ctb, cph] (Contributor to AGG),
Milan Marusinec [ctb, cph] (Contributor to AGG),
Spencer Garrett [ctb] (Contributor to AGG),
RStudio [cph]
Maintainer: Thomas Lin Pedersen <thomas.pedersen@rstudio.com>
Diff between ragg versions 0.4.0 dated 2020-10-05 and 0.4.1 dated 2021-01-11
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 5 +++++ src/text_renderer.h | 6 +++--- tests/testthat/test-text.R | 1 + 5 files changed, 16 insertions(+), 10 deletions(-)
Title: Efficient Sequential and Batch Estimation of Univariate and
Bivariate Probability Density Functions and Cumulative
Distribution Functions along with Quantiles (Univariate) and
Spearman's Correlation (Bivariate)
Description: Facilitates estimation of full univariate and bivariate
probability density functions and cumulative distribution functions along with
full quantile functions (univariate) and Spearman's rank correlation
(bivariate) using Hermite series based estimators. These estimators are
particularly useful in the sequential setting (both stationary and
non-stationary) and one-pass batch estimation setting for large data sets.
Based on: Stephanou, Michael, Varughese, Melvin and Macdonald, Iain. "Sequential quantiles via Hermite series density estimation." Electronic Journal of Statistics 11.1 (2017): 570-607 <doi:10.1214/17-EJS1245>,
Stephanou, Michael and Varughese, Melvin. "On the properties of Hermite series based distribution function estimators." Metrika (2020) <doi:10.1007/s00184-020-00785-z> and Stephanou, Michael and Varughese, Melvin. "Sequential Estimation of Nonparametric Correlation using Hermite Series Estimators." arXiv Preprint (2020) <arXiv:2012.06287>.
Author: Michael Stephanou [aut, cre],
Melvin Varughese [ctb]
Maintainer: Michael Stephanou <michael.stephanou@gmail.com>
Diff between hermiter versions 2.0.0 dated 2020-12-14 and 2.0.2 dated 2021-01-11
DESCRIPTION | 7 MD5 | 49 ++--- NAMESPACE | 4 NEWS.md | 6 R/RcppExports.R | 21 ++ R/hermite_estimator_bivar.R | 45 ++-- R/hermite_estimator_univar.R | 237 ++++++++++++++------------ R/sysdata.rda |binary R/utils.R | 183 ++++++++++++++++++-- README.md | 25 +- build/partial.rdb |binary inst/doc/hermiter.R | 2 inst/doc/hermiter.Rmd | 2 inst/doc/hermiter.html | 10 - man/hermite_function_N.Rd | 5 man/hermite_function_sum.Rd |only man/hermite_function_sum_N.Rd |only man/hermite_int_full.Rd |only man/hermite_int_full_domain.Rd | 2 man/hermite_int_lower.Rd | 13 + man/hermite_int_upper.Rd | 13 + man/hermite_normalization_N.Rd |only man/hermite_polynomial_N.Rd |only src/RcppExports.cpp | 14 + src/hermite_utils.cpp | 151 ++++++++++++++-- tests/testthat/test_hermite_estimator.R | 72 +++++++ tests/testthat/test_hermite_estimator_bivar.R | 5 vignettes/hermiter.Rmd | 2 28 files changed, 646 insertions(+), 222 deletions(-)
Title: Conditional Graphical LASSO for Gaussian Graphical Models with
Censored and Missing Values
Description: Conditional graphical lasso estimator is an extension of the graphical lasso proposed to estimate the conditional dependence structure of a set of p response variables given q predictors. This package provides suitable extensions developed to study datasets with censored and/or missing values. Standard conditional graphical lasso is available as a special case. Furthermore, the package provides an integrated set of core routines for visualization, analysis, and simulation of datasets with censored and/or missing values drawn from a Gaussian graphical model. Details about the implemented models can be found in Augugliaro et al. (2020b) <\doi{10.1007/s11222-020-09945-7}>, Augugliaro et al. (2020a) <\doi{10.1093/biostatistics/kxy043}>, Yin et al. (2001) <\doi{10.1214/11-AOAS494}> and Stadler et al. (2012) <\doi{10.1007/s11222-010-9219-7}>.
Author: Luigi Augugliaro [aut, cre] (<https://orcid.org/0000-0002-4603-7541>),
Gianluca Sottile [aut] (<https://orcid.org/0000-0001-9347-7251>),
Ernst C. Wit [aut] (<https://orcid.org/0000-0002-3671-9610>),
Veronica Vinciotti [aut] (<https://orcid.org/0000-0002-2625-7977>)
Maintainer: Luigi Augugliaro <luigi.augugliaro@unipa.it>
Diff between cglasso versions 2.0.0 dated 2021-01-05 and 2.0.1 dated 2021-01-11
ChangeLog | 10 +++++ DESCRIPTION | 12 +++--- MD5 | 84 ++++++++++++++++++++++----------------------- R/GoF.R | 1 R/GoF_S3methods.R | 1 build/partial.rdb |binary man/ColMeans.Rd | 1 man/QFun.Rd | 1 man/aic.Rd | 2 + man/bic.Rd | 2 + man/cggm.Rd | 1 man/cglasso-package.Rd | 4 +- man/cglasso.Rd | 2 + man/coef.cglasso.Rd | 1 man/datacggm.Rd | 1 man/dim.datacggm.Rd | 1 man/dimnames.datacggm.Rd | 1 man/event.Rd | 1 man/fitted.cglasso.Rd | 1 man/getGraph.Rd | 1 man/getMatrix.Rd | 1 man/hist.datacggm.Rd | 1 man/impute.Rd | 1 man/is.cglasso2igraph.Rd | 1 man/is.datacggm.Rd | 1 man/lower.Rd | 1 man/nobs.datacggm.Rd | 1 man/plot.GoF.Rd | 1 man/plot.cggm.Rd | 1 man/plot.cglasso.Rd | 2 + man/plot.cglasso2igraph.Rd | 1 man/predict.cglasso.Rd | 1 man/qqcnorm.Rd | 1 man/residuals.cglasso.Rd | 1 man/rowNames.Rd | 1 man/select.cglasso.Rd | 1 man/summary.cglasso.Rd | 2 + man/to_graph.Rd | 1 src/Makevars | 1 src/cggm_v1.f90 | 2 - src/cglasso.h | 2 - src/cglasso_v1.f90 | 2 - src/glassosub.f90 | 2 - 43 files changed, 97 insertions(+), 60 deletions(-)
Title: Mobile Ready 'shiny' Apps with Standalone Capabilities
Description: Develop outstanding 'shiny' apps for 'iOS', 'Android', desktop as well as beautiful 'shiny' gadgets.
'shinyMobile' is built on top of the latest 'Framework7' template <https://framework7.io>.
Discover 14 new input widgets (sliders, vertical sliders, stepper,
grouped action buttons, toggles, picker, smart select, ...), 2 themes (light and dark),
12 new widgets (expandable cards, badges, chips, timelines, gauges, progress bars, ...)
combined with the power of server-side notifications such as alerts, modals, toasts,
action sheets, sheets (and more) as well as 3 layouts (single, tabs and split).
Author: David Granjon [aut, cre],
Victor Perrier [aut],
John Coene [ctb],
Isabelle Rudolf [aut],
Marvelapp [ctb, cph] (device.css wrappers),
Vladimir Kharlampidi [ctb, cph] (Framework7 HTML template)
Maintainer: David Granjon <dgranjon@ymail.com>
Diff between shinyMobile versions 0.7.0 dated 2020-06-17 and 0.8.0 dated 2021-01-11
shinyMobile-0.7.0/shinyMobile/R/deps.R |only shinyMobile-0.7.0/shinyMobile/R/f7Init.R |only shinyMobile-0.7.0/shinyMobile/inst/examples/chat_widget/www/icons/128x128.png |only shinyMobile-0.7.0/shinyMobile/inst/examples/chat_widget/www/manifest.json |only shinyMobile-0.7.0/shinyMobile/inst/framework7-5.5.0 |only shinyMobile-0.7.0/shinyMobile/man/f7Accordion.Rd |only shinyMobile-0.7.0/shinyMobile/man/f7AccordionItem.Rd |only shinyMobile-0.7.0/shinyMobile/man/f7ActionSheet.Rd |only shinyMobile-0.7.0/shinyMobile/man/f7AddMessages.Rd |only shinyMobile-0.7.0/shinyMobile/man/f7Appbar.Rd |only shinyMobile-0.7.0/shinyMobile/man/f7AutoComplete.Rd |only shinyMobile-0.7.0/shinyMobile/man/f7Back.Rd |only shinyMobile-0.7.0/shinyMobile/man/f7Block.Rd |only shinyMobile-0.7.0/shinyMobile/man/f7BlockHeader.Rd |only shinyMobile-0.7.0/shinyMobile/man/f7Button.Rd |only shinyMobile-0.7.0/shinyMobile/man/f7Card.Rd |only shinyMobile-0.7.0/shinyMobile/man/f7DatePicker.Rd |only shinyMobile-0.7.0/shinyMobile/man/f7ExpandableCard.Rd |only shinyMobile-0.7.0/shinyMobile/man/f7Fab.Rd |only shinyMobile-0.7.0/shinyMobile/man/f7FabMorphTarget.Rd |only shinyMobile-0.7.0/shinyMobile/man/f7Fabs.Rd |only shinyMobile-0.7.0/shinyMobile/man/f7Gauge.Rd |only shinyMobile-0.7.0/shinyMobile/man/f7HideNavbar.Rd |only shinyMobile-0.7.0/shinyMobile/man/f7Init.Rd |only shinyMobile-0.7.0/shinyMobile/man/f7InsertTab.Rd |only shinyMobile-0.7.0/shinyMobile/man/f7Message.Rd |only shinyMobile-0.7.0/shinyMobile/man/f7MessageBar.Rd |only shinyMobile-0.7.0/shinyMobile/man/f7Messages.Rd |only shinyMobile-0.7.0/shinyMobile/man/f7Navbar.Rd |only shinyMobile-0.7.0/shinyMobile/man/f7Next.Rd |only shinyMobile-0.7.0/shinyMobile/man/f7Panel.Rd |only shinyMobile-0.7.0/shinyMobile/man/f7PanelItem.Rd |only shinyMobile-0.7.0/shinyMobile/man/f7PanelMenu.Rd |only shinyMobile-0.7.0/shinyMobile/man/f7Picker.Rd |only shinyMobile-0.7.0/shinyMobile/man/f7Popover.Rd |only shinyMobile-0.7.0/shinyMobile/man/f7PopoverTarget.Rd |only shinyMobile-0.7.0/shinyMobile/man/f7Popup.Rd |only shinyMobile-0.7.0/shinyMobile/man/f7Progress.Rd |only shinyMobile-0.7.0/shinyMobile/man/f7ProgressInf.Rd |only shinyMobile-0.7.0/shinyMobile/man/f7RemoveTab.Rd |only shinyMobile-0.7.0/shinyMobile/man/f7Select.Rd |only shinyMobile-0.7.0/shinyMobile/man/f7Slider.Rd |only shinyMobile-0.7.0/shinyMobile/man/f7SmartSelect.Rd |only shinyMobile-0.7.0/shinyMobile/man/f7SocialCard.Rd |only shinyMobile-0.7.0/shinyMobile/man/f7Stepper.Rd |only shinyMobile-0.7.0/shinyMobile/man/f7Swipeout.Rd |only shinyMobile-0.7.0/shinyMobile/man/f7SwipeoutItem.Rd |only shinyMobile-0.7.0/shinyMobile/man/f7Swiper.Rd |only shinyMobile-0.7.0/shinyMobile/man/f7Text.Rd |only shinyMobile-0.7.0/shinyMobile/man/f7TextArea.Rd |only shinyMobile-0.7.0/shinyMobile/man/f7Timeline.Rd |only shinyMobile-0.7.0/shinyMobile/man/f7TimelineItem.Rd |only shinyMobile-0.7.0/shinyMobile/man/f7Toggle.Rd |only shinyMobile-0.7.0/shinyMobile/man/f7TogglePopup.Rd |only shinyMobile-0.7.0/shinyMobile/man/f7Tooltip.Rd |only shinyMobile-0.7.0/shinyMobile/man/f7ValidateInput.Rd |only shinyMobile-0.7.0/shinyMobile/man/f7VirtualList.Rd |only shinyMobile-0.7.0/shinyMobile/man/f7VirtualListItem.Rd |only shinyMobile-0.7.0/shinyMobile/man/f7checkBox.Rd |only shinyMobile-0.7.0/shinyMobile/man/f7checkBoxGroup.Rd |only shinyMobile-0.7.0/shinyMobile/man/updateF7Accordion.Rd |only shinyMobile-0.7.0/shinyMobile/man/updateF7AutoComplete.Rd |only shinyMobile-0.7.0/shinyMobile/man/updateF7Button.Rd |only shinyMobile-0.7.0/shinyMobile/man/updateF7Card.Rd |only shinyMobile-0.7.0/shinyMobile/man/updateF7Checkbox.Rd |only shinyMobile-0.7.0/shinyMobile/man/updateF7DatePicker.Rd |only shinyMobile-0.7.0/shinyMobile/man/updateF7Fab.Rd |only shinyMobile-0.7.0/shinyMobile/man/updateF7Fabs.Rd |only shinyMobile-0.7.0/shinyMobile/man/updateF7Gauge.Rd |only shinyMobile-0.7.0/shinyMobile/man/updateF7MessageBar.Rd |only shinyMobile-0.7.0/shinyMobile/man/updateF7Panel.Rd |only shinyMobile-0.7.0/shinyMobile/man/updateF7Picker.Rd |only shinyMobile-0.7.0/shinyMobile/man/updateF7Progress.Rd |only shinyMobile-0.7.0/shinyMobile/man/updateF7Select.Rd |only shinyMobile-0.7.0/shinyMobile/man/updateF7Slider.Rd |only shinyMobile-0.7.0/shinyMobile/man/updateF7SmartSelect.Rd |only shinyMobile-0.7.0/shinyMobile/man/updateF7Stepper.Rd |only shinyMobile-0.7.0/shinyMobile/man/updateF7Text.Rd |only shinyMobile-0.7.0/shinyMobile/man/updateF7Toggle.Rd |only shinyMobile-0.8.0/shinyMobile/DESCRIPTION | 8 shinyMobile-0.8.0/shinyMobile/MD5 | 484 ++-- shinyMobile-0.8.0/shinyMobile/NAMESPACE | 31 shinyMobile-0.8.0/shinyMobile/NEWS.md | 83 shinyMobile-0.8.0/shinyMobile/R/f7-inputs.R | 1040 +++++++++- shinyMobile-0.8.0/shinyMobile/R/f7-tables.R | 24 shinyMobile-0.8.0/shinyMobile/R/f7-tabs.R | 113 - shinyMobile-0.8.0/shinyMobile/R/f7-update-inputs.R | 942 --------- shinyMobile-0.8.0/shinyMobile/R/f7-validate-inputs.R | 32 shinyMobile-0.8.0/shinyMobile/R/f7Accordion.R | 49 shinyMobile-0.8.0/shinyMobile/R/f7ActionSheet.R | 140 + shinyMobile-0.8.0/shinyMobile/R/f7Appbar.R | 37 shinyMobile-0.8.0/shinyMobile/R/f7Badge.R | 12 shinyMobile-0.8.0/shinyMobile/R/f7Block.R | 26 shinyMobile-0.8.0/shinyMobile/R/f7Button.R | 128 + shinyMobile-0.8.0/shinyMobile/R/f7Card.R | 141 - shinyMobile-0.8.0/shinyMobile/R/f7Chips.R | 33 shinyMobile-0.8.0/shinyMobile/R/f7Dialog.R | 55 shinyMobile-0.8.0/shinyMobile/R/f7Fab.R | 147 + shinyMobile-0.8.0/shinyMobile/R/f7Gauge.R | 30 shinyMobile-0.8.0/shinyMobile/R/f7Grid.R | 18 shinyMobile-0.8.0/shinyMobile/R/f7Icon.R | 8 shinyMobile-0.8.0/shinyMobile/R/f7Link.R | 20 shinyMobile-0.8.0/shinyMobile/R/f7List.R | 116 - shinyMobile-0.8.0/shinyMobile/R/f7Login.R | 94 shinyMobile-0.8.0/shinyMobile/R/f7Menu.R |only shinyMobile-0.8.0/shinyMobile/R/f7Messages.R | 153 - shinyMobile-0.8.0/shinyMobile/R/f7Navbar.R | 118 - shinyMobile-0.8.0/shinyMobile/R/f7Notif.R | 35 shinyMobile-0.8.0/shinyMobile/R/f7Page.R | 223 +- shinyMobile-0.8.0/shinyMobile/R/f7Panel.R | 82 shinyMobile-0.8.0/shinyMobile/R/f7PhotoBrowser.R | 66 shinyMobile-0.8.0/shinyMobile/R/f7Popover.R | 142 + shinyMobile-0.8.0/shinyMobile/R/f7Popup.R | 41 shinyMobile-0.8.0/shinyMobile/R/f7Preloader.R | 58 shinyMobile-0.8.0/shinyMobile/R/f7Progress.R | 125 - shinyMobile-0.8.0/shinyMobile/R/f7Searchbar.R | 51 shinyMobile-0.8.0/shinyMobile/R/f7Shadow.R | 8 shinyMobile-0.8.0/shinyMobile/R/f7Sheet.R | 40 shinyMobile-0.8.0/shinyMobile/R/f7Skeleton.R | 16 shinyMobile-0.8.0/shinyMobile/R/f7Swipeout.R | 22 shinyMobile-0.8.0/shinyMobile/R/f7Swiper.R | 77 shinyMobile-0.8.0/shinyMobile/R/f7TapHold.R | 11 shinyMobile-0.8.0/shinyMobile/R/f7Timeline.R | 18 shinyMobile-0.8.0/shinyMobile/R/f7Toast.R | 29 shinyMobile-0.8.0/shinyMobile/R/f7Toolbar.R | 5 shinyMobile-0.8.0/shinyMobile/R/f7Tooltip.R | 129 + shinyMobile-0.8.0/shinyMobile/R/f7icons-dependencies.R |only shinyMobile-0.8.0/shinyMobile/R/framework7-dependencies.R |only shinyMobile-0.8.0/shinyMobile/R/manifest.R | 11 shinyMobile-0.8.0/shinyMobile/R/preview_mobile.R | 12 shinyMobile-0.8.0/shinyMobile/R/pwa-dependencies.R |only shinyMobile-0.8.0/shinyMobile/R/pwacompat-dependencies.R |only shinyMobile-0.8.0/shinyMobile/R/shinyMobile-dependencies.R |only shinyMobile-0.8.0/shinyMobile/R/typography.R | 36 shinyMobile-0.8.0/shinyMobile/R/update-app.R |only shinyMobile-0.8.0/shinyMobile/R/utils.R | 67 shinyMobile-0.8.0/shinyMobile/README.md | 26 shinyMobile-0.8.0/shinyMobile/inst/doc/Gadgets.Rmd | 3 shinyMobile-0.8.0/shinyMobile/inst/doc/Gadgets.html | 71 shinyMobile-0.8.0/shinyMobile/inst/doc/Single-Layout.R | 6 shinyMobile-0.8.0/shinyMobile/inst/doc/Single-Layout.Rmd | 8 shinyMobile-0.8.0/shinyMobile/inst/doc/Single-Layout.html | 151 + shinyMobile-0.8.0/shinyMobile/inst/doc/Split-Layout.R | 36 shinyMobile-0.8.0/shinyMobile/inst/doc/Split-Layout.Rmd | 46 shinyMobile-0.8.0/shinyMobile/inst/doc/Split-Layout.html | 373 ++- shinyMobile-0.8.0/shinyMobile/inst/doc/Tabs-Layout.R | 18 shinyMobile-0.8.0/shinyMobile/inst/doc/Tabs-Layout.Rmd | 34 shinyMobile-0.8.0/shinyMobile/inst/doc/Tabs-Layout.html | 405 ++- shinyMobile-0.8.0/shinyMobile/inst/doc/shinyMobile.Rmd | 151 - shinyMobile-0.8.0/shinyMobile/inst/doc/shinyMobile.html | 228 +- shinyMobile-0.8.0/shinyMobile/inst/doc/shinyMobile_tools.R | 62 shinyMobile-0.8.0/shinyMobile/inst/doc/shinyMobile_tools.Rmd | 45 shinyMobile-0.8.0/shinyMobile/inst/doc/shinyMobile_tools.html | 325 +-- shinyMobile-0.8.0/shinyMobile/inst/examples/chat_widget/app.R | 15 shinyMobile-0.8.0/shinyMobile/inst/examples/chat_widget/www/icons/icon-144.png |only shinyMobile-0.8.0/shinyMobile/inst/examples/chat_widget/www/manifest.webmanifest |only shinyMobile-0.8.0/shinyMobile/inst/examples/chat_widget/www/offline.html |only shinyMobile-0.8.0/shinyMobile/inst/examples/chat_widget/www/service-worker.js |only shinyMobile-0.8.0/shinyMobile/inst/examples/gallery/app.R | 113 - shinyMobile-0.8.0/shinyMobile/inst/examples/gallery/rsconnect/shinyapps.io/dgranjon/workerId-issue-app.dcf |only shinyMobile-0.8.0/shinyMobile/inst/examples/gallery/tabs/tabBtns.R | 20 shinyMobile-0.8.0/shinyMobile/inst/examples/gallery/tabs/tabCards.R | 18 shinyMobile-0.8.0/shinyMobile/inst/examples/gallery/tabs/tabLists.R | 2 shinyMobile-0.8.0/shinyMobile/inst/examples/gallery/tabs/tabOthers.R | 30 shinyMobile-0.8.0/shinyMobile/inst/examples/gallery/www |only shinyMobile-0.8.0/shinyMobile/inst/examples/pullToRefresh/app.R | 9 shinyMobile-0.8.0/shinyMobile/inst/examples/single_layout/app.R | 6 shinyMobile-0.8.0/shinyMobile/inst/examples/split_layout/app.R | 35 shinyMobile-0.8.0/shinyMobile/inst/examples/standalone_tabs/app.R | 29 shinyMobile-0.8.0/shinyMobile/inst/examples/tab_layout/app.R | 13 shinyMobile-0.8.0/shinyMobile/inst/examples/tab_layout/rsconnect |only shinyMobile-0.8.0/shinyMobile/inst/f7icons |only shinyMobile-0.8.0/shinyMobile/inst/framework7-5.7.14 |only shinyMobile-0.8.0/shinyMobile/inst/marvel-devices-css-1.0.0 |only shinyMobile-0.8.0/shinyMobile/inst/pwacompat-2.0.17 |only shinyMobile-0.8.0/shinyMobile/inst/shinyMobile-0.8.0.9000 |only shinyMobile-0.8.0/shinyMobile/inst/tests/socket-reconnect |only shinyMobile-0.8.0/shinyMobile/inst/tests/test-inputs.R | 5 shinyMobile-0.8.0/shinyMobile/man/accordion.Rd |only shinyMobile-0.8.0/shinyMobile/man/actionsheet.Rd |only shinyMobile-0.8.0/shinyMobile/man/add_dependencies.Rd |only shinyMobile-0.8.0/shinyMobile/man/add_f7icons_dependencies.Rd |only shinyMobile-0.8.0/shinyMobile/man/add_framework7_deps.Rd |only shinyMobile-0.8.0/shinyMobile/man/add_pwa_deps.Rd |only shinyMobile-0.8.0/shinyMobile/man/add_pwacompat_deps.Rd |only shinyMobile-0.8.0/shinyMobile/man/add_shinyMobile_deps.Rd |only shinyMobile-0.8.0/shinyMobile/man/appbar.Rd |only shinyMobile-0.8.0/shinyMobile/man/authentication.Rd | 28 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shinyMobile-0.8.0/shinyMobile/man/f7SingleLayout.Rd | 14 shinyMobile-0.8.0/shinyMobile/man/f7Skeleton.Rd | 16 shinyMobile-0.8.0/shinyMobile/man/f7Slide.Rd | 9 shinyMobile-0.8.0/shinyMobile/man/f7SplitLayout.Rd | 10 shinyMobile-0.8.0/shinyMobile/man/f7SubNavbar.Rd | 11 shinyMobile-0.8.0/shinyMobile/man/f7TabLayout.Rd | 18 shinyMobile-0.8.0/shinyMobile/man/f7Table.Rd | 4 shinyMobile-0.8.0/shinyMobile/man/f7TapHold.Rd | 9 shinyMobile-0.8.0/shinyMobile/man/f7Toast.Rd | 18 shinyMobile-0.8.0/shinyMobile/man/f7Toolbar.Rd | 5 shinyMobile-0.8.0/shinyMobile/man/fab.Rd |only shinyMobile-0.8.0/shinyMobile/man/fabs.Rd |only shinyMobile-0.8.0/shinyMobile/man/gauge.Rd |only shinyMobile-0.8.0/shinyMobile/man/inserttab.Rd |only shinyMobile-0.8.0/shinyMobile/man/menu.Rd |only shinyMobile-0.8.0/shinyMobile/man/messagebar.Rd |only shinyMobile-0.8.0/shinyMobile/man/messages.Rd |only shinyMobile-0.8.0/shinyMobile/man/navbar.Rd |only shinyMobile-0.8.0/shinyMobile/man/panel.Rd |only 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shinyMobile-0.8.0/shinyMobile/vignettes/shinyMobile_tools.Rmd | 45 281 files changed, 5003 insertions(+), 3628 deletions(-)
Title: Chinese Numerals Processing
Description: Chinese numerals processing in R, such as conversion between
Chinese numerals and Arabic numerals as well as detection and extraction of
Chinese numerals in character objects and string. This package supports
the casual scale naming system and the respective SI prefix systems used
in mainland China and Taiwan:
"China Statutory Measurement Units"
State Administration for Market Regulation (2019) <http://gkml.samr.gov.cn/nsjg/jls/201902/t20190225_291134.html>
"Names, Definitions and Symbols of the Legal Units of Measurement and the Decimal Multiples and Submultiples"
Ministry of Economic Affairs (2019) <https://gazette.nat.gov.tw/egFront/detail.do?metaid=108965>.
Author: Elgar Teo [aut, cre]
Maintainer: Elgar Teo <elgarteo@connect.hku.hk>
Diff between cnum versions 0.1.2 dated 2020-05-02 and 0.1.3 dated 2021-01-11
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ NEWS.md | 6 +++++- R/cnum-tools.R | 13 +++++++++++-- R/data-utils.R | 22 ++++++++++++++-------- README.md | 40 +++++++++++++++++++++++----------------- man/tools.Rd | 10 ++++++++++ 7 files changed, 73 insertions(+), 38 deletions(-)
Title: Easy Frequency Tables
Description: Generate 'SPSS'/'SAS' styled frequency tables. Frequency tables are
generated with variable and value label attributes where applicable with optional
html output to quickly examine datasets.
Author: Alistair Wilcox
Maintainer: Alistair Wilcox <frequency@alistairwilcox.com>
Diff between frequency versions 0.4.0 dated 2020-04-05 and 0.4.1 dated 2021-01-11
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ NEWS.md | 6 ++++++ R/big5.R | 2 +- README.md | 4 +++- man/big5.Rd | 2 +- tests/testthat/tests.R | 18 +++++++++++++----- 7 files changed, 34 insertions(+), 18 deletions(-)
Title: A Robust and Powerful Test of Abnormal Stock Returns in
Long-Horizon Event Studies
Description: Based on Dutta et al. (2018) <doi:10.1016/j.jempfin.2018.02.004>, this package provides their standardized test for abnormal returns in long-horizon event studies. The methods used improve the major weaknesses of size, power, and robustness of long-run statistical tests described in Kothari/Warner (2007) <doi:10.1016/B978-0-444-53265-7.50015-9>. Abnormal returns are weighted by their statistical precision (i.e., standard deviation), resulting in abnormal standardized returns. This procedure efficiently captures the heteroskedasticity problem. Clustering techniques following Cameron et al. (2011) <doi:10.1198/jbes.2010.07136> are adopted for computing cross-sectional correlation robust standard errors. The statistical tests in this package therefore accounts for potential biases arising from returns' cross-sectional correlation, autocorrelation, and volatility clustering without power loss.
Author: Siegfried Köstlmeier [aut, cre]
(<https://orcid.org/0000-0002-7221-6981>),
Seppo Pynnonen [aut]
Maintainer: Siegfried Köstlmeier <siegfried.koestlmeier@gmail.com>
Diff between crseEventStudy versions 1.2 dated 2019-08-20 and 1.2.1 dated 2021-01-11
DESCRIPTION | 10 +++++----- MD5 | 4 ++-- build/partial.rdb |binary 3 files changed, 7 insertions(+), 7 deletions(-)
More information about crseEventStudy at CRAN
Permanent link
Title: Multistage Sampling Allocation and PSU Selection
Description: Multivariate optimal allocation for different domains in one and two stages stratified sample design.R2BEAT extends the Neyman (1934) – Tschuprow (1923) allocation method to the case of several variables, adopting a generalization of the Bethel’s proposal (1989). R2BEAT develops this methodology but, moreover, it allows to determine the sample allocation in the multivariate and multi-domains case of estimates for two-stage stratified samples. It also allows to perform Primary Stage Units selection. This package requires the availability of ReGenesees, that can be installed from <https://github.com/DiegoZardetto/ReGenesees>.
Author: Andrea Fasulo,Giulio Barcaroli,Raffaella Cianchetta,Stefano Falorsi,Alessio Guandalini,Daniela Pagliuca,Marco Dionisio Terribili
Maintainer: Andrea Fasulo <fasulo@istat.it>
Diff between R2BEAT versions 1.0.1 dated 2020-01-13 and 1.0.2 dated 2021-01-11
R2BEAT-1.0.1/R2BEAT/man/bethcv.Rd |only R2BEAT-1.0.2/R2BEAT/DESCRIPTION | 22 ++++++++------- R2BEAT-1.0.2/R2BEAT/MD5 | 36 +++++++++++++++---------- R2BEAT-1.0.2/R2BEAT/NAMESPACE | 5 ++- R2BEAT-1.0.2/R2BEAT/NEWS.md |only R2BEAT-1.0.2/R2BEAT/R/StratSel.R |only R2BEAT-1.0.2/R2BEAT/R/beatcv.R | 26 +++++++++++++++++- R2BEAT-1.0.2/R2BEAT/R/beth2.R | 21 +++++++------- R2BEAT-1.0.2/R2BEAT/R/check_input.R |only R2BEAT-1.0.2/R2BEAT/R/input_to_beat.2st_1.R |only R2BEAT-1.0.2/R2BEAT/R/input_to_beat.2st_2.R |only R2BEAT-1.0.2/R2BEAT/inst |only R2BEAT-1.0.2/R2BEAT/man/PSU_strat.Rd | 1 R2BEAT-1.0.2/R2BEAT/man/StratSel.Rd |only R2BEAT-1.0.2/R2BEAT/man/allocation.Rd | 2 - R2BEAT-1.0.2/R2BEAT/man/beatcv.Rd |only R2BEAT-1.0.2/R2BEAT/man/check_input.Rd |only R2BEAT-1.0.2/R2BEAT/man/deft_start.Rd | 1 R2BEAT-1.0.2/R2BEAT/man/design.Rd | 1 R2BEAT-1.0.2/R2BEAT/man/effst.Rd | 1 R2BEAT-1.0.2/R2BEAT/man/errors.Rd | 1 R2BEAT-1.0.2/R2BEAT/man/input_to_beat.2st_1.Rd |only R2BEAT-1.0.2/R2BEAT/man/input_to_beat.2st_2.Rd |only R2BEAT-1.0.2/R2BEAT/man/rho.Rd | 1 R2BEAT-1.0.2/R2BEAT/man/strata.Rd | 1 25 files changed, 76 insertions(+), 43 deletions(-)
Title: Permanent Random Number Sampling
Description: Survey sampling using permanent random numbers (PRN's). A solution to the
problem of unknown overlap between survey samples, which leads to a low
precision in estimates when the survey is repeated or combined with other
surveys. The PRN solution is to supply the U(0, 1) random numbers to the
sampling procedure, instead of having the sampling procedure generate them.
In Lindblom (2014) <doi:10.2478/jos-2014-0047>, and therein cited articles,
it is shown how this is carried out and how it improves the estimates. This
package supports two common fixed-size sampling procedures (simple random
sampling and probability-proportional-to-size sampling) and includes a
function for transforming the PRN's in order to control the sample overlap.
Author: Kira Coder Gylling
Maintainer: Kira Coder Gylling <kira.gylling@gmail.com>
Diff between prnsamplr versions 0.1.1 dated 2020-02-09 and 0.2.0 dated 2021-01-11
DESCRIPTION | 10 ++++---- LICENSE | 4 +-- MD5 | 13 +++++----- NEWS.md |only R/pps.R | 61 ++++++++++++++++++++++++------------------------- R/srs.R | 11 ++++---- README.md | 49 ++++++++++++++++++++------------------- data/ExampleData.RData |binary 8 files changed, 76 insertions(+), 72 deletions(-)
Title: Interface to 'Neptune' Experiment Tracking and Management Tool
Description: Interface to 'Neptune', experiment tracking tool that helps you organize
your machine learning experiments. You can log your hyperparameter, metrics, model binaries and
performance charts, organize them with tags and names and share everything easily in the app.
For more information see <https://neptune.ai/>.
Author: Mateusz Dominiak [aut],
Jakub Czakon [aut, cre]
Maintainer: Jakub Czakon <jakub.czakon@neptune.ai>
Diff between neptune versions 0.1.0 dated 2020-03-25 and 0.1.2 dated 2021-01-11
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ R/neptune.R | 6 ++++-- man/create_experiment.Rd | 6 ++++-- man/get_neptune.Rd | 3 --- man/log_image.Rd | 2 -- man/stop_experiment.Rd | 1 - 7 files changed, 17 insertions(+), 19 deletions(-)
Title: Gaussian Process Regression for Functional Data Analysis
Description: Functionalities for modelling functional data with
multidimensional inputs, multivariate functional data, and non-separable
and/or non-stationary covariance structure of function-valued processes.
In addition, there are functionalities for functional regression models where
the mean function depends on scalar and/or functional covariates and
the covariance structure depends on functional covariates.
The development version of the package can be found on
<https://github.com/gpfda/GPFDA-dev>.
Author: Jian Qing Shi, Yafeng Cheng, Evandro Konzen
Maintainer: Evandro Konzen <gpfda.r@gmail.com>
Diff between GPFDA versions 2.2 dated 2014-09-29 and 3.0.0 dated 2021-01-11
GPFDA-2.2/GPFDA/R/gp.functions5.R |only GPFDA-2.2/GPFDA/R/gpfr.functions5.R |only GPFDA-2.2/GPFDA/demo |only GPFDA-2.2/GPFDA/man/GPFDA-package.Rd |only GPFDA-2.2/GPFDA/man/betaPar.Rd |only GPFDA-2.2/GPFDA/man/cov.linear.Rd |only GPFDA-2.2/GPFDA/man/cov.pow.ex.Rd |only GPFDA-2.2/GPFDA/man/cov.rat.qu.Rd |only GPFDA-2.2/GPFDA/man/gpfrpred.Rd |only GPFDA-2.2/GPFDA/man/gppredict.Rd |only GPFDA-2.2/GPFDA/man/xixj.Rd |only GPFDA-2.2/GPFDA/man/xixj_sta.Rd |only GPFDA-3.0.0/GPFDA/DESCRIPTION | 37 ++-- GPFDA-3.0.0/GPFDA/MD5 | 96 +++++++--- GPFDA-3.0.0/GPFDA/NAMESPACE | 61 +++++- GPFDA-3.0.0/GPFDA/R/GPFDA.R |only GPFDA-3.0.0/GPFDA/R/RcppExports.R |only GPFDA-3.0.0/GPFDA/R/co2.R |only GPFDA-3.0.0/GPFDA/R/dataExampleGPFR.R |only GPFDA-3.0.0/GPFDA/R/gp.functions6.R |only GPFDA-3.0.0/GPFDA/R/gpfr.functions6.R |only GPFDA-3.0.0/GPFDA/R/mgp.functions.R |only GPFDA-3.0.0/GPFDA/R/nsgp.functions.R |only GPFDA-3.0.0/GPFDA/build |only GPFDA-3.0.0/GPFDA/data/dataExampleGPFR.rda |only GPFDA-3.0.0/GPFDA/inst |only GPFDA-3.0.0/GPFDA/man/D2.Rd | 51 ++--- GPFDA-3.0.0/GPFDA/man/GPFDA.Rd |only GPFDA-3.0.0/GPFDA/man/calcScaleDistMats.Rd |only GPFDA-3.0.0/GPFDA/man/co2.Rd | 32 +-- GPFDA-3.0.0/GPFDA/man/covMat.Rd |only GPFDA-3.0.0/GPFDA/man/dataExampleGPFR.Rd |only GPFDA-3.0.0/GPFDA/man/distanceMatrix.Rd |only GPFDA-3.0.0/GPFDA/man/gpfr.Rd | 265 ++++++++++++++--------------- GPFDA-3.0.0/GPFDA/man/gpfrPredict.Rd |only GPFDA-3.0.0/GPFDA/man/gpr.Rd | 190 +++++++++++--------- GPFDA-3.0.0/GPFDA/man/gprPredict.Rd |only GPFDA-3.0.0/GPFDA/man/mat2fd.Rd | 94 +++++----- GPFDA-3.0.0/GPFDA/man/mgpCovMat.Rd |only GPFDA-3.0.0/GPFDA/man/mgpr.Rd |only GPFDA-3.0.0/GPFDA/man/mgprPredict.Rd |only GPFDA-3.0.0/GPFDA/man/nsgpCovMat.Rd |only GPFDA-3.0.0/GPFDA/man/nsgpCovMatAsym.Rd |only GPFDA-3.0.0/GPFDA/man/nsgpr.Rd |only GPFDA-3.0.0/GPFDA/man/nsgprPredict.Rd |only GPFDA-3.0.0/GPFDA/man/plot.gpfr.Rd | 60 ++++-- GPFDA-3.0.0/GPFDA/man/plot.gpr.Rd | 75 +++++--- GPFDA-3.0.0/GPFDA/man/plot.mgpr.Rd |only GPFDA-3.0.0/GPFDA/man/plotImage.Rd |only GPFDA-3.0.0/GPFDA/man/plotmgpCovFun.Rd |only GPFDA-3.0.0/GPFDA/man/unscaledCorr.Rd |only GPFDA-3.0.0/GPFDA/src |only GPFDA-3.0.0/GPFDA/vignettes |only 53 files changed, 562 insertions(+), 399 deletions(-)
Title: Tools for Computation on Batch Systems
Description: As a successor of the packages 'BatchJobs' and 'BatchExperiments',
this package provides a parallel implementation of the Map function for high
performance computing systems managed by schedulers 'IBM Spectrum LSF'
(<https://www.ibm.com/products/hpc-workload-management>),
'OpenLava' (<https://www.openlava.org/>), 'Univa Grid Engine'/'Oracle Grid
Engine' (<https://www.univa.com/>), 'Slurm' (<https://slurm.schedmd.com/>),
'TORQUE/PBS'
(<https://adaptivecomputing.com/cherry-services/torque-resource-manager/>),
or 'Docker Swarm' (<https://docs.docker.com/engine/swarm/>).
A multicore and socket mode allow the parallelization on a local machines,
and multiple machines can be hooked up via SSH to create a makeshift
cluster. Moreover, the package provides an abstraction mechanism to define
large-scale computer experiments in a well-organized and reproducible way.
Author: Michel Lang [cre, aut] (<https://orcid.org/0000-0001-9754-0393>),
Bernd Bischl [aut],
Dirk Surmann [ctb] (<https://orcid.org/0000-0003-0873-137X>)
Maintainer: Michel Lang <michellang@gmail.com>
Diff between batchtools versions 0.9.14 dated 2020-10-21 and 0.9.15 dated 2021-01-11
DESCRIPTION | 10 +- MD5 | 118 ++++++++++++------------ NEWS.md | 4 R/clusterFunctionsLSF.R | 2 README.md | 2 inst/CITATION | 1 inst/doc/batchtools.Rmd | 2 inst/doc/batchtools.html | 4 tests/testthat/test_Algorithm.R | 2 tests/testthat/test_ClusterFunctions.R | 2 tests/testthat/test_ClusterFunctionsMulticore.R | 2 tests/testthat/test_ClusterFunctionsSSH.R | 4 tests/testthat/test_ClusterFunctionsSocket.R | 4 tests/testthat/test_ExperimentRegistry.R | 2 tests/testthat/test_Job.R | 2 tests/testthat/test_JobCollection.R | 2 tests/testthat/test_JobNames.R | 2 tests/testthat/test_Problem.R | 2 tests/testthat/test_Registry.R | 2 tests/testthat/test_addExperiments.R | 2 tests/testthat/test_batchMap.R | 5 - tests/testthat/test_batchReduce.R | 2 tests/testthat/test_btlapply.R | 2 tests/testthat/test_chunk.R | 4 tests/testthat/test_convertIds.R | 2 tests/testthat/test_count.R | 2 tests/testthat/test_doJobCollection.R | 2 tests/testthat/test_estimateRuntimes.R | 2 tests/testthat/test_export.R | 2 tests/testthat/test_findConfFile.R | 2 tests/testthat/test_findJobs.R | 2 tests/testthat/test_foreach.R | 2 tests/testthat/test_future.R | 2 tests/testthat/test_getErrorMessages.R | 2 tests/testthat/test_getJobTable.R | 2 tests/testthat/test_getStatus.R | 2 tests/testthat/test_grepLogs.R | 2 tests/testthat/test_hooks.R | 2 tests/testthat/test_joins.R | 2 tests/testthat/test_killJobs.R | 2 tests/testthat/test_manual.R | 2 tests/testthat/test_memory.R | 4 tests/testthat/test_mergeRegistries.R | 2 tests/testthat/test_parallelMap.R | 8 - tests/testthat/test_reduceResults.R | 3 tests/testthat/test_removeExperiments.R | 2 tests/testthat/test_removeRegistry.R | 2 tests/testthat/test_resetJobs.R | 2 tests/testthat/test_runOSCommand.R | 2 tests/testthat/test_seed.R | 2 tests/testthat/test_showLog.R | 2 tests/testthat/test_sleep.R | 2 tests/testthat/test_submitJobs.R | 2 tests/testthat/test_summarizeExperiments.R | 2 tests/testthat/test_sweepRegistry.R | 3 tests/testthat/test_tags.R | 2 tests/testthat/test_testJob.R | 2 tests/testthat/test_unwrap.R | 2 tests/testthat/test_waitForJobs.R | 2 vignettes/batchtools.Rmd | 2 60 files changed, 84 insertions(+), 182 deletions(-)
Title: Vector Logistic Smooth Transition Models / Realized Covariances
Construction
Description: Allows the user to estimate a vector logistic smooth transition autoregressive model via maximum log-likelihood or nonlinear least squares. It further permits to test for linearity in the multivariate framework against a vector logistic smooth transition autoregressive model with a single transition variable. The estimation method is discussed in Terasvirta and Yang (2014, <doi:10.1108/S0731-9053(2013)0000031008>). Also, realized covariances can be constructed from stock market prices or returns, as explained in Andersen et al. (2001, <doi:10.1016/S0304-405X(01)00055-1>).
Author: Andrea Bucci [aut, cre, cph],
Giulio Palomba [aut],
Eduardo Rossi [aut],
Andrea Faragalli [ctb]
Maintainer: Andrea Bucci <andrea.bucci@unich.it>
Diff between starvars versions 1.1.1 dated 2020-09-17 and 1.1.2 dated 2021-01-11
DESCRIPTION | 12 - MD5 | 20 - NAMESPACE | 2 R/VLSTAR.R | 598 ++++++++++++++++++++++++++++------------------------- R/VLSTARjoint.R | 6 R/coef.VLSTAR.R | 6 R/plot.VLSTAR.R | 18 + R/predict.VLSTAR.R | 6 R/summary.VLSTAR.R | 20 + README.md | 2 man/VLSTAR.Rd | 13 - 11 files changed, 391 insertions(+), 312 deletions(-)
Title: Manipulations of Triangular Meshes Based on the 'VCGLIB' API
Description: Operations on triangular meshes based on 'VCGLIB'. This package
integrates nicely with the R-package 'rgl' to render the meshes processed by
'Rvcg'. The Visualization and Computer Graphics Library (VCG for short) is
an open source portable C++ templated library for manipulation, processing
and displaying with OpenGL of triangle and tetrahedral meshes. The library,
composed by more than 100k lines of code, is released under the GPL license,
and it is the base of most of the software tools of the Visual Computing Lab of
the Italian National Research Council Institute ISTI <http://vcg.isti.cnr.it>,
like 'metro' and 'MeshLab'. The 'VCGLIB' source is pulled from trunk
<https://github.com/cnr-isti-vclab/vcglib> and patched to work with options
determined by the configure script as well as to work with the header files
included by 'RcppEigen'.
Author: Stefan Schlager [aut, cre, cph],
Girinon Francois [ctb]
Maintainer: Stefan Schlager <zarquon42@gmail.com>
Diff between Rvcg versions 0.19.1 dated 2020-02-07 and 0.19.2 dated 2021-01-11
DESCRIPTION | 13 +++--- MD5 | 68 ++++++++++++++++----------------- R/Rvcg-package.R | 4 - R/normorient.r | 3 + R/vcgBallPivoting.r | 3 + R/vcgClean.r | 2 R/vcgMetro.r | 4 + R/vcgPlyWrite.r | 2 R/vcgQEdecim.r | 4 - inst/NEWS.Rd | 11 +++++ man/Rvcg-package.Rd | 4 - man/checkFaceOrientation.Rd | 3 + man/dummyhead.Rd | 6 +- man/humface.Rd | 6 +- man/vcgBallPivoting.Rd | 12 ++++- man/vcgClost.Rd | 14 +++++- man/vcgClostKD.Rd | 20 +++++++-- man/vcgClostOnKDtreeFromBarycenters.Rd | 15 +++++-- man/vcgCreateKDtreeFromBarycenters.Rd | 3 - man/vcgImport.Rd | 9 +++- man/vcgIsolated.Rd | 10 +++- man/vcgIsosurface.Rd | 14 +++++- man/vcgKDtree.Rd | 3 - man/vcgKmeans.Rd | 3 - man/vcgMetro.Rd | 25 +++++++++--- man/vcgPlyWrite.Rd | 14 ++++-- man/vcgQEdecim.Rd | 23 ++++++++--- man/vcgRaySearch.Rd | 3 - man/vcgSample.Rd | 13 ++++-- man/vcgSmooth.Rd | 12 ++++- man/vcgSubdivide.Rd | 11 +++-- man/vcgUniformRemesh.Rd | 13 ++++-- man/vcgUpdateNormals.Rd | 3 - man/vcgWrlWrite.Rd | 3 - src/Rclean.cpp | 13 ++++++ 35 files changed, 259 insertions(+), 110 deletions(-)
Title: Quadrangle Mesh
Description: Create surface forms from matrix or 'raster' data for flexible plotting and
conversion to other mesh types. The functions 'quadmesh' or 'triangmesh'
produce a continuous surface as a 'mesh3d' object as used by the 'rgl'
package. This is used for plotting raster data in 3D (optionally with
texture), and allows the application of a map projection without data loss and
many processing applications that are restricted by inflexible regular grid rasters.
There are discrete forms of these continuous surfaces available with
'dquadmesh' and 'dtriangmesh' functions.
Author: Michael D. Sumner [aut, cre]
Maintainer: Michael D. Sumner <mdsumner@gmail.com>
Diff between quadmesh versions 0.4.5 dated 2020-04-15 and 0.5.0 dated 2021-01-11
quadmesh-0.4.5/quadmesh/tests/testthat/Rplots.pdf |only quadmesh-0.5.0/quadmesh/DESCRIPTION | 13 quadmesh-0.5.0/quadmesh/MD5 | 60 quadmesh-0.5.0/quadmesh/NAMESPACE | 2 quadmesh-0.5.0/quadmesh/NEWS.md | 11 quadmesh-0.5.0/quadmesh/R/exy_values.R | 41 quadmesh-0.5.0/quadmesh/R/mesh-plot.R | 654 +- quadmesh-0.5.0/quadmesh/R/mesh_plot_mesh3d.R | 52 quadmesh-0.5.0/quadmesh/R/qsc.R | 5 quadmesh-0.5.0/quadmesh/R/quadmesh-package.R | 39 quadmesh-0.5.0/quadmesh/R/quadmesh.R | 2 quadmesh-0.5.0/quadmesh/R/triangmesh.R | 2 quadmesh-0.5.0/quadmesh/R/utils-reproj.R |only quadmesh-0.5.0/quadmesh/R/utils.R | 13 quadmesh-0.5.0/quadmesh/build/vignette.rds |binary quadmesh-0.5.0/quadmesh/data/cmip6.rda |only quadmesh-0.5.0/quadmesh/inst/doc/quadmesh.R | 38 quadmesh-0.5.0/quadmesh/inst/doc/quadmesh.Rmd | 40 quadmesh-0.5.0/quadmesh/inst/doc/quadmesh.html | 5983 --------------------- quadmesh-0.5.0/quadmesh/inst/doc/topography.R | 33 quadmesh-0.5.0/quadmesh/inst/doc/topography.Rmd | 175 quadmesh-0.5.0/quadmesh/inst/doc/topography.html | 5987 ---------------------- quadmesh-0.5.0/quadmesh/inst/examples |only quadmesh-0.5.0/quadmesh/man/cmip6.Rd |only quadmesh-0.5.0/quadmesh/man/etopo.Rd | 7 quadmesh-0.5.0/quadmesh/man/mesh_plot.Rd | 22 quadmesh-0.5.0/quadmesh/man/qsc.Rd | 7 quadmesh-0.5.0/quadmesh/man/quadmesh.Rd | 2 quadmesh-0.5.0/quadmesh/man/reproj.Rd |only quadmesh-0.5.0/quadmesh/man/triangmesh.Rd | 4 quadmesh-0.5.0/quadmesh/man/worldll.Rd | 7 quadmesh-0.5.0/quadmesh/man/xymap.Rd | 7 quadmesh-0.5.0/quadmesh/vignettes/quadmesh.Rmd | 40 quadmesh-0.5.0/quadmesh/vignettes/topography.Rmd | 175 34 files changed, 1005 insertions(+), 12416 deletions(-)
Title: Pluralize Phrases
Description: Converts English phrases to singular or plural form
based on the length of an associated vector. Contains helper
functions to create natural language lists from vectors and to include
the length of a vector in natural language.
Author: Alexander Rossell Hayes [aut, cre, cph]
(<https://orcid.org/0000-0001-9412-0457>)
Maintainer: Alexander Rossell Hayes <alexander@rossellhayes.com>
Diff between plu versions 0.1.1 dated 2020-09-03 and 0.2.0 dated 2021-01-11
DESCRIPTION | 17 ++-- MD5 | 48 ++++++++--- NAMESPACE | 7 + NEWS.md | 29 ++++++ R/get_fun.R |only R/isTRUE.R |only R/is_capital.R |only R/plu-package.R | 1 R/plu_more.R |only R/plu_ral.R | 79 +++++++++++------- R/plu_ralize.R | 12 +- R/plu_stick.R | 126 ++++++++++++++---------------- README.md | 15 +++ build |only man/capitalize.Rd |only man/figures/lifecycle-archived.svg |only man/figures/lifecycle-defunct.svg |only man/figures/lifecycle-deprecated.svg |only man/figures/lifecycle-experimental.svg |only man/figures/lifecycle-maturing.svg |only man/figures/lifecycle-questioning.svg |only man/figures/lifecycle-soft-deprecated.svg |only man/figures/lifecycle-stable.svg |only man/figures/lifecycle-superseded.svg |only man/get_fun.Rd |only man/plu-package.Rd | 3 man/plu_more.Rd |only man/plu_ralize.Rd | 5 - man/plu_stick.Rd | 94 ++++++++++------------ tests/testthat/test-get_fun.R |only tests/testthat/test-is_capital.R |only tests/testthat/test-plu_more.R |only tests/testthat/test-plu_ral.R | 51 ++++++++++-- tests/testthat/test-plu_ralize.R | 19 ++-- tests/testthat/test-plu_stick.R | 98 ++++++++++------------- 35 files changed, 355 insertions(+), 249 deletions(-)
Title: Offline 'Google' Fonts for 'Markdown' and 'Shiny'
Description: Download 'Google' fonts and generate 'CSS' to use in 'rmarkdown' documents and
'shiny' applications. Some popular fonts are included and ready to use.
Author: Victor Perrier [aut, cre],
Fanny Meyer [aut],
Mario Ranftl [ctb, cph] (google-webfonts-helper)
Maintainer: Victor Perrier <victor.perrier@dreamrs.fr>
Diff between gfonts versions 0.1.1 dated 2020-05-09 and 0.1.2 dated 2021-01-11
DESCRIPTION | 10 +-- MD5 | 26 ++++---- NEWS.md | 6 ++ R/api.R | 27 ++++++--- R/css.R | 13 +++- R/setup_font.R | 17 ++++- README.md | 10 +++ build/vignette.rds |binary inst/doc/gfonts.html | 148 ++++++++++++++++++++++++++++++--------------------- man/download_font.Rd | 4 + man/generate_css.Rd | 8 ++ man/get_all_fonts.Rd | 8 ++ man/get_font_info.Rd | 4 + man/setup_font.Rd | 13 ++++ 14 files changed, 195 insertions(+), 99 deletions(-)
Title: Simple Imputation
Description: Easy to use interfaces to a number of imputation methods
that fit in the not-a-pipe operator of the 'magrittr' package.
Author: Mark van der Loo [aut, cre]
Maintainer: Mark van der Loo <mark.vanderloo@gmail.com>
Diff between simputation versions 0.2.4 dated 2020-03-13 and 0.2.5 dated 2021-01-11
DESCRIPTION | 8 MD5 | 16 NEWS | 4 R/hotdeck.R | 6 R/linearmodels.R | 6 build/vignette.rds |binary inst/doc/intro.R | 38 +- inst/doc/intro.html | 896 ++++++++++++++++++++++++++++------------------------ man/impute_lm.Rd | 6 9 files changed, 538 insertions(+), 442 deletions(-)
Title: Tools: Moving Window Statistics, GIF, Base64, ROC AUC, etc
Description: Contains several basic utility functions including: moving
(rolling, running) window statistic functions, read/write for
GIF and ENVI binary files, fast calculation of AUC, LogitBoost
classifier, base64 encoder/decoder, round-off-error-free sum
and cumsum, etc.
Author: Jarek Tuszynski <jaroslaw.w.tuszynski@saic.com>
Maintainer: Michael Dietze <mdietze@gfz-potsdam.de>
Diff between caTools versions 1.18.0 dated 2020-01-17 and 1.18.1 dated 2021-01-11
CHANGES | 193 +++++++++---------- DESCRIPTION | 8 MD5 | 16 - NEWS | 4 man/base64.Rd | 2 man/colAUC.Rd | 2 man/runmean.Rd | 527 +++++++++++++++++++++++++--------------------------- man/sample.split.Rd | 178 ++++++++--------- src/runfunc.c | 6 9 files changed, 470 insertions(+), 466 deletions(-)
Title: A Toolkit for PDF Files
Description: Provides function to manipulate PDF files:
fill out PDF forms;
merge multiple PDF files into one;
remove selected pages from a file;
rename multiple files in a directory;
rotate entire pdf document;
rotate selected pages of a pdf file;
Select pages from a file;
splits single input PDF document into individual pages;
splits single input PDF document into parts from given points.
'staplr' requires Java 8 installed on your system.
Author: Priyanga Dilini Talagala [aut, cre],
Ogan Mancarci [aut],
Daniel Padfield [aut],
Granville Matheson [aut]
Maintainer: Priyanga Dilini Talagala <pritalagala@gmail.com>
Diff between staplr versions 3.1.0 dated 2020-08-28 and 3.1.1 dated 2021-01-11
DESCRIPTION | 6 ++-- MD5 | 40 +++++++++++++++---------------- R/remove_pages.R | 9 +++--- R/rename_files.R | 5 ++- R/rotate_pages.R | 5 ++- R/rotate_pdf.R | 5 ++- R/select_pages.R | 5 ++- R/split_from.R | 5 ++- R/split_pdf.R | 5 ++- R/staple_pdf.R | 5 ++- man/remove_pages.Rd | 9 +++--- man/rename_files.Rd | 5 ++- man/rotate_pages.Rd | 5 ++- man/rotate_pdf.Rd | 5 ++- man/select_pages.Rd | 5 ++- man/split_from.Rd | 5 ++- man/split_pdf.Rd | 5 ++- man/staple_pdf.Rd | 5 ++- tests/testthat.R | 6 ++-- tests/testthat/test_fill_pdf_internals.R | 5 +++ tests/testthat/test_general.R | 4 ++- 21 files changed, 86 insertions(+), 63 deletions(-)
Title: Management of Deterministic and Stochastic Projects
Description: Management problems of deterministic and stochastic projects. It obtains the duration of a project and the appropriate slack for each activity in a deterministic context. In addition it obtains a schedule of activities' time (Castro, Gómez & Tejada (2007) <doi:10.1016/j.orl.2007.01.003>). It also allows the management of resources. When the project is done, and the actual duration for each activity is known, then it can know how long the project is delayed and make a fair delivery of the delay between each activity (Bergantiños, Valencia-Toledo & Vidal-Puga (2018) <doi:10.1016/j.dam.2017.08.012>). In a stochastic context it can estimate the average duration of the project and plot the density of this duration, as well as, the density of the early and last times of the chosen activities. As in the deterministic case, it can make a distribution of the delay generated by observing the project already carried out.
Author: Juan Carlos Gonçalves Dosantos [aut, cre],
Ignacio García Jurado [aut],
Julián Costa Bouzas [aut]
Maintainer: Juan Carlos Gonçalves Dosantos <juan.carlos.goncalves@udc.es>
Diff between ProjectManagement versions 1.3.3 dated 2020-05-14 and 1.3.7 dated 2021-01-11
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- R/function_pert_estocastico_demora.R | 4 ++-- 3 files changed, 8 insertions(+), 8 deletions(-)
More information about ProjectManagement at CRAN
Permanent link
Title: Linking R with the Open-Source 'SAGA-GIS' Software
Description: Provides an R scripting interface to the open-source 'SAGA-GIS' (System for Automated Geoscientific Analyses Geographical Information System) software. 'Rsagacmd' dynamically generates R functions for every 'SAGA-GIS' geoprocessing tool based on the user's currently installed 'SAGA-GIS' version. These functions are contained within an S3 object and are accessed as a named list of libraries and tools. This structure facilitates an easier scripting experience by organizing the large number of 'SAGA-GIS' geoprocessing tools (>700) by their respective library. Interactive scripting can fully take advantage of code autocompletion tools (e.g. in 'Rstudio'), allowing for each tools syntax to be quickly recognized. Furthermore, the most common types of spatial data (via the 'raster', 'terra', 'sp', and 'sf' packages) along with non-spatial data are automatically passed from R to the 'SAGA-GIS' command line tool for geoprocessing operations, and the results are loaded as the appropriate R object. Outputs from individual 'SAGA-GIS' tools can also be chained using pipes from the 'magrittr' and 'dplyr' packages to combine complex geoprocessing operations together in a single statement. 'SAGA-GIS' is available under a GPLv2 / LGPLv2 licence from <https://sourceforge.net/projects/saga-gis/> including Windows x86/x84 binaries. SAGA-GIS is also included in Debian/Ubuntu default software repositories and is available for macOS using homebrew (<https://brew.sh/>) from the osgeo/osgeo4mac (<https://github.com/OSGeo/homebrew-osgeo4mac>) formula tap. Rsagacmd has currently been tested on 'SAGA-GIS' versions from 2.3.1 to 7.9.0 on Windows, Linux and macOS.
Author: Steven Pawley [aut, cre]
Maintainer: Steven Pawley <dr.stevenpawley@gmail.com>
Diff between Rsagacmd versions 0.0.9 dated 2020-06-12 and 0.1.0 dated 2021-01-11
Rsagacmd-0.0.9/Rsagacmd/tests/testthat/test_mrvbf_threshold.R |only Rsagacmd-0.1.0/Rsagacmd/DESCRIPTION | 18 Rsagacmd-0.1.0/Rsagacmd/MD5 | 71 - Rsagacmd-0.1.0/Rsagacmd/NAMESPACE | 10 Rsagacmd-0.1.0/Rsagacmd/NEWS.md | 22 Rsagacmd-0.1.0/Rsagacmd/R/Rsagacmd.R | 7 Rsagacmd-0.1.0/Rsagacmd/R/create_function.R | 30 Rsagacmd-0.1.0/Rsagacmd/R/create_tool.R | 188 -- Rsagacmd-0.1.0/Rsagacmd/R/formats.R |only Rsagacmd-0.1.0/Rsagacmd/R/parameters.R |only Rsagacmd-0.1.0/Rsagacmd/R/read_output.R | 138 +- Rsagacmd-0.1.0/Rsagacmd/R/run_cmd.R |only Rsagacmd-0.1.0/Rsagacmd/R/saga.R | 654 +++++----- Rsagacmd-0.1.0/Rsagacmd/R/saga_execute.R | 220 +-- Rsagacmd-0.1.0/Rsagacmd/R/saga_search.R | 1 Rsagacmd-0.1.0/Rsagacmd/R/saga_version.R | 7 Rsagacmd-0.1.0/Rsagacmd/R/save_object.R | 107 + Rsagacmd-0.1.0/Rsagacmd/R/utils.R | 109 - Rsagacmd-0.1.0/Rsagacmd/README.md | 6 Rsagacmd-0.1.0/Rsagacmd/man/Rsagacmd.Rd | 9 Rsagacmd-0.1.0/Rsagacmd/man/create_alias.Rd |only Rsagacmd-0.1.0/Rsagacmd/man/create_function.Rd |only Rsagacmd-0.1.0/Rsagacmd/man/create_tool.Rd |only Rsagacmd-0.1.0/Rsagacmd/man/drop_parameters.Rd |only Rsagacmd-0.1.0/Rsagacmd/man/mrvbf_threshold.Rd | 6 Rsagacmd-0.1.0/Rsagacmd/man/parameter.Rd |only Rsagacmd-0.1.0/Rsagacmd/man/parameters.Rd |only Rsagacmd-0.1.0/Rsagacmd/man/parse_options.Rd |only Rsagacmd-0.1.0/Rsagacmd/man/read_grid.Rd |only Rsagacmd-0.1.0/Rsagacmd/man/read_grid_list.Rd |only Rsagacmd-0.1.0/Rsagacmd/man/read_output.Rd |only Rsagacmd-0.1.0/Rsagacmd/man/read_shapes.Rd |only Rsagacmd-0.1.0/Rsagacmd/man/read_table.Rd |only Rsagacmd-0.1.0/Rsagacmd/man/run_cmd.Rd |only Rsagacmd-0.1.0/Rsagacmd/man/saga_env.Rd | 6 Rsagacmd-0.1.0/Rsagacmd/man/saga_execute.Rd | 13 Rsagacmd-0.1.0/Rsagacmd/man/saga_gis.Rd | 50 Rsagacmd-0.1.0/Rsagacmd/man/save_object.Rd | 3 Rsagacmd-0.1.0/Rsagacmd/man/show_raster_formats.Rd |only Rsagacmd-0.1.0/Rsagacmd/man/show_vector_formats.Rd |only Rsagacmd-0.1.0/Rsagacmd/man/tile_geoprocessor.Rd | 2 Rsagacmd-0.1.0/Rsagacmd/man/update_parameter_file.Rd |only Rsagacmd-0.1.0/Rsagacmd/man/update_parameters_file.Rd |only Rsagacmd-0.1.0/Rsagacmd/man/update_parameters_tempfiles.Rd |only Rsagacmd-0.1.0/Rsagacmd/tests/testthat/test_saga_environment.R | 28 Rsagacmd-0.1.0/Rsagacmd/tests/testthat/test_sagatools.R | 22 Rsagacmd-0.1.0/Rsagacmd/tests/testthat/test_tempfiles.R |only Rsagacmd-0.1.0/Rsagacmd/tests/testthat/test_tile_geoprocessor.R | 4 48 files changed, 958 insertions(+), 773 deletions(-)
Title: Ridge-Type Penalized Estimation of a Potpourri of Models
Description: The name of the package is derived from the French, 'pour' ridge, and provides functionality for ridge-type estimation of a potpourri of models. Currently, this estimation concerns that of various Gaussian graphical models from different study designs. Among others it considers the regular Gaussian graphical model and a mixture of such models. The porridge-package implements the estimation of the former either from i) data with replicated observations by penalized loglikelihood maximization using the regular ridge penalty on the parameters (van Wieringen, Chen, 2019) or ii) from non-replicated data by means of the generalized ridge estimator that allows for both the inclusion of quantitative and qualitative prior information on the precision matrix via element-wise penalization and shrinkage (van Wieringen, 2019, <doi:10.1080/10618600.2019.1604374>). Additionally, the porridge-package facilitates the ridge penalized estimation of a mixture of Gaussian graphical models (Aflakparast et al., 2018, <doi:10.1002/bimj.201700102>).
Author: Wessel N. van Wieringen [aut, cre],
Mehran Aflakparast [ctb] (part of the R-code of the mixture
functionality)
Maintainer: Wessel N. van Wieringen <w.vanwieringen@vumc.nl>
Diff between porridge versions 0.1.0 dated 2020-05-18 and 0.1.1 dated 2021-01-11
DESCRIPTION | 12 ++++++------ MD5 | 6 +++--- inst/NEWS.Rd | 8 ++++++++ man/porridge-package.Rd | 4 ++-- 4 files changed, 19 insertions(+), 11 deletions(-)
Title: Goodness-of-Fit Tests using Kernelized Stein Discrepancy
Description: An adaptation of Kernelized Stein Discrepancy, this package provides a goodness-of-fit test of whether a given i.i.d. sample is drawn from a given distribution. It works for any distribution once its score function (the derivative of log-density) can be provided. This method is based on "A Kernelized Stein Discrepancy for Goodness-of-fit Tests and Model Evaluation" by Liu, Lee, and Jordan, available at <arXiv:1602.03253>.
Author: Min Hyung Kang [aut, cre],
Qiang Liu [aut]
Maintainer: Min Hyung Kang <Minhyung.Daniel.Kang@gmail.com>
Diff between KSD versions 1.0.0 dated 2016-07-31 and 1.0.1 dated 2021-01-11
DESCRIPTION | 12 LICENSE | 2 MD5 | 51 +- NAMESPACE | 38 +- NEWS.md | 17 R/KSD.R | 322 ++++++++--------- R/demo_iris.R | 294 ++++++++-------- R/demo_simple_gmm.R | 384 ++++++++++----------- R/gmm.R | 744 ++++++++++++++++++++--------------------- R/helper.R | 216 +++++------ R/median_distance.R | 184 +++++----- README.md | 230 +++++++----- man/KSD.Rd | 137 +++---- man/demo_gmm.Rd | 23 - man/demo_gmm_multi.Rd | 23 - man/demo_iris.Rd | 49 +- man/demo_normal_performance.Rd | 25 - man/demo_simple_gamma.Rd | 56 +-- man/demo_simple_gaussian.Rd | 50 +- man/figures |only man/gmm.Rd | 75 ++-- man/likelihoodgmm.Rd | 55 +-- man/perturbgmm.Rd | 45 +- man/plotgmm.Rd | 59 +-- man/posteriorgmm.Rd | 55 +-- man/rgmm.Rd | 63 +-- man/scorefunctiongmm.Rd | 57 +-- 27 files changed, 1644 insertions(+), 1622 deletions(-)
Title: Storing, Manipulating and Analysis Spectroscopy and Associated
Data
Description: Stores and eases the manipulation of spectra and associated data,
with dedicated classes for spatial and soil-related data.
Author: Pierre Roudier [aut, cre],
Max Kuhn [ctb],
Kristian Hovde Liland [ctb],
Bjorn-Helge Mevik [ctb],
Hadley Wickham [ctb],
Raphael Viscarra Rossel [dtc]
Maintainer: Pierre Roudier <roudierp@landcareresearch.co.nz>
Diff between spectacles versions 0.5-2-2 dated 2020-02-20 and 0.5-3 dated 2021-01-11
DESCRIPTION | 13 ++++----- MD5 | 65 ++++++++++++++++++++++++++-------------------- NAMESPACE | 1 NEWS | 4 ++ R/Spectra-methods.R | 19 ++++++++++--- R/setters.R | 3 ++ R/splice.R | 13 +++++---- build |only inst/doc |only man/Spectra-class.Rd | 3 -- man/Spectra.Rd | 3 -- man/SpectraDataFrame.Rd | 10 +++++-- man/aggregate_spectra.Rd | 4 -- man/dimensions.Rd | 5 --- man/extraction-methods.Rd | 1 man/fill_spectra.Rd | 1 man/ids.Rd | 2 - man/kenstone.Rd | 1 man/melt_spectra.Rd | 1 man/plot-Spectra.Rd | 1 man/plot_offset.Rd | 1 man/plot_stack.Rd | 1 man/plot_summary.Rd | 1 man/rbind.Rd | 5 --- man/res.Rd | 1 man/snv.Rd | 1 man/spectra-methods.Rd | 1 man/splice.Rd | 1 man/summary.Rd | 6 ++++ man/wl.Rd | 2 - man/wl_units.Rd | 1 vignettes |only 32 files changed, 93 insertions(+), 78 deletions(-)
Title: Useful Tools for Structural Equation Modeling
Description: Provides tools for structural equation modeling, many of which extend the 'lavaan' package; for example, to pool results from multiple imputations, probe latent interactions, or test measurement invariance.
Author: Terrence D. Jorgensen [aut, cre]
(<https://orcid.org/0000-0001-5111-6773>),
Sunthud Pornprasertmanit [aut],
Alexander M. Schoemann [aut] (<https://orcid.org/0000-0002-8479-8798>),
Yves Rosseel [aut] (<https://orcid.org/0000-0002-4129-4477>),
Patrick Miller [ctb],
Corbin Quick [ctb],
Mauricio Garnier-Villarreal [ctb]
(<https://orcid.org/0000-0002-2951-6647>),
James Selig [ctb],
Aaron Boulton [ctb],
Kristopher Preacher [ctb],
Donna Coffman [ctb],
Mijke Rhemtulla [ctb] (<https://orcid.org/0000-0003-2572-2424>),
Alexander Robitzsch [ctb] (<https://orcid.org/0000-0002-8226-3132>),
Craig Enders [ctb],
Ruben Arslan [ctb] (<https://orcid.org/0000-0002-6670-5658>),
Bell Clinton [ctb],
Pavel Panko [ctb],
Edgar Merkle [ctb] (<https://orcid.org/0000-0001-7158-0653>),
Steven Chesnut [ctb],
Jarrett Byrnes [ctb],
Jason D. Rights [ctb],
Ylenio Longo [ctb],
Maxwell Mansolf [ctb] (<https://orcid.org/0000-0001-6861-8657>),
Mattan S. Ben-Shachar [ctb] (<https://orcid.org/0000-0002-4287-4801>),
Mikko Rönkkö [ctb] (<https://orcid.org/0000-0001-7988-7609>)
Maintainer: Terrence D. Jorgensen <TJorgensen314@gmail.com>
Diff between semTools versions 0.5-3 dated 2020-05-27 and 0.5-4 dated 2021-01-11
DESCRIPTION | 19 - MD5 | 183 +++++------ NEWS.md | 18 + R/EmpKaiser.R | 154 +++++---- R/NET.R | 35 +- R/PAVranking.R | 13 R/TSML.R | 10 R/auxiliary.R | 198 ++++++------ R/compareFit.R | 18 - R/dataDiagnosis.R | 370 +++++++++++------------ R/discriminantValidity.R | 19 - R/emmeans_lavaan.R | 39 +- R/fitIndices.R | 14 R/fmi.R | 204 ++++++------ R/htmt.R | 6 R/indProd.R | 8 R/kd.R | 140 ++++---- R/longInvariance.R | 4 R/measEq.R | 64 +++- R/measurementInvarianceCat.R | 4 R/miPowerFit.R | 326 ++++++++++---------- R/missingBootstrap.R | 8 R/monteCarloMed.R | 7 R/mvrnonnorm.R | 88 ++--- R/parcelAllocation.R | 10 R/permuteMeasEq.R | 20 - R/poolMAlloc.R | 10 R/powerAnalysisNested.R | 256 ++++++++-------- R/powerAnalysisRMSEA.R | 458 ++++++++++++++--------------- R/powerAnalysisSS.R | 4 R/probeInteraction.R | 55 ++- R/quark.R | 269 ++++++++--------- R/reliability.R | 118 ++++--- R/residualCovariate.R | 61 ++- R/runMI-LRT.R | 6 R/runMI-Wald.R | 4 R/runMI-methods.R | 69 ++-- R/runMI-modification.R | 15 R/runMI-score.R | 15 R/runMI.R | 6 build/partial.rdb |only build/vignette.rds |binary inst/doc/partialInvariance.pdf |binary man/PAVranking.Rd | 11 man/SSpower.Rd | 2 man/auxiliary.Rd | 2 man/bsBootMiss.Rd | 4 man/calculate.D2.Rd | 2 man/chisqSmallN.Rd | 4 man/discriminantValidity.Rd | 10 man/efa.ekc.Rd | 5 man/findRMSEApower.Rd | 2 man/findRMSEApowernested.Rd | 2 man/findRMSEAsamplesize.Rd | 2 man/findRMSEAsamplesizenested.Rd | 4 man/fmi.Rd | 4 man/htmt.Rd | 4 man/indProd.Rd | 6 man/kd.Rd | 2 man/lavTestLRT.mi.Rd | 4 man/lavTestScore.mi.Rd | 13 man/lavTestWald.mi.Rd | 2 man/lavaan.mi-class.Rd | 22 - man/longInvariance-deprecated.Rd | 2 man/mardiaKurtosis.Rd | 4 man/mardiaSkew.Rd | 4 man/maximalRelia.Rd | 2 man/measEq.syntax-class.Rd | 4 man/measEq.syntax.Rd | 15 man/measurementInvarianceCat-deprecated.Rd | 2 man/miPowerFit.Rd | 4 man/modindices.mi.Rd | 13 man/monteCarloMed.Rd | 4 man/moreFitIndices.Rd | 6 man/mvrnonnorm.Rd | 2 man/net.Rd | 4 man/nullRMSEA.Rd | 2 man/parcelAllocation.Rd | 8 man/permuteMeasEq.Rd | 18 - man/plotRMSEAdist.Rd | 6 man/plotRMSEApower.Rd | 8 man/plotRMSEApowernested.Rd | 4 man/poolMAlloc.Rd | 8 man/probe2WayMC.Rd | 4 man/probe2WayRC.Rd | 10 man/probe3WayMC.Rd | 2 man/probe3WayRC.Rd | 8 man/quark.Rd | 2 man/reliability.Rd | 21 - man/reliabilityL2.Rd | 4 man/residualCovariate.Rd | 2 man/runMI.Rd | 2 man/twostage.Rd | 4 93 files changed, 1891 insertions(+), 1720 deletions(-)
Title: Composable Preprocessing Operators and Pipelines for Machine
Learning
Description: Toolset that enriches 'mlr' with a diverse set of preprocessing
operators. Composable Preprocessing Operators ("CPO"s) are first-class
R objects that can be applied to data.frames and 'mlr' "Task"s to modify
data, can be attached to 'mlr' "Learner"s to add preprocessing to machine
learning algorithms, and can be composed to form preprocessing pipelines.
Author: Martin Binder [aut, cre],
Bernd Bischl [ctb],
Michel Lang [ctb],
Lars Kotthoff [ctb]
Maintainer: Martin Binder <developer.mb706@doublecaret.com>
Diff between mlrCPO versions 0.3.7 dated 2020-11-15 and 0.3.7-1 dated 2021-01-11
DESCRIPTION | 6 +++--- MD5 | 28 ++++++++++++++-------------- NEWS | 3 +++ R/parameters.R | 9 ++++++++- build/vignette.rds |binary inst/doc/a_1_getting_started.html | 4 ++-- inst/doc/a_2_mlrCPO_core.html | 4 ++-- inst/doc/a_3_all_CPOs.html | 4 ++-- inst/doc/a_4_custom_CPOs.html | 6 +++--- inst/doc/z_1_getting_started_terse.html | 4 ++-- inst/doc/z_2_mlrCPO_core_terse.html | 4 ++-- inst/doc/z_3_all_CPOs_terse.html | 4 ++-- inst/doc/z_4_custom_CPOs_terse.html | 4 ++-- tests/testthat/helper_cpo.R | 2 +- tests/testthat/test_core_basic.R | 10 ++++++---- 15 files changed, 52 insertions(+), 40 deletions(-)
Title: Lasso and Elastic-Net Regularized Generalized Linear Models
Description: Extremely efficient procedures for fitting the entire lasso or elastic-net regularization path for linear regression, logistic and multinomial regression models, Poisson regression, Cox model, multiple-response Gaussian, and the grouped multinomial regression. There are two new and important additions. The family argument can be a GLM family object, which opens the door to any programmed family. This comes with a modest computational cost, so when the built-in families suffice, they should be used instead. The other novelty is the relax option, which refits each of the active sets in the path unpenalized. The algorithm uses cyclical coordinate descent in a path-wise fashion, as described in the papers listed in the URL below.
Author: Jerome Friedman [aut],
Trevor Hastie [aut, cre],
Rob Tibshirani [aut],
Balasubramanian Narasimhan [aut],
Kenneth Tay [aut],
Noah Simon [aut],
Junyang Qian [ctb]
Maintainer: Trevor Hastie <hastie@stanford.edu>
Diff between glmnet versions 4.0-2 dated 2020-06-15 and 4.1 dated 2021-01-11
DESCRIPTION | 12 MD5 | 134 ++-- NAMESPACE | 8 NEWS.md | 15 R/buildPredmat.coxnetlist.R | 14 R/check.dots.R | 42 - R/coxgrad.R | 402 +++++++++++-- R/coxnet.deviance.R | 522 +++++++++++++++-- R/coxpath.R |only R/cv.glmnet.R | 7 R/cv.glmnetfit.R | 2 R/getOptcv.glmnet.R | 8 R/getOptcv.relaxed.R | 9 R/glmnet-package.R | 2 R/glmnet.R | 363 ++++++------ R/glmnet.control.R | 6 R/glmnetFlex.R | 48 + R/makeX.R | 26 R/print.cv.glmnet.R | 5 R/print.cv.relaxed.R | 34 - R/response.coxnet.R | 54 + R/stratifySurv.R |only R/survfit.coxnet.R |only R/survfit.cv.glmnet.R |only build/vignette.rds |binary inst/CITATION | 8 inst/doc/Coxnet.R | 164 +++++ inst/doc/Coxnet.Rmd | 326 ++++++++--- inst/doc/Coxnet.pdf |binary inst/doc/glmnet.R | 478 +++++++++------- inst/doc/glmnet.Rmd | 1133 ++++++++++++++++++++------------------- inst/doc/glmnet.pdf |binary inst/doc/glmnetFamily.R | 50 - inst/doc/glmnetFamily.Rmd | 201 ++---- inst/doc/glmnetFamily.pdf |binary inst/doc/relax.R | 165 +---- inst/doc/relax.Rmd | 504 ++--------------- inst/doc/relax.pdf |binary inst/mortran/wls.m | 2 man/assess.glmnet.Rd | 20 man/beta_CVX.Rd | 4 man/cox.fit.Rd |only man/cox.path.Rd |only man/cox_obj_function.Rd |only man/coxgrad.Rd | 63 +- man/coxnet.deviance.Rd | 116 +++ man/cv.glmnet.Rd | 28 man/elnet.fit.Rd | 21 man/fid.Rd |only man/get_cox_lambda_max.Rd |only man/get_start.Rd | 14 man/glmnet-internal.Rd | 1 man/glmnet.Rd | 146 +++-- man/glmnet.control.Rd | 21 man/glmnet.fit.Rd | 25 man/glmnet.measures.Rd | 6 man/glmnet.path.Rd | 26 man/mycoxph.Rd |only man/mycoxpred.Rd |only man/plot.glmnet.Rd | 24 man/predict.cv.glmnet.Rd | 12 man/predict.glmnet.Rd | 23 man/predict.glmnetfit.Rd | 11 man/print.cv.glmnet.Rd | 3 man/print.glmnet.Rd | 6 man/response.coxnet.Rd |only man/stratifySurv.Rd |only man/survfit.coxnet.Rd |only man/survfit.cv.glmnet.Rd |only man/use.cox.path.Rd |only src/wls.f | 2 vignettes/Coxnet.Rmd | 326 ++++++++--- vignettes/assets/glmnet_refs.bib | 10 vignettes/glmnet.Rmd | 1133 ++++++++++++++++++++------------------- vignettes/glmnetFamily.Rmd | 201 ++---- vignettes/relax.Rmd | 504 ++--------------- 76 files changed, 4196 insertions(+), 3294 deletions(-)
Title: Multiple Fill and Colour Scales in 'ggplot2'
Description: Use multiple fill and colour scales in 'ggplot2'.
Author: Elio Campitelli [cre, aut] (<https://orcid.org/0000-0002-7742-9230>)
Maintainer: Elio Campitelli <elio.campitelli@cima.fcen.uba.ar>
Diff between ggnewscale versions 0.4.4 dated 2020-12-02 and 0.4.5 dated 2021-01-11
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 4 ++++ tests/testthat/Rplots.pdf |binary tests/testthat/test-newscale.R | 4 +++- 5 files changed, 14 insertions(+), 8 deletions(-)
Title: Google's Compact Language Detector 3
Description: Google's Compact Language Detector 3 is a neural network model for language
identification and the successor of 'cld2' (available from CRAN). The algorithm is still
experimental and takes a novel approach to language detection with different properties
and outcomes. It can be useful to combine this with the Bayesian classifier results
from 'cld2'. See <https://github.com/google/cld3#readme> for more information.
Author: Jeroen Ooms [aut, cre] (<https://orcid.org/0000-0002-4035-0289>),
Google Inc [cph] (CLD3 C++ library)
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>
Diff between cld3 versions 1.3 dated 2020-01-31 and 1.4.1 dated 2021-01-11
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NEWS | 7 +++++++ cleanup | 2 +- configure | 50 +++++++++++++++++++++++++------------------------- 5 files changed, 41 insertions(+), 34 deletions(-)
Title: Statistical Framework to Define Subgroups in Complex Datasets
Description: High-dimensional datasets that do not exhibit a clear intrinsic clustered structure pose a challenge to conventional clustering algorithms. For this reason, we developed an unsupervised framework that helps scientists to better subgroup their datasets based on visual cues, please see Gao S, Mutter S, Casey A, Makinen V-P (2019) Numero: a statistical framework to define multivariable subgroups in complex population-based datasets, Int J Epidemiology, 48:369-37, <doi:10.1093/ije/dyy113>. The framework includes the necessary functions to construct a self-organizing map of the data, to evaluate the statistical significance of the observed data patterns, and to visualize the results.
Author: Song Gao [aut],
Stefan Mutter [aut],
Aaron E. Casey [aut],
Ville-Petteri Makinen [aut, cre]
Maintainer: Ville-Petteri Makinen <vpmakine@gmail.com>
Diff between Numero versions 1.7.2 dated 2020-10-24 and 1.7.3 dated 2021-01-11
DESCRIPTION | 8 +- MD5 | 48 ++++++------ R/nroKmeans.R | 6 + R/nroPermute.R | 47 ++++++------ R/nroPlot.save.R | 21 ++--- R/nroPostprocess.R | 1 R/nroTrain.R | 6 + R/numero.clean.R | 5 - R/numero.create.R | 2 R/numero.evaluate.R | 5 - R/numero.plot.R | 8 +- R/numero.prepare.R | 17 +++- R/numero.quality.R | 32 ++++++-- inst/doc/intro.html | 178 ++++++++++++++++++++++++----------------------- inst/extcode/examples.R | 20 +++-- man/nroPermute.Rd | 6 + man/numero.evaluate.Rd | 5 - man/numero.plot.Rd | 8 +- man/numero.prepare.Rd | 2 man/numero.quality.Rd | 4 - man/numero.subrgoup.Rd | 5 - man/numero.summary.Rd | 5 - src/Numero_init.c | 4 - src/nro_circus_paint.cpp | 34 +++++--- src/nro_circus_write.cpp | 8 +- 25 files changed, 281 insertions(+), 204 deletions(-)
Title: Aids in Processing and Plotting Data from a Lemna-Tec
Scananalyzer
Description: Note that 'imageData' has been superseded by 'growthPheno'.
The package 'growthPheno' incorporates all the functionality of
'imageData' and has functionality not available in 'imageData',
but some 'imageData' functions have been renamed.
The 'imageData' package is no longer maintained, but is retained
for legacy purposes.
Author: Chris Brien [aut, cre] (<https://orcid.org/0000-0003-0581-1817>)
Maintainer: Chris Brien <chris.brien@adelaide.edu.au>
Diff between imageData versions 0.1-60 dated 2020-03-22 and 0.1-61 dated 2021-01-11
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- R/dataLongi_v8.r | 4 ++-- build/partial.rdb |binary build/vignette.rds |binary data/RiceRaw.dat.rda |binary data/exampleData.rda |binary inst/News.Rd | 4 ++++ inst/doc/imageData-manual.pdf |binary 9 files changed, 18 insertions(+), 14 deletions(-)
Title: Estimating Fixed Effects Individual Slope Models
Description: Provides the function feis() to estimate fixed effects individual
slope (FEIS) models. The FEIS model constitutes a more general version of
the often-used fixed effects (FE) panel model, as implemented in the
package 'plm' by Croissant and Millo (2008) <doi:10.18637/jss.v027.i02>.
In FEIS models, data are not only person demeaned like in conventional
FE models, but detrended by the predicted individual slope of each
person or group. Estimation is performed by applying least squares lm()
to the transformed data. For more details on FEIS models see Bruederl and
Ludwig (2015, ISBN:1446252442); Frees (2001) <doi:10.2307/3316008>;
Polachek and Kim (1994) <doi:10.1016/0304-4076(94)90075-2>;
Ruettenauer and Ludwig (2020) <doi:10.1177/0049124120926211>;
Wooldridge (2010, ISBN:0262294354). To test consistency of conventional FE
and random effects estimators against heterogeneous slopes, the package
also provides the functions feistest() for an artificial regression test
and bsfeistest() for a bootstrapped version of the Hausman test.
Author: Tobias Ruettenauer [aut, cre] (<https://orcid.org/0000-0001-5747-9735>),
Volker Ludwig [aut] (<https://orcid.org/0000-0003-3118-3172>)
Maintainer: Tobias Ruettenauer <ruettenauer@sowi.uni-kl.de>
Diff between feisr versions 1.1.2 dated 2021-01-05 and 1.1.3 dated 2021-01-11
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ NEWS.md | 4 ++++ R/utility_functions.R | 1 + build/partial.rdb |binary inst/doc/feisr-vignette.html | 4 ++-- tests/testthat/test_detrend.R | 10 ++++++++-- 7 files changed, 24 insertions(+), 13 deletions(-)
Title: A Utility Package to Help you Deal with "Pignas"
Description: Pigna [_pìn'n'a_] is the Italian word for pine
cone. In jargon, it is used to identify a task which is boring,
banal, annoying, painful, frustrating and maybe even with a not so
beautiful or rewarding result, just like the obstinate act of trying
to challenge yourself in extracting pine nuts from a pine cone,
provided that, in the end, you will find at least one inside it. Here
you can find a backpack of functions to be used to solve small
everyday problems of coding or analyzing (clinical) data, which would
be normally solved using quick-and-dirty patches. You will be able to
convert 'Hmisc' and 'rms' summary()es into data.frames ready to be
rendered by 'pander' and 'knitr'. You can access easy-to-use wrappers
to activate essential but useful progress bars (from 'progress') into
your loops or functionals. Easy setup and control Telegram's bots
(from 'telegram.bot') to send messages or to divert error messages to
a Telegram's chat. You also have some utilities helping you in the
development of packages, like the activation of the same user
interface of 'usethis' into your package, or call polite functions to
ask a user to install other packages. Finally, you find a set of
thematic sets of packages you may use to set up new environments
quickly, installing them in a single call.
Author: Corrado Lanera [aut, cre, cph]
Maintainer: Corrado Lanera <corrado.lanera@gmail.com>
Diff between depigner versions 0.8.3 dated 2020-10-02 and 0.8.4 dated 2021-01-11
DESCRIPTION | 17 +- MD5 | 86 ++++++------- NEWS.md | 11 + R/adjust_p.R | 21 +-- R/chat_id_from_name.R | 10 - R/ci2p.R | 4 R/gdp.R | 8 - R/htypes.R | 44 +++--- R/imported_from.R | 10 - R/install_pkg_set.R | 2 R/paired_test_categorical.R | 26 +-- R/paired_test_continuous.R | 42 +++--- R/pb_len.R | 6 R/send_to_telegram.R | 2 R/summary_interact.R | 26 +-- R/tidy_summary.R | 53 +++----- R/use_ui.R | 4 R/usethis_utils.R | 20 +-- R/utils.R | 10 - README.md | 171 +++++++++----------------- inst/WORDLIST | 70 ++++------ inst/bib/doc-pkg.bib | 11 - man/gdp.Rd | 2 man/htype.Rd | 12 - man/is_hdesc.Rd | 4 man/paired_test_continuous.Rd | 10 - man/pb_len.Rd | 2 man/tidy_summary.Rd | 26 +-- tests/testthat/test-adjust_p.R | 18 +- tests/testthat/test-chat_id_from_name.R | 12 - tests/testthat/test-check_for_bot_options.R | 14 -- tests/testthat/test-check_pkg.R | 4 tests/testthat/test-ci2p.R | 8 - tests/testthat/test-gdp.R | 4 tests/testthat/test-htypes.R | 14 +- tests/testthat/test-paired_test_categorical.R | 39 ++--- tests/testthat/test-paired_test_continuous.R | 36 ++--- tests/testthat/test-pb_len.R | 4 tests/testthat/test-send_to_telegram.R | 15 +- tests/testthat/test-start_bot_for_chat.R | 29 ++-- tests/testthat/test-summary_interact.R | 24 +-- tests/testthat/test-tidy_summary.R | 22 +-- tests/testthat/test-use_ui.R | 2 tests/testthat/test-utils.R | 24 +-- 44 files changed, 457 insertions(+), 522 deletions(-)
Title: Guide Sequence Design for CRISPR/Cas9
Description: Designs guide sequences for CRISPR/Cas9 genome editing and
provides information on sequence features pertinent to guide
efficiency. Sequence features include annotated off-target
predictions in a user-selected genome and a predicted efficiency
score based on the model described in Doench et al. (2016)
<doi:10.1038/nbt.3437>. Users are able to import additional genomes
and genome annotation files to use when searching and annotating
off-target hits. All guide sequences and off-target data can be
generated through the 'R' console with sgRNA_Design() or through
'crispRdesignR's' user interface with crispRdesignRUI(). CRISPR
(Clustered Regularly Interspaced Short Palindromic Repeats) and the
associated protein Cas9 refer to a technique used in genome editing.
Author: Dylan Beeber [aut, cre],
Frederic Chain [aut]
Maintainer: Dylan Beeber <dylan.beeber@gmail.com>
Diff between crispRdesignR versions 1.1.5 dated 2020-05-26 and 1.1.6 dated 2021-01-11
DESCRIPTION | 6 +- MD5 | 7 +- R/sgRNA_design.R | 130 +++++++++++++++++++++++++-------------------------- README.md |only inst/apps/RunShiny.R | 39 ++++++++++----- 5 files changed, 98 insertions(+), 84 deletions(-)
Title: Subpopulation Treatment Effect Pattern Plot (STEPP)
Description: A method to explore the treatment-covariate interactions in survival or generalized
linear model (GLM) for continuous, binomial and count data arising from two or more treatment
arms of a clinical trial. A permutation distribution approach to inference is implemented,
based on permuting the covariate values within each treatment group.
Bonetti M, Gelber RD (2004) <DOI:10.1093/biostatistics/5.3.465>.
Marco Bonetti, David Zahrieh, Bernard F. Cole, and Richard D. Gelber (2009) <doi:10.1002/sim.3524>.
Ann A. Lazar, Bernard F. Cole, Marco Bonetti, and Richard D. Gelber (2010) <doi:10.1200/JCO.2009.27.9182>.
Lazar AA,Bonetti M,Cole BF,Yip WK,Gelber RD (2016) <doi:10.1177/1740774515609106>.
Wai-Ki Yip,Marco Bonetti,Bernard F Cole,William Barcella,Xin Victoria Wang,Ann Lazar,and Richard D Gelber (2016) <doi:10.1177/1740774516643297>.
Wang XV, Cole B, Bonetti M, Gelber RD (2016) <doi:10.1002/sim.6958>.
Wai-Ki Yip (2017, ISBN:978-3-319-48846-2).
Author: Wai-ki Yip [aut, cre],
Ann Lazar [ctb],
David Zahrieh [ctb],
Chip Cole [ctb],
Ann Lazar [ctb],
Marco Bonetti [ctb],
Victoria Wang [ctb],
William Barcella [ctb],
Sergio Venturini [ctb, cre]
Richard Gelber [ctb]
Maintainer: Wai-ki Yip <yuser86@yahoo.com>
Diff between stepp versions 3.2.0.0 dated 2018-07-26 and 3.2.2 dated 2021-01-11
DESCRIPTION | 29 MD5 | 84 + NAMESPACE | 14 R/stepp.R | 284 +++--- R/steppes.R | 1717 +++++++++++++++++++--------------------- R/stmodel.R | 21 R/stmodelCI.R | 1085 ++++++++++++------------- R/stmodelGLM.R | 1875 ++++++++++++++++++++++---------------------- R/stmodelKM.R | 1394 ++++++++++++++++---------------- R/stsubpop.R | 868 +++++++++++--------- R/stutil.R | 156 +-- R/stwin.R | 290 +++--- R/utility.R |only R/zzz.R |only data/balance_example.rda |only man/analyze.CumInc.stepp.Rd | 369 ++++---- man/analyze.KM.stepp.Rd | 359 ++++---- man/aspirin.Rd | 148 +-- man/balance_example.Rd |only man/balance_patients.Rd |only man/bigCI.Rd | 154 +-- man/bigKM.Rd | 154 +-- man/estimate.Rd | 62 - man/gen.tailwin.Rd | 78 - man/generate.Rd | 62 - man/stepp.CI.Rd | 198 ++-- man/stepp.GLM.Rd | 110 +- man/stepp.KM.Rd | 180 ++-- man/stepp.Rd | 349 ++++---- man/stepp.edge.Rd | 110 +- man/stepp.rnote.Rd | 53 - man/stepp.subpop.Rd | 120 +- man/stepp.test.Rd | 137 +-- man/stepp.win.Rd | 163 ++- man/stepp_plot.Rd | 191 ++-- man/stepp_print.Rd | 121 +- man/stepp_summary.Rd | 97 +- man/steppes-class.Rd | 156 +-- man/stmodel-class.Rd | 62 - man/stmodelCI-class.Rd | 268 +++--- man/stmodelGLM-class.Rd | 226 ++--- man/stmodelKM-class.Rd | 252 ++--- man/stsubpop-class.Rd | 175 ++-- man/stwin-class.Rd | 174 ++-- man/test.Rd | 62 - tests |only 46 files changed, 6267 insertions(+), 6140 deletions(-)