Title: Run Code 'With' Temporarily Modified Global State
Description: A set of functions to run code 'with' safely and
temporarily modified global state. Many of these functions were
originally a part of the 'devtools' package, this provides a simple
package with limited dependencies to provide access to these
functions.
Author: Jim Hester [aut, cre],
Kirill Müller [aut],
Kevin Ushey [aut],
Hadley Wickham [aut],
Winston Chang [aut],
Jennifer Bryan [ctb],
Richard Cotton [ctb],
RStudio [cph]
Maintainer: Jim Hester <james.f.hester@gmail.com>
Diff between withr versions 2.3.0 dated 2020-09-22 and 2.4.0 dated 2021-01-15
DESCRIPTION | 8 ++++---- LICENSE |only MD5 | 13 +++++++------ NAMESPACE | 1 + NEWS.md | 8 ++++++++ R/seed.R | 1 + inst/doc/changing-and-restoring-state.html | 10 ++++++++++ tests/testthat/test-devices.R | 8 ++++---- 8 files changed, 35 insertions(+), 14 deletions(-)
Title: Data Sharpening
Description: Functions and data sets inspired by data sharpening -
data perturbation to achieve improved performance in
nonparametric estimation, as described in Choi, E., Hall, P.
and Rousson, V. (2000) <doi:10.1214/aos/1015957396>.
Capabilities for enhanced local linear regression function
and derivative estimation are included, as well as an
asymptotically correct iterated data sharpening estimator
for any degree of local polynomial regression estimation.
A cross-validation-based bandwidth selector is included which,
in concert with the iterated sharpener, will often provide
superior performance, according to a median integrated squared
error criterion. Sample data sets are provided to illustrate
function usage.
Author: W.J. Braun
Maintainer: W.J. Braun <john.braun@ubc.ca>
Diff between sharpData versions 1.2 dated 2019-08-19 and 1.3 dated 2021-01-15
sharpData-1.2/sharpData/R/LL.fit.R |only sharpData-1.2/sharpData/R/LLmat.R |only sharpData-1.2/sharpData/R/LLmono.R |only sharpData-1.2/sharpData/R/NW.fit.R |only sharpData-1.2/sharpData/R/NWmat.R |only sharpData-1.2/sharpData/R/NWmono.R |only sharpData-1.2/sharpData/man/LL.fit.Rd |only sharpData-1.2/sharpData/man/LLmat.Rd |only sharpData-1.2/sharpData/man/LLmono.Rd |only sharpData-1.2/sharpData/man/NW.fit.Rd |only sharpData-1.2/sharpData/man/NWmat.Rd |only sharpData-1.2/sharpData/man/NWmono.Rd |only sharpData-1.3/sharpData/DESCRIPTION | 10 - sharpData-1.3/sharpData/MD5 | 26 +-- sharpData-1.3/sharpData/NAMESPACE | 2 sharpData-1.3/sharpData/R/MonoMat.R |only sharpData-1.3/sharpData/R/Monolpoly.R |only sharpData-1.3/sharpData/data/burnRate.rda |binary sharpData-1.3/sharpData/man/MonoMat.Rd |only sharpData-1.3/sharpData/man/Monolpoly.Rd |only sharpData-1.3/sharpData/man/burnRate.Rd | 4 sharpData-1.3/sharpData/src/sharpData.f | 206 +++++------------------------- 22 files changed, 57 insertions(+), 191 deletions(-)
Title: Mixture Models for Clustering and Classification
Description: An implementation of 14 parsimonious mixture models for model-based clustering or model-based classification. Gaussian, generalized hyperbolic, variance-gamma or skew-t mixtures are available. All approaches work with missing data. Celeux and Govaert (1995) <doi:10.1016/0031-3203(94)00125-6>, Browne and McNicholas (2014) <doi:10.1007/s11634-013-0139-1>, Browne and McNicholas (2015) <doi:10.1002/cjs.11246>.
Author: Nik Pocuca [aut],
Ryan P. Browne [aut],
Paul D. McNicholas [aut, cre]
Maintainer: Paul D. McNicholas <mcnicholas@math.mcmaster.ca>
Diff between mixture versions 2.0.0 dated 2021-01-11 and 2.0.1 dated 2021-01-15
ChangeLog | 9 +++++++-- DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- configure | 21 +++++++++++---------- configure.ac | 3 ++- man/mixture.Rd | 6 +++--- src/GH_Model/GH_Mixture_Model.h | 2 +- src/ST_Model/ST_Mixture_Model.h | 6 +++--- src/VG_Model/VG_Mixture_Model.h | 2 +- 9 files changed, 40 insertions(+), 33 deletions(-)
Title: Direct Labels for Multicolor Plots
Description: An extensible framework
for automatically placing direct labels onto multicolor 'lattice' or
'ggplot2' plots.
Label positions are described using Positioning Methods
which can be re-used across several different plots.
There are heuristics for examining "trellis" and "ggplot" objects
and inferring an appropriate Positioning Method.
Author: Toby Dylan Hocking
Maintainer: Toby Dylan Hocking <toby.hocking@r-project.org>
Diff between directlabels versions 2020.12.29 dated 2021-01-05 and 2021.1.13 dated 2021-01-15
DESCRIPTION | 6 ++-- MD5 | 12 ++++----- NEWS | 26 +++++++++++++------- inst/doc/examples.R | 5 +--- inst/doc/examples.Rmd | 13 ++++++++-- inst/doc/examples.html | 61 ++++++++++++++++++++++++++++++++----------------- vignettes/examples.Rmd | 13 ++++++++-- 7 files changed, 88 insertions(+), 48 deletions(-)
Title: Statistical Methods for Sensitivity Analysis in Meta-Analysis
Description: The following methods are implemented to evaluate how sensitive the results of a meta-analysis are to potential bias in meta-analysis and to support Schwarzer et al. (2015) <DOI:10.1007/978-3-319-21416-0>, Chapter 5 'Small-Study Effects in Meta-Analysis':
- Copas selection model described in Copas & Shi (2001) <DOI:10.1177/096228020101000402>;
- limit meta-analysis by Rücker et al. (2011) <DOI:10.1093/biostatistics/kxq046>;
- upper bound for outcome reporting bias by Copas & Jackson (2004) <DOI:10.1111/j.0006-341X.2004.00161.x>;
- imputation methods for missing binary data by Gamble & Hollis (2005) <DOI:10.1016/j.jclinepi.2004.09.013> and Higgins et al. (2008) <DOI:10.1177/1740774508091600>;
- LFK index test and Doi plot by Furuya-Kanamori et al. (2018) <DOI:10.1097/XEB.0000000000000141>.
Author: Guido Schwarzer [cre, aut] (<https://orcid.org/0000-0001-6214-9087>),
James R. Carpenter [aut] (<https://orcid.org/0000-0003-3890-6206>),
Gerta Rücker [aut] (<https://orcid.org/0000-0002-2192-2560>)
Maintainer: Guido Schwarzer <sc@imbi.uni-freiburg.de>
Diff between metasens versions 0.5-0 dated 2020-09-29 and 0.6-0 dated 2021-01-15
DESCRIPTION | 16 ++++++++-------- MD5 | 20 ++++++++++++-------- NAMESPACE | 6 ++++++ NEWS.md | 31 ++++++++++++++++++++++++++----- R/copas.R | 7 ++++++- R/doiplot.R |only R/funnel.limitmeta.R | 32 +++++++++++++++++++++++++++----- R/lfkindex.R |only R/orbbound.R | 2 +- man/doiplot.Rd |only man/funnel.limitmeta.Rd | 4 ++++ man/lfkindex.Rd |only man/orbbound.Rd | 2 +- 13 files changed, 91 insertions(+), 29 deletions(-)
Title: Import and Analyse Ego-Centered Network Data
Description: Tools for importing, analyzing and visualizing ego-centered
network data. Supports several data formats, including the export formats of
'EgoNet', 'EgoWeb 2.0' and 'openeddi'. An interactive (shiny) app for the
intuitive visualization of ego-centered networks is provided. Also included
are procedures for creating and visualizing Clustered Graphs
(Lerner 2008 <DOI:10.1109/PACIFICVIS.2008.4475458>).
Author: Till Krenz [aut, cre],
Pavel N. Krivitsky [aut],
Raffaele Vacca [aut],
Michal Bojanowski [aut] (<https://orcid.org/0000-0001-7503-852X>),
Markus Gamper [ctb],
Andreas Herz [aut],
Christopher McCarty [ctb]
Maintainer: Till Krenz <egor@tillt.net>
Diff between egor versions 0.20.06 dated 2020-06-12 and 0.21.01 dated 2021-01-15
egor-0.20.06/egor/man/as_alters_df.Rd |only egor-0.20.06/egor/tests/testthat/test_clustered_graphs.R |only egor-0.20.06/egor/tests/testthat/test_composition.R |only egor-0.20.06/egor/tests/testthat/test_conversions.R |only egor-0.20.06/egor/tests/testthat/test_density.R |only egor-0.20.06/egor/tests/testthat/test_dplyr_methods.R |only egor-0.20.06/egor/tests/testthat/test_egor.R |only egor-0.20.06/egor/tests/testthat/test_egoweb.R |only egor-0.20.06/egor/tests/testthat/test_ei.R |only egor-0.20.06/egor/tests/testthat/test_openeddi.R |only egor-0.20.06/egor/tests/testthat/test_read.R |only egor-0.20.06/egor/tests/testthat/test_read_three_files.R |only egor-0.20.06/egor/tests/testthat/test_vis_app.R |only egor-0.21.01/egor/DESCRIPTION | 23 egor-0.21.01/egor/MD5 | 257 ++-- egor-0.21.01/egor/NAMESPACE | 6 egor-0.21.01/egor/R/composition.R | 70 - egor-0.21.01/egor/R/conversions.R | 160 ++ egor-0.21.01/egor/R/count_dyads.R | 19 egor-0.21.01/egor/R/data.R | 35 egor-0.21.01/egor/R/density.R | 69 - egor-0.21.01/egor/R/dplyr_methods.R | 17 egor-0.21.01/egor/R/ego.design.R | 2 egor-0.21.01/egor/R/ego_constraint.R | 10 egor-0.21.01/egor/R/egor.R | 213 ++- egor-0.21.01/egor/R/egor_doc.R | 15 egor-0.21.01/egor/R/ei.R | 96 + egor-0.21.01/egor/R/gss2004.R | 144 +- egor-0.21.01/egor/R/helper.R | 88 + egor-0.21.01/egor/R/plot_ego_gram.R | 66 - egor-0.21.01/egor/R/plot_ego_graph.R | 27 egor-0.21.01/egor/R/plot_egor.R | 45 egor-0.21.01/egor/R/read.ego.folders.R | 69 - egor-0.21.01/egor/R/read.egonet.R | 112 + egor-0.21.01/egor/R/zzz.R | 37 egor-0.21.01/egor/build/vignette.rds |binary egor-0.21.01/egor/data/alter_df.rda |only egor-0.21.01/egor/data/ego_df.rda |only egor-0.21.01/egor/data/gss2004.rda |only egor-0.21.01/egor/data/transnat.rda |only egor-0.21.01/egor/inst/create_example_data.R |only egor-0.21.01/egor/inst/doc/egor_allbus.Rmd | 5 egor-0.21.01/egor/inst/doc/egor_allbus.html | 406 +----- egor-0.21.01/egor/inst/doc/using_egor.R | 3 egor-0.21.01/egor/inst/doc/using_egor.Rmd | 5 egor-0.21.01/egor/inst/doc/using_egor.html | 941 ++++++--------- egor-0.21.01/egor/inst/extdata/alters_32/1.csv | 29 egor-0.21.01/egor/inst/extdata/alters_32/10.csv | 33 egor-0.21.01/egor/inst/extdata/alters_32/11.csv | 32 egor-0.21.01/egor/inst/extdata/alters_32/12.csv | 22 egor-0.21.01/egor/inst/extdata/alters_32/13.csv | 25 egor-0.21.01/egor/inst/extdata/alters_32/14.csv | 34 egor-0.21.01/egor/inst/extdata/alters_32/15.csv | 30 egor-0.21.01/egor/inst/extdata/alters_32/16.csv | 23 egor-0.21.01/egor/inst/extdata/alters_32/17.csv | 32 egor-0.21.01/egor/inst/extdata/alters_32/18.csv | 24 egor-0.21.01/egor/inst/extdata/alters_32/19.csv | 24 egor-0.21.01/egor/inst/extdata/alters_32/2.csv | 21 egor-0.21.01/egor/inst/extdata/alters_32/20.csv | 29 egor-0.21.01/egor/inst/extdata/alters_32/21.csv | 32 egor-0.21.01/egor/inst/extdata/alters_32/22.csv | 28 egor-0.21.01/egor/inst/extdata/alters_32/23.csv | 32 egor-0.21.01/egor/inst/extdata/alters_32/24.csv | 26 egor-0.21.01/egor/inst/extdata/alters_32/25.csv | 30 egor-0.21.01/egor/inst/extdata/alters_32/26.csv | 37 egor-0.21.01/egor/inst/extdata/alters_32/27.csv | 34 egor-0.21.01/egor/inst/extdata/alters_32/28.csv | 33 egor-0.21.01/egor/inst/extdata/alters_32/29.csv | 36 egor-0.21.01/egor/inst/extdata/alters_32/3.csv | 31 egor-0.21.01/egor/inst/extdata/alters_32/30.csv | 33 egor-0.21.01/egor/inst/extdata/alters_32/31.csv | 24 egor-0.21.01/egor/inst/extdata/alters_32/32.csv | 39 egor-0.21.01/egor/inst/extdata/alters_32/4.csv | 36 egor-0.21.01/egor/inst/extdata/alters_32/5.csv | 34 egor-0.21.01/egor/inst/extdata/alters_32/6.csv | 30 egor-0.21.01/egor/inst/extdata/alters_32/7.csv | 30 egor-0.21.01/egor/inst/extdata/alters_32/8.csv | 27 egor-0.21.01/egor/inst/extdata/alters_32/9.csv | 26 egor-0.21.01/egor/inst/extdata/edges_32/1.csv | 127 -- egor-0.21.01/egor/inst/extdata/edges_32/10.csv | 210 --- egor-0.21.01/egor/inst/extdata/edges_32/11.csv | 189 --- egor-0.21.01/egor/inst/extdata/edges_32/12.csv | 52 egor-0.21.01/egor/inst/extdata/edges_32/13.csv | 86 - egor-0.21.01/egor/inst/extdata/edges_32/14.csv | 214 --- egor-0.21.01/egor/inst/extdata/edges_32/15.csv | 147 -- egor-0.21.01/egor/inst/extdata/edges_32/16.csv | 68 - egor-0.21.01/egor/inst/extdata/edges_32/17.csv | 175 -- egor-0.21.01/egor/inst/extdata/edges_32/18.csv | 75 - egor-0.21.01/egor/inst/extdata/edges_32/19.csv | 69 - egor-0.21.01/egor/inst/extdata/edges_32/2.csv | 52 egor-0.21.01/egor/inst/extdata/edges_32/20.csv | 140 -- egor-0.21.01/egor/inst/extdata/edges_32/21.csv | 184 -- egor-0.21.01/egor/inst/extdata/edges_32/22.csv | 122 - egor-0.21.01/egor/inst/extdata/edges_32/23.csv | 182 -- egor-0.21.01/egor/inst/extdata/edges_32/24.csv | 89 - egor-0.21.01/egor/inst/extdata/edges_32/25.csv | 155 -- egor-0.21.01/egor/inst/extdata/edges_32/26.csv | 279 ---- egor-0.21.01/egor/inst/extdata/edges_32/27.csv | 217 --- egor-0.21.01/egor/inst/extdata/edges_32/28.csv | 196 --- egor-0.21.01/egor/inst/extdata/edges_32/29.csv | 263 ---- egor-0.21.01/egor/inst/extdata/edges_32/3.csv | 168 -- egor-0.21.01/egor/inst/extdata/edges_32/30.csv | 196 --- egor-0.21.01/egor/inst/extdata/edges_32/31.csv | 69 - egor-0.21.01/egor/inst/extdata/edges_32/32.csv | 332 ----- egor-0.21.01/egor/inst/extdata/edges_32/4.csv | 261 ---- egor-0.21.01/egor/inst/extdata/edges_32/5.csv | 221 --- egor-0.21.01/egor/inst/extdata/edges_32/6.csv | 148 -- egor-0.21.01/egor/inst/extdata/edges_32/7.csv | 151 -- egor-0.21.01/egor/inst/extdata/edges_32/8.csv | 102 - egor-0.21.01/egor/inst/extdata/edges_32/9.csv | 91 - egor-0.21.01/egor/inst/extdata/egos_32.csv | 66 - egor-0.21.01/egor/man/EI.Rd | 51 egor-0.21.01/egor/man/allbus_2010_simulated.Rd | 2 egor-0.21.01/egor/man/as_tibble.egor.Rd |only egor-0.21.01/egor/man/comp_ply.Rd | 4 egor-0.21.01/egor/man/count_dyads.Rd | 2 egor-0.21.01/egor/man/ego_design.Rd | 2 egor-0.21.01/egor/man/egor-package-doc.Rd | 15 egor-0.21.01/egor/man/egor.Rd | 19 egor-0.21.01/egor/man/egor_options.Rd |only egor-0.21.01/egor/man/gss2004.Rd | 5 egor-0.21.01/egor/man/onefile_to_egor.Rd | 6 egor-0.21.01/egor/man/plot_egor.Rd | 54 egor-0.21.01/egor/man/return_results.Rd |only egor-0.21.01/egor/man/summary.egor.Rd | 11 egor-0.21.01/egor/man/transnat.Rd |only egor-0.21.01/egor/tests/testthat/test-alts_diversity.R |only egor-0.21.01/egor/tests/testthat/test-clustered_graphs.R |only egor-0.21.01/egor/tests/testthat/test-composition.R |only egor-0.21.01/egor/tests/testthat/test-conversions.R |only egor-0.21.01/egor/tests/testthat/test-count_dyads.R | 12 egor-0.21.01/egor/tests/testthat/test-density.R |only egor-0.21.01/egor/tests/testthat/test-dplyr_methods.R |only egor-0.21.01/egor/tests/testthat/test-ego_constraint.R | 12 egor-0.21.01/egor/tests/testthat/test-ego_design.R |only egor-0.21.01/egor/tests/testthat/test-egor.R |only egor-0.21.01/egor/tests/testthat/test-egoweb.R |only egor-0.21.01/egor/tests/testthat/test-ei.R |only egor-0.21.01/egor/tests/testthat/test-openeddi.R |only egor-0.21.01/egor/tests/testthat/test-plot_egor.R | 88 + egor-0.21.01/egor/tests/testthat/test-print.R | 7 egor-0.21.01/egor/tests/testthat/test-read.R |only egor-0.21.01/egor/tests/testthat/test-read_three_files.R |only egor-0.21.01/egor/tests/testthat/test-return_results.R |only egor-0.21.01/egor/tests/testthat/test-twofiles_to_egor.R | 99 + egor-0.21.01/egor/tests/testthat/test-vis_app.R |only egor-0.21.01/egor/vignettes/egor_allbus.Rmd | 5 egor-0.21.01/egor/vignettes/using_egor.Rmd | 5 148 files changed, 3293 insertions(+), 6098 deletions(-)
Title: Convolution-Based Nonstationary Spatial Modeling
Description: Fits convolution-based nonstationary
Gaussian process models to point-referenced spatial data. The nonstationary
covariance function allows the user to specify the underlying correlation
structure and which spatial dependence parameters should be allowed to
vary over space: the anisotropy, nugget variance, and process variance.
The parameters are estimated via maximum likelihood, using a local
likelihood approach. Also provided are functions to fit stationary spatial
models for comparison, calculate the Kriging predictor and standard errors,
and create various plots to visualize nonstationarity.
Author: Mark D. Risser [aut, cre]
Maintainer: Mark D. Risser <markdrisser@gmail.com>
Diff between convoSPAT versions 1.2.6 dated 2020-01-23 and 1.2.7 dated 2021-01-15
DESCRIPTION | 10 ++++----- MD5 | 40 +++++++++++++++++++-------------------- R/convoSPAT_simulate.R | 6 +++++ man/Aniso_fit.Rd | 21 +++++++++++++++----- man/NSconvo_fit.Rd | 40 +++++++++++++++++++++++++++++---------- man/NSconvo_sim.Rd | 25 ++++++++++++++++++------ man/US.mc.grids.Rd | 6 +++-- man/US.prediction.locs.Rd | 6 +++-- man/USprecip97.Rd | 6 +++-- man/cov_spatial.Rd | 8 +++++-- man/f_mc_kernels.Rd | 13 +++++++++--- man/make_global_loglik1_kappa.Rd | 3 -- man/make_global_loglik2_kappa.Rd | 11 ++++++++-- man/make_global_loglik3_kappa.Rd | 11 ++++++++-- man/make_global_loglik4_kappa.Rd | 12 +++++++++-- man/make_local_lik.Rd | 18 +++++++++++++---- man/plot.Aniso.Rd | 3 -- man/plot.NSconvo.Rd | 19 ++++++++++++++---- man/predict.Aniso.Rd | 9 ++++++-- man/predict.NSconvo.Rd | 9 ++++++-- man/simdata.Rd | 6 +++-- 21 files changed, 201 insertions(+), 81 deletions(-)
Title: A Method to Estimate the Accuracy and Biogeographical Status of
Georeferenced Biological Data
Description: Automated assessment of accuracy and geographical status of georeferenced biological data. The methods rely on reference regions, namely checklists and range maps. Includes functions to obtain data from the Global Biodiversity Information Facility <https://www.gbif.org/> and from the Global Inventory of Floras and Traits <https://gift.uni-goettingen.de/home>. Alternatively, the user can input their own data. Furthermore, provides easy visualisation of the data and the results through the plotting functions. Especially suited for large datasets. The reference for the methodology is: Arlé et al. (under review).
Author: Eduardo Arlé [aut, cre],
Alexander Zizka [aut],
Patrick Weigelt [ctb],
Sam Levin [ctb],
Carsten Meyer [ths]
Maintainer: Eduardo Arlé <eduardo.arle@idiv.de>
Diff between bRacatus versions 1.0.1 dated 2020-12-11 and 1.0.2 dated 2021-01-15
DESCRIPTION | 20 +++++++++++++------- MD5 | 18 +++++++++--------- NEWS.md | 11 +++++++++++ R/giftRegions.R | 24 +++++++++++++----------- R/internal_functions.R | 11 ++++++----- build/vignette.rds |binary inst/doc/Using_bRacatus.html | 19 ++++++++++++++++--- man/signals.Rd | 32 ++++++++++++++++---------------- man/signals_2.Rd | 32 ++++++++++++++++---------------- man/signals_3.Rd | 32 ++++++++++++++++---------------- 10 files changed, 116 insertions(+), 83 deletions(-)
Title: Binary Expansion Testing
Description: Nonparametric detection of nonuniformity and dependence with Binary Expansion Testing (BET). See Kai Zhang (2019) BET on Independence, Journal of the American Statistical Association, 114:528, 1620-1637, <DOI:10.1080/01621459.2018.1537921> and Zhigen Zhao, Michael Baiocchi, Kai Zhang. SorBET: A Fast and Powerful Algorithm to Test Dependence of Variables.
Author: Wan Zhang [aut, cre],
Zhigen Zhao [aut],
Michael Baiocchi [aut],
Kai Zhang [aut]
Maintainer: Wan Zhang <wanz63@live.unc.edu>
Diff between BET versions 0.3.0 dated 2021-01-12 and 0.3.1 dated 2021-01-15
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- build/partial.rdb |binary src/BET.h | 18 ++++-------------- src/BET3.cpp | 48 +++++++++++++++++++++++++----------------------- 5 files changed, 36 insertions(+), 44 deletions(-)
Title: Pull Data from an 'ArcGIS REST' API
Description: Functions to efficiently query 'ArcGIS REST' APIs
<https://developers.arcgis.com/rest/>.
Both spatial and SQL queries can be used to retrieve data.
Simple Feature (sf) objects are utilized to perform spatial queries.
This package was neither produced nor is maintained by Esri.
Author: Paul Frater [aut, cre] (<https://orcid.org/0000-0002-7237-6563>),
Zac Driscoll [aut] (<https://orcid.org/0000-0002-8233-0980>)
Maintainer: Paul Frater <paul.frater@wisconsin.gov>
Diff between arcpullr versions 0.1 dated 2021-01-15 and 0.1.1 dated 2021-01-15
DESCRIPTION | 19 ++++++++++--------- MD5 | 17 +++++++++-------- NAMESPACE | 1 + R/retrieve_layers_by_geometry.R | 22 +++++++++++++++++++--- R/utilities.R | 38 ++++++++++++++++++++++++++------------ inst/doc/intro_to_arcpullr.html | 2 +- man/format_coords.Rd | 14 ++++++-------- man/get_layers_by_spatial.Rd | 2 +- man/get_sf_crs.Rd |only tests/testthat/test_utilities.R | 5 +++++ 10 files changed, 78 insertions(+), 42 deletions(-)
Title: One-Step Estimation
Description: Provide principally an eponymic function that numerically computes the Le Cam one-step estimator which is asymptotically efficient (see e.g. L. Le Cam (1956) <https://projecteuclid.org/euclid.bsmsp/1200501652>) and can be computed faster than the maximum likelihood estimator for large observation samples.
Author: Alexandre Brouste, Darel Noutsa Mieniedou, Christophe Dutang
Maintainer: Christophe Dutang <christophe.dutang@ensimag.fr>
Diff between OneStep versions 0.9.1 dated 2020-09-16 and 0.9.2 dated 2021-01-15
DESCRIPTION | 8 MD5 | 31 + NAMESPACE | 5 R/benchonestep-replicate.R |only R/benchonestep.R | 38 ++ R/onestep-closedform.R | 435 ++++++++++++++++----------- R/onestep-generic.R | 40 +- R/onestep.R | 22 + R/util-checkparamlist.R |only build/partial.rdb |binary inst/NEWS | 11 man/benchonestep.Rd | 37 +- man/onestep.Rd | 98 ++++-- tests/t-Pareto.R | 26 - tests/t-benchonestep-4-closeform.R |only tests/t-benchonestep-4-defensive.R |only tests/t-benchonestep-replicate-4-closeform.R |only tests/t-onestep-4-closedform-defensive.R |only tests/t-onestep-4-closedform.R | 62 +++ tests/t-onestep-4-numeric.R |only 20 files changed, 552 insertions(+), 261 deletions(-)
Title: Automatically Position Non-Overlapping Text Labels with
'ggplot2'
Description: Provides text and label geoms for 'ggplot2' that help to avoid
overlapping text labels. Labels repel away from each other and away from the
data points.
Author: Kamil Slowikowski [aut, cre] (<https://orcid.org/0000-0002-2843-6370>),
Alicia Schep [ctb] (<https://orcid.org/0000-0002-3915-0618>),
Sean Hughes [ctb] (<https://orcid.org/0000-0002-9409-9405>),
Trung Kien Dang [ctb] (<https://orcid.org/0000-0001-7562-6495>),
Saulius Lukauskas [ctb],
Jean-Olivier Irisson [ctb] (<https://orcid.org/0000-0003-4920-3880>),
Zhian N Kamvar [ctb] (<https://orcid.org/0000-0003-1458-7108>),
Thompson Ryan [ctb] (<https://orcid.org/0000-0002-0450-8181>),
Dervieux Christophe [ctb] (<https://orcid.org/0000-0003-4474-2498>),
Yutani Hiroaki [ctb],
Pierre Gramme [ctb],
Amir Masoud Abdol [ctb],
Malcolm Barrett [ctb] (<https://orcid.org/0000-0003-0299-5825>),
Robrecht Cannoodt [ctb] (<https://orcid.org/0000-0003-3641-729X>),
Michał Krassowski [ctb] (<https://orcid.org/0000-0002-9638-7785>),
Michael Chirico [ctb] (<https://orcid.org/0000-0003-0787-087X>),
Pedro Aphalo [ctb] (<https://orcid.org/0000-0003-3385-972X>)
Maintainer: Kamil Slowikowski <kslowikowski@gmail.com>
Diff between ggrepel versions 0.9.0 dated 2020-12-16 and 0.9.1 dated 2021-01-15
ggrepel-0.9.0/ggrepel/R/position-nudge2.R |only ggrepel-0.9.0/ggrepel/man/ggplot2-ggproto.Rd |only ggrepel-0.9.1/ggrepel/DESCRIPTION | 14 +- ggrepel-0.9.1/ggrepel/MD5 | 26 ++-- ggrepel-0.9.1/ggrepel/NAMESPACE | 2 ggrepel-0.9.1/ggrepel/NEWS.md | 25 ++++ ggrepel-0.9.1/ggrepel/R/geom-label-repel.R | 28 ++--- ggrepel-0.9.1/ggrepel/R/geom-text-repel.R | 11 +- ggrepel-0.9.1/ggrepel/R/position-nudge-repel.R |only ggrepel-0.9.1/ggrepel/README.md | 10 - ggrepel-0.9.1/ggrepel/inst/doc/ggrepel.html | 4 ggrepel-0.9.1/ggrepel/man/geom_text_repel.Rd | 5 ggrepel-0.9.1/ggrepel/man/ggrepel-ggproto.Rd |only ggrepel-0.9.1/ggrepel/man/ggrepel.Rd | 2 ggrepel-0.9.1/ggrepel/man/position_nudge_repel.Rd |only ggrepel-0.9.1/ggrepel/src/repel_boxes.cpp | 69 +++++++++---- ggrepel-0.9.1/ggrepel/tests/testthat/test-lots-of-points.R |only 17 files changed, 131 insertions(+), 65 deletions(-)
Title: Multiple Pairwise Comparison Tests
Description: Multiple pairwise comparison tests on tidy data for
one-way analysis of variance for both between-subjects and
within-subjects designs. Currently, it supports only the most common
types of statistical analyses and tests: parametric (Welch's and
Student's t-test), nonparametric (Durbin-Conover and Dunn test),
robust (Yuen’s trimmed means test), and Bayes Factor (Student's
t-test).
Author: Indrajeet Patil [cre, aut, cph]
(<https://orcid.org/0000-0003-1995-6531>, @patilindrajeets)
Maintainer: Indrajeet Patil <patilindrajeet.science@gmail.com>
Diff between pairwiseComparisons versions 3.1.1 dated 2020-12-03 and 3.1.2 dated 2021-01-15
DESCRIPTION | 11 MD5 | 35 +- NAMESPACE | 8 NEWS.md | 4 R/global_vars.R | 7 R/helpers.R | 59 ++-- R/pairwise_comparisons.R | 147 ++++------- README.md | 273 +++++++++++---------- build |only man/figures/README-ggsignif2-1.png |binary man/figures/lifecycle-archived.svg |only man/figures/lifecycle-defunct.svg |only man/figures/lifecycle-deprecated.svg |only man/figures/lifecycle-experimental.svg |only man/figures/lifecycle-maturing.svg |only man/figures/lifecycle-questioning.svg |only man/figures/lifecycle-stable.svg |only man/figures/lifecycle-superseded.svg |only man/p_adjust_text.Rd | 4 man/pairwise_caption.Rd | 10 man/pairwise_comparisons.Rd | 7 tests/testthat/test-pairwise_comparisons_between.R | 130 +++++----- tests/testthat/test-pairwise_comparisons_within.R | 140 +++++----- 23 files changed, 425 insertions(+), 410 deletions(-)
More information about pairwiseComparisons at CRAN
Permanent link
Title: Bayesian Inference from the Conditional Genetic Stock
Identification Model
Description: Implements Bayesian inference for the conditional genetic
stock identification model. It allows inference of mixed fisheries and also
simulation of mixtures to predict accuracy. A full description of the underlying
methods is available in a recently published article in the
Canadian Journal of Fisheries and Aquatic Sciences: <doi:10.1139/cjfas-2018-0016>.
Author: Eric C. Anderson [aut, cre],
Ben Moran [aut]
Maintainer: Eric C. Anderson <eric.anderson@noaa.gov>
Diff between rubias versions 0.3.1 dated 2020-04-02 and 0.3.2 dated 2021-01-15
DESCRIPTION | 10 MD5 | 44 - NEWS.md | 8 R/data.R | 12 R/self_assign.R | 2 README.md | 364 ++++++----- build/vignette.rds |binary inst/doc/rubias-fully-bayesian.html | 236 ++++--- inst/doc/rubias-overview.Rmd | 2 inst/doc/rubias-overview.html | 780 ++++++++++++------------ inst/doc/rubias-underlying-data-structures.html | 118 ++- man/alewife.Rd | 2 man/blueback.Rd | 2 man/chinook.Rd | 4 man/small_chinook_ref.Rd | 4 tools/boxplot-pofz-gc-sim-1.png |binary tools/boxplot-pofz-indiv-sim-1.png |binary tools/plot-6-1.png |binary tools/plot-top6-1.png |binary tools/plot-top6-n-1.png |binary tools/unnamed-chunk-6-1.png |binary tools/z-score-density-1.png |binary vignettes/rubias-overview.Rmd | 2 23 files changed, 856 insertions(+), 734 deletions(-)
Title: Calculate Pairwise Multiple Comparisons of Mean Rank Sums
Extended
Description: For one-way layout experiments the one-way ANOVA can
be performed as an omnibus test. All-pairs multiple comparisons
tests (Tukey-Kramer test, Scheffe test, LSD-test)
and many-to-one tests (Dunnett test) for normally distributed
residuals and equal within variance are available. Furthermore,
all-pairs tests (Games-Howell test, Tamhane's T2 test,
Dunnett T3 test, Ury-Wiggins-Hochberg test) and many-to-one
(Tamhane-Dunnett Test) for normally distributed residuals
and heterogeneous variances are provided. Van der Waerden's normal
scores test for omnibus, all-pairs and many-to-one tests is
provided for non-normally distributed residuals and homogeneous
variances. The Kruskal-Wallis, BWS and Anderson-Darling
omnibus test and all-pairs tests
(Nemenyi test, Dunn test, Conover test, Dwass-Steele-Critchlow-
Fligner test) as well as many-to-one (Nemenyi test, Dunn test,
U-test) are given for the analysis of variance by ranks.
Non-parametric trend tests (Jonckheere test, Cuzick test,
Johnson-Mehrotra test, Spearman test) are included.
In addition, a Friedman-test for one-way ANOVA with repeated
measures on ranks (CRBD) and Skillings-Mack test for unbalanced
CRBD is provided with consequent all-pairs tests (Nemenyi test,
Siegel test, Miller test, Conover test, Exact test)
and many-to-one tests (Nemenyi test, Demsar test, Exact test).
A trend can be tested with Pages's test. Durbin's test
for a two-way balanced incomplete block design (BIBD) is given
in this package as well as Gore's test for CRBD with multiple
observations per cell is given. Outlier tests, Mandel's k- and
h statistic as well as functions for Type I error and Power
analysis as well as generic summary, print and plot methods
are provided.
Author: Thorsten Pohlert [aut, cre] (<https://orcid.org/0000-0003-3855-3025>)
Maintainer: Thorsten Pohlert <thorsten.pohlert@gmx.de>
Diff between PMCMRplus versions 1.7.1 dated 2020-11-30 and 1.9.0 dated 2021-01-15
DESCRIPTION | 11 +++--- MD5 | 68 +++++++++++++++++++++----------------- NAMESPACE | 13 +++++++ R/Cochran.R | 2 - R/Dgrubbs.R | 2 - R/Grubbs.R | 2 - R/NPMTest.R | 67 +++++++++++++++++++++++++++---------- R/hayterStoneTest.R | 31 ++++++++++++++--- R/hsAllPairsTest.R | 61 +++++++++++++++++++++++----------- R/mrrTest.R |only R/pHS.R |only R/print.osrt.R | 8 +++- R/shanTest.R |only R/steelsKSampleTest.R |only R/stepDownTrendTest.R | 2 - R/sysdata.rda |binary build/partial.rdb |only inst/NEWS.Rd | 21 +++++++++++ inst/doc/QuickReferenceGuide.html | 44 +----------------------- man/Cochran.Rd | 2 - man/Dgrubbs.Rd | 2 - man/Grubbs.Rd | 2 - man/NPMTest.Rd | 19 +++++++++- man/bwsTrendTest.Rd | 3 + man/chackoTest.Rd | 3 + man/cochranTest.Rd | 2 - man/cuzickTest.Rd | 3 + man/doubleGrubbsTest.Rd | 2 - man/flignerWolfeTest.Rd | 3 + man/grubbsTest.Rd | 2 - man/hayterStoneTest.Rd | 23 ++++++++++-- man/hsAllPairsTest.Rd | 21 +++++++++-- man/johnsonTest.Rd | 3 + man/jonckheereTest.Rd | 3 + man/leTest.Rd | 3 + man/mrrTest.Rd |only man/shanTest.Rd |only man/spearmanTest.Rd | 3 + man/steelsKSampleTest.Rd |only 39 files changed, 293 insertions(+), 138 deletions(-)
Title: Simple Fisheries Stock Assessment Methods
Description: A variety of simple fish stock assessment methods.
Detailed vignettes are available on the fishR website <http://derekogle.com/fishR/>.
Author: Derek Ogle [aut, cre] (<https://orcid.org/0000-0002-0370-9299>),
Powell Wheeler [aut],
Alexis Dinno [aut] (Provided base functionality of dunnTest())
Maintainer: Derek Ogle <derek@derekogle.com>
Diff between FSA versions 0.8.31 dated 2020-11-08 and 0.8.32 dated 2021-01-15
DESCRIPTION | 11 +-- MD5 | 42 ++++++------ NEWS.md | 14 ++++ R/alkPlot.R | 14 +--- R/bootstrap.R | 25 ++++--- R/fitPlot.R | 137 +++++++++++++++++----------------------- R/hist.formula.R | 45 ++----------- R/lwCompPreds.R | 35 ++-------- R/plotBinResp.R | 25 +------ R/psdAdd.R | 70 ++++++++++++-------- R/psdPlot.R | 39 +---------- R/residPlot.R | 143 +++++++++++++++++------------------------- man/alkPlot.Rd | 14 +--- man/bootCase.Rd | 25 ++++--- man/fitPlot.Rd | 88 +++++++++---------------- man/hist.formula.Rd | 33 --------- man/lwCompPreds.Rd | 32 +-------- man/plotBinResp.Rd | 25 +------ man/psdAdd.Rd | 2 man/psdPlot.Rd | 37 +--------- man/residPlot.Rd | 112 +++++++++++--------------------- tests/testthat/testthat_PSD.R | 41 ++++++++++++ 22 files changed, 393 insertions(+), 616 deletions(-)
Title: An Interface for Content-Based Identifiers
Description: An interface for creating, registering, and resolving content-based
identifiers for data management. Content-based identifiers rely on
the 'cryptographic' hashes to refer to the files they identify, thus,
anyone possessing the file can compute the identifier using a
well-known standard algorithm, such as 'SHA256'. By registering
a URL at which the content is accessible to a public archive, such
as <https://hash-archive.org>, the content identifier can serve
many functions typically associated with A Digital Object Identifier
('DOI'). Unlike location-based identifiers like 'DOIs', content-based
identifiers permit the same content to be registered in many locations.
Author: Carl Boettiger [aut, cre] (<https://orcid.org/0000-0002-1642-628X>),
Jorrit Poelen [aut] (<https://orcid.org/0000-0003-3138-4118>),
NSF OAC 1839201 [fnd]
(https://www.nsf.gov/awardsearch/showAward?AWD_ID=1839201)
Maintainer: Carl Boettiger <cboettig@gmail.com>
Diff between contentid versions 0.0.8 dated 2020-09-25 and 0.0.9 dated 2021-01-15
DESCRIPTION | 10 +++++----- MD5 | 16 ++++++++-------- NAMESPACE | 1 - NEWS.md | 4 ++++ R/content_dir.R | 5 ++--- build/vignette.rds |binary inst/doc/intro.html | 12 +++++++++++- man/content_dir.Rd | 6 ++---- tests/testthat/test-lmdb_registry.R | 3 +++ 9 files changed, 35 insertions(+), 22 deletions(-)
Title: Full Pattern Summation of X-Ray Powder Diffraction Data
Description: Full pattern summation of X-ray powder diffraction data as
described in Chipera and Bish (2002) <doi:10.1107/S0021889802017405>.
Derives quantitative estimates of crystalline and amorphous phase
concentrations in complex mixtures.
Author: Benjamin Butler [aut, cre],
Stephen Hillier [aut],
Dylan Beaudette [ctb],
Dennis Eberl [ctb]
Maintainer: Benjamin Butler <benjamin.butler@hutton.ac.uk>
Diff between powdR versions 1.2.4 dated 2020-11-16 and 1.2.5 dated 2021-01-15
DESCRIPTION | 10 +++--- MD5 | 29 +++++++++-------- NEWS.md | 13 +++++++ R/afps.R | 71 +++++++++++++++++++++++++++++-------------- R/data.R | 7 +++- R/fps.R | 69 +++++++++++++++++++++++++++-------------- R/summarise_mineralogy.R | 58 ++++++++++++++++++++++++++++++++--- build/vignette.rds |binary inst/CITATION |only inst/doc/powdR_vignette.html | 4 +- man/afps.Rd | 2 - man/afps.powdRlib.Rd | 2 - man/fps.Rd | 2 - man/fps.powdRlib.Rd | 2 - man/rockjock.Rd | 7 +++- man/summarise_mineralogy.Rd | 12 ++++++- 16 files changed, 206 insertions(+), 82 deletions(-)
Title: Interface to 'Azure Resource Manager'
Description: A lightweight but powerful R interface to the 'Azure Resource Manager' REST API. The package exposes a comprehensive class framework and related tools for creating, updating and deleting 'Azure' resource groups, resources and templates. While 'AzureRMR' can be used to manage any 'Azure' service, it can also be extended by other packages to provide extra functionality for specific services. Part of the 'AzureR' family of packages.
Author: Hong Ooi [aut, cre],
Microsoft [cph]
Maintainer: Hong Ooi <hongooi73@gmail.com>
Diff between AzureRMR versions 2.3.6 dated 2020-10-14 and 2.4.0 dated 2021-01-15
AzureRMR-2.3.6/AzureRMR/R/format.R |only AzureRMR-2.3.6/AzureRMR/man/format.Rd |only AzureRMR-2.4.0/AzureRMR/DESCRIPTION | 8 AzureRMR-2.4.0/AzureRMR/LICENSE | 2 AzureRMR-2.4.0/AzureRMR/MD5 | 47 +- AzureRMR-2.4.0/AzureRMR/NAMESPACE | 1 AzureRMR-2.4.0/AzureRMR/NEWS.md | 7 AzureRMR-2.4.0/AzureRMR/R/AzureRMR.R | 13 AzureRMR-2.4.0/AzureRMR/R/az_login.R | 16 AzureRMR-2.4.0/AzureRMR/R/az_resource.R | 48 ++ AzureRMR-2.4.0/AzureRMR/R/az_rm.R | 12 AzureRMR-2.4.0/AzureRMR/R/make_graph_login.R | 4 AzureRMR-2.4.0/AzureRMR/R/utils.R | 43 -- AzureRMR-2.4.0/AzureRMR/man/az_resource.Rd | 20 - AzureRMR-2.4.0/AzureRMR/man/az_rm.Rd | 2 AzureRMR-2.4.0/AzureRMR/man/azure_login.Rd | 219 +++++------ AzureRMR-2.4.0/AzureRMR/man/call_azure.Rd | 108 ++--- AzureRMR-2.4.0/AzureRMR/man/info.Rd | 70 +-- AzureRMR-2.4.0/AzureRMR/man/lock.Rd | 156 +++---- AzureRMR-2.4.0/AzureRMR/man/pool.Rd | 166 ++++---- AzureRMR-2.4.0/AzureRMR/man/rbac.Rd | 188 ++++----- AzureRMR-2.4.0/AzureRMR/man/reexports.Rd | 52 +- AzureRMR-2.4.0/AzureRMR/man/utils.Rd | 78 +-- AzureRMR-2.4.0/AzureRMR/tests/testthat/test01_auth.R | 11 AzureRMR-2.4.0/AzureRMR/tests/testthat/test02_sub.R | 6 AzureRMR-2.4.0/AzureRMR/tests/testthat/test04a_subresource.R |only 26 files changed, 672 insertions(+), 605 deletions(-)
Title: Dashboard with Fomantic UI Support for Shiny
Description: It offers functions for creating dashboard with Semantic elements.
Author: Filip Stachura [aut],
Dominik Krzeminski [cre],
Krystian Igras [aut],
Michał Maj [ctb],
Michał Drzazga [ctb],
Appsilon [cph]
Maintainer: Dominik Krzeminski <dominik@appsilon.com>
Diff between semantic.dashboard versions 0.1.8 dated 2020-10-19 and 0.2.0 dated 2021-01-15
semantic.dashboard-0.1.8/semantic.dashboard/R/value_box_output.R |only semantic.dashboard-0.1.8/semantic.dashboard/inst/compare.png |only semantic.dashboard-0.1.8/semantic.dashboard/inst/themes.png |only semantic.dashboard-0.1.8/semantic.dashboard/tests/testthat/test-verify_value_allowed.R |only semantic.dashboard-0.2.0/semantic.dashboard/DESCRIPTION | 16 - semantic.dashboard-0.2.0/semantic.dashboard/MD5 | 59 ++-- semantic.dashboard-0.2.0/semantic.dashboard/NAMESPACE | 1 semantic.dashboard-0.2.0/semantic.dashboard/R/box.R | 7 semantic.dashboard-0.2.0/semantic.dashboard/R/deps.R | 7 semantic.dashboard-0.2.0/semantic.dashboard/R/dropdown_menu.R | 8 semantic.dashboard-0.2.0/semantic.dashboard/R/semantic_dashboard.R | 138 +++++++--- semantic.dashboard-0.2.0/semantic.dashboard/R/tab.R | 13 semantic.dashboard-0.2.0/semantic.dashboard/R/tab_box.R | 7 semantic.dashboard-0.2.0/semantic.dashboard/R/value_box.R | 77 +++++ semantic.dashboard-0.2.0/semantic.dashboard/inst/semantic.dashboard.css |only semantic.dashboard-0.2.0/semantic.dashboard/inst/semantic.dashboard.js | 88 +++--- semantic.dashboard-0.2.0/semantic.dashboard/inst/semantic.dashboard.min.css |only semantic.dashboard-0.2.0/semantic.dashboard/inst/semantic.dashboard.min.js | 2 semantic.dashboard-0.2.0/semantic.dashboard/man/box.Rd | 7 semantic.dashboard-0.2.0/semantic.dashboard/man/dashboard_body.Rd | 6 semantic.dashboard-0.2.0/semantic.dashboard/man/dashboard_header.Rd | 43 ++- semantic.dashboard-0.2.0/semantic.dashboard/man/dashboard_page.Rd | 22 + semantic.dashboard-0.2.0/semantic.dashboard/man/dashboard_sidebar.Rd | 17 + semantic.dashboard-0.2.0/semantic.dashboard/man/figures |only semantic.dashboard-0.2.0/semantic.dashboard/man/notification_item.Rd | 4 semantic.dashboard-0.2.0/semantic.dashboard/man/render_value_box.Rd | 9 semantic.dashboard-0.2.0/semantic.dashboard/man/tab_box.Rd | 7 semantic.dashboard-0.2.0/semantic.dashboard/man/tab_item.Rd | 10 semantic.dashboard-0.2.0/semantic.dashboard/man/task_item.Rd | 4 semantic.dashboard-0.2.0/semantic.dashboard/man/value_box.Rd | 10 semantic.dashboard-0.2.0/semantic.dashboard/man/value_box_output.Rd | 6 semantic.dashboard-0.2.0/semantic.dashboard/tests/testthat/test-dropdown_menu.R |only semantic.dashboard-0.2.0/semantic.dashboard/tests/testthat/test-lintr.R | 23 - semantic.dashboard-0.2.0/semantic.dashboard/tests/testthat/test-utils.R |only semantic.dashboard-0.2.0/semantic.dashboard/tests/testthat/test-value_box.R |only 35 files changed, 413 insertions(+), 178 deletions(-)
More information about semantic.dashboard at CRAN
Permanent link
Title: Linear Test Statistics for Permutation Inference
Description: Basic infrastructure for linear test statistics and permutation
inference in the framework of Strasser and Weber (1999) <https://epub.wu.ac.at/102/>.
This package must not be used by end-users. CRAN package 'coin' implements all
user interfaces and is ready to be used by anyone.
Author: Torsten Hothorn [aut, cre]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between libcoin versions 1.0-6 dated 2020-08-14 and 1.0-7 dated 2021-01-15
DESCRIPTION | 8 MD5 | 38 ++-- R/AAA.R | 2 R/ctabs.R | 2 R/libcoin.R | 2 build/vignette.rds |binary inst/NEWS.Rd | 7 inst/doc/libcoin.Rnw | 346 ++++++++++++++++++++-------------------- inst/doc/libcoin.pdf |binary inst/include/libcoin.h | 2 inst/include/libcoinAPI.h | 2 inst/include/libcoin_internal.h | 2 src/libcoin-init.c | 2 src/libcoin.c | 32 +-- src/libcoin.h | 2 src/libcoinAPI.h | 2 src/libcoin_internal.h | 2 tests/regtest_libcoin.R | 4 tests/regtest_libcoin.Rout.save | 18 +- vignettes/libcoin.Rnw | 346 ++++++++++++++++++++-------------------- 20 files changed, 413 insertions(+), 406 deletions(-)
Title: Simple Data Frames
Description: Provides a 'tbl_df' class (the 'tibble') that
provides stricter checking and better formatting than the traditional
data frame.
Author: Kirill Müller [aut, cre],
Hadley Wickham [aut],
Romain Francois [ctb],
Jennifer Bryan [ctb],
RStudio [cph]
Maintainer: Kirill Müller <krlmlr+r@mailbox.org>
Diff between tibble versions 3.0.4 dated 2020-10-12 and 3.0.5 dated 2021-01-15
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Title: Extract, Visualize and Analyze Cricket Statistics from
ESPNCricinfo's Statsguru
Description: Use this package to scrap Test Matches, One Day Internationals, Twenty-20 Internationals data of a player from ESPNCricinfo's Statsguru (<http://stats.espncricinfo.com/ci/engine/stats/index.html>) and then visualize their batting, bowling and fielding performances in the form of charts and graphs.
Author: Pranav Nagarajan
Maintainer: Pranav Nagarajan <npranav10@gmail.com>
Diff between statsguRu versions 0.1.0 dated 2019-05-17 and 0.1.1 dated 2021-01-15
DESCRIPTION | 11 ++- MD5 | 46 ++++++++++----- NAMESPACE | 34 ++++++++++- R/batting.R | 92 +++++++++++++++++++++++++++---- R/bowlDismissal.R |only R/bowling.R |only R/dismissal.r | 2 README.md | 2 man/dispBatsmanDismissals.Rd | 44 +++++++------- man/dispBatsmanDismissalsByBowlerType.Rd | 44 +++++++------- man/dispBattingAveByContinent.Rd | 44 +++++++------- man/dispBattingAveByHostCountry.Rd | 44 +++++++------- man/dispBattingAveByOpposition.Rd | 44 +++++++------- man/dispBattingAveByPosPlayed.Rd | 44 +++++++------- man/dispBattingAveByYears.Rd | 44 +++++++------- man/dispBattingAveSRByOpposition.Rd |only man/dispBowlerDismissals.Rd |only man/dispBowlingAveByYears.Rd |only man/dispBowlingAveEconByOpposition.Rd |only man/dispBowlingERByYears.Rd |only man/dispWktsTakenAtHostCountry.Rd |only man/dispWktsTakenByOpposition.Rd |only man/getBattingSummary.Rd | 44 +++++++------- man/getBowlingSummary.Rd |only man/getDismissalSummary.Rd | 44 +++++++------- man/getOverallBattingSummary.Rd |only man/getWicketsSummary.Rd |only man/splitBattingSummary.Rd | 54 +++++++++--------- man/splitBowlingSummary.Rd |only man/splitDismissalSummary.Rd | 42 +++++++------- man/splitWicketsSummary.Rd |only 31 files changed, 397 insertions(+), 282 deletions(-)
Title: Seamless R and C++ Integration
Description: The 'Rcpp' package provides R functions as well as C++ classes which
offer a seamless integration of R and C++. Many R data types and objects can be
mapped back and forth to C++ equivalents which facilitates both writing of new
code as well as easier integration of third-party libraries. Documentation
about 'Rcpp' is provided by several vignettes included in this package, via the
'Rcpp Gallery' site at <https://gallery.rcpp.org>, the paper by Eddelbuettel and
Francois (2011, <doi:10.18637/jss.v040.i08>), the book by Eddelbuettel (2013,
<doi:10.1007/978-1-4614-6868-4>) and the paper by Eddelbuettel and Balamuta (2018,
<doi:10.1080/00031305.2017.1375990>); see 'citation("Rcpp")' for details.
Author: Dirk Eddelbuettel, Romain Francois, JJ Allaire, Kevin Ushey, Qiang Kou,
Nathan Russell, Douglas Bates and John Chambers
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between Rcpp versions 1.0.5 dated 2020-07-06 and 1.0.6 dated 2021-01-15
ChangeLog | 102 +++++++++++++ DESCRIPTION | 10 - MD5 | 80 +++++----- R/Rcpp.package.skeleton.R | 2 README.md | 9 - build/vignette.rds |binary inst/CITATION | 25 +-- inst/NEWS.Rd | 34 ++++ inst/bib/Rcpp.bib | 97 ++++++------ inst/doc/Rcpp-FAQ.pdf |binary inst/doc/Rcpp-attributes.pdf |binary inst/doc/Rcpp-extending.pdf |binary inst/doc/Rcpp-introduction.pdf |binary inst/doc/Rcpp-jss-2011.pdf |binary inst/doc/Rcpp-libraries.pdf |binary inst/doc/Rcpp-modules.pdf |binary inst/doc/Rcpp-package.pdf |binary inst/doc/Rcpp-quickref.pdf |binary inst/doc/Rcpp-sugar.pdf |binary inst/include/Rcpp/DataFrame.h | 48 ++++++ inst/include/Rcpp/XPtr.h | 4 inst/include/Rcpp/config.h | 10 - inst/include/Rcpp/generated/InternalFunction__ctors.h | 141 ++++++++---------- inst/include/Rcpp/lang.h | 62 ------- inst/include/Rcpp/module/class.h | 10 - inst/tinytest/cpp/DataFrame.cpp | 98 ++++++++++++ inst/tinytest/test_dataframe.R | 43 +++++ man/Rcpp-package.Rd | 24 +-- src/api.cpp | 2 src/attributes.cpp | 2 src/module.cpp | 2 vignettes/pdf/Rcpp-FAQ.pdf |binary vignettes/pdf/Rcpp-attributes.pdf |binary vignettes/pdf/Rcpp-extending.pdf |binary vignettes/pdf/Rcpp-introduction.pdf |binary vignettes/pdf/Rcpp-jss-2011.pdf |binary vignettes/pdf/Rcpp-libraries.pdf |binary vignettes/pdf/Rcpp-modules.pdf |binary vignettes/pdf/Rcpp-package.pdf |binary vignettes/pdf/Rcpp-quickref.pdf |binary vignettes/pdf/Rcpp-sugar.pdf |binary 41 files changed, 534 insertions(+), 271 deletions(-)
Title: Processing of Model Parameters
Description: Utilities for processing the parameters of various
statistical models. Beyond computing p values, CIs, and other indices
for a wide variety of models (see support list of insight; Lüdecke,
Waggoner & Makowski (2019) <doi:10.21105/joss.01412>), this package
implements features like bootstrapping or simulating of parameters and
models, feature reduction (feature extraction and variable selection)
as well as functions to describe data and variable characteristics
(e.g. skewness, kurtosis, smoothness or distribution).
Author: Daniel Lüdecke [aut, cre] (<https://orcid.org/0000-0002-8895-3206>,
@strengejacke),
Dominique Makowski [aut] (<https://orcid.org/0000-0001-5375-9967>),
Mattan S. Ben-Shachar [aut] (<https://orcid.org/0000-0002-4287-4801>),
Indrajeet Patil [aut] (<https://orcid.org/0000-0003-1995-6531>,
@patilindrajeets),
Søren Højsgaard [aut],
Zen J. Lau [ctb],
Vincent Arel-Bundock [ctb] (<https://orcid.org/0000-0003-1995-6531>,
@vincentab)
Maintainer: Daniel Lüdecke <d.luedecke@uke.de>
Diff between parameters versions 0.10.1 dated 2020-12-08 and 0.11.0 dated 2021-01-15
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parameters-0.11.0/parameters/man/describe_distribution.Rd | 4 parameters-0.11.0/parameters/man/display.parameters_model.Rd | 59 parameters-0.11.0/parameters/man/get_scores.Rd | 23 parameters-0.11.0/parameters/man/model_parameters.BFBayesFactor.Rd | 29 parameters-0.11.0/parameters/man/model_parameters.Mclust.Rd | 2 parameters-0.11.0/parameters/man/model_parameters.Rd | 9 parameters-0.11.0/parameters/man/model_parameters.aov.Rd | 10 parameters-0.11.0/parameters/man/model_parameters.averaging.Rd | 3 parameters-0.11.0/parameters/man/model_parameters.befa.Rd | 2 parameters-0.11.0/parameters/man/model_parameters.cgam.Rd |only parameters-0.11.0/parameters/man/model_parameters.default.Rd | 33 parameters-0.11.0/parameters/man/model_parameters.glht.Rd | 18 parameters-0.11.0/parameters/man/model_parameters.htest.Rd | 22 parameters-0.11.0/parameters/man/model_parameters.kmeans.Rd | 2 parameters-0.11.0/parameters/man/model_parameters.lavaan.Rd | 2 parameters-0.11.0/parameters/man/model_parameters.merMod.Rd | 54 parameters-0.11.0/parameters/man/model_parameters.mira.Rd | 2 parameters-0.11.0/parameters/man/model_parameters.mlm.Rd | 23 parameters-0.11.0/parameters/man/model_parameters.principal.Rd | 3 parameters-0.11.0/parameters/man/model_parameters.rma.Rd | 2 parameters-0.11.0/parameters/man/model_parameters.stanreg.Rd | 41 parameters-0.11.0/parameters/man/model_parameters.t1way.Rd |only parameters-0.11.0/parameters/man/model_parameters.zcpglm.Rd |only parameters-0.11.0/parameters/man/p_value.BFBayesFactor.Rd |only parameters-0.11.0/parameters/man/p_value.DirichletRegModel.Rd | 64 parameters-0.11.0/parameters/man/p_value.Rd | 7 parameters-0.11.0/parameters/man/p_value.lmerMod.Rd | 16 parameters-0.11.0/parameters/man/p_value.poissonmfx.Rd | 2 parameters-0.11.0/parameters/man/p_value.zcpglm.Rd |only parameters-0.11.0/parameters/man/p_value_betwithin.Rd | 2 parameters-0.11.0/parameters/man/p_value_kenward.Rd | 2 parameters-0.11.0/parameters/man/p_value_ml1.Rd | 2 parameters-0.11.0/parameters/man/p_value_satterthwaite.Rd | 2 parameters-0.11.0/parameters/man/reexports.Rd | 15 parameters-0.11.0/parameters/man/simulate_model.Rd | 2 parameters-0.11.0/parameters/man/simulate_parameters.Rd | 18 parameters-0.11.0/parameters/man/standard_error.Rd | 90 parameters-0.11.0/parameters/tests/testthat/test-MCMCglmm.R | 6 parameters-0.11.0/parameters/tests/testthat/test-PMCMRplus.R |only parameters-0.11.0/parameters/tests/testthat/test-glmer.R | 8 parameters-0.11.0/parameters/tests/testthat/test-model_parameters.BFBayesFactor.R | 15 parameters-0.11.0/parameters/tests/testthat/test-model_parameters.afex_aov.R | 14 parameters-0.11.0/parameters/tests/testthat/test-model_parameters.anova.R |only parameters-0.11.0/parameters/tests/testthat/test-model_parameters.aov.R | 4 parameters-0.11.0/parameters/tests/testthat/test-model_parameters.aov_es_ci.R | 118 parameters-0.11.0/parameters/tests/testthat/test-model_parameters.efa_cfa.R | 28 parameters-0.11.0/parameters/tests/testthat/test-model_parameters.glm.R | 2 parameters-0.11.0/parameters/tests/testthat/test-model_parameters.htest.R | 33 parameters-0.11.0/parameters/tests/testthat/test-model_parameters.metaBMA.R | 70 parameters-0.11.0/parameters/tests/testthat/test-model_parameters.metafor.R | 2 parameters-0.11.0/parameters/tests/testthat/test-model_parameters.mle2.R | 2 parameters-0.11.0/parameters/tests/testthat/test-parameters_table.R | 26 parameters-0.11.0/parameters/tests/testthat/test-plm.R | 3 parameters-0.11.0/parameters/tests/testthat/test-quantreg.R | 22 parameters-0.11.0/parameters/tests/testthat/test-rstanarm.R | 11 parameters-0.11.0/parameters/tests/testthat/test-wrs2.R |only parameters-0.11.0/parameters/vignettes/model_parameters_formatting.Rmd | 32 249 files changed, 2935 insertions(+), 1453 deletions(-)
Title: Estimating Fixed Effects Individual Slope Models
Description: Provides the function feis() to estimate fixed effects individual
slope (FEIS) models. The FEIS model constitutes a more general version of
the often-used fixed effects (FE) panel model, as implemented in the
package 'plm' by Croissant and Millo (2008) <doi:10.18637/jss.v027.i02>.
In FEIS models, data are not only person demeaned like in conventional
FE models, but detrended by the predicted individual slope of each
person or group. Estimation is performed by applying least squares lm()
to the transformed data. For more details on FEIS models see Bruederl and
Ludwig (2015, ISBN:1446252442); Frees (2001) <doi:10.2307/3316008>;
Polachek and Kim (1994) <doi:10.1016/0304-4076(94)90075-2>;
Ruettenauer and Ludwig (2020) <doi:10.1177/0049124120926211>;
Wooldridge (2010, ISBN:0262294354). To test consistency of conventional FE
and random effects estimators against heterogeneous slopes, the package
also provides the functions feistest() for an artificial regression test
and bsfeistest() for a bootstrapped version of the Hausman test.
Author: Tobias Ruettenauer [aut, cre] (<https://orcid.org/0000-0001-5747-9735>),
Volker Ludwig [aut] (<https://orcid.org/0000-0003-3118-3172>)
Maintainer: Tobias Ruettenauer <ruettenauer@sowi.uni-kl.de>
Diff between feisr versions 1.1.3 dated 2021-01-11 and 1.1.4 dated 2021-01-15
DESCRIPTION | 6 +++--- MD5 | 16 ++++++++-------- NEWS.md | 4 ++++ R/feis.R | 4 ++-- R/utility_functions.R | 6 +++--- README.md | 28 ++++++++++++++++++++-------- build/partial.rdb |binary inst/doc/feisr-vignette.html | 4 ++-- tests/testthat/test_CollinearityHandling.R | 7 ++++++- 9 files changed, 48 insertions(+), 27 deletions(-)
Title: Fundamental Clustering Problems Suite
Description: Over fifty conventional clustering algorithms are provided in this package with consistent input and output, which enables the user to try out algorithms swiftly. Additionally, 26 statistical approaches for the estimation of the number of clusters as well as the mirrored density plot (MD-plot) of clusterability are implemented. The packages is published in Thrun, M.C., Stier Q.: "Fundamental Clustering Algorithms Suite" (2021), SoftwareX, <DOI:10.1016/j.softx.2020.100642>. Moreover, the fundamental clustering problems suite (FCPS) offers a variety of clustering challenges any algorithm should handle when facing real world data, see Thrun, M.C., Ultsch A.: "Clustering Benchmark Datasets Exploiting the Fundamental Clustering Problems" (2020), Data in Brief, <DOI:10.1016/j.dib.2020.105501>.
Author: Michael Thrun [aut, cre, cph] (<https://orcid.org/0000-0001-9542-5543>),
Peter Nahrgang [ctr, ctb],
Felix Pape [ctr, ctb],
Vasyl Pihur [ctb],
Guy Brock [ctb],
Susmita Datta [ctb],
Somnath Datta [ctb],
Luis Winckelmann [com],
Alfred Ultsch [dtc, ctb],
Quirin Stier [ctb, rev]
Maintainer: Michael Thrun <m.thrun@gmx.net>
Diff between FCPS versions 1.2.6 dated 2020-12-11 and 1.2.7 dated 2021-01-15
FCPS-1.2.6/FCPS/R/DBSCAN.R |only FCPS-1.2.6/FCPS/man/DBSCAN.Rd |only FCPS-1.2.7/FCPS/DESCRIPTION | 10 FCPS-1.2.7/FCPS/MD5 | 75 FCPS-1.2.7/FCPS/NAMESPACE | 1 FCPS-1.2.7/FCPS/R/ADPclustering.R | 14 FCPS-1.2.7/FCPS/R/APclustering.R | 138 FCPS-1.2.7/FCPS/R/ClusterEqualWeighting.R |only FCPS-1.2.7/FCPS/R/DBscan.R |only FCPS-1.2.7/FCPS/R/DatabionicSwarmClustering.R | 277 FCPS-1.2.7/FCPS/R/DivisiveAnalysisClustering.R | 136 FCPS-1.2.7/FCPS/R/GenieClustering.R | 126 FCPS-1.2.7/FCPS/R/MinimalEnergyClustering.R | 145 FCPS-1.2.7/FCPS/R/MinimaxLinkageClustering.R | 128 FCPS-1.2.7/FCPS/README.md |only FCPS-1.2.7/FCPS/build/partial.rdb |binary FCPS-1.2.7/FCPS/build/vignette.rds |binary FCPS-1.2.7/FCPS/inst/doc/FCPS.R | 208 FCPS-1.2.7/FCPS/inst/doc/FCPS.Rmd | 2 FCPS-1.2.7/FCPS/inst/doc/FCPS.html | 4813 ++++++-------- FCPS-1.2.7/FCPS/man/APclustering.Rd | 156 FCPS-1.2.7/FCPS/man/Atom.Rd | 2 FCPS-1.2.7/FCPS/man/Chainlink.Rd | 2 FCPS-1.2.7/FCPS/man/ClusterEqualWeighting.Rd |only FCPS-1.2.7/FCPS/man/ClusterNoEstimation.Rd | 22 FCPS-1.2.7/FCPS/man/ClusterPlotMDS.Rd | 182 FCPS-1.2.7/FCPS/man/ClusterabilityMDplot.Rd | 4 FCPS-1.2.7/FCPS/man/DBscan.Rd |only FCPS-1.2.7/FCPS/man/DatabionicSwarmClustering.Rd | 278 FCPS-1.2.7/FCPS/man/EngyTime.Rd | 2 FCPS-1.2.7/FCPS/man/FCPS-package.Rd | 7 FCPS-1.2.7/FCPS/man/GolfBall.Rd | 2 FCPS-1.2.7/FCPS/man/Hepta.Rd | 2 FCPS-1.2.7/FCPS/man/Leukemia.Rd | 4 FCPS-1.2.7/FCPS/man/Lsun3D.Rd | 4 FCPS-1.2.7/FCPS/man/MoGclustering.Rd | 2 FCPS-1.2.7/FCPS/man/PenalizedRegressionBasedClustering.Rd | 2 FCPS-1.2.7/FCPS/man/Target.Rd | 2 FCPS-1.2.7/FCPS/man/Tetra.Rd | 2 FCPS-1.2.7/FCPS/man/TwoDiamonds.Rd | 2 FCPS-1.2.7/FCPS/man/WingNut.Rd | 2 FCPS-1.2.7/FCPS/vignettes/FCPS.Rmd | 2 42 files changed, 3389 insertions(+), 3365 deletions(-)
Title: A Grammar of Data Manipulation
Description: A fast, consistent tool for working with data frame
like objects, both in memory and out of memory.
Author: Hadley Wickham [aut, cre] (<https://orcid.org/0000-0003-4757-117X>),
Romain François [aut] (<https://orcid.org/0000-0002-2444-4226>),
Lionel Henry [aut],
Kirill Müller [aut] (<https://orcid.org/0000-0002-1416-3412>),
RStudio [cph, fnd]
Maintainer: Hadley Wickham <hadley@rstudio.com>
Diff between dplyr versions 1.0.2 dated 2020-08-18 and 1.0.3 dated 2021-01-15
DESCRIPTION | 17 - MD5 | 205 ++++++------- NAMESPACE | 15 - NEWS.md | 41 ++ R/across.R | 69 ++-- R/arrange.R | 13 R/conditions.R | 8 R/context.R | 11 R/count-tally.R | 15 - R/data-mask.R | 184 ++++-------- R/data-starwars.R | 5 R/deprec-do.r | 10 R/deprec-lazyeval.R | 49 --- R/distinct.R | 2 R/doc-methods.R | 2 R/doc-params.R | 2 R/funs.R | 9 R/generics.R | 3 R/group-by.r | 17 - R/group_data.R | 9 R/grouped-df.r | 13 R/join.r | 8 R/lead-lag.R | 8 R/mutate.R | 38 +- R/na_if.R | 8 R/nth-value.R | 2 R/progress.R | 2 R/relocate.R | 16 - R/slice.R | 24 + R/summarise.R | 24 - R/zzz.r | 22 - README.md | 8 build/dplyr.pdf |binary build/vignette.rds |binary inst/doc/base.Rmd | 2 inst/doc/base.html | 95 +++--- inst/doc/colwise.R | 25 + inst/doc/colwise.Rmd | 42 ++ inst/doc/colwise.html | 360 +++++++++++++----------- inst/doc/compatibility.Rmd | 2 inst/doc/compatibility.html | 28 + inst/doc/dplyr.html | 28 + inst/doc/grouping.html | 53 ++- inst/doc/programming.Rmd | 2 inst/doc/programming.html | 90 +++--- inst/doc/rowwise.html | 83 +++-- inst/doc/two-table.html | 26 + inst/doc/window-functions.R | 4 inst/doc/window-functions.Rmd | 4 inst/doc/window-functions.html | 43 +- man/across.Rd | 49 +-- man/between.Rd | 2 man/c_across.Rd |only man/count.Rd | 9 man/dplyr_data_masking.Rd | 2 man/group_data.Rd | 7 man/mutate-joins.Rd | 18 - man/mutate.Rd | 4 man/na_if.Rd | 8 man/nest_join.Rd | 3 man/nth.Rd | 2 man/relocate.Rd | 3 man/select.Rd | 15 - man/starwars.Rd | 5 man/summarise.Rd | 8 src/chop.cpp |only src/dplyr.h | 101 ++++-- src/filter.cpp | 19 - src/group_by.cpp | 33 +- src/group_data.cpp | 17 - src/imports.cpp | 24 + src/init.cpp | 49 ++- src/mask.cpp |only src/mutate.cpp | 6 src/summarise.cpp | 8 tests/testthat/test-across.R | 46 ++- tests/testthat/test-arrange-errors.txt | 11 tests/testthat/test-count-tally.r | 1 tests/testthat/test-deprec-combine-errors.txt | 6 tests/testthat/test-deprec-dbi-errors.txt | 2 tests/testthat/test-deprec-funs-errors.txt | 24 + tests/testthat/test-deprec-lazyeval.R | 11 tests/testthat/test-deprec-src-local-errors.txt | 6 tests/testthat/test-distinct-errors.txt | 6 tests/testthat/test-distinct.R | 2 tests/testthat/test-funs.R | 5 tests/testthat/test-generics.R | 6 tests/testthat/test-group-by-errors.txt | 6 tests/testthat/test-group-by.r | 19 + tests/testthat/test-group_data.R | 19 + tests/testthat/test-join.r | 16 + tests/testthat/test-lead-lag-errors.txt | 3 tests/testthat/test-lead-lag.R | 6 tests/testthat/test-mutate-errors.txt | 6 tests/testthat/test-mutate.r | 69 ++++ tests/testthat/test-relocate.R | 16 + tests/testthat/test-slice-errors.txt | 8 tests/testthat/test-slice.r | 22 + tests/testthat/test-summarise-errors.txt | 15 - tests/testthat/test-summarise.r | 9 vignettes/base.Rmd | 2 vignettes/colwise.Rmd | 42 ++ vignettes/compatibility.Rmd | 2 vignettes/programming.Rmd | 2 vignettes/window-functions.Rmd | 4 105 files changed, 1584 insertions(+), 946 deletions(-)
Title: Spatial Generalised Linear Mixed Models for Areal Unit Data
Description: Implements a class of univariate and multivariate spatial generalised linear mixed models for areal unit data, with inference in a Bayesian setting using Markov chain Monte Carlo (MCMC) simulation. The response variable can be binomial, Gaussian, multinomial, Poisson or zero-inflated Poisson (ZIP), and spatial autocorrelation is modelled by a set of random effects that are assigned a conditional autoregressive (CAR) prior distribution. A number of different models are available for univariate spatial data, including models with no random effects as well as random effects modelled by different types of CAR prior, including the BYM model (Besag et al. (1991) <doi:10.1007/BF00116466>), the Leroux model (Leroux et al. (2000) <doi:10.1007/978-1-4612-1284-3_4>) and the localised model (Lee et al. (2015) <doi:10.1002/env.2348>). Additionally, a multivariate CAR (MCAR) model for multivariate spatial data is available, as is a two-level hierarchical model for modelling data relating to individuals within areas. Full details are given in the vignette accompanying this package. The initial creation of this package was supported by the Economic and Social Research Council (ESRC) grant RES-000-22-4256, and on-going development has been supported by the Engineering and Physical Science Research Council (EPSRC) grant EP/J017442/1, ESRC grant ES/K006460/1, Innovate UK / Natural Environment Research Council (NERC) grant NE/N007352/1 and the TB Alliance.
Author: Duncan Lee
Maintainer: Duncan Lee <Duncan.Lee@glasgow.ac.uk>
Diff between CARBayes versions 5.2 dated 2020-03-13 and 5.2.2 dated 2021-01-15
DESCRIPTION | 12 MD5 | 62 +- R/binomial.MVlerouxCAR.R | 17 R/binomial.bymCAR.R | 13 R/binomial.dissimilarityCAR.R | 11 R/binomial.glm.R | 9 R/binomial.lerouxCAR.R | 13 R/binomial.localisedCAR.R | 18 R/binomial.multilevelCAR.R | 15 R/common.functions.R | 116 ++-- R/gaussian.MVlerouxCAR.R | 11 R/gaussian.dissimilarityCAR.R | 7 R/gaussian.lerouxCAR.R | 787 ++++++++++++++++---------------- R/gaussian.multilevelCAR.R | 1001 ++++++++++++++++++++--------------------- R/multinomial.MVlerouxCAR.R | 1015 ++++++++++++++++++++---------------------- R/multinomial.glm.R | 9 R/poisson.MVlerouxCAR.R | 17 R/poisson.bymCAR.R | 13 R/poisson.dissimilarityCAR.R | 11 R/poisson.glm.R | 9 R/poisson.lerouxCAR.R | 13 R/poisson.localisedCAR.R | 18 R/poisson.multilevelCAR.R | 15 R/zip.bymCAR.R | 15 R/zip.glm.R | 11 R/zip.lerouxCAR.R | 15 build/vignette.rds |binary inst/CITATION | 38 - inst/doc/CARBayes.Rnw | 10 inst/doc/CARBayes.pdf |binary man/CARBayes-package.Rd | 4 vignettes/CARBayes.Rnw | 10 32 files changed, 1624 insertions(+), 1691 deletions(-)
Title: Computes Hydrograph Separation
Description: Computes hydrograph separation using the conceptual automated process from Pelletier and Andreassian (2020) <doi:10.5194/hess-24-1171-2020>. Contains scalar and vectorized functions to compute correlation criterion to calibrate the baseflow separation model.
Author: Antoine Pelletier [cre, aut] (<https://orcid.org/0000-0002-1286-9147>),
Vazken Andréassian [ths, rev] (<https://orcid.org/0000-0001-7124-9303>),
Olivier Delaigue [rev, ctb, dtc]
(<https://orcid.org/0000-0002-7668-8468>)
Maintainer: Antoine Pelletier <antoine.pelletier@inrae.fr>
Diff between baseflow versions 0.12.2 dated 2021-01-05 and 0.12.3 dated 2021-01-15
DESCRIPTION | 8 ++++---- INSTALL | 10 +++++----- MD5 | 16 ++++++++-------- README.md | 4 ++-- build/partial.rdb |binary src/Makevars | 5 +++-- src/Makevars.win | 5 +++-- src/rustlib/Cargo.toml | 2 +- tools/staticlib.R | 32 ++++++++++++++++++++++++++------ 9 files changed, 52 insertions(+), 30 deletions(-)
Title: Tables so Beautifully Fine-Tuned You Will Believe It's Magic
Description: The introduction of the 'broom' package has made converting model
objects into data frames as simple as a single function. While the 'broom'
package focuses on providing tidy data frames that can be used in advanced
analysis, it deliberately stops short of providing functionality for reporting
models in publication-ready tables. 'pixiedust' provides this functionality with
a programming interface intended to be similar to 'ggplot2's system of layers
with fine tuned control over each cell of the table. Options for output include
printing to the console and to the common markdown formats (markdown, HTML, and
LaTeX). With a little 'pixiedust' (and happy thoughts) tables can really fly.
Author: Benjamin Nutter [aut, cre],
David Kretch [ctb]
Maintainer: Benjamin Nutter <benjamin.nutter@gmail.com>
Diff between pixiedust versions 0.9.0 dated 2020-05-15 and 0.9.1 dated 2021-01-15
DESCRIPTION | 8 MD5 | 372 - NAMESPACE | 272 NEWS | 730 +- R/as.data.frame.dust.R | 224 R/chain.R | 52 R/dust.R | 950 +-- R/gaze.R | 348 - R/get_dust_part.R | 136 R/glance_foot.R | 312 - R/index_to_sprinkle.R | 484 - R/is_valid_color.R | 114 R/knit_print.dust.R | 64 R/medley.R | 150 R/medley_all_borders.R | 144 R/perform_function.R | 90 R/pixie_count.R | 104 R/pixiedust-pkg.R | 206 R/pixiedust_print_method.R | 58 R/pixieply.R | 168 R/print.dust.R | 136 R/print_dust_console.R | 220 R/print_dust_html.R | 658 +- R/print_dust_latex.R | 1230 ++-- R/print_dust_latex_hhline.R | 778 +- R/print_dust_markdown.R | 266 R/pval_string.R | 228 R/rbind_internal.R | 92 R/redust.R | 174 R/reshape_data_internal.R | 82 R/sanitize_latex.R | 750 +- R/sprinkle.R | 1721 ++--- R/sprinkle_align.R | 382 - R/sprinkle_bg.R | 372 - R/sprinkle_bg_pattern.R | 378 - R/sprinkle_border.R | 556 - R/sprinkle_caption_number.R | 194 R/sprinkle_colnames.R | 228 R/sprinkle_discrete.R | 514 - R/sprinkle_font.R | 636 +- R/sprinkle_gradient.R | 694 +- R/sprinkle_height.R | 370 - R/sprinkle_html_preserve.R | 180 R/sprinkle_merge.R | 470 - R/sprinkle_na_string.R | 314 - R/sprinkle_pad.R | 332 - R/sprinkle_print_method.R | 96 R/sprinkle_replace.R | 320 - R/sprinkle_rotate_degree.R | 312 - R/sprinkle_round.R | 320 - R/sprinkle_table.R | 90 R/sprinkle_width.R | 374 - R/str_extract_base.R | 68 R/tidy_levels_labels.R | 462 - R/zzz.R | 24 README.md | 410 - build/vignette.rds |binary inst/doc/advancedMagic.R | 680 +- inst/doc/advancedMagic.Rmd | 998 +-- inst/doc/advancedMagic.html | 7497 ++++++++++++------------- inst/doc/pixiedust.R | 326 - inst/doc/pixiedust.Rmd | 592 - inst/doc/pixiedust.html | 2905 ++++----- inst/doc/sprinkles.R | 132 inst/doc/sprinkles.Rmd | 182 inst/doc/sprinkles.html | 4619 +++++++-------- inst/save_sprinkles_rda.R | 14 inst/sprinkle_documentation.csv | 732 +- inst/sprinkle_reference.csv | 96 inst/sprinkles.csv | 94 man/as.data.frame.dust.Rd | 132 man/chain.Rd | 28 man/compoundAssignment.Rd | 30 man/dust.Rd | 484 - man/fixed_header_css.Rd | 270 man/gaze.Rd | 116 man/get_dust_part.Rd | 74 man/glance_foot.Rd | 128 man/index_to_sprinkle.Rd | 184 man/is_valid_color.Rd | 56 man/knit_print.dust.Rd | 44 man/medley.Rd | 110 man/medley_all_borders.Rd | 82 man/pixie_count.Rd | 92 man/pixiedust.Rd | 222 man/pixiedust_print_method.Rd | 42 man/pixieply.Rd | 140 man/print.dust.Rd | 104 man/pval_string.Rd | 150 man/rbind_internal.Rd | 42 man/reshape_data_internal.Rd | 52 man/sanitize_latex.Rd | 152 man/sprinkle.Rd | 1449 ++-- man/sprinkle_align.Rd | 232 man/sprinkle_bg.Rd | 268 man/sprinkle_bg_pattern.Rd | 182 man/sprinkle_bookdown.Rd | 106 man/sprinkle_border.Rd | 330 - man/sprinkle_border_collapse.Rd | 132 man/sprinkle_caption.Rd | 96 man/sprinkle_caption_number.Rd | 116 man/sprinkle_colnames.Rd | 106 man/sprinkle_discrete.Rd | 248 man/sprinkle_fixed_header.Rd | 364 - man/sprinkle_float.Rd | 104 man/sprinkle_fn.Rd | 212 man/sprinkle_font.Rd | 342 - man/sprinkle_gradient.Rd | 292 man/sprinkle_height.Rd | 230 man/sprinkle_hhline.Rd | 108 man/sprinkle_html_preserve.Rd | 110 man/sprinkle_justify.Rd | 112 man/sprinkle_label.Rd | 106 man/sprinkle_longtable.Rd | 106 man/sprinkle_merge.Rd | 232 man/sprinkle_na_string.Rd | 206 man/sprinkle_pad.Rd | 238 man/sprinkle_replace.Rd | 208 man/sprinkle_rotate_degree.Rd | 206 man/sprinkle_round.Rd | 206 man/sprinkle_sanitize.Rd | 224 man/sprinkle_tabcolsep.Rd | 98 man/sprinkle_width.Rd | 236 man/str_extract_base.Rd | 58 man/tidy_levels_labels.Rd | 302 - tests/testthat.R | 6 tests/testthat/test-as.data.frame.R | 316 - tests/testthat/test-colors.R | 160 tests/testthat/test-dust.R | 212 tests/testthat/test-dust.grouped_df.R | 36 tests/testthat/test-fixed_header_css.R | 402 - tests/testthat/test-gaze.R | 136 tests/testthat/test-get_dust_part.R | 204 tests/testthat/test-glance_foot.R | 138 tests/testthat/test-index_to_sprinkle.R | 142 tests/testthat/test-is_valid_color.R | 308 - tests/testthat/test-medley.R | 44 tests/testthat/test-medley_all_borders.R | 86 tests/testthat/test-perform_function.R | 48 tests/testthat/test-pixie_count.R | 50 tests/testthat/test-pixieply.R | 52 tests/testthat/test-print.dust-explicit.R | 102 tests/testthat/test-print_dust_html.R | 72 tests/testthat/test-print_dust_latex.R | 356 - tests/testthat/test-print_dust_latex_hhline.R | 322 - tests/testthat/test-print_dust_methods.R | 418 - tests/testthat/test-pvalString.R | 152 tests/testthat/test-redust.R | 62 tests/testthat/test-roundSafe.R | 16 tests/testthat/test-sanitize_latex.R | 82 tests/testthat/test-sprinkle_align.R | 450 - tests/testthat/test-sprinkle_bg.R | 268 tests/testthat/test-sprinkle_bg_pattern.R | 228 tests/testthat/test-sprinkle_bookdown.R | 116 tests/testthat/test-sprinkle_border.R | 706 +- tests/testthat/test-sprinkle_border_collapse.R | 96 tests/testthat/test-sprinkle_caption.R | 116 tests/testthat/test-sprinkle_caption_number.R | 116 tests/testthat/test-sprinkle_colnames.R | 78 tests/testthat/test-sprinkle_discrete.R | 396 - tests/testthat/test-sprinkle_dust_list.R | 84 tests/testthat/test-sprinkle_fixed_header.R | 658 +- tests/testthat/test-sprinkle_float.R | 114 tests/testthat/test-sprinkle_font.R | 738 +- tests/testthat/test-sprinkle_gradient.R | 764 +- tests/testthat/test-sprinkle_height.R | 278 tests/testthat/test-sprinkle_hhline.R | 114 tests/testthat/test-sprinkle_html_preserve.R | 134 tests/testthat/test-sprinkle_justify.R | 194 tests/testthat/test-sprinkle_label.R | 130 tests/testthat/test-sprinkle_longtable.R | 174 tests/testthat/test-sprinkle_merge.R | 308 - tests/testthat/test-sprinkle_na_string.R | 236 tests/testthat/test-sprinkle_pad.R | 240 tests/testthat/test-sprinkle_replace.R | 256 tests/testthat/test-sprinkle_rotate_degree.R | 206 tests/testthat/test-sprinkle_round.R | 206 tests/testthat/test-sprinkle_sanitize.R | 220 tests/testthat/test-sprinkle_tabcolsep.R | 114 tests/testthat/test-sprinkle_table.R | 24 tests/testthat/test-sprinkle_width.R | 340 - tests/testthat/test-sprinkles.R | 1126 +-- tests/testthat/test-tidy_label_level.R | 182 vignettes/advancedMagic.Rmd | 998 +-- vignettes/no_css.css | 362 - vignettes/pixiedust.Rmd | 592 - vignettes/sprinkles.Rmd | 182 187 files changed, 31792 insertions(+), 32257 deletions(-)
Title: ANSI Control Sequence Aware String Functions
Description: Counterparts to R string manipulation functions that account for
the effects of ANSI text formatting control sequences.
Author: Brodie Gaslam [aut, cre],
Elliott Sales De Andrade [ctb],
R Core Team [cph] (UTF8 byte length calcs from src/util.c)
Maintainer: Brodie Gaslam <brodie.gaslam@yahoo.com>
Diff between fansi versions 0.4.1 dated 2020-01-08 and 0.4.2 dated 2021-01-15
DESCRIPTION | 8 +-- MD5 | 42 +++++++++--------- NEWS.md | 4 + R/misc.R | 2 README.md | 38 ++++++++-------- build/vignette.rds |binary inst/doc/sgr-in-rmd.R | 14 +++--- inst/doc/sgr-in-rmd.html | 21 +++++++-- man/fansi.Rd | 1 man/has_ctl.Rd | 16 +++--- man/nchar_ctl.Rd | 49 +++++++++++++-------- man/set_knit_hooks.Rd | 14 ++++-- man/sgr_to_html.Rd | 9 ++- man/strip_ctl.Rd | 8 +-- man/strsplit_ctl.Rd | 39 +++++++++++------ man/strtrim_ctl.Rd | 27 +++++++---- man/strwrap_ctl.Rd | 78 ++++++++++++++++++++++++---------- man/substr_ctl.Rd | 62 ++++++++++++++++++--------- man/tabs_as_spaces.Rd | 10 +++- man/unhandled_ctl.Rd | 4 - tests/unitizer/utf8.R | 11 ++-- tests/unitizer/utf8.unitizer/data.rds |binary 22 files changed, 289 insertions(+), 168 deletions(-)
Title: API to Melbourne Open Data Portal
Description: Provides API to Melbourne pedestrian and weather data
<https://data.melbourne.vic.gov.au> in tidy data form.
Author: Earo Wang [aut, cre] (<https://orcid.org/0000-0001-6448-5260>),
Stuart Lee [aut] (<https://orcid.org/0000-0003-1179-8436>)
Maintainer: Earo Wang <earo.wang@gmail.com>
Diff between rwalkr versions 0.5.3 dated 2020-06-19 and 0.5.4 dated 2021-01-15
DESCRIPTION | 30 ++++++++++------- MD5 | 18 ++++++---- NAMESPACE | 3 + NEWS.md | 4 ++ R/soda.R | 7 ++-- R/weather.R |only README.md | 76 +++++++++++++++++++------------------------- man/figure/plot-1.png |binary man/melb_walk_fast.Rd | 2 - man/melb_weather.Rd |only man/pull_weather_sensors.Rd |only man/pull_weather_types.Rd |only 12 files changed, 75 insertions(+), 65 deletions(-)
Title: Penalized Regression Calibration (PRC)
Description: Computes the penalized regression calibration (PRC)
method, that allows to predict survival using high-dimensional
longitudinal predictors. PRC is described in Signorelli et al. (in
review, arXiv preprint: <arXiv:2101.04426>)).
Author: Mirko Signorelli [aut, cre, cph]
(<https://orcid.org/0000-0002-8102-3356>),
Pietro Spitali [ctb],
Roula Tsonaka [ctb]
Maintainer: Mirko Signorelli <msignorelli.rpackages@gmail.com>
Diff between pencal versions 0.2.1 dated 2021-01-06 and 0.2.2 dated 2021-01-15
DESCRIPTION | 12 ++++----- MD5 | 51 +++++++++++++++++++++--------------------- R/datasets.R | 9 ++++--- R/draw_cluster_bootstrap.R | 8 ++++-- R/fit_lmms.R | 9 ++++--- R/fit_prclmm.R | 9 ++++--- R/performance_prclmm.R | 19 +++++++++++---- R/prepare_longdata.R | 8 ++++-- R/simulate_prclmm_data.R | 8 ++++-- R/simulate_t_weibull.R | 8 ++++-- R/summarize_lmms.R | 9 ++++--- R/survpred_prclmm.R | 9 ++++--- inst/CITATION |only inst/NEWS.md | 13 +++++++++- inst/doc/pencal-vignette.Rmd | 42 +++++++++++++++++++--------------- inst/doc/pencal-vignette.html | 42 +++++++++++++++++++--------------- man/draw_cluster_bootstrap.Rd | 8 ++++-- man/fit_lmms.Rd | 8 ++++-- man/fit_prclmm.Rd | 8 ++++-- man/fitted_prclmm.Rd | 8 ++++-- man/performance_prclmm.Rd | 18 ++++++++++---- man/prepare_longdata.Rd | 8 ++++-- man/simulate_prclmm_data.Rd | 8 ++++-- man/simulate_t_weibull.Rd | 8 ++++-- man/summarize_lmms.Rd | 8 ++++-- man/survpred_prclmm.Rd | 8 ++++-- vignettes/pencal-vignette.Rmd | 42 +++++++++++++++++++--------------- 27 files changed, 238 insertions(+), 150 deletions(-)
Title: Tools for Highfrequency Data Analysis
Description: Provide functionality to manage, clean and match highfrequency
trades and quotes data, calculate various liquidity measures, estimate and
forecast volatility, detect price jumps and investigate microstructure noise and intraday
periodicity.
Author: Kris Boudt [aut, cre] (<https://orcid.org/0000-0002-1000-5142>),
Jonathan Cornelissen [aut],
Scott Payseur [aut],
Giang Nguyen [ctb],
Onno Kleen [aut] (<https://orcid.org/0000-0003-4731-4640>),
Emil Sjoerup [aut]
Maintainer: Kris Boudt <kris.boudt@ugent.be>
Diff between highfrequency versions 0.8.0 dated 2021-01-09 and 0.8.0.1 dated 2021-01-15
DESCRIPTION | 8 MD5 | 10 inst/doc/data_handing.html | 435 +++++++++++++++++++++++++++++------------ tests/testthat/Rplots.pdf |binary tests/testthat/tests_leadLag.R | 4 tests/testthat/tests_models.R | 4 6 files changed, 324 insertions(+), 137 deletions(-)
More information about ExhaustiveSearch at CRAN
Permanent link
Title: R Database Interface
Description: A database interface definition for communication
between R and relational database management systems. All classes in
this package are virtual and need to be extended by the various R/DBMS
implementations.
Author: R Special Interest Group on Databases (R-SIG-DB) [aut],
Hadley Wickham [aut],
Kirill Müller [aut, cre] (<https://orcid.org/0000-0002-1416-3412>),
R Consortium [fnd]
Maintainer: Kirill Müller <krlmlr+r@mailbox.org>
Diff between DBI versions 1.1.0 dated 2019-12-15 and 1.1.1 dated 2021-01-15
DESCRIPTION | 19 MD5 | 97 +-- NEWS.md | 22 R/DBDriver.R | 5 R/DBI-package.R | 6 R/hms.R |only R/interpolate.R | 2 R/quote.R | 6 R/table-insert.R | 10 R/table.R | 2 R/transactions.R | 1 README.md | 74 +- build/DBI.pdf |binary build/vignette.rds |binary inst/doc/DBI-1.Rmd | 12 inst/doc/DBI-1.html | 170 +++--- inst/doc/DBI-advanced.R |only inst/doc/DBI-advanced.Rmd |only inst/doc/DBI-advanced.html |only inst/doc/DBI-history.Rmd | 2 inst/doc/DBI-history.html | 33 - inst/doc/DBI-proposal.Rmd | 132 ++-- inst/doc/DBI-proposal.html | 462 +++++++++------- inst/doc/DBI.R | 50 - inst/doc/DBI.Rmd | 156 +++-- inst/doc/DBI.html | 308 ++++++---- inst/doc/backend.R | 28 inst/doc/backend.Rmd | 63 +- inst/doc/backend.html | 256 ++++----- inst/doc/spec.R | 10 inst/doc/spec.Rmd | 12 inst/doc/spec.html | 1037 +++++++++++++++++++------------------ man/Id.Rd | 2 man/dbAppendTable.Rd | 2 man/dbBind.Rd | 4 man/dbConnect.Rd | 5 man/dbExistsTable.Rd | 1 man/dbFetch.Rd | 2 man/dbListObjects.Rd | 5 man/dbListTables.Rd | 5 man/dbReadTable.Rd | 2 man/dbWriteTable.Rd | 1 tests/testthat/setup.R |only tests/testthat/test-interpolate.R | 4 tests/testthat/test-table-insert.R |only vignettes/DBI-1.Rmd | 12 vignettes/DBI-advanced.Rmd |only vignettes/DBI-history.Rmd | 2 vignettes/DBI-proposal.Rmd | 132 ++-- vignettes/DBI.Rmd | 156 +++-- vignettes/backend.Rmd | 63 +- vignettes/biblio.bib | 10 vignettes/spec.Rmd | 12 53 files changed, 1877 insertions(+), 1518 deletions(-)
Title: Download 'Scrobbles' from 'Last.fm'
Description: 'Last.fm'<https://www.last.fm> is a music platform focussed on building a
detailed profile of a users listening habits. It does this by 'scrobbling' (recording)
every track you listen to on other platforms ('spotify', 'youtube', 'soundcloud' etc)
and transferring them to your 'Last.fm' database. This allows 'Last.fm' to act as a
complete record of your entire listening history. 'scrobbler' provides helper functions
to download and analyse your listening history in R.
Author: Conor Neilson
Maintainer: Conor Neilson <condwanaland@gmail.com>
Diff between scrobbler versions 0.2.15 dated 2020-02-24 and 1.0.1 dated 2021-01-15
scrobbler-0.2.15/scrobbler/R/fetch_tracks.R |only scrobbler-0.2.15/scrobbler/inst/doc/changing-your-python-version.R |only scrobbler-0.2.15/scrobbler/inst/doc/changing-your-python-version.Rmd |only scrobbler-0.2.15/scrobbler/inst/doc/changing-your-python-version.html |only scrobbler-0.2.15/scrobbler/inst/doc/example-workflow.R |only scrobbler-0.2.15/scrobbler/inst/doc/example-workflow.Rmd |only scrobbler-0.2.15/scrobbler/inst/doc/example-workflow.html |only scrobbler-0.2.15/scrobbler/inst/scripts |only scrobbler-0.2.15/scrobbler/man/check_py_script.Rd |only scrobbler-0.2.15/scrobbler/man/fetch_tracks.Rd |only scrobbler-0.2.15/scrobbler/man/find_py_script.Rd |only scrobbler-0.2.15/scrobbler/man/install_scrobble_script.Rd |only scrobbler-0.2.15/scrobbler/man/py_path.Rd |only scrobbler-0.2.15/scrobbler/man/py_version.Rd |only scrobbler-0.2.15/scrobbler/vignettes/changing-your-python-version.Rmd |only scrobbler-0.2.15/scrobbler/vignettes/example-workflow.Rmd |only scrobbler-1.0.1/scrobbler/DESCRIPTION | 8 - scrobbler-1.0.1/scrobbler/MD5 | 47 ++++------ scrobbler-1.0.1/scrobbler/NAMESPACE | 8 - scrobbler-1.0.1/scrobbler/NEWS.md | 10 +- scrobbler-1.0.1/scrobbler/R/api_helpers.R | 12 ++ scrobbler-1.0.1/scrobbler/R/authenticate.R |only scrobbler-1.0.1/scrobbler/R/get_pages_api.R | 18 ++- scrobbler-1.0.1/scrobbler/build/vignette.rds |binary scrobbler-1.0.1/scrobbler/inst/doc/Getting-started-with-scrobbler-part-1.R |only scrobbler-1.0.1/scrobbler/inst/doc/Getting-started-with-scrobbler-part-1.Rmd |only scrobbler-1.0.1/scrobbler/inst/doc/Getting-started-with-scrobbler-part-1.html |only scrobbler-1.0.1/scrobbler/inst/doc/Getting-started-with-scrobbler-part-2.R |only scrobbler-1.0.1/scrobbler/inst/doc/Getting-started-with-scrobbler-part-2.Rmd |only scrobbler-1.0.1/scrobbler/inst/doc/Getting-started-with-scrobbler-part-2.html |only scrobbler-1.0.1/scrobbler/inst/extdata/timestamp_data.txt |only scrobbler-1.0.1/scrobbler/man/download_scrobbles.Rd | 7 + scrobbler-1.0.1/scrobbler/man/get_last_timestamp.Rd |only scrobbler-1.0.1/scrobbler/man/get_lastfm_credentials.Rd |only scrobbler-1.0.1/scrobbler/man/update_scrobbles.Rd | 7 + scrobbler-1.0.1/scrobbler/tests/testthat/test_authenticate.R |only scrobbler-1.0.1/scrobbler/tests/testthat/test_timestamp_functions.R | 11 ++ scrobbler-1.0.1/scrobbler/vignettes/Getting-started-with-scrobbler-part-1.Rmd |only scrobbler-1.0.1/scrobbler/vignettes/Getting-started-with-scrobbler-part-2.Rmd |only 39 files changed, 84 insertions(+), 44 deletions(-)
Title: R Interface to API 'vk.com'
Description: Load data from vk.com api about your communiti users and views,
ads performance, post on user wall and etc. For more information
see API Documentation <https://vk.com/dev/first_guide>.
Author: Alexey Seleznev
Maintainer: Alexey Seleznev <selesnow@gmail.com>
Diff between rvkstat versions 2.6.3 dated 2019-12-11 and 3.0.0 dated 2021-01-15
rvkstat-2.6.3/rvkstat/R/api_version_checker.R |only rvkstat-2.6.3/rvkstat/R/vkGetUserDialogs.R |only rvkstat-2.6.3/rvkstat/inst |only rvkstat-2.6.3/rvkstat/man/vkGetUserDialogs.Rd |only rvkstat-3.0.0/rvkstat/DESCRIPTION | 19 - rvkstat-3.0.0/rvkstat/MD5 | 138 ++++++------ rvkstat-3.0.0/rvkstat/NAMESPACE | 32 +- rvkstat-3.0.0/rvkstat/NEWS.md | 38 ++- rvkstat-3.0.0/rvkstat/R/sysdata.rda |binary rvkstat-3.0.0/rvkstat/R/vkAuth.R | 97 ++++++++ rvkstat-3.0.0/rvkstat/R/vkCheckLimit.R |only rvkstat-3.0.0/rvkstat/R/vkCurrentAdAccount.R |only rvkstat-3.0.0/rvkstat/R/vkGetAdAccounts.R | 57 +++- rvkstat-3.0.0/rvkstat/R/vkGetAdAgeStats.R | 129 ++++------- rvkstat-3.0.0/rvkstat/R/vkGetAdBudget.R | 43 ++- rvkstat-3.0.0/rvkstat/R/vkGetAdCampaigns.R | 100 ++++---- rvkstat-3.0.0/rvkstat/R/vkGetAdCategories.R | 67 +++-- rvkstat-3.0.0/rvkstat/R/vkGetAdCityStats.R | 144 +++++------- rvkstat-3.0.0/rvkstat/R/vkGetAdClients.R | 51 ++-- rvkstat-3.0.0/rvkstat/R/vkGetAdGenderAgeStats.R | 146 +++++------- rvkstat-3.0.0/rvkstat/R/vkGetAdGenderStats.R | 143 +++++------- rvkstat-3.0.0/rvkstat/R/vkGetAdPostsReach.R | 76 +++--- rvkstat-3.0.0/rvkstat/R/vkGetAdStatistics.R | 218 ++++++++----------- rvkstat-3.0.0/rvkstat/R/vkGetAds.R | 196 +++++++---------- rvkstat-3.0.0/rvkstat/R/vkGetAdsLayout.R | 101 ++++---- rvkstat-3.0.0/rvkstat/R/vkGetDbCities.R | 106 +++++---- rvkstat-3.0.0/rvkstat/R/vkGetDbCountries.R | 121 ++++++++-- rvkstat-3.0.0/rvkstat/R/vkGetDbRegions.R | 92 +++++--- rvkstat-3.0.0/rvkstat/R/vkGetGroupStat.R | 101 ++++++-- rvkstat-3.0.0/rvkstat/R/vkGetGroupStatAge.R | 109 ++++++--- rvkstat-3.0.0/rvkstat/R/vkGetGroupStatCity.R | 104 ++++++--- rvkstat-3.0.0/rvkstat/R/vkGetGroupStatCountries.R | 111 ++++++--- rvkstat-3.0.0/rvkstat/R/vkGetGroupStatGender.R | 105 ++++++--- rvkstat-3.0.0/rvkstat/R/vkGetGroupStatGenderAge.R | 117 +++++++--- rvkstat-3.0.0/rvkstat/R/vkGetGroupStatPostReach.R | 45 ++- rvkstat-3.0.0/rvkstat/R/vkGetGroupToken.R | 2 rvkstat-3.0.0/rvkstat/R/vkGetToken.R | 2 rvkstat-3.0.0/rvkstat/R/vkGetUserFriends.R | 150 +++++++++---- rvkstat-3.0.0/rvkstat/R/vkGetUserGroups.R | 118 +++++----- rvkstat-3.0.0/rvkstat/R/vkGetUserWall.R | 121 +++++----- rvkstat-3.0.0/rvkstat/R/vkSetters.R |only rvkstat-3.0.0/rvkstat/R/zzz.R | 71 ++++++ rvkstat-3.0.0/rvkstat/README.md | 152 ++++--------- rvkstat-3.0.0/rvkstat/build/partial.rdb |binary rvkstat-3.0.0/rvkstat/man/vkAuth.Rd | 22 + rvkstat-3.0.0/rvkstat/man/vkGetAdAccounts.Rd | 20 + rvkstat-3.0.0/rvkstat/man/vkGetAdAgeStats.Rd | 42 ++- rvkstat-3.0.0/rvkstat/man/vkGetAdBudget.Rd | 17 + rvkstat-3.0.0/rvkstat/man/vkGetAdCampaigns.Rd | 29 +- rvkstat-3.0.0/rvkstat/man/vkGetAdCategories.Rd | 23 +- rvkstat-3.0.0/rvkstat/man/vkGetAdCityStats.Rd | 38 ++- rvkstat-3.0.0/rvkstat/man/vkGetAdClients.Rd | 17 + rvkstat-3.0.0/rvkstat/man/vkGetAdGenderAgeStats.Rd | 46 ++-- rvkstat-3.0.0/rvkstat/man/vkGetAdGenderStats.Rd | 45 ++- rvkstat-3.0.0/rvkstat/man/vkGetAdPostsReach.Rd | 19 + rvkstat-3.0.0/rvkstat/man/vkGetAdStatistics.Rd | 39 +-- rvkstat-3.0.0/rvkstat/man/vkGetAds.Rd | 28 +- rvkstat-3.0.0/rvkstat/man/vkGetAdsLayout.Rd | 32 +- rvkstat-3.0.0/rvkstat/man/vkGetDbCities.Rd | 30 +- rvkstat-3.0.0/rvkstat/man/vkGetDbCountries.Rd | 26 +- rvkstat-3.0.0/rvkstat/man/vkGetDbRegions.Rd | 20 + rvkstat-3.0.0/rvkstat/man/vkGetGroupStat.Rd | 39 ++- rvkstat-3.0.0/rvkstat/man/vkGetGroupStatAge.Rd | 29 ++ rvkstat-3.0.0/rvkstat/man/vkGetGroupStatCity.Rd | 39 ++- rvkstat-3.0.0/rvkstat/man/vkGetGroupStatCountries.Rd | 40 ++- rvkstat-3.0.0/rvkstat/man/vkGetGroupStatGender.Rd | 41 ++- rvkstat-3.0.0/rvkstat/man/vkGetGroupStatGenderAge.Rd | 32 ++ rvkstat-3.0.0/rvkstat/man/vkGetGroupStatPostReach.Rd | 21 + rvkstat-3.0.0/rvkstat/man/vkGetGroupToken.Rd | 5 rvkstat-3.0.0/rvkstat/man/vkGetToken.Rd | 2 rvkstat-3.0.0/rvkstat/man/vkGetUserFriends.Rd | 25 +- rvkstat-3.0.0/rvkstat/man/vkGetUserGroups.Rd | 19 + rvkstat-3.0.0/rvkstat/man/vkGetUserWall.Rd | 21 + rvkstat-3.0.0/rvkstat/man/vkSetters.Rd |only 74 files changed, 2569 insertions(+), 1659 deletions(-)
Title: Ridge Regression with Automatic Selection of the Penalty
Parameter
Description: Linear and logistic ridge regression functions. Additionally includes special functions for
genome-wide single-nucleotide polymorphism (SNP) data.
Author: Steffen Moritz [aut, cre] (<https://orcid.org/0000-0002-0085-1804>),
Erika Cule [aut],
Dan Frankowski [aut]
Maintainer: Steffen Moritz <steffen.moritz10@gmail.com>
Diff between ridge versions 2.7 dated 2020-09-04 and 2.8 dated 2021-01-15
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NEWS.md | 5 +++++ README.md | 2 +- configure.ac | 10 ++++------ 5 files changed, 18 insertions(+), 15 deletions(-)
Title: Metabolomics Personalized Pathway Analysis Tool
Description: A comprehensive analysis tool for metabolomics data. It consists a variety of functional modules, including several new modules: a pre-processing module for normalization and imputation, an exploratory data analysis module for dimension reduction and source of variation analysis, a classification module with the new deep-learning method and other machine-learning methods, a prognosis module with cox-PH and neural-network based Cox-nnet methods, and pathway analysis module to visualize the pathway and interpret metabolite-pathway relationships. References: H. Paul Benton <http://www.metabolomics-forum.com/index.php?topic=281.0> Jeff Xia <https://github.com/cangfengzhe/Metabo/blob/master/MetaboAnalyst/website/name_match.R> Travers Ching, Xun Zhu, Lana X. Garmire (2018) <doi:10.1371/journal.pcbi.1006076>.
Author: Xinying Fang [aut],
Yu Liu [aut],
Zhijie Ren [aut],
Fadhl Alakwaa [aut],
Sijia Huang [aut],
Lana Garmire [aut, cre]
Maintainer: Lana Garmire <lana.garmire.group@gmail.com>
Diff between lilikoi versions 2.0.3 dated 2020-11-10 and 2.0.4 dated 2021-01-15
lilikoi-2.0.3/lilikoi/inst/extdata/data_format.csv |only lilikoi-2.0.3/lilikoi/inst/extdata/plasma_breast_cancer_Meta.csv |only lilikoi-2.0.3/lilikoi/inst/extdata/plasma_breast_cancer_data.csv |only lilikoi-2.0.4/lilikoi/DESCRIPTION | 8 +- lilikoi-2.0.4/lilikoi/MD5 | 28 ++++----- lilikoi-2.0.4/lilikoi/R/lilikoi.KEGGplot.R | 30 +++++----- lilikoi-2.0.4/lilikoi/R/lilikoi.MetaTOpathway.r | 2 lilikoi-2.0.4/lilikoi/R/lilikoi.PDSfun.r | 4 - lilikoi-2.0.4/lilikoi/R/lilikoi.featuresSelection.r | 2 lilikoi-2.0.4/lilikoi/R/lilikoi.machine_learning.r | 8 +- lilikoi-2.0.4/lilikoi/inst/CITATION |only lilikoi-2.0.4/lilikoi/inst/doc/Vignette.html | 4 - lilikoi-2.0.4/lilikoi/man/lilikoi.KEGGplot.Rd | 30 +++++----- lilikoi-2.0.4/lilikoi/man/lilikoi.MetaTOpathway.Rd | 2 lilikoi-2.0.4/lilikoi/man/lilikoi.PDSfun.Rd | 4 - lilikoi-2.0.4/lilikoi/man/lilikoi.featuresSelection.Rd | 2 lilikoi-2.0.4/lilikoi/man/lilikoi.machine_learning.Rd | 8 +- 17 files changed, 65 insertions(+), 67 deletions(-)
Title: Lactation Curve Parameter Estimation
Description: AllCurves() runs multiple lactation curve models and extracts selection criteria for each model.
This package summarises the most common lactation curve models from the last century and provides a tool
for researchers to quickly decide on which model fits their data best to proceed with their analysis.
Start parameters were optimized based on a dataset with 1.7 million Holstein-Friesian cows. If convergence fails,
the start parameters need to be manually adjusted.
The models included in the package are taken from:
(1) Michaelis-Menten: Michaelis, L. and M.L. Menten (1913).
<www.plantphys.info/plant_physiology/copyright/MichaelisMentenTranslation2.pdf>
(1a) Michaelis-Menten (Rook): Rook, A.J., J. France, and M.S. Dhanoa (1993).
<doi:10.1017/S002185960007684X>
(1b) Michaelis-Menten + exponential (Rook): Rook, A.J., J. France, and M.S. Dhanoa (1993).
<doi:10.1017/S002185960007684X>
(2) Brody (1923): Brody, S., A.C. Ragsdale, and C.W. Turner (1923).
<doi:10.1085/jgp.5.6.777>
(3) Brody (1924): Brody, S., C.W. Tuner, and A.C. Ragsdale (1924).
<https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2140670/>
(4) Schumacher: Schumacher, F.X. (1939) in Thornley, J.H.M. and J. France (2007).
<https://books.google.com.au/books/about/Mathematical_Models_in_Agriculture.html?id=rlwBCRSHobcC&redir_esc=y>
(4a) Schumacher (Lopez et al. 2015): Lopez, S. J. France, N.E. Odongo, R.A. McBride, E. Kebreab, O. AlZahal, B.W. McBride, and J. Dijkstra (2015).
<doi:10.3168/jds.2014-8132>
(5) Parabolic exponential (Adediran): Adediran, S.A., D.A. Ratkowsky, D.J. Donaghy, and A.E.O. Malau-Aduli (2012).
<doi:10.3168/jds.2011-4663>
(6) Wood: Wood, P.D.P. (1967).
<doi:10.1038/216164a0>
(6a) Wood reparameterized (Dhanoa): Dhanoa, M.S. (1981).
<doi:10.1017/S0003356100027276>
(6b) Wood non-linear (Cappio-Borlino): Cappio-Borlino, A., G. Pulina, and G. Rossi (1995).
<doi:10.1016/0921-4488(95)00713-U>
(7) Quadratic Polynomial (Dave): Dave, B.K. (1971) in Adediran, S.A., D.A. Ratkowsky, D.J. Donaghy, and A.E.O. Malau-Aduli (2012).
<doi:10.3168/jds.2011-4663>
(8) Cobby and Le Du (Vargas): Vargas, B., W.J. Koops, M. Herrero, and J.A.M Van Arendonk (2000).
<doi:10.3168/jds.S0022-0302(00)75005-3>
(9) Papajcsik and Bodero 1: Papajcsik, I.A. and J. Bodero (1988).
<doi:10.1017/S0003356100003275>
(10) Papajcsik and Bodero 2: Papajcsik, I.A. and J. Bodero (1988).
<doi:10.1017/S0003356100003275>
(11) Papajcsik and Bodero 3: Papajcsik, I.A. and J. Bodero (1988).
<doi:10.1017/S0003356100003275>
(12) Papajcsik and Bodero 4: Papajcsik, I.A. and J. Bodero (1988).
<doi:10.1017/S0003356100003275>
(13) Papajcsik and Bodero 6: Papajcsik, I.A. and J. Bodero (1988).
<doi:10.1017/S0003356100003275>
(14) Mixed log model 1 (Guo and Swalve): Guo, Z. and H.H. Swalve (1995).
<https://journal.interbull.org/index.php/ib/issue/view/11>
(15) Mixed log model 3 (Guo and Swalve): Guo, Z. and H.H. Swalve (1995).
<https://journal.interbull.org/index.php/ib/issue/view/11>
(16) Log-quadratic (Adediran et al. 2012): Adediran, S.A., D.A. Ratkowsky, D.J. Donaghy, and A.E.O. Malau-Aduli (2012).
<doi:10.3168/jds.2011-4663>
(17) Wilmink: J.B.M. Wilmink (1987).
<doi:10.1016/0301-6226(87)90003-0>
(17a) modified Wilmink (Jakobsen): Jakobsen J.H., P. Madsen, J. Jensen, J. Pedersen, L.G. Christensen, and D.A. Sorensen (2002).
<doi:10.3168/jds.S0022-0302(02)74231-8>
(17b) modified Wilmink (Laurenson & Strucken): Strucken E.M., Brockmann G.A., and Y.C.S.M. Laurenson (2019).
<http://www.aaabg.org/aaabghome/AAABG23papers/35Strucken23139.pdf>
(18) Bicompartemental (Ferguson and Boston 1993): Ferguson, J.D., and R. Boston (1993) in Adediran, S.A., D.A. Ratkowsky, D.J. Donaghy, and A.E.O. Malau-Aduli (2012).
<doi:10.3168/jds.2011-4663>
(19) Dijkstra: Dijkstra, J., J. France, M.S. Dhanoa, J.A. Maas, M.D. Hanigan, A.J. Rook, and D.E. Beever (1997).
<doi:10.3168/jds.S0022-0302(97)76185-X>
(20) Morant and Gnanasakthy (Pollott et al 2000): Pollott, G.E. and E. Gootwine (2000).
<doi:10.1017/S1357729800055028>
(21) Morant and Gnanasakthy (Vargas et al 2000): Vargas, B., W.J. Koops, M. Herrero, and J.A.M Van Arendonk (2000).
<doi:10.3168/jds.S0022-0302(00)75005-3>
(22) Morant and Gnanasakthy (Adediran et al. 2012): Adediran, S.A., D.A. Ratkowsky, D.J. Donaghy, and A.E.O. Malau-Aduli (2012).
<doi:10.3168/jds.2011-4663>
(23) Khandekar (Guo and Swalve): Guo, Z. and H.H. Swalve (1995).
<https://journal.interbull.org/index.php/ib/issue/view/11>
(24) Ali and Schaeffer: Ali, T.E. and L.R. Schaeffer (1987).
<https://cdnsciencepub.com/doi/pdf/10.4141/cjas87-067>
(25) Fractional Polynomial (Elvira et al. 2013): Elvira, L., F. Hernandez, P. Cuesta, S. Cano, J.-V. Gonzalez-Martin, and S. Astiz (2012).
<doi:10.1017/S175173111200239X>
(26) Pollott multiplicative (Elvira): Elvira, L., F. Hernandez, P. Cuesta, S. Cano, J.-V. Gonzalez-Martin, and S. Astiz (2012).
<doi:10.1017/S175173111200239X>
(27) Pollott modified: Adediran, S.A., D.A. Ratkowsky, D.J. Donaghy, and A.E.O. Malau-Aduli (2012).
<doi:10.3168/jds.2011-4663>
(28) Monophasic Grossman: Grossman, M. and W.J. Koops (1988).
<doi:10.3168/jds.S0022-0302(88)79723-4>
(29) Monophasic Power Transformed (Grossman 1999): Grossman, M., S.M. Hartz, and W.J. Koops (1999).
<doi:10.3168/jds.S0022-0302(99)75464-0>
(30) Diphasic (Grossman 1999): Grossman, M., S.M. Hartz, and W.J. Koops (1999).
<doi:10.3168/jds.S0022-0302(99)75464-0>
(31) Diphasic Power Transformed (Grossman 1999): Grossman, M., S.M. Hartz, and W.J. Koops (1999).
<doi:10.3168/jds.S0022-0302(99)75464-0>
(32) Legendre Polynomial (3th order): Jakobsen J.H., P. Madsen, J. Jensen, J. Pedersen, L.G. Christensen, and D.A. Sorensen (2002).
<doi:10.3168/jds.S0022-0302(02)74231-8>
(33) Legendre Polynomial (4th order): Jakobsen J.H., P. Madsen, J. Jensen, J. Pedersen, L.G. Christensen, and D.A. Sorensen (2002).
<doi:10.3168/jds.S0022-0302(02)74231-8>
(34) Legendre + Wilmink (Lidauer): Lidauer, M. and E.A. Mantysaari (1999).
<https://journal.interbull.org/index.php/ib/article/view/417>
(35) Natural Cubic Spline (3 percentiles): White, I.M.S., R. Thompson, and S. Brotherstone (1999).
<doi:10.3168/jds.S0022-0302(99)75277-X>
(36) Natural Cubic Spline (4 percentiles): White, I.M.S., R. Thompson, and S. Brotherstone (1999).
<doi:10.3168/jds.S0022-0302(99)75277-X>
(37) Natural Cubic Spline (5 percentiles): White, I.M.S., R. Thompson, and S. Brotherstone (1999)
<doi:10.3168/jds.S0022-0302(99)75277-X>
(38) Natural Cubic Spline (defined knots according to Harrell 2001): Jr. Harrell, F.E. (2001).
<https://link.springer.com/book/10.1007/978-3-319-19425-7>
The selection criteria measure the goodness of fit of the model and include:
Residual standard error (RSE),
R-square (R2),
log likelihood,
Akaike information criterion (AIC),
Akaike information criterion corrected (AICC),
Bayesian Information Criterion (BIC),
Durbin Watson coefficient (DW).
The following model parameters are included:
Residual sum of squares (RSS),
Residual standard deviation (RSD),
F-value (F) based on F-ratio test.
Author: Eva M. Strucken
Maintainer: Eva M. Strucken <eva.strucken@gmail.com>
Diff between lactcurves versions 1.0.0 dated 2019-08-20 and 1.1.0 dated 2021-01-15
DESCRIPTION | 145 ++++++--- MD5 | 12 NAMESPACE | 1 NEWS.md | 6 R/lactcurves_R-package.R | 615 +++++++++++++++++++++++++++++++--------- README.md | 20 + man/lactcurves_Documentation.Rd | 30 + 7 files changed, 642 insertions(+), 187 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-10-23 0.1.9
2020-07-15 0.1.8
2020-05-07 0.1.7
Title: Generate PMML for Various Models
Description: The Predictive Model Markup Language (PMML) is an XML-based language which provides a way for applications to define machine learning, statistical and data mining models and to share models between PMML compliant applications. More information about the PMML industry standard and the Data Mining Group can be found at <http://dmg.org/>. The generated PMML can be imported into any PMML consuming application, such as Zementis Predictive Analytics products, which integrate with web services, relational database systems and deploy natively on Hadoop in conjunction with Hive, Spark or Storm, as well as allow predictive analytics to be executed for IBM z Systems mainframe applications and real-time, streaming analytics platforms. The package isofor (used for anomaly detection) can be installed with devtools::install_github("Zelazny7/isofor").
Author: Dmitriy Bolotov [aut, cre],
Tridivesh Jena [aut],
Graham Williams [aut],
Wen-Ching Lin [aut],
Michael Hahsler [aut],
Hemant Ishwaran [aut],
Udaya B. Kogalur [aut],
Rajarshi Guha [aut],
Software AG [cph]
Maintainer: Dmitriy Bolotov <dmitriy.bolotov@softwareag.com>
Diff between pmml versions 2.3.1 dated 2020-04-22 and 2.4.0 dated 2021-01-15
DESCRIPTION | 10 MD5 | 78 +-- NEWS.md | 17 R/data-audit.R | 2 R/pmml-package.R | 12 R/pmml.ARIMA.R | 176 ++----- R/pmml.R | 4 R/pmml.multinom.R | 4 R/pmml.neighbr.R | 2 R/pmml.svm.R | 4 R/pmml.xgb.Booster.R | 2 R/utils.R | 74 --- R/xform_function.R | 56 +- R/xform_min_max.R | 24 - R/xform_wrap.R | 29 - README.md | 12 inst/doc/packages_and_functions.Rmd | 2 inst/doc/packages_and_functions.html | 28 + inst/doc/xform_function.Rmd | 4 inst/doc/xform_function.html | 621 +++++++++++++++------------ man/audit.Rd | 2 man/pmml-package.Rd | 12 man/pmml.ARIMA.Rd | 38 - man/pmml.Rd | 4 man/pmml.multinom.Rd | 5 man/pmml.neighbr.Rd | 2 man/pmml.svm.Rd | 4 man/pmml.xgb.Booster.Rd | 2 man/xform_min_max.Rd | 24 - tests/testthat/pmml-4-4.xsd | 68 ++ tests/testthat/pmml-4-4_previous_version.xsd |only tests/testthat/test_pmml.ARIMA.R | 275 ++++++++--- tests/testthat/test_pmml.iForest.R | 2 tests/testthat/test_pmml.miningschema.R | 15 tests/testthat/test_pmml.multinom.R |only tests/testthat/test_pmml.xgb.Booster.R | 18 tests/testthat/test_pmml_integration_ARIMA.R |only tests/testthat/test_schema_validation.R | 173 ++++++- tests/testthat/test_transformations.R | 35 + tests/testthat/test_utils.R |only vignettes/packages_and_functions.Rmd | 2 vignettes/xform_function.Rmd | 4 42 files changed, 1118 insertions(+), 728 deletions(-)
Title: Mixed-Effect Models, Particularly Spatial Models
Description: Inference based on mixed-effect models, including generalized linear mixed models with spatial correlations and models with non-Gaussian random effects (e.g., Beta). Various approximations of likelihood or restricted likelihood are implemented, in particular Laplace approximation and h-likelihood (Lee and Nelder 2001 <doi:10.1093/biomet/88.4.987>). Both classical geostatistical models, and Markov random field models on irregular grids (as considered in the 'INLA' package, <https://www.r-inla.org>), can be fitted. Variation in residual variance (heteroscedasticity) can itself be represented by a mixed-effect model.
Author: François Rousset [aut, cre, cph]
(<https://orcid.org/0000-0003-4670-0371>),
Jean-Baptiste Ferdy [aut, cph],
Alexandre Courtiol [aut] (<https://orcid.org/0000-0003-0637-2959>),
GSL authors [ctb] (src/gsl_bessel.*)
Maintainer: François Rousset <francois.rousset@umontpellier.fr>
Diff between spaMM versions 3.5.0 dated 2020-10-03 and 3.6.0 dated 2021-01-15
spaMM-3.5.0/spaMM/R/source_MV.R |only spaMM-3.6.0/spaMM/DESCRIPTION | 10 spaMM-3.6.0/spaMM/MD5 | 259 +-- spaMM-3.6.0/spaMM/NAMESPACE | 8 spaMM-3.6.0/spaMM/R/COMPoisson.R | 27 spaMM-3.6.0/spaMM/R/CanonizeRanPars.R | 13 spaMM-3.6.0/spaMM/R/GLM.fit.R | 12 spaMM-3.6.0/spaMM/R/HLCor.R | 8 spaMM-3.6.0/spaMM/R/HLCor_body.R | 27 spaMM-3.6.0/spaMM/R/HLFactorList.R | 108 - spaMM-3.6.0/spaMM/R/HLfit.R | 20 spaMM-3.6.0/spaMM/R/HLfit_Internals.R | 722 +++++++--- spaMM-3.6.0/spaMM/R/HLfit_b_internals.R | 126 + spaMM-3.6.0/spaMM/R/HLfit_body.R | 521 ++----- spaMM-3.6.0/spaMM/R/HLfit_body_augZXy.R | 5 spaMM-3.6.0/spaMM/R/HLframes.R | 98 - spaMM-3.6.0/spaMM/R/IRLS_internals.R | 6 spaMM-3.6.0/spaMM/R/LR.R | 205 +- spaMM-3.6.0/spaMM/R/LevM_v_h.R | 6 spaMM-3.6.0/spaMM/R/LevM_v_h_spprec.R | 6 spaMM-3.6.0/spaMM/R/MakeCovEst.R | 10 spaMM-3.6.0/spaMM/R/Matern_family.R | 11 spaMM-3.6.0/spaMM/R/bloc_lambda.R | 6 spaMM-3.6.0/spaMM/R/calc_logdisp_cov.R | 254 --- spaMM-3.6.0/spaMM/R/confint.R | 48 spaMM-3.6.0/spaMM/R/corrHLfit-internals.R | 130 - spaMM-3.6.0/spaMM/R/corrHLfit.R | 21 spaMM-3.6.0/spaMM/R/corrHLfit_body.R | 4 spaMM-3.6.0/spaMM/R/corrPars.R | 36 spaMM-3.6.0/spaMM/R/cov_new_fix.R | 443 +++--- spaMM-3.6.0/spaMM/R/determine_spprec.R | 4 spaMM-3.6.0/spaMM/R/dispGammaGLM.R | 6 spaMM-3.6.0/spaMM/R/extractors.R | 427 ++++- spaMM-3.6.0/spaMM/R/fit_as_ZX.R | 62 spaMM-3.6.0/spaMM/R/fit_as_sparsePrecision.R | 59 spaMM-3.6.0/spaMM/R/fitme.R | 36 spaMM-3.6.0/spaMM/R/fitme_body.R | 93 - spaMM-3.6.0/spaMM/R/fitme_fitmv_internals.R |only spaMM-3.6.0/spaMM/R/fitmecorrHLfit_body_internals.R | 554 +++++-- spaMM-3.6.0/spaMM/R/fitmv_body.R |only spaMM-3.6.0/spaMM/R/fitmv_internals.R |only spaMM-3.6.0/spaMM/R/geo_info.R | 113 + spaMM-3.6.0/spaMM/R/get_inits_by_glm.R | 265 ++- spaMM-3.6.0/spaMM/R/hatvalues.R | 32 spaMM-3.6.0/spaMM/R/locoptim.R | 36 spaMM-3.6.0/spaMM/R/makeLowerUpper.R | 54 spaMM-3.6.0/spaMM/R/mapMM.R | 89 + spaMM-3.6.0/spaMM/R/multiFRK.R | 80 - spaMM-3.6.0/spaMM/R/multinomial.R | 38 spaMM-3.6.0/spaMM/R/negbin.R | 6 spaMM-3.6.0/spaMM/R/newPLS.R | 165 +- spaMM-3.6.0/spaMM/R/plot.HLfit.R | 2 spaMM-3.6.0/spaMM/R/poisson.R | 2 spaMM-3.6.0/spaMM/R/postfit_internals.R | 35 spaMM-3.6.0/spaMM/R/predict.R | 514 ++++--- spaMM-3.6.0/spaMM/R/predict_marg.R | 5 spaMM-3.6.0/spaMM/R/predict_mv.R |only spaMM-3.6.0/spaMM/R/preprocess.R | 689 +++------ spaMM-3.6.0/spaMM/R/preprocess_MV.R |only spaMM-3.6.0/spaMM/R/preprocess_internals.R | 255 +++ spaMM-3.6.0/spaMM/R/profile.R | 12 spaMM-3.6.0/spaMM/R/sXaug_EigenDense_QRP_Chol_scaled.R | 10 spaMM-3.6.0/spaMM/R/sXaug_Matrix_QRP_CHM.R | 7 spaMM-3.6.0/spaMM/R/sXaug_sparsePrecisions.R | 97 - spaMM-3.6.0/spaMM/R/safe_opt.R | 10 spaMM-3.6.0/spaMM/R/separator.R | 14 spaMM-3.6.0/spaMM/R/simulate.HL.R | 199 +- spaMM-3.6.0/spaMM/R/spaMM.data.R | 5 spaMM-3.6.0/spaMM/R/spaMM_boot.R | 4 spaMM-3.6.0/spaMM/R/step_HLfit.R | 6 spaMM-3.6.0/spaMM/R/summary.HL.R | 273 ++- spaMM-3.6.0/spaMM/R/terms.R | 35 spaMM-3.6.0/spaMM/R/update.HL.R | 134 + spaMM-3.6.0/spaMM/R/utils.R | 48 spaMM-3.6.0/spaMM/build/partial.rdb |binary spaMM-3.6.0/spaMM/inst/NEWS.Rd | 50 spaMM-3.6.0/spaMM/man/AIC.Rd | 16 spaMM-3.6.0/spaMM/man/CauchyCorr.Rd | 6 spaMM-3.6.0/spaMM/man/HLCor.Rd | 17 spaMM-3.6.0/spaMM/man/HLfit.Rd | 8 spaMM-3.6.0/spaMM/man/IMRF.Rd | 25 spaMM-3.6.0/spaMM/man/Matern.corr.Rd | 10 spaMM-3.6.0/spaMM/man/anova.HLfit.Rd | 28 spaMM-3.6.0/spaMM/man/arabidopsis.Rd | 2 spaMM-3.6.0/spaMM/man/blackcap.Rd | 4 spaMM-3.6.0/spaMM/man/corrHLfit.Rd | 4 spaMM-3.6.0/spaMM/man/corrMatrix.Rd | 6 spaMM-3.6.0/spaMM/man/covStruct.Rd | 8 spaMM-3.6.0/spaMM/man/div_info.Rd | 2 spaMM-3.6.0/spaMM/man/extractors.Rd | 11 spaMM-3.6.0/spaMM/man/fitme.Rd | 16 spaMM-3.6.0/spaMM/man/fitmv.Rd |only spaMM-3.6.0/spaMM/man/fix_predVar.Rd | 2 spaMM-3.6.0/spaMM/man/fixed.LRT.Rd | 10 spaMM-3.6.0/spaMM/man/fixed.Rd | 1 spaMM-3.6.0/spaMM/man/get_RLRSim_args.Rd | 23 spaMM-3.6.0/spaMM/man/get_inits_from_fit.Rd | 6 spaMM-3.6.0/spaMM/man/good-practice.Rd | 5 spaMM-3.6.0/spaMM/man/how.Rd | 4 spaMM-3.6.0/spaMM/man/make.scaled.dist.Rd | 2 spaMM-3.6.0/spaMM/man/mapMM.Rd | 28 spaMM-3.6.0/spaMM/man/multinomial.Rd | 79 - spaMM-3.6.0/spaMM/man/mv.Rd |only spaMM-3.6.0/spaMM/man/plot.HL.Rd | 2 spaMM-3.6.0/spaMM/man/predict.Rd | 15 spaMM-3.6.0/spaMM/man/residVar.Rd |only spaMM-3.6.0/spaMM/man/seaMask.Rd | 9 spaMM-3.6.0/spaMM/man/seeds.Rd | 4 spaMM-3.6.0/spaMM/man/spaMM-internal.Rd | 1 spaMM-3.6.0/spaMM/man/spaMM.Rd | 27 spaMM-3.6.0/spaMM/man/spaMM_boot.Rd | 4 spaMM-3.6.0/spaMM/man/update.Rd | 38 spaMM-3.6.0/spaMM/man/vcov.Rd | 9 spaMM-3.6.0/spaMM/tests/test-all.R | 9 spaMM-3.6.0/spaMM/tests/testthat/test-IMRF.R | 36 spaMM-3.6.0/spaMM/tests/testthat/test-IsoriX.R | 2 spaMM-3.6.0/spaMM/tests/testthat/test-LRT-boot.R | 4 spaMM-3.6.0/spaMM/tests/testthat/test-adjacency-long.R | 7 spaMM-3.6.0/spaMM/tests/testthat/test-augZXy.R | 34 spaMM-3.6.0/spaMM/tests/testthat/test-confint.R | 31 spaMM-3.6.0/spaMM/tests/testthat/test-dhglm.R | 13 spaMM-3.6.0/spaMM/tests/testthat/test-distMatrix.R | 14 spaMM-3.6.0/spaMM/tests/testthat/test-filled.mapMM.R | 2 spaMM-3.6.0/spaMM/tests/testthat/test-fixedLRT.R | 4 spaMM-3.6.0/spaMM/tests/testthat/test-inverse.Gamma.R | 2 spaMM-3.6.0/spaMM/tests/testthat/test-multinomial.R | 61 spaMM-3.6.0/spaMM/tests/testthat/test-nested-geostat.R | 4 spaMM-3.6.0/spaMM/tests/testthat/test-poly.R | 33 spaMM-3.6.0/spaMM/tests/testthat/test-predVar-Matern-corrMatrix.R | 8 spaMM-3.6.0/spaMM/tests/testthat/test-predVar.R | 31 spaMM-3.6.0/spaMM/tests/testthat/test-random-slope.R | 14 spaMM-3.6.0/spaMM/tests/testthat/test-spaMM.R | 5 spaMM-3.6.0/spaMM/tests/testthat/test-truncated.R | 9 spaMM-3.6.0/spaMM/tests/testthat/test_init_NaN.R | 6 spaMM-3.6.0/spaMM/tests/testthat/test_outer.R | 2 135 files changed, 5164 insertions(+), 3274 deletions(-)
Title: Random Subspace Ensemble Classification and Variable Screening
Description: We propose a general ensemble classification framework, RaSE algorithm, for the sparse classification problem. In RaSE algorithm, for each weak learner, some random subspaces are generated and the optimal one is chosen to train the model on the basis of some criterion. To be adapted to the problem, a novel criterion, ratio information criterion (RIC) is put up with based on Kullback-Leibler divergence. Besides minimizing RIC, multiple criteria can be applied, for instance, minimizing extended Bayesian information criterion (eBIC), minimizing training error, minimizing the validation error, minimizing the cross-validation error, minimizing leave-one-out error. There are various choices of base classifier, for instance, linear discriminant analysis, quadratic discriminant analysis, k-nearest neighbour, logistic regression, decision trees, random forest, support vector machines. RaSE algorithm can also be applied to do feature ranking, providing us the importance of each feature based on the selected percentage in multiple subspaces. RaSE framework can be extended to the general prediction framework, including both classification and regression. We can use the selected percentages of variables for variable screening. The latest version added the variable screening function available for both regression and classification.
Author: Ye Tian [aut, cre] and Yang Feng [aut]
Maintainer: Ye Tian <ye.t@columbia.edu>
Diff between RaSEn versions 1.1.0 dated 2020-10-21 and 2.0.0 dated 2021-01-15
DESCRIPTION | 13 +- MD5 | 44 ++++---- NAMESPACE | 8 + R/RaCutoff.R | 4 R/RaModel.R | 248 +++++++++++++++++++++++++++++++--------------- R/RaPlot.R | 2 R/RaRank.R |only R/RaScreen.R |only R/RaSubset.R | 123 +++++++++++++++------- R/RaSubsetsc_c.R |only R/RaSubsetsc_rg.R |only R/Rase.R | 179 +++++++++++++++++++++++---------- R/funcs.R | 114 ++++++--------------- R/print.RaSE.R | 6 - inst/doc/RaSEn-demo.R | 25 +++- inst/doc/RaSEn-demo.Rmd | 99 +++++++++++++----- inst/doc/RaSEn-demo.pdf |binary man/RaModel.Rd | 33 ++++-- man/RaPlot.Rd | 2 man/RaRank.Rd |only man/RaScreen.Rd |only man/Rase.Rd | 46 +++++--- man/print.RaSE.Rd | 5 vignettes/RaSEn-demo.Rmd | 99 +++++++++++++----- vignettes/RaSEn-demo.html |only vignettes/RaSEn-demo.md |only vignettes/reference.bib | 35 +++++- 27 files changed, 707 insertions(+), 378 deletions(-)
Title: Estimation of Model-Based Predictions, Contrasts and Means
Description: Implements a general interface for model-based estimations for a wide variety of models (see support list of insight; Lüdecke, Waggoner & Makowski (2019) <doi:10.21105/joss.01412>), used in the computation of marginal means, contrast analysis and predictions.
Author: Dominique Makowski [aut, cre] (<https://orcid.org/0000-0001-5375-9967>),
Daniel Lüdecke [aut] (<https://orcid.org/0000-0002-8895-3206>),
Mattan S. Ben-Shachar [aut] (<https://orcid.org/0000-0002-4287-4801>)
Maintainer: Dominique Makowski <dom.makowski@gmail.com>
Diff between modelbased versions 0.4.0 dated 2020-12-06 and 0.5.0 dated 2021-01-15
DESCRIPTION | 14 +-- MD5 | 56 ++++++------ NAMESPACE | 3 R/estimate_contrasts.bayesian.R | 12 +- R/estimate_means.bayesian.R | 6 - R/estimate_means.frequentist.R | 4 R/estimate_response.bayesian.R | 30 +++--- R/estimate_response.frequentist.R | 25 +++-- R/estimate_slopes.R | 4 R/estimate_smooth.R | 8 - R/print.R | 2 R/utils_estimate_response_init.R | 12 +- R/utils_predict_wrapper.R | 41 +++++--- R/visualisation_matrix.R | 1 R/visualisation_matrix.models.R | 99 ++++++++++++--------- man/estimate_contrasts.stanreg.Rd | 12 +- man/estimate_means.lm.Rd | 4 man/estimate_means.stanreg.Rd | 6 - man/estimate_response.Rd | 10 +- man/estimate_response.glm.Rd | 10 +- man/estimate_response.stanreg.Rd | 16 ++- tests/testthat/test-estimate_contrasts.R | 101 +++++++++++++--------- tests/testthat/test-estimate_link.R |only tests/testthat/test-estimate_means.R | 56 +++++------- tests/testthat/test-estimate_response.R | 1 tests/testthat/test-estimate_smooth.R | 4 tests/testthat/test-glmmTMB.R | 20 +++- tests/testthat/test-mgcv.R | 23 ++--- tests/testthat/test-visualisation_matrix.R | 2 tests/testthat/test-visualisation_matrix_models.R |only 30 files changed, 334 insertions(+), 248 deletions(-)
Title: Download Weather Data from Environment and Climate Change Canada
Description: Provides means for downloading historical weather data from
the Environment and Climate Change Canada website
(<https://climate.weather.gc.ca/historical_data/search_historic_data_e.html>).
Data can be downloaded from multiple stations and over large date ranges
and automatically processed into a single dataset. Tools are also provided
to identify stations either by name or proximity to a location.
Author: Steffi LaZerte [aut, cre] (<https://orcid.org/0000-0002-7690-8360>),
Sam Albers [ctb] (<https://orcid.org/0000-0002-9270-7884>),
Nick Brown [ctb] (<https://orcid.org/0000-0002-2719-0671>)
Maintainer: Steffi LaZerte <steffi@steffi.ca>
Diff between weathercan versions 0.4.0 dated 2020-09-02 and 0.5.0 dated 2021-01-15
DESCRIPTION | 6 MD5 | 122 NEWS.md | 14 R/sysdata.rda |binary R/weather.R | 5 build/vignette.rds |binary data/codes.rda |binary data/finches.rda |binary data/flags.rda |binary data/glossary.rda |binary data/glossary_normals.rda |binary data/kamloops.rda |binary data/kamloops_day.rda |binary data/normals_measurements.rda |binary data/pg.rda |binary data/stations.rda |binary inst/WORDLIST | 2 inst/doc/flags.html | 34 inst/doc/glossary.html | 55 inst/doc/glossary_normals.html | 39 inst/doc/interpolate_data.html | 40 inst/doc/normals.html | 138 inst/doc/weathercan.R | 3 inst/doc/weathercan.Rmd | 3 inst/doc/weathercan.html | 70 tests/fixtures/meta_raw1.yml | 17 tests/fixtures/meta_raw2.yml | 9 tests/fixtures/meta_raw3.yml | 9 tests/fixtures/normals_url_5010480.yml | 56 tests/fixtures/weather_day_1274_1275_2017.yml | 36 tests/fixtures/weather_day_42013_51423_2017.yml | 27 tests/fixtures/weather_day_4291_51423_1928.yml | 18 tests/fixtures/weather_day_51423_2018.yml | 9 tests/fixtures/weather_day_51423_54398_2016.yml | 9 tests/fixtures/weather_day_54398_2016_2017.yml | 27 tests/fixtures/weather_day_6819_51423_2017_2018.yml | 27 tests/fixtures/weather_hour_1274_1275_2012-11.yml | 1479 - tests/fixtures/weather_hour_1275_1001_2017-01.yml | 61 tests/fixtures/weather_hour_27534_2001-12_2002-01.yml | 3035 +- tests/fixtures/weather_hour_42203_49909_2006-04.yml | 9848 ++++++++ tests/fixtures/weather_hour_42203_49909_2017-09.yml | 2958 +- tests/fixtures/weather_hour_50821_2018.yml | 1527 - tests/fixtures/weather_hour_6556_1965.yml | 41 tests/fixtures/weather_hour_6819_2017.yml | 1133 tests/fixtures/weather_hour_6819_51423_2017-08_2018-05.yml |14974 ++++++------- tests/fixtures/weather_month_1274.yml | 18 tests/fixtures/weather_month_1275_51423.yml | 18 tests/fixtures/weather_month_4291_27534.yml | 36 tests/fixtures/weather_month_5217.yml | 18 tests/fixtures/weather_month_5401_5940.yml | 18 tests/fixtures/weather_month_5410.yml | 18 tests/fixtures/weather_raw1.yml | 1512 - tests/fixtures/weather_raw2.yml | 9 tests/fixtures/weather_raw3.yml | 9 tests/testthat/test_03_station_dl.R | 2 tests/testthat/test_04_weather_raw.R | 4 tests/testthat/test_06_weather_dl_1_hour.R | 8 tests/testthat/test_07_weather_args.R | 4 tests/testthat/test_08_normals.R | 10 tools/readme/kam_plt-1.png |binary vignettes/normals_files/figure-html/unnamed-chunk-7-1.png |binary vignettes/weathercan.Rmd | 3 62 files changed, 23431 insertions(+), 14087 deletions(-)
Title: Tools for Working with 'Taxonomic' Databases
Description: Tools for working with 'taxonomic' databases, including
utilities for downloading databases, loading them into various
'SQL' databases, cleaning up files, and providing a 'SQL' connection
that can be used to do 'SQL' queries directly or used in 'dplyr'.
Author: Scott Chamberlain [aut, cre],
Zebulun Arendsee [aut]
Maintainer: Scott Chamberlain <myrmecocystus+r@gmail.com>
Diff between taxizedb versions 0.2.2 dated 2020-08-26 and 0.3.0 dated 2021-01-15
taxizedb-0.2.2/taxizedb/README.md |only taxizedb-0.2.2/taxizedb/build |only taxizedb-0.2.2/taxizedb/inst/doc |only taxizedb-0.2.2/taxizedb/vignettes |only taxizedb-0.3.0/taxizedb/DESCRIPTION | 9 +- taxizedb-0.3.0/taxizedb/LICENSE | 4 - taxizedb-0.3.0/taxizedb/MD5 | 27 +++---- taxizedb-0.3.0/taxizedb/NAMESPACE | 1 taxizedb-0.3.0/taxizedb/NEWS.md | 13 +++ taxizedb-0.3.0/taxizedb/R/ap_classification.R | 4 - taxizedb-0.3.0/taxizedb/R/db_download.R | 51 ++++++++++---- taxizedb-0.3.0/taxizedb/R/rank_utils.R | 3 taxizedb-0.3.0/taxizedb/R/taxa_at.R |only taxizedb-0.3.0/taxizedb/man/db_download.Rd | 19 +++-- taxizedb-0.3.0/taxizedb/man/taxa_at.Rd |only taxizedb-0.3.0/taxizedb/tests/testthat/test-db_download.R | 10 +- taxizedb-0.3.0/taxizedb/tests/testthat/test-taxa_at.R |only 17 files changed, 89 insertions(+), 52 deletions(-)
Title: Space-Time Estimation of Forest Variables using the FIA Database
Description: The goal of 'rFIA' is to increase the accessibility and use of the United States Forest Services (USFS) Forest Inventory and Analysis (FIA) Database by providing a user-friendly, open source toolkit to easily query and analyze FIA Data. Designed to accommodate a wide range of potential user objectives, 'rFIA' simplifies the estimation of forest variables from the FIA Database and allows all R users (experts and newcomers alike) to unlock the flexibility inherent to the Enhanced FIA design. Specifically, 'rFIA' improves accessibility to the spatio-temporal estimation capacity of the FIA Database by producing space-time indexed summaries of forest variables within user-defined population boundaries. Direct integration with other popular R packages (e.g., 'dplyr', 'tidyr', and 'sf') facilitates efficient space-time query and data summary, and supports common data representations and API design. The package implements design-based estimation procedures outlined by Bechtold & Patterson (2005) <doi:10.2737/SRS-GTR-80>, and has been validated against estimates and sampling errors produced by FIA 'EVALIDator'. Current development is focused on the implementation of spatially-enabled model-assisted estimators to improve population, change, and ratio estimates.
Author: Hunter Stanke [aut, cre],
Andrew Finley [aut]
Maintainer: Hunter Stanke <stankehu@msu.edu>
Diff between rFIA versions 0.3.0 dated 2020-12-07 and 0.3.1 dated 2021-01-15
DESCRIPTION | 6 MD5 | 49 ++-- NAMESPACE | 3 R/acHelper.R |only R/area.R | 24 +- R/areaChange.R |only R/areaHelper.R | 85 ++++++- R/biomass.R | 603 ++++++++++++++++++++++++++++++++++++++++++++++++++- R/biomassHelper.R | 590 ++++++++++++++++++++----------------------------- R/clip.R | 2 R/fsi.R | 58 +++- R/fsiHelper.R | 26 +- R/functionsFIA.R | 35 ++ R/globalVars.R | 27 ++ R/growMort.R | 46 ++- R/growMortHelper.R | 11 R/sysdata.rda |binary R/vitalRates.R | 37 +-- R/vitalRatesHelper.R | 97 ++------ R/volHelper.R |only R/volume.R |only build/rFIA.pdf |binary man/areaChange.Rd |only man/biomass.Rd | 64 +++-- man/biomass_old.Rd |only man/fsi.Rd | 17 + man/getFIA.Rd | 2 man/growMort.Rd | 2 man/volume.Rd |only 29 files changed, 1233 insertions(+), 551 deletions(-)
Title: Biodiversity Data Visualizations
Description: Provides a set of functions to create basic visualizations to quickly
preview different aspects of biodiversity information such as inventory
completeness, extent of coverage (taxonomic, temporal and geographic), gaps
and biases.
Author: Vijay Barve [aut, cre] (<https://orcid.org/0000-0002-4852-2567>),
Javier Otegui [aut] (<https://orcid.org/0000-0002-8997-3559>)
Maintainer: Vijay Barve <vijay.barve@gmail.com>
Diff between bdvis versions 0.2.22 dated 2018-09-26 and 0.2.28 dated 2021-01-15
bdvis-0.2.22/bdvis/R/fixstr.R |only bdvis-0.2.22/bdvis/man/fixstr.Rd |only bdvis-0.2.28/bdvis/DESCRIPTION | 21 +++-- bdvis-0.2.28/bdvis/MD5 | 48 ++++++------- bdvis-0.2.28/bdvis/NAMESPACE | 1 bdvis-0.2.28/bdvis/NEWS | 10 ++ bdvis-0.2.28/bdvis/R/bdcomplete.R | 27 +------ bdvis-0.2.28/bdvis/R/bdsummary.R | 11 +-- bdvis-0.2.28/bdvis/R/bdvis.R | 1 bdvis-0.2.28/bdvis/R/format_bdvis.R | 78 +++++++++++----------- bdvis-0.2.28/bdvis/R/getcellid.R | 30 +++++++- bdvis-0.2.28/bdvis/R/gettaxo.R | 4 + bdvis-0.2.28/bdvis/R/mapgrid.R | 109 +++++++++++-------------------- bdvis-0.2.28/bdvis/README.md | 6 + bdvis-0.2.28/bdvis/man/bdcalendarheat.Rd | 5 - bdvis-0.2.28/bdvis/man/bdcomplete.Rd | 4 - bdvis-0.2.28/bdvis/man/bdsummary.Rd | 7 + bdvis-0.2.28/bdvis/man/bdvis.Rd | 2 bdvis-0.2.28/bdvis/man/bdwebmap.Rd | 3 bdvis-0.2.28/bdvis/man/chronohorogram.Rd | 15 +++- bdvis-0.2.28/bdvis/man/format_bdvis.Rd | 33 +++++---- bdvis-0.2.28/bdvis/man/getcellid.Rd | 16 ++-- bdvis-0.2.28/bdvis/man/gettaxo.Rd | 14 ++- bdvis-0.2.28/bdvis/man/mapgrid.Rd | 27 +++++-- bdvis-0.2.28/bdvis/man/taxotree.Rd | 10 ++ bdvis-0.2.28/bdvis/man/tempolar.Rd | 15 +++- 26 files changed, 270 insertions(+), 227 deletions(-)