Sat, 13 Feb 2021

Package glmBfp (with last version 0.0-60) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2020-06-16 0.0-60
2017-08-03 0.0-51
2016-07-07 0.0-48
2016-06-29 0.0-47

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Package bfp (with last version 0.0-41) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2020-06-21 0.0-41
2019-01-21 0.0-40
2019-01-16 0.0-39.1
2018-05-14 0.0-39
2018-01-23 0.0-38
2018-01-10 0.0-37
2017-04-05 0.0-35

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Package RcppFastFloat updated to version 0.0.2 with previous version 0.0.1 dated 2021-02-05

Title: 'Rcpp' Bindings for the 'fast_float' Header-Only Library for Number Parsing
Description: Converting ascii text into (floating-point) numeric values is a very common problem. The 'fast_float' header-only C++ library by Daniel Lemire does it very well and very fast at up to or over to 1 gigabyte per second as described in more detail in <arXiv:2101.11408>. 'fast_float' is licensed under the Apache 2.0 license and provided here for use by other R packages via a simple 'LinkingTo:' statement.
Author: Dirk Eddelbuettel, Brendan Knapp
Maintainer: Dirk Eddelbuettel <edd@debian.org>

Diff between RcppFastFloat versions 0.0.1 dated 2021-02-05 and 0.0.2 dated 2021-02-13

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Package MixfMRI updated to version 0.1-1 with previous version 0.1-0 dated 2018-04-26

Title: Mixture fMRI Clustering Analysis
Description: Utilizing model-based clustering (unsupervised) for functional magnetic resonance imaging (fMRI) data. The developed methods (Chen and Maitra (2021) <arXiv:2102.03639>) include 2D and 3D clustering analyses (for p-values with voxel locations) and segmentation analyses (for p-values alone) for fMRI data where p-values indicate significant level of activation responding to stimulate of interesting. The analyses are mainly identifying active voxel/signal associated with normal brain behaviors. Analysis pipelines (R scripts) utilizing this package (see examples in 'inst/workflow/') is also implemented with high performance techniques.
Author: Wei-Chen Chen [aut, cre], Ranjan Maitra [aut], Dan Nettleton [ctb]
Maintainer: Wei-Chen Chen <wccsnow@gmail.com>

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Package RecordTest updated to version 2.0.0 with previous version 1.0.1 dated 2020-10-05

Title: Inference Tools in Time Series Based on Record Statistics
Description: Statistical tools based on the probabilistic properties of the record occurrence in a sequence of independent and identically distributed continuous random variables. In particular, tools to prepare a time series as well as distribution-free tests and graphical tools to visualize the record occurrence.
Author: Jorge Castillo-Mateo [aut, cre, cph] (<https://orcid.org/0000-0003-3859-0248>), Ana C. Cebrián [ths], Jesús Asín [ths]
Maintainer: Jorge Castillo-Mateo <jorgecastillomateo@gmail.com>

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More information about RecordTest at CRAN
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Package ipmisc updated to version 6.0.0 with previous version 5.0.2 dated 2021-01-08

Title: Miscellaneous Functions for Data Cleaning and Analysis
Description: Provides functions needed for data cleaning and formatting and forms data cleaning and wrangling backend for the following packages: 'ggstatsplot', 'pairwiseComparisons', 'statsExpressions', and 'tidyBF'.
Author: Indrajeet Patil [aut, cre, cph] (<https://orcid.org/0000-0003-1995-6531>)
Maintainer: Indrajeet Patil <patilindrajeet.science@gmail.com>

Diff between ipmisc versions 5.0.2 dated 2021-01-08 and 6.0.0 dated 2021-02-13

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Package keyToEnglish updated to version 0.2.1 with previous version 0.2.0 dated 2020-10-02

Title: Convert Data to Memorable Phrases
Description: Convert keys and other values to memorable phrases. Includes some methods to build lists of words.
Author: Max Candocia
Maintainer: Max Candocia <maxcandocia@gmail.com>

Diff between keyToEnglish versions 0.2.0 dated 2020-10-02 and 0.2.1 dated 2021-02-13

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Package RChest updated to version 1.0.3 with previous version 1.0.2 dated 2021-02-05

Title: Locating Distributional Changes in Highly Dependent Time Series
Description: Provides algorithms to locate multiple distributional change-points in piecewise stationary time series. The algorithms are provably consistent, even in the presence of long-range dependencies. Knowledge of the number of change-points is not required. The code is written in Go and interfaced with R.
Author: Lukas Zierahn [cre, aut], Azadeh Khaleghi [aut]
Maintainer: Lukas Zierahn <lukas@kappa-mm.de>

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Package rBiasCorrection updated to version 0.2.6 with previous version 0.2.5 dated 2020-12-17

Title: Correct Bias in DNA Methylation Analyses
Description: Implementation of the algorithms (with minor modifications) to correct bias in quantitative DNA methylation analyses as described by Moskalev et al. (2011) <doi:10.1093/nar/gkr213>.
Author: Lorenz A. Kapsner [cre, aut, cph] (<https://orcid.org/0000-0003-1866-860X>), Evgeny A. Moskalev [aut]
Maintainer: Lorenz A. Kapsner <lorenz.kapsner@gmail.com>

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Package loose.rock updated to version 1.1.0 with previous version 1.0.16 dated 2019-05-31

Title: Tools for Survival Analysis and Data Science
Description: Collection of functions to improve work-flow in survival analysis and data science. The package features include: the generation of balanced datasets, live retrieval of protein coding genes from two public databases, generation of random matrix based on covariance matrix, cache function to store function results. This work was supported by two grants from the Portuguese Foundation for Science and technology, and the EU Commission under SOUND project.
Author: André Veríssimo [aut, cre], Susana Vinga [aut]
Maintainer: André Veríssimo <andre.verissimo@tecnico.ulisboa.pt>

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Package rstatix updated to version 0.7.0 with previous version 0.6.0 dated 2020-06-18

Title: Pipe-Friendly Framework for Basic Statistical Tests
Description: Provides a simple and intuitive pipe-friendly framework, coherent with the 'tidyverse' design philosophy, for performing basic statistical tests, including t-test, Wilcoxon test, ANOVA, Kruskal-Wallis and correlation analyses. The output of each test is automatically transformed into a tidy data frame to facilitate visualization. Additional functions are available for reshaping, reordering, manipulating and visualizing correlation matrix. Functions are also included to facilitate the analysis of factorial experiments, including purely 'within-Ss' designs (repeated measures), purely 'between-Ss' designs, and mixed 'within-and-between-Ss' designs. It's also possible to compute several effect size metrics, including "eta squared" for ANOVA, "Cohen's d" for t-test and 'Cramer V' for the association between categorical variables. The package contains helper functions for identifying univariate and multivariate outliers, assessing normality and homogeneity of variances.
Author: Alboukadel Kassambara [aut, cre]
Maintainer: Alboukadel Kassambara <alboukadel.kassambara@gmail.com>

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Package Biostatistics updated to version 1.0.1 with previous version 1.0.0 dated 2021-01-22

Title: Statistics Tutorials for Biologists
Description: Tutorials for statistics, aimed at biological scientists. Subjects range from basic descriptive statistics through to complex linear modelling. The tutorials include text, videos, interactive coding exercises and multiple choice quizzes. The package also includes 19 datasets which are used in the tutorials.
Author: Rob Knell
Maintainer: Rob Knell <r.knell@qmul.ac.uk>

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Package flashlight updated to version 0.7.5 with previous version 0.7.4 dated 2021-01-10

Title: Shed Light on Black Box Machine Learning Models
Description: Shed light on black box machine learning models by the help of model performance, variable importance, global surrogate models, ICE profiles, partial dependence (Friedman J. H. (2001) <doi:10.1214/aos/1013203451>), accumulated local effects (Apley D. W. (2016) <arXiv:1612.08468>), further effects plots, scatter plots, interaction strength, and variable contribution breakdown (approximate SHAP) for single observations (Gosiewska and Biecek (2019) <arxiv:1903.11420>). All tools are implemented to work with case weights and allow for stratified analysis. Furthermore, multiple flashlights can be combined and analyzed together.
Author: Michael Mayer [aut, cre, cph]
Maintainer: Michael Mayer <mayermichael79@gmail.com>

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Package dipsaus updated to version 0.1.3 with previous version 0.1.2 dated 2021-01-10

Title: A Dipping Sauce for Data Analysis and Visualizations
Description: Works as an "add-on" to packages like 'shiny', 'future', as well as 'rlang', and provides utility functions. Just like dipping sauce adding flavors to potato chips or pita bread, 'dipsaus' for data analysis and visualizations adds handy functions and enhancements to popular packages. The goal is to provide simple solutions that are frequently asked for online, such as how to synchronize 'shiny' inputs without freezing the app, or how to get memory size on 'Linux' or 'MacOS' system. The enhancements roughly fall into these four categories: 1. 'shiny' input widgets; 2. high-performance computing using 'RcppParallel' and 'future' package; 3. modify R calls and convert among numbers, strings, and other objects. 4. utility functions to get system information such like CPU chip-set, memory limit, etc.
Author: Zhengjia Wang [aut, cre]
Maintainer: Zhengjia Wang <zhengjia.wang@rice.edu>

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Package glmaag (with last version 0.0.6) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2019-05-10 0.0.6

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Package LogrankPower (with last version 1.0.0) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2019-10-11 1.0.0

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Package mime updated to version 0.10 with previous version 0.9 dated 2020-02-04

Title: Map Filenames to MIME Types
Description: Guesses the MIME type from a filename extension using the data derived from /etc/mime.types in UNIX-type systems.
Author: Yihui Xie [aut, cre] (<https://orcid.org/0000-0003-0645-5666>), Jeffrey Horner [ctb], Beilei Bian [ctb]
Maintainer: Yihui Xie <xie@yihui.name>

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Package cachem updated to version 1.0.4 with previous version 1.0.3 dated 2021-02-04

Title: Cache R Objects with Automatic Pruning
Description: Key-value stores with automatic pruning. Caches can limit either their total size or the age of the oldest object (or both), automatically pruning objects to maintain the constraints.
Author: Winston Chang [aut, cre], RStudio [cph, fnd]
Maintainer: Winston Chang <winston@rstudio.com>

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Package RVA updated to version 0.0.4 with previous version 0.0.3 dated 2020-12-10

Title: RNAseq Visualization Automation
Description: Automate downstream visualization & pathway analysis in RNAseq analysis. 'RVA' is a collection of functions that efficiently visualize RNAseq differential expression analysis result from summary statistics tables. It also utilize the Fisher's exact test to evaluate gene set or pathway enrichment in a convenient and efficient manner.
Author: Xingpeng Li [aut, cre] (<https://orcid.org/0000-0002-1331-1225>)
Maintainer: Xingpeng Li <xingpeng.li@pfizer.com>

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Package GenEst updated to version 1.4.5.1 with previous version 1.4.5 dated 2020-11-21

Title: Generalized Mortality Estimator
Description: Command-line and 'shiny' GUI implementation of the GenEst models for estimating bird and bat mortality at wind and solar power facilities, following Dalthorp, et al. (2018) <doi:10.3133/tm7A2>.
Author: Daniel Dalthorp [aut, cre], Juniper Simonis [aut], Lisa Madsen [aut], Manuela Huso [aut], Paul Rabie [aut], Jeffrey Mintz [aut], Robert Wolpert [aut], Jared Studyvin [aut], Franzi Korner-Nievergelt [aut]
Maintainer: Daniel Dalthorp <ddalthorp@protonmail.com>

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Package fulltext updated to version 1.7.0 with previous version 1.6.0 dated 2020-10-19

Title: Full Text of 'Scholarly' Articles Across Many Data Sources
Description: Provides a single interface to many sources of full text 'scholarly' data, including 'Biomed Central', Public Library of Science, 'Pubmed Central', 'eLife', 'F1000Research', 'PeerJ', 'Pensoft', 'Hindawi', 'arXiv' 'preprints', and more. Functionality included for searching for articles, downloading full or partial text, downloading supplementary materials, converting to various data formats.
Author: Scott Chamberlain [aut, cre] (<https://orcid.org/0000-0003-1444-9135>), rOpenSci [fnd] (https://ropensci.org/)
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>

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Package DSpat (with last version 0.1.6) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2014-12-12 0.1.6
2012-11-08 0.1.5
2011-05-11 0.1.1
2009-05-06 0.1.0

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