Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-06-16 0.0-60
2017-08-03 0.0-51
2016-07-07 0.0-48
2016-06-29 0.0-47
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-06-21 0.0-41
2019-01-21 0.0-40
2019-01-16 0.0-39.1
2018-05-14 0.0-39
2018-01-23 0.0-38
2018-01-10 0.0-37
2017-04-05 0.0-35
Title: 'Rcpp' Bindings for the 'fast_float' Header-Only Library for
Number Parsing
Description: Converting ascii text into (floating-point) numeric values is a
very common problem. The 'fast_float' header-only C++ library by Daniel Lemire
does it very well and very fast at up to or over to 1 gigabyte per second as
described in more detail in <arXiv:2101.11408>. 'fast_float' is licensed under
the Apache 2.0 license and provided here for use by other R packages via a simple
'LinkingTo:' statement.
Author: Dirk Eddelbuettel, Brendan Knapp
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppFastFloat versions 0.0.1 dated 2021-02-05 and 0.0.2 dated 2021-02-13
ChangeLog | 25 +++++++++++++++++++++++++ DESCRIPTION | 15 ++++++--------- MD5 | 16 ++++++++++------ R/RcppExports.R | 35 +++++++++++++++++++++++++++++++++++ README.md | 16 +++++++++++----- inst/NEWS.Rd | 7 +++++++ inst/benchmark/comparison2.R |only inst/tinytest/test_asdouble2.R |only man/as.double2.Rd |only src/RcppExports.cpp | 17 +++++++++++++++++ src/as_double2.cpp |only 11 files changed, 111 insertions(+), 20 deletions(-)
Title: Mixture fMRI Clustering Analysis
Description: Utilizing model-based clustering (unsupervised)
for functional magnetic resonance imaging (fMRI) data.
The developed methods (Chen and Maitra (2021) <arXiv:2102.03639>)
include 2D and 3D clustering analyses
(for p-values with voxel locations) and
segmentation analyses (for p-values alone) for fMRI data where p-values
indicate significant level of activation responding to stimulate
of interesting. The analyses are mainly identifying active
voxel/signal associated with normal brain behaviors.
Analysis pipelines (R scripts) utilizing this package
(see examples in 'inst/workflow/') is also implemented with high
performance techniques.
Author: Wei-Chen Chen [aut, cre],
Ranjan Maitra [aut],
Dan Nettleton [ctb]
Maintainer: Wei-Chen Chen <wccsnow@gmail.com>
Diff between MixfMRI versions 0.1-0 dated 2018-04-26 and 0.1-1 dated 2021-02-13
MixfMRI-0.1-0/MixfMRI/README |only MixfMRI-0.1-0/MixfMRI/vignettes/MixfMRI-include/' |only MixfMRI-0.1-1/MixfMRI/ChangeLog | 6 MixfMRI-0.1-1/MixfMRI/DESCRIPTION | 13 + MixfMRI-0.1-1/MixfMRI/MD5 | 67 ++++------ MixfMRI-0.1-1/MixfMRI/R/gen_maitra.r | 12 + MixfMRI-0.1-1/MixfMRI/README.md |only MixfMRI-0.1-1/MixfMRI/inst/CITATION | 14 +- MixfMRI-0.1-1/MixfMRI/inst/doc/MixfMRI-guide.Rnw | 2 MixfMRI-0.1-1/MixfMRI/inst/doc/MixfMRI-guide.pdf |binary MixfMRI-0.1-1/MixfMRI/inst/workflow/simulation/create_simu.txt | 19 +- MixfMRI-0.1-1/MixfMRI/man/00_MixfMRI-package.Rd | 10 + MixfMRI-0.1-1/MixfMRI/man/11_d_control.Rd | 6 MixfMRI-0.1-1/MixfMRI/man/22_d_data.Rd | 6 MixfMRI-0.1-1/MixfMRI/man/a1_fclust.Rd | 10 + MixfMRI-0.1-1/MixfMRI/man/b1_initial.Rd | 10 + MixfMRI-0.1-1/MixfMRI/man/b2_algorithm.Rd | 10 + MixfMRI-0.1-1/MixfMRI/man/c1_test.Rd | 10 + MixfMRI-0.1-1/MixfMRI/man/d1_plot.Rd | 10 + MixfMRI-0.1-1/MixfMRI/man/d2_print.Rd | 6 MixfMRI-0.1-1/MixfMRI/man/e1_simulation.Rd | 13 + MixfMRI-0.1-1/MixfMRI/man/e2_density.Rd | 6 MixfMRI-0.1-1/MixfMRI/man/e3_smooth.Rd | 6 MixfMRI-0.1-1/MixfMRI/man/f1_lmt_I_pv.Rd | 10 + MixfMRI-0.1-1/MixfMRI/man/f2_logit_ETA.Rd | 10 + MixfMRI-0.1-1/MixfMRI/man/f3_post_I.Rd | 10 + MixfMRI-0.1-1/MixfMRI/man/f4_logor_stat.Rd | 6 MixfMRI-0.1-1/MixfMRI/man/u1_summarized.overlap.Rd | 6 MixfMRI-0.1-1/MixfMRI/man/u2_qvalue.Rd | 6 MixfMRI-0.1-1/MixfMRI/man/u3_fdr_ss.Rd | 6 MixfMRI-0.1-1/MixfMRI/man/u4_cba_cor.Rd | 10 + MixfMRI-0.1-1/MixfMRI/man/zz_internal.Rd | 6 MixfMRI-0.1-1/MixfMRI/vignettes/MixfMRI-guide.Rnw | 2 MixfMRI-0.1-1/MixfMRI/vignettes/MixfMRI-include/01-introduction.tex | 7 - MixfMRI-0.1-1/MixfMRI/vignettes/MixfMRI-include/02-examples.tex | 2 MixfMRI-0.1-1/MixfMRI/vignettes/MixfMRI-include/MixfMRI.bib | 17 +- 36 files changed, 249 insertions(+), 85 deletions(-)
Title: Inference Tools in Time Series Based on Record Statistics
Description: Statistical tools based on the probabilistic properties of the record
occurrence in a sequence of independent and identically distributed continuous
random variables. In particular, tools to prepare a time series as well as
distribution-free tests and graphical tools to visualize the record occurrence.
Author: Jorge Castillo-Mateo [aut, cre, cph]
(<https://orcid.org/0000-0003-3859-0248>),
Ana C. Cebrián [ths],
Jesús Asín [ths]
Maintainer: Jorge Castillo-Mateo <jorgecastillomateo@gmail.com>
Diff between RecordTest versions 1.0.1 dated 2020-10-05 and 2.0.0 dated 2021-02-13
RecordTest-1.0.1/RecordTest/R/L_global.test.R |only RecordTest-1.0.1/RecordTest/R/L_lm.test.R |only RecordTest-1.0.1/RecordTest/R/L_lr.test.R |only RecordTest-1.0.1/RecordTest/R/M.record.R |only RecordTest-1.0.1/RecordTest/R/N_normal.test.R |only RecordTest-1.0.1/RecordTest/R/P_chisq.test.R |only RecordTest-1.0.1/RecordTest/R/P_exactPB.test.R |only RecordTest-1.0.1/RecordTest/R/P_regression.plot.R |only RecordTest-1.0.1/RecordTest/R/P_regression.test.R |only RecordTest-1.0.1/RecordTest/data/TX_Zaragoza.RData |only RecordTest-1.0.1/RecordTest/data/ZaragozaSeries.RData |only RecordTest-1.0.1/RecordTest/man/L_global.test.Rd |only RecordTest-1.0.1/RecordTest/man/L_lm.test.Rd |only RecordTest-1.0.1/RecordTest/man/L_lr.test.Rd |only RecordTest-1.0.1/RecordTest/man/M.record.Rd |only RecordTest-1.0.1/RecordTest/man/MonteCarlo.Rd |only RecordTest-1.0.1/RecordTest/man/N_normal.test.Rd |only RecordTest-1.0.1/RecordTest/man/P_chisq.test.Rd |only RecordTest-1.0.1/RecordTest/man/P_exactPB.test.Rd |only RecordTest-1.0.1/RecordTest/man/P_regression.plot.Rd |only RecordTest-1.0.1/RecordTest/man/P_regression.test.Rd |only RecordTest-2.0.0/RecordTest/DESCRIPTION | 26 RecordTest-2.0.0/RecordTest/MD5 | 141 +- RecordTest-2.0.0/RecordTest/NAMESPACE | 41 RecordTest-2.0.0/RecordTest/R/I.record.R | 111 +- RecordTest-2.0.0/RecordTest/R/L.plot.R | 164 +-- RecordTest-2.0.0/RecordTest/R/L.record.R | 35 RecordTest-2.0.0/RecordTest/R/MonteCarlo.R | 79 - RecordTest-2.0.0/RecordTest/R/N.plot.R | 279 +++-- RecordTest-2.0.0/RecordTest/R/N.record.R | 43 RecordTest-2.0.0/RecordTest/R/N.test.R |only RecordTest-2.0.0/RecordTest/R/Olympic_records_200m.R |only RecordTest-2.0.0/RecordTest/R/R.record.R |only RecordTest-2.0.0/RecordTest/R/RecordTest.R | 239 +++- RecordTest-2.0.0/RecordTest/R/TX_Zaragoza-data.R | 25 RecordTest-2.0.0/RecordTest/R/ZaragozaSeries-data.R | 21 RecordTest-2.0.0/RecordTest/R/brown.method.R |only RecordTest-2.0.0/RecordTest/R/fisher.method.R |only RecordTest-2.0.0/RecordTest/R/foster.plot.R | 439 ++++---- RecordTest-2.0.0/RecordTest/R/foster.test.R | 650 +++++++----- RecordTest-2.0.0/RecordTest/R/global.test.R |only RecordTest-2.0.0/RecordTest/R/lr.test.R |only RecordTest-2.0.0/RecordTest/R/p.chisq.test.R |only RecordTest-2.0.0/RecordTest/R/p.plot.R |only RecordTest-2.0.0/RecordTest/R/p.record.R |only RecordTest-2.0.0/RecordTest/R/p.regression.test.R |only RecordTest-2.0.0/RecordTest/R/poisbinom.R |only RecordTest-2.0.0/RecordTest/R/rcrm.R |only RecordTest-2.0.0/RecordTest/R/records.R | 238 +++- RecordTest-2.0.0/RecordTest/R/score.test.R |only RecordTest-2.0.0/RecordTest/R/series_double.R | 36 RecordTest-2.0.0/RecordTest/R/series_record.R |only RecordTest-2.0.0/RecordTest/R/series_rev.R | 14 RecordTest-2.0.0/RecordTest/R/series_split.R | 31 RecordTest-2.0.0/RecordTest/R/series_ties.R |only RecordTest-2.0.0/RecordTest/R/series_uncor.R | 161 ++- RecordTest-2.0.0/RecordTest/R/series_untie.R | 70 - RecordTest-2.0.0/RecordTest/README.md | 8 RecordTest-2.0.0/RecordTest/build/vignette.rds |binary RecordTest-2.0.0/RecordTest/data/Olympic_records_200m.rda |only RecordTest-2.0.0/RecordTest/data/TX_Zaragoza.rda |only RecordTest-2.0.0/RecordTest/data/ZaragozaSeries.rda |only RecordTest-2.0.0/RecordTest/inst/NEWS.Rd | 101 + RecordTest-2.0.0/RecordTest/inst/doc/RecordTest.R | 127 +- RecordTest-2.0.0/RecordTest/inst/doc/RecordTest.Rmd | 167 ++- RecordTest-2.0.0/RecordTest/inst/doc/RecordTest.html | 713 +++++--------- RecordTest-2.0.0/RecordTest/man/I.record.Rd | 53 - RecordTest-2.0.0/RecordTest/man/L.plot.Rd | 49 RecordTest-2.0.0/RecordTest/man/L.record.Rd | 37 RecordTest-2.0.0/RecordTest/man/N.plot.Rd | 131 +- RecordTest-2.0.0/RecordTest/man/N.record.Rd | 40 RecordTest-2.0.0/RecordTest/man/N.test.Rd |only RecordTest-2.0.0/RecordTest/man/Olympic_records_200m.Rd |only RecordTest-2.0.0/RecordTest/man/R.record.Rd |only RecordTest-2.0.0/RecordTest/man/RecordTest-package.Rd | 239 +++- RecordTest-2.0.0/RecordTest/man/TX_Zaragoza.Rd | 25 RecordTest-2.0.0/RecordTest/man/ZaragozaSeries.Rd | 22 RecordTest-2.0.0/RecordTest/man/brown.method.Rd |only RecordTest-2.0.0/RecordTest/man/dot-MonteCarlo.Rd |only RecordTest-2.0.0/RecordTest/man/dpoisbinom.Rd |only RecordTest-2.0.0/RecordTest/man/fisher.method.Rd |only RecordTest-2.0.0/RecordTest/man/foster.plot.Rd | 93 + RecordTest-2.0.0/RecordTest/man/foster.test.Rd | 178 ++- RecordTest-2.0.0/RecordTest/man/global.test.Rd |only RecordTest-2.0.0/RecordTest/man/lr.test.Rd |only RecordTest-2.0.0/RecordTest/man/p.chisq.test.Rd |only RecordTest-2.0.0/RecordTest/man/p.plot.Rd |only RecordTest-2.0.0/RecordTest/man/p.record.Rd |only RecordTest-2.0.0/RecordTest/man/p.regression.test.Rd |only RecordTest-2.0.0/RecordTest/man/rcrm.Rd |only RecordTest-2.0.0/RecordTest/man/records.Rd | 84 + RecordTest-2.0.0/RecordTest/man/score.test.Rd |only RecordTest-2.0.0/RecordTest/man/series_double.Rd | 26 RecordTest-2.0.0/RecordTest/man/series_record.Rd |only RecordTest-2.0.0/RecordTest/man/series_rev.Rd | 14 RecordTest-2.0.0/RecordTest/man/series_split.Rd | 27 RecordTest-2.0.0/RecordTest/man/series_ties.Rd |only RecordTest-2.0.0/RecordTest/man/series_uncor.Rd | 83 + RecordTest-2.0.0/RecordTest/man/series_untie.Rd | 56 - RecordTest-2.0.0/RecordTest/vignettes/RecordTest.Rmd | 167 ++- 100 files changed, 3205 insertions(+), 2078 deletions(-)
Title: Miscellaneous Functions for Data Cleaning and Analysis
Description: Provides functions needed for data cleaning and
formatting and forms data cleaning and wrangling backend for the
following packages: 'ggstatsplot', 'pairwiseComparisons',
'statsExpressions', and 'tidyBF'.
Author: Indrajeet Patil [aut, cre, cph]
(<https://orcid.org/0000-0003-1995-6531>)
Maintainer: Indrajeet Patil <patilindrajeet.science@gmail.com>
Diff between ipmisc versions 5.0.2 dated 2021-01-08 and 6.0.0 dated 2021-02-13
ipmisc-5.0.2/ipmisc/R/specify_decimal_p.R |only ipmisc-5.0.2/ipmisc/man/specify_decimal_p.Rd |only ipmisc-5.0.2/ipmisc/tests/testthat/test-specify_decimal_p.R |only ipmisc-6.0.0/ipmisc/DESCRIPTION | 15 ipmisc-6.0.0/ipmisc/MD5 | 44 - ipmisc-6.0.0/ipmisc/NAMESPACE | 6 ipmisc-6.0.0/ipmisc/NEWS.md | 14 ipmisc-6.0.0/ipmisc/R/format_num.R |only ipmisc-6.0.0/ipmisc/R/global_vars.R | 2 ipmisc-6.0.0/ipmisc/R/long_to_wide_converter.R | 74 +- ipmisc-6.0.0/ipmisc/R/reexports.R | 4 ipmisc-6.0.0/ipmisc/R/stats_type_switch.R | 13 ipmisc-6.0.0/ipmisc/README.md | 4 ipmisc-6.0.0/ipmisc/build |only ipmisc-6.0.0/ipmisc/inst/WORDLIST | 2 ipmisc-6.0.0/ipmisc/man/figures |only ipmisc-6.0.0/ipmisc/man/format_num.Rd |only ipmisc-6.0.0/ipmisc/man/long_to_wide_converter.Rd | 148 ++-- ipmisc-6.0.0/ipmisc/man/reexports.Rd | 63 +- ipmisc-6.0.0/ipmisc/man/stats_type_switch.Rd | 10 ipmisc-6.0.0/ipmisc/tests/testthat/_snaps |only ipmisc-6.0.0/ipmisc/tests/testthat/test-format_num.R |only ipmisc-6.0.0/ipmisc/tests/testthat/test-long_to_wide_converter.R | 312 ---------- ipmisc-6.0.0/ipmisc/tests/testthat/test-stats_type_switch.R | 18 24 files changed, 254 insertions(+), 475 deletions(-)
Title: Convert Data to Memorable Phrases
Description: Convert keys and other values to memorable phrases.
Includes some methods to build lists of words.
Author: Max Candocia
Maintainer: Max Candocia <maxcandocia@gmail.com>
Diff between keyToEnglish versions 0.2.0 dated 2020-10-02 and 0.2.1 dated 2021-02-13
DESCRIPTION | 6 +++--- MD5 | 13 ++++++++----- NAMESPACE | 1 + NEWS.md | 7 +++++++ R/reconciliation.R |only README.md | 10 +++++----- inst/COPYRIGHTS | 2 +- man/reconcile_misspellings.Rd |only tests/testthat/test_reconcile.R |only 9 files changed, 25 insertions(+), 14 deletions(-)
Title: Locating Distributional Changes in Highly Dependent Time Series
Description: Provides algorithms to locate multiple
distributional change-points in piecewise stationary time series. The
algorithms are provably consistent, even in the presence of long-range
dependencies. Knowledge of the number of change-points is not
required. The code is written in Go and interfaced with R.
Author: Lukas Zierahn [cre, aut],
Azadeh Khaleghi [aut]
Maintainer: Lukas Zierahn <lukas@kappa-mm.de>
Diff between RChest versions 1.0.2 dated 2021-02-05 and 1.0.3 dated 2021-02-13
RChest-1.0.2/RChest/LICENSE |only RChest-1.0.3/RChest/DESCRIPTION | 23 +++++++++++------------ RChest-1.0.3/RChest/MD5 | 17 +++++++++-------- RChest-1.0.3/RChest/NEWS.md | 5 +++++ RChest-1.0.3/RChest/R/find_changepoints.R | 9 ++++++++- RChest-1.0.3/RChest/R/list_estimator.R | 5 +++-- RChest-1.0.3/RChest/README.md | 2 +- RChest-1.0.3/RChest/build |only RChest-1.0.3/RChest/inst |only RChest-1.0.3/RChest/man/find_changepoints.Rd | 7 ++++++- RChest-1.0.3/RChest/man/list_estimator.Rd | 5 ++++- 11 files changed, 47 insertions(+), 26 deletions(-)
Title: Correct Bias in DNA Methylation Analyses
Description: Implementation of the algorithms (with minor
modifications) to correct bias in quantitative DNA methylation
analyses as described by Moskalev et al. (2011)
<doi:10.1093/nar/gkr213>.
Author: Lorenz A. Kapsner [cre, aut, cph]
(<https://orcid.org/0000-0003-1866-860X>),
Evgeny A. Moskalev [aut]
Maintainer: Lorenz A. Kapsner <lorenz.kapsner@gmail.com>
Diff between rBiasCorrection versions 0.2.5 dated 2020-12-17 and 0.2.6 dated 2021-02-13
DESCRIPTION | 14 +-- MD5 | 43 +++++----- R/aggregated_input.R | 2 R/better_model.R | 2 R/biascorrection.R | 4 R/calibration_plot.R | 7 + R/clean_dt.R | 2 R/create_agg_df.R | 2 R/create_exampleplot.R | 2 R/create_plots.R | 2 R/createbarerrorplots.R | 7 + R/cubic.R | 2 R/hyperbolic.R | 2 R/plotting_utility.R | 2 R/regression_utility.R | 2 R/solving_equations.R | 2 R/statistics_list.R | 2 R/utils.R | 2 build/partial.rdb |only build/vignette.rds |binary inst/doc/rBiasCorrection_benchmarking.html | 110 +++++++++++++------------ inst/doc/rBiasCorrection_howto.html | 124 +++++++++++++++-------------- man/biascorrection.Rd | 2 23 files changed, 179 insertions(+), 158 deletions(-)
More information about rBiasCorrection at CRAN
Permanent link
Title: Tools for Survival Analysis and Data Science
Description: Collection of functions to improve work-flow in survival analysis and data science.
The package features include: the generation of balanced datasets, live retrieval of
protein coding genes from two public databases, generation of random
matrix based on covariance matrix, cache function to store function results.
This work was supported by two grants from the Portuguese Foundation for Science
and technology, and the EU Commission under SOUND project.
Author: André Veríssimo [aut, cre],
Susana Vinga [aut]
Maintainer: André Veríssimo <andre.verissimo@tecnico.ulisboa.pt>
Diff between loose.rock versions 1.0.16 dated 2019-05-31 and 1.1.0 dated 2021-02-13
loose.rock-1.0.16/loose.rock/R/sysdata.rda |only loose.rock-1.1.0/loose.rock/DESCRIPTION | 17 loose.rock-1.1.0/loose.rock/MD5 | 67 - loose.rock-1.1.0/loose.rock/NAMESPACE | 3 loose.rock-1.1.0/loose.rock/R/balanced_data.R | 35 loose.rock-1.1.0/loose.rock/R/cache.R | 361 ++++++-- loose.rock-1.1.0/loose.rock/R/coding.genes.R | 314 ++++++- loose.rock-1.1.0/loose.rock/R/color_symbol.R | 10 loose.rock-1.1.0/loose.rock/R/covariance.R | 13 loose.rock-1.1.0/loose.rock/R/gen_synthetic_data.R | 23 loose.rock-1.1.0/loose.rock/R/import_no_code.R | 1 loose.rock-1.1.0/loose.rock/R/loose.rock-package.r | 12 loose.rock-1.1.0/loose.rock/R/multiplot.R | 9 loose.rock-1.1.0/loose.rock/R/options.R | 11 loose.rock-1.1.0/loose.rock/build/vignette.rds |binary loose.rock-1.1.0/loose.rock/inst/doc/Overview.R | 87 +- loose.rock-1.1.0/loose.rock/inst/doc/Overview.Rmd | 109 +- loose.rock-1.1.0/loose.rock/inst/doc/Overview.html | 415 +++++----- loose.rock-1.1.0/loose.rock/man/balanced.cv.folds.Rd | 9 loose.rock-1.1.0/loose.rock/man/balanced.train.and.test.Rd | 6 loose.rock-1.1.0/loose.rock/man/build.function.digest.Rd |only loose.rock-1.1.0/loose.rock/man/calculate.result.Rd |only loose.rock-1.1.0/loose.rock/man/coding.genes.Rd | 18 loose.rock-1.1.0/loose.rock/man/coding.genes.ensembl.Rd |only loose.rock-1.1.0/loose.rock/man/create.directory.for.cache.Rd |only loose.rock-1.1.0/loose.rock/man/curl.workaround.Rd |only loose.rock-1.1.0/loose.rock/man/loose.rock.Rd | 12 loose.rock-1.1.0/loose.rock/man/loose.rock.options.Rd | 3 loose.rock-1.1.0/loose.rock/man/multiplot.Rd | 3 loose.rock-1.1.0/loose.rock/man/run.cache-function-method.Rd | 22 loose.rock-1.1.0/loose.rock/man/run.cache.Rd | 20 loose.rock-1.1.0/loose.rock/man/save.run.cache.Rd |only loose.rock-1.1.0/loose.rock/tests/testthat/test-colors_symbols.R | 8 loose.rock-1.1.0/loose.rock/tests/testthat/test-multiplot.R | 28 loose.rock-1.1.0/loose.rock/tests/testthat/test-run.cache.R | 331 ++++++- loose.rock-1.1.0/loose.rock/tests/testthat/test-synthetic.R | 6 loose.rock-1.1.0/loose.rock/tests/testthat/test_balanced_data.R | 22 loose.rock-1.1.0/loose.rock/vignettes/Overview.Rmd | 109 +- 38 files changed, 1470 insertions(+), 614 deletions(-)
Title: Pipe-Friendly Framework for Basic Statistical Tests
Description: Provides a simple and intuitive pipe-friendly framework, coherent with the 'tidyverse' design philosophy,
for performing basic statistical tests, including t-test, Wilcoxon test, ANOVA, Kruskal-Wallis and correlation analyses.
The output of each test is automatically transformed into a tidy data frame to facilitate visualization.
Additional functions are available for reshaping, reordering, manipulating and visualizing correlation matrix.
Functions are also included to facilitate the analysis of factorial experiments, including purely 'within-Ss' designs
(repeated measures), purely 'between-Ss' designs, and mixed 'within-and-between-Ss' designs.
It's also possible to compute several effect size metrics, including "eta squared" for ANOVA, "Cohen's d" for t-test and
'Cramer V' for the association between categorical variables.
The package contains helper functions for identifying univariate and multivariate outliers, assessing normality and homogeneity of variances.
Author: Alboukadel Kassambara [aut, cre]
Maintainer: Alboukadel Kassambara <alboukadel.kassambara@gmail.com>
Diff between rstatix versions 0.6.0 dated 2020-06-18 and 0.7.0 dated 2021-02-13
DESCRIPTION | 12 MD5 | 68 ++-- NAMESPACE | 3 NEWS.md | 27 + R/add_significance.R | 10 R/anova_test.R | 48 ++- R/cor_reshape.R | 7 R/dunn_test.R | 11 R/emmeans_test.R | 9 R/factorial_design.R | 3 R/get_pvalue_position.R | 282 +++++++++++------- R/get_test_label.R | 29 + R/levene_test.R | 14 R/p_value.R | 2 R/remove_ns.R |only README.md | 5 man/anova_test.Rd | 43 ++ man/cor_reshape.Rd | 3 man/dunn_test.Rd | 2 man/get_pvalue_position.Rd | 33 +- man/get_test_label.Rd | 18 + man/levene_test.Rd | 4 man/remove_ns.Rd |only tests/testthat/test-add_x_position.R |only tests/testthat/test-anova_test.R | 2 tests/testthat/test-get_n.R |only tests/testthat/test-levene_test.R |only tests/testthat/test-p_mark_significance.R |only tests/testthat/test-remove_ns.R |only tests/testthat/test-wilcox_test.R |only tools/README-comaprison-against-reference-group-1.png |binary tools/README-comaprison-against-reference-group-2.png |binary tools/README-comparison-against-base-mean-1.png |binary tools/README-custoize-p-value-labels-1.png |binary tools/README-grouped-two-sample-t-test-1.png |binary tools/README-paired-t-test-1.png |binary tools/README-pairwise-comparisons-1.png |binary tools/README-unnamed-chunk-10-1.png |binary tools/README-unpaired-two-sample-t-test-1.png |binary 39 files changed, 437 insertions(+), 198 deletions(-)
Title: Statistics Tutorials for Biologists
Description: Tutorials for statistics, aimed at biological scientists.
Subjects range from basic descriptive statistics
through to complex linear modelling. The tutorials
include text, videos, interactive coding exercises
and multiple choice quizzes. The package also
includes 19 datasets which are used in the
tutorials.
Author: Rob Knell
Maintainer: Rob Knell <r.knell@qmul.ac.uk>
Diff between Biostatistics versions 1.0.0 dated 2021-01-22 and 1.0.1 dated 2021-02-13
DESCRIPTION | 6 +- MD5 | 10 ++-- NEWS.md | 2 inst/doc/Biostatistics.html | 3 - inst/tutorials/00_Introduction/Introduction.Rmd | 13 +++-- inst/tutorials/07_Confidence_intervals/Confidence_intervals.Rmd | 24 ++++------ 6 files changed, 31 insertions(+), 27 deletions(-)
Title: Shed Light on Black Box Machine Learning Models
Description: Shed light on black box machine learning models by
the help of model performance, variable importance, global surrogate
models, ICE profiles, partial dependence (Friedman J. H. (2001)
<doi:10.1214/aos/1013203451>), accumulated local effects (Apley D. W.
(2016) <arXiv:1612.08468>), further effects plots, scatter plots,
interaction strength, and variable contribution breakdown (approximate
SHAP) for single observations (Gosiewska and Biecek (2019)
<arxiv:1903.11420>). All tools are implemented to work with case
weights and allow for stratified analysis. Furthermore, multiple
flashlights can be combined and analyzed together.
Author: Michael Mayer [aut, cre, cph]
Maintainer: Michael Mayer <mayermichael79@gmail.com>
Diff between flashlight versions 0.7.4 dated 2021-01-10 and 0.7.5 dated 2021-02-13
DESCRIPTION | 10 +++++----- MD5 | 16 ++++++++-------- NAMESPACE | 2 +- NEWS.md | 4 ++++ R/plot_counts.R | 4 ++-- README.md | 2 ++ inst/doc/caret.html | 4 ++-- inst/doc/flashlight.html | 6 +++--- inst/doc/mlr3.html | 4 ++-- 9 files changed, 29 insertions(+), 23 deletions(-)
Title: A Dipping Sauce for Data Analysis and Visualizations
Description: Works as an "add-on" to packages like 'shiny', 'future', as well as
'rlang', and provides utility functions. Just like dipping sauce adding
flavors to potato chips or pita bread, 'dipsaus' for data analysis and
visualizations adds handy functions and enhancements to popular packages.
The goal is to provide simple solutions that are frequently asked for
online, such as how to synchronize 'shiny' inputs without freezing the app,
or how to get memory size on 'Linux' or 'MacOS' system. The enhancements
roughly fall into these four categories: 1. 'shiny' input widgets; 2.
high-performance computing using 'RcppParallel' and 'future' package; 3.
modify R calls and convert among numbers, strings, and other objects. 4.
utility functions to get system information such like CPU chip-set, memory
limit, etc.
Author: Zhengjia Wang [aut, cre]
Maintainer: Zhengjia Wang <zhengjia.wang@rice.edu>
Diff between dipsaus versions 0.1.2 dated 2021-01-10 and 0.1.3 dated 2021-02-13
dipsaus-0.1.2/dipsaus/inst/doc/async_evaluator.R |only dipsaus-0.1.2/dipsaus/inst/doc/async_evaluator.Rmd |only dipsaus-0.1.2/dipsaus/inst/doc/async_evaluator.html |only dipsaus-0.1.2/dipsaus/vignettes/async_evaluator.Rmd |only dipsaus-0.1.3/dipsaus/DESCRIPTION | 11 +++---- dipsaus-0.1.3/dipsaus/MD5 | 28 +++++++++--------- dipsaus-0.1.3/dipsaus/NAMESPACE | 11 +++++++ dipsaus-0.1.3/dipsaus/NEWS.md | 9 +++++ dipsaus-0.1.3/dipsaus/R/fastqueue2.R |only dipsaus-0.1.3/dipsaus/R/lock.R | 2 + dipsaus-0.1.3/dipsaus/R/parallels-workers.R | 4 ++ dipsaus-0.1.3/dipsaus/R/screenshot.R | 19 ++++++++++++ dipsaus-0.1.3/dipsaus/R/systems.R | 5 ++- dipsaus-0.1.3/dipsaus/build/vignette.rds |binary dipsaus-0.1.3/dipsaus/inst/doc/r_expr_addons.html | 8 ++--- dipsaus-0.1.3/dipsaus/inst/doc/utility_functions.html | 10 +++--- dipsaus-0.1.3/dipsaus/man/base64_to_string.Rd |only dipsaus-0.1.3/dipsaus/man/fastqueue2.Rd |only dipsaus-0.1.3/dipsaus/man/list_to_fastqueue2.Rd |only 19 files changed, 78 insertions(+), 29 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-05-10 0.0.6
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-10-11 1.0.0
Title: Map Filenames to MIME Types
Description: Guesses the MIME type from a filename extension using the data
derived from /etc/mime.types in UNIX-type systems.
Author: Yihui Xie [aut, cre] (<https://orcid.org/0000-0003-0645-5666>),
Jeffrey Horner [ctb],
Beilei Bian [ctb]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between mime versions 0.9 dated 2020-02-04 and 0.10 dated 2021-02-13
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NEWS | 6 ++++++ R/mime.R | 1 + README.md | 8 +++++--- 5 files changed, 20 insertions(+), 11 deletions(-)
Title: Cache R Objects with Automatic Pruning
Description: Key-value stores with automatic pruning. Caches can limit
either their total size or the age of the oldest object (or both),
automatically pruning objects to maintain the constraints.
Author: Winston Chang [aut, cre],
RStudio [cph, fnd]
Maintainer: Winston Chang <winston@rstudio.com>
Diff between cachem versions 1.0.3 dated 2021-02-04 and 1.0.4 dated 2021-02-13
cachem-1.0.3/cachem/R/cache-memory.R |only cachem-1.0.4/cachem/DESCRIPTION | 6 cachem-1.0.4/cachem/MD5 | 16 +- cachem-1.0.4/cachem/NEWS.md | 5 cachem-1.0.4/cachem/R/cache-layered.R | 2 cachem-1.0.4/cachem/R/cache-mem.R |only cachem-1.0.4/cachem/README.md | 24 ++- cachem-1.0.4/cachem/man/cache_layered.Rd | 2 cachem-1.0.4/cachem/man/cache_mem.Rd | 4 cachem-1.0.4/cachem/tests/testthat/test-cache-mem.R | 127 +++++++++++++++++++- 10 files changed, 157 insertions(+), 29 deletions(-)
Title: RNAseq Visualization Automation
Description: Automate downstream visualization & pathway analysis in RNAseq analysis. 'RVA' is a collection of functions that efficiently visualize RNAseq differential expression analysis result from summary statistics tables. It also utilize the Fisher's exact test to evaluate gene set or pathway enrichment in a convenient and efficient manner.
Author: Xingpeng Li [aut, cre] (<https://orcid.org/0000-0002-1331-1225>)
Maintainer: Xingpeng Li <xingpeng.li@pfizer.com>
Diff between RVA versions 0.0.3 dated 2020-12-10 and 0.0.4 dated 2021-02-13
DESCRIPTION | 6 MD5 | 22 NAMESPACE | 1 R/plot_cutoff.R | 708 ++++++++++---------- R/plot_pathway.R | 1833 ++++++++++++++++++++++++++-------------------------- R/plot_qq.R | 224 +++--- R/plot_volcano.R | 29 README.md | 1447 ++++++++++++++++++++++------------------- inst/doc/RVA.Rmd | 1828 +++++++++++++++++++++++++-------------------------- inst/doc/RVA.html | 198 +---- man/plot_pathway.Rd | 2 vignettes/RVA.Rmd | 1828 +++++++++++++++++++++++++-------------------------- 12 files changed, 4117 insertions(+), 4009 deletions(-)
Title: Generalized Mortality Estimator
Description: Command-line and 'shiny' GUI implementation of the GenEst models for estimating bird and bat mortality at wind and solar power facilities, following Dalthorp, et al. (2018) <doi:10.3133/tm7A2>.
Author: Daniel Dalthorp [aut, cre],
Juniper Simonis [aut],
Lisa Madsen [aut],
Manuela Huso [aut],
Paul Rabie [aut],
Jeffrey Mintz [aut],
Robert Wolpert [aut],
Jared Studyvin [aut],
Franzi Korner-Nievergelt [aut]
Maintainer: Daniel Dalthorp <ddalthorp@protonmail.com>
Diff between GenEst versions 1.4.5 dated 2020-11-21 and 1.4.5.1 dated 2021-02-13
GenEst-1.4.5.1/GenEst/DESCRIPTION | 10 GenEst-1.4.5.1/GenEst/MD5 | 66 GenEst-1.4.5.1/GenEst/R/carcass_persistence_functions.R | 14 GenEst-1.4.5.1/GenEst/build/vignette.rds |binary GenEst-1.4.5.1/GenEst/inst/doc/GenEstGUI.html | 286 --- GenEst-1.4.5.1/GenEst/inst/doc/command-line-example.R | 60 GenEst-1.4.5.1/GenEst/inst/doc/command-line-example.Rmd | 1 GenEst-1.4.5.1/GenEst/inst/doc/command-line-example.html | 1264 +++++-------- GenEst-1.4.5.1/GenEst/inst/doc/solar-examples.R | 58 GenEst-1.4.5.1/GenEst/inst/doc/solar-examples.html | 883 +++------ GenEst-1.4.5.1/GenEst/inst/doc/wind-examples.R | 2 GenEst-1.4.5.1/GenEst/inst/doc/wind-examples.html | 1392 ++++++--------- GenEst-1.4.5.1/GenEst/man/GenEst.Rd | 1 GenEst-1.4.5.1/GenEst/man/SEfig.Rd | 14 GenEst-1.4.5.1/GenEst/man/calcSplits.Rd | 11 GenEst-1.4.5.1/GenEst/man/cpm.Rd | 50 GenEst-1.4.5.1/GenEst/man/estM.Rd | 21 GenEst-1.4.5.1/GenEst/man/estg.Rd | 17 GenEst-1.4.5.1/GenEst/man/estgGenericSize.Rd | 10 GenEst-1.4.5.1/GenEst/man/mock.Rd | 6 GenEst-1.4.5.1/GenEst/man/pkLogLik.Rd | 12 GenEst-1.4.5.1/GenEst/man/pkm.Rd | 55 GenEst-1.4.5.1/GenEst/man/plot.pkmSet.Rd | 3 GenEst-1.4.5.1/GenEst/man/plot.splitFull.Rd | 3 GenEst-1.4.5.1/GenEst/man/qpk.Rd | 2 GenEst-1.4.5.1/GenEst/man/solar_PV.Rd | 6 GenEst-1.4.5.1/GenEst/man/solar_powerTower.Rd | 6 GenEst-1.4.5.1/GenEst/man/solar_trough.Rd | 6 GenEst-1.4.5.1/GenEst/man/wind_RP.Rd | 6 GenEst-1.4.5.1/GenEst/man/wind_RPbat.Rd | 6 GenEst-1.4.5.1/GenEst/man/wind_cleared.Rd | 6 GenEst-1.4.5.1/GenEst/vignettes/command-line-example.Rmd | 1 GenEst-1.4.5/GenEst/tests |only 33 files changed, 1868 insertions(+), 2410 deletions(-)
Title: Full Text of 'Scholarly' Articles Across Many Data Sources
Description: Provides a single interface to many sources of full text
'scholarly' data, including 'Biomed Central', Public Library of
Science, 'Pubmed Central', 'eLife', 'F1000Research', 'PeerJ',
'Pensoft', 'Hindawi', 'arXiv' 'preprints', and more. Functionality
included for searching for articles, downloading full or partial
text, downloading supplementary materials, converting to various
data formats.
Author: Scott Chamberlain [aut, cre] (<https://orcid.org/0000-0003-1444-9135>),
rOpenSci [fnd] (https://ropensci.org/)
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between fulltext versions 1.6.0 dated 2020-10-19 and 1.7.0 dated 2021-02-13
DESCRIPTION | 12 LICENSE | 2 MD5 | 61 NAMESPACE | 7 NEWS.md | 19 R/as_ftdmurl.R |only R/ft_cr_links.R |only R/ft_extract.R | 38 R/ft_get.R | 32 R/ft_search.R | 30 R/ftdoi_publisher_plugins.R | 5 R/fulltext-package.R | 211 R/fulltext-warnings.R | 68 R/plugins_get.R | 60 R/plugins_get_links.R | 4 R/plugins_links.R | 2 R/plugins_search.R | 43 man/as_ftdmurl.Rd |only man/ft_cr_links.Rd |only man/ft_get-warnings.Rd | 11 man/ft_get.Rd | 21 man/ft_search.Rd | 34 man/fulltext-package.Rd | 68 tests/files |only tests/fixtures/fat_cat_search.yml | 68 tests/fixtures/fat_cat_search_one.yml | 70 tests/fixtures/ft_get_wiley.yml |only tests/fixtures/ft_search_entrez.yml |11994 ---------------------------------- tests/fixtures/get_publisher2.yml | 137 tests/testthat/helper-fulltext.R | 17 tests/testthat/test-cache_file_info.R | 2 tests/testthat/test-ft_collect.R | 14 tests/testthat/test-ft_get.r | 87 tests/testthat/test-ftd_doi.R | 4 34 files changed, 877 insertions(+), 12244 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-12-12 0.1.6
2012-11-08 0.1.5
2011-05-11 0.1.1
2009-05-06 0.1.0