Title: Dictionary-Based Sentiment Analysis
Description: Performs a sentiment analysis of textual contents in R. This implementation
utilizes various existing dictionaries, such as Harvard IV, or finance-specific
dictionaries. Furthermore, it can also create customized dictionaries. The latter
uses LASSO regularization as a statistical approach to select relevant terms based on
an exogenous response variable.
Author: Nicolas Proellochs [aut, cre],
Stefan Feuerriegel [aut]
Maintainer: Nicolas Proellochs <nicolas@nproellochs.com>
Diff between SentimentAnalysis versions 1.3-3 dated 2019-03-26 and 1.3-4 dated 2021-02-17
DESCRIPTION | 20 LICENSE | 2 MD5 | 67 +- NEWS | 8 R/SentimentDictionary.R | 7 R/analyzeSentiment.R | 4 R/data.R | 2 R/generateDictionary.R | 7 README.md | 2 build/partial.rdb |only build/vignette.rds |binary inst/doc/SentimentAnalysis.R | 40 - inst/doc/SentimentAnalysis.Rmd | 6 inst/doc/SentimentAnalysis.html | 922 +++++++++++++++-------------- man/DictionaryGI.Rd | 4 man/DictionaryHE.Rd | 4 man/DictionaryLM.Rd | 4 man/SentimentAnalysis.Rd | 1 man/SentimentDictionaryWeighted.Rd | 15 man/analyzeSentiment.Rd | 72 +- man/countWords.Rd | 54 + man/enetEstimation.Rd | 8 man/generateDictionary.Rd | 113 ++- man/lassoEstimation.Rd | 8 man/loadImdb.Rd | 2 man/plot.SentimentDictionaryWeighted.Rd | 3 man/plotSentiment.Rd | 9 man/plotSentimentResponse.Rd | 9 man/predict.SentimentDictionaryWeighted.Rd | 10 man/preprocessCorpus.Rd | 9 man/ridgeEstimation.Rd | 8 man/spikeslabEstimation.Rd | 8 man/toDocumentTermMatrix.Rd | 12 tests/testthat/test.analyzeSentiment.R | 2 vignettes/SentimentAnalysis.Rmd | 6 35 files changed, 825 insertions(+), 623 deletions(-)
More information about SentimentAnalysis at CRAN
Permanent link
Title: Data Sets for 'specmine'
Description: Provides the data sets used to exemplify 'specmine'. The data sets were formerly distributed with 'specmine', however they exceed current CRAN policy for package size.
Author: Christopher Costa <chrisbcl@hotmail.com> [aut],
Marcelo Maraschin <mtocsy@gmail.com> [aut],
Miguel Rocha <mrocha@di.uminho.pt> [aut, cre],
Sara Cardoso <saracardoso501@gmail.com> [aut],
Telma Afonso <telma.afonso94@gmail.com> [aut],
C. Beleites [cph],
Jie Hao [cph],
Bruno Pereira <pereirinha_bp@hotmail.com> [aut]
Maintainer: Miguel Rocha <mrocha@di.uminho.pt>
Diff between specmine.datasets versions 0.0.1 dated 2020-11-20 and 0.0.2 dated 2021-02-17
DESCRIPTION | 10 ++- MD5 | 20 +++---- R/data.R | 128 +++++++++++++++++++++++++++++++++++++++++++--- README.md | 42 ++++++++++++--- data/spectra_options.rda |only data/spinalCord.rda |binary man/cachexia.Rd | 21 +++---- man/cassavaPPD.Rd | 21 +++---- man/propolis.Rd | 7 +- man/propolisSampleList.Rd | 7 +- man/spectra_options.Rd |only man/spinalCord.Rd | 7 +- 12 files changed, 211 insertions(+), 52 deletions(-)
More information about specmine.datasets at CRAN
Permanent link
Title: Raw Accelerometer Data Analysis
Description: A tool to process and analyse data collected with wearable raw acceleration sensors as described in Migueles and colleagues (JMPB 2019), and van Hees and colleagues (JApplPhysiol 2014; PLoSONE 2015). The package has been developed and tested for binary data from 'GENEActiv' <https://www.activinsights.com/> and GENEA devices (not for sale), .csv-export data from 'Actigraph' <https://actigraphcorp.com> devices, and .cwa and .wav-format data from 'Axivity' <https://axivity.com>. These devices are currently widely used in research on human daily physical activity. Further, the package can handle accelerometer data file from any other sensor brand providing that the data is stored in csv format and has either no header or a two column header. Also the package allows for external function embedding.
Author: Vincent T van Hees [aut, cre],
Zhou Fang [ctb],
Jing Hua Zhao [ctb],
Joe Heywood [ctb],
Evgeny Mirkes [ctb],
Severine Sabia [ctb],
Joan Capdevila Pujol [ctb],
Jairo H Migueles [ctb],
Matthew R Patterson [ctb],
Dan Jackson [ctb]
Maintainer: Vincent T van Hees <v.vanhees@accelting.com>
Diff between GGIR versions 2.2-0 dated 2020-11-22 and 2.3-0 dated 2021-02-17
DESCRIPTION | 10 MD5 | 84 - NAMESPACE | 2 R/g.IVIS.R | 22 R/g.analyse.R | 2 R/g.analyse.perfile.R | 11 R/g.applymetrics4sg.R |only R/g.getmeta.R | 213 ++ R/g.inspectfile.R | 8 R/g.part1.R | 9 R/g.part2.R | 4 R/g.part5.R | 2 R/g.part5.addfirstwake.R | 6 R/g.part5.fixmissingnight.R | 26 R/g.report.part2.R | 25 R/g.shell.GGIR.R | 19 R/g.sib.sum.R | 136 - R/separategravity.R |only README.md | 18 build/vignette.rds |binary inst/NEWS.Rd | 28 inst/doc/ExternalFunction.Rmd | 12 inst/doc/ExternalFunction.pdf |binary inst/doc/GGIR.R | 6 inst/doc/GGIR.Rmd | 43 inst/doc/GGIR.html | 1998 ++++++++++++++++++++++------ inst/doc/SensorFusionWithGGIR.R |only inst/doc/SensorFusionWithGGIR.Rmd |only inst/doc/SensorFusionWithGGIR.html |only man/GGIR-package.Rd | 4 man/g.IVIS.Rd | 21 man/g.analyse.Rd | 2 man/g.applymetrics4gs.Rd |only man/g.convert.part2.long.Rd | 2 man/g.getmeta.Rd | 24 man/g.impute.Rd | 3 man/g.part1.Rd | 19 man/g.part2.Rd | 8 man/separategravity.Rd |only tests/testthat/test_chainof5parts.R | 6 tests/testthat/test_g.IVIS.R |only tests/testthat/test_greadaccfile.R | 5 tests/testthat/test_part1_with_allmetrics.R | 2 tests/testthat/test_separategravity.R |only vignettes/ExternalFunction.Rmd | 12 vignettes/GGIR-MASTERLOGO-RGB.png |only vignettes/GGIR.Rmd | 43 vignettes/LICENSE_images |only vignettes/SensorFusionWithGGIR.Rmd |only 49 files changed, 2123 insertions(+), 712 deletions(-)
Title: Tools to Create, Modify and Manage 'CWB' Corpora
Description: The 'Corpus Workbench' ('CWB', <http://cwb.sourceforge.net/>) offers a classic and mature
approach for working with large, linguistically and structurally annotated corpora. The 'CWB'
is memory efficient and its design makes running queries fast (Evert and Hardie 2011,
<http://www.stefan-evert.de/PUB/EvertHardie2011.pdf>). The 'cwbtools' package offers
pure R tools to create indexed corpus files as well as high-level wrappers for the original C
implementation of CWB as exposed by the 'RcppCWB' package
<https://CRAN.R-project.org/package=RcppCWB>. Additional functionality to add and
modify annotations of corpora from within R makes working with CWB indexed corpora
much more flexible and convenient. The 'cwbtools' package in combination with the R packages
'RcppCWB' (<https://CRAN.R-project.org/package=RcppCWB>) and 'polmineR'
(<https://CRAN.R-project.org/package=polmineR>) offers a lightweight infrastructure
to support the combination of quantitative and qualitative approaches for working
with textual data.
Author: Andreas Blaette [aut, cre],
Christoph Leonhardt [ctb]
Maintainer: Andreas Blaette <andreas.blaette@uni-due.de>
Diff between cwbtools versions 0.3.1 dated 2020-07-21 and 0.3.2 dated 2021-02-17
DESCRIPTION | 14 +- MD5 | 59 ++++++----- NAMESPACE | 5 NEWS.md | 35 ++++++ R/CorpusData.R | 7 - R/corpus.R | 170 ++++++++++++++++++++++++++------- R/cwb.R | 16 +-- R/cwbtools.R | 34 ------ R/encoding.R | 4 R/p_attribute.R | 49 +++++++-- R/s_attribute.R | 8 + build/vignette.rds |binary inst/doc/europarl.Rmd | 4 inst/doc/europarl.html | 214 +++++++++++++++++++++++++++--------------- inst/doc/opennlp.R |only inst/doc/opennlp.Rmd |only inst/doc/opennlp.html |only inst/doc/sentences.R | 106 +++++++++++--------- inst/doc/sentences.Rmd | 104 ++++++++++++-------- inst/doc/sentences.html | 182 +++++++++++++++++++++++++++-------- inst/doc/vignette.R | 4 inst/doc/vignette.Rmd | 4 inst/doc/vignette.html | 113 ++++++++++++++++++++-- man/corpus_utils.Rd | 23 +++- man/cwb.Rd | 11 +- man/cwbtools-package.Rd | 35 ------ man/p_attribute_encode.Rd | 19 ++- tests/testthat/test_encode.R |only tests/testthat/test_install.R | 60 +++++++++++ vignettes/europarl.Rmd | 4 vignettes/opennlp.Rmd |only vignettes/sentences.Rmd | 104 ++++++++++++-------- vignettes/vignette.Rmd | 4 33 files changed, 957 insertions(+), 435 deletions(-)
Title: Interface to the CIMIS Web API
Description: Connect to the California Irrigation Management
Information System (CIMIS) Web API. See the CIMIS main page
<https://cimis.water.ca.gov> and web API documentation
<https://et.water.ca.gov> for more information.
Author: Michael Koohafkan [aut, cre]
Maintainer: Michael Koohafkan <michael.koohafkan@gmail.com>
Diff between cimir versions 0.4-0 dated 2020-01-22 and 0.4-1 dated 2021-02-17
DESCRIPTION | 8 MD5 | 59 +++--- NAMESPACE | 5 NEWS.md | 7 R/query.r | 69 ++++--- R/util.r | 91 ++++++--- build/vignette.rds |binary inst/doc/helper_functions.html | 210 ++++++++++++---------- inst/doc/helper_functions.rmd | 2 inst/doc/quickstart.Rmd | 10 - inst/doc/quickstart.html | 368 +++++++++++++++++++++------------------- man/as_tibble_fix.Rd |only man/basic_query.Rd | 34 +-- man/bind_records.Rd | 36 +-- man/cimir-defunct.Rd | 136 +++++++------- man/cimir.Rd | 82 ++++---- man/cimir_handle.Rd | 22 +- man/cimis_compass_to_degrees.Rd | 60 +++--- man/cimis_data.Rd | 136 +++++++------- man/cimis_degrees_to_compass.Rd | 62 +++--- man/cimis_flags.Rd | 59 +++--- man/cimis_format_location.Rd | 62 +++--- man/cimis_items.Rd | 40 ++-- man/cimis_split_query.Rd | 120 ++++++------- man/cimis_station.Rd | 68 +++---- man/cimis_to_datetime.Rd | 60 +++--- man/dataitems.Rd | 28 +-- man/record_to_df.Rd | 36 +-- man/set_key.Rd | 54 ++--- vignettes/helper_functions.rmd | 2 vignettes/quickstart.Rmd | 10 - 31 files changed, 1014 insertions(+), 922 deletions(-)
Title: Empirical Small Telescopes Analysis
Description: We provide functions to perform an empirical small telescopes
analysis. This package contains 2 functions, SmallTelescopes() and
EstimatePower(). Users only need to call SmallTelescopes() to conduct
the analysis. For more information on small telescopes analysis see
Uri Simonsohn (2015) <doi:10.1177/0956797614567341>.
Author: John Ruscio [aut, cre],
Samantha Costigan [ctb]
Maintainer: John Ruscio <ruscio@tcnj.edu>
Diff between RSmallTelescopes versions 1.0.3 dated 2021-01-22 and 1.0.4 dated 2021-02-17
RSmallTelescopes-1.0.3/RSmallTelescopes/man/SimulatePower.Rd |only RSmallTelescopes-1.0.4/RSmallTelescopes/DESCRIPTION | 10 - RSmallTelescopes-1.0.4/RSmallTelescopes/MD5 | 10 - RSmallTelescopes-1.0.4/RSmallTelescopes/NAMESPACE | 2 RSmallTelescopes-1.0.4/RSmallTelescopes/R/empiricalsmalltelescopes.R | 84 ++++------ RSmallTelescopes-1.0.4/RSmallTelescopes/man/EstimatePower.Rd | 6 RSmallTelescopes-1.0.4/RSmallTelescopes/man/SmallTelescopes.Rd |only 7 files changed, 53 insertions(+), 59 deletions(-)
More information about RSmallTelescopes at CRAN
Permanent link
Title: Generalized Pathmox Approach Segmentation Tree Analysis
Description: It provides an interesting solution for handling a high number
of segmentation variables in partial least squares structural equation
modeling. The package implements the "Pathmox" algorithm (Lamberti, Sanchez,
and Aluja,(2016)<doi:10.1002/asmb.2168>) including the F-coefficient
test (Lamberti, Sanchez, and Aluja,(2017)<doi:10.1002/asmb.2270>)
to detect the path coefficients responsible for the identified differences),
the hybrid multi-group approach (Lamberti (2021)
<doi:10.1007/s11135-021-01096-9>) and the classical multi-group
approaches (parametric and permutation approaches). The package also
includes an extension of the "Pathmox" algorithm to the case of
linear regression models.
Author: Giuseppe Lamberti [aut, cre]
Maintainer: Giuseppe Lamberti <giuseppelamb@hotmail.com>
Diff between genpathmox versions 0.5 dated 2020-11-16 and 0.6 dated 2021-02-17
genpathmox-0.5/genpathmox/R/13_fun_Fb.test.pls.R |only genpathmox-0.5/genpathmox/R/14_fun_Fc.test.pls.R |only genpathmox-0.5/genpathmox/R/23_fun_fblock.tree.pls.R |only genpathmox-0.5/genpathmox/R/24_fun_fcoef.tree.pls.R |only genpathmox-0.5/genpathmox/R/25_fun_mox.tree.pls.R |only genpathmox-0.5/genpathmox/R/26_fun_info.mox.pls.R |only genpathmox-0.5/genpathmox/R/27_fun_pls.pathmox.R |only genpathmox-0.5/genpathmox/R/28_fun_invariance.R |only genpathmox-0.5/genpathmox/R/29_fun_pls.treemodel.R |only genpathmox-0.5/genpathmox/R/30_fun_invariance_test.R |only genpathmox-0.5/genpathmox/R/31_fun_splitopt.reg.R |only genpathmox-0.5/genpathmox/R/32_fun_all.part.reg.R |only genpathmox-0.5/genpathmox/R/33_fun_partopt.reg.R |only genpathmox-0.5/genpathmox/R/34_fun_F.data.reg.R |only genpathmox-0.5/genpathmox/R/35_fun_Fg.test.reg.R |only genpathmox-0.5/genpathmox/R/36_fun_Fc.test.reg.R |only genpathmox-0.5/genpathmox/R/37_fun_test.particion.reg.R |only genpathmox-0.5/genpathmox/R/38_fun_printTree.R |only genpathmox-0.5/genpathmox/R/39_fun_fglobal.tree.R |only genpathmox-0.5/genpathmox/R/40_fun_fcoef.tree.reg.R |only genpathmox-0.5/genpathmox/R/41_fun_mox.tree.R |only genpathmox-0.5/genpathmox/R/42_fun_info.mox.reg.R |only genpathmox-0.5/genpathmox/R/43_fun_reg.pathmox.R |only genpathmox-0.5/genpathmox/R/44_fun_reg.treemodel.R |only genpathmox-0.5/genpathmox/R/fibtele-data.R |only genpathmox-0.5/genpathmox/R/print_print.xtree.pls.R |only genpathmox-0.5/genpathmox/R/print_print.xtree.reg.R |only genpathmox-0.5/genpathmox/data/fibtele.rda |only genpathmox-0.5/genpathmox/man/Fb.test.pls.Rd |only genpathmox-0.5/genpathmox/man/fblock.tree.pls.Rd |only genpathmox-0.5/genpathmox/man/fibtele.Rd |only genpathmox-0.5/genpathmox/man/info.pls_class.Rd |only genpathmox-0.5/genpathmox/man/invariance.Rd |only genpathmox-0.5/genpathmox/man/invariance_test.Rd |only genpathmox-0.5/genpathmox/man/print.xtree.pls.Rd |only genpathmox-0.5/genpathmox/man/print.xtree.reg.Rd |only genpathmox-0.5/genpathmox/man/reg.treemodel.Rd |only genpathmox-0.6/genpathmox/DESCRIPTION | 29 - genpathmox-0.6/genpathmox/MD5 | 166 ++++------ genpathmox-0.6/genpathmox/NAMESPACE | 7 genpathmox-0.6/genpathmox/R/10_fun_partopt.pls.R | 130 +++---- genpathmox-0.6/genpathmox/R/11_fun_F.data.pls.R | 81 ++-- genpathmox-0.6/genpathmox/R/12_fun_Fg.test.pls.R | 48 +- genpathmox-0.6/genpathmox/R/13_fun_Fc.test.pls.R |only genpathmox-0.6/genpathmox/R/15_fun_test.partition.pls.R | 38 -- genpathmox-0.6/genpathmox/R/16_fun_percent.node.R | 8 genpathmox-0.6/genpathmox/R/17_fun_showDeepth.R | 4 genpathmox-0.6/genpathmox/R/18_fun_root.tree.R | 22 - genpathmox-0.6/genpathmox/R/19_fun_terminal.tree.R | 56 +-- genpathmox-0.6/genpathmox/R/1_fun_blockdiag.R | 54 +-- genpathmox-0.6/genpathmox/R/20_fun_nodes.tree.R | 40 +- genpathmox-0.6/genpathmox/R/21_fun_candidates.tree.R | 46 +- genpathmox-0.6/genpathmox/R/22_fun_fglobal.tree.pls.R | 50 +-- genpathmox-0.6/genpathmox/R/23_fun_fcoef.tree.pls.R |only genpathmox-0.6/genpathmox/R/24_fun_mox.tree.pls.R |only genpathmox-0.6/genpathmox/R/25_fun_info.mox.pls.R |only genpathmox-0.6/genpathmox/R/26_fun_pls.pathmox.R |only genpathmox-0.6/genpathmox/R/27_fun_pls.treemodel.R |only genpathmox-0.6/genpathmox/R/28_fun_pls.treenode.R |only genpathmox-0.6/genpathmox/R/29_fun_multigroup.R |only genpathmox-0.6/genpathmox/R/2_fun_comb.R | 46 +- genpathmox-0.6/genpathmox/R/30_fun_splitopt.reg.R |only genpathmox-0.6/genpathmox/R/31_fun_all.part.reg.R |only genpathmox-0.6/genpathmox/R/32_fun_partopt.reg.R |only genpathmox-0.6/genpathmox/R/33_fun_F.data.reg.R |only genpathmox-0.6/genpathmox/R/34_fun_Fg.test.reg.R |only genpathmox-0.6/genpathmox/R/35_fun_Fc.test.reg.R |only genpathmox-0.6/genpathmox/R/36_fun_test.particion.reg.R |only genpathmox-0.6/genpathmox/R/37_fun_printTree.R |only genpathmox-0.6/genpathmox/R/38_fun_fglobal.tree.R |only genpathmox-0.6/genpathmox/R/39_fun_fcoef.tree.reg.R |only genpathmox-0.6/genpathmox/R/3_fun_partition.R | 122 +++---- genpathmox-0.6/genpathmox/R/40_fun_mox.tree.R |only genpathmox-0.6/genpathmox/R/41_fun_info.mox.reg.R |only genpathmox-0.6/genpathmox/R/42_fun_reg.pathmox.R |only genpathmox-0.6/genpathmox/R/4_fun_build.block.R | 109 +++--- genpathmox-0.6/genpathmox/R/5_fun_bin.levels.R | 23 - genpathmox-0.6/genpathmox/R/6_fun_element.R | 33 -- genpathmox-0.6/genpathmox/R/7_fun_f.min.R | 27 - genpathmox-0.6/genpathmox/R/8_fun_splitopt.pls.R | 233 +++++++------- genpathmox-0.6/genpathmox/R/9_fun_all.part.pls.R | 91 ++--- genpathmox-0.6/genpathmox/R/class1_info.pls.R | 28 - genpathmox-0.6/genpathmox/R/class2_node.R | 16 genpathmox-0.6/genpathmox/R/class3_tree.R | 12 genpathmox-0.6/genpathmox/R/fibtele_bank-data.R |only genpathmox-0.6/genpathmox/R/plot_plot.xtree.pls.R |only genpathmox-0.6/genpathmox/R/summary_summary.xtree.pls.R | 261 +++++++--------- genpathmox-0.6/genpathmox/data/csibank.rda |only genpathmox-0.6/genpathmox/man/F.data.reg.Rd | 2 genpathmox-0.6/genpathmox/man/Fc.test.pls.Rd | 2 genpathmox-0.6/genpathmox/man/Fc.test.reg.Rd | 2 genpathmox-0.6/genpathmox/man/Fg.test.reg.Rd | 2 genpathmox-0.6/genpathmox/man/all.part.reg.Rd | 2 genpathmox-0.6/genpathmox/man/csibank.Rd |only genpathmox-0.6/genpathmox/man/element.Rd | 2 genpathmox-0.6/genpathmox/man/fcoef.tree.pls.Rd | 2 genpathmox-0.6/genpathmox/man/fcoef.tree.reg.Rd | 2 genpathmox-0.6/genpathmox/man/fglobal.tree.Rd | 2 genpathmox-0.6/genpathmox/man/fibtelereg.Rd | 2 genpathmox-0.6/genpathmox/man/info.mox.pls.Rd | 2 genpathmox-0.6/genpathmox/man/info.mox.reg.Rd | 2 genpathmox-0.6/genpathmox/man/info.pls-class.Rd |only genpathmox-0.6/genpathmox/man/mox.tree.Rd | 2 genpathmox-0.6/genpathmox/man/mox.tree.pls.Rd | 2 genpathmox-0.6/genpathmox/man/multigroup.pls.Rd |only genpathmox-0.6/genpathmox/man/node-class.Rd | 2 genpathmox-0.6/genpathmox/man/partopt.reg.Rd | 2 genpathmox-0.6/genpathmox/man/plot.xtree.pls.Rd |only genpathmox-0.6/genpathmox/man/pls.pathmox.Rd | 184 +++++------ genpathmox-0.6/genpathmox/man/pls.treemodel.Rd | 132 ++------ genpathmox-0.6/genpathmox/man/printTree.Rd | 2 genpathmox-0.6/genpathmox/man/reg.pathmox.Rd | 6 genpathmox-0.6/genpathmox/man/splitopt.reg.Rd | 2 genpathmox-0.6/genpathmox/man/summary.xtree.pls.Rd | 162 ++++----- genpathmox-0.6/genpathmox/man/test.particion.reg.Rd | 2 genpathmox-0.6/genpathmox/man/tree-class.Rd | 2 genpathmox-0.6/genpathmox/man/treenode.pls.Rd |only 117 files changed, 1115 insertions(+), 1189 deletions(-)
Title: Parallel Chain Tools for Bayesian Kernel Machine Regression
Description: Bayesian kernel machine regression (from the 'bkmr'
package) is a Bayesian semi-parametric generalized linear model
approach under identity and probit links. There are a number of
functions in this package that extend Bayesian kernel machine
regression fits to allow multiple-chain inference and diagnostics,
which leverage functions from the 'future', 'rstan', and 'coda'
packages. Reference: Bobb, J. F., Henn, B. C., Valeri, L., & Coull,
B. A. (2018). Statistical software for analyzing the health effects of
multiple concurrent exposures via Bayesian kernel machine regression.
; <doi:10.1186/s12940-018-0413-y>.
Author: Alexander Keil [aut, cre]
Maintainer: Alexander Keil <akeil@unc.edu>
Diff between bkmrhat versions 1.0.1 dated 2021-01-26 and 1.0.2 dated 2021-02-17
DESCRIPTION | 8 MD5 | 23 - NAMESPACE | 1 NEWS.md | 11 R/continue_funs.R | 3 R/parallel_funs.R | 4 R/repacked_funs.R | 24 + inst/doc/bkmrhat-vignette.html | 596 ++++++++++++++++++++--------------------- tests/test_coda.R | 2 tests/test_diag.R | 2 tests/test_parallel.R | 2 tests/test_pred.R | 2 tests/test_seeds.R |only 13 files changed, 353 insertions(+), 325 deletions(-)
More information about uni.survival.tree at CRAN
Permanent link
Title: Monotonic Optimal Binning
Description: Generate the monotonic binning and
perform the woe (weight of evidence) transformation for the logistic regression
used in the consumer credit scorecard development. The woe transformation is a piecewise
transformation that is linear to the log odds. For a numeric variable, all of its monotonic
functional transformations will converge to the same woe transformation.
Author: WenSui Liu
Maintainer: WenSui Liu <liuwensui@gmail.com>
Diff between mob versions 0.3 dated 2020-11-02 and 0.4 dated 2021-02-17
DESCRIPTION | 6 +++--- MD5 | 16 +++++++++------- NAMESPACE | 2 ++ R/batch_bin.R | 1 - R/batch_woe.R | 3 +-- R/gbm_bin.R | 1 + R/pool_bin.R |only R/qtl_bin.R | 1 + man/batch_woe.Rd | 2 +- man/pool_bin.Rd |only 10 files changed, 18 insertions(+), 14 deletions(-)
Title: Data Analysis of Liquid-Liquid Systems using R
Description: Originally design to characterise Aqueous Two Phase Systems, LLSR provide a simple way to analyse experimental data and obtain phase diagram parameters, among other properties, systematically. The package will include (every other update) new functions in order to comprise useful tools in liquid-liquid extraction research.
Author: Diego F Coelho <diegofcoelho@gmail.com> [aut, cre], Pedro Vitor Oliveira Menezes <pedrod841@hotmail.com> [dtc], Carla Corina dos Santos Porto <carlacorina@hotmail.com.br> [dtc], Jon George Huddleston <Jonathan.Huddleston@brunel.ac.uk> [rev], Elias Basile Tambourgi <eliastam@feq.unicamp.br> [rev]
Maintainer: Diego F Coelho <diegofcoelho@gmail.com>
Diff between LLSR versions 0.0.2.19 dated 2019-03-05 and 0.0.3.1 dated 2021-02-17
DESCRIPTION | 12 - MD5 | 108 +++++++------- NAMESPACE | 4 R/AQSearch.Binodal.R | 97 +++++++++---- R/AQSearch.Parameter.R | 104 +++++++++----- R/AQSearch.R | 57 +++++-- R/AQSearch.Slope.R | 101 +++++++++---- R/AQSearch.Tieline.R | 101 +++++++++---- R/AQSearchUtils.R | 15 +- R/AQSys.Bancroft_Othmer.R | 40 +++-- R/AQSys.CriticalPoint.R | 57 +++++-- R/AQSys.LevArmRule.R | 52 ++++--- R/AQSys.R | 256 ++++++++++++++++++++++++----------- R/AQSys.err.R | 35 +++- R/AQSys.mathDesc.R | 23 +-- R/AQSysCurve.R | 85 +++++++---- R/AQSysDB.R | 121 ++++++++++------ R/AQSysDOE.R | 91 ++++++++---- R/AQSysEval.R | 191 ++++++++++++++++---------- R/AQSysFormulas.R | 63 ++++---- R/AQSysPlot.R | 49 ++++-- R/AQSysUtils.R | 196 ++++++++++++++++---------- R/CorporateColours.R | 6 R/CritPointEqSys.R | 18 +- R/CritPointPoly.R | 24 ++- R/CritPointSeq.R | 68 ++++++--- R/LLSRUtils.R | 96 +++++++++---- R/datasets.R | 24 ++- README.md | 12 + build |only data/llsr_data.rda |binary data/temp_data.rda |binary man/AQSearch.Binodal.Rd | 45 ++++-- man/AQSearch.Parameter.Rd | 45 ++++-- man/AQSearch.Rd | 48 ++++-- man/AQSearch.Slope.Rd | 45 ++++-- man/AQSearch.Tieline.Rd | 45 ++++-- man/AQSys.CritPoint.Rd | 76 +++++++--- man/AQSys.LevArmRule.Rd | 52 +++++-- man/AQSys.Rd | 67 +++++---- man/AQSys.data.Rd | 31 ++-- man/AQSys.plot.Rd | 90 ++++++++---- man/AQSysBancroft.Rd | 12 + man/AQSysCurve.Rd | 85 ++++++++--- man/AQSysDB.Rd | 5 man/AQSysDOE.Rd | 53 +++++-- man/AQSysEval.Rd | 85 ++++++++--- man/AQSysList.Rd | 6 man/AQSysOthmer.Rd | 13 + man/AQSysPlot.Rd | 48 ++++-- man/ExportData.Rd | 6 man/ExportTemplate.Rd | 3 man/llsr_data.Rd | 27 ++- man/peg4kslt.Rd | 9 - tests/testthat/testMainFns.R | 31 +++- tests/testthat/testthat-problems.rds |only 56 files changed, 2024 insertions(+), 1009 deletions(-)
Title: General Resampling Infrastructure
Description: Classes and functions to create and summarize different types of resampling objects (e.g. bootstrap, cross-validation).
Author: Julia Silge [aut, cre] (<https://orcid.org/0000-0002-3671-836X>),
Fanny Chow [aut],
Max Kuhn [aut],
Hadley Wickham [aut],
RStudio [cph]
Maintainer: Julia Silge <julia.silge@rstudio.com>
Diff between rsample versions 0.0.8 dated 2020-09-23 and 0.0.9 dated 2021-02-17
rsample-0.0.8/rsample/R/lables.R |only rsample-0.0.8/rsample/inst/doc/Basics.R |only rsample-0.0.8/rsample/inst/doc/Basics.Rmd |only rsample-0.0.8/rsample/inst/doc/Basics.html |only rsample-0.0.8/rsample/vignettes/Applications/Keras.Rmd |only rsample-0.0.8/rsample/vignettes/Applications/Time_Series.Rmd |only rsample-0.0.8/rsample/vignettes/Basics.Rmd |only rsample-0.0.9/rsample/DESCRIPTION | 24 rsample-0.0.9/rsample/MD5 | 89 - rsample-0.0.9/rsample/NAMESPACE | 35 rsample-0.0.9/rsample/NEWS.md | 19 rsample-0.0.9/rsample/R/0_imports.R | 2 rsample-0.0.9/rsample/R/apparent.R | 3 rsample-0.0.9/rsample/R/boot.R | 3 rsample-0.0.9/rsample/R/bootci.R | 2 rsample-0.0.9/rsample/R/compat-vctrs-helpers.R | 83 - rsample-0.0.9/rsample/R/complement.R | 53 rsample-0.0.9/rsample/R/groups.R | 2 rsample-0.0.9/rsample/R/initial_split.R | 8 rsample-0.0.9/rsample/R/labels.R |only rsample-0.0.9/rsample/R/misc.R | 56 rsample-0.0.9/rsample/R/nest.R | 2 rsample-0.0.9/rsample/R/permutations.R |only rsample-0.0.9/rsample/R/reg_intervals.R |only rsample-0.0.9/rsample/R/rset.R | 8 rsample-0.0.9/rsample/R/rsplit.R | 22 rsample-0.0.9/rsample/R/tidyselect.R |only rsample-0.0.9/rsample/R/validation_split.R | 2 rsample-0.0.9/rsample/R/vfold.R | 7 rsample-0.0.9/rsample/build/vignette.rds |binary rsample-0.0.9/rsample/inst/doc/Working_with_rsets.html | 635 +++------- rsample-0.0.9/rsample/inst/doc/rsample.R |only rsample-0.0.9/rsample/inst/doc/rsample.Rmd |only rsample-0.0.9/rsample/inst/doc/rsample.html |only rsample-0.0.9/rsample/man/add_resample_id.Rd | 2 rsample-0.0.9/rsample/man/bootstraps.Rd | 3 rsample-0.0.9/rsample/man/complement.Rd | 26 rsample-0.0.9/rsample/man/get_fingerprint.Rd |only rsample-0.0.9/rsample/man/int_pctl.Rd | 3 rsample-0.0.9/rsample/man/labels.rset.Rd | 2 rsample-0.0.9/rsample/man/labels.rsplit.Rd | 2 rsample-0.0.9/rsample/man/new_rset.Rd | 5 rsample-0.0.9/rsample/man/permutations.Rd |only rsample-0.0.9/rsample/man/pretty.vfold_cv.Rd | 5 rsample-0.0.9/rsample/man/reexports.Rd | 14 rsample-0.0.9/rsample/man/reg_intervals.Rd |only rsample-0.0.9/rsample/man/rset_reconstruct.Rd |only rsample-0.0.9/rsample/tests/testthat/print_test_output/obj_sum |only rsample-0.0.9/rsample/tests/testthat/test-make-splits.R |only rsample-0.0.9/rsample/tests/testthat/test_bootci.R | 49 rsample-0.0.9/rsample/tests/testthat/test_fingerprint.R |only rsample-0.0.9/rsample/tests/testthat/test_initial.R | 2 rsample-0.0.9/rsample/tests/testthat/test_permutations.R |only rsample-0.0.9/rsample/tests/testthat/test_rset.R | 4 rsample-0.0.9/rsample/tests/testthat/test_rsplit.R | 11 rsample-0.0.9/rsample/vignettes/Applications/Intervals.Rmd | 66 - rsample-0.0.9/rsample/vignettes/rsample.Rmd |only 57 files changed, 655 insertions(+), 594 deletions(-)
Title: A Set of Tools that Enhance Reproducibility Beyond Package
Management
Description: Collection of high-level, machine- and OS-independent tools
for making deeply reproducible and reusable content in R.
The two workhorse functions are Cache and prepInputs;
these allow for: nested caching, robust to environments, and objects with
environments (like functions); and data retrieval and processing
in continuous workflow environments. In all cases,
efforts are made to make the first and subsequent calls of functions have
the same result, but vastly faster at subsequent times by way of checksums
and digesting. Several features are still under active development, including
cloud storage of cached objects, allowing for sharing between users. Several
advanced options are available, see ?reproducibleOptions.
Author: Eliot J B McIntire [aut, cre] (<https://orcid.org/0000-0002-6914-8316>),
Alex M Chubaty [aut] (<https://orcid.org/0000-0001-7146-8135>),
Tati Micheletti [ctb] (<https://orcid.org/0000-0003-4838-8342>),
Ceres Barros [ctb] (<https://orcid.org/0000-0003-4036-977X>),
Ian Eddy [ctb] (<https://orcid.org/0000-0001-7397-2116>),
Her Majesty the Queen in Right of Canada, as represented by the
Minister of Natural Resources Canada [cph]
Maintainer: Eliot J B McIntire <eliot.mcintire@canada.ca>
Diff between reproducible versions 1.2.4 dated 2020-12-07 and 1.2.6 dated 2021-02-17
DESCRIPTION | 10 MD5 | 64 - NEWS.md | 12 R/DBI.R | 1 R/cache-helpers.R | 413 ++++++- R/cache-internals.R | 3 R/cache.R | 85 + R/convertPaths.R | 3 R/download.R | 17 R/gis.R | 47 R/helpers.R | 3 R/options.R | 10 R/postProcess.R | 332 ++++-- R/preProcess.R | 46 R/prepInputs.R | 12 R/robustDigest.R | 23 build/vignette.rds |binary inst/WORDLIST | 67 - inst/doc/Cache-using-postgresql.html | 42 inst/doc/Intro-to-Cache.html | 1256 +++++++++++------------ man/preProcess.Rd | 6 man/prepInputs.Rd | 6 man/prepareOutput.Rd | 2 man/reproducibleOptions.Rd | 7 tests/testthat/helper-allEqual.R | 3 tests/testthat/test-cache.R | 140 ++ tests/testthat/test-devMode.R | 2 tests/testthat/test-misc.R | 2 tests/testthat/test-multipleCacheRepo.R | 2 tests/testthat/test-postProcess.R | 64 + tests/testthat/test-preProcessWorks.R | 65 - tests/testthat/test-prepInputs.R | 37 tests/testthat/test-prepInputsInNestedArchives.R | 146 +- 33 files changed, 1802 insertions(+), 1126 deletions(-)
Title: Spatial Objects of the Czech Republic
Description: Administrative regions and other spatial objects of the Czech Republic.
Author: Jindra Lacko
Maintainer: Jindra Lacko <jindra.lacko@gmail.com>
Diff between RCzechia versions 1.6.3 dated 2021-01-07 and 1.6.6 dated 2021-02-17
DESCRIPTION | 13 LICENSE | 2 MD5 | 69 +- NAMESPACE | 3 NEWS.md | 14 R/casti.R | 7 R/chr_uzemi.R | 2 R/downloader.R | 5 R/geocode.R | 21 R/kraje.R | 6 R/obce_body.R | 6 R/obce_polygony.R | 6 R/okresy.R | 6 R/orp_polygony.R | 4 R/revgeo.R | 21 R/senat_obvody.R |only R/sysdata.rda |binary R/volebni_okrsky.R |only R/zip_codes.R |only README.md | 14 build/vignette.rds |binary inst/doc/vignette.R | 72 +- inst/doc/vignette.Rmd | 87 ++- inst/doc/vignette.html | 632 +++++++++---------------- man/casti.Rd | 4 man/geocode.Rd | 5 man/kraje.Rd | 4 man/obce_body.Rd | 4 man/obce_polygony.Rd | 4 man/okresy.Rd | 4 man/orp_polygony.Rd | 2 man/revgeo.Rd | 6 man/senat_obvody.Rd |only man/volebni_okrsky.Rd |only man/zip_codes.Rd |only tests/testthat/test-1-data-structures.R | 784 ++++++++++++++++++-------------- tests/testthat/test-2-code.R | 119 ++-- tests/testthat/test-3-integrace.R |only vignettes/vignette.Rmd | 87 ++- 39 files changed, 1030 insertions(+), 983 deletions(-)
Title: Health Economic Simulation Modeling and Decision Analysis
Description: A modular and computationally efficient R package for
parameterizing, simulating, and analyzing health economic simulation
models. The package supports cohort discrete time state transition models
(Briggs et al. 1998) <doi:10.2165/00019053-199813040-00003>,
N-state partitioned survival models (Glasziou et al. 1990)
<doi:10.1002/sim.4780091106>, and individual-level continuous
time state transition models (Siebert et al. 2012) <doi:10.1016/j.jval.2012.06.014>,
encompassing both Markov (time-homogeneous and time-inhomogeneous) and
semi-Markov processes. Decision uncertainty from a cost-effectiveness analysis is
quantified with standard graphical and tabular summaries of a probabilistic
sensitivity analysis (Claxton et al. 2005, Barton et al. 2008) <doi:10.1002/hec.985>,
<doi:10.1111/j.1524-4733.2008.00358.x>. Use of C++ and data.table
make individual-patient simulation, probabilistic sensitivity analysis,
and incorporation of patient heterogeneity fast.
Author: Devin Incerti [aut, cre],
Jeroen P. Jansen [aut],
R Core Team [ctb] (hesim uses some slightly modified C functions from
base R)
Maintainer: Devin Incerti <devin.incerti@gmail.com>
Diff between hesim versions 0.4.2 dated 2020-12-07 and 0.5.0 dated 2021-02-17
hesim-0.4.2/hesim/R/outcomes.R |only hesim-0.4.2/hesim/inst/doc/expected-values.Rmd |only hesim-0.4.2/hesim/inst/doc/expected-values.html |only hesim-0.4.2/hesim/tests/testthat/test-outcomes.R |only hesim-0.4.2/hesim/vignettes/expected-values.Rmd |only hesim-0.5.0/hesim/DESCRIPTION | 16 hesim-0.5.0/hesim/MD5 | 325 +++++--- hesim-0.5.0/hesim/NAMESPACE | 25 hesim-0.5.0/hesim/R/bootstrap.R | 41 - hesim-0.5.0/hesim/R/cea.R | 414 ++++------ hesim-0.5.0/hesim/R/ctstm.R | 185 ++-- hesim-0.5.0/hesim/R/data.R | 26 hesim-0.5.0/hesim/R/deprecated.R |only hesim-0.5.0/hesim/R/distributions.R | 4 hesim-0.5.0/hesim/R/dtstm.R | 299 +++++-- hesim-0.5.0/hesim/R/hesim.R | 3 hesim-0.5.0/hesim/R/hesim_data.R | 298 ++++++- hesim-0.5.0/hesim/R/model-fits.R | 14 hesim-0.5.0/hesim/R/model_def.R | 16 hesim-0.5.0/hesim/R/output.R |only hesim-0.5.0/hesim/R/params.R | 163 ++-- hesim-0.5.0/hesim/R/plot.R |only hesim-0.5.0/hesim/R/psm.R | 119 +- hesim-0.5.0/hesim/R/statevals.R | 258 ++---- hesim-0.5.0/hesim/R/summarize.R |only hesim-0.5.0/hesim/R/tparams.R | 82 +- hesim-0.5.0/hesim/R/tpmatrix.R | 163 +++- hesim-0.5.0/hesim/R/utils.R | 176 +++- hesim-0.5.0/hesim/README.md | 56 + hesim-0.5.0/hesim/build/vignette.rds |binary hesim-0.5.0/hesim/data/onc3p.rda |only hesim-0.5.0/hesim/inst/doc/cea.R | 142 +-- hesim-0.5.0/hesim/inst/doc/cea.Rmd | 198 +--- hesim-0.5.0/hesim/inst/doc/cea.html | 477 +++++------- hesim-0.5.0/hesim/inst/doc/intro.R | 101 +- hesim-0.5.0/hesim/inst/doc/intro.Rmd | 177 ++-- hesim-0.5.0/hesim/inst/doc/intro.html | 407 +++++----- hesim-0.5.0/hesim/inst/doc/markov-cohort.R | 51 - hesim-0.5.0/hesim/inst/doc/markov-cohort.Rmd | 68 - hesim-0.5.0/hesim/inst/doc/markov-cohort.html | 237 +++-- hesim-0.5.0/hesim/inst/doc/markov-inhomogeneous-cohort.R | 51 - hesim-0.5.0/hesim/inst/doc/markov-inhomogeneous-cohort.Rmd | 68 - hesim-0.5.0/hesim/inst/doc/markov-inhomogeneous-cohort.html | 416 +++++----- hesim-0.5.0/hesim/inst/doc/markov-inhomogeneous-indiv.R | 41 - hesim-0.5.0/hesim/inst/doc/markov-inhomogeneous-indiv.Rmd | 46 - hesim-0.5.0/hesim/inst/doc/markov-inhomogeneous-indiv.html | 372 ++++----- hesim-0.5.0/hesim/inst/doc/mlogit.R | 48 - hesim-0.5.0/hesim/inst/doc/mlogit.Rmd | 60 - hesim-0.5.0/hesim/inst/doc/mlogit.html | 182 ++-- hesim-0.5.0/hesim/inst/doc/mstate.R | 85 -- hesim-0.5.0/hesim/inst/doc/mstate.Rmd | 111 +- hesim-0.5.0/hesim/inst/doc/mstate.html | 395 ++++----- hesim-0.5.0/hesim/inst/doc/psm.R | 71 - hesim-0.5.0/hesim/inst/doc/psm.Rmd | 81 +- hesim-0.5.0/hesim/inst/doc/psm.html | 231 +++-- hesim-0.5.0/hesim/inst/include/hesim/ctstm/ctstm.h | 6 hesim-0.5.0/hesim/man/CohortDtstm.Rd | 200 +++-- hesim-0.5.0/hesim/man/CohortDtstmTrans.Rd | 43 + hesim-0.5.0/hesim/man/CtstmTrans.Rd | 16 hesim-0.5.0/hesim/man/IndivCtstm.Rd | 45 - hesim-0.5.0/hesim/man/IndivCtstmTrans.Rd | 21 hesim-0.5.0/hesim/man/Psm.Rd | 59 - hesim-0.5.0/hesim/man/PsmCurves.Rd | 15 hesim-0.5.0/hesim/man/StateVals.Rd | 4 hesim-0.5.0/hesim/man/absorbing.Rd | 4 hesim-0.5.0/hesim/man/autoplot.stateprobs.Rd |only hesim-0.5.0/hesim/man/autoplot.survival.Rd |only hesim-0.5.0/hesim/man/bootstrap.Rd | 5 hesim-0.5.0/hesim/man/ce.Rd | 19 hesim-0.5.0/hesim/man/cea.Rd | 66 + hesim-0.5.0/hesim/man/costs.Rd | 2 hesim-0.5.0/hesim/man/create_CohortDtstm.Rd | 10 hesim-0.5.0/hesim/man/create_CohortDtstmTrans.Rd | 26 hesim-0.5.0/hesim/man/create_IndivCtstmTrans.Rd | 11 hesim-0.5.0/hesim/man/create_PsmCurves.Rd | 17 hesim-0.5.0/hesim/man/create_StateVals.Rd | 28 hesim-0.5.0/hesim/man/create_params.Rd | 50 - hesim-0.5.0/hesim/man/create_trans_dt.Rd | 8 hesim-0.5.0/hesim/man/disprog.Rd | 4 hesim-0.5.0/hesim/man/expmat.Rd | 9 hesim-0.5.0/hesim/man/flexsurvreg_list.Rd | 4 hesim-0.5.0/hesim/man/get_labels.Rd |only hesim-0.5.0/hesim/man/hesim.Rd | 2 hesim-0.5.0/hesim/man/hesim_data.Rd | 35 hesim-0.5.0/hesim/man/hesim_survdists.Rd | 4 hesim-0.5.0/hesim/man/icea.Rd | 2 hesim-0.5.0/hesim/man/icer.Rd |only hesim-0.5.0/hesim/man/icer_tbl.Rd | 2 hesim-0.5.0/hesim/man/incr_effect.Rd | 2 hesim-0.5.0/hesim/man/lm_list.Rd | 4 hesim-0.5.0/hesim/man/multinom_list.Rd | 2 hesim-0.5.0/hesim/man/normboot.Rd |only hesim-0.5.0/hesim/man/onc3.Rd | 3 hesim-0.5.0/hesim/man/onc3p.Rd |only hesim-0.5.0/hesim/man/params.Rd | 2 hesim-0.5.0/hesim/man/params_joined_surv.Rd | 2 hesim-0.5.0/hesim/man/params_joined_surv_list.Rd | 4 hesim-0.5.0/hesim/man/params_lm_list.Rd | 4 hesim-0.5.0/hesim/man/params_mlogit_list.Rd | 4 hesim-0.5.0/hesim/man/params_surv.Rd | 18 hesim-0.5.0/hesim/man/params_surv_list.Rd | 2 hesim-0.5.0/hesim/man/partsurvfit.Rd | 4 hesim-0.5.0/hesim/man/plot_ceac.Rd |only hesim-0.5.0/hesim/man/plot_ceaf.Rd |only hesim-0.5.0/hesim/man/plot_ceplane.Rd |only hesim-0.5.0/hesim/man/plot_evpi.Rd |only hesim-0.5.0/hesim/man/qalys.Rd | 2 hesim-0.5.0/hesim/man/qmatrix.Rd | 42 - hesim-0.5.0/hesim/man/qmatrix.matrix.Rd |only hesim-0.5.0/hesim/man/qmatrix.msm.Rd |only hesim-0.5.0/hesim/man/reexports.Rd |only hesim-0.5.0/hesim/man/set_labels.Rd |only hesim-0.5.0/hesim/man/sim_ev.Rd | 8 hesim-0.5.0/hesim/man/stateprobs.Rd | 3 hesim-0.5.0/hesim/man/stateval_tbl.Rd | 29 hesim-0.5.0/hesim/man/summarize_ce.Rd | 8 hesim-0.5.0/hesim/man/summary.ce.Rd |only hesim-0.5.0/hesim/man/surv_quantile.Rd | 2 hesim-0.5.0/hesim/man/survival.Rd |only hesim-0.5.0/hesim/man/tparams_transprobs.Rd | 23 hesim-0.5.0/hesim/man/tpmatrix_id.Rd | 8 hesim-0.5.0/hesim/src/ctstm.cpp | 10 hesim-0.5.0/hesim/tests/testthat/test-bootstrap.R | 5 hesim-0.5.0/hesim/tests/testthat/test-cea.R | 276 ++++-- hesim-0.5.0/hesim/tests/testthat/test-ctstm.R | 97 +- hesim-0.5.0/hesim/tests/testthat/test-dtstm.R | 91 +- hesim-0.5.0/hesim/tests/testthat/test-hesim_data.R | 416 +++++++--- hesim-0.5.0/hesim/tests/testthat/test-model_def.R | 21 hesim-0.5.0/hesim/tests/testthat/test-params.R | 11 hesim-0.5.0/hesim/tests/testthat/test-plot.R |only hesim-0.5.0/hesim/tests/testthat/test-psm.R | 37 hesim-0.5.0/hesim/tests/testthat/test-statevals.R | 329 ++++---- hesim-0.5.0/hesim/tests/testthat/test-summarize.R |only hesim-0.5.0/hesim/tests/testthat/test-tpmatrix.R | 136 +++ hesim-0.5.0/hesim/vignettes/cea.Rmd | 198 +--- hesim-0.5.0/hesim/vignettes/illness-death.png |binary hesim-0.5.0/hesim/vignettes/intro.Rmd | 177 ++-- hesim-0.5.0/hesim/vignettes/intro_cache |only hesim-0.5.0/hesim/vignettes/markov-cohort.Rmd | 68 - hesim-0.5.0/hesim/vignettes/markov-inhomogeneous-cohort.Rmd | 68 - hesim-0.5.0/hesim/vignettes/markov-inhomogeneous-indiv.Rmd | 46 - hesim-0.5.0/hesim/vignettes/mlogit.Rmd | 60 - hesim-0.5.0/hesim/vignettes/mstate.Rmd | 111 +- hesim-0.5.0/hesim/vignettes/psm.Rmd | 81 +- hesim-0.5.0/hesim/vignettes/reversible-illness-death.png |binary 145 files changed, 5655 insertions(+), 4275 deletions(-)
Title: Flexible Inference via Permutations in R
Description: A flexible permutation framework for hypothesis
testing, ANOVA and regression analysis of complex data.
Author: Alessia Pini [aut],
Aymeric Stamm [aut, cre] (<https://orcid.org/0000-0002-8725-3654>),
Simone Vantini [aut]
Maintainer: Aymeric Stamm <aymeric.stamm@math.cnrs.fr>
Diff between flipr versions 0.1.0 dated 2021-02-16 and 0.1.1 dated 2021-02-17
flipr-0.1.0/flipr/LICENSE |only flipr-0.1.1/flipr/DESCRIPTION | 8 ++++---- flipr-0.1.1/flipr/MD5 | 13 ++++++------- flipr-0.1.1/flipr/NEWS.md | 5 +++++ flipr-0.1.1/flipr/inst/doc/exactness.R | 13 +++++++------ flipr-0.1.1/flipr/inst/doc/exactness.Rmd | 13 +++++++------ flipr-0.1.1/flipr/inst/doc/exactness.html | 28 ++++++++++++++++------------ flipr-0.1.1/flipr/vignettes/exactness.Rmd | 13 +++++++------ 8 files changed, 52 insertions(+), 41 deletions(-)
Title: Dot-and-Whisker Plots of Regression Results
Description: Quick and easy dot-and-whisker plots of regression results.
Author: Frederick Solt [aut],
Yue Hu [aut, cre],
Os Keyes [ctb],
Ben Bolker [ctb],
Stefan Müller [ctb],
Thomas Leeper [ctb],
Chris Wallace [ctb],
Christopher Warshaw [ctb]
Maintainer: Yue Hu <yuehu@tsinghua.edu.cn>
Diff between dotwhisker versions 0.5.0 dated 2018-06-27 and 0.6.0 dated 2021-02-17
DESCRIPTION | 42 MD5 | 54 - NAMESPACE | 92 +- NEWS.md | 228 ++--- R/add_brackets.R | 330 +++---- R/by_2sd.R | 126 +- R/dwplot.R | 885 +++++++++++--------- R/relabel_predictors.R | 142 +-- R/relabel_y_axis.R | 28 R/secret_weapon.R | 141 +-- R/small_multiple.R | 335 +++---- build/vignette.rds |binary inst/doc/dotwhisker-vignette.R | 623 +++++++------- inst/doc/dotwhisker-vignette.Rmd | 886 ++++++++++---------- inst/doc/dotwhisker-vignette.html | 1113 +++++++++++++------------ inst/doc/kl2007_examples.R | 1352 +++++++++++++++--------------- inst/doc/kl2007_examples.Rmd | 1480 ++++++++++++++++----------------- inst/doc/kl2007_examples.html | 1674 +++++++++++++++++++------------------- man/add_brackets.Rd | 78 - man/by_2sd.Rd | 72 - man/dwplot.Rd | 241 +++-- man/relabel_predictors.Rd | 80 - man/relabel_y_axis.Rd | 34 man/secret_weapon.Rd | 95 +- man/small_multiple.Rd | 206 ++-- vignettes/dotwhisker-vignette.Rmd | 886 ++++++++++---------- vignettes/kl2007_examples.Rmd | 1480 ++++++++++++++++----------------- vignettes/vignette.bib | 118 +- 28 files changed, 6665 insertions(+), 6156 deletions(-)
Title: Tools for CM SAF NetCDF Data
Description: The Satellite Application Facility on Climate Monitoring (CM SAF)
is a ground segment of the European Organization for the Exploitation of
Meteorological Satellites (EUMETSAT) and one of EUMETSATs Satellite Application
Facilities. The CM SAF contributes to the sustainable monitoring of the climate
system by providing essential climate variables related to the energy and water
cycle of the atmosphere (<http://www.cmsaf.eu>). It is a joint cooperation of eight
National Meteorological and Hydrological Services.
The 'cmsafops' R-package provides a collection of R-operators for the analysis and
manipulation of CM SAF NetCDF formatted data. Other CF conform NetCDF data with time,
longitude and latitude dimension should be applicable, but there is no guarantee for
an error-free application.
CM SAF climate data records are provided for free via (<https://wui.cmsaf.eu/safira>).
Detailed information and test data are provided on the CM SAF webpage
(<http://www.cmsaf.eu/R_toolbox>).
Author: Steffen Kothe [aut, cre]
Maintainer: Steffen Kothe <Steffen.Kothe@dwd.de>
Diff between cmsafops versions 1.0.0 dated 2020-09-17 and 1.1.0 dated 2021-02-17
DESCRIPTION | 11 MD5 | 725 ++++++--- NAMESPACE | 76 NEWS.md | 13 R/acsaf_box_mergetime.R |only R/add_grid_info.R | 188 +- R/arith_wrapper.R | 442 ++--- R/arithc_wrapper.R | 226 +- R/box_mergetime.R | 742 ++++----- R/calc_allDatesNc.R |only R/calc_field.R | 69 R/calc_overlapping_time.R |only R/calc_regres_coef_a.R |only R/calc_regres_coef_b.R |only R/calc_timestepNc.R |only R/calc_timx_result.R | 2 R/calc_trend.R | 131 - R/calc_trend_advanced.R |only R/change_att.R | 2 R/check.coordinate.system.R |only R/check_constant.R | 10 R/check_dims.R | 58 R/check_format.R | 20 R/check_infile.R | 18 R/check_infiles.R | 24 R/check_nc_version.R | 26 R/check_outfile.R | 18 R/check_overwrite.R | 14 R/check_variable.R | 10 R/cmsaf.abs.R |only R/cmsaf.add.R | 15 R/cmsaf.addc.R | 5 R/cmsaf.adjust.two.files.R |only R/cmsaf.cat.R | 448 ++--- R/cmsaf.detrend.R |only R/cmsaf.div.R | 23 R/cmsaf.divc.R | 5 R/cmsaf.mk.test.R |only R/cmsaf.mul.R | 15 R/cmsaf.mulc.R | 5 R/cmsaf.regres.R |only R/cmsaf.stats.R |only R/cmsaf.stats.station.data.R |only R/cmsaf.sub.R | 158 +- R/cmsaf.sub.rel.R |only R/cmsaf.subc.R | 5 R/cmsaf.transform.coordinate.system.R |only R/cmsafops.R | 169 +- R/constants.R | 276 +-- R/correct_filename.R | 20 R/dayavg.R |only R/daymax.R |only R/daymean.R |only R/daymin.R |only R/daypctl.R |only R/dayrange.R | 4 R/daysd.R |only R/daysum.R |only R/dayvar.R |only R/dayx_wrapper.R |only R/define_dims.R | 86 - R/define_vars_mk.test.R |only R/define_vars_trend.R | 84 - R/define_vars_trend_advanced.R |only R/divdpm.R | 4 R/extract.level.R | 5 R/extract.period.R | 520 +++--- R/fld_cor_covar_wrapper.R |only R/fldcor.R |only R/fldcovar.R |only R/fldmax.R | 4 R/fldmean.R | 4 R/fldmin.R | 4 R/fldrange.R |only R/fldsd.R |only R/fldsum.R |only R/fldx_wrapper.R | 8 R/getTimeRange.R |only R/get_climatology.R | 56 R/get_cor_data.R |only R/get_cor_data_fld.R |only R/get_date_time.R | 7 R/get_dimensions.R | 97 - R/get_nc_version.R | 28 R/get_processing_time_string.R | 39 R/get_time.R | 178 +- R/get_time_bnds_1.R | 14 R/get_time_bnds_from_file.R | 16 R/get_time_bnds_mul.R | 28 R/get_time_bounds.R | 26 R/get_time_bounds_hour.R |only R/get_time_bounds_month.R | 26 R/get_time_bounds_run.R |only R/get_time_bounds_timrange.R |only R/get_time_bounds_year.R | 26 R/get_time_info.R | 35 R/get_var_atts.R | 36 R/get_var_from_vars.R | 26 R/get_var_prec.R | 1 R/gridboxmax.R |only R/gridboxmean.R |only R/gridboxmin.R |only R/gridboxrange.R |only R/gridboxsd.R |only R/gridboxsum.R |only R/gridboxvar.R |only R/gridboxx_wrapper.R |only R/hourmean.R |only R/hoursum.R |only R/hourx_wrapper.R |only R/is_leap_year.R | 6 R/levbox_mergetime.R | 6 R/mermean.R |only R/merx_wrapper.R |only R/mon.anomaly.R | 386 ++-- R/mon.anomaly.climatology.R |only R/monavg.R |only R/mondaymean.R |only R/monmax.R | 4 R/monmean.R | 10 R/monmin.R | 4 R/monpctl.R |only R/monsd.R | 6 R/monsum.R | 4 R/monvar.R |only R/monx_wrapper.R | 27 R/muldpm.R | 4 R/multimonmean.R | 3 R/multimonsum.R | 9 R/multiplelm.R |only R/ncinfo.R | 2 R/read_file.R | 150 + R/read_gridfile.R | 54 R/read_ncvar.R | 167 +- R/redefine_grid_vars.R | 72 R/remap.R | 6 R/runmax.R |only R/runmean.R |only R/runmin.R |only R/runrange.R |only R/runsd.R |only R/runsum.R |only R/runx_wrapper.R |only R/seas.anomaly.R | 4 R/seasmean.R | 4 R/seassd.R |only R/seassum.R | 4 R/seasvar.R |only R/seasx_wrapper.R | 12 R/sellonlatbox.R | 9 R/selmon.R | 5 R/selperiod.R | 230 +- R/selpoint.R | 6 R/seltime.R | 5 R/selyear.R | 5 R/set_seasons.R | 54 R/simplelm.R | 46 R/simplelm2.R | 50 R/tim_cor_covar_wrapper.R |only R/timcor.R |only R/timcovar.R |only R/timcumsum.R | 534 +++--- R/timmax.R | 8 R/timmean.R | 8 R/timmin.R | 4 R/timpctl.R | 129 - R/timsd.R | 122 - R/timselmean.R |only R/timselsum.R |only R/timselx_wrapper.R |only R/timsum.R | 4 R/timx_wrapper.R | 162 +- R/trend.R | 4 R/trend_advanced.R |only R/wfldmean.R | 12 R/write_output_file_mk.test.R |only R/write_output_file_trend.R | 264 +-- R/write_output_file_trend_advanced.R |only R/xdpm_wrapper.R | 242 +-- R/ydaymax.R |only R/ydaymean.R | 314 +-- R/ydaymin.R |only R/ydayrange.R |only R/ydaysd.R |only R/ydaysum.R |only R/ydayx_wrapper.R |only R/ydrunmean.R |only R/ydrunsd.R |only R/ydrunsum.R |only R/ydrunx_wrapper.R |only R/year.anomaly.R | 4 R/yearmax.R |only R/yearmean.R | 4 R/yearmin.R |only R/yearrange.R |only R/yearsd.R |only R/yearsum.R | 4 R/yearvar.R |only R/yearx_wrapper.R |only R/ymonmax.R | 6 R/ymonmean.R | 4 R/ymonmin.R | 4 R/ymonsd.R | 4 R/ymonsum.R | 8 R/yseasmax.R | 4 R/yseasmean.R | 4 R/yseasmin.R | 4 R/yseassd.R | 4 R/zonmean.R |only R/zonsum.R |only R/zonx_wrapper.R |only build |only inst/WORDLIST | 62 man/acsaf_box_mergetime.Rd |only man/add_grid_info.Rd | 2 man/box_mergetime.Rd | 9 man/calc_allDatesNc.Rd |only man/calc_overlapping_time.Rd |only man/calc_timestepNc.Rd |only man/change_att.Rd | 2 man/check.coordinate.system.Rd |only man/cmsaf.abs.Rd |only man/cmsaf.add.Rd | 16 man/cmsaf.addc.Rd | 6 man/cmsaf.adjust.two.files.Rd |only man/cmsaf.cat.Rd | 6 man/cmsaf.detrend.Rd |only man/cmsaf.div.Rd | 24 man/cmsaf.divc.Rd | 6 man/cmsaf.mk.test.Rd |only man/cmsaf.mul.Rd | 16 man/cmsaf.mulc.Rd | 6 man/cmsaf.regres.Rd |only man/cmsaf.stats.Rd |only man/cmsaf.stats.station.data.Rd |only man/cmsaf.sub.Rd | 23 man/cmsaf.sub.rel.Rd |only man/cmsaf.subc.Rd | 6 man/cmsaf.transform.coordinate.system.Rd |only man/cmsafops.Rd | 75 man/dayavg.Rd |only man/daymax.Rd |only man/daymean.Rd |only man/daymin.Rd |only man/daypctl.Rd |only man/dayrange.Rd | 19 man/daysd.Rd |only man/daysum.Rd |only man/dayvar.Rd |only man/divdpm.Rd | 5 man/extract.level.Rd | 5 man/extract.period.Rd | 6 man/fldcor.Rd |only man/fldcovar.Rd |only man/fldmax.Rd | 7 man/fldmean.Rd | 7 man/fldmin.Rd | 7 man/fldrange.Rd |only man/fldsd.Rd |only man/fldsum.Rd |only man/get_date_time.Rd |only man/get_dimensions.Rd |only man/get_nc_version.Rd |only man/get_processing_time_string.Rd |only man/get_time.Rd | 4 man/get_time_info.Rd |only man/gridboxmax.Rd |only man/gridboxmean.Rd |only man/gridboxmin.Rd |only man/gridboxrange.Rd |only man/gridboxsd.Rd |only man/gridboxsum.Rd |only man/gridboxvar.Rd |only man/hourmean.Rd |only man/hoursum.Rd |only man/levbox_mergetime.Rd | 8 man/mermean.Rd |only man/mon.anomaly.Rd | 14 man/mon.anomaly.climatology.Rd |only man/monavg.Rd |only man/mondaymean.Rd |only man/monmax.Rd | 8 man/monmean.Rd | 14 man/monmin.Rd | 8 man/monpctl.Rd |only man/monsd.Rd | 10 man/monsum.Rd | 8 man/monvar.Rd |only man/muldpm.Rd | 5 man/multimonmean.Rd | 7 man/multimonsum.Rd | 13 man/ncinfo.Rd | 2 man/read_file.Rd |only man/read_ncvar.Rd | 3 man/remap.Rd | 8 man/runmax.Rd |only man/runmean.Rd |only man/runmin.Rd |only man/runrange.Rd |only man/runsd.Rd |only man/runsum.Rd |only man/seas.anomaly.Rd | 6 man/seasmean.Rd | 6 man/seassd.Rd |only man/seassum.Rd | 6 man/seasvar.Rd |only man/sellonlatbox.Rd | 9 man/selmon.Rd | 5 man/selperiod.Rd | 5 man/selpoint.Rd | 6 man/seltime.Rd | 5 man/selyear.Rd | 5 man/timcor.Rd |only man/timcovar.Rd |only man/timcumsum.Rd | 18 man/timmax.Rd | 12 man/timmean.Rd | 12 man/timmin.Rd | 8 man/timpctl.Rd | 9 man/timsd.Rd | 16 man/timselmean.Rd |only man/timselsum.Rd |only man/timsum.Rd | 8 man/trend.Rd | 10 man/trend_advanced.Rd |only man/wfldmean.Rd | 17 man/ydaymax.Rd |only man/ydaymean.Rd | 27 man/ydaymin.Rd |only man/ydayrange.Rd |only man/ydaysd.Rd |only man/ydaysum.Rd |only man/ydrunmean.Rd |only man/ydrunsd.Rd |only man/ydrunsum.Rd |only man/year.anomaly.Rd | 11 man/yearmax.Rd |only man/yearmean.Rd | 11 man/yearmin.Rd |only man/yearrange.Rd |only man/yearsd.Rd |only man/yearsum.Rd | 11 man/yearvar.Rd |only man/ymonmax.Rd | 10 man/ymonmean.Rd | 8 man/ymonmin.Rd | 8 man/ymonsd.Rd | 8 man/ymonsum.Rd | 12 man/yseasmax.Rd | 6 man/yseasmean.Rd | 6 man/yseasmin.Rd | 6 man/yseassd.Rd | 6 man/zonmean.Rd |only man/zonsum.Rd |only tests/spelling.R | 6 tests/spelling.Rout.save | 50 tests/testdata/SelpointRef_A.csv | 74 tests/testdata/SelpointRef_B.csv | 74 tests/testdata/ex_cmsaf.abs.nc |only tests/testdata/ex_dayx.nc |only tests/testdata/ex_fld_cor_covar_1.nc |only tests/testdata/ex_fld_cor_covar_2.nc |only tests/testdata/ex_gridboxx.nc |only tests/testdata/ex_hourx.nc |only tests/testdata/ex_mondaymean.nc |only tests/testdata/ex_run.nc |only tests/testdata/ex_tim_cor_covar_1.nc |only tests/testdata/ex_tim_cor_covar_2.nc |only tests/testdata/ex_timsel.nc |only tests/testthat/create_testdata.R | 242 +++ tests/testthat/helper.R | 16 tests/testthat/test_add_grid_info.R | 1252 +++++++-------- tests/testthat/test_box_mergetime.R | 2310 ++++++++++++++--------------- tests/testthat/test_change_att.R | 1384 ++++++++--------- tests/testthat/test_cmsaf.abs.R |only tests/testthat/test_cmsaf.add.R | 1934 ++++++++++++------------ tests/testthat/test_cmsaf.addc.R | 1954 ++++++++++++------------ tests/testthat/test_cmsaf.cat.R | 1558 +++++++++---------- tests/testthat/test_cmsaf.detrend.R |only tests/testthat/test_cmsaf.div.R | 1978 ++++++++++++------------- tests/testthat/test_cmsaf.divc.R | 1808 +++++++++++----------- tests/testthat/test_cmsaf.mul.R | 1944 ++++++++++++------------ tests/testthat/test_cmsaf.mulc.R | 1946 ++++++++++++------------ tests/testthat/test_cmsaf.regres.R |only tests/testthat/test_cmsaf.sub.R | 1890 ++++++++++++------------ tests/testthat/test_cmsaf.subc.R | 1934 ++++++++++++------------ tests/testthat/test_dayavg.R |only tests/testthat/test_daymax.R |only tests/testthat/test_daymean.R |only tests/testthat/test_daymin.R |only tests/testthat/test_daypctl.R |only tests/testthat/test_dayrange.R | 1256 +++++++-------- tests/testthat/test_daysd.R |only tests/testthat/test_daysum.R |only tests/testthat/test_dayvar.R |only tests/testthat/test_divdpm.R | 1180 +++++++-------- tests/testthat/test_extract.level.R | 2438 +++++++++++++++---------------- tests/testthat/test_fldcor.R |only tests/testthat/test_fldcovar.R |only tests/testthat/test_fldmax.R | 392 ++-- tests/testthat/test_fldmean.R | 390 ++-- tests/testthat/test_fldmin.R | 390 ++-- tests/testthat/test_fldrange.R |only tests/testthat/test_fldsd.R |only tests/testthat/test_fldsum.R |only tests/testthat/test_gridboxmax.R |only tests/testthat/test_gridboxmean.R |only tests/testthat/test_gridboxmin.R |only tests/testthat/test_gridboxrange.R |only tests/testthat/test_gridboxsd.R |only tests/testthat/test_gridboxsum.R |only tests/testthat/test_gridboxvar.R |only tests/testthat/test_hourmean.R |only tests/testthat/test_hoursum.R |only tests/testthat/test_levbox_mergetime.R | 192 +- tests/testthat/test_mermean.R |only tests/testthat/test_mon.anomaly.R | 226 +- tests/testthat/test_monavg.R |only tests/testthat/test_mondaymean.R |only tests/testthat/test_monmax.R | 412 ++--- tests/testthat/test_monmean.R | 410 ++--- tests/testthat/test_monmin.R | 410 ++--- tests/testthat/test_monpctl.R |only tests/testthat/test_monsd.R | 416 ++--- tests/testthat/test_monsum.R | 414 ++--- tests/testthat/test_monvar.R |only tests/testthat/test_muldpm.R | 178 +- tests/testthat/test_multimonmean.R | 178 +- tests/testthat/test_multimonsum.R | 180 +- tests/testthat/test_runmax.R |only tests/testthat/test_runmean.R |only tests/testthat/test_runmin.R |only tests/testthat/test_runrange.R |only tests/testthat/test_runsd.R |only tests/testthat/test_runsum.R |only tests/testthat/test_seasmean.R | 178 +- tests/testthat/test_seassd.R |only tests/testthat/test_seassum.R | 178 +- tests/testthat/test_seasvar.R |only tests/testthat/test_sellonlatbox.R | 2264 ++++++++++++++-------------- tests/testthat/test_selmon.R | 1834 +++++++++++------------ tests/testthat/test_selperiod.R | 1832 +++++++++++------------ tests/testthat/test_selpoint.R | 1728 ++++++++++----------- tests/testthat/test_selpoint.multi.R | 144 - tests/testthat/test_seltime.R | 1518 +++++++++---------- tests/testthat/test_selyear.R | 1832 +++++++++++------------ tests/testthat/test_timcor.R |only tests/testthat/test_timcovar.R |only tests/testthat/test_timmax.R | 1612 ++++++++++---------- tests/testthat/test_timmean.R | 1462 +++++++++--------- tests/testthat/test_timmin.R | 1612 ++++++++++---------- tests/testthat/test_timpctl.R | 1922 ++++++++++++------------ tests/testthat/test_timsd.R | 1608 ++++++++++---------- tests/testthat/test_timselmean.R |only tests/testthat/test_timselsum.R |only tests/testthat/test_timsum.R | 1460 +++++++++--------- tests/testthat/test_wfldmean.R | 382 ++-- tests/testthat/test_ydaymax.R |only tests/testthat/test_ydaymin.R |only tests/testthat/test_ydayrange.R |only tests/testthat/test_ydaysd.R |only tests/testthat/test_ydaysum.R |only tests/testthat/test_ydrunmean.R |only tests/testthat/test_ydrunsd.R |only tests/testthat/test_ydrunsum.R |only tests/testthat/test_year.anomaly.R | 386 ++-- tests/testthat/test_yearmax.R |only tests/testthat/test_yearmean.R | 388 ++-- tests/testthat/test_yearmin.R |only tests/testthat/test_yearrange.R |only tests/testthat/test_yearsd.R |only tests/testthat/test_yearsum.R | 396 ++--- tests/testthat/test_yearvar.R |only tests/testthat/test_ymonmax.R | 886 +++++------ tests/testthat/test_ymonmean.R | 408 ++--- tests/testthat/test_ymonmin.R | 408 ++--- tests/testthat/test_ymonsd.R | 414 ++--- tests/testthat/test_ymonsum.R | 408 ++--- tests/testthat/test_yseasmax.R | 404 ++--- tests/testthat/test_yseasmean.R | 404 ++--- tests/testthat/test_yseasmin.R | 404 ++--- tests/testthat/test_yseassd.R | 408 ++--- tests/testthat/test_zonmean.R |only tests/testthat/test_zonsum.R |only 484 files changed, 34296 insertions(+), 33266 deletions(-)
Title: Tools for Descriptive Statistics
Description: A toolbox for descriptive statistics, based on the computation of frequency and contingency tables. Several statistical functions and plot methods are provided to describe univariate or bivariate distributions of factors, integer series and numerical series either provided as individual values or as bins.
Author: Yves Croissant [aut, cre]
Maintainer: Yves Croissant <yves.croissant@univ-reunion.fr>
Diff between descstat versions 0.1-0 dated 2020-12-08 and 0.1-2 dated 2021-02-17
descstat-0.1-0/descstat/R/bins_table.R |only descstat-0.1-0/descstat/R/cls.R |only descstat-0.1-0/descstat/R/cont_tables.R |only descstat-0.1-0/descstat/R/generics.R |only descstat-0.1-0/descstat/R/indexes.R |only descstat-0.1-0/descstat/man/bins_table.Rd |only descstat-0.1-0/descstat/man/bins_table.methods.Rd |only descstat-0.1-0/descstat/man/cls2val.Rd |only descstat-0.1-0/descstat/man/generics.Rd |only descstat-0.1-0/descstat/man/indexes.Rd |only descstat-0.1-0/descstat/man/recut.Rd |only descstat-0.1-2/descstat/DESCRIPTION | 15 descstat-0.1-2/descstat/MD5 | 60 +- descstat-0.1-2/descstat/NAMESPACE | 76 +- descstat-0.1-2/descstat/NEWS.md |only descstat-0.1-2/descstat/R/bin.R |only descstat-0.1-2/descstat/R/bivariate.R |only descstat-0.1-2/descstat/R/cont_table.R |only descstat-0.1-2/descstat/R/datasets.R | 116 ++- descstat-0.1-2/descstat/R/descstat.R |only descstat-0.1-2/descstat/R/freq_table.R | 356 +++++++++--- descstat-0.1-2/descstat/R/pre_plot.R | 163 ++--- descstat-0.1-2/descstat/R/print_methods.R |only descstat-0.1-2/descstat/R/univariate.R |only descstat-0.1-2/descstat/data/income.rda |only descstat-0.1-2/descstat/data/rgp.rda |binary descstat-0.1-2/descstat/inst/doc/descstat.R | 181 +++--- descstat-0.1-2/descstat/inst/doc/descstat.Rmd | 579 +++++++++++-------- descstat-0.1-2/descstat/inst/doc/descstat.html | 645 ++++++++++++---------- descstat-0.1-2/descstat/man/bin.Rd |only descstat-0.1-2/descstat/man/bivariate.Rd |only descstat-0.1-2/descstat/man/cont_table.Rd | 127 +--- descstat-0.1-2/descstat/man/descstat-package.Rd |only descstat-0.1-2/descstat/man/employment.Rd | 30 - descstat-0.1-2/descstat/man/freq_table.Rd | 115 ++- descstat-0.1-2/descstat/man/income.Rd |only descstat-0.1-2/descstat/man/padova.Rd | 25 descstat-0.1-2/descstat/man/pre_plot.Rd | 73 +- descstat-0.1-2/descstat/man/print_methods.Rd |only descstat-0.1-2/descstat/man/reexports.Rd |only descstat-0.1-2/descstat/man/rgp.Rd | 16 descstat-0.1-2/descstat/man/univariate.Rd |only descstat-0.1-2/descstat/man/wages.Rd | 19 descstat-0.1-2/descstat/vignettes/descstat.Rmd | 579 +++++++++++-------- 44 files changed, 1892 insertions(+), 1283 deletions(-)
Title: Spatial Regression Models for Large Datasets using Nearest
Neighbor Gaussian Processes
Description: Fits univariate Bayesian spatial regression models for large datasets using Nearest Neighbor Gaussian Processes (NNGP) detailed in Finley, Datta, Banerjee (2020) <arXiv:2001.09111>, and Finley, Datta, Cook, Morton, Andersen, and Banerjee (2019) <doi:10.1080/10618600.2018.1537924> and Datta, Banerjee, Finley, and Gelfand (2016) <doi:10.1080/01621459.2015.1044091>.
Author: Andrew Finley [aut, cre],
Abhirup Datta [aut],
Sudipto Banerjee [aut]
Maintainer: Andrew Finley <finleya@msu.edu>
Diff between spNNGP versions 0.1.4 dated 2020-03-30 and 0.1.5 dated 2021-02-17
DESCRIPTION | 10 +++++----- MD5 | 13 +++++++------ build |only man/predict.NNGP.Rd | 6 +++--- man/spConjNNGP.Rd | 6 +++--- man/spNNGP.Rd | 8 ++++---- src/rNNGPPredict.cpp | 4 ++-- src/sNNGPPredict.cpp | 4 ++-- 8 files changed, 26 insertions(+), 25 deletions(-)
Title: Kernel Operations on GPU or CPU, with Autodiff, without Memory
Overflows
Description: The 'KeOps' library lets you compute generic reductions of very
large arrays whose entries are given by a mathematical formula with CPU and
GPU computing support. It combines a tiled reduction scheme with an
automatic differentiation engine. It is perfectly suited to the efficient
computation of Kernel dot products and the associated gradients, even when
the full kernel matrix does not fit into the GPU memory.
Author: Benjamin Charlier [aut] (<http://imag.umontpellier.fr/~charlier/>),
Jean Feydy [aut] (<https://www.math.ens.fr/~feydy/>),
Joan A. Glaunès [aut] (<https://www.mi.parisdescartes.fr/~glaunes/>),
Ghislain Durif [aut, cre] (<https://gdurif.perso.math.cnrs.fr/>),
François-David Collin [ctb] (Development-related consulting and
support),
Daniel Frey [ctb] (Author of the included C++ library 'sequences')
Maintainer: Ghislain Durif <gd.dev@libertymail.net>
Diff between rkeops versions 1.4.2 dated 2021-02-16 and 1.4.2.2 dated 2021-02-17
DESCRIPTION | 8 MD5 | 17 R/common-check.R | 87 ++- R/common-get_cmake.R | 2 R/utils.R | 23 R/zzz.R | 4 inst/doc/introduction_to_rkeops.html | 517 ++++++++------------- inst/doc/using_rkeops.html | 846 ++++++++++++++--------------------- man/check_cmake.Rd | 2 man/msg_or_error.Rd |only 10 files changed, 653 insertions(+), 853 deletions(-)
Title: R Wrapper for Istanbul Municipality Open Data Portal
Description: Call wrappers for Istanbul Metropolitan
Municipality's Open Data Portal (Turkish: İstanbul Büyükşehir
Belediyesi Açık Veri Portalı) at <https://data.ibb.gov.tr/en/>.
Author: Berk Orbay [aut, cre],
Emrah Er [ctb]
Maintainer: Berk Orbay <orbayb@mef.edu.tr>
Diff between ibb versions 0.0.1 dated 2020-05-11 and 0.0.2 dated 2021-02-17
DESCRIPTION | 36 +++-- MD5 | 47 ++++--- NAMESPACE | 21 +++ R/data-calls.R | 115 +++++++++---------- R/data-sets.R | 6 R/fundamental-functions.R | 46 ++++--- R/ibb-package.R |only R/support-functions.R | 101 ++++++++-------- R/utils-pipe.R |only R/utils-tidy-eval.R |only R/zzz.R | 11 - README.md |only man/call_data_ibb.Rd | 6 man/get_all_detailed_info.Rd | 2 man/get_data_frame_ibb.Rd | 8 + man/get_detailed_info_on_data_source.Rd | 7 - man/get_environmental_monitoring_and_control_data.Rd | 7 - man/get_ibb_wifi_daily_data_usage.Rd | 5 man/get_ibb_wifi_daily_new_subscribers.Rd | 5 man/get_ibb_wifi_new_subscribers_by_location.Rd | 5 man/get_iski_call_center_complaint_stats.Rd | 9 - man/get_ispark_locations.Rd | 5 man/get_park_garden_green_area_data.Rd | 7 - man/ibb-package.Rd |only man/ibb_data_sources.Rd | 4 man/pipe.Rd |only man/tidyeval.Rd |only tests/testthat/test-data-pull.R | 4 28 files changed, 260 insertions(+), 197 deletions(-)
Title: Phase I Control Charts (with Emphasis on Distribution-Free
Methods)
Description: Statistical methods for retrospectively detecting changes
in location and/or dispersion of univariate and multivariate
variables. Data values are assumed to be independent, can be
individual (one observation at each instant of time) or subgrouped
(more than one observation at each instant of time).
Control limits are computed, often using a permutation approach,
so that a prescribed false alarm probability is guaranteed
without making any parametric assumptions on the stable
(in-control) distribution. See G. Capizzi and G. Masarotto (2018)
<doi:10.1007/978-3-319-75295-2> for an introduction to the package.
Author: Giovanna Capizzi and Guido Masarotto
Maintainer: Giovanna Capizzi <giovanna.capizzi@unipd.it>
Diff between dfphase1 versions 1.1.1 dated 2017-01-13 and 1.1.3 dated 2021-02-17
dfphase1-1.1.1/dfphase1/NEWS |only dfphase1-1.1.1/dfphase1/src/rsp.c |only dfphase1-1.1.3/dfphase1/DESCRIPTION | 17 +++- dfphase1-1.1.3/dfphase1/MD5 | 46 +++++----- dfphase1-1.1.3/dfphase1/NEWS.md |only dfphase1-1.1.3/dfphase1/R/RcppExports.R | 102 ++++++++++++------------ dfphase1-1.1.3/dfphase1/R/glr.R | 4 dfphase1-1.1.3/dfphase1/R/mshewhart.R | 4 dfphase1-1.1.3/dfphase1/R/rsp.R | 14 +-- dfphase1-1.1.3/dfphase1/R/shewhart.R | 6 - dfphase1-1.1.3/dfphase1/build/partial.rdb |binary dfphase1-1.1.3/dfphase1/man/changepoint.Rd | 19 ++-- dfphase1-1.1.3/dfphase1/man/colonscopy.Rd | 3 dfphase1-1.1.3/dfphase1/man/dfphase1-package.Rd | 41 ++++++--- dfphase1-1.1.3/dfphase1/man/fe.Rd | 6 - dfphase1-1.1.3/dfphase1/man/gravel.Rd | 8 + dfphase1-1.1.3/dfphase1/man/mphase1-methods.Rd | 4 dfphase1-1.1.3/dfphase1/man/mphase1.Rd | 4 dfphase1-1.1.3/dfphase1/man/mshewhart.Rd | 17 ++-- dfphase1-1.1.3/dfphase1/man/rsp.Rd | 3 dfphase1-1.1.3/dfphase1/man/shewhart.Rd | 15 ++- dfphase1-1.1.3/dfphase1/src/RcppExports.cpp | 69 +++++++++++++--- dfphase1-1.1.3/dfphase1/src/lars.cpp | 8 - dfphase1-1.1.3/dfphase1/src/mphase1.cpp | 6 - dfphase1-1.1.3/dfphase1/src/rsp.cpp |only dfphase1-1.1.3/dfphase1/src/shewhart.cpp | 19 +++- 26 files changed, 264 insertions(+), 151 deletions(-)
Title: An Arsenal of 'R' Functions for Large-Scale Statistical
Summaries
Description: An Arsenal of 'R' functions for large-scale statistical summaries,
which are streamlined to work within the latest reporting tools in 'R' and
'RStudio' and which use formulas and versatile summary statistics for summary
tables and models. The primary functions include tableby(), a Table-1-like
summary of multiple variable types 'by' the levels of one or more categorical
variables; paired(), a Table-1-like summary of multiple variable types paired across
two time points; modelsum(), which performs simple model fits on one or more endpoints
for many variables (univariate or adjusted for covariates);
freqlist(), a powerful frequency table across many categorical variables;
comparedf(), a function for comparing data.frames; and
write2(), a function to output tables to a document.
Author: Ethan Heinzen [aut, cre],
Jason Sinnwell [aut],
Elizabeth Atkinson [aut],
Tina Gunderson [aut],
Gregory Dougherty [aut],
Patrick Votruba [ctb],
Ryan Lennon [ctb],
Andrew Hanson [ctb],
Krista Goergen [ctb],
Emily Lundt [ctb],
Brendan Broderick [ctb],
Maddie McCullough [art]
Maintainer: Ethan Heinzen <heinzen.ethan@mayo.edu>
Diff between arsenal versions 3.6.1 dated 2021-02-06 and 3.6.2 dated 2021-02-17
DESCRIPTION | 8 ++--- MD5 | 18 ++++++------- NEWS.md | 6 ++++ inst/doc/modelsum.html | 50 ++++++++++++++++++++----------------- inst/doc/tableby.Rmd | 2 - inst/doc/tableby.html | 2 - tests/testthat/test_lhs_modelsum.R | 30 +++++++++++----------- tests/testthat/test_modelsum.R | 8 ++--- tests/testthat/test_write2.R | 1 vignettes/tableby.Rmd | 2 - 10 files changed, 70 insertions(+), 57 deletions(-)
Title: NHS Data Dictionary Toolset for NHS Lookups
Description: Providing a common set of simplified web scraping tools for working with the NHS Data Dictionary <https://datadictionary.nhs.uk/data_elements_overview.html>.
The intended usage is to access the data elements section of the NHS Data Dictionary to access key lookups.
The benefits of having it in this package are that the lookups are the live lookups on the website and will not need to be maintained.
This package was commissioned by the NHS-R community to provide this consistency of lookups.
Author: Gary Hutson
Maintainer: Gary Hutson <g.hutson@nhs.net>
Diff between NHSDataDictionaRy versions 1.2.0 dated 2021-02-02 and 1.2.1 dated 2021-02-17
DESCRIPTION | 8 +- MD5 | 19 ++-- R/nhs_data_elements.R | 2 R/tableR.R | 2 README.md |only build/vignette.rds |binary inst/doc/introduction.R | 45 +++++++++-- inst/doc/introduction.Rmd | 61 ++++++++++++--- inst/doc/introduction.html | 172 ++++++++++++++++++++++++++------------------- man/nhs_data_elements.Rd | 1 vignettes/introduction.Rmd | 61 ++++++++++++--- 11 files changed, 248 insertions(+), 123 deletions(-)
More information about NHSDataDictionaRy at CRAN
Permanent link
Title: 'Dang' Associated New Goodies
Description: A collection of utility functions.
Author: Dirk Eddelbuettel with contributions by Brodie Gaslam, Kevin Denny,
Kabira Namit, Colin Gillespie, R Core, Josh Ulrich, and others.
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between dang versions 0.0.12 dated 2020-10-14 and 0.0.13 dated 2021-02-17
ChangeLog | 42 ++++++++++++++++++++++++++++++++++++++++++ DESCRIPTION | 11 ++++++----- MD5 | 20 +++++++++++--------- NAMESPACE | 3 +-- R/intradayMarketMonitor.R |only R/muteTweets.R | 6 +++--- R/objects.R | 2 +- README.md | 2 ++ inst/NEWS.Rd | 9 +++++++++ man/checkPackageAsciiCode.Rd | 2 +- man/intradayMarketMonitor.Rd |only man/muteTweeters.Rd | 6 +++--- 12 files changed, 79 insertions(+), 24 deletions(-)
Title: Graph-Constrained Functional Pruning Optimal Partitioning
Description: Penalized parametric change-point detection by functional pruning dynamic programming algorithm.
The successive means are constrained using a graph structure with edges of types null, up, down, std or abs. To each edge we can associate some additional properties: a minimal gap size, a penalty, some robust parameters (K,a). The user can also constrain the inferred means to lie between some minimal and maximal values. Data is modeled by a quadratic cost with possible use of a robust loss, biweight and Huber (see edge parameters K and a). Other losses are also available with log-linear representation or a log-log representation.
Author: Vincent Runge [aut, cre],
Toby Hocking [aut],
Guillem Rigaill [aut],
Daniel Grose [aut],
Gaetano Romano [aut],
Fatemeh Afghah [aut],
Paul Fearnhead [aut],
Michel Koskas [ctb],
Arnaud Liehrmann [ctb]
Maintainer: Vincent Runge <vincent.runge@univ-evry.fr>
Diff between gfpop versions 1.0.2 dated 2020-12-01 and 1.0.3 dated 2021-02-17
gfpop-1.0.2/gfpop/data |only gfpop-1.0.2/gfpop/man/ECG.Rd |only gfpop-1.0.2/gfpop/man/Mono27ac.Rd |only gfpop-1.0.2/gfpop/man/neuroSpike.Rd |only gfpop-1.0.2/gfpop/man/profile614chr2.Rd |only gfpop-1.0.3/gfpop/DESCRIPTION | 8 +++++--- gfpop-1.0.3/gfpop/LICENSE | 2 +- gfpop-1.0.3/gfpop/MD5 | 12 ++---------- 8 files changed, 8 insertions(+), 14 deletions(-)
Title: Utilities for the Forest Research Institute of the State
Baden-Wuerttemberg
Description: Miscellaneous utilities, tools and helper
functions for finding and searching files on disk, searching for and
removing R objects from the workspace.
These are utilities for packages
<https://CRAN.R-project.org/package=cleanr>,
<https://CRAN.R-project.org/package=document>,
<https://CRAN.R-project.org/package=fakemake>,
<https://CRAN.R-project.org/package=packager> and
<https://CRAN.R-project.org/package=rasciidoc>.
Does not import or depend on any third party party package, but on core R
only (i.e it may depend on packages with priority 'base').
Author: Andreas Dominik Cullmann [aut, cre]
Maintainer: Andreas Dominik Cullmann <fvafrcu@mailbox.org>
Diff between fritools versions 1.2.0 dated 2021-01-27 and 1.3.0 dated 2021-02-17
fritools-1.2.0/fritools/inst/doc/An_Introduction_to_fritools.Rasciidoc |only fritools-1.2.0/fritools/vignettes/An_Introduction_to_fritools.Rasciidoc |only fritools-1.3.0/fritools/DESCRIPTION | 16 fritools-1.3.0/fritools/MD5 | 61 fritools-1.3.0/fritools/NAMESPACE | 8 fritools-1.3.0/fritools/NEWS.md | 18 fritools-1.3.0/fritools/R/compare_vectors.R | 5 fritools-1.3.0/fritools/R/get_unique_string.R |only fritools-1.3.0/fritools/R/is_of_length_zero.R |only fritools-1.3.0/fritools/R/is_r_cmd_check.R |only fritools-1.3.0/fritools/R/paths.R |only fritools-1.3.0/fritools/R/r.R | 5 fritools-1.3.0/fritools/R/test_helpers.R | 119 - fritools-1.3.0/fritools/R/touch.R | 2 fritools-1.3.0/fritools/R/with_dir.R |only fritools-1.3.0/fritools/R/zzz.R |only fritools-1.3.0/fritools/build/vignette.rds |binary fritools-1.3.0/fritools/inst/NEWS.rd | 20 fritools-1.3.0/fritools/inst/doc/An_Introduction_to_fritools.Rmd |only fritools-1.3.0/fritools/inst/doc/An_Introduction_to_fritools.html | 1047 ++-------- fritools-1.3.0/fritools/inst/runit_tests/runit-batch.R | 2 fritools-1.3.0/fritools/inst/runit_tests/runit-compare_vectors.R | 18 fritools-1.3.0/fritools/inst/runit_tests/runit-get_unique_string.R |only fritools-1.3.0/fritools/inst/runit_tests/runit-importing.R | 12 fritools-1.3.0/fritools/inst/runit_tests/runit-is_of_length_zero.R |only fritools-1.3.0/fritools/inst/runit_tests/runit-r.R | 90 fritools-1.3.0/fritools/inst/runit_tests/runit-test_helpers.R | 9 fritools-1.3.0/fritools/inst/runit_tests/runit-with_dir.R |only fritools-1.3.0/fritools/inst/vignettes_code |only fritools-1.3.0/fritools/man/get_boolean_envvar.Rd |only fritools-1.3.0/fritools/man/get_run_r_tests.Rd | 19 fritools-1.3.0/fritools/man/get_unique_string.Rd |only fritools-1.3.0/fritools/man/is_of_length_zero.Rd |only fritools-1.3.0/fritools/man/is_r_cmd_check.Rd |only fritools-1.3.0/fritools/man/is_running_on_fvafrcu_machines.Rd | 5 fritools-1.3.0/fritools/man/is_running_on_gitlab_com.Rd | 2 fritools-1.3.0/fritools/man/paths.Rd |only fritools-1.3.0/fritools/man/r_cmd_install.Rd | 2 fritools-1.3.0/fritools/man/run_r_tests_for_known_hosts.Rd |only fritools-1.3.0/fritools/man/set_run_r_tests.Rd | 4 fritools-1.3.0/fritools/man/with_dir.Rd |only fritools-1.3.0/fritools/vignettes/An_Introduction_to_fritools.Rmd |only 42 files changed, 526 insertions(+), 938 deletions(-)
Title: Cross-Validation for Model Selection
Description: Cross-validate one or multiple regression and classification models
and get relevant evaluation metrics in a tidy format. Validate the
best model on a test set and compare it to a baseline evaluation.
Alternatively, evaluate predictions from an external model. Currently
supports regression and classification (binary and multiclass).
Described in chp. 5 of Jeyaraman, B. P., Olsen, L. R.,
& Wambugu M. (2019, ISBN: 9781838550134).
Author: Ludvig Renbo Olsen [aut, cre],
Benjamin Hugh Zachariae [aut]
Maintainer: Ludvig Renbo Olsen <r-pkgs@ludvigolsen.dk>
Diff between cvms versions 1.2.0 dated 2020-10-18 and 1.2.1 dated 2021-02-17
DESCRIPTION | 6 - MD5 | 18 ++--- NEWS.md | 10 ++- R/plot_confusion_matrix.R | 7 +- R/plotting_utilities.R | 15 +++- build/cvms.pdf |binary inst/doc/Creating_a_confusion_matrix.html | 66 ------------------- inst/doc/available_metrics.html | 7 +- inst/doc/cross_validating_custom_functions.html | 80 +++--------------------- inst/doc/evaluate_by_id.html | 66 ------------------- 10 files changed, 58 insertions(+), 217 deletions(-)
Title: R6 Mathematical Sets Interface
Description: An object-oriented package for mathematical sets, upgrading the current gold-standard {sets}. Many forms of mathematical sets are implemented, including (countably finite) sets, tuples, intervals (countably infinite or uncountable), and fuzzy variants. Wrappers extend functionality by allowing symbolic representations of complex operations on sets, including unions, (cartesian) products, exponentiation, and differences (asymmetric and symmetric).
Author: Raphael Sonabend [aut, cre] (<https://orcid.org/0000-0001-9225-4654>),
Franz Kiraly [aut]
Maintainer: Raphael Sonabend <raphael.sonabend.15@ucl.ac.uk>
Diff between set6 versions 0.2.0 dated 2020-11-06 and 0.2.1 dated 2021-02-17
DESCRIPTION | 7 MD5 | 27 - NEWS.md | 7 R/Set_ConditionalSet.R | 19 R/Set_Interval.R | 40 + R/operation_setcomplement.R | 16 README.md | 29 - inst/CITATION |only inst/doc/set6.html | 577 ++++++++----------------- man/ConditionalSet.Rd | 4 tests/testthat/test_operations_setcomplement.R | 12 tests/testthat/test_operations_setproduct.R | 4 tests/testthat/test_operations_setunion.R | 2 tests/testthat/test_set_conditionalset.R | 4 tests/testthat/test_setwrapper_productset.R | 4 15 files changed, 310 insertions(+), 442 deletions(-)
Title: Stock Assessment Methods Toolkit
Description: Simulation tools for closed-loop simulation are provided for the 'MSEtool' operating model to inform data-rich fisheries.
'SAMtool' provides a conditioning model, assessment models of varying complexity with standardized reporting,
model-based management procedures, and diagnostic tools for evaluating assessments inside closed-loop simulation.
Author: Quang Huynh [aut, cre],
Tom Carruthers [aut],
Adrian Hordyk [aut]
Maintainer: Quang Huynh <quang@bluematterscience.com>
Diff between SAMtool versions 1.1.0 dated 2021-02-02 and 1.1.1 dated 2021-02-17
DESCRIPTION | 15 - MD5 | 36 +-- NEWS.md | 3 R/Misc_fun.R | 81 ++++---- R/assess_SP.R | 11 + R/assess_cDD.R | 10 + R/report_SP.R | 12 + README.md |only data/swordfish.rda |binary inst/doc/Delay_difference.html | 228 +---------------------- inst/doc/RCM.html | 260 +++------------------------ inst/doc/RCM_eq.html | 226 +---------------------- inst/doc/RCM_sel.html | 372 +++++++++------------------------------ inst/doc/SAMtool.html | 272 +++------------------------- inst/doc/SCA.html | 228 +---------------------- inst/doc/Surplus_production.html | 228 +---------------------- inst/doc/VPA.html | 228 +---------------------- inst/include/RCM.hpp | 2 inst/include/ns/ns_SP.hpp | 35 ++- man/figures |only 20 files changed, 362 insertions(+), 1885 deletions(-)
Title: Geographically-Weighted Models
Description: Techniques from a particular branch of spatial statistics,termed geographically-weighted (GW) models. GW models suit situations when data are not described well by some global model, but where there are spatial regions where a suitably localised calibration provides a better description. 'GWmodel' includes functions to calibrate: GW summary statistics (Brunsdon et al., 2002)<doi: 10.1016/s0198-9715(01)00009-6>, GW principal components analysis (Harris et al., 2011)<doi: 10.1080/13658816.2011.554838>, GW discriminant analysis (Brunsdon et al., 2007)<doi: 10.1111/j.1538-4632.2007.00709.x> and various forms of GW regression (Brunsdon et al., 1996)<doi: 10.1111/j.1538-4632.1996.tb00936.x>; some of which are provided in basic and robust (outlier resistant) forms.
Author: Binbin Lu[aut], Paul Harris[aut], Martin Charlton[aut], Chris Brunsdon[aut], Tomoki Nakaya[aut], Daisuke Murakami[aut],Isabella Gollini[ctb], Yigong Hu[ctb], Fiona H Evans[ctb]
Maintainer: Binbin Lu <binbinlu@whu.edu.cn>
Diff between GWmodel versions 2.2-3 dated 2021-02-07 and 2.2-4 dated 2021-02-17
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/zzz.r | 2 +- man/GWmodel-package.Rd | 4 ++-- src/RcppExports.cpp | 2 +- 5 files changed, 12 insertions(+), 12 deletions(-)
Title: Read Large Text Files
Description: Read large text files by splitting them in smaller files.
Package 'bigreadr' also provides some convenient wrappers around fread()
and fwrite() from package 'data.table'.
Author: Florian Privé [aut, cre]
Maintainer: Florian Privé <florian.prive.21@gmail.com>
Diff between bigreadr versions 0.2.0 dated 2019-10-18 and 0.2.2 dated 2021-02-17
DESCRIPTION | 10 MD5 | 54 ++-- NAMESPACE | 38 +-- R/RcppExports.R | 22 - R/bigreadr-package.R | 10 R/bind.R | 98 +++---- R/nlines-split.R | 144 +++++------ R/read.R | 408 ++++++++++++++++----------------- R/zzz.R | 34 +- README.md | 110 ++++---- inst/WORDLIST | 16 - inst/testdata/cars_with_newline.csv | 102 ++++---- inst/testdata/cars_without_newline.csv | 100 ++++---- man/big_fread1.Rd | 64 ++--- man/big_fread2.Rd | 80 +++--- man/bigreadr-package.Rd | 50 ++-- man/cbind_df.Rd | 46 +-- man/fread2.Rd | 64 ++--- man/fwrite2.Rd | 64 ++--- man/nlines.Rd | 44 +-- man/rbind_df.Rd | 46 +-- man/split_file.Rd | 94 +++---- tests/spelling.R | 2 tests/testthat.R | 8 tests/testthat/test-bind.R | 150 ++++++------ tests/testthat/test-nlines.R | 66 ++--- tests/testthat/test-read.R | 238 +++++++++---------- tests/testthat/test-split.R | 184 +++++++------- 28 files changed, 1174 insertions(+), 1172 deletions(-)
Title: Interface to 'Azure Resource Manager'
Description: A lightweight but powerful R interface to the 'Azure Resource Manager' REST API. The package exposes a comprehensive class framework and related tools for creating, updating and deleting 'Azure' resource groups, resources and templates. While 'AzureRMR' can be used to manage any 'Azure' service, it can also be extended by other packages to provide extra functionality for specific services. Part of the 'AzureR' family of packages.
Author: Hong Ooi [aut, cre],
Microsoft [cph]
Maintainer: Hong Ooi <hongooi73@gmail.com>
Diff between AzureRMR versions 2.4.0 dated 2021-01-15 and 2.4.1 dated 2021-02-17
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ NEWS.md | 5 +++++ R/az_resgroup.R | 2 +- R/az_resource.R | 31 ++++++++++++++++--------------- tests/testthat/test04_resource.R | 28 ++++++++++++++++++++++++++-- tests/testthat/test06_rbac.R | 12 +++++++++--- 7 files changed, 66 insertions(+), 30 deletions(-)
Title: Match One Sample using Two Criteria
Description: Multivariate matching in observational studies typically has two goals: 1. to construct
treated and control groups that have similar distribution of observed covariates and 2. to produce
matched pairs or sets that are homogeneous in a few priority variables. This packages implements a
network-flow-based method built around a tripartite graph that can simultaneously achieve both goals.
A detailed explanation of the workflow and numerous examples are given in the vignette.
Author: Bo Zhang [aut, cre]
Maintainer: Bo Zhang <bozhan@wharton.upenn.edu>
Diff between match2C versions 0.1.0 dated 2020-05-12 and 1.1.0 dated 2021-02-17
match2C-0.1.0/match2C/src/try.cpp |only match2C-1.1.0/match2C/DESCRIPTION | 22 ++- match2C-1.1.0/match2C/MD5 | 56 ++++++---- match2C-1.1.0/match2C/NAMESPACE | 12 +- match2C-1.1.0/match2C/R/RcppExports.R | 6 - match2C-1.1.0/match2C/R/check_balance.R |only match2C-1.1.0/match2C/R/construct_outcome.R | 9 - match2C-1.1.0/match2C/R/create_list_from_mat.R | 32 ----- match2C-1.1.0/match2C/R/create_list_from_scratch.R | 8 - match2C-1.1.0/match2C/R/create_list_from_scratch_overall.R | 25 ---- match2C-1.1.0/match2C/R/dt_Rouse.R | 1 match2C-1.1.0/match2C/R/match2C-package.R |only match2C-1.1.0/match2C/R/match_2C.R |only match2C-1.1.0/match2C/R/match_2C_list.R | 32 +---- match2C-1.1.0/match2C/R/match_2C_mat.R | 42 +++---- match2C-1.1.0/match2C/R/solve_network_flow.R | 5 match2C-1.1.0/match2C/R/unload.R |only match2C-1.1.0/match2C/build |only match2C-1.1.0/match2C/inst |only match2C-1.1.0/match2C/man/check_balance.Rd |only match2C-1.1.0/match2C/man/construct_outcome.Rd | 7 - match2C-1.1.0/match2C/man/create_list_from_mat.Rd | 31 ----- match2C-1.1.0/match2C/man/create_list_from_scratch.Rd | 6 - match2C-1.1.0/match2C/man/create_list_from_scratch_overall.Rd | 27 ---- match2C-1.1.0/match2C/man/dt_Rouse.Rd | 9 + match2C-1.1.0/match2C/man/match_2C.Rd |only match2C-1.1.0/match2C/man/match_2C_list.Rd | 27 ---- match2C-1.1.0/match2C/man/match_2C_mat.Rd | 36 +++--- match2C-1.1.0/match2C/man/revert_dist_list_cpp.Rd | 4 match2C-1.1.0/match2C/man/solve_network_flow.Rd | 6 - match2C-1.1.0/match2C/src/RcppExports.cpp | 18 --- match2C-1.1.0/match2C/src/init.c |only match2C-1.1.0/match2C/src/revert_list.cpp |only match2C-1.1.0/match2C/vignettes |only 34 files changed, 136 insertions(+), 285 deletions(-)
Title: Simple and Fast ROC Curves
Description: A set of functions for receiver operating characteristic (ROC) curve
estimation and area under the curve (AUC) calculation.
All functions are designed to work with aggregated data;
nevertheless, they can also handle raw samples.
In 'ROCket', we distinguish two types of ROC curve representations:
1) parametric curves - the true positive rate (TPR) and the false positive rate (FPR)
are functions of a parameter (the score),
2) functions - TPR is a function of FPR.
There are several ROC curve estimation methods available. An introduction to
the mathematical background of the implemented methods (and much more) can be found in
de Zea Bermudez, Gonçalves, Oliveira & Subtil (2014) <https://www.ine.pt/revstat/pdf/rs140101.pdf>
and Cai & Pepe (2004) <doi:10.1111/j.0006-341X.2004.00200.x>.
Author: Daniel Lazar [aut, cre]
Maintainer: Daniel Lazar <da-zar@gmx.net>
Diff between ROCket versions 1.0.0 dated 2021-02-11 and 1.0.1 dated 2021-02-17
DESCRIPTION | 6 +++--- MD5 | 15 +++++++++------ NAMESPACE | 1 + R/ROCket.R | 2 +- R/utils.R | 18 +++++++++--------- README.md | 27 +++++++++++++-------------- man/figures |only tests/testthat/test-auc.R | 7 +++++-- 8 files changed, 41 insertions(+), 35 deletions(-)
Title: Question Generation in the 'MyLearn' XML Format
Description: Randomized multiple-select and single-select
question generation for the 'MyLearn' teaching and learning
platform. Question templates
in the form of the R/exams package (see <http://www.r-exams.org/>)
are transformed into XML format required by 'MyLearn'.
Author: Darjus Hosszejni [aut, cre] (<https://orcid.org/0000-0002-3803-691X>)
Maintainer: Darjus Hosszejni <darjus.hosszejni@wu.ac.at>
Diff between exams.mylearn versions 1.2 dated 2020-10-09 and 1.3 dated 2021-02-17
DESCRIPTION | 10 MD5 | 44 +- NAMESPACE | 57 +- R/example_paths.R | 56 -- R/exams.mylearn-package.R | 55 -- R/exams2mylearn.R | 456 ++++++++++------------ build/vignette.rds |binary inst/doc/workflow.R | 88 ++-- inst/doc/workflow.Rmd | 360 +++++++++-------- inst/doc/workflow.html | 744 ++++++++++++++----------------------- inst/extdata/R-code.Rmd | 68 +-- inst/extdata/R-output.Rmd | 54 +- inst/extdata/R-table.Rmd | 62 +-- inst/extdata/bullet-points.Rmd | 74 +-- inst/extdata/everything.Rmd | 106 ++--- inst/extdata/plot.Rmd | 58 +- inst/extdata/single-choice.Rmd | 68 +-- inst/extdata/template-multiple.xml | 32 - inst/extdata/template-single.xml | 32 - man/example_paths.Rd | 38 - man/exams.mylearn-package.Rd | 26 - man/exams2mylearn.Rd | 158 +++---- vignettes/workflow.Rmd | 360 +++++++++-------- 23 files changed, 1416 insertions(+), 1590 deletions(-)
Title: Vehicular Emissions Inventories
Description: Elaboration of vehicular emissions inventories,
consisting in four stages, pre-processing activity data, preparing
emissions factors, estimating the emissions and post-processing of emissions
in maps and databases. More details in Ibarra-Espinosa et al (2018) <doi:10.5194/gmd-11-2209-2018>.
Before using VEIN you need to know the vehicular composition of your study area, in other words,
the combination of of type of vehicles, size and fuel of the fleet. Then, it is recommended to
start with the project to download a template to create a structure of directories and scripts.
Author: Sergio Ibarra-Espinosa [aut, cre, wdc]
(<https://orcid.org/0000-0002-3162-1905>)
Maintainer: Sergio Ibarra-Espinosa <sergio.ibarra@usp.br>
Diff between vein versions 0.9.1 dated 2021-02-10 and 0.9.1.2 dated 2021-02-17
DESCRIPTION | 8 MD5 | 20 - NEWS.md | 3 R/emis.R | 605 ++++++++++++++++++-------------- R/emis_cold_td.R | 643 ++++++++++++++++++---------------- R/emis_hot_td.R | 947 +++++++++++++++++++++++++++------------------------ inst/doc/basics.html | 4 man/emis.Rd | 153 ++++---- man/emis_cold_td.Rd | 101 +++-- man/emis_hot_td.Rd | 227 +++++++----- src/init.c | 127 +++--- 11 files changed, 1571 insertions(+), 1267 deletions(-)
Title: Image Processing for Simulated Cameras
Description: Uses convolution-based techniques to generate simulated camera bokeh, depth of field, and other camera effects, using an image and an optional depth map. Accepts both filename inputs and in-memory array representations of images and matrices. Includes functions to perform 2D convolutions, reorient and resize images/matrices, add image overlays, generate camera vignette effects, and add titles to images.
Author: Tyler Morgan-Wall
Maintainer: Tyler Morgan-Wall <tylermw@gmail.com>
Diff between rayimage versions 0.3.1 dated 2020-06-28 and 0.5.1 dated 2021-02-17
DESCRIPTION | 10 +++--- MD5 | 45 +++++++++++++++++---------- NAMESPACE | 2 + R/RcppExports.R | 8 +++- R/add_image_overlay.R | 66 ++++++++++++++++++++++++++++++++++++----- R/add_padding.R |only R/add_title.R | 32 ++++++++++++++----- R/generate_2d_disk.R | 28 +++++++++++++++-- R/generate_2d_exponential.R | 20 +++++++++--- R/generate_2d_gaussian.R | 20 +++++++++--- R/plot_image.R | 8 ++++ R/render_convolution.R | 52 ++++++++++++++++++++++---------- R/render_convolution_fft.R |only R/render_distance.R |only man/add_multi_padding.Rd |only man/add_padding.Rd |only man/add_title.Rd | 7 +++- man/expand_to_fit.Rd |only man/generate_2d_disk.Rd | 6 ++- man/generate_2d_exponential.Rd | 4 +- man/generate_2d_gaussian.Rd | 4 +- man/pad_to_fit.Rd |only man/render_boolean_distance.Rd |only man/render_convolution.Rd | 20 +++++++++++- man/render_convolution_fft.Rd |only man/trim_padding.Rd |only src/RcppExports.cpp | 22 +++++++++++-- src/bool_distance.cpp |only src/pointspread.cpp | 28 +++++++++++++---- 29 files changed, 294 insertions(+), 88 deletions(-)
More information about matrixprofiler at CRAN
Permanent link
Title: Linkage Disequilibrium Shrinkage Estimation for Polyploids
Description: Estimate haplotypic or composite pairwise linkage disequilibrium
(LD) in polyploids, using either genotypes or genotype likelihoods.
Support is provided to estimate the popular measures of LD: the LD
coefficient D, the standardized LD coefficient D', and the Pearson
correlation coefficient r. All estimates are returned with corresponding
standard errors. These estimates and standard errors can then be used
for shrinkage estimation. The main functions are ldfast(), ldest(), mldest(),
sldest(), plot.lddf(), format_lddf(), and ldshrink(). Details of the methods
are available in Gerard (2021a) <doi:10.1111/1755-0998.13349>
and Gerard (2021b) <doi:10.1101/2021.02.08.430270>.
Author: David Gerard [aut, cre] (<https://orcid.org/0000-0001-9450-5023>)
Maintainer: David Gerard <gerard.1787@gmail.com>
Diff between ldsep versions 2.0.1 dated 2021-02-12 and 2.0.2 dated 2021-02-17
DESCRIPTION | 6 MD5 | 18 - NEWS.md | 6 R/RcppExports.R | 21 - R/fast.R | 45 --- build/partial.rdb |binary inst/doc/vcf.html | 2 src/RcppExports.cpp | 15 - src/postmom.cpp | 225 ------------------- tests/testthat/test-posteriormean.R | 412 +++++++++++++++--------------------- 10 files changed, 204 insertions(+), 546 deletions(-)
Title: Inverse Probability of Censoring Weights to Deal with Treatment
Switch in Randomized Clinical Trials
Description: Contains functions for formatting clinical trials data and implementing inverse probability of censoring weights to handle treatment switches when estimating causal treatment effect in randomized clinical trials.
Author: Nathalie Graffeo [aut, cre],
Aurelien Latouche [aut],
Sylvie Chevret [aut]
Maintainer: Nathalie Graffeo <nathalie.graffeo@univ-amu.fr>
Diff between ipcwswitch versions 1.0.3 dated 2019-05-15 and 1.0.4 dated 2021-02-17
DESCRIPTION | 8 ++++---- MD5 | 28 ++++++++++++++-------------- R/cens.ipw.R | 2 +- R/ipcw.R | 2 +- R/replicRows.R | 4 ++-- R/timesToKeep.R | 2 +- R/wideToLongTDC.R | 7 ++++--- inst/news.Rd | 8 +++++++- man/SHIdat.Rd | 2 +- man/cens.ipw.Rd | 16 +++++++++++++--- man/ipcw.Rd | 23 +++++++++++++++++------ man/replicRows.Rd | 18 +++++++++--------- man/timesTokeep.Rd | 2 +- man/toydata.Rd | 2 +- man/wideToLongTDC.Rd | 15 ++++++++++++--- 15 files changed, 88 insertions(+), 51 deletions(-)
Title: Efficient Sequential and Batch Estimation of Univariate and
Bivariate Probability Density Functions and Cumulative
Distribution Functions along with Quantiles (Univariate) and
Spearman's Correlation (Bivariate)
Description: Facilitates estimation of full univariate and bivariate
probability density functions and cumulative distribution functions along with
full quantile functions (univariate) and Spearman's rank correlation
(bivariate) using Hermite series based estimators. These estimators are
particularly useful in the sequential setting (both stationary and
non-stationary) and one-pass batch estimation setting for large data sets.
Based on: Stephanou, Michael, Varughese, Melvin and Macdonald, Iain. "Sequential quantiles via Hermite series density estimation." Electronic Journal of Statistics 11.1 (2017): 570-607 <doi:10.1214/17-EJS1245>,
Stephanou, Michael and Varughese, Melvin. "On the properties of Hermite series based distribution function estimators." Metrika (2020) <doi:10.1007/s00184-020-00785-z> and Stephanou, Michael and Varughese, Melvin. "Sequential Estimation of Nonparametric Correlation using Hermite Series Estimators." arXiv Preprint (2020) <arXiv:2012.06287>.
Author: Michael Stephanou [aut, cre],
Melvin Varughese [ctb]
Maintainer: Michael Stephanou <michael.stephanou@gmail.com>
Diff between hermiter versions 2.0.2 dated 2021-01-11 and 2.0.3 dated 2021-02-17
DESCRIPTION | 6 - MD5 | 10 +- NEWS.md | 6 + build/partial.rdb |binary tests/testthat/test_hermite_estimator.R | 118 ++++++++++++------------- tests/testthat/test_hermite_estimator_bivar.R | 119 +++++++++++++------------- 6 files changed, 136 insertions(+), 123 deletions(-)
More information about germinationmetrics at CRAN
Permanent link
Title: Analyze Group Patterns using Graph Theory in Educational
Settings
Description: Analyzes group patterns using discourse analysis data with graph theory mathematics. Takes the order of which individuals talk and converts it to a network edge and weight list. Returns the density, centrality, centralization, and subgroup information for each group. Based on the analytical framework laid out in Chai et al. (2019) <doi:10.1187/cbe.18-11-0222>.
Author: Albert Chai [aut],
Andrew Lee [aut],
Joshua Le [aut, cre],
Katherine Ly [ctb],
Kevin Banh [ctb],
Priya Pahal [ctb],
Stanley Lo [aut]
Maintainer: Joshua Le <jpl038@ucsd.edu>
Diff between discourseGT versions 1.1.3 dated 2021-01-18 and 1.1.4 dated 2021-02-17
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- R/plotNGTData.R | 19 ++++++++++++++++++- 3 files changed, 24 insertions(+), 7 deletions(-)
Title: Particle Metropolis Within Gibbs
Description: Provides an R implementation of the Particle Metropolis within
Gibbs sampler for model parameter, covariance matrix and random effect
estimation. A more general implementation of the sampler based on the paper
by Gunawan, D., Hawkins, G. E., Tran, M. N., Kohn, R., & Brown, S. D.
(2020) <doi:10.1016/j.jmp.2020.102368>. An HTML tutorial document describing
the package is available at <https://newcastlecl.github.io/samplerDoc/> and
includes several detailed examples, some background and troubleshooting
steps.
Author: Gavin Cooper [aut, cre, trl] (Package creator and maintainer),
Reilly Innes [aut],
Caroline Kuhne [aut],
Jon-Paul Cavallaro [aut],
David Gunawan [aut] (Author of original MATLAB code),
Guy Hawkins [aut],
Scott Brown [aut, trl] (Original translation from MATLAB to R)
Maintainer: Gavin Cooper <gavin@gavincooper.net>
Diff between pmwg versions 0.1.9 dated 2020-09-02 and 0.2.0 dated 2021-02-17
pmwg-0.1.9/pmwg/man/update_sampler.Rd |only pmwg-0.2.0/pmwg/DESCRIPTION | 10 pmwg-0.2.0/pmwg/MD5 | 54 ++- pmwg-0.2.0/pmwg/NAMESPACE | 2 pmwg-0.2.0/pmwg/R/data.R | 50 +++ pmwg-0.2.0/pmwg/R/efficient.R | 36 +- pmwg-0.2.0/pmwg/R/init.R | 12 pmwg-0.2.0/pmwg/R/messaging.R | 58 ++-- pmwg-0.2.0/pmwg/R/particle_sampler.R | 4 pmwg-0.2.0/pmwg/R/pmwg-package.R | 13 pmwg-0.2.0/pmwg/R/sampling.R | 405 ++++++++++++++++------------ pmwg-0.2.0/pmwg/R/store.R | 155 +++++++--- pmwg-0.2.0/pmwg/README.md | 12 pmwg-0.2.0/pmwg/build |only pmwg-0.2.0/pmwg/data/sampled_forstmann.rda |only pmwg-0.2.0/pmwg/man/accept_progress_bar.Rd | 5 pmwg-0.2.0/pmwg/man/accept_rate.Rd | 15 - pmwg-0.2.0/pmwg/man/as_mcmc.Rd | 10 pmwg-0.2.0/pmwg/man/check_run_stage_args.Rd | 41 +- pmwg-0.2.0/pmwg/man/extend_sampler.Rd |only pmwg-0.2.0/pmwg/man/gibbs_step.Rd | 5 pmwg-0.2.0/pmwg/man/gibbs_step_err.Rd | 5 pmwg-0.2.0/pmwg/man/init.Rd | 4 pmwg-0.2.0/pmwg/man/is.pmwgs.Rd | 5 pmwg-0.2.0/pmwg/man/pmwg-package.Rd | 13 pmwg-0.2.0/pmwg/man/relabel_samples.Rd |only pmwg-0.2.0/pmwg/man/run_stage.Rd | 55 ++- pmwg-0.2.0/pmwg/man/sampled_forstmann.Rd |only pmwg-0.2.0/pmwg/man/set_epsilon.Rd |only pmwg-0.2.0/pmwg/man/set_mix.Rd |only pmwg-0.2.0/pmwg/man/set_proposal.Rd |only pmwg-0.2.0/pmwg/man/test_sampler_adapted.Rd | 8 pmwg-0.2.0/pmwg/man/trim_na.Rd |only 33 files changed, 616 insertions(+), 361 deletions(-)