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Title: Accessibility Toolbox for 'R' Users
Description: Provides a toolbox that allows the user to implement accessibility related concepts.
Author: Mohamed El Fodil Ihaddaden [aut, cre]
Maintainer: Mohamed El Fodil Ihaddaden <ihaddaden.fodeil@gmail.com>
Diff between savonliquide versions 0.1.0 dated 2020-12-07 and 0.2.0 dated 2021-02-22
DESCRIPTION | 14 - MD5 | 23 +- NEWS.md | 2 R/add_description.R |only R/create_invisible_anchor.R |only R/make_skiplinks.R |only R/make_tabbable.R |only README.md | 323 +++++++++++++++++++++++++++++-- inst |only man/add_description.Rd |only man/create_invisible_anchor.Rd |only man/describe_using.Rd |only man/figures/README-unnamed-chunk-4-1.png |only man/figures/README-unnamed-chunk-7-1.png |only man/make_skiplinks.Rd |only man/make_tabable.Rd |only tests/testthat/test-check_contrast.R | 5 tests/testthat/test-make_tabbable.R |only tests/testthat/test-to_skiplinks.R |only 19 files changed, 336 insertions(+), 31 deletions(-)
Title: Easily Apply Formats to Data
Description: Contains a set of functions that can be used to apply
formats to data frames or vectors. The package aims to provide to
functionality similar to that of SAS® formats. Formats are assigned to
the format attribute on data frame columns. Then when the fdata()
function is called, a new data frame is created with the column data
formatted as specified. The package also contains a value() function
to create a user-defined format, similar to a SAS® user-defined format.
Author: David Bosak
Maintainer: David Bosak <dbosak01@gmail.com>
Diff between fmtr versions 1.4.1 dated 2021-01-06 and 1.5.0 dated 2021-02-22
DESCRIPTION | 6 MD5 | 35 +- NAMESPACE | 2 NEWS.md | 5 R/formats.R | 4 R/labels.R |only R/widths.R | 2 build/vignette.rds |binary inst/doc/fmtr-convenience.Rmd | 4 inst/doc/fmtr-convenience.html | 205 --------------- inst/doc/fmtr-fapply.html | 406 ++++++++---------------------- inst/doc/fmtr-fcat.html | 262 ++----------------- inst/doc/fmtr-fdata.html | 250 ++---------------- inst/doc/fmtr-helpers.html | 203 --------------- inst/doc/fmtr.html | 542 +++++++++++++---------------------------- man/formats.Rd | 4 man/labels.data.frame.Rd |only man/widths.Rd | 2 tests/testthat/test-labels.R |only vignettes/fmtr-convenience.Rmd | 4 20 files changed, 402 insertions(+), 1534 deletions(-)
Title: Flexible Parametric Survival and Multi-State Models
Description: Flexible parametric models for time-to-event data,
including the Royston-Parmar spline model, generalized gamma and
generalized F distributions. Any user-defined parametric
distribution can be fitted, given at least an R function defining
the probability density or hazard. There are also tools for
fitting and predicting from fully parametric multi-state models,
based on either cause-specific hazards or mixture models.
Author: Christopher Jackson [aut, cre],
Paul Metcalfe [ctb],
Jordan Amdahl [ctb],
Matthew T. Warkentin [ctb],
Kevin Kunzmann [ctb]
Maintainer: Christopher Jackson <chris.jackson@mrc-bsu.cam.ac.uk>
Diff between flexsurv versions 1.1.1 dated 2019-03-18 and 2.0 dated 2021-02-22
flexsurv-1.1.1/flexsurv/data/bc.txt.gz |only flexsurv-1.1.1/flexsurv/tests/testthat/test_deriv.R |only flexsurv-2.0/flexsurv/DESCRIPTION | 30 flexsurv-2.0/flexsurv/MD5 | 171 ++-- flexsurv-2.0/flexsurv/NAMESPACE | 118 ++ flexsurv-2.0/flexsurv/R/GenGamma.R | 2 flexsurv-2.0/flexsurv/R/Llogis.R | 2 flexsurv-2.0/flexsurv/R/ajfit.R |only flexsurv-2.0/flexsurv/R/broom-funs.R |only flexsurv-2.0/flexsurv/R/deriv.R | 8 flexsurv-2.0/flexsurv/R/flexsurv-package.R | 5 flexsurv-2.0/flexsurv/R/flexsurvmix.R |only flexsurv-2.0/flexsurv/R/flexsurvmix_louis.R |only flexsurv-2.0/flexsurv/R/flexsurvreg.R | 664 +++++++++------- flexsurv-2.0/flexsurv/R/flexsurvrtrunc.R |only flexsurv-2.0/flexsurv/R/fmixmsm.R |only flexsurv-2.0/flexsurv/R/mstate.R | 657 +++++++++++++-- flexsurv-2.0/flexsurv/R/plot.flexsurvreg.R | 10 flexsurv-2.0/flexsurv/R/predict.flexsurvreg.R |only flexsurv-2.0/flexsurv/R/residuals.flexsurvreg.R |only flexsurv-2.0/flexsurv/R/spline.R | 66 + flexsurv-2.0/flexsurv/R/summary.flexsurvmix.R |only flexsurv-2.0/flexsurv/R/summary.flexsurvreg.R | 17 flexsurv-2.0/flexsurv/R/summary.flexsurvrtrunc.R |only flexsurv-2.0/flexsurv/R/survrtrunc.R |only flexsurv-2.0/flexsurv/R/survsplinek.R |only flexsurv-2.0/flexsurv/R/utils.R | 141 ++- flexsurv-2.0/flexsurv/build/vignette.rds |binary flexsurv-2.0/flexsurv/data/bc.txt |only flexsurv-2.0/flexsurv/inst/NEWS | 93 ++ flexsurv-2.0/flexsurv/inst/doc/distributions.Rnw |only flexsurv-2.0/flexsurv/inst/doc/distributions.pdf |only flexsurv-2.0/flexsurv/inst/doc/flexsurv-examples.R | 27 flexsurv-2.0/flexsurv/inst/doc/flexsurv-examples.pdf |binary flexsurv-2.0/flexsurv/inst/doc/flexsurv.R | 70 - flexsurv-2.0/flexsurv/inst/doc/flexsurv.pdf |binary flexsurv-2.0/flexsurv/inst/doc/multistate.R |only flexsurv-2.0/flexsurv/inst/doc/multistate.Rnw |only flexsurv-2.0/flexsurv/inst/doc/multistate.pdf |only flexsurv-2.0/flexsurv/man/GenF.Rd | 6 flexsurv-2.0/flexsurv/man/GenF.orig.Rd | 12 flexsurv-2.0/flexsurv/man/GenGamma.Rd | 8 flexsurv-2.0/flexsurv/man/GenGamma.orig.Rd | 6 flexsurv-2.0/flexsurv/man/Gompertz.Rd | 6 flexsurv-2.0/flexsurv/man/Llogis.Rd | 2 flexsurv-2.0/flexsurv/man/Survspline.Rd | 114 ++ flexsurv-2.0/flexsurv/man/Survsplinek.Rd |only flexsurv-2.0/flexsurv/man/ajfit.Rd |only flexsurv-2.0/flexsurv/man/ajfit_flexsurvmix.Rd |only flexsurv-2.0/flexsurv/man/ajfit_fmsm.Rd |only flexsurv-2.0/flexsurv/man/augment.flexsurvreg.Rd |only flexsurv-2.0/flexsurv/man/bc.Rd | 6 flexsurv-2.0/flexsurv/man/bootci.fmsm.Rd |only flexsurv-2.0/flexsurv/man/bos.Rd | 6 flexsurv-2.0/flexsurv/man/dot-hess_to_cov.Rd |only flexsurv-2.0/flexsurv/man/dot-hessian.Rd |only flexsurv-2.0/flexsurv/man/flexsurvmix.Rd |only flexsurv-2.0/flexsurv/man/flexsurvreg.Rd | 454 ++++++---- flexsurv-2.0/flexsurv/man/flexsurvrtrunc.Rd |only flexsurv-2.0/flexsurv/man/flexsurvspline.Rd | 25 flexsurv-2.0/flexsurv/man/fmixmsm.Rd |only flexsurv-2.0/flexsurv/man/fmsm.Rd |only flexsurv-2.0/flexsurv/man/get_basepars.Rd |only flexsurv-2.0/flexsurv/man/glance.flexsurvreg.Rd |only flexsurv-2.0/flexsurv/man/hazard.Rd | 8 flexsurv-2.0/flexsurv/man/lines.flexsurvreg.Rd | 22 flexsurv-2.0/flexsurv/man/mean_flexsurvmix.Rd |only flexsurv-2.0/flexsurv/man/meanfinal_fmixmsm.Rd |only flexsurv-2.0/flexsurv/man/means.Rd | 18 flexsurv-2.0/flexsurv/man/model.frame.flexsurvreg.Rd | 1 flexsurv-2.0/flexsurv/man/msfit.flexsurvreg.Rd | 13 flexsurv-2.0/flexsurv/man/nobs.flexsurvreg.Rd |only flexsurv-2.0/flexsurv/man/normboot.flexsurvreg.Rd | 10 flexsurv-2.0/flexsurv/man/p_flexsurvmix.Rd |only flexsurv-2.0/flexsurv/man/pars.fmsm.Rd | 11 flexsurv-2.0/flexsurv/man/pfinal_fmsm.Rd |only flexsurv-2.0/flexsurv/man/plot.flexsurvreg.Rd | 34 flexsurv-2.0/flexsurv/man/plot_survtrunc.Rd |only flexsurv-2.0/flexsurv/man/pmatrix.fs.Rd | 28 flexsurv-2.0/flexsurv/man/pmatrix.simfs.Rd | 22 flexsurv-2.0/flexsurv/man/ppath_fmixmsm.Rd |only flexsurv-2.0/flexsurv/man/predict.flexsurvreg.Rd |only flexsurv-2.0/flexsurv/man/probs_flexsurvmix.Rd |only flexsurv-2.0/flexsurv/man/qfinal_fmixmsm.Rd |only flexsurv-2.0/flexsurv/man/qgeneric.Rd | 6 flexsurv-2.0/flexsurv/man/quantile_flexsurvmix.Rd |only flexsurv-2.0/flexsurv/man/reexports.Rd |only flexsurv-2.0/flexsurv/man/residuals.flexsurvreg.Rd |only flexsurv-2.0/flexsurv/man/rmst_flexsurvmix.Rd |only flexsurv-2.0/flexsurv/man/sim.fmsm.Rd | 23 flexsurv-2.0/flexsurv/man/simfinal_fmsm.Rd |only flexsurv-2.0/flexsurv/man/simfs_bytrans.Rd |only flexsurv-2.0/flexsurv/man/simt_flexsurvmix.Rd |only flexsurv-2.0/flexsurv/man/summary.flexsurvreg.Rd | 22 flexsurv-2.0/flexsurv/man/summary.flexsurvrtrunc.Rd |only flexsurv-2.0/flexsurv/man/survrtrunc.Rd |only flexsurv-2.0/flexsurv/man/tidy.flexsurvreg.Rd |only flexsurv-2.0/flexsurv/man/totlos.fs.Rd | 17 flexsurv-2.0/flexsurv/man/totlos.simfs.Rd | 23 flexsurv-2.0/flexsurv/src/genf.cpp | 9 flexsurv-2.0/flexsurv/tests/testthat/test_custom.R | 48 - flexsurv-2.0/flexsurv/tests/testthat/test_flexsurvmix.R |only flexsurv-2.0/flexsurv/tests/testthat/test_flexsurvreg.R | 108 -- flexsurv-2.0/flexsurv/tests/testthat/test_fmsm.R |only flexsurv-2.0/flexsurv/tests/testthat/test_genf.R | 33 flexsurv-2.0/flexsurv/tests/testthat/test_llogis.R | 6 flexsurv-2.0/flexsurv/tests/testthat/test_mstate.R | 59 + flexsurv-2.0/flexsurv/tests/testthat/test_outputs.R | 12 flexsurv-2.0/flexsurv/tests/testthat/test_rtrunc.R |only flexsurv-2.0/flexsurv/tests/testthat/test_spline.R | 71 - flexsurv-2.0/flexsurv/tests/testthat/test_splinedist.R | 74 + flexsurv-2.0/flexsurv/vignettes/distributions.Rnw |only flexsurv-2.0/flexsurv/vignettes/flexsurv-examples.Rnw | 51 + flexsurv-2.0/flexsurv/vignettes/flexsurv.Rnw | 484 ----------- flexsurv-2.0/flexsurv/vignettes/flexsurv.bib | 69 + flexsurv-2.0/flexsurv/vignettes/multistate.Rnw |only 116 files changed, 2499 insertions(+), 1509 deletions(-)
More information about clusTransition at CRAN
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Title: A Companion to the Multi-CAST Collection
Description: Provides a basic interface for accessing annotation data from
the Multi-CAST collection, a database of spoken natural language texts
edited by Geoffrey Haig and Stefan Schnell. The collection draws from a
diverse set of languages and has been annotated across multiple levels.
Annotation data is downloaded on request from the servers of the
University of Bamberg. See the Multi-CAST website
<https://multicast.aspra.uni-bamberg.de/> for more information and a list
of related publications.
Author: Nils Norman Schiborr [aut, cre]
Maintainer: Nils Norman Schiborr <nils-norman.schiborr@uni-bamberg.de>
Diff between multicastR versions 1.3.0 dated 2019-08-30 and 2.0.0 dated 2021-02-22
multicastR-1.3.0/multicastR/R/mc_eaf_to_tex.R |only multicastR-1.3.0/multicastR/R/mc_eaf_to_tsv.R |only multicastR-1.3.0/multicastR/R/mc_eaf_to_xml.R |only multicastR-1.3.0/multicastR/R/mc_miscellanea.R |only multicastR-1.3.0/multicastR/R/mc_packages.R |only multicastR-1.3.0/multicastR/R/mc_read_eaf.R |only multicastR-1.3.0/multicastR/R/mc_reflist.R |only multicastR-1.3.0/multicastR/R/mc_subfunc.R |only multicastR-1.3.0/multicastR/R/mc_table.R |only multicastR-1.3.0/multicastR/R/mc_utilities.R |only multicastR-1.3.0/multicastR/man/mc_build_xml.Rd |only multicastR-1.3.0/multicastR/man/mc_eaf_to_tex.Rd |only multicastR-1.3.0/multicastR/man/mc_eaf_to_tsv.Rd |only multicastR-1.3.0/multicastR/man/mc_eaf_to_xml.Rd |only multicastR-1.3.0/multicastR/man/mc_meta_eaf.Rd |only multicastR-1.3.0/multicastR/man/mc_missarg.Rd |only multicastR-1.3.0/multicastR/man/mc_prep_table.Rd |only multicastR-1.3.0/multicastR/man/mc_prep_tsv.Rd |only multicastR-1.3.0/multicastR/man/mc_prep_xml.Rd |only multicastR-1.3.0/multicastR/man/mc_read_eaf.Rd |only multicastR-1.3.0/multicastR/man/mc_reflist.Rd |only multicastR-1.3.0/multicastR/man/mc_subfunc.Rd |only multicastR-1.3.0/multicastR/man/mc_table.Rd |only multicastR-1.3.0/multicastR/man/mc_write_refs_tex.Rd |only multicastR-1.3.0/multicastR/man/mc_write_refs_tsv.Rd |only multicastR-1.3.0/multicastR/man/mc_write_table.Rd |only multicastR-1.3.0/multicastR/man/mc_write_tex.Rd |only multicastR-1.3.0/multicastR/man/mc_write_tsv.Rd |only multicastR-1.3.0/multicastR/man/mc_write_xml.Rd |only multicastR-1.3.0/multicastR/tests |only multicastR-2.0.0/multicastR/DESCRIPTION | 15 - multicastR-2.0.0/multicastR/MD5 | 61 +--- multicastR-2.0.0/multicastR/NAMESPACE | 6 multicastR-2.0.0/multicastR/NEWS.md | 14 + multicastR-2.0.0/multicastR/R/mc_clauses.R |only multicastR-2.0.0/multicastR/R/mc_index.R |only multicastR-2.0.0/multicastR/R/mc_metadata.R | 146 ++++------- multicastR-2.0.0/multicastR/R/mc_referents.R | 170 +++++------- multicastR-2.0.0/multicastR/R/multicast.R | 251 ++++++------------- multicastR-2.0.0/multicastR/R/multicastR.R | 41 +-- multicastR-2.0.0/multicastR/R/zzz.R |only multicastR-2.0.0/multicastR/man/mc_clauses.Rd | 95 +++---- multicastR-2.0.0/multicastR/man/mc_index.Rd | 67 ++--- multicastR-2.0.0/multicastR/man/mc_metadata.Rd | 106 +++----- multicastR-2.0.0/multicastR/man/mc_referents.Rd | 125 ++++----- multicastR-2.0.0/multicastR/man/multicast.Rd | 178 ++++++------- multicastR-2.0.0/multicastR/man/multicastR.Rd | 77 ++--- 47 files changed, 587 insertions(+), 765 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-02-22 0.1.0
Title: Datasets to Align Financial Markets with Climate Goals
Description: These datasets support the implementation in R of
the software 'PACTA' (Paris Agreement Capital Transition Assessment),
which is a free tool that calculates the alignment between financial
assets and climate scenarios (<https://2degrees-investing.org/>).
Financial institutions use 'PACTA' to study how their capital
allocation impacts the climate. Because both financial institutions
and market data providers keep their data private, this package
provides fake, public data to enable the development and use of
'PACTA' in R.
Author: Mauro Lepore [aut, cre, ctr] (<https://orcid.org/0000-0002-1986-7988>),
Jackson Hoffart [aut, dtc] (<https://orcid.org/0000-0002-8600-5042>),
Klaus Hagedorn [aut],
2 Degrees Investing Initiative [cph, fnd]
Maintainer: Mauro Lepore <maurolepore@gmail.com>
Diff between r2dii.data versions 0.1.7 dated 2021-02-08 and 0.1.8 dated 2021-02-22
DESCRIPTION | 6 +-- MD5 | 32 ++++++++-------- NEWS.md | 10 ++++- README.md | 48 ++++++++++++++++++++---- data/ald_demo.rda |binary data/data_dictionary.rda |binary data/nace_classification.rda |binary data/psic_classification.rda |binary data/sector_classifications.rda |binary man/ald_demo.Rd | 3 + man/data_dictionary.Rd | 2 - tests/testthat/_snaps/ald_demo.md | 15 +++++-- tests/testthat/_snaps/data_dictionary.md | 10 ++--- tests/testthat/_snaps/sector_classifications.md | 4 +- tests/testthat/test-ald_demo.R | 10 +++++ tests/testthat/test-all.R | 11 +++++ tests/testthat/test-sector_classifications.R | 18 +++++++++ 17 files changed, 127 insertions(+), 42 deletions(-)
Title: Cross-Platform Perl Based R Function to Create Excel 2003 (XLS)
and Excel 2007 (XLSX) Files
Description: Cross-platform Perl based R function to create Excel 2003 (XLS) and Excel 2007 (XLSX)
files from one or more data frames. Each data frame will be
written to a separate named worksheet in the Excel spreadsheet.
The worksheet name will be the name of the data frame it contains
or can be specified by the user.
Author: Marc Schwartz <marc_schwartz@me.com> and various authors for Perl modules listed in each .pm file.
Maintainer: Marc Schwartz <marc_schwartz@me.com>
Diff between WriteXLS versions 6.1.0 dated 2020-11-23 and 6.2.0 dated 2021-02-22
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/testPerl.R | 9 ++++++--- inst/Perl/WriteXLS.pl | 11 ++++++----- inst/Perl/WriteXLSX.pl | 11 ++++++----- 5 files changed, 26 insertions(+), 21 deletions(-)
Title: Interactive Plotting of Three-Way Differential Expression
Analysis
Description: Differential expression (DE) analysis can be used to discover quantitative changes in expression levels between experimental groups. Such results are typically visualised using volcano plots, however in cases where more than two experimental groups are involved, visualising results can become convoluted and it quickly becomes difficult to see the wood for the trees. This package provides easy-to-use functions to extract and visualise outputs from DE between three groups (primarily aimed at 'limma' and 'DESeq2' outputs). We present novel methods to map DE results into polar coordinates to enable users to combine and simultaneously view three sets of results. These graphics also possess optional 'plotly' outputs for interactive and three-dimensional functionality, as seen in Lewis et. al. (2019) <doi:10.1016/j.celrep.2019.07.091>.
Author: Katriona Goldmann [aut, cre],
Myles Lewis [aut, ctb]
Maintainer: Katriona Goldmann <k.goldmann@qmul.ac.uk>
Diff between volcano3D versions 1.0.1 dated 2020-06-26 and 1.1.0 dated 2021-02-22
DESCRIPTION | 8 MD5 | 43 - NAMESPACE | 2 NEWS.md | 18 R/boxplot_trio.R | 9 R/polar_coords.R | 63 - R/radial_plotly.R | 31 R/significance_subset.R |only R/volcano3D.R | 51 - R/volcano_trio.R | 420 +++++++--- build/vignette.rds |binary inst/WORDLIST | 7 inst/doc/Vignette.R | 13 inst/doc/Vignette.html | 1890 ++++++++++++++++++++++++++++----------------- inst/doc/Vignette.rmd | 21 inst/pkgdown |only man/polar-class.Rd | 2 man/polar_coords.Rd | 11 man/radial_plotly.Rd | 18 man/significance_subset.Rd |only man/volcano3D.Rd | 22 man/volcano_plot.Rd | 74 + man/volcano_trio.Rd | 69 + vignettes/Vignette.rmd | 21 24 files changed, 1871 insertions(+), 922 deletions(-)
Title: Bayesian Network Learning with the PCHC and Related Algorithms
Description: Bayesian network learning using the PCHC algorithm. PCHC stands for PC Hill-Climbing.
It is a new hybrid algorithm that used PC to construct the skeleton of the BN and then
utilizes the Hill-Climbing greedy search. The relevant papers are a) Tsagris M. (2021).
"A new scalable Bayesian network learning algorithm with applications to economics".
Computational Economics (To appear). <doi:10.1007/s10614-020-10065-7>.
b) Tsagris M. (2020). The FEDHC Bayesian network learning algorithm. <arXiv:2012.00113>.
Author: Michail Tsagris [aut, cre]
Maintainer: Michail Tsagris <mtsagris@uoc.gr>
Diff between pchc versions 0.3 dated 2020-11-30 and 0.4 dated 2021-02-22
DESCRIPTION | 15 ++++++++++----- MD5 | 20 ++++++++++---------- R/pcor.R | 10 ++++++---- man/fedhc.Rd | 4 +++- man/fedhc.skel.Rd | 6 ++++-- man/mmhc.Rd | 2 +- man/mmhc.skel.Rd | 4 ++-- man/pchc-package.Rd | 8 +++++--- man/pchc.skel.Rd | 2 +- man/pchc.skel.boot.Rd | 2 +- man/rbn.Rd | 2 +- 11 files changed, 44 insertions(+), 31 deletions(-)
Title: A 'ggplot2' Extension Inspired by 'GraphPad Prism'
Description: Provides various themes, palettes, and other functions
that are used to customise ggplots to look like they were made in 'GraphPad
Prism'. The 'Prism'-look is achieved with theme_prism() and
scale_fill|colour_prism(), axes can be changed with custom guides like
guide_prism_minor(), and significance indicators added with add_pvalue().
Author: Charlotte Dawson [aut, cre] (<https://orcid.org/0000-0002-7151-5971>)
Maintainer: Charlotte Dawson <csdaw@outlook.com>
Diff between ggprism versions 1.0.1 dated 2021-02-12 and 1.0.2 dated 2021-02-22
DESCRIPTION | 6 - MD5 | 56 +++++++-------- NEWS.md | 8 ++ R/add_pvalue.R | 17 ++-- R/geom_bracket.R | 10 -- R/utils.R | 13 --- README.md | 26 ++++--- build/partial.rdb |binary inst/doc/axes.html | 27 ++++--- inst/doc/colours.html | 13 ++- inst/doc/ggprism.html | 11 ++ inst/doc/pvalues.R | 7 + inst/doc/pvalues.Rmd | 7 + inst/doc/pvalues.html | 96 ++++++++++++++------------ inst/doc/themes.html | 11 ++ inst/examples/ex-add_pvalue.R | 10 +- inst/tinytest/test-add_pvalue.R | 43 ++++++++++- inst/tinytest/test-annotation_ticks.R | 16 +++- inst/tinytest/test-guide_prism_minor.R | 6 - inst/tinytest/test-guide_prism_offset_minor.R | 6 - inst/tinytest/test-utils.R | 56 +++++++++++++++ man/add_pvalue.Rd | 10 +- man/figures/README-ex-1.png |binary man/figures/README-ex-2.png |binary man/figures/README-ex2-1.png |binary man/figures/README-ex2-2.png |binary man/figures/README-ex3-1.png |binary man/figures/README-ex3-2.png |binary vignettes/pvalues.Rmd | 7 + 29 files changed, 298 insertions(+), 164 deletions(-)
Title: Compositional Data Analysis
Description: Regression, classification, contour plots, hypothesis testing and fitting of distributions for compositional data
are some of the functions included. The standard textbook for such data is John Aitchison's (1986) "The statistical
analysis of compositional data". Relevant papers include a) Tsagris M.T., Preston S. and Wood A.T.A. (2011).
A data-based power transformation for compositional data. Fourth International International Workshop on Compositional
Data Analysis. b) Tsagris M. (2014). The k-NN algorithm for compositional data: a revised approach with and without zero
values present. Journal of Data Science, 12(3):519--534. c) Tsagris M. (2015). A novel, divergence based, regression for
compositional data. Proceedings of the 28th Panhellenic Statistics Conference, 15-18 April 2015, Athens, Greece, 430--444.
d) Tsagris M. (2015). Regression analysis with compositional data containing zero values. Chilean Journal of Statistics,
6(2):47--57. e) Tsagris M., Preston S. and Wood A.T.A. (2016). Improved supervised classification for compositional data
using the alpha-transformation. Journal of Classification, 33(2):243--261. <doi:10.1007/s00357-016-9207-5>.
f) Tsagris M., Preston S. and Wood A.T.A. (2017). Nonparametric hypothesis testing for equality of means on the simplex.
Journal of Statistical Computation and Simulation, 87(2): 406--422. <doi:10.1080/00949655.2016.1216554>. g) Tsagris M.
and Stewart C. (2018). A Dirichlet regression model for compositional data with zeros. Lobachevskii Journal of Mathematics,
39(3): 398--412. <doi:10.1134/S1995080218030198>. h) Alenazi A. (2019). Regression for compositional data with compositional
data as predictor variables with or without zero values. Journal of Data Science, 17(1): 219--238.
<doi:10.6339/JDS.201901_17(1).0010>. i) Tsagris M. and Stewart C. (2020). A folded model for compositional data analysis.
Australian and New Zealand Journal of Statistics, 62(2):249--277. <doi:10.1111/anzs.12289>. j) Tsagris M., Alenazi A.
and Stewart C. (2020). The alpha-k-NN regression for compositional data. <arXiv:2002.05137>. We further include functions
for percentages (or proportions).
Author: Michail Tsagris [aut, cre],
Giorgos Athineou [aut],
Abdulaziz Alenazi [ctb]
Maintainer: Michail Tsagris <mtsagris@uoc.gr>
Diff between Compositional versions 4.3 dated 2021-01-19 and 4.4 dated 2021-02-22
Compositional-4.3/Compositional/R/diri.density.R |only Compositional-4.3/Compositional/man/diri.density.Rd |only Compositional-4.4/Compositional/DESCRIPTION | 28 +++- Compositional-4.4/Compositional/MD5 | 76 ++++++----- Compositional-4.4/Compositional/NAMESPACE | 6 Compositional-4.4/Compositional/R/alfa.nb.R |only Compositional-4.4/Compositional/R/alfa.pca.R |only Compositional-4.4/Compositional/R/alfafda.tune.R | 2 Compositional-4.4/Compositional/R/alfaknn.tune.R | 2 Compositional-4.4/Compositional/R/alfanb.tune.R |only Compositional-4.4/Compositional/R/alfarda.tune.R | 2 Compositional-4.4/Compositional/R/bc.R |only Compositional-4.4/Compositional/R/comp.den.R | 2 Compositional-4.4/Compositional/R/comp.nb.R |only Compositional-4.4/Compositional/R/comp.reg.R | 2 Compositional-4.4/Compositional/R/cv.compnb.R |only Compositional-4.4/Compositional/R/fp.R |only Compositional-4.4/Compositional/R/lc.reg.R |only Compositional-4.4/Compositional/R/logpca.R |only Compositional-4.4/Compositional/R/mixreg.R | 4 Compositional-4.4/Compositional/R/pcc.R |only Compositional-4.4/Compositional/R/zadr.R | 19 +- Compositional-4.4/Compositional/man/Compositional-package.Rd | 4 Compositional-4.4/Compositional/man/a.est.Rd | 2 Compositional-4.4/Compositional/man/acor.tune.Rd | 2 Compositional-4.4/Compositional/man/alfa.Rd | 4 Compositional-4.4/Compositional/man/alfa.nb.Rd |only Compositional-4.4/Compositional/man/alfa.pca.Rd |only Compositional-4.4/Compositional/man/alfa.rda.Rd | 6 Compositional-4.4/Compositional/man/alfanb.tune.Rd |only Compositional-4.4/Compositional/man/alfann.Rd | 6 Compositional-4.4/Compositional/man/alfapcr.tune.Rd | 2 Compositional-4.4/Compositional/man/alr.Rd | 4 Compositional-4.4/Compositional/man/alr.all.Rd | 4 Compositional-4.4/Compositional/man/bc.Rd |only Compositional-4.4/Compositional/man/comp.den.Rd | 2 Compositional-4.4/Compositional/man/comp.knn.Rd | 2 Compositional-4.4/Compositional/man/comp.nb.Rd |only Compositional-4.4/Compositional/man/cv.compnb.Rd |only Compositional-4.4/Compositional/man/diri.contour.Rd | 6 Compositional-4.4/Compositional/man/fd.contour.Rd | 6 Compositional-4.4/Compositional/man/fold.contour.Rd | 6 Compositional-4.4/Compositional/man/fp.Rd |only Compositional-4.4/Compositional/man/glm.pcr.Rd | 2 Compositional-4.4/Compositional/man/kent.contour.Rd | 6 Compositional-4.4/Compositional/man/lc.reg.Rd |only Compositional-4.4/Compositional/man/logpca.Rd |only Compositional-4.4/Compositional/man/mix.compnorm.Rd | 2 Compositional-4.4/Compositional/man/mixnorm.contour.Rd | 6 Compositional-4.4/Compositional/man/pcc.Rd |only 50 files changed, 134 insertions(+), 81 deletions(-)
Title: Identify Changes in Mean
Description: A basic implementation of the change in mean detection method outlined in: Taylor, Wayne A. (2000) <https://variation.com/wp-content/uploads/change-point-analyzer/change-point-analysis-a-powerful-new-tool-for-detecting-changes.pdf>. The package recursively uses the mean-squared error change point calculation to identify candidate change points. The candidate change points are then re-estimated and Taylor's backwards elimination process is then employed to come up with a final set of change points. Many of the underlying functions are written in C++ for improved performance.
Author: Michael Marks [aut, cre]
Maintainer: Michael Marks <michaelmarks@analyticaconsulting.com>
Diff between ChangePointTaylor versions 0.1.0 dated 2020-06-09 and 0.1.1 dated 2021-02-22
DESCRIPTION | 12 MD5 | 14 NEWS.md | 14 R/RcppExports.R | 38 - R/change_point_analyzer_function.R | 2 build/vignette.rds |binary inst/doc/ChangePointTaylor-vignette.R | 112 ++--- inst/doc/ChangePointTaylor-vignette.html | 663 +++++++++++-------------------- 8 files changed, 348 insertions(+), 507 deletions(-)
More information about ChangePointTaylor at CRAN
Permanent link
Title: Stable and Interpretable RUle Set
Description: A regression and classification algorithm based on random forests, which takes the form of a short list of rules. SIRUS combines the simplicity of decision trees with a predictivity close to random forests. The core aggregation principle of random forests is kept, but instead of aggregating predictions, SIRUS aggregates the forest structure: the most frequent nodes of the forest are selected to form a stable rule ensemble model. The algorithm is fully described in the following articles: Benard C., Biau G., da Veiga S., Scornet E. (2021), Electron. J. Statist., 15:427-505 <DOI:10.1214/20-EJS1792> for classification, and Benard C., Biau G., da Veiga S., Scornet E. (2020) <arXiv:2004.14841> for regression. This R package is a fork from the project ranger (<https://github.com/imbs-hl/ranger>).
Author: Clement Benard [aut, cre], Marvin N. Wright [ctb, cph]
Maintainer: Clement Benard <clement.benard5@gmail.com>
Diff between sirus versions 0.3.1 dated 2020-12-08 and 0.3.2 dated 2021-02-22
DESCRIPTION | 10 +++++----- MD5 | 12 +++++++----- R/sirus.R | 36 +++++++++++++++++++----------------- README.md | 18 ++++++++++++------ build |only man/figures |only man/sirus.cv.Rd | 6 +++--- man/sirus.fit.Rd | 6 +++--- 8 files changed, 49 insertions(+), 39 deletions(-)
Title: Connect to 'AWS Athena' using 'Boto3' ('DBI' Interface)
Description: Designed to be compatible with the R package 'DBI' (Database Interface)
when connecting to Amazon Web Service ('AWS') Athena <https://aws.amazon.com/athena/>.
To do this 'Python' 'Boto3' Software Development Kit ('SDK')
<https://boto3.amazonaws.com/v1/documentation/api/latest/index.html> is used as a driver.
Author: Dyfan Jones [aut, cre]
Maintainer: Dyfan Jones <dyfan.r.jones@gmail.com>
Diff between RAthena versions 1.12.0 dated 2021-01-20 and 2.0.0 dated 2021-02-22
DESCRIPTION | 10 MD5 | 65 ++-- NEWS.md | 121 +++++++ R/Connection.R | 245 +++++++--------- R/DataTypes.R | 30 + R/Driver.R | 18 + R/File_Parser.R | 61 +++- R/Options.R | 40 ++ R/Result.R | 238 +++++++++------ R/View.R | 38 +- R/athena_low_api.R | 34 -- R/column_parser.R |only R/dplyr_integration.R | 20 - R/install.R | 2 R/table.R | 91 ++---- R/util.R | 198 +++++++++---- inst/doc/aws_athena_query_caching.html | 343 +++++----------------- inst/doc/aws_s3_backend.html | 231 +-------------- inst/doc/changing_backend_file_parser.html | 273 +++--------------- inst/doc/convert_and_save_cost.html | 337 +++++----------------- inst/doc/getting_started.html | 439 ++++++++--------------------- inst/doc/how_to_retry.html | 257 ++-------------- man/RAthena_options.Rd | 13 man/backend_dbplyr.Rd | 4 man/dbConnect-AthenaDriver-method.Rd | 14 tests/testthat/helper.R | 5 tests/testthat/test-classes.R | 2 tests/testthat/test-datatransfer-vroom.R | 9 tests/testthat/test-dbDisconnect.R | 1 tests/testthat/test-dplyr-sql-trans-env.R | 37 +- tests/testthat/test-exist-remove.R | 3 tests/testthat/test-file-parser.R |only tests/testthat/test-metadata.R | 35 +- tests/testthat/test-retry.R | 4 tests/testthat/test-view.R |only 35 files changed, 1298 insertions(+), 1920 deletions(-)
Title: Argentina Political Analysis
Description: Toolbox for the Analysis of Political and Electoral Data from Argentina.
Author: Juan Pablo Ruiz Nicolini [aut, cre, cph]
(<https://orcid.org/0000-0002-3138-6343>),
Camila Higa [ctb],
Iván Lewin [ctb],
Lucas Enrich [ctb]
Maintainer: Juan Pablo Ruiz Nicolini <juanpabloruiznicolini@gmail.com>
Diff between polAr versions 0.2.0 dated 2020-09-14 and 0.2.0.1 dated 2021-02-22
DESCRIPTION | 19 - MD5 | 64 +++--- R/get_bill_votes.R | 21 +- R/get_election_data.R | 34 ++- R/get_geo.R | 55 +++++ R/get_grid.R | 7 R/get_multiple_elections.R | 5 R/get_names.R | 39 ++-- R/get_speech.R | 43 +++- R/plot_bill.R | 2 R/plot_results.R | 12 - R/polar_global_variables.R | 7 R/secciones_pba.R |only R/show_arg_codes.R | 1 R/show_available_bills.R | 20 +- R/show_available_speech.R | 13 + README.md | 26 +- build/vignette.rds |binary data/secciones_pba.rda |only inst/doc/compute.Rmd | 2 inst/doc/compute.html | 385 ++++++++++------------------------------ inst/doc/data.Rmd | 2 inst/doc/data.html | 423 ++++++++++++-------------------------------- inst/doc/results.Rmd | 2 inst/doc/results.html | 365 +++++++++---------------------------- man/figures |only man/get_bill_votes.Rd | 3 man/get_speech.Rd | 2 man/plot_bill.Rd | 2 man/secciones_pba.Rd |only man/show_arg_codes.Rd | 3 man/show_available_bills.Rd | 5 vignettes/compute.Rmd | 2 vignettes/data.Rmd | 2 vignettes/results.Rmd | 2 35 files changed, 583 insertions(+), 985 deletions(-)
Title: Create Simple Packages Which Do not Upset R Package Checks
Description: Provides a function kitten() which creates cute little
packages which pass R package checks. This sets it apart from
package.skeleton() which it calls, and which leaves imperfect files
behind. As this is not exactly helpful for beginners, kitten() offers
an alternative. Unit test support can be added via the 'tinytest'
package (if present), and documentation-creation support can be
added via 'roxygen2' (if present).
Author: Dirk Eddelbuettel
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between pkgKitten versions 0.2.0 dated 2020-09-27 and 0.2.1 dated 2021-02-22
ChangeLog | 27 +++++++++++++++++++++++++++ DESCRIPTION | 15 ++++++++------- MD5 | 13 +++++++------ R/pkgKitten.R | 35 +++++++++++++++++++++++++++-------- README.md | 2 +- inst/NEWS.Rd | 9 +++++++++ inst/replacements/hello2.R |only man/kitten.Rd | 6 +++++- 8 files changed, 84 insertions(+), 23 deletions(-)
Title: Coloured Formatting for Columns
Description: Provides 'pillar' and 'colonnade' generics designed
for formatting columns of data using the full range of colours
provided by modern terminals.
Author: Kirill Müller [aut, cre],
Hadley Wickham [aut],
RStudio [cph]
Maintainer: Kirill Müller <krlmlr+r@mailbox.org>
Diff between pillar versions 1.4.7 dated 2020-11-20 and 1.5.0 dated 2021-02-22
pillar-1.4.7/pillar/tests/testthat/bw-out |only pillar-1.4.7/pillar/tests/testthat/out |only pillar-1.4.7/pillar/tests/testthat/out-native |only pillar-1.4.7/pillar/tests/testthat/test-aaa.R |only pillar-1.5.0/pillar/DESCRIPTION | 22 pillar-1.5.0/pillar/LICENSE |only pillar-1.5.0/pillar/MD5 | 698 ++-------- pillar-1.5.0/pillar/NAMESPACE | 50 pillar-1.5.0/pillar/NEWS.md | 51 pillar-1.5.0/pillar/R/compat-purrr.R | 48 pillar-1.5.0/pillar/R/continuation-data.R |only pillar-1.5.0/pillar/R/ctl_colonnade.R |only pillar-1.5.0/pillar/R/ctl_compound.R |only pillar-1.5.0/pillar/R/ctl_new_pillar.R |only pillar-1.5.0/pillar/R/ctl_pillar.R |only pillar-1.5.0/pillar/R/ctl_pillar_component.R |only pillar-1.5.0/pillar/R/deprecated.R | 2 pillar-1.5.0/pillar/R/dim.R | 14 pillar-1.5.0/pillar/R/extent.R | 8 pillar-1.5.0/pillar/R/glimpse.R |only pillar-1.5.0/pillar/R/multi.R | 192 +- pillar-1.5.0/pillar/R/ornament.R | 19 pillar-1.5.0/pillar/R/pillar.R | 80 - pillar-1.5.0/pillar/R/pluralise.R |only pillar-1.5.0/pillar/R/shaft-.R | 17 pillar-1.5.0/pillar/R/show_source.R |only pillar-1.5.0/pillar/R/styles.R | 69 pillar-1.5.0/pillar/R/tbl-format-body.R |only pillar-1.5.0/pillar/R/tbl-format-footer.R |only pillar-1.5.0/pillar/R/tbl-format-header.R |only pillar-1.5.0/pillar/R/tbl-format-setup.R |only pillar-1.5.0/pillar/R/tbl-format.R |only pillar-1.5.0/pillar/R/tbl-sum.R |only pillar-1.5.0/pillar/R/tbl.R |only pillar-1.5.0/pillar/R/testthat.R | 27 pillar-1.5.0/pillar/R/tibble-opt.R |only pillar-1.5.0/pillar/R/title.R | 13 pillar-1.5.0/pillar/R/type-sum.R | 38 pillar-1.5.0/pillar/R/type.R | 18 pillar-1.5.0/pillar/R/utils.R | 21 pillar-1.5.0/pillar/R/vctrs.R | 7 pillar-1.5.0/pillar/R/zzz.R | 59 pillar-1.5.0/pillar/README.md | 153 -- pillar-1.5.0/pillar/build |only pillar-1.5.0/pillar/inst |only pillar-1.5.0/pillar/man/colonnade.Rd | 12 pillar-1.5.0/pillar/man/ctl_new_pillar.Rd |only pillar-1.5.0/pillar/man/expect_known_display.Rd | 9 pillar-1.5.0/pillar/man/extra_cols.Rd | 1 pillar-1.5.0/pillar/man/format_tbl.Rd |only pillar-1.5.0/pillar/man/glimpse.Rd |only pillar-1.5.0/pillar/man/new_pillar.Rd |only pillar-1.5.0/pillar/man/new_pillar_component.Rd |only pillar-1.5.0/pillar/man/new_pillar_shaft.Rd | 2 pillar-1.5.0/pillar/man/new_pillar_type.Rd | 1 pillar-1.5.0/pillar/man/new_tbl_format_setup.Rd |only pillar-1.5.0/pillar/man/pillar-package.Rd | 3 pillar-1.5.0/pillar/man/pillar.Rd | 37 pillar-1.5.0/pillar/man/pillar_shaft.Rd | 2 pillar-1.5.0/pillar/man/squeeze.Rd |only pillar-1.5.0/pillar/man/tbl_format_body.Rd |only pillar-1.5.0/pillar/man/tbl_format_footer.Rd |only pillar-1.5.0/pillar/man/tbl_format_header.Rd |only pillar-1.5.0/pillar/man/tbl_format_setup.Rd |only pillar-1.5.0/pillar/man/tbl_sum.Rd |only pillar-1.5.0/pillar/man/type_sum.Rd | 15 pillar-1.5.0/pillar/tests/testthat/_snaps |only pillar-1.5.0/pillar/tests/testthat/helper-foo-tbl.R |only pillar-1.5.0/pillar/tests/testthat/helper-output.R | 87 - pillar-1.5.0/pillar/tests/testthat/helper-testthat.R |only pillar-1.5.0/pillar/tests/testthat/helper-type-sum.R |only pillar-1.5.0/pillar/tests/testthat/helper-unknown-rows.R |only pillar-1.5.0/pillar/tests/testthat/setup.R |only pillar-1.5.0/pillar/tests/testthat/test-ctl_colonnade.R |only pillar-1.5.0/pillar/tests/testthat/test-ctl_colonnade_1.R |only pillar-1.5.0/pillar/tests/testthat/test-ctl_colonnade_2.R |only pillar-1.5.0/pillar/tests/testthat/test-ctl_new_pillar.R |only pillar-1.5.0/pillar/tests/testthat/test-dim.R | 11 pillar-1.5.0/pillar/tests/testthat/test-distribute.R | 2 pillar-1.5.0/pillar/tests/testthat/test-format_asis.R | 6 pillar-1.5.0/pillar/tests/testthat/test-format_character.R | 198 +- pillar-1.5.0/pillar/tests/testthat/test-format_date.R | 4 pillar-1.5.0/pillar/tests/testthat/test-format_decimal.R | 42 pillar-1.5.0/pillar/tests/testthat/test-format_factor.R | 8 pillar-1.5.0/pillar/tests/testthat/test-format_integer.R | 8 pillar-1.5.0/pillar/tests/testthat/test-format_integer64.R | 18 pillar-1.5.0/pillar/tests/testthat/test-format_list.R | 10 pillar-1.5.0/pillar/tests/testthat/test-format_list_of.R |only pillar-1.5.0/pillar/tests/testthat/test-format_logical.R | 4 pillar-1.5.0/pillar/tests/testthat/test-format_lubridate.R | 4 pillar-1.5.0/pillar/tests/testthat/test-format_multi.R | 692 +++------ pillar-1.5.0/pillar/tests/testthat/test-format_multi_fuzz.R |only pillar-1.5.0/pillar/tests/testthat/test-format_multi_fuzz_2.R |only pillar-1.5.0/pillar/tests/testthat/test-format_numeric.R | 16 pillar-1.5.0/pillar/tests/testthat/test-format_rowid.R | 12 pillar-1.5.0/pillar/tests/testthat/test-format_scientific.R | 22 pillar-1.5.0/pillar/tests/testthat/test-format_survival.R |only pillar-1.5.0/pillar/tests/testthat/test-format_time.R | 10 pillar-1.5.0/pillar/tests/testthat/test-format_unspecified.R |only pillar-1.5.0/pillar/tests/testthat/test-glimpse.R |only pillar-1.5.0/pillar/tests/testthat/test-new-pillar-title.R | 2 pillar-1.5.0/pillar/tests/testthat/test-new-pillar-type.R | 2 pillar-1.5.0/pillar/tests/testthat/test-obj-sum.R | 7 pillar-1.5.0/pillar/tests/testthat/test-ornament.R |only pillar-1.5.0/pillar/tests/testthat/test-tbl-format-body.R |only pillar-1.5.0/pillar/tests/testthat/test-tbl-format-footer.R |only pillar-1.5.0/pillar/tests/testthat/test-tbl-format-header.R |only pillar-1.5.0/pillar/tests/testthat/test-tbl-format-setup.R |only pillar-1.5.0/pillar/tests/testthat/test-tbl-format.R |only pillar-1.5.0/pillar/tests/testthat/test-tibble-opt.R |only pillar-1.5.0/pillar/tests/testthat/test-ticks.R | 2 pillar-1.5.0/pillar/tests/testthat/test-title.R | 21 pillar-1.5.0/pillar/tests/testthat/test-type_sum.R |only pillar-1.5.0/pillar/tests/testthat/test-zzx-format_character.R |only pillar-1.5.0/pillar/vignettes |only 115 files changed, 1187 insertions(+), 1689 deletions(-)
Title: Connect to 'AWS Athena' using R 'AWS SDK' 'paws' ('DBI'
Interface)
Description: Designed to be compatible with the 'R' package 'DBI' (Database Interface)
when connecting to Amazon Web Service ('AWS') Athena <https://aws.amazon.com/athena/>.
To do this the 'R' 'AWS' Software Development Kit ('SDK') 'paws'
<https://github.com/paws-r/paws> is used as a driver.
Author: Dyfan Jones [aut, cre]
Maintainer: Dyfan Jones <dyfan.r.jones@gmail.com>
Diff between noctua versions 1.10.0 dated 2021-01-20 and 2.0.0 dated 2021-02-22
DESCRIPTION | 10 MD5 | 59 ++-- NEWS.md | 152 +++++++++- R/Connection.R | 203 ++++++-------- R/DataTypes.R | 30 +- R/Driver.R | 20 + R/File_Parser.R | 60 +++- R/Options.R | 40 ++ R/Result.R | 221 +++++++++------ R/Table.R | 83 ++--- R/View.R | 25 + R/athena_low_api.R | 10 R/column_parser.R |only R/dplyr_integration.R | 13 R/noctua.R | 2 R/utils.R | 175 ++++++++---- inst/doc/aws_athena_query_caching.html | 343 ++++++------------------ inst/doc/aws_s3_backend.html | 233 ++-------------- inst/doc/changing_backend_file_parser.html | 273 +++---------------- inst/doc/convert_and_save_cost.html | 337 +++++------------------ inst/doc/getting_started.html | 411 ++++++++--------------------- inst/doc/how_to_retry.html | 257 +++--------------- man/dbConnect-AthenaDriver-method.Rd | 16 + man/noctua-package.Rd | 2 man/noctua_options.Rd | 13 tests/testthat/test-datatransfer-vroom.R | 9 tests/testthat/test-dbDisconnect.R | 1 tests/testthat/test-dplyr-sql-trans-env.R | 37 +- tests/testthat/test-exist-remove.R | 3 tests/testthat/test-file-parser.R |only tests/testthat/test-metadata.R | 35 +- tests/testthat/test-view.R |only 32 files changed, 1227 insertions(+), 1846 deletions(-)
Title: Fixed Rank Kriging
Description: Fixed Rank Kriging is a tool for spatial/spatio-temporal modelling
and prediction with large datasets. The approach, discussed in Cressie and
Johannesson (2008) <DOI:10.1111/j.1467-9868.2007.00633.x>, decomposes the field,
and hence the covariance function, using a fixed set of n basis functions,
where n is typically much smaller than the number of data points (or polygons) m.
The method naturally allows for non-stationary, anisotropic covariance functions
and the use of observations with varying support (with known error variance). The
projected field is a key building block of the Spatial Random Effects (SRE) model,
on which this package is based. The package FRK provides helper functions to model,
fit, and predict using an SRE with relative ease.
Author: Andrew Zammit-Mangion [aut, cre]
Maintainer: Andrew Zammit-Mangion <andrewzm@gmail.com>
Diff between FRK versions 0.2.2.1 dated 2020-04-01 and 1.0.0 dated 2021-02-22
FRK-0.2.2.1/FRK/data/datalist |only FRK-0.2.2.1/FRK/inst/doc/FRK_intro.R |only FRK-0.2.2.1/FRK/inst/doc/FRK_intro.Rnw |only FRK-0.2.2.1/FRK/vignettes |only FRK-1.0.0/FRK/DESCRIPTION | 16 FRK-1.0.0/FRK/MD5 | 47 FRK-1.0.0/FRK/R/AllClass.R | 270 +- FRK-1.0.0/FRK/R/AllGeneric.R | 12 FRK-1.0.0/FRK/R/FRK.R | 74 FRK-1.0.0/FRK/R/SREutils.R | 3590 +++++++++++++++---------------- FRK-1.0.0/FRK/R/datadoc.R | 192 - FRK-1.0.0/FRK/R/geometryfns.R | 59 FRK-1.0.0/FRK/build/vignette.rds |binary FRK-1.0.0/FRK/data/AIRS_05_2003.rda |binary FRK-1.0.0/FRK/data/NOAA_df_1990.rda |binary FRK-1.0.0/FRK/data/isea3h.rda |binary FRK-1.0.0/FRK/data/worldmap.rda |binary FRK-1.0.0/FRK/man/Basis_data.frame.Rd | 1 FRK-1.0.0/FRK/man/SRE.Rd | 12 FRK-1.0.0/FRK/man/auto_basis.Rd | 10 FRK-1.0.0/FRK/man/eval_basis.Rd | 6 FRK-1.0.0/FRK/man/figures |only FRK-1.0.0/FRK/man/nres.Rd | 7 FRK-1.0.0/FRK/man/show_basis.Rd | 4 FRK-1.0.0/FRK/tests/testthat/test_BAUs.R | 21 25 files changed, 2162 insertions(+), 2159 deletions(-)
Title: Wrapper for 'FFTW3' Includes: One-Dimensional, Two-Dimensional,
Three-Dimensional, and Multivariate Transforms
Description: Provides a wrapper for several 'FFTW' functions. This package provides access to the two-dimensional 'FFT', the multivariate 'FFT', and the one-dimensional real to complex 'FFT' using the 'FFTW3' library. The package includes the functions fftw() and mvfftw() which are designed to mimic the functionality of the R functions fft() and mvfft(). The 'FFT' functions have a parameter that allows them to not return the redundant complex conjugate when the input is real data.
Author: Karim Rahim <karim.rahim@queensu.ca>
Maintainer: Karim Rahim <karim.rahim@queensu.ca>
Diff between fftwtools versions 0.9-9 dated 2020-10-03 and 0.9-10 dated 2021-02-22
DESCRIPTION | 12 ++--- MD5 | 23 +++++------ NAMESPACE | 2 R/fftwtools.R | 79 ++++++++++++++++++++++++++++++++++++++ build/vignette.rds |binary configure.ac | 1 inst/doc/testTimeAndSimpleUse.pdf |binary man/fftw2d.Rd | 10 +++- man/fftw3d.Rd |only src/Makevars | 1 src/fftwtools.c | 52 +++++++++++++++++++++++++ src/fftwtools.h | 8 +++ src/fftwtools_init.c | 6 ++ 13 files changed, 174 insertions(+), 20 deletions(-)
Title: E-Statistics: Multivariate Inference via the Energy of Data
Description: E-statistics (energy) tests and statistics for multivariate and univariate inference,
including distance correlation, one-sample, two-sample, and multi-sample tests for
comparing multivariate distributions, are implemented. Measuring and testing
multivariate independence based on distance correlation, partial distance correlation,
multivariate goodness-of-fit tests, k-groups and hierarchical clustering based on energy
distance, testing for multivariate normality, distance components (disco) for non-parametric
analysis of structured data, and other energy statistics/methods are implemented.
Author: Maria Rizzo [aut, cre],
Gabor Szekely [aut]
Maintainer: Maria Rizzo <mrizzo@bgsu.edu>
Diff between energy versions 1.7-7 dated 2019-12-07 and 1.7-8 dated 2021-02-22
energy-1.7-7/energy/man/mvnorm-etest.Rd |only energy-1.7-7/energy/man/poisson.mtest.Rd |only energy-1.7-7/energy/src/mvnorm.cpp |only energy-1.7-8/energy/DESCRIPTION | 11 energy-1.7-8/energy/MD5 | 87 +++--- energy-1.7-8/energy/NAMESPACE | 114 ++++---- energy-1.7-8/energy/NEWS.md | 337 +++++++++++++------------ energy-1.7-8/energy/R/Ecluster.R | 36 +- energy-1.7-8/energy/R/Emvnorm.R | 271 +++++++++++--------- energy-1.7-8/energy/R/Epoisson.R | 140 ++++++++-- energy-1.7-8/energy/R/RcppExports.R | 8 energy-1.7-8/energy/R/centering.R | 62 ++-- energy-1.7-8/energy/R/dcorT.R | 164 ++++++------ energy-1.7-8/energy/R/dcov.R | 392 +++++++++++++++--------------- energy-1.7-8/energy/R/dcovu.R | 86 +++--- energy-1.7-8/energy/R/disco.R | 376 ++++++++++++++-------------- energy-1.7-8/energy/R/edist.R | 148 +++++------ energy-1.7-8/energy/R/kgroups.R | 138 +++++----- energy-1.7-8/energy/R/pdcor.R | 48 +-- energy-1.7-8/energy/R/pdcov-test.R | 196 +++++++-------- energy-1.7-8/energy/build |only energy-1.7-8/energy/man/U_product.Rd | 2 energy-1.7-8/energy/man/centering.Rd | 2 energy-1.7-8/energy/man/dcorT.Rd | 6 energy-1.7-8/energy/man/dcov.Rd | 4 energy-1.7-8/energy/man/dcov.test.Rd | 4 energy-1.7-8/energy/man/dcov2d.Rd | 2 energy-1.7-8/energy/man/dcovU_stats.Rd | 4 energy-1.7-8/energy/man/dcovu.Rd | 4 energy-1.7-8/energy/man/disco.Rd | 2 energy-1.7-8/energy/man/edist.Rd | 226 ++++++++--------- energy-1.7-8/energy/man/eigen.Rd | 2 energy-1.7-8/energy/man/energy-defunct.Rd | 5 energy-1.7-8/energy/man/energy-package.Rd | 4 energy-1.7-8/energy/man/energy.hclust.Rd | 2 energy-1.7-8/energy/man/eqdist.etest.Rd | 2 energy-1.7-8/energy/man/indep.test.Rd | 20 - energy-1.7-8/energy/man/mvI.test.Rd | 2 energy-1.7-8/energy/man/mvnorm-test.Rd |only energy-1.7-8/energy/man/normalGOF.Rd | 4 energy-1.7-8/energy/man/poisson.Rd |only energy-1.7-8/energy/src/RcppExports.cpp | 22 - energy-1.7-8/energy/src/centering.cpp | 9 energy-1.7-8/energy/src/energy.c | 50 --- energy-1.7-8/energy/src/energy_init.c | 6 energy-1.7-8/energy/src/partial-dcor.cpp | 5 energy-1.7-8/energy/src/poissonM.cpp |only energy-1.7-8/energy/src/projection.cpp | 5 48 files changed, 1539 insertions(+), 1469 deletions(-)
Title: Helpers for Model Coefficients Tibbles
Description: Provides suite of functions to work with regression
model 'broom::tidy()' tibbles. The suite includes functions to group
regression model terms by variable, insert reference and header rows
for categorical variables, add variable labels, and more.
Author: Joseph Larmarange [aut, cre] (<https://orcid.org/0000-0001-7097-700X>),
Daniel D. Sjoberg [aut] (<https://orcid.org/0000-0003-0862-2018>)
Maintainer: Joseph Larmarange <joseph@larmarange.net>
Diff between broom.helpers versions 1.1.0 dated 2020-11-24 and 1.2.0 dated 2021-02-22
DESCRIPTION | 15 MD5 | 151 - NAMESPACE | 36 NEWS.md | 67 R/broom.helpers-package.R | 9 R/helpers.R | 6 R/model_compute_terms_contributions.R |only R/model_get_coefficients_type.R | 6 R/model_get_contrasts.R | 6 R/model_get_model_matrix.R | 23 R/model_get_n.R |only R/model_get_offset.R |only R/model_get_response.R |only R/model_get_terms.R |only R/model_get_weights.R |only R/model_get_xlevels.R | 8 R/model_identify_variables.R | 33 R/model_list_contrasts.R | 16 R/model_list_terms_levels.R | 4 R/model_list_variables.R | 19 R/select_helpers.R | 17 R/select_utilities.R | 15 R/tidy_add_coefficients_type.R | 7 R/tidy_add_contrasts.R | 7 R/tidy_add_estimate_to_reference_rows.R | 16 R/tidy_add_header_rows.R | 10 R/tidy_add_n.R |only R/tidy_add_reference_rows.R | 15 R/tidy_add_term_labels.R | 46 R/tidy_add_variable_labels.R | 15 R/tidy_and_attach.R | 12 R/tidy_disambiguate_terms.R |only R/tidy_identify_variables.R | 36 R/tidy_plus_plus.R | 42 README.md | 208 - build/vignette.rds |binary inst/WORDLIST | 8 inst/doc/tidy.R | 69 inst/doc/tidy.Rmd | 84 inst/doc/tidy.html | 2704 +++++-------------- man/model_compute_terms_contributions.Rd |only man/model_get_coefficients_type.Rd | 8 man/model_get_contrasts.Rd | 9 man/model_get_model.Rd | 6 man/model_get_model_frame.Rd | 6 man/model_get_model_matrix.Rd | 19 man/model_get_n.Rd |only man/model_get_nlevels.Rd | 6 man/model_get_offset.Rd |only man/model_get_response.Rd |only man/model_get_terms.Rd |only man/model_get_weights.Rd |only man/model_get_xlevels.Rd | 12 man/model_identify_variables.Rd | 9 man/model_list_contrasts.Rd | 13 man/model_list_terms_levels.Rd | 8 man/model_list_variables.Rd | 6 man/select_helpers.Rd | 6 man/tidy_add_coefficients_type.Rd | 117 man/tidy_add_contrasts.Rd | 8 man/tidy_add_estimate_to_reference_rows.Rd | 5 man/tidy_add_header_rows.Rd | 2 man/tidy_add_n.Rd |only man/tidy_add_reference_rows.Rd | 5 man/tidy_add_term_labels.Rd | 2 man/tidy_add_variable_labels.Rd | 2 man/tidy_attach_model.Rd | 134 man/tidy_disambiguate_terms.Rd |only man/tidy_identify_variables.Rd | 14 man/tidy_plus_plus.Rd | 17 man/tidy_remove_intercept.Rd | 88 man/tidy_select_variables.Rd | 2 tests/testthat/test-add_coefficients_type.R | 20 tests/testthat/test-add_contrasts.R | 13 tests/testthat/test-add_estimate_to_reference_rows.R | 12 tests/testthat/test-add_header_rows.R | 17 tests/testthat/test-add_n.R |only tests/testthat/test-add_reference_rows.R | 9 tests/testthat/test-add_term_labels.R | 16 tests/testthat/test-add_variable_labels.R | 2 tests/testthat/test-disambiguate_terms.R |only tests/testthat/test-identify_variables.R | 31 tests/testthat/test-model_get_n.R |only tests/testthat/test-select_helpers.R | 20 tests/testthat/test-tidy_plus_plus.R | 174 + vignettes/tidy.Rmd | 84 86 files changed, 2164 insertions(+), 2448 deletions(-)
Title: Non-Parametric Causal Effects of Feasible Interventions Based on
Modified Treatment Policies
Description: Non-parametric estimators for casual effects based on longitudinal modified treatment
policies as described in Diaz, Williams, and Hoffman (<arXiv:2006.01366>), traditional point treatment,
and traditional longitudinal effects. Continuous, binary, and categorical treatments are allowed as well are
censored outcomes. The treatment mechanism is estimated via a density ratio classification procedure
irrespective of treatment variable type. For both continuous and binary outcomes, additive treatment effects
can be calculated and relative risks and odds ratios may be calculated for binary outcomes.
Author: Nicholas Williams [aut, cre, cph]
(<https://orcid.org/0000-0002-1378-4831>),
Iván Díaz [aut, cph] (<https://orcid.org/0000-0001-9056-2047>)
Maintainer: Nicholas Williams <niw4001@med.cornell.edu>
Diff between lmtp versions 0.0.5 dated 2020-07-18 and 0.9.0 dated 2021-02-22
lmtp-0.0.5/lmtp/LICENSE |only lmtp-0.0.5/lmtp/tests/testthat/test-contrast.txt |only lmtp-0.0.5/lmtp/tests/testthat/test-contrasts.R |only lmtp-0.0.5/lmtp/tests/testthat/test-detect_sl3.txt |only lmtp-0.9.0/lmtp/DESCRIPTION | 19 lmtp-0.9.0/lmtp/MD5 | 93 +-- lmtp-0.9.0/lmtp/NAMESPACE | 8 lmtp-0.9.0/lmtp/NEWS.md |only lmtp-0.9.0/lmtp/R/checks-warnings.R | 101 +-- lmtp-0.9.0/lmtp/R/contrasts.R | 33 - lmtp-0.9.0/lmtp/R/cross-fit.R | 65 +- lmtp-0.9.0/lmtp/R/data.R | 24 lmtp-0.9.0/lmtp/R/estimators.R | 236 ++++----- lmtp-0.9.0/lmtp/R/lmtp-package.R | 3 lmtp-0.9.0/lmtp/R/m-engine.R | 372 ++++++-------- lmtp-0.9.0/lmtp/R/nodelist.R | 42 - lmtp-0.9.0/lmtp/R/prepare-estimators.R | 117 ++-- lmtp-0.9.0/lmtp/R/print.R | 1 lmtp-0.9.0/lmtp/R/r-engine.R | 99 +-- lmtp-0.9.0/lmtp/R/shift.R | 1 lmtp-0.9.0/lmtp/R/sl.R | 71 -- lmtp-0.9.0/lmtp/R/theta.R | 84 +-- lmtp-0.9.0/lmtp/R/tidy.R | 1 lmtp-0.9.0/lmtp/R/utils.R | 82 +-- lmtp-0.9.0/lmtp/R/zzz.R |only lmtp-0.9.0/lmtp/README.md | 95 ++- lmtp-0.9.0/lmtp/build |only lmtp-0.9.0/lmtp/data/sim_timevary_surv.rda |only lmtp-0.9.0/lmtp/inst/CITATION | 2 lmtp-0.9.0/lmtp/inst/doc |only lmtp-0.9.0/lmtp/man/create_node_list.Rd | 91 +-- lmtp-0.9.0/lmtp/man/event_locf.Rd | 50 - lmtp-0.9.0/lmtp/man/lmtp-package.Rd | 51 - lmtp-0.9.0/lmtp/man/lmtp_contrast.Rd | 140 ++--- lmtp-0.9.0/lmtp/man/lmtp_ipw.Rd | 513 ++++++++++--------- lmtp-0.9.0/lmtp/man/lmtp_sdr.Rd | 548 ++++++++++----------- lmtp-0.9.0/lmtp/man/lmtp_sub.Rd | 520 ++++++++++--------- lmtp-0.9.0/lmtp/man/lmtp_tmle.Rd | 547 ++++++++++---------- lmtp-0.9.0/lmtp/man/reexports.Rd | 32 - lmtp-0.9.0/lmtp/man/sim_cens.Rd | 52 - lmtp-0.9.0/lmtp/man/sim_point_surv.Rd | 70 +- lmtp-0.9.0/lmtp/man/sim_t4.Rd | 58 +- lmtp-0.9.0/lmtp/man/sim_timevary_surv.Rd |only lmtp-0.9.0/lmtp/man/static_binary_off.Rd | 66 +- lmtp-0.9.0/lmtp/man/static_binary_on.Rd | 66 +- lmtp-0.9.0/lmtp/man/tidy.lmtp.Rd | 56 +- lmtp-0.9.0/lmtp/tests/testthat.R | 8 lmtp-0.9.0/lmtp/tests/testthat/test-censoring.R | 22 lmtp-0.9.0/lmtp/tests/testthat/test-checks.R | 69 ++ lmtp-0.9.0/lmtp/tests/testthat/test-dynamic.R | 14 lmtp-0.9.0/lmtp/tests/testthat/test-survey.R |only lmtp-0.9.0/lmtp/vignettes |only 52 files changed, 2353 insertions(+), 2169 deletions(-)
Title: Creates Ideal Data for Generalized Linear Models
Description: Have you ever struggled to find "good data" for a generalized linear model? Would you like
to test how quickly statistics converge to parameters, or learn how picking different
link functions affects model performance? This package creates ideal data for both common
and novel generalized linear models so your questions can be empirically answered.
Author: Greg McMahan
Maintainer: Greg McMahan <gmcmacran@gmail.com>
Diff between GlmSimulatoR versions 0.2.3 dated 2020-06-16 and 0.2.4 dated 2021-02-22
DESCRIPTION | 8 - MD5 | 55 ++++---- NEWS.md | 7 + R/internal_functions.R | 12 - R/simulating_functions.R | 18 +- README.md | 24 --- build/vignette.rds |binary inst/doc/count_data_and_overdispersion.R | 26 +-- inst/doc/count_data_and_overdispersion.html | 35 ++--- inst/doc/dealing_with_right_skewed_data.R | 14 +- inst/doc/dealing_with_right_skewed_data.html | 45 +++--- inst/doc/exploring_links_for_the_gaussian_distribution.R | 30 ++-- inst/doc/exploring_links_for_the_gaussian_distribution.html | 33 ++-- inst/doc/introduction.R | 8 - inst/doc/introduction.html | 19 +- inst/doc/stepwise_search.R | 10 - inst/doc/stepwise_search.html | 25 +-- inst/doc/tweedie_distribution.R | 6 inst/doc/tweedie_distribution.html | 19 +- man/figures/README-example1-1.png |binary man/simulate_gaussian.Rd | 80 +++++++++--- tests/testthat/test_internal_functions.R |only tests/testthat/test_simulate_binomial.R | 12 + tests/testthat/test_simulate_gamma.R | 12 + tests/testthat/test_simulate_inverse_gaussian.R | 8 + tests/testthat/test_simulate_negative_binomial.R | 12 + tests/testthat/test_simulate_poisson.R | 8 + tests/testthat/test_simulate_tweedie.R | 12 + tests/testthat/test_simullate_gaussian.R | 8 + 29 files changed, 321 insertions(+), 225 deletions(-)
Title: Running Operations for Vectors
Description: Lightweight library for rolling windows operations. Package enables
full control over the window length, window lag and a time indices. With a runner
one can apply any R function on a rolling windows. The package eases work with
equally and unequally spaced time series.
Author: Dawid Kałędkowski [aut, cre] (<https://orcid.org/0000-0001-9533-457X>)
Maintainer: Dawid Kałędkowski <dawid.kaledkowski@gmail.com>
Diff between runner versions 0.3.7 dated 2020-05-16 and 0.3.8 dated 2021-02-22
runner-0.3.7/runner/inst/WORDLIST |only runner-0.3.7/runner/tests/spelling.R |only runner-0.3.7/runner/tests/testthat |only runner-0.3.7/runner/tests/testthat.R |only runner-0.3.8/runner/.Rinstignore |only runner-0.3.8/runner/DESCRIPTION | 19 runner-0.3.8/runner/MD5 | 94 +- runner-0.3.8/runner/NAMESPACE | 5 runner-0.3.8/runner/NEWS.md | 8 runner-0.3.8/runner/R/run.R | 782 ++++++++++------- runner-0.3.8/runner/R/run_by.R |only runner-0.3.8/runner/README.md | 48 - runner-0.3.8/runner/build/vignette.rds |binary runner-0.3.8/runner/inst/doc/apply_any_r_function.R | 21 runner-0.3.8/runner/inst/doc/apply_any_r_function.Rmd | 35 runner-0.3.8/runner/inst/doc/apply_any_r_function.html | 649 +++++--------- runner-0.3.8/runner/inst/doc/built-in_functions.html | 309 +----- runner-0.3.8/runner/inst/doc/runner_examples.R | 390 ++++---- runner-0.3.8/runner/inst/doc/runner_examples.Rmd | 22 runner-0.3.8/runner/inst/doc/runner_examples.html | 656 ++++---------- runner-0.3.8/runner/inst/tinytest |only runner-0.3.8/runner/man/fill_run.Rd | 2 runner-0.3.8/runner/man/k_by.Rd | 14 runner-0.3.8/runner/man/lag_run.Rd | 12 runner-0.3.8/runner/man/length_run.Rd | 13 runner-0.3.8/runner/man/max_run.Rd | 18 runner-0.3.8/runner/man/min_run.Rd | 18 runner-0.3.8/runner/man/minmax_run.Rd | 2 runner-0.3.8/runner/man/reformat_k.Rd | 8 runner-0.3.8/runner/man/run_by.Rd | 22 runner-0.3.8/runner/man/runner.Rd | 197 +++- runner-0.3.8/runner/man/streak_run.Rd | 16 runner-0.3.8/runner/man/this_group.Rd | 10 runner-0.3.8/runner/man/which_run.Rd | 18 runner-0.3.8/runner/man/window_run.Rd | 18 runner-0.3.8/runner/tests/tinytest.R |only runner-0.3.8/runner/vignettes/apply_any_r_function.Rmd | 35 runner-0.3.8/runner/vignettes/runner_examples.Rmd | 22 38 files changed, 1682 insertions(+), 1781 deletions(-)
Title: React Helpers
Description: Make it easy to use 'React' in R with 'htmlwidget' scaffolds,
helper dependency functions, an embedded 'Babel' 'transpiler',
and examples.
Author: Facebook Inc [aut, cph] (React library in lib, https://reactjs.org/;
see AUTHORS for full list of contributors),
Michel Weststrate [aut, cph] (mobx library in lib,
https://github.com/mobxjs),
Kent Russell [aut, cre] (R interface),
Alan Dipert [aut] (R interface)
Maintainer: Kent Russell <kent.russell@timelyportfolio.com>
Diff between reactR versions 0.4.3 dated 2020-07-12 and 0.4.4 dated 2021-02-22
DESCRIPTION | 17 - MD5 | 48 +-- NEWS.md | 10 R/meta.R | 2 R/scaffold_input.R | 4 R/scaffold_widget.R | 4 README.md | 17 - inst/doc/intro_htmlwidgets.Rmd | 8 inst/doc/intro_htmlwidgets.html | 22 + inst/doc/intro_inputs.Rmd | 8 inst/doc/intro_inputs.html | 22 + inst/doc/intro_reactR.Rmd | 6 inst/doc/intro_reactR.html | 538 +++++++++++++++++------------------ inst/templates/input_r.txt | 1 inst/templates/package.json.txt | 8 inst/templates/webpack.config.js.txt | 7 inst/templates/widget_r.txt | 26 - inst/www/react/react-dom.min.js | 469 +++++++++++++++--------------- inst/www/react/react.min.js | 49 +-- man/React.Rd | 70 ++-- man/scaffoldReactShinyInput.Rd | 4 man/scaffoldReactWidget.Rd | 4 vignettes/intro_htmlwidgets.Rmd | 8 vignettes/intro_inputs.Rmd | 8 vignettes/intro_reactR.Rmd | 6 25 files changed, 708 insertions(+), 658 deletions(-)
Title: Machine Learning in R
Description: Interface to a large number of classification and
regression techniques, including machine-readable parameter
descriptions. There is also an experimental extension for survival
analysis, clustering and general, example-specific cost-sensitive
learning. Generic resampling, including cross-validation,
bootstrapping and subsampling. Hyperparameter tuning with modern
optimization techniques, for single- and multi-objective problems.
Filter and wrapper methods for feature selection. Extension of basic
learners with additional operations common in machine learning, also
allowing for easy nested resampling. Most operations can be
parallelized.
Author: Bernd Bischl [aut] (<https://orcid.org/0000-0001-6002-6980>),
Michel Lang [aut] (<https://orcid.org/0000-0001-9754-0393>),
Lars Kotthoff [aut],
Patrick Schratz [aut, cre] (<https://orcid.org/0000-0003-0748-6624>),
Julia Schiffner [aut],
Jakob Richter [aut],
Zachary Jones [aut],
Giuseppe Casalicchio [aut] (<https://orcid.org/0000-0001-5324-5966>),
Mason Gallo [aut],
Jakob Bossek [ctb] (<https://orcid.org/0000-0002-4121-4668>),
Erich Studerus [ctb] (<https://orcid.org/0000-0003-4233-0182>),
Leonard Judt [ctb],
Tobias Kuehn [ctb],
Pascal Kerschke [ctb] (<https://orcid.org/0000-0003-2862-1418>),
Florian Fendt [ctb],
Philipp Probst [ctb] (<https://orcid.org/0000-0001-8402-6790>),
Xudong Sun [ctb] (<https://orcid.org/0000-0003-3269-2307>),
Janek Thomas [ctb] (<https://orcid.org/0000-0003-4511-6245>),
Bruno Vieira [ctb],
Laura Beggel [ctb] (<https://orcid.org/0000-0002-8872-8535>),
Quay Au [ctb] (<https://orcid.org/0000-0002-5252-8902>),
Martin Binder [ctb],
Florian Pfisterer [ctb],
Stefan Coors [ctb],
Steve Bronder [ctb],
Alexander Engelhardt [ctb],
Christoph Molnar [ctb],
Annette Spooner [ctb]
Maintainer: Patrick Schratz <patrick.schratz@gmail.com>
Diff between mlr versions 2.18.0 dated 2020-10-05 and 2.19.0 dated 2021-02-22
mlr-2.18.0/mlr/R/RLearner_surv_CoxBoost.R |only mlr-2.18.0/mlr/R/RLearner_surv_cv.CoxBoost.R |only mlr-2.18.0/mlr/tests/run-base.R |only mlr-2.18.0/mlr/tests/run-classif1.R |only mlr-2.18.0/mlr/tests/run-classif2.R |only mlr-2.18.0/mlr/tests/run-cluster.R |only mlr-2.18.0/mlr/tests/run-featsel.R |only mlr-2.18.0/mlr/tests/run-learners-classif.R |only mlr-2.18.0/mlr/tests/run-learners-classiflabelswitch.R |only mlr-2.18.0/mlr/tests/run-learners-cluster.R |only mlr-2.18.0/mlr/tests/run-learners-general.R |only mlr-2.18.0/mlr/tests/run-learners-multilabel.R |only mlr-2.18.0/mlr/tests/run-learners-regr.R |only mlr-2.18.0/mlr/tests/run-learners-surv.R |only mlr-2.18.0/mlr/tests/run-lint.R |only mlr-2.18.0/mlr/tests/run-multilabel.R |only mlr-2.18.0/mlr/tests/run-parallel.R |only mlr-2.18.0/mlr/tests/run-regr.R |only mlr-2.18.0/mlr/tests/run-stack.R |only mlr-2.18.0/mlr/tests/run-surv.R |only mlr-2.18.0/mlr/tests/run-tune.R |only mlr-2.18.0/mlr/tests/testthat/test_surv_CoxBoost.R |only mlr-2.18.0/mlr/tests/testthat/test_surv_cv.CoxBoost.R |only mlr-2.19.0/mlr/DESCRIPTION | 34 mlr-2.19.0/mlr/MD5 | 813 +--- mlr-2.19.0/mlr/NAMESPACE | 6 mlr-2.19.0/mlr/NEWS.md | 12 mlr-2.19.0/mlr/R/FeatSelWrapper.R | 158 mlr-2.19.0/mlr/R/Filter.R | 31 mlr-2.19.0/mlr/R/Measure.R | 316 - mlr-2.19.0/mlr/R/Measure_custom_resampled.R | 154 mlr-2.19.0/mlr/R/ModelMultiplexer.R | 284 - mlr-2.19.0/mlr/R/RLearner_classif_bartMachine.R | 2 mlr-2.19.0/mlr/R/RLearner_classif_fdausc.knn.R | 116 mlr-2.19.0/mlr/R/RLearner_classif_glmnet.R | 196 mlr-2.19.0/mlr/R/RLearner_classif_mda.R | 98 mlr-2.19.0/mlr/R/RLearner_regr_glmnet.R | 162 mlr-2.19.0/mlr/R/RLearner_regr_mob.R | 136 mlr-2.19.0/mlr/R/RemoveConstantFeaturesWrapper.R | 13 mlr-2.19.0/mlr/R/ResampleResult_operators.R | 378 - mlr-2.19.0/mlr/R/StackedLearner.R | 1514 +++---- mlr-2.19.0/mlr/R/TuneControlIrace.R | 118 mlr-2.19.0/mlr/R/aggregations.R | 600 +- mlr-2.19.0/mlr/R/batchmark.R | 298 - mlr-2.19.0/mlr/R/cache_helpers.R | 2 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mlr-2.19.0/mlr/tests/testthat/test_classif_dcSVM.R | 11 mlr-2.19.0/mlr/tests/testthat/test_classif_earth.R | 1 mlr-2.19.0/mlr/tests/testthat/test_classif_evtree.R | 1 mlr-2.19.0/mlr/tests/testthat/test_classif_extraTrees.R | 1 mlr-2.19.0/mlr/tests/testthat/test_classif_fdausc.glm.R | 1 mlr-2.19.0/mlr/tests/testthat/test_classif_fdausc.kernel.R | 1 mlr-2.19.0/mlr/tests/testthat/test_classif_fdausc.knn.R | 1 mlr-2.19.0/mlr/tests/testthat/test_classif_fdausc.np.R | 1 mlr-2.19.0/mlr/tests/testthat/test_classif_featureless.R | 1 mlr-2.19.0/mlr/tests/testthat/test_classif_fgam.R | 3 mlr-2.19.0/mlr/tests/testthat/test_classif_fnn.R | 1 mlr-2.19.0/mlr/tests/testthat/test_classif_gamboost.R | 1 mlr-2.19.0/mlr/tests/testthat/test_classif_gaterSVM.R | 1 mlr-2.19.0/mlr/tests/testthat/test_classif_gausspr.R | 7 mlr-2.19.0/mlr/tests/testthat/test_classif_gbm.R | 11 mlr-2.19.0/mlr/tests/testthat/test_classif_geoDA.R | 3 mlr-2.19.0/mlr/tests/testthat/test_classif_glmboost.R | 1 mlr-2.19.0/mlr/tests/testthat/test_classif_glmnet.R | 1 mlr-2.19.0/mlr/tests/testthat/test_classif_h2odeeplearning.R | 6 mlr-2.19.0/mlr/tests/testthat/test_classif_h2ogbm.R | 7 mlr-2.19.0/mlr/tests/testthat/test_classif_h2oglm.R | 13 mlr-2.19.0/mlr/tests/testthat/test_classif_h2orandomForest.R | 15 mlr-2.19.0/mlr/tests/testthat/test_classif_kknn.R | 1 mlr-2.19.0/mlr/tests/testthat/test_classif_knn.R | 1 mlr-2.19.0/mlr/tests/testthat/test_classif_ksvm.R | 19 mlr-2.19.0/mlr/tests/testthat/test_classif_lda.R | 1 mlr-2.19.0/mlr/tests/testthat/test_classif_linDA.R | 1 mlr-2.19.0/mlr/tests/testthat/test_classif_logreg.R | 10 mlr-2.19.0/mlr/tests/testthat/test_classif_lssvm.R | 97 mlr-2.19.0/mlr/tests/testthat/test_classif_mda.R | 3 mlr-2.19.0/mlr/tests/testthat/test_classif_mlp.R | 1 mlr-2.19.0/mlr/tests/testthat/test_classif_multinom.R | 1 mlr-2.19.0/mlr/tests/testthat/test_classif_naiveBayes.R | 1 mlr-2.19.0/mlr/tests/testthat/test_classif_neuralnet.R | 12 mlr-2.19.0/mlr/tests/testthat/test_classif_nnTrain.R | 1 mlr-2.19.0/mlr/tests/testthat/test_classif_nnet.R | 93 mlr-2.19.0/mlr/tests/testthat/test_classif_nodeHarvest.R | 1 mlr-2.19.0/mlr/tests/testthat/test_classif_pamr.R | 1 mlr-2.19.0/mlr/tests/testthat/test_classif_penalized.R | 6 mlr-2.19.0/mlr/tests/testthat/test_classif_plr.R | 1 mlr-2.19.0/mlr/tests/testthat/test_classif_plsdaCaret.R | 143 mlr-2.19.0/mlr/tests/testthat/test_classif_probit.R | 1 mlr-2.19.0/mlr/tests/testthat/test_classif_qda.R | 1 mlr-2.19.0/mlr/tests/testthat/test_classif_quaDA.R | 1 mlr-2.19.0/mlr/tests/testthat/test_classif_rFerns.R | 1 mlr-2.19.0/mlr/tests/testthat/test_classif_randomForest.R | 3 mlr-2.19.0/mlr/tests/testthat/test_classif_randomForestSRC.R | 63 mlr-2.19.0/mlr/tests/testthat/test_classif_ranger.R | 1 mlr-2.19.0/mlr/tests/testthat/test_classif_rda.R | 1 mlr-2.19.0/mlr/tests/testthat/test_classif_rknn.R | 1 mlr-2.19.0/mlr/tests/testthat/test_classif_rotationForest.R | 1 mlr-2.19.0/mlr/tests/testthat/test_classif_rpart.R | 1 mlr-2.19.0/mlr/tests/testthat/test_classif_rrlda.R | 3 mlr-2.19.0/mlr/tests/testthat/test_classif_saeDNN.R | 41 mlr-2.19.0/mlr/tests/testthat/test_classif_sda.R | 1 mlr-2.19.0/mlr/tests/testthat/test_classif_sparseLDA.R | 3 mlr-2.19.0/mlr/tests/testthat/test_classif_svm.R | 1 mlr-2.19.0/mlr/tests/testthat/test_classif_xgboost.R | 1 mlr-2.19.0/mlr/tests/testthat/test_cluster_Cobweb.R | 1 mlr-2.19.0/mlr/tests/testthat/test_cluster_EM.R | 1 mlr-2.19.0/mlr/tests/testthat/test_cluster_FarthestFirst.R | 1 mlr-2.19.0/mlr/tests/testthat/test_cluster_MiniBatchKmeans.R | 1 mlr-2.19.0/mlr/tests/testthat/test_cluster_SimpleKMeans.R | 1 mlr-2.19.0/mlr/tests/testthat/test_cluster_XMeans.R | 55 mlr-2.19.0/mlr/tests/testthat/test_cluster_cmeans.R | 7 mlr-2.19.0/mlr/tests/testthat/test_cluster_dbscan.R | 1 mlr-2.19.0/mlr/tests/testthat/test_cluster_kkmeans.R | 1 mlr-2.19.0/mlr/tests/testthat/test_cluster_kmeans.R | 7 mlr-2.19.0/mlr/tests/testthat/test_featsel_FeatSelWrapper.R | 89 mlr-2.19.0/mlr/tests/testthat/test_featsel_FilterWrapper.R | 155 mlr-2.19.0/mlr/tests/testthat/test_featsel_analyzeFeatSelResult.R | 43 mlr-2.19.0/mlr/tests/testthat/test_featsel_filters.R | 357 - mlr-2.19.0/mlr/tests/testthat/test_featsel_fselectorrcpp.R | 59 mlr-2.19.0/mlr/tests/testthat/test_featsel_generateFilterValuesData.R | 386 - mlr-2.19.0/mlr/tests/testthat/test_featsel_plotFilterValues.R | 79 mlr-2.19.0/mlr/tests/testthat/test_featsel_praznik.R | 157 mlr-2.19.0/mlr/tests/testthat/test_featsel_rankSimpleFilters.R | 43 mlr-2.19.0/mlr/tests/testthat/test_featsel_selectFeatures.R | 209 - mlr-2.19.0/mlr/tests/testthat/test_featsel_selectFeaturesSequential.R | 39 mlr-2.19.0/mlr/tests/testthat/test_learners_all_classif.R | 35 mlr-2.19.0/mlr/tests/testthat/test_learners_all_clusters.R | 78 mlr-2.19.0/mlr/tests/testthat/test_learners_all_general.R | 1 mlr-2.19.0/mlr/tests/testthat/test_learners_all_multilabel.R | 1 mlr-2.19.0/mlr/tests/testthat/test_learners_all_regr.R | 181 mlr-2.19.0/mlr/tests/testthat/test_learners_all_surv.R | 12 mlr-2.19.0/mlr/tests/testthat/test_learners_classiflabelswitch.R | 187 mlr-2.19.0/mlr/tests/testthat/test_lint.R | 1 mlr-2.19.0/mlr/tests/testthat/test_multilabel_cforest.R | 1 mlr-2.19.0/mlr/tests/testthat/test_multilabel_randomForestSRC.R | 79 mlr-2.19.0/mlr/tests/testthat/test_parallel_mpi.R | 18 mlr-2.19.0/mlr/tests/testthat/test_regr_FDboost.R | 1 mlr-2.19.0/mlr/tests/testthat/test_regr_GPfit.R | 1 mlr-2.19.0/mlr/tests/testthat/test_regr_IBk.R | 1 mlr-2.19.0/mlr/tests/testthat/test_regr_LiblineaRL2L1SVR.R | 1 mlr-2.19.0/mlr/tests/testthat/test_regr_LiblineaRL2L2SVR.R | 1 mlr-2.19.0/mlr/tests/testthat/test_regr_RRF.R | 1 mlr-2.19.0/mlr/tests/testthat/test_regr_bartMachine.R | 1 mlr-2.19.0/mlr/tests/testthat/test_regr_bcart.R | 1 mlr-2.19.0/mlr/tests/testthat/test_regr_bgp.R | 10 mlr-2.19.0/mlr/tests/testthat/test_regr_bgpllm.R | 11 mlr-2.19.0/mlr/tests/testthat/test_regr_blm.R | 10 mlr-2.19.0/mlr/tests/testthat/test_regr_brnn.R | 1 mlr-2.19.0/mlr/tests/testthat/test_regr_bst.R | 1 mlr-2.19.0/mlr/tests/testthat/test_regr_btgp.R | 9 mlr-2.19.0/mlr/tests/testthat/test_regr_btgpllm.R | 3 mlr-2.19.0/mlr/tests/testthat/test_regr_btlm.R | 4 mlr-2.19.0/mlr/tests/testthat/test_regr_cforest.R | 1 mlr-2.19.0/mlr/tests/testthat/test_regr_crs.R | 1 mlr-2.19.0/mlr/tests/testthat/test_regr_ctree.R | 1 mlr-2.19.0/mlr/tests/testthat/test_regr_cubist.R | 1 mlr-2.19.0/mlr/tests/testthat/test_regr_cvglmnet.R | 1 mlr-2.19.0/mlr/tests/testthat/test_regr_earth.R | 1 mlr-2.19.0/mlr/tests/testthat/test_regr_evtree.R | 1 mlr-2.19.0/mlr/tests/testthat/test_regr_extraTrees.R | 1 mlr-2.19.0/mlr/tests/testthat/test_regr_featureless.R | 1 mlr-2.19.0/mlr/tests/testthat/test_regr_fgam.R | 9 mlr-2.19.0/mlr/tests/testthat/test_regr_fnn.R | 1 mlr-2.19.0/mlr/tests/testthat/test_regr_frbs.R | 1 mlr-2.19.0/mlr/tests/testthat/test_regr_gamboost.R | 1 mlr-2.19.0/mlr/tests/testthat/test_regr_gausspr.R | 1 mlr-2.19.0/mlr/tests/testthat/test_regr_gbm.R | 1 mlr-2.19.0/mlr/tests/testthat/test_regr_glm.R | 1 mlr-2.19.0/mlr/tests/testthat/test_regr_glmboost.R | 1 mlr-2.19.0/mlr/tests/testthat/test_regr_glmnet.R | 1 mlr-2.19.0/mlr/tests/testthat/test_regr_h2odeeplearning.R | 2 mlr-2.19.0/mlr/tests/testthat/test_regr_h2ogbm.R | 5 mlr-2.19.0/mlr/tests/testthat/test_regr_h2oglm.R | 3 mlr-2.19.0/mlr/tests/testthat/test_regr_h2orandomForest.R | 1 mlr-2.19.0/mlr/tests/testthat/test_regr_kknn.R | 1 mlr-2.19.0/mlr/tests/testthat/test_regr_km.R | 5 mlr-2.19.0/mlr/tests/testthat/test_regr_ksvm.R | 1 mlr-2.19.0/mlr/tests/testthat/test_regr_laGP.R | 1 mlr-2.19.0/mlr/tests/testthat/test_regr_lm.R | 1 mlr-2.19.0/mlr/tests/testthat/test_regr_mob.R | 1 mlr-2.19.0/mlr/tests/testthat/test_regr_nnet.R | 1 mlr-2.19.0/mlr/tests/testthat/test_regr_nodeHarvest.R | 1 mlr-2.19.0/mlr/tests/testthat/test_regr_penalized.R | 1 mlr-2.19.0/mlr/tests/testthat/test_regr_plsr.R | 1 mlr-2.19.0/mlr/tests/testthat/test_regr_randomForest.R | 3 mlr-2.19.0/mlr/tests/testthat/test_regr_randomForestSRC.R | 1 mlr-2.19.0/mlr/tests/testthat/test_regr_ranger.R | 1 mlr-2.19.0/mlr/tests/testthat/test_regr_rknn.R | 1 mlr-2.19.0/mlr/tests/testthat/test_regr_rpart.R | 1 mlr-2.19.0/mlr/tests/testthat/test_regr_rsm.R | 1 mlr-2.19.0/mlr/tests/testthat/test_regr_svm.R | 1 mlr-2.19.0/mlr/tests/testthat/test_regr_xgboost.R | 1 mlr-2.19.0/mlr/tests/testthat/test_stack.R | 1 mlr-2.19.0/mlr/tests/testthat/test_surv_cforest.R | 1 mlr-2.19.0/mlr/tests/testthat/test_surv_coxph.R | 1 mlr-2.19.0/mlr/tests/testthat/test_surv_cvglmnet.R | 1 mlr-2.19.0/mlr/tests/testthat/test_surv_gamboost.R | 1 mlr-2.19.0/mlr/tests/testthat/test_surv_gbm.R | 1 mlr-2.19.0/mlr/tests/testthat/test_surv_glmboost.R | 1 mlr-2.19.0/mlr/tests/testthat/test_surv_glmnet.R | 1 mlr-2.19.0/mlr/tests/testthat/test_surv_measures.R | 42 mlr-2.19.0/mlr/tests/testthat/test_surv_randomForestSRC.R | 1 mlr-2.19.0/mlr/tests/testthat/test_surv_ranger.R | 3 mlr-2.19.0/mlr/tests/testthat/test_surv_rpart.R | 1 mlr-2.19.0/mlr/tests/testthat/test_tuneParams.R | 144 mlr-2.19.0/mlr/tests/testthat/test_tune_ModelMultiplexer.R | 445 +- mlr-2.19.0/mlr/tests/testthat/test_tune_getTuneResultOptPath.R | 1 mlr-2.19.0/mlr/tests/testthat/test_tune_tuneCMAES.R | 1 mlr-2.19.0/mlr/tests/testthat/test_tune_tuneDesign.R | 1 mlr-2.19.0/mlr/tests/testthat/test_tune_tuneGenSA.R | 1 mlr-2.19.0/mlr/tests/testthat/test_tune_tuneGrid.R | 1 mlr-2.19.0/mlr/tests/testthat/test_tune_tuneIrace.R | 427 +- mlr-2.19.0/mlr/tests/testthat/test_tune_tuneMBO.R | 2 mlr-2.19.0/mlr/tests/testthat/test_tune_tuneParamsMultiCrit.R | 14 mlr-2.19.0/mlr/tests/testthat/test_tune_tuneRandom.R | 1 mlr-2.19.0/mlr/tests/testthat/test_tune_tuneThreshold.R | 94 420 files changed, 12957 insertions(+), 13033 deletions(-)
Title: Lipid Annotation for LC-MS/MS DDA or DIA Data
Description: Lipid annotation in untargeted liquid chromatography mass spectrometry lipidomics based on fragmentation rules. Alcoriza-Balaguer MI, Garcia-Canaveras JC, Lopez A, Conde I, Juan O, Carretero J, Lahoz A (2019) <doi:10.1021/acs.analchem.8b03409>.
Author: M Isabel Alcoriza-Balaguer, J Carlos Garcia-Canaveras
Maintainer: M Isabel Alcoriza-Balaguer <maribel_alcoriza@iislafe.es>
Diff between LipidMS versions 2.1.0 dated 2021-02-11 and 2.1.1 dated 2021-02-22
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- R/LipidMS.R | 2 +- R/internalProcessing.R | 22 +++++++++++----------- build/vignette.rds |binary inst/doc/Vignette.html | 10 ---------- 6 files changed, 20 insertions(+), 30 deletions(-)
Title: Basic Functions to Check Readability, Consistency, and Content
of an Individual Participant Data File
Description: Basic checks needed with an individual level participant data from randomised controlled trial. This
checks files for existence, read access and individual columns for formats. The checks on format is currently implemented for gender and age formats.
Author: Sheeja Manchira Krishnan
Maintainer: Sheeja Manchira Krishnan <sheejamk@gmail.com>
Diff between IPDFileCheck versions 0.6.5 dated 2021-02-16 and 0.6.6 dated 2021-02-22
DESCRIPTION | 6 +- MD5 | 18 +++---- R/IPDFilecheck.R | 49 ++++++++++++++++--- inst/doc/User_Guide.R | 4 - inst/doc/User_Guide.Rmd | 4 - inst/doc/User_Guide.html | 28 +++++------ man/calculate_age_from_dob.Rd | 13 ++++- man/calculate_age_from_year.Rd | 7 ++ tests/testthat/test-IPDFilecheck.R | 92 ++++++++++++++++++++++++++++--------- vignettes/User_Guide.Rmd | 4 - 10 files changed, 161 insertions(+), 64 deletions(-)
Title: Easy Access to Model Information for Various Model Objects
Description: A tool to provide an easy, intuitive and consistent
access to information contained in various R models, like model
formulas, model terms, information about random effects, data that was
used to fit the model or data from response variables. 'insight'
mainly revolves around two types of functions: Functions that find
(the names of) information, starting with 'find_', and functions that
get the underlying data, starting with 'get_'. The package has a
consistent syntax and works with many different model objects, where
otherwise functions to access these information are missing.
Author: Daniel Lüdecke [aut, cre] (<https://orcid.org/0000-0002-8895-3206>,
@strengejacke),
Dominique Makowski [aut, ctb] (<https://orcid.org/0000-0001-5375-9967>,
@Dom_Makowski),
Indrajeet Patil [aut, ctb] (<https://orcid.org/0000-0003-1995-6531>,
@patilindrajeets),
Philip Waggoner [aut, ctb] (<https://orcid.org/0000-0002-7825-7573>),
Mattan S. Ben-Shachar [aut, ctb]
(<https://orcid.org/0000-0002-4287-4801>)
Maintainer: Daniel Lüdecke <d.luedecke@uke.de>
Diff between insight versions 0.13.0 dated 2021-02-15 and 0.13.1 dated 2021-02-22
DESCRIPTION | 12 MD5 | 96 +- NAMESPACE | 6 NEWS.md | 29 R/compute_variances.R | 17 R/ellipsis_info.R | 2 R/find_statistic.R | 2 R/format_ci.R | 12 R/format_p.R | 3 R/get_deviance.R | 5 R/get_intercept.R | 5 R/get_loglikelihood.R | 111 +- R/get_residuals.R | 4 R/get_weights.R | 26 R/is_model.R | 19 R/is_model_supported.R | 2 R/model_name.R | 5 R/n_obs.R | 24 R/n_parameters.R | 69 + README.md | 85 - build/partial.rdb |binary build/vignette.rds |binary inst/doc/display.R | 17 inst/doc/display.Rmd | 27 inst/doc/display.html | 995 +++++++++++++++++++-- inst/doc/insight.html | 345 ++++--- man/format_ci.Rd | 115 +- man/format_p.Rd | 93 - man/format_rope.Rd | 50 - man/get_deviance.Rd | 5 man/get_intercept.Rd | 5 man/get_loglikelihood.Rd | 7 man/get_weights.Rd | 1 man/model_name.Rd | 5 man/n_parameters.Rd | 22 tests/testthat.R | 18 tests/testthat/test-MCMCglmm.R | 21 tests/testthat/test-clmm.R | 17 tests/testthat/test-feis.R | 22 tests/testthat/test-find_random.R | 17 tests/testthat/test-find_smooth.R | 17 tests/testthat/test-fixest.R | 17 tests/testthat/test-format.R | 4 tests/testthat/test-gamm4.R | 19 tests/testthat/test-get_deviance.R | 18 tests/testthat/test-get_loglikelihood.R | 39 tests/testthat/test-get_predicted.R | 23 tests/testthat/test-get_variance.R |only tests/testthat/test-n_parameters_rank-deficiency.R |only vignettes/display.Rmd | 27 50 files changed, 1852 insertions(+), 628 deletions(-)
Title: Tools to Visualize CM SAF NetCDF Data
Description: The Satellite Application Facility on Climate Monitoring (CM SAF)
is a ground segment of the European Organization for the Exploitation of
Meteorological Satellites (EUMETSAT) and one of EUMETSATs Satellite Application
Facilities. The CM SAF contributes to the sustainable monitoring of the climate
system by providing essential climate variables related to the energy and water
cycle of the atmosphere (<http://www.cmsaf.eu>). It is a joint cooperation of eight
National Meteorological and Hydrological Services.
The 'cmsafvis' R-package provides a collection of R-operators for the analysis and
visualization of CM SAF NetCDF data.
CM SAF climate data records are provided for free via (<https://wui.cmsaf.eu/safira>).
Detailed information and test data are provided on the CM SAF webpage
(<http://www.cmsaf.eu/R_toolbox>).
Author: Steffen Kothe [aut, cre]
Maintainer: Steffen Kothe <Steffen.Kothe@dwd.de>
Diff between cmsafvis versions 1.1.0 dated 2021-02-19 and 1.1.1 dated 2021-02-22
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- R/plot_abs_map.R | 5 +++++ R/plot_fieldmean.R | 5 +++++ R/plot_fieldmean_and_map.R | 5 +++++ R/set_time_locale.R | 10 +++++++++- build/partial.rdb |binary tests/testthat/test-set_time_locale.R | 2 ++ 8 files changed, 36 insertions(+), 11 deletions(-)
Title: Bayesian Inference of Non-Linear and Non-Gaussian State Space
Models
Description: Efficient methods for Bayesian inference of state space models
via particle Markov chain Monte Carlo (MCMC) and MCMC based on parallel
importance sampling type weighted estimators
(Vihola, Helske, and Franks, 2020, <doi:10.1111/sjos.12492>).
Gaussian, Poisson, binomial, negative binomial, and Gamma
observation densities and basic stochastic volatility models
with linear-Gaussian state dynamics,
as well as general non-linear Gaussian models and discretised
diffusion models are supported.
Author: Jouni Helske [aut, cre] (<https://orcid.org/0000-0001-7130-793X>),
Matti Vihola [aut] (<https://orcid.org/0000-0002-8041-7222>)
Maintainer: Jouni Helske <jouni.helske@iki.fi>
Diff between bssm versions 1.1.2 dated 2021-02-08 and 1.1.3-1 dated 2021-02-22
DESCRIPTION | 8 MD5 | 108 ++++---- NEWS | 11 R/bootstrap_filter.R | 5 R/bssm-package.R | 22 + R/ekpf_filter.R | 2 R/models.R | 36 ++ R/particle_smoother.R | 4 R/run_mcmc.R | 23 + build/vignette.rds |binary inst/CITATION | 16 - inst/doc/bssm.R | 15 - inst/doc/bssm.Rmd | 146 ++--------- inst/doc/bssm.html | 457 ++++------------------------------ inst/doc/growth_model.R | 29 +- inst/doc/growth_model.Rmd | 41 +-- inst/doc/growth_model.html | 166 +++++------- inst/doc/psi_pf.html | 54 +--- inst/doc/sde_model.R |only inst/doc/sde_model.Rmd |only inst/doc/sde_model.html |only man/bootstrap_filter.Rd | 5 man/drownings.Rd | 14 - man/ekpf_filter.Rd | 2 man/exchange.Rd | 8 man/particle_smoother.Rd | 4 man/poisson_series.Rd | 2 man/run_mcmc.ssm_nlg.Rd | 8 man/run_mcmc.ssm_sde.Rd | 9 man/run_mcmc_g.Rd | 2 man/run_mcmc_ng.Rd | 8 man/ssm_sde.Rd | 37 ++ src/R_bootstrap_filter.cpp | 170 ++++++++---- src/R_ekpf.cpp | 22 - src/R_loglik.cpp | 1 src/R_mcmc.cpp | 2 src/R_psi.cpp | 72 +++-- src/R_sde.cpp | 26 + src/R_sde_state_sampler.cpp | 33 +- src/approx_mcmc.cpp | 543 +++++++++++++++++++++++------------------ src/conditional_dist.cpp | 8 src/distr_consts.cpp | 24 + src/distr_consts.h | 3 src/dmvnorm.cpp | 118 +++++--- src/mcmc.cpp | 178 +++++++++++-- src/mcmc.h | 7 src/model_ssm_nlg.cpp | 8 src/model_ssm_nlg.h | 2 src/model_ssm_sde.cpp | 13 src/model_ssm_sde.h | 7 src/summary.cpp | 9 vignettes/bssm.Rmd | 146 ++--------- vignettes/bssm.bib | 29 +- vignettes/growth_model.Rmd | 41 +-- vignettes/sde_model.Rmd |only vignettes/ssm_nlg_template.cpp | 38 +- vignettes/ssm_sde_template.cpp | 26 - 57 files changed, 1330 insertions(+), 1438 deletions(-)
Title: Aligned Corpus Toolkit
Description: The Aligned Corpus Toolkit (act) is designed for linguists that work with time aligned transcription data. It offers functions to import and export various annotation file formats ('ELAN' .eaf, 'EXMARaLDA .exb and 'Praat' .TextGrid files), create print transcripts in the style of conversation analysis, search transcripts (span searches across multiple annotations, search in normalized annotations, make concordances etc.), export and re-import search results (.csv and 'Excel' .xlsx format), create cuts for the search results (print transcripts, audio/video cuts using 'FFmpeg' and video sub titles in 'Subrib title' .srt format), modify the data in a corpus (search/replace, delete, filter etc.), interact with 'Praat' using 'Praat'-scripts, and exchange data with the 'rPraat' package. The package is itself written in R and may be expanded by other users.
Author: Oliver Ehmer [aut, cre]
Maintainer: Oliver Ehmer <oliver.ehmer@romanistik.uni-freiburg.de>
Diff between act versions 1.0 dated 2021-01-08 and 1.0.1 dated 2021-02-22
act-1.0.1/act/DESCRIPTION | 8 act-1.0.1/act/MD5 | 91 +-- act-1.0.1/act/NAMESPACE | 3 act-1.0.1/act/R/act_info.R | 30 - act-1.0.1/act/R/act_options.R | 14 act-1.0.1/act/R/class_layout.R | 64 +- act-1.0.1/act/R/export_printtranscript.R | 33 + act-1.0.1/act/R/helper_tiers_sort_table.R | 11 act-1.0.1/act/R/media_getPathToExistingFile.R | 10 act-1.0.1/act/R/search_cuts_printtranscript.R | 251 ++++------ act-1.0.1/act/R/search_cuts_srt.R | 164 +++--- act-1.0.1/act/R/search_openresult_inelan.R |only act-1.0.1/act/R/search_openresult_inpraat.R | 53 -- act-1.0.1/act/R/search_openresult_inquicktime.R | 4 act-1.0.1/act/R/search_playresults_inquicktime.R | 4 act-1.0.1/act/R/search_searchandopen_inpraat.R |only act-1.0.1/act/R/tiers_add.R |only act-1.0.1/act/R/tiers_convert.R | 9 act-1.0.1/act/R/tiers_delete.R |only act-1.0.1/act/R/tiers_rename.R | 22 act-1.0.1/act/R/tiers_sort.R | 2 act-1.0.1/act/R/transcripts_delete.R | 2 act-1.0.1/act/inst/examples/media_getPathToExistingFile.R | 2 act-1.0.1/act/inst/examples/tiers_add.R |only act-1.0.1/act/inst/examples/tiers_delete.R |only act-1.0.1/act/inst/examples/tiers_rename.R | 6 act-1.0.1/act/man/export_printtranscript.Rd | 6 act-1.0.1/act/man/layout-class.Rd | 27 - act-1.0.1/act/man/media_getPathToExistingFile.Rd | 6 act-1.0.1/act/man/options_show.Rd | 1 act-1.0.1/act/man/search_cuts_printtranscript.Rd | 4 act-1.0.1/act/man/search_cuts_srt.Rd | 2 act-1.0.1/act/man/search_openresult_inelan.Rd |only act-1.0.1/act/man/search_openresult_inpraat.Rd | 8 act-1.0.1/act/man/search_openresult_inquicktime.Rd | 4 act-1.0.1/act/man/search_playresults_inquicktime.Rd | 4 act-1.0.1/act/man/search_searchandopen_inpraat.Rd | 2 act-1.0.1/act/man/tiers_add.Rd |only act-1.0.1/act/man/tiers_convert.Rd | 10 act-1.0.1/act/man/tiers_delete.Rd |only act-1.0.1/act/man/tiers_rename.Rd | 8 act-1.0.1/act/man/tiers_sort.Rd | 2 act-1.0/act/R/annotations_____________________.R |only act-1.0/act/R/class__________________________.R |only act-1.0/act/R/corpus_________________________.R |only act-1.0/act/R/helper__________________________.R |only act-1.0/act/R/matrix__________________________.R |only act-1.0/act/R/media__________________________.R |only act-1.0/act/R/search__________________________.R |only act-1.0/act/R/tiers____________________________.R |only act-1.0/act/R/transcript________________________.R |only act-1.0/act/inst/examples/annotations__EX_______________________.R |only act-1.0/act/inst/examples/class_________EX_______________________.R |only act-1.0/act/inst/examples/corpus_______EX________________________.R |only act-1.0/act/inst/examples/helper________EX________________________.R |only act-1.0/act/inst/examples/matrix________EX________________________.R |only act-1.0/act/inst/examples/media_________EX________________________.R |only act-1.0/act/inst/examples/search_________EX________________________.R |only act-1.0/act/inst/examples/tiers____________EX______________________.R |only act-1.0/act/inst/examples/transcript________EX______________________.R |only 60 files changed, 430 insertions(+), 437 deletions(-)
Title: Diversity Indices for Numerical Matrices
Description: Providing functions to calculate indices of diversity on numerical matrices based on information theory. The rationale behind the package is described in Rocchini, Marcantonio and Ricotta (2017) <doi:10.1016/j.ecolind.2016.07.039> and Rocchini, Marcantonio,..., Ricotta (2021) <doi:10.1101/2021.01.23.427872>.
Author: Matteo Marcantonio [aut, cre],
Martina Iannacito [aut, ctb],
Elisa Marchetto [ctb],
Elisa Thouverai [aut, ctb],
Daniele Da Re [aut],
Clara Tattoni [aut],
Giovanni Bacaro [aut],
Saverio Vicario [aut, ctb],
Carlo Ricotta [aut],
Duccio Rocchini [aut, ctb]
Maintainer: Matteo Marcantonio <marcantoniomatteo@gmail.com>
Diff between rasterdiv versions 0.2-2 dated 2020-11-17 and 0.2-3 dated 2021-02-22
rasterdiv-0.2-2/rasterdiv/inst/doc/rasterdiv_advanced_accRao.R |only rasterdiv-0.2-2/rasterdiv/inst/doc/rasterdiv_advanced_accRao.Rmd |only rasterdiv-0.2-2/rasterdiv/inst/doc/rasterdiv_advanced_accRao.html |only rasterdiv-0.2-2/rasterdiv/vignettes/rasterdiv_advanced_accRao.Rmd |only rasterdiv-0.2-3/rasterdiv/DESCRIPTION | 10 - rasterdiv-0.2-3/rasterdiv/MD5 | 54 ++---- rasterdiv-0.2-3/rasterdiv/NAMESPACE | 2 rasterdiv-0.2-3/rasterdiv/NEWS.md | 7 rasterdiv-0.2-3/rasterdiv/R/Rao.R | 9 - rasterdiv-0.2-3/rasterdiv/R/mpaRaoP.R | 7 rasterdiv-0.2-3/rasterdiv/R/mpaRaoS.R | 9 - rasterdiv-0.2-3/rasterdiv/R/paRaoP.R | 28 +-- rasterdiv-0.2-3/rasterdiv/R/paRaoS.R | 23 +- rasterdiv-0.2-3/rasterdiv/TODO |only rasterdiv-0.2-3/rasterdiv/build/vignette.rds |binary rasterdiv-0.2-3/rasterdiv/data/datalist |only rasterdiv-0.2-3/rasterdiv/inst/doc/rasterdiv_advanced_multimensionRao.Rmd | 1 rasterdiv-0.2-3/rasterdiv/inst/doc/rasterdiv_advanced_multimensionRao.html | 21 ++ rasterdiv-0.2-3/rasterdiv/inst/doc/rasterdiv_basics.Rmd | 1 rasterdiv-0.2-3/rasterdiv/inst/doc/rasterdiv_basics.html | 21 ++ rasterdiv-0.2-3/rasterdiv/man/BergerParker.Rd | 4 rasterdiv-0.2-3/rasterdiv/man/Hill.Rd | 4 rasterdiv-0.2-3/rasterdiv/man/HillS.Rd | 2 rasterdiv-0.2-3/rasterdiv/man/Pielou.Rd | 4 rasterdiv-0.2-3/rasterdiv/man/Rao.Rd | 88 +++++----- rasterdiv-0.2-3/rasterdiv/man/Renyi.Rd | 4 rasterdiv-0.2-3/rasterdiv/man/Shannon.Rd | 4 rasterdiv-0.2-3/rasterdiv/man/accRao.Rd | 2 rasterdiv-0.2-3/rasterdiv/tests/testthat/test_paRao.R | 9 - rasterdiv-0.2-3/rasterdiv/vignettes/rasterdiv_advanced_multimensionRao.Rmd | 1 rasterdiv-0.2-3/rasterdiv/vignettes/rasterdiv_basics.Rmd | 1 31 files changed, 189 insertions(+), 127 deletions(-)
Title: 'TD Ameritrade' API Interface for R
Description: Use R to interface with the 'TD Ameritrade' API <https://developer.tdameritrade.com/>.
Functions include authentication, trading, price requests, account information, and option
chains. A user will need a TD brokerage account and TD Ameritrade developer app. See README
for authentication process and examples.
Author: Anthony Balentine [aut, cre]
Maintainer: Anthony Balentine <exploringfinance1@gmail.com>
Diff between rameritrade versions 0.1.4 dated 2020-10-15 and 0.1.5 dated 2021-02-22
DESCRIPTION | 28 ++++++++++++++-------------- MD5 | 12 ++++++------ NEWS.md | 21 +++++++++++++++------ R/pricing.R | 5 +++++ R/utils.R | 12 ++++++------ README.md | 29 +++++++++++++++++------------ man/td_auth_accessToken.Rd | 2 +- 7 files changed, 64 insertions(+), 45 deletions(-)
Title: Permutation Tests for Time Series Data
Description: Helps you determine the analysis window to use when analyzing densely-sampled
time-series data, such as EEG data, using permutation testing (Maris & Oostenveld, 2007)
<doi:10.1016/j.jneumeth.2007.03.024>. These permutation tests can help identify the timepoints
where significance of an effect begins and ends, and the results can be plotted in various
types of heatmap for reporting. Mixed-effects models are supported using an implementation of
the approach by Lee & Braun (2012) <doi:10.1111/j.1541-0420.2011.01675.x>.
Author: Cesko C. Voeten [aut, cre]
Maintainer: Cesko C. Voeten <cvoeten@gmail.com>
Diff between permutes versions 1.0 dated 2019-07-21 and 2.0 dated 2021-02-22
permutes-1.0/permutes/R/permutes.R |only permutes-1.0/permutes/README.md |only permutes-1.0/permutes/data/datalist |only permutes-2.0/permutes/DESCRIPTION | 18 - permutes-2.0/permutes/MD5 | 46 ++- permutes-2.0/permutes/NAMESPACE | 11 permutes-2.0/permutes/R/buildmer.R |only permutes-2.0/permutes/R/data.R | 2 permutes-2.0/permutes/R/discoverability.R |only permutes-2.0/permutes/R/lmPerm.R |only permutes-2.0/permutes/R/pkgcheck.R |only permutes-2.0/permutes/R/plot.R |only permutes-2.0/permutes/build/vignette.rds |binary permutes-2.0/permutes/data/MMN.RData |binary permutes-2.0/permutes/inst/doc/buildmer.R |only permutes-2.0/permutes/inst/doc/buildmer.Rmd |only permutes-2.0/permutes/inst/doc/buildmer.pdf |only permutes-2.0/permutes/inst/doc/permutes.R | 235 ++++------------- permutes-2.0/permutes/inst/doc/permutes.Rmd | 305 +++-------------------- permutes-2.0/permutes/inst/doc/permutes.pdf |binary permutes-2.0/permutes/man/MMN.Rd | 8 permutes-2.0/permutes/man/clusterperm.glm.Rd |only permutes-2.0/permutes/man/clusterperm.glmer.Rd |only permutes-2.0/permutes/man/clusterperm.lm.Rd |only permutes-2.0/permutes/man/clusterperm.lmer.Rd |only permutes-2.0/permutes/man/perm.glm.Rd |only permutes-2.0/permutes/man/perm.glmer.Rd |only permutes-2.0/permutes/man/perm.lm.Rd |only permutes-2.0/permutes/man/perm.lmer.Rd |only permutes-2.0/permutes/man/permu.test.Rd | 54 ++-- permutes-2.0/permutes/man/plot.permutes.Rd | 23 + permutes-2.0/permutes/vignettes/bibliography.bib | 58 +--- permutes-2.0/permutes/vignettes/buildmer.Rmd |only permutes-2.0/permutes/vignettes/permutes.Rmd | 305 +++-------------------- 34 files changed, 267 insertions(+), 798 deletions(-)
Title: Connector Between 'mlr3' and 'OpenML'
Description: Provides an interface to 'OpenML.org' to list and
download machine learning data and tasks. Data and tasks can be
automatically converted to 'mlr3' tasks. For a more sophisticated
interface which also allows uploading experiments, see the 'OpenML'
package.
Author: Michel Lang [cre, aut] (<https://orcid.org/0000-0001-9754-0393>)
Maintainer: Michel Lang <michellang@gmail.com>
Diff between mlr3oml versions 0.4.1 dated 2021-01-27 and 0.4.2 dated 2021-02-22
mlr3oml-0.4.1/mlr3oml/tests/testthat/test_list_oml_data.R |only mlr3oml-0.4.2/mlr3oml/DESCRIPTION | 10 mlr3oml-0.4.2/mlr3oml/MD5 | 36 +-- mlr3oml-0.4.2/mlr3oml/NAMESPACE | 3 mlr3oml-0.4.2/mlr3oml/NEWS.md | 6 mlr3oml-0.4.2/mlr3oml/R/OMLData.R | 6 mlr3oml-0.4.2/mlr3oml/R/OMLTask.R | 6 mlr3oml-0.4.2/mlr3oml/R/helper_download.R | 110 +++++++--- mlr3oml-0.4.2/mlr3oml/R/helper_xml.R |only mlr3oml-0.4.2/mlr3oml/R/list_oml_data_sets.R | 31 -- mlr3oml-0.4.2/mlr3oml/R/list_oml_tasks.R | 28 -- mlr3oml-0.4.2/mlr3oml/R/status_codes.R |only mlr3oml-0.4.2/mlr3oml/R/zzz.R | 1 mlr3oml-0.4.2/mlr3oml/build/partial.rdb |binary mlr3oml-0.4.2/mlr3oml/man/list_oml_data_sets.Rd | 2 mlr3oml-0.4.2/mlr3oml/man/list_oml_tasks.Rd | 2 mlr3oml-0.4.2/mlr3oml/man/mlr3oml-package.Rd | 1 mlr3oml-0.4.2/mlr3oml/tests/testthat/test_OMLData.R | 2 mlr3oml-0.4.2/mlr3oml/tests/testthat/test_list_oml_data_sets.R |only mlr3oml-0.4.2/mlr3oml/tests/testthat/test_list_oml_task.R | 2 mlr3oml-0.4.2/mlr3oml/tests/testthat/test_manual.R | 6 21 files changed, 154 insertions(+), 98 deletions(-)
Title: R Access to the 'FMP Cloud' and 'Financial Modeling Prep' API
Description: Use R to access to the 'FMP Cloud' API <https://fmpcloud.io/> and
'Financial Modeling Prep' API <https://financialmodelingprep.com/developer/docs/>.
Data available includes stock prices, market indexes, company fundamentals,
13F holdings data, and much more. A valid API token must be set to enable
functions.
Author: Anthony Balentine [aut, cre]
Maintainer: Anthony Balentine <exploringfinance1@gmail.com>
Diff between fmpcloudr versions 0.1.3 dated 2021-02-05 and 0.1.4 dated 2021-02-22
DESCRIPTION | 20 ++++++++++---------- MD5 | 6 +++--- NEWS.md | 5 ++++- README.md | 6 +++--- 4 files changed, 20 insertions(+), 17 deletions(-)
Title: 'ETRADE' API Interface for R
Description: Use R to interface with the 'ETRADE' API <https://developer.etrade.com/home>.
Functions include authentication, trading, quote requests, account information, and option
chains. A user will need an ETRADE brokerage account and 'ETRADE' API approval. See README
for authentication process and examples.
Author: Anthony Balentine [aut, cre]
Maintainer: Anthony Balentine <exploringfinance1@gmail.com>
Diff between etrader versions 0.1.2 dated 2020-11-26 and 0.1.3 dated 2021-02-22
DESCRIPTION | 20 ++++++++++---------- MD5 | 10 +++++----- NEWS.md | 9 +++++++-- R/account.R | 5 ++++- README.md | 20 +++++++++----------- man/etrd_account_portfolio.Rd | 5 ++++- 6 files changed, 39 insertions(+), 30 deletions(-)
Title: Bindings to the 'HarfBuzz' and 'Fribidi' Libraries for Text
Shaping
Description: Provides access to the text shaping functionality in the 'HarfBuzz'
library and the bidirectional algorithm in the 'Fribidi' library.
'textshaping' is a low-level utility package mainly for graphic devices that
expands upon the font tool-set provided by the 'systemfonts' package.
Author: Thomas Lin Pedersen [cre, aut]
(<https://orcid.org/0000-0002-5147-4711>),
RStudio [cph]
Maintainer: Thomas Lin Pedersen <thomas.pedersen@rstudio.com>
Diff between textshaping versions 0.3.0 dated 2021-02-10 and 0.3.1 dated 2021-02-22
DESCRIPTION | 6 ++-- MD5 | 8 ++--- NEWS.md | 4 ++ inst/doc/c_interface.html | 63 ---------------------------------------------- src/string_metrics.cpp | 25 +++++++++++------- 5 files changed, 28 insertions(+), 78 deletions(-)
Title: Statistical Learning Based Estimation of Mutual Information
Description: The implementation of the algorithm for estimation of mutual information and channel capacity from experimental data by classification procedures (logistic regression). Technically, it allows to estimate information-theoretic measures between finite-state input and multivariate, continuous output. Method described in Jetka et al. (2019) <doi:10.1371/journal.pcbi.1007132>.
Author: Tomasz Jetka [aut, cre],
Karol Nienaltowski [ctb],
Michal Komorowski [ctb]
Maintainer: Tomasz Jetka <t.jetka@gmail.com>
Diff between SLEMI versions 1.0 dated 2019-10-07 and 1.0.1 dated 2021-02-22
DESCRIPTION | 15 MD5 | 100 +++--- NEWS.md |only R/SLEMI.R | 2 R/aux_deleteNA_df.R | 2 R/aux_theme_publ.R | 2 R/aux_x_log_y.R | 8 R/capacity_logreg_algorithm.R | 11 R/capacity_logreg_main.R | 18 - R/capacity_logreg_testing.R | 8 R/data.R | 10 R/func_formula_generator.R | 2 R/func_input_checks.R | 4 R/func_iterative_logreg_update.R | 44 ++ R/func_sampling_functions.R | 18 - R/func_signal_transform.R | 2 R/mi_logreg_algorithm.R | 4 R/mi_logreg_main.R | 12 R/mi_logreg_testing.R | 10 R/output_graphs_single.R | 6 R/prob_discr_pairwise.R | 11 README.md |only build/vignette.rds |binary inst/doc/vignette.R | 28 - inst/doc/vignette.Rmd | 20 - inst/doc/vignette.html | 564 +++++++++++++--------------------- man/SLEMI.Rd | 3 man/aux_deleteNA_df.Rd | 2 man/aux_theme_publ.Rd | 2 man/aux_x_log_y.Rd | 2 man/capacity_logreg_algorithm.Rd | 24 - man/capacity_logreg_main.Rd | 49 +- man/capacity_logreg_testing.Rd | 30 + man/capacity_output_graph_boxplots.Rd | 32 + man/data_example1.Rd | 12 man/data_example2.Rd | 8 man/data_nfkb.Rd | 8 man/func_formula_generator.Rd | 9 man/func_input_checks.Rd | 4 man/func_iterative_logreg_update.Rd | 4 man/func_signal_transform.Rd | 2 man/mi_logreg_algorithm.Rd | 18 - man/mi_logreg_main.Rd | 44 +- man/mi_logreg_testing.Rd | 32 + man/output_graphs_main.Rd | 12 man/prob_discr_pairwise.Rd | 27 - man/sampling_bootstrap.Rd | 6 tests |only vignettes/vignette.Rmd | 20 - 49 files changed, 648 insertions(+), 603 deletions(-)
Title: Correspondence Analysis Variants
Description: Provides six variants of two-way correspondence analysis (ca):
simple ca, singly ordered ca, doubly ordered ca, non symmetrical ca,
singly ordered non symmetrical ca, and doubly ordered non symmetrical
ca.
Author: Rosaria Lombardo and Eric J Beh
Maintainer: Rosaria Lombardo <rosaria.lombardo@unicampania.it>
Diff between CAvariants versions 5.5 dated 2020-04-01 and 5.6 dated 2021-02-22
CAvariants-5.5/CAvariants/data/asbestos.rda |only CAvariants-5.5/CAvariants/data/shopdataM.rda |only CAvariants-5.6/CAvariants/DESCRIPTION | 8 - CAvariants-5.6/CAvariants/MD5 | 20 ++-- CAvariants-5.6/CAvariants/R/CAvariants.R | 115 ++++++++++++++--------- CAvariants-5.6/CAvariants/R/plot.CAvariants.R | 22 +++- CAvariants-5.6/CAvariants/R/print.CAvariants.R | 26 +++-- CAvariants-5.6/CAvariants/R/summary.CAvariants.R | 4 CAvariants-5.6/CAvariants/R/vcaellipse.R | 106 ++------------------- CAvariants-5.6/CAvariants/data/asbestos.R |only CAvariants-5.6/CAvariants/data/shopdataM.R |only CAvariants-5.6/CAvariants/man/CAvariants.Rd | 3 CAvariants-5.6/CAvariants/man/vcaellipse.Rd | 31 ++---- 13 files changed, 145 insertions(+), 190 deletions(-)
More information about stencilaschema at CRAN
Permanent link
Title: Handle Error and Warning Messages
Description: Elegantly handle error and warning messages.
Author: John Coene [aut, cre],
Opifex [cph]
Maintainer: John Coene <john@opifex.org>
Diff between erratum versions 2.0.0 dated 2020-12-21 and 2.1.0 dated 2021-02-22
erratum-2.0.0/erratum/R/enforce.R |only erratum-2.0.0/erratum/man/enforces.Rd |only erratum-2.0.0/erratum/tests/testthat/test_enforce.R |only erratum-2.1.0/erratum/DESCRIPTION | 9 +- erratum-2.1.0/erratum/MD5 | 55 +++++++++-------- erratum-2.1.0/erratum/NAMESPACE | 5 + erratum-2.1.0/erratum/NEWS.md | 10 +++ erratum-2.1.0/erratum/R/error.R | 9 ++ erratum-2.1.0/erratum/R/is.R | 12 +++ erratum-2.1.0/erratum/R/issue.R | 57 ++++++++++++++---- erratum-2.1.0/erratum/R/jab.R | 6 + erratum-2.1.0/erratum/R/latch.R | 4 - erratum-2.1.0/erratum/R/parse.R | 31 +++++++-- erratum-2.1.0/erratum/R/resolve.R |only erratum-2.1.0/erratum/R/skip.R | 2 erratum-2.1.0/erratum/R/template.R | 52 +++++++++++++++- erratum-2.1.0/erratum/R/warning.R | 9 ++ erratum-2.1.0/erratum/README.md | 8 ++ erratum-2.1.0/erratum/man/Error.Rd | 27 +++++++- erratum-2.1.0/erratum/man/Issue.Rd | 17 +++++ erratum-2.1.0/erratum/man/Warning.Rd | 27 +++++++- erratum-2.1.0/erratum/man/check_tmpl.Rd |only erratum-2.1.0/erratum/man/checks.Rd | 15 ++++ erratum-2.1.0/erratum/man/chk.Rd | 2 erratum-2.1.0/erratum/man/latch.Rd | 4 - erratum-2.1.0/erratum/man/raise.Rd |only erratum-2.1.0/erratum/man/resolves.Rd |only erratum-2.1.0/erratum/man/tmpl.Rd |only erratum-2.1.0/erratum/tests/testthat/_snaps/raiser.md |only erratum-2.1.0/erratum/tests/testthat/test_basics.R | 5 + erratum-2.1.0/erratum/tests/testthat/test_is.R | 6 - erratum-2.1.0/erratum/tests/testthat/test_jab.R | 12 +++ erratum-2.1.0/erratum/tests/testthat/test_latch.R | 4 - 33 files changed, 321 insertions(+), 67 deletions(-)
Title: Calculate TL-Moments and Convert Them to Distribution Parameters
Description: Calculates empirical TL-moments (trimmed L-moments) of arbitrary
order and trimming, and converts them to distribution parameters.
Author: Jona Lilienthal
Maintainer: Jona Lilienthal <lilienthal@statistik.tu-dortmund.de>
Diff between TLMoments versions 0.7.5 dated 2019-12-04 and 0.7.5.1 dated 2021-02-22
DESCRIPTION | 10 MD5 | 10 R/sysdata.rda |binary build/vignette.rds |binary inst/doc/comparison_of_computation_time.html | 410 +++++++++++++--------- inst/doc/short_introduction.html | 488 +++++++++++++++------------ 6 files changed, 535 insertions(+), 383 deletions(-)
Title: Seawater Carbonate Chemistry
Description: Calculates parameters of the seawater carbonate system and assists the design of ocean acidification perturbation experiments.
Author: Jean-Pierre Gattuso [aut, cre, cph],
Jean-Marie Epitalon [aut],
Heloise Lavigne [aut],
James Orr [aut],
Bernard Gentili [ctb],
Mathilde Hagens [ctb],
Andreas Hofmann [ctb],
Jens-Daniel Mueller [ctb],
Aurélien Proye [ctb],
James Rae [ctb],
Karline Soetaert [ctb]
Maintainer: Jean-Pierre Gattuso <gattuso@obs-vlfr.fr>
Diff between seacarb versions 3.2.15 dated 2021-01-20 and 3.2.16 dated 2021-02-22
ChangeLog | 4 ++++ DESCRIPTION | 8 ++++---- MD5 | 52 ++++++++++++++++++++++++++-------------------------- R/K1.R | 3 ++- R/K2.R | 45 +++++++++++++++++++++++++++++++++------------ man/K1.Rd | 18 +++++++++++------- man/K2.Rd | 17 ++++++++++++----- man/Om.Rd | 13 ++++++++----- man/SIR.Rd | 7 ++++++- man/SIR_b.Rd | 15 ++++++++++----- man/SIR_full.Rd | 6 +++++- man/buffer.Rd | 20 +++++++++++++------- man/buffergen.Rd | 14 ++++++++------ man/buffesm.Rd | 36 ++++++++++++++++++++---------------- man/carb.Rd | 18 +++++++++++------- man/carbb.Rd | 17 ++++++++++------- man/carbfull.Rd | 16 ++++++++++------ man/derivnum.Rd | 4 +++- man/errors.Rd | 4 +++- man/oa.Rd | 24 ++++++++++++++---------- man/pCa.Rd | 18 ++++++++++-------- man/pHinsi.Rd | 16 +++++++++------- man/pTA.Rd | 18 ++++++++++-------- man/pgas.Rd | 18 ++++++++++-------- man/pmix.Rd | 18 ++++++++++-------- man/ppH.Rd | 18 ++++++++++-------- man/psi.Rd | 16 +++++++++------- 27 files changed, 281 insertions(+), 182 deletions(-)
Title: Pedigree, Genetic Merit and Phenotype Simulation
Description: Simulate pedigree, genetic merits and phenotypes with (non)random mating followed by (non)random selection with different patterns in males and females.
Bijma, P. & Rutten, M. (2002) <https://www.wur.nl/en/Research-Results/Chair-groups/Animal-Sciences/Animal-Breeding-and-Genomics-Group/Research/Software.htm>.
Author: Mohammad Ali Nilforooshan [aut, cre]
(<https://orcid.org/0000-0003-0339-5442>)
Maintainer: Mohammad Ali Nilforooshan <m.a.nilforooshan@gmail.com>
Diff between pedSimulate versions 0.1.1 dated 2021-01-07 and 0.1.2 dated 2021-02-22
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS.md | 5 +++++ R/simulatePed.R | 4 ++-- 4 files changed, 13 insertions(+), 8 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-02-10 2.0.1
2021-02-05 2.0.0
2019-10-25 0.3-7
2019-03-26 0.3-5
2018-06-30 0.3-4
2018-05-17 0.3-3
2017-01-09 0.3-1
2016-01-03 0.3-0
2014-10-27 0.2-8
2014-02-07 0.2-6
2013-07-18 0.2-4
2012-09-13 0.2-0
2011-04-08 0.0-6
2010-05-16 0.0-4
2010-05-11 0.0-3
2010-03-18 0.0-2
2010-02-11 0.0-1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-09-11 0.3.8
2018-07-16 0.3.7
2018-04-24 0.3.6.1
2018-03-13 0.3.6
2018-02-07 0.3.5.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-02-03 0.6.0
2018-04-25 0.5.1
2018-01-26 0.3.0
2017-06-10 0.1.0