Title: Computation and Visualization of Package Download Counts and
Percentiles
Description: Compute and visualize the cross-sectional and longitudinal number
and rank percentile of package downloads from RStudio's CRAN mirror.
Author: Peter Li [aut, cre]
Maintainer: Peter Li <lindbrook@gmail.com>
Diff between packageRank versions 0.3.5 dated 2020-05-08 and 0.4.0 dated 2021-03-01
packageRank-0.3.5/packageRank/R/packageInfo.R |only packageRank-0.3.5/packageRank/man/fetchLog.Rd |only packageRank-0.3.5/packageRank/man/figures/README-unnamed-chunk-10-1.png |only packageRank-0.3.5/packageRank/man/figures/README-unnamed-chunk-4-1.png |only packageRank-0.3.5/packageRank/man/figures/README-unnamed-chunk-5-1.png |only packageRank-0.3.5/packageRank/man/figures/README-unnamed-chunk-6-1.png |only packageRank-0.3.5/packageRank/man/figures/README-unnamed-chunk-7-1.png |only packageRank-0.3.5/packageRank/man/figures/README-unnamed-chunk-8-1.png |only packageRank-0.3.5/packageRank/man/figures/README-unnamed-chunk-9-1.png |only packageRank-0.3.5/packageRank/man/fixDate_2012.Rd |only packageRank-0.3.5/packageRank/man/packageHistory0.Rd |only packageRank-0.3.5/packageRank/man/packageInfo.Rd |only packageRank-0.3.5/packageRank/man/populationPlot.Rd |only packageRank-0.3.5/packageRank/man/resolveDate.Rd |only packageRank-0.3.5/packageRank/man/validatePackage.Rd |only 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Title: Normalizing Transformation Functions
Description: Estimate a suite of normalizing transformations, including
a new adaptation of a technique based on ranks which can guarantee
normally distributed transformed data if there are no ties: ordered
quantile normalization (ORQ). ORQ normalization combines a rank-mapping
approach with a shifted logit approximation that allows
the transformation to work on data outside the original domain. It is
also able to handle new data within the original domain via linear
interpolation. The package is built to estimate the best normalizing
transformation for a vector consistently and accurately. It implements
the Box-Cox transformation, the Yeo-Johnson transformation, three types
of Lambert WxF transformations, and the ordered quantile normalization
transformation. It estimates the normalization efficacy of other
commonly used transformations, and it allows users to specify
custom transformations or normalization statistics. Finally, functionality
can be integrated into a machine learning workflow via recipes.
Author: Ryan Andrew Peterson [aut, cre]
Maintainer: Ryan Andrew Peterson <ryan.a.peterson@cuanschutz.edu>
Diff between bestNormalize versions 1.6.1 dated 2020-06-08 and 1.7.0 dated 2021-03-01
bestNormalize-1.6.1/bestNormalize/R/step_bestNormalize.R |only bestNormalize-1.6.1/bestNormalize/man/step_bestNormalize.Rd |only bestNormalize-1.7.0/bestNormalize/DESCRIPTION | 22 bestNormalize-1.7.0/bestNormalize/MD5 | 86 - bestNormalize-1.7.0/bestNormalize/NAMESPACE | 18 bestNormalize-1.7.0/bestNormalize/NEWS.md | 12 bestNormalize-1.7.0/bestNormalize/R/bestNormalize.R | 77 + bestNormalize-1.7.0/bestNormalize/R/binarize.R | 4 bestNormalize-1.7.0/bestNormalize/R/lambert.R | 5 bestNormalize-1.7.0/bestNormalize/R/no_transform.R | 66 + bestNormalize-1.7.0/bestNormalize/R/orderNorm.R | 22 bestNormalize-1.7.0/bestNormalize/R/plots.R | 12 bestNormalize-1.7.0/bestNormalize/R/step_best_normalize.R |only bestNormalize-1.7.0/bestNormalize/R/step_orderNorm.R | 13 bestNormalize-1.7.0/bestNormalize/R/yeojohnson.R | 2 bestNormalize-1.7.0/bestNormalize/build/vignette.rds |binary bestNormalize-1.7.0/bestNormalize/inst/doc/bestNormalize.R | 29 bestNormalize-1.7.0/bestNormalize/inst/doc/bestNormalize.Rmd | 43 bestNormalize-1.7.0/bestNormalize/inst/doc/bestNormalize.html | 478 +++++----- bestNormalize-1.7.0/bestNormalize/inst/doc/customization.R | 2 bestNormalize-1.7.0/bestNormalize/inst/doc/customization.Rmd | 2 bestNormalize-1.7.0/bestNormalize/inst/doc/customization.html | 252 ++--- bestNormalize-1.7.0/bestNormalize/man/bestNormalize.Rd | 24 bestNormalize-1.7.0/bestNormalize/man/lambert.Rd | 4 bestNormalize-1.7.0/bestNormalize/man/no_transform.Rd | 14 bestNormalize-1.7.0/bestNormalize/man/step_best_normalize.Rd |only bestNormalize-1.7.0/bestNormalize/man/step_orderNorm.Rd | 6 bestNormalize-1.7.0/bestNormalize/tests/testthat-minor-transforms.R | 2 bestNormalize-1.7.0/bestNormalize/tests/testthat/test_arcsinh_x.R | 4 bestNormalize-1.7.0/bestNormalize/tests/testthat/test_bestNormalize.R | 136 +- bestNormalize-1.7.0/bestNormalize/tests/testthat/test_bn_custom_normstat.R | 76 - bestNormalize-1.7.0/bestNormalize/tests/testthat/test_bn_parallel.R | 29 bestNormalize-1.7.0/bestNormalize/tests/testthat/test_boxcox.R | 2 bestNormalize-1.7.0/bestNormalize/tests/testthat/test_custom_fn.R | 70 - bestNormalize-1.7.0/bestNormalize/tests/testthat/test_exp_x.R | 2 bestNormalize-1.7.0/bestNormalize/tests/testthat/test_lambert.R | 8 bestNormalize-1.7.0/bestNormalize/tests/testthat/test_log_x.R | 4 bestNormalize-1.7.0/bestNormalize/tests/testthat/test_no_transform.R | 33 bestNormalize-1.7.0/bestNormalize/tests/testthat/test_orderNorm.R | 2 bestNormalize-1.7.0/bestNormalize/tests/testthat/test_plot_methods.R | 2 bestNormalize-1.7.0/bestNormalize/tests/testthat/test_print_methods.R | 2 bestNormalize-1.7.0/bestNormalize/tests/testthat/test_sqrt_x.R | 4 bestNormalize-1.7.0/bestNormalize/tests/testthat/test_step_fns.R | 66 - bestNormalize-1.7.0/bestNormalize/tests/testthat/test_yeojohnson.R | 4 bestNormalize-1.7.0/bestNormalize/vignettes/bestNormalize.Rmd | 43 bestNormalize-1.7.0/bestNormalize/vignettes/customization.Rmd | 2 46 files changed, 1032 insertions(+), 652 deletions(-)
Title: Automatic Structural Time Series Models
Description: Automatic model selection for structural time series decomposition into trend, cycle, and seasonal components using the Kalman filter.
See Koopman, Siem Jan and Marius Ooms (2012) "Forecasting Economic Time Series Using Unobserved Components Time Series Models <doi:10.1093/oxfordhb/9780195398649.013.0006>.
Author: Alex Hubbard
Maintainer: Alex Hubbard <hubbard.alex@gmail.com>
Diff between autostsm versions 1.2 dated 2021-02-05 and 1.2.1 dated 2021-03-01
DESCRIPTION | 6 ++--- MD5 | 23 ++++++++++++-------- R/stsm_data_checks.R |only R/stsm_detect_anomalies.R | 25 +++++---------------- R/stsm_detect_breaks.R | 25 +++++---------------- R/stsm_estimate.R | 25 +++++---------------- R/stsm_forecast.R | 46 +++++++++++++--------------------------- inst/doc/autostsm_vignette.R | 1 inst/doc/autostsm_vignette.Rmd | 1 inst/doc/autostsm_vignette.html | 31 +++++++++++++------------- man/stsm_check_exo.Rd |only man/stsm_check_exo_fc.Rd |only man/stsm_check_y.Rd |only man/stsm_format_exo.Rd |only vignettes/autostsm_vignette.Rmd | 1 15 files changed, 69 insertions(+), 115 deletions(-)
Title: Sparklyr Extension for 'Flint'
Description: This sparklyr extension makes 'Flint' time series
library functionalities (<https://github.com/twosigma/flint>) easily
accessible through R.
Author: Yitao Li [aut, cre] (<https://orcid.org/0000-0002-1261-905X>)
Maintainer: Yitao Li <yitao@rstudio.com>
Diff between sparklyr.flint versions 0.2.0 dated 2020-09-25 and 0.2.1 dated 2021-03-01
DESCRIPTION | 33 ++++++++------- MD5 | 12 ++--- R/init.R | 7 ++- build/vignette.rds |binary inst/doc/importing-time-series-data.html | 34 ++++++++++----- inst/doc/overview.html | 10 ++++ inst/doc/working-with-time-series-rdd.html | 62 ++++++++++++++++------------- 7 files changed, 97 insertions(+), 61 deletions(-)
More information about sparklyr.flint at CRAN
Permanent link
Title: Moments of Folded and Doubly Truncated Multivariate
Distributions
Description: It computes arbitrary products moments (mean vector and variance-covariance matrix), for some double truncated (and folded) multivariate distributions. These distributions belong to the family of selection elliptical distributions, which includes well known skewed distributions as the unified skew-t distribution (SUT) and its particular cases as the extended skew-t (EST), skew-t (ST) and the symmetric student-t (T) distribution. Analogous normal cases unified skew-normal (SUN), extended skew-normal (ESN), skew-normal (SN), and symmetric normal (N) are also included. Density, probabilities and random deviates are also offered for these members.
References used for this package:
Arellano-Valle, R. B. & Genton, M. G. (2005). On fundamental skew distributions. Journal of Multivariate Analysis, 96, 93-116.
Galarza C.E., Matos L.A., Dey D.K. & Lachos V.H. (2019) On Moments of Folded and Truncated Multivariate Extended Skew-Normal Distributions. Technical report. ID 19-14. University of Connecticut. <https://stat.uconn.edu/tech-reports-2019/>.
Author: Christian E. Galarza, Raymond Kan and Victor H. Lachos
Maintainer: Christian E. Galarza <cgalarza88@gmail.com>
Diff between MomTrunc versions 5.91 dated 2020-11-05 and 5.97 dated 2021-03-01
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/TT_mv_Lin.R | 7 ------- build/partial.rdb |binary src/my_functions.cpp | 4 ++-- 5 files changed, 10 insertions(+), 17 deletions(-)
Title: Rhythmic Patterns Modeling by FMM Models
Description: Provides a collection of functions to fit and explore single, multi-component and restricted Frequency Modulated Moebius (FMM) models. 'FMM' is a nonlinear parametric regression model capable of fitting non-sinusoidal shapes in rhythmic patterns. Details about the mathematical formulation of 'FMM' models can be found in Rueda et al. (2019) <doi:10.1038/s41598-019-54569-1>.
Author: Adrian Lamela, Itziar Fernandez, Yolanda Larriba, Alejandro Rodriguez, Cristina Rueda
Maintainer: Itziar Fernandez <itziar.fernandez@uva.es>
Diff between FMM versions 0.1.1 dated 2021-01-22 and 0.1.2 dated 2021-03-01
FMM-0.1.1/FMM/R/FMMPeaks.R |only FMM-0.1.1/FMM/R/generate_FMM.R |only FMM-0.1.1/FMM/man/FMMPeaks.Rd |only FMM-0.1.1/FMM/man/generate_FMM.Rd |only FMM-0.1.2/FMM/DESCRIPTION | 6 +-- FMM-0.1.2/FMM/MD5 | 44 ++++++++++++++-------------- FMM-0.1.2/FMM/NEWS.md | 16 ---------- FMM-0.1.2/FMM/R/Class.R | 4 +- FMM-0.1.2/FMM/R/FMM-methods.R | 42 ++++++++++++++++++++++++++- FMM-0.1.2/FMM/R/FMM_internal.R | 2 - FMM-0.1.2/FMM/R/fitFMM.R | 2 - FMM-0.1.2/FMM/R/fitFMM_back.R | 18 +++++++++-- FMM-0.1.2/FMM/R/fitFMM_restr.R | 51 +++++++++++++++++++++++++-------- FMM-0.1.2/FMM/R/fitFMM_unit.R | 3 + FMM-0.1.2/FMM/R/generateFMM.R |only FMM-0.1.2/FMM/R/getFMMPeaks.R |only FMM-0.1.2/FMM/R/neuronalAPTrain-data.R | 4 +- FMM-0.1.2/FMM/data/neuronalAPTrain.rda |binary FMM-0.1.2/FMM/man/Class.Rd | 3 + FMM-0.1.2/FMM/man/FMM-getS4.Rd | 2 + FMM-0.1.2/FMM/man/FMM-methods.Rd | 9 +++-- FMM-0.1.2/FMM/man/extractWaves.Rd | 5 +-- FMM-0.1.2/FMM/man/fitFMM.Rd | 10 ++++-- FMM-0.1.2/FMM/man/generateFMM.Rd |only FMM-0.1.2/FMM/man/getFMMPeaks.Rd |only FMM-0.1.2/FMM/man/neuronalAPTrain.Rd | 6 +-- FMM-0.1.2/FMM/man/plotFMM.Rd | 13 +------- 27 files changed, 157 insertions(+), 83 deletions(-)
Title: Perform Inference on Algorithm-Agnostic Variable Importance
Description: Calculate point estimates of and valid confidence intervals for
nonparametric, algorithm-agnostic variable importance measures in high and low dimensions,
using flexible estimators of the underlying regression functions. For more information
about the methods, please see Williamson et al. (Biometrics, 2020), Williamson et al. (arXiv, 2020+) <arXiv:2004.03683>, and Williamson and Feng (ICML, 2020).
Author: Brian D. Williamson [aut, cre]
(<https://orcid.org/0000-0002-7024-548X>),
Jean Feng [ctb],
Noah Simon [ths] (<https://orcid.org/0000-0002-8985-2474>),
Marco Carone [ths] (<https://orcid.org/0000-0003-2106-0953>)
Maintainer: Brian D. Williamson <bwillia2@fredhutch.org>
Diff between vimp versions 2.1.6 dated 2021-01-08 and 2.1.9 dated 2021-03-01
DESCRIPTION | 8 - MD5 | 104 ++++++------- NEWS.md | 31 +++ R/cv_vim.R | 269 +++++++++++++++++++++++++++------- R/est_predictiveness.R | 77 +++++++-- R/est_predictiveness_cv.R | 144 ++++++++++++++---- R/measure_accuracy.R | 72 ++++++--- R/measure_anova.R | 81 +++++++--- R/measure_auc.R | 138 ++++++++++++----- R/measure_cross_entropy.R | 72 ++++++--- R/measure_deviance.R | 104 ++++++++++--- R/measure_mse.R | 66 ++++++-- R/measure_r_squared.R | 94 +++++++++-- R/sp_vim.R | 199 +++++++++++++++++++------ R/spvim_ics.R | 9 - R/spvim_se.R | 20 +- R/utils.R | 72 +++++++-- R/vim.R | 189 ++++++++++++++++++----- R/vimp-package.R | 19 +- R/vimp_accuracy.R | 76 +++++++-- R/vimp_anova.R | 78 +++++++-- R/vimp_auc.R | 75 +++++++-- R/vimp_deviance.R | 75 +++++++-- R/vimp_regression.R | 80 +++++++--- R/vimp_rsquared.R | 76 +++++++-- R/vimp_se.R | 33 ++-- build/partial.rdb |binary inst/doc/introduction-to-vimp.html | 44 ++--- inst/doc/precomputed-regressions.html | 34 ++-- inst/doc/types-of-vims.html | 32 ++-- man/cv_vim.Rd | 87 +++++++--- man/est_predictiveness.Rd | 47 ++++- man/est_predictiveness_cv.Rd | 47 ++++- man/measure_accuracy.Rd | 44 ++++- man/measure_anova.Rd | 44 ++++- man/measure_auc.Rd | 45 ++++- man/measure_cross_entropy.Rd | 41 ++++- man/measure_deviance.Rd | 45 ++++- man/measure_mse.Rd | 44 ++++- man/measure_r_squared.Rd | 53 ++++-- man/sp_vim.Rd | 73 ++++++--- man/spvim_se.Rd | 11 + man/vim.Rd | 113 +++++++++----- man/vimp.Rd | 19 +- man/vimp_accuracy.Rd | 74 ++++++--- man/vimp_anova.Rd | 77 ++++++--- man/vimp_auc.Rd | 74 ++++++--- man/vimp_deviance.Rd | 74 ++++++--- man/vimp_regression.Rd | 76 ++++++--- man/vimp_rsquared.Rd | 76 ++++++--- man/vimp_se.Rd | 17 +- tests/testthat/test-binary_outcomes.R | 29 +++ tests/testthat/test-cv_vim.R | 2 53 files changed, 2641 insertions(+), 942 deletions(-)
Title: A Swiss-Army Knife for Data I/O
Description: Streamlined data import and export by making assumptions that
the user is probably willing to make: 'import()' and 'export()' determine
the data structure from the file extension, reasonable defaults are used for
data import and export (e.g., 'stringsAsFactors=FALSE'), web-based import is
natively supported (including from SSL/HTTPS), compressed files can be read
directly without explicit decompression, and fast import packages are used where
appropriate. An additional convenience function, 'convert()', provides a simple
method for converting between file types.
Author: Jason Becker [ctb],
Chung-hong Chan [aut],
Geoffrey CH Chan [ctb],
Thomas J. Leeper [aut, cre] (<https://orcid.org/0000-0003-4097-6326>),
Christopher Gandrud [ctb],
Andrew MacDonald [ctb],
Ista Zahn [ctb],
Stanislaus Stadlmann [ctb],
Ruaridh Williamson [ctb],
Patrick Kennedy [ctb],
Ryan Price [ctb],
Trevor L Davis [ctb],
Nathan Day [ctb],
Bill Denney [ctb] (<https://orcid.org/0000-0002-5759-428X>),
Alex Bokov [ctb] (<https://orcid.org/0000-0002-0511-9815>)
Maintainer: Thomas J. Leeper <thosjleeper@gmail.com>
Diff between rio versions 0.5.16 dated 2018-11-26 and 0.5.26 dated 2021-03-01
DESCRIPTION | 34 MD5 | 126 +- NAMESPACE | 9 NEWS.md | 377 +++++--- R/arg_reconcile.R |only R/characterize.R | 39 R/convert.R | 83 - R/export.R | 29 R/export_list.R |only R/export_methods.R | 50 - R/extensions.R | 12 R/gather_attrs.R | 4 R/import.R | 17 R/import_list.R | 48 - R/import_methods.R | 252 +++-- R/is_file_text.R |only R/rio.R | 2 R/standardize_attributes.R | 20 R/utils.R | 4 README.md | 31 build/vignette.rds |binary inst/doc/rio.R | 29 inst/doc/rio.html | 1486 +++++++++++++++++++++++++++++++++-- inst/examples/iris.xls |only man/arg_reconcile.Rd |only man/characterize.Rd | 116 +- man/convert.Rd | 107 +- man/export.Rd | 249 +++-- man/export_list.Rd |only man/extensions.Rd | 82 - man/gather_attrs.Rd | 66 - man/import.Rd | 219 ++--- man/import_list.Rd | 127 +- man/install_formats.Rd | 34 man/is_file_text.Rd |only man/rio.Rd | 73 - po/R-rio.pot | 86 +- tests/testthat/files |only tests/testthat/test_arg_reconcile.R |only tests/testthat/test_characterize.R | 14 tests/testthat/test_errors.R | 1 tests/testthat/test_export_list.R |only tests/testthat/test_format_R.R | 3 tests/testthat/test_format_csv.R | 10 tests/testthat/test_format_dbf.R | 6 tests/testthat/test_format_dta.R | 28 tests/testthat/test_format_eviews.R | 9 tests/testthat/test_format_feather.R | 18 tests/testthat/test_format_fst.R | 18 tests/testthat/test_format_fwf.R | 1 tests/testthat/test_format_html.R | 21 tests/testthat/test_format_json.R | 10 tests/testthat/test_format_matlab.R | 20 tests/testthat/test_format_ods.R | 13 tests/testthat/test_format_parquet.R |only tests/testthat/test_format_pzfx.R |only tests/testthat/test_format_rdata.R | 10 tests/testthat/test_format_rds.R | 3 tests/testthat/test_format_sav.R | 62 + tests/testthat/test_format_syd.R | 1 tests/testthat/test_format_xls.R | 17 tests/testthat/test_format_xml.R | 13 tests/testthat/test_format_yml.R | 4 tests/testthat/test_gather_attrs.R | 16 tests/testthat/test_identical.R | 39 tests/testthat/test_import_list.R | 35 tests/testthat/test_is_file_text.R |only tests/testthat/test_remote.R | 77 + vignettes/rio.Rmd | 14 69 files changed, 3128 insertions(+), 1146 deletions(-)
Title: RJ Clustering Algorithm
Description: Clustering algorithm for high dimensional data. This algorithm is ideal for data where n << p.
Author: Rachael Shudde [aut, cre],
Shahina Rahman [aut],
Valen Johnson [aut]
Maintainer: Rachael Shudde <rachael.shudde@gmail.com>
Diff between RJcluster versions 0.1.0 dated 2020-09-23 and 0.1.1 dated 2021-03-01
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/AlgorithmImplementation.R | 23 +++++++++++++---------- inst/doc/RJclust_Vignette.pdf |binary 4 files changed, 20 insertions(+), 17 deletions(-)
Title: Datasets to Align Financial Markets with Climate Goals
Description: These datasets support the implementation in R of
the software 'PACTA' (Paris Agreement Capital Transition Assessment),
which is a free tool that calculates the alignment between financial
assets and climate scenarios (<https://2degrees-investing.org/>).
Financial institutions use 'PACTA' to study how their capital
allocation impacts the climate. Because both financial institutions
and market data providers keep their data private, this package
provides fake, public data to enable the development and use of
'PACTA' in R.
Author: Mauro Lepore [aut, cre, ctr] (<https://orcid.org/0000-0002-1986-7988>),
Jackson Hoffart [aut, dtc] (<https://orcid.org/0000-0002-8600-5042>),
Klaus Hagedorn [aut],
2 Degrees Investing Initiative [cph, fnd]
Maintainer: Mauro Lepore <maurolepore@gmail.com>
Diff between r2dii.data versions 0.1.8 dated 2021-02-22 and 0.1.9 dated 2021-03-01
DESCRIPTION | 6 ++--- MD5 | 27 ++++++++++++------------ NEWS.md | 5 ++++ README.md | 18 ++++++++-------- data/cnb_classification.rda |binary data/gics_classification.rda |binary data/isic_classification.rda |binary data/nace_classification.rda |binary data/naics_classification.rda |binary data/psic_classification.rda |binary data/sector_classifications.rda |binary data/sic_classification.rda |binary tests/testthat/_snaps/sector_classifications.md | 2 - tests/testthat/test-psic_classification.R |only tests/testthat/test-sector_classifications.R | 6 ++--- 15 files changed, 35 insertions(+), 29 deletions(-)
Title: Variable Table for Variable Documentation
Description: Automatically generates HTML variable documentation including variable names, labels, classes, value labels (if applicable), value ranges, and summary statistics. See the vignette "vtable" for a package overview.
Author: Nick Huntington-Klein [aut, cre]
Maintainer: Nick Huntington-Klein <nhuntington-klein@seattleu.edu>
Diff between vtable versions 1.2.6 dated 2020-10-13 and 1.2.7 dated 2021-03-01
DESCRIPTION | 6 LICENSE | 2 MD5 | 32 ++--- R/dftotable.R | 13 +- R/labeltable.R | 6 R/sumtable.R | 9 + R/vtable.R | 7 - build/vignette.rds |binary inst/doc/dftotable.html | 23 +++ inst/doc/labeltable.html | 251 +++++++++++++++++++++++++++++++++++++++- inst/doc/sumtable.html | 58 ++++++++- inst/doc/vtable.html | 14 +- inst/doc/vtablefunction.html | 267 ++++++++++++++++++++++++++++++++++++++++--- inst/doc/vtablehelpers.html | 29 +++- man/labeltable.Rd | 2 man/sumtable.Rd | 2 man/vtable.Rd | 2 17 files changed, 655 insertions(+), 68 deletions(-)
Title: Simplify Parameters
Description: An interface to simplify organizing parameters used in a package,
using external configuration files. This attempts to provide a cleaner
alternative to options().
Author: Sahil Seth [aut, cre],
Yihui Xie [ctb] (kable from knitr R/table.R)
Maintainer: Sahil Seth <me@sahilseth.com>
Diff between params versions 0.6.1 dated 2016-04-18 and 0.7.3 dated 2021-03-01
params-0.6.1/params/R/conf.R |only params-0.6.1/params/R/fix-names.R |only params-0.6.1/params/R/pkg-opts.R |only params-0.6.1/params/R/read-sheet.R |only params-0.6.1/params/R/write-sheet.R |only params-0.6.1/params/tests/testthat/params.R |only params-0.7.3/params/DESCRIPTION | 15 +- params-0.7.3/params/MD5 | 48 ++++--- params-0.7.3/params/NAMESPACE | 6 params-0.7.3/params/NEWS.md | 14 ++ params-0.7.3/params/R/check_args.R | 2 params-0.7.3/params/R/fix_column_names.R |only params-0.7.3/params/R/kable.R | 2 params-0.7.3/params/R/load_opts.R |only params-0.7.3/params/R/load_toml.R |only params-0.7.3/params/R/new_opts.R |only params-0.7.3/params/R/opts.R | 111 +++++++++++------- params-0.7.3/params/R/read_sheet.R |only params-0.7.3/params/R/write_sheet.R |only params-0.7.3/params/README.md | 7 - params-0.7.3/params/inst/conf/build.R | 8 - params-0.7.3/params/inst/extdata/example.conf |only params-0.7.3/params/man/check_args.Rd | 3 params-0.7.3/params/man/fix_column_names.Rd |only params-0.7.3/params/man/fix_names.Rd | 5 params-0.7.3/params/man/kable.Rd | 16 +- params-0.7.3/params/man/opts.Rd | 5 params-0.7.3/params/man/params.Rd | 34 +++-- params-0.7.3/params/man/parse_opts.Rd | 3 params-0.7.3/params/man/read_sheet.Rd | 34 +++-- params-0.7.3/params/man/vignettes |only params-0.7.3/params/tests/testthat/test_read_sheet.R |only params-0.7.3/params/tests/testthat/test_write_sheet.R |only 33 files changed, 195 insertions(+), 118 deletions(-)
Title: Isolation-Based Outlier Detection
Description: Fast and multi-threaded implementation of
isolation forest (Liu, Ting, Zhou (2008) <doi:10.1109/ICDM.2008.17>),
extended isolation forest (Hariri, Kind, Brunner (2018) <arXiv:1811.02141>),
SCiForest (Liu, Ting, Zhou (2010) <doi:10.1007/978-3-642-15883-4_18>),
and fair-cut forest (Cortes (2019) <arXiv:1911.06646>),
for isolation-based outlier detection, clustered outlier detection, distance or similarity
approximation (Cortes (2019) <arXiv:1910.12362>),
and imputation of missing values (Cortes (2019) <arXiv:1911.06646>),
based on random or guided decision tree splitting. Provides simple heuristics for fitting the model to
categorical columns and handling missing data, and offers options for varying between random and guided
splits, and for using different splitting criteria.
Author: David Cortes
Maintainer: David Cortes <david.cortes.rivera@gmail.com>
Diff between isotree versions 0.1.28 dated 2021-01-13 and 0.2.7 dated 2021-03-01
isotree-0.1.28/isotree/src/crit.cpp |only isotree-0.1.28/isotree/src/dealloc.cpp |only isotree-0.1.28/isotree/src/dist.cpp |only isotree-0.1.28/isotree/src/extended.cpp |only isotree-0.1.28/isotree/src/fit_model.cpp |only isotree-0.1.28/isotree/src/helpers_iforest.cpp |only isotree-0.1.28/isotree/src/impute.cpp |only isotree-0.1.28/isotree/src/isoforest.cpp |only isotree-0.1.28/isotree/src/mult.cpp |only isotree-0.1.28/isotree/src/predict.cpp |only isotree-0.1.28/isotree/src/utils.cpp |only isotree-0.2.7/isotree/DESCRIPTION | 8 isotree-0.2.7/isotree/MD5 | 61 - isotree-0.2.7/isotree/R/RcppExports.R | 52 + isotree-0.2.7/isotree/R/helpers.R | 595 +++++++++++++++--- isotree-0.2.7/isotree/R/isoforest.R | 321 ++++++--- isotree-0.2.7/isotree/man/append.trees.Rd | 4 isotree-0.2.7/isotree/man/export.isotree.model.Rd | 12 isotree-0.2.7/isotree/man/isolation.forest.Rd | 190 ++++- isotree-0.2.7/isotree/man/isotree.to.sql.Rd | 2 isotree-0.2.7/isotree/man/load.isotree.model.Rd | 5 isotree-0.2.7/isotree/man/predict.isolation_forest.Rd | 42 - isotree-0.2.7/isotree/man/unpack.isolation.forest.Rd | 8 isotree-0.2.7/isotree/src/RcppExports.cpp | 182 +++++ isotree-0.2.7/isotree/src/Rwrapper.cpp | 532 +++++++++++++++- isotree-0.2.7/isotree/src/crit.h |only isotree-0.2.7/isotree/src/dist.h |only isotree-0.2.7/isotree/src/extended.h |only isotree-0.2.7/isotree/src/external_facing_generic.h |only isotree-0.2.7/isotree/src/fit_model.h |only isotree-0.2.7/isotree/src/helpers_iforest.h |only isotree-0.2.7/isotree/src/impute.h |only isotree-0.2.7/isotree/src/instantiate_model.cpp |only isotree-0.2.7/isotree/src/instantiate_model.h |only isotree-0.2.7/isotree/src/isoforest.h |only isotree-0.2.7/isotree/src/isotree.h | 469 ++++++++++---- isotree-0.2.7/isotree/src/isotree_exportable.h |only isotree-0.2.7/isotree/src/merge_models.cpp | 2 isotree-0.2.7/isotree/src/model_joined.h |only isotree-0.2.7/isotree/src/mult.h |only isotree-0.2.7/isotree/src/other_helpers.h |only isotree-0.2.7/isotree/src/predict.h |only isotree-0.2.7/isotree/src/serialize.cpp | 2 isotree-0.2.7/isotree/src/sql.cpp | 2 isotree-0.2.7/isotree/src/utils.h |only 45 files changed, 2054 insertions(+), 435 deletions(-)
Title: Cache 'CRAN'-Like Metadata and R Packages
Description: Metadata and package cache for CRAN-like repositories.
This is a utility package to be used by package management tools
that want to take advantage of caching.
Author: Gábor Csárdi [aut, cre]
Maintainer: Gábor Csárdi <csardi.gabor@gmail.com>
Diff between pkgcache versions 1.1.1 dated 2020-10-11 and 1.2.0 dated 2021-03-01
DESCRIPTION | 17 - MD5 | 77 +++--- NAMESPACE | 12 + NEWS.md | 16 + R/aaa-async.R | 334 +++++++++++++++++++-------- R/archive.R |only R/assertions.R | 6 R/bioc.R | 4 R/iso-date.R |only R/metadata-cache.R | 19 + R/onload.R | 348 ++++++++++++++++++++++++++++- R/packages-gz.R | 6 R/parse-url.R |only R/platform.R | 62 ++++- R/progress-bar.R | 6 R/repo-set.R |only R/repo-status.R | 1 R/utils.R | 10 README.md | 18 - man/bioc_version.Rd | 54 ++++ man/cran_archive_cache.Rd |only man/cran_archive_list.Rd |only man/pkgcache-package.Rd | 105 ++++---- man/repo_get.Rd |only man/repo_status.Rd | 5 tests/async/setup-httpbin.R | 4 tests/async/test-call-function.R | 3 tests/async/test-cancel-early.R | 4 tests/async/test-debug.R | 22 - tests/async/test-deferred-pieces.R | 31 -- tests/async/test-deferred.R | 25 ++ tests/async/test-external-process.R |only tests/async/test-http.R | 20 - tests/async/test-process.R | 3 tests/async/test-shared.R | 13 - tests/async/test-synchronise.R | 2 tests/async/test-when-all.R | 12 + tests/testthat/_snaps |only tests/testthat/fixtures/dplyr.json.gz |only tests/testthat/fixtures/r-versions.json |only tests/testthat/fixtures/rspm-versions.json |only tests/testthat/setup-httpbin.R | 36 ++- tests/testthat/test-4-async-http.R | 4 tests/testthat/test-assertions.R | 5 tests/testthat/test-packages-gz.R | 5 tests/testthat/test-repo-set.R |only 46 files changed, 976 insertions(+), 313 deletions(-)
Title: R Access to the 'FMP Cloud' and 'Financial Modeling Prep' API
Description: Use R to access to the 'FMP Cloud' API <https://fmpcloud.io/> and
'Financial Modeling Prep' API <https://financialmodelingprep.com/developer/docs/>.
Data available includes stock prices, market indexes, company fundamentals,
13F holdings data, and much more. A valid API token must be set to enable
functions.
Author: Anthony Balentine [aut, cre]
Maintainer: Anthony Balentine <exploringfinance1@gmail.com>
Diff between fmpcloudr versions 0.1.4 dated 2021-02-22 and 0.1.5 dated 2021-03-01
DESCRIPTION | 6 +++--- MD5 | 24 ++++++++++++++---------- NAMESPACE | 2 ++ NEWS.md | 5 ++++- R/other.R |only R/setup.R | 6 ++++-- README.md | 2 +- man/fmpc_cots_data.Rd |only man/fmpc_cots_symbols.Rd |only man/fmpc_get_url.Rd | 5 ++++- tests/testthat/test-holdings.R | 2 +- tests/testthat/test-other.R |only tests/testthat/test-pricing.R | 4 ++-- tests/testthat/test-secDetails.R | 1 + tests/testthat/test-securityMetrics.R | 29 +++++++++++++++-------------- 15 files changed, 51 insertions(+), 35 deletions(-)
Title: Collective Matrix Factorization for Recommender Systems
Description: Collective matrix factorization (a.k.a. multi-view or multi-way factorization,
Singh, Gordon, (2008) <doi:10.1145/1401890.1401969>) tries to approximate a matrix 'X' as the
product of two low-dimensional matrices aided with secondary information matrices about rows
and/or columns of 'X' which are also factorized using the same latent components.
The intended usage is for recommender systems, dimensionality reduction, and missing value imputation.
Implements extensions of the original model (Cortes, (2018) <arXiv:1809.00366>) and can produce
different factorizations such as the weighted 'implicit-feedback' model (Hu, Koren, Volinsky,
(2008) <doi:10.1109/ICDM.2008.22>), the 'weighted-lambda-regularization' model,
(Zhou, Wilkinson, Schreiber, Pan, (2008) <doi:10.1007/978-3-540-68880-8_32>),
or the enhanced model with 'implicit features' (Rendle, Zhang,
Koren, (2019) <arXiv:1905.01395>), with or without side information. Can use gradient-based
procedures or alternating-least squares procedures (Koren, Bell, Volinsky, (2009)
<doi:10.1109/MC.2009.263>), with either a Cholesky solver, a faster conjugate gradient solver
(Takacs, Pilaszy, Tikk, (2011) <doi:10.1145/2043932.2043987>), or a non-negative
coordinate descent solver (Franc, Hlavac, Navara, (2005) <doi:10.1007/11556121_50>),
providing efficient methods for sparse and dense data, and mixtures thereof.
Supports L1 and L2 regularization in the main models,
offers alternative most-popular and content-based models, and implements functionality
for cold-start recommendations and imputation of 2D data.
Author: David Cortes [aut, cre, cph], Jorge Nocedal [cph], Naoaki Okazaki [cph]
Maintainer: David Cortes <david.cortes.rivera@gmail.com>
Diff between cmfrec versions 2.4.2 dated 2021-01-10 and 2.4.5 dated 2021-03-01
DESCRIPTION | 10 +- MD5 | 37 ++++---- NAMESPACE | 1 R/fit.R | 81 +++++++++++-------- R/helpers.R | 1 R/impute.R | 2 R/items.R | 5 + R/methods.R | 5 + R/other.R | 67 ++++++++++++++++ R/predict.R | 2 R/predict_new.R | 3 R/topN.R | 2 man/drop.nonessential.matrices.Rd |only man/fit.Rd | 67 +++++++++------- src/Rwrapper.c | 58 ++++++++++--- src/arithmetic_ansi.h | 8 - src/cmfrec.h | 23 +++-- src/collective.c | 159 +++++++++++++++++++++++++++++++------- src/helpers.c | 30 +++++-- src/offsets.c | 82 +++++++++++++------ 20 files changed, 468 insertions(+), 175 deletions(-)
Title: Softball Run Expectancy using Markov Chains and Simulation
Description: Implements two methods of estimating runs scored in a softball
scenario: (1) theoretical expectation using discrete Markov chains and (2) empirical
distribution using multinomial random simulation. Scores are based on player-specific input
probabilities (out, single, double, triple, walk, and homerun). Optional inputs include probability
of attempting a steal, probability of succeeding in an attempted steal, and an indicator of whether
a player is "fast" (e.g. the player could stretch home). These probabilities may be
calculated from common player statistics that are publicly available on team's webpages.
Scores are evaluated based on a nine-player lineup and may be used to compare lineups,
evaluate base scenarios, and compare the offensive potential of individual players.
Manuscript forthcoming. See Bukiet & Harold (1997) <doi:10.1287/opre.45.1.14> for
implementation of discrete Markov chains.
Author: Annie Sauer [aut, cre],
Sierra Merkes [aut]
Maintainer: Annie Sauer <anniees@vt.edu>
Diff between runexp versions 0.1.0 dated 2021-02-15 and 0.2.0 dated 2021-03-01
DESCRIPTION | 9 +++++---- MD5 | 14 ++++++++------ NAMESPACE | 2 +- R/markov.R | 7 +++---- R/runexp-package.R | 3 ++- R/scrape.R |only README | 7 +++++++ man/runexp-package.Rd | 3 ++- man/scrape.Rd |only 9 files changed, 28 insertions(+), 17 deletions(-)
Title: Correct Bias in DNA Methylation Analyses
Description: Implementation of the algorithms (with minor
modifications) to correct bias in quantitative DNA methylation
analyses as described by Moskalev et al. (2011)
<doi:10.1093/nar/gkr213>.
Author: Lorenz A. Kapsner [cre, aut, cph]
(<https://orcid.org/0000-0003-1866-860X>),
Evgeny A. Moskalev [aut]
Maintainer: Lorenz A. Kapsner <lorenz.kapsner@gmail.com>
Diff between rBiasCorrection versions 0.2.6 dated 2021-02-13 and 0.2.7 dated 2021-03-01
DESCRIPTION | 6 MD5 | 128 +- NAMESPACE | 42 R/aggregated_input.R | 242 ++-- R/better_model.R | 256 ++--- R/biascorrection.R | 1166 ++++++++++++------------ R/calibration_plot.R | 268 ++--- R/clean_dt.R | 456 ++++----- R/create_agg_df.R | 158 +-- R/create_exampleplot.R | 5 R/create_plots.R | 198 ++-- R/createbarerrorplots.R | 672 ++++++------- R/cubic.R | 400 ++++---- R/helper-table_prep.R | 16 R/hyperbolic.R | 604 ++++++------ R/plotting_utility.R | 394 ++++---- R/regression_utility.R | 9 R/solving_equations.R | 992 ++++++++++---------- R/statistics_list.R | 432 ++++---- R/utils.R | 538 +++++------ README.md | 178 +-- build/partial.rdb |binary inst/doc/rBiasCorrection_benchmarking.Rmd | 150 +-- inst/doc/rBiasCorrection_benchmarking.html | 4 inst/doc/rBiasCorrection_howto.Rmd | 372 +++---- inst/doc/rBiasCorrection_howto.html | 12 inst/template_calibration.csv | 2 inst/template_experimental.csv | 2 man/aggregated_input.Rd | 110 +- man/better_model.Rd | 192 +-- man/biascorrection.Rd | 278 ++--- man/calibration_plot.Rd | 64 - man/clean_dt.Rd | 86 - man/clean_up.Rd | 66 - man/create_exampleplot.Rd | 124 +- man/createbarerrorplots.Rd | 332 +++--- man/example._plot.df_agg.Rd | 24 man/example._plot_coef_c.Rd | 24 man/example._plot_coef_h.Rd | 24 man/example.data_calibration.Rd | 24 man/example.data_experimental.Rd | 24 man/get_timestamp.Rd | 46 man/handle_text_input.Rd | 50 - man/on_start.Rd | 86 - man/plotting_utility.Rd | 262 ++--- man/regression_utility.Rd | 172 +-- man/solving_equations.Rd | 230 ++-- man/statistics_list.Rd | 134 +- man/substitutions_create.Rd | 44 man/write_csv.Rd | 62 - man/write_log.Rd | 58 - tests/testthat/test-algorithm_minmax_FALSE.R | 716 +++++++------- tests/testthat/test-algorithm_minmax_FALSE_re.R | 404 ++++---- tests/testthat/test-algorithm_minmax_TRUE.R | 684 +++++++------- tests/testthat/test-biascorrection.R | 78 - tests/testthat/test-clean_dt.R | 348 +++---- tests/testthat/test-create_aggregated.R | 106 +- tests/testthat/test-hyperbolic.R | 76 - tests/testthat/test-lints.R | 34 tests/testthat/test-plotting.R | 490 +++++----- tests/testthat/test-utils.R | 52 - tests/testthat/testdata/cal_type_1.csv | 80 - tests/testthat/testdata/exp_type_1.csv | 70 - vignettes/rBiasCorrection_benchmarking.Rmd | 150 +-- vignettes/rBiasCorrection_howto.Rmd | 372 +++---- 65 files changed, 6946 insertions(+), 6932 deletions(-)
More information about rBiasCorrection at CRAN
Permanent link
Title: Dynamic Mixed-Membership Network Regression Model
Description: Stochastic collapsed variational inference on mixed-membership stochastic blockmodel for networks,
incorporating node-level predictors of mixed-membership vectors, as well as
dyad-level predictors. For networks observed over time, the model defines a hidden
Markov process that allows the effects of node-level predictors to evolve in discrete,
historical periods. In addition, the package offers a variety of utilities for
exploring results of estimation, including tools for conducting posterior
predictive checks of goodness-of-fit and several plotting functions. The package
implements methods described in Olivella, Pratt and Imai (2019) 'Dynamic Stochastic
Blockmodel Regression for Social Networks: Application to International Conflicts',
available at <https://www.santiagoolivella.info/pdfs/socnet.pdf>.
Author: Santiago Olivella [aut, cre],
Adeline Lo [aut, cre],
Tyler Pratt [aut, cre],
Kosuke Imai [aut, cre]
Maintainer: Santiago Olivella <olivella@unc.edu>
Diff between NetMix versions 0.1.5 dated 2020-01-14 and 0.2.0 dated 2021-03-01
NetMix-0.1.5/NetMix/build |only NetMix-0.1.5/NetMix/man/NetMix-package.Rd |only NetMix-0.2.0/NetMix/DESCRIPTION | 25 - NetMix-0.2.0/NetMix/MD5 | 76 +-- NetMix-0.2.0/NetMix/NAMESPACE | 6 NetMix-0.2.0/NetMix/NEWS | 13 NetMix-0.2.0/NetMix/R/RcppExports.R | 19 NetMix-0.2.0/NetMix/R/auxfuns.R | 256 ++++++++++- NetMix-0.2.0/NetMix/R/coef.mmsbm.R | 1 NetMix-0.2.0/NetMix/R/covFX.R | 5 NetMix-0.2.0/NetMix/R/gof.mmsbm.R | 10 NetMix-0.2.0/NetMix/R/head.mmsbm.R | 1 NetMix-0.2.0/NetMix/R/mmsbm.R | 520 ++++++++++-------------- NetMix-0.2.0/NetMix/R/plot.mmsbm.R | 90 +++- NetMix-0.2.0/NetMix/R/predict.mmsbm.R | 32 - NetMix-0.2.0/NetMix/R/simulate.mmsbm.R | 44 +- NetMix-0.2.0/NetMix/R/summary.mmsbm.R | 1 NetMix-0.2.0/NetMix/R/vcov.mmsbm.R | 1 NetMix-0.2.0/NetMix/README.md | 2 NetMix-0.2.0/NetMix/man/auxfuns.Rd | 88 ++-- NetMix-0.2.0/NetMix/man/coef.mmsbm.Rd | 1 NetMix-0.2.0/NetMix/man/covFX.Rd | 1 NetMix-0.2.0/NetMix/man/gof.Rd | 8 NetMix-0.2.0/NetMix/man/head.mmsbm.Rd | 1 NetMix-0.2.0/NetMix/man/lazega_dyadic.Rd | 6 NetMix-0.2.0/NetMix/man/lazega_monadic.Rd | 6 NetMix-0.2.0/NetMix/man/mmsbm.Rd | 61 +- NetMix-0.2.0/NetMix/man/mmsbm_fit.Rd | 2 NetMix-0.2.0/NetMix/man/plot.mmsbm.Rd | 5 NetMix-0.2.0/NetMix/man/predict.mmsbm.Rd | 10 NetMix-0.2.0/NetMix/man/simulate.mmsbm.Rd | 6 NetMix-0.2.0/NetMix/man/summary.mmsbm.Rd | 1 NetMix-0.2.0/NetMix/man/vcov.mmsbm.Rd | 1 NetMix-0.2.0/NetMix/src/AuxFuns.cpp | 1 NetMix-0.2.0/NetMix/src/AuxFunsForR.cpp | 75 +++ NetMix-0.2.0/NetMix/src/MMModelClass.cpp | 642 +++++++++++++++++++++--------- NetMix-0.2.0/NetMix/src/MMModelClass.h | 87 ++-- NetMix-0.2.0/NetMix/src/Makevars | 3 NetMix-0.2.0/NetMix/src/RcppExports.cpp | 55 +- NetMix-0.2.0/NetMix/src/mmsbm_fit.cpp | 107 +++-- 40 files changed, 1481 insertions(+), 788 deletions(-)
Title: Quantitative Support of Decision Making under Uncertainty
Description: Supporting the quantitative analysis of binary welfare based
decision making processes using Monte Carlo simulations. Decision support
is given on two levels: (i) The actual decision level is to choose between
two alternatives under probabilistic uncertainty. This package calculates
the optimal decision based on maximizing expected welfare. (ii) The meta
decision level is to allocate resources to reduce the uncertainty in the
underlying decision problem, i.e to increase the current information to
improve the actual decision making process. This problem is dealt with
using the Value of Information Analysis. The Expected Value of
Information for arbitrary prospective estimates can be calculated as
well as Individual Expected Value of Perfect Information.
The probabilistic calculations are done via Monte Carlo
simulations. This Monte Carlo functionality can be used on its own.
Author: Eike Luedeling [cre, aut] (University of Bonn),
Lutz Goehring [aut] (ICRAF and Lutz Goehring Consulting),
Katja Schiffers [aut] (University of Bonn),
Cory Whitney [aut] (University of Bonn),
Eduardo Fernandez [aut] (University of Bonn)
Maintainer: Eike Luedeling <eike@eikeluedeling.com>
Diff between decisionSupport versions 1.105.3 dated 2020-05-12 and 1.106 dated 2021-03-01
decisionSupport-1.105.3/decisionSupport/vignettes/agricultural-and-forest-meteorology.csl |only decisionSupport-1.105.3/decisionSupport/vignettes/elsevier-harvard.csl |only decisionSupport-1.106/decisionSupport/DESCRIPTION | 53 decisionSupport-1.106/decisionSupport/MD5 | 77 - decisionSupport-1.106/decisionSupport/NAMESPACE | 9 decisionSupport-1.106/decisionSupport/R/as.data.frame.mcSimulation.R |only decisionSupport-1.106/decisionSupport/R/compound_figure.R |only decisionSupport-1.106/decisionSupport/R/decisionSupport-package.R | 2 decisionSupport-1.106/decisionSupport/R/eviSimulation.R | 9 decisionSupport-1.106/decisionSupport/R/global_variables.R |only decisionSupport-1.106/decisionSupport/R/hist.mcSimulation.R |only decisionSupport-1.106/decisionSupport/R/mcSimulation.R | 247 --- decisionSupport-1.106/decisionSupport/R/multi_EVPI.R | 3 decisionSupport-1.106/decisionSupport/R/plot_cashflow.R |only decisionSupport-1.106/decisionSupport/R/plot_distributions.R |only decisionSupport-1.106/decisionSupport/R/plot_evpi.R |only decisionSupport-1.106/decisionSupport/R/plot_pls.R |only decisionSupport-1.106/decisionSupport/R/print.mcSimuation.R |only decisionSupport-1.106/decisionSupport/R/print.summary.mcSimulation.R |only decisionSupport-1.106/decisionSupport/R/summary.mcSimulation.R |only decisionSupport-1.106/decisionSupport/R/welfareDecisionAnalysis.R | 7 decisionSupport-1.106/decisionSupport/README.md |only decisionSupport-1.106/decisionSupport/build/partial.rdb |only decisionSupport-1.106/decisionSupport/build/vignette.rds |binary decisionSupport-1.106/decisionSupport/inst/doc/example_decision_function.R |only decisionSupport-1.106/decisionSupport/inst/doc/example_decision_function.Rmd |only decisionSupport-1.106/decisionSupport/inst/doc/example_decision_function.html |only decisionSupport-1.106/decisionSupport/inst/doc/wildfire_example.Rmd | 3 decisionSupport-1.106/decisionSupport/inst/doc/wildfire_example.html | 637 +++++----- decisionSupport-1.106/decisionSupport/man/as.data.frame.mcSimulation.Rd | 2 decisionSupport-1.106/decisionSupport/man/compound_figure.Rd |only decisionSupport-1.106/decisionSupport/man/decisionSupport-package.Rd | 2 decisionSupport-1.106/decisionSupport/man/eviSimulation.Rd | 2 decisionSupport-1.106/decisionSupport/man/figures |only decisionSupport-1.106/decisionSupport/man/hist.mcSimulation.Rd | 2 decisionSupport-1.106/decisionSupport/man/mcSimulation.Rd | 13 decisionSupport-1.106/decisionSupport/man/multi_EVPI.Rd | 5 decisionSupport-1.106/decisionSupport/man/plot_cashflow.Rd |only decisionSupport-1.106/decisionSupport/man/plot_distributions.Rd |only decisionSupport-1.106/decisionSupport/man/plot_evpi.Rd |only decisionSupport-1.106/decisionSupport/man/plot_pls.Rd |only decisionSupport-1.106/decisionSupport/man/print.mcSimulation.Rd | 2 decisionSupport-1.106/decisionSupport/man/print.summary.mcSimulation.Rd | 2 decisionSupport-1.106/decisionSupport/man/sort.summary.eviSimulation.Rd | 2 decisionSupport-1.106/decisionSupport/man/summary.eviSimulation.Rd | 10 decisionSupport-1.106/decisionSupport/man/summary.mcSimulation.Rd | 12 decisionSupport-1.106/decisionSupport/man/summary.welfareDecisionAnalysis.Rd | 10 decisionSupport-1.106/decisionSupport/man/welfareDecisionAnalysis.Rd | 2 decisionSupport-1.106/decisionSupport/vignettes/example_decision_function.Rmd |only decisionSupport-1.106/decisionSupport/vignettes/example_input_table.csv |only decisionSupport-1.106/decisionSupport/vignettes/vignettes.bib |only decisionSupport-1.106/decisionSupport/vignettes/wildfire.bib | 17 decisionSupport-1.106/decisionSupport/vignettes/wildfire_example.Rmd | 3 53 files changed, 505 insertions(+), 628 deletions(-)
More information about decisionSupport at CRAN
Permanent link
Title: Plot Shipboard DAS Data
Description: A utility program oriented to create maps, plot data, and do basic data summaries
of 'DAS' data <https://swfsc-publications.fisheries.noaa.gov/publications/TM/SWFSC/NOAA-TM-NMFS-SWFSC-305.PDF>
produced by 'WinCruz' from the Southwest Fisheries Science Center.
<https://www.fisheries.noaa.gov/west-coast/science-data/california-current-marine-mammal-assessment-program>.
Author: Sam Woodman [aut, cre] (<https://orcid.org/0000-0001-6071-8186>),
Tim Gerrodette [aut]
Maintainer: Sam Woodman <sam.woodman@noaa.gov>
Diff between CruzPlot versions 1.4.4 dated 2021-01-25 and 1.4.5 dated 2021-03-01
DESCRIPTION | 6 +-- MD5 | 22 ++++++------- NEWS.md | 4 ++ inst/shiny/app.R | 2 - inst/shiny/server_1_map/cruzMapColorGrid.R | 20 +++++------ inst/shiny/server_1_map/cruzMapSave.R | 24 +++++--------- inst/shiny/server_2_das/cruzDasEffortEvent.R | 12 ++++--- inst/shiny/server_2_das/cruzDasEffortOther.R | 5 +- inst/shiny/server_2_das/cruzDasGeneral.R | 20 +++++------ inst/shiny/server_2_das/cruzDasSightFilter.R | 5 +- inst/shiny/server_2_das/cruzDasSightProcess.R | 14 +++++--- inst/shiny/server_draw_local/draw_setVals.R | 44 ++++++++------------------ 12 files changed, 81 insertions(+), 97 deletions(-)
Title: Quick Wraps 2
Description: A collection of (wrapper) functions the creator found useful
for quickly placing data summaries and formatted regression results into
'.Rnw' or '.Rmd' files. Functions for generating commonly used graphics,
such as receiver operating curves or Bland-Altman plots, are also provided
by 'qwraps2'. 'qwraps2' is a updated version of a package 'qwraps'. The
original version 'qwraps' was never submitted to CRAN but can be found at
<https://github.com/dewittpe/qwraps/>. The implementation and limited scope
of the functions within 'qwraps2' <https://github.com/dewittpe/qwraps2/> is
fundamentally different from 'qwraps'.
Author: Peter DeWitt [aut, cre],
Tell Bennett [ctb]
Maintainer: Peter DeWitt <dewittpe@gmail.com>
Diff between qwraps2 versions 0.5.0 dated 2020-09-01 and 0.5.1 dated 2021-03-01
DESCRIPTION | 6 MD5 | 18 NEWS.md | 7 R/confusion_matrix.R | 4 build/vignette.rds |binary data/mtcars2.rda |binary data/pefr.rda |binary inst/doc/qwraps2-data-sets.html | 383 ++++------------ inst/doc/qwraps2-graphics.html | 582 ++++++++----------------- inst/doc/summary-statistics.html | 906 +++++++++++++++------------------------ 10 files changed, 709 insertions(+), 1197 deletions(-)
Title: Simple Methods for Calculating Value at Risk and Expected
Shortfall
Description: Enables the user to calculate Value at Risk (VaR)
and Expected Shortfall (ES) by means of various types of historical
simulation. Currently plain historical simulation as well as age- and
volatility-weighted historical simulation are implemented in this
package. Volatility weighting is carried out via an exponentially
weighted moving average (EWMA). The methods of the package are
described in Gurrola-Perez, P. and Murphy, D. (2015)
<https://EconPapers.repec.org/RePEc:boe:boeewp:0525>.
Author: Sebastian Letmathe [aut, cre] (Paderborn University, Germany)
Maintainer: Sebastian Letmathe <sebastian.letmathe@uni-paderborn.de>
Diff between quarks versions 1.0.4 dated 2021-02-21 and 1.0.5 dated 2021-03-01
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- NEWS.md | 18 ++++++++++++------ R/hs.R | 4 ++-- R/rollcast.R | 22 +++++++++++----------- man/rollcast.Rd | 20 ++++++++++---------- 6 files changed, 43 insertions(+), 37 deletions(-)
Title: Use Open Data from the Czech Statistical Office in R
Description: Get programmatic access to the open data provided by the
Czech Statistical Office (CZSO, <https://czso.cz>).
Author: Petr Bouchal [aut, cre] (<https://orcid.org/0000-0002-0471-716X>),
Jindra Lacko [ctb]
Maintainer: Petr Bouchal <pbouchal@gmail.com>
Diff between czso versions 0.3.2 dated 2020-10-22 and 0.3.4 dated 2021-03-01
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ NEWS.md | 8 ++++++++ R/core.R | 33 +++++++++++++++++---------------- README.md | 4 +++- build/czso.pdf |binary man/czso-package.Rd | 5 +++-- 7 files changed, 41 insertions(+), 29 deletions(-)
Title: A GUI to Correct Measurement Bias in DNA Methylation Analyses
Description: A GUI to correct measurement bias in DNA
methylation analyses. The 'BiasCorrector' package just wraps the
functions implemented in the 'R' package 'rBiasCorrection' into a
shiny web application in order to make them more easily accessible.
Author: Lorenz A. Kapsner [cre, aut, cph]
(<https://orcid.org/0000-0003-1866-860X>),
Evgeny A. Moskalev [aut]
Maintainer: Lorenz A. Kapsner <lorenz.kapsner@gmail.com>
Diff between BiasCorrector versions 0.1.2 dated 2020-09-22 and 0.1.3 dated 2021-03-01
BiasCorrector-0.1.2/BiasCorrector/inst/application/reset.js |only BiasCorrector-0.1.3/BiasCorrector/DESCRIPTION | 9 BiasCorrector-0.1.3/BiasCorrector/MD5 | 45 BiasCorrector-0.1.3/BiasCorrector/R/app_omitnas_modal.R | 80 BiasCorrector-0.1.3/BiasCorrector/R/app_render_regressionstatistics.R | 232 - BiasCorrector-0.1.3/BiasCorrector/R/app_requirements_error.R | 224 - BiasCorrector-0.1.3/BiasCorrector/R/app_utils.R | 44 BiasCorrector-0.1.3/BiasCorrector/R/launch_app.R | 200 - BiasCorrector-0.1.3/BiasCorrector/R/moduleCalibrationFile.R | 728 +-- BiasCorrector-0.1.3/BiasCorrector/R/moduleCorrectedPlots.R | 1972 ++++------ BiasCorrector-0.1.3/BiasCorrector/R/moduleCorrectedStatistics.R | 570 +- BiasCorrector-0.1.3/BiasCorrector/R/moduleExperimentalFile.R | 486 +- BiasCorrector-0.1.3/BiasCorrector/R/moduleFileupload.R | 1174 ++--- BiasCorrector-0.1.3/BiasCorrector/R/moduleInfo.R | 224 - BiasCorrector-0.1.3/BiasCorrector/R/moduleLog.R | 262 - BiasCorrector-0.1.3/BiasCorrector/R/moduleModelSelection.R | 456 +- BiasCorrector-0.1.3/BiasCorrector/R/modulePlotting.R | 904 ++-- BiasCorrector-0.1.3/BiasCorrector/R/moduleResults.R | 1310 +++--- BiasCorrector-0.1.3/BiasCorrector/R/moduleSettings.R | 688 +-- BiasCorrector-0.1.3/BiasCorrector/R/moduleStatistics.R | 640 +-- BiasCorrector-0.1.3/BiasCorrector/R/type2Files.R | 218 - BiasCorrector-0.1.3/BiasCorrector/README.md | 2 BiasCorrector-0.1.3/BiasCorrector/inst/application/server.R | 1139 ++--- BiasCorrector-0.1.3/BiasCorrector/inst/application/ui.R | 316 - 24 files changed, 5952 insertions(+), 5971 deletions(-)
Title: Interface for the RobinHood.com No Commission Investing Platform
Description: Execute API calls to the RobinHood <https://robinhood.com> investing platform. Functionality includes accessing account data and current holdings, retrieving investment statistics and quotes, placing and canceling orders, getting market trading hours, searching investments by popular tag, and interacting with watch lists.
Author: Joseph Blubaugh
Maintainer: Joseph Blubaugh <jestonblu@gmail.com>
Diff between RobinHood versions 1.5 dated 2021-01-06 and 1.6 dated 2021-03-01
RobinHood-1.5/RobinHood/R/api_portfolio.R |only RobinHood-1.5/RobinHood/R/cancel_ach_tranfer.R |only RobinHood-1.6/RobinHood/DESCRIPTION | 7 - RobinHood-1.6/RobinHood/MD5 | 92 +++++++++--------- RobinHood-1.6/RobinHood/NAMESPACE | 2 RobinHood-1.6/RobinHood/R/api_accounts.R | 2 RobinHood-1.6/RobinHood/R/api_accounts_crypto.R | 2 RobinHood-1.6/RobinHood/R/api_ach.R | 2 RobinHood-1.6/RobinHood/R/api_contracts.R | 2 RobinHood-1.6/RobinHood/R/api_currency_pairs.R | 15 ++ RobinHood-1.6/RobinHood/R/api_endpoints.R | 6 - RobinHood-1.6/RobinHood/R/api_fundamentals.R | 2 RobinHood-1.6/RobinHood/R/api_historicals.R | 2 RobinHood-1.6/RobinHood/R/api_historicals_crypto.R |only RobinHood-1.6/RobinHood/R/api_instruments.R | 2 RobinHood-1.6/RobinHood/R/api_instruments_options.R | 2 RobinHood-1.6/RobinHood/R/api_login.R | 2 RobinHood-1.6/RobinHood/R/api_logout.R | 2 RobinHood-1.6/RobinHood/R/api_marketdata.R | 19 ++- RobinHood-1.6/RobinHood/R/api_markets.R | 2 RobinHood-1.6/RobinHood/R/api_orders.R | 2 RobinHood-1.6/RobinHood/R/api_orders_crypto.R | 32 ++++-- RobinHood-1.6/RobinHood/R/api_orders_options.R | 2 RobinHood-1.6/RobinHood/R/api_portfolio_crypto.R | 2 RobinHood-1.6/RobinHood/R/api_portfolios.R |only RobinHood-1.6/RobinHood/R/api_positions.R | 7 + RobinHood-1.6/RobinHood/R/api_positions_crypto.R | 7 - RobinHood-1.6/RobinHood/R/api_positions_options.R | 2 RobinHood-1.6/RobinHood/R/api_quote.R | 2 RobinHood-1.6/RobinHood/R/api_quote_crypto.R | 2 RobinHood-1.6/RobinHood/R/api_ratings.R |only RobinHood-1.6/RobinHood/R/api_tag.R | 2 RobinHood-1.6/RobinHood/R/api_tickers.R | 2 RobinHood-1.6/RobinHood/R/api_user.R | 2 RobinHood-1.6/RobinHood/R/api_watchlist.R | 8 + RobinHood-1.6/RobinHood/R/cancel_ach_transfer.R |only RobinHood-1.6/RobinHood/R/get_fundamentals.R | 11 -- RobinHood-1.6/RobinHood/R/get_historicals.R | 2 RobinHood-1.6/RobinHood/R/get_historicals_crypto.R |only RobinHood-1.6/RobinHood/R/get_order_history_crypto.R | 14 +- RobinHood-1.6/RobinHood/R/get_positions_crypto.R | 12 +- RobinHood-1.6/RobinHood/R/get_ratings.R |only RobinHood-1.6/RobinHood/R/get_tickers.R | 26 ++--- RobinHood-1.6/RobinHood/R/place_order.R | 1 RobinHood-1.6/RobinHood/R/watchlist.R | 25 ++-- RobinHood-1.6/RobinHood/man/api_historicals_crypto.Rd |only RobinHood-1.6/RobinHood/man/api_marketdata.Rd | 2 RobinHood-1.6/RobinHood/man/api_portfolios.Rd | 2 RobinHood-1.6/RobinHood/man/api_ratings.Rd |only RobinHood-1.6/RobinHood/man/cancel_ach_transfer.Rd | 2 RobinHood-1.6/RobinHood/man/get_historicals.Rd | 2 RobinHood-1.6/RobinHood/man/get_historicals_crypto.Rd |only RobinHood-1.6/RobinHood/man/get_ratings.Rd |only 53 files changed, 196 insertions(+), 138 deletions(-)
Title: Chaos Game
Description: The main objective of the package is to enter a word of at least two letters based on which an Iterated Function System with Probabilities is constructed, and a two-dimensional fractal containing the chosen word infinitely often is generated via the Chaos Game. Additionally, the package allows to project the two-dimensional fractal on several three-dimensional surfaces and to transform the fractal into another fractal with uniform marginals.
Author: Florian Griessenberger [aut, cre],
Manuela Schreyer [aut],
Johannes Bartel [aut],
Wolfgang Trutschnig [aut]
Maintainer: Florian Griessenberger <florian.griessenberger@sbg.ac.at>
Diff between ChaosGame versions 0.4 dated 2018-12-18 and 1.0 dated 2021-03-01
ChaosGame-0.4/ChaosGame/man/ChaosGame-package.Rd |only ChaosGame-1.0/ChaosGame/DESCRIPTION | 26 - ChaosGame-1.0/ChaosGame/MD5 | 15 ChaosGame-1.0/ChaosGame/NAMESPACE | 2 ChaosGame-1.0/ChaosGame/R/ChaosGame-internal.R | 410 +++++++++++++++++++---- ChaosGame-1.0/ChaosGame/R/plot_word.R | 63 ++- ChaosGame-1.0/ChaosGame/R/plot_word3D.R | 274 +++++++++------ ChaosGame-1.0/ChaosGame/man/plot_word.Rd | 119 +++--- ChaosGame-1.0/ChaosGame/man/plot_word3D.Rd | 259 ++++++-------- 9 files changed, 763 insertions(+), 405 deletions(-)
Title: R Interface to the Pushbullet Messaging Service
Description: An R interface to the Pushbullet messaging service which
provides fast and efficient notifications (and file transfer) between
computers, phones and tablets. An account has to be registered at the
site <https://www.pushbullet.com> site to obtain a (free) API key.
Author: Dirk Eddelbuettel with contributions by Bill Evans, Mike Birdgeneau,
Henrik Bengtsson, Seth Wenchel, Colin Gillespie and Chan-Yub Park
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RPushbullet versions 0.3.3 dated 2020-01-19 and 0.3.4 dated 2021-03-01
ChangeLog | 50 ++++++++++++++++++++++++++++++++++++++++++++ DESCRIPTION | 10 ++++---- MD5 | 22 +++++++++---------- R/devices.R | 4 +-- R/init.R | 24 ++++++++++++--------- R/pushes.R | 10 ++++---- README.md | 51 +++++++++++++++++++++++++++++---------------- inst/NEWS.Rd | 9 +++++++ man/pbGetDevices.Rd | 2 - man/pbPost.Rd | 4 +-- man/rpushbullet-package.Rd | 6 ++--- tests/simpleTests.R | 32 +++++++++++++++++++++++++++- 12 files changed, 166 insertions(+), 58 deletions(-)
Title: Fast Fixed-Effects Estimations
Description: Fast and user-friendly estimation of econometric models with multiple fixed-effects. Includes ordinary least squares (OLS), generalized linear models (GLM) and the negative binomial.
The core of the package is based on optimized parallel C++ code, scaling especially well for large data sets. The method to obtain the fixed-effects coefficients is based on Berge (2018) <https://wwwen.uni.lu/content/download/110162/1299525/file/2018_13>.
Further provides tools to export and view the results of several estimations with intuitive design to cluster the standard-errors.
Author: Laurent Berge [aut, cre],
Sebastian Krantz [ctb]
Maintainer: Laurent Berge <laurent.berge@u-bordeaux.fr>
Diff between fixest versions 0.8.2 dated 2021-02-11 and 0.8.3 dated 2021-03-01
DESCRIPTION | 6 +++--- MD5 | 22 +++++++++++----------- NEWS.md | 17 ++++++++++++++++- R/ESTIMATION_FUNS.R | 3 +-- R/MiscFuns.R | 22 +++++++++++++++++----- R/fixest_env.R | 6 ++++++ inst/doc/exporting_tables.html | 4 ++-- inst/doc/fixest_walkthrough.html | 14 +++++++------- inst/doc/multiple_estimations.html | 4 ++-- inst/doc/standard_errors.html | 4 ++-- src/demeaning.cpp | 24 ++++++++++++++++++++---- tests/fixest_tests.R | 7 ++++++- 12 files changed, 93 insertions(+), 40 deletions(-)
Title: Wrapper for 'FFTW3' Includes: One-Dimensional, Two-Dimensional,
Three-Dimensional, and Multivariate Transforms
Description: Provides a wrapper for several 'FFTW' functions. This package provides access to the two-dimensional 'FFT', the multivariate 'FFT', and the one-dimensional real to complex 'FFT' using the 'FFTW3' library. The package includes the functions fftw() and mvfftw() which are designed to mimic the functionality of the R functions fft() and mvfft(). The 'FFT' functions have a parameter that allows them to not return the redundant complex conjugate when the input is real data.
Author: Karim Rahim <karim.rahim@queensu.ca>
Maintainer: Karim Rahim <karim.rahim@queensu.ca>
Diff between fftwtools versions 0.9-10 dated 2021-02-22 and 0.9-11 dated 2021-03-01
fftwtools-0.9-10/fftwtools/src/Makevars |only fftwtools-0.9-10/fftwtools/src/build |only fftwtools-0.9-11/fftwtools/DESCRIPTION | 6 fftwtools-0.9-11/fftwtools/MD5 | 11 - fftwtools-0.9-11/fftwtools/cleanup |only fftwtools-0.9-11/fftwtools/configure |only fftwtools-0.9-11/fftwtools/configure.ac | 70 +++++------ fftwtools-0.9-11/fftwtools/inst/doc/testTimeAndSimpleUse.pdf |binary fftwtools-0.9-11/fftwtools/src/Makevars.in |only 9 files changed, 46 insertions(+), 41 deletions(-)
Title: Comparing Single Cases to Small Samples
Description: When comparing single cases to control populations and no parameters are known researchers and clinicians must estimate these with a control sample. This is often done when testing a case's abnormality on some variable or testing abnormality of the discrepancy between two variables. Appropriate frequentist and Bayesian methods for doing this are here implemented, including tests allowing for the inclusion of covariates. These have been developed first and foremost by John Crawford and Paul Garthwaite, e.g. in Crawford and Howell (1998) <doi:10.1076/clin.12.4.482.7241>, Crawford and Garthwaite (2005) <doi:10.1037/0894-4105.19.3.318>, Crawford and Garthwaite (2007) <doi:10.1080/02643290701290146> and Crawford, Garthwaite and Ryan (2011) <doi:10.1016/j.cortex.2011.02.017>. The package is also equipped with power calculators for each method.
Author: Jonathan Rittmo [aut, cre] (<https://orcid.org/0000-0001-5075-0166>),
Robert McIntosh [aut] (<https://orcid.org/0000-0002-7615-6699>)
Maintainer: Jonathan Rittmo <j.rittmo@gmail.com>
Diff between singcar versions 0.1.2 dated 2021-01-07 and 0.1.3 dated 2021-03-01
singcar-0.1.2/singcar/vignettes/apa.csl |only singcar-0.1.2/singcar/vignettes/singcar_vignette.bib |only singcar-0.1.3/singcar/DESCRIPTION | 6 singcar-0.1.3/singcar/MD5 | 45 singcar-0.1.3/singcar/NEWS.md | 8 singcar-0.1.3/singcar/R/BSDT.R | 69 singcar-0.1.3/singcar/R/BSDT_cov.R | 84 singcar-0.1.3/singcar/R/BTD.R | 49 singcar-0.1.3/singcar/R/BTD_cov.R | 66 singcar-0.1.3/singcar/R/RSDT.R | 41 singcar-0.1.3/singcar/R/TD.R | 54 singcar-0.1.3/singcar/R/UDT.R | 55 singcar-0.1.3/singcar/R/deficit_power.R | 54 singcar-0.1.3/singcar/R/dissoc_power.R | 69 singcar-0.1.3/singcar/build/partial.rdb |binary singcar-0.1.3/singcar/build/vignette.rds |binary singcar-0.1.3/singcar/inst/doc/singcar_vignette.R | 247 - singcar-0.1.3/singcar/inst/doc/singcar_vignette.Rmd | 1846 +++++++---- singcar-0.1.3/singcar/inst/doc/singcar_vignette.html | 1996 +++++++----- singcar-0.1.3/singcar/man/BSDT_cov_power.Rd | 4 singcar-0.1.3/singcar/man/BTD_cov_power.Rd | 5 singcar-0.1.3/singcar/tests/testthat/test-TD.R | 4 singcar-0.1.3/singcar/tests/testthat/test-power_functions.R | 12 singcar-0.1.3/singcar/vignettes/ref.bib |only singcar-0.1.3/singcar/vignettes/singcar_vignette.Rmd | 1846 +++++++---- 25 files changed, 4282 insertions(+), 2278 deletions(-)
Title: Analysis Functions of Respiratory Data
Description: Provides functions for the complete analysis of respiratory data. Consists of a set of functions that allow to preprocessing respiratory data, calculate both regular statistics and nonlinear statistics, conduct group comparison and visualize the results. Especially, Power Spectral Density ('PSD') (A. Eke (2000) <doi:10.1007/s004249900135>), 'MultiScale Entropy(MSE)' ('Madalena Costa(2002)' <doi:10.1103/PhysRevLett.89.068102>) and 'MultiFractal Detrended Fluctuation Analysis(MFDFA)' ('Jan W.Kantelhardt' (2002) <doi:10.1016/S0378-4371(02)01383-3>) were applied for the analysis of respiratory data.
Author: Xiaohua Douglas Zhang [aut, cph],
Teng Zhang [aut],
Xinzheng Dong [aut, cre]
Maintainer: Xinzheng Dong <dong.xinzheng@foxmail.com>
Diff between RespirAnalyzer versions 1.0.0 dated 2021-02-25 and 1.0.1 dated 2021-03-01
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- build/partial.rdb |binary src/MFDFA.cpp | 2 +- 4 files changed, 8 insertions(+), 8 deletions(-)
More information about RespirAnalyzer at CRAN
Permanent link
Title: UCA Rcmdr Plug-in
Description: Some extensions to Rcmdr (R Commander), randomness test,
variance test for one normal sample and predictions using active model,
made by R-UCA project and used in teaching statistics at University of Cadiz (UCA).
Author: Manuel Munoz-Marquez <manuel.munoz@uca.es>
Maintainer: Manuel Munoz-Marquez <manuel.munoz@uca.es>
Diff between RcmdrPlugin.UCA versions 4.3-3 dated 2021-02-23 and 4.3-4 dated 2021-03-01
ChangeLog | 3 +++ DESCRIPTION | 12 ++++++------ MD5 | 14 +++++++------- inst/doc/additions.html | 4 ++-- inst/doc/adiciones.html | 4 ++-- inst/etc/menus.txt | 2 +- man/RcmdrPlugin.UCA-package.Rd | 4 ++-- man/RcmdrPlugin.UCA.es-package.Rd | 4 ++-- 8 files changed, 25 insertions(+), 22 deletions(-)
More information about RcmdrPlugin.UCA at CRAN
Permanent link
Title: Accessing the Official 'Google Knowledge Graph' API
Description: A simple way to interact with and extract data from
the official 'Google Knowledge Graph' API <https://developers.google.com/knowledge-graph/>.
Author: Ricardo Correia [aut, cre] (<https://orcid.org/0000-0001-7359-9091>)
Maintainer: Ricardo Correia <rahc85@gmail.com>
Diff between gkgraphR versions 1.0.1 dated 2020-08-04 and 1.0.2 dated 2021-03-01
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- NEWS.md | 7 ++++++- R/querygkg.R | 7 ++++++- README.md | 1 + build/vignette.rds |binary inst/doc/gkgraphR.html | 4 ++-- man/querygkg.Rd | 3 +++ 8 files changed, 29 insertions(+), 15 deletions(-)
Title: Rasterize Layers for 'ggplot2'
Description: Rasterize only specific layers of a 'ggplot2' plot while simultaneously keeping all labels and text in vector format. This allows users to keep plots within the reasonable size limit without loosing vector properties of the scale-sensitive information.
Author: Viktor Petukhov [aut, cph],
Teun van den Brand [aut],
Evan Biederstedt [cre, aut]
Maintainer: Evan Biederstedt <evan.biederstedt@gmail.com>
Diff between ggrastr versions 0.2.2 dated 2021-02-19 and 0.2.3 dated 2021-03-01
DESCRIPTION | 16 - MD5 | 78 ++++--- R/geom-beeswarm-rast.R | 17 - R/geom-boxplot-jitter.R | 26 +- R/geom-jitter-rast.R | 9 R/geom-point-rast.R | 9 R/geom-quasirandom-rast.R | 10 R/geom-tile-rast.R | 9 R/geom-violin-rast.R | 9 R/rasterise.R | 61 +++++- R/utils.R | 4 README.md | 10 build/vignette.rds |binary inst/doc/Raster_geoms.R | 78 +++++-- inst/doc/Raster_geoms.Rmd | 145 ++++++++++---- inst/doc/Raster_geoms.html | 412 ++++++++++++++++++++++------------------- man/geom_beeswarm_rast.Rd | 17 - man/geom_boxplot_jitter.Rd | 17 - man/geom_jitter_rast.Rd | 9 man/geom_point_rast.Rd | 9 man/geom_quasirandom_rast.Rd | 9 man/geom_tile_rast.Rd | 9 man/geom_violin_rast.Rd | 9 man/rasterise.Rd | 28 ++ man/theme_pdf.Rd | 4 vignettes/Raster_geoms.Rmd | 145 ++++++++++---- vignettes/Raster_geoms.md | 173 ++++++++++++----- vignettes/boxplot_1000000.png |binary vignettes/figure_ggrastr |only vignettes/ggvec_50000_plot.png |binary 30 files changed, 866 insertions(+), 456 deletions(-)
Title: Robust Gene-Environment Interaction Analysis
Description: For the risk, progression, and response to treatment of many complex diseases, it has been increasingly recognized that gene-environment interactions play important roles beyond the main genetic and environmental effects. In practical interaction analyses, outliers in response variables and covariates are not uncommon. In addition, missingness in environmental factors is routinely encountered in epidemiological studies. The developed package consists of five robust approaches to address the outliers problems, among which two approaches can also accommodate missingness in environmental factors. Both continuous and right censored responses are considered. The proposed approaches are based on penalization and sparse boosting techniques for identifying important interactions, which are realized using efficient algorithms. Beyond the gene-environment analysis, the developed package can also be adopted to conduct analysis on interactions between other types of low-dimensional and high-dimensional data. (Mengyun Wu et al (2017), <doi:10.1080/00949655.2018.1523411>; Mengyun Wu et al (2017), <doi:10.1002/gepi.22055>; Yaqing Xu et al (2018), <doi:10.1080/00949655.2018.1523411>; Yaqing Xu et al (2019), <doi:10.1016/j.ygeno.2018.07.006>).
Author: Mengyun Wu [aut],
Xing Qin [aut, cre],
Shuangge Ma [aut]
Maintainer: Xing Qin <qin.xing@163.sufe.edu.cn>
Diff between GEInter versions 0.1.0 dated 2021-01-21 and 0.2.0 dated 2021-03-01
GEInter-0.1.0/GEInter/R/Augmentated.data.R |only GEInter-0.1.0/GEInter/man/Augmentated.data.Rd |only GEInter-0.2.0/GEInter/DESCRIPTION | 12 - GEInter-0.2.0/GEInter/MD5 | 107 +++++++------- GEInter-0.2.0/GEInter/NAMESPACE | 2 GEInter-0.2.0/GEInter/NEWS.md |only GEInter-0.2.0/GEInter/R/AR.R | 6 GEInter-0.2.0/GEInter/R/Augmented.data.R |only GEInter-0.2.0/GEInter/R/BLMCP.R | 60 +++++++- GEInter-0.2.0/GEInter/R/MCP_Hier.R | 37 ++++- GEInter-0.2.0/GEInter/R/Miss.boosting.R | 42 +++++ GEInter-0.2.0/GEInter/R/PTReg.R | 27 +++ GEInter-0.2.0/GEInter/R/QPCorr.matrix.R | 4 GEInter-0.2.0/GEInter/R/QPCorr.pval.R | 7 GEInter-0.2.0/GEInter/R/RobSBoosting.R | 172 +++++++++++++++++++++++- GEInter-0.2.0/GEInter/R/bic.BLMCP.R | 47 ++++-- GEInter-0.2.0/GEInter/R/bic.PTReg.R | 58 +++++--- GEInter-0.2.0/GEInter/R/boosting_impute.R | 23 +-- GEInter-0.2.0/GEInter/R/coef.BLMCP.R | 15 -- GEInter-0.2.0/GEInter/R/coef.PTReg.R | 6 GEInter-0.2.0/GEInter/R/coef.RobSBoosting.R | 120 +++++++++------- GEInter-0.2.0/GEInter/R/coef.bic.BLMCP.R | 16 -- GEInter-0.2.0/GEInter/R/coef.bic.PTReg.R | 2 GEInter-0.2.0/GEInter/R/data.R | 4 GEInter-0.2.0/GEInter/R/pen.m.R | 2 GEInter-0.2.0/GEInter/R/plot.BLMCP.R | 26 ++- GEInter-0.2.0/GEInter/R/plot.Miss.boosting.R | 69 +++++---- GEInter-0.2.0/GEInter/R/plot.PTReg.R | 27 ++- GEInter-0.2.0/GEInter/R/plot.RobSBoosting.R | 75 ++++++---- GEInter-0.2.0/GEInter/R/plot.bic.BLMCP.R | 25 ++- GEInter-0.2.0/GEInter/R/plot.bic.PTReg.R | 27 ++- GEInter-0.2.0/GEInter/R/predict.PTReg.R | 16 +- GEInter-0.2.0/GEInter/R/predict.bic.BLMCP.R | 2 GEInter-0.2.0/GEInter/R/predict.bic.PTReg.R | 2 GEInter-0.2.0/GEInter/R/simulated_data.R | 4 GEInter-0.2.0/GEInter/man/AR.Rd | 6 GEInter-0.2.0/GEInter/man/Augmented.data.Rd |only GEInter-0.2.0/GEInter/man/BLMCP.Rd | 5 GEInter-0.2.0/GEInter/man/Miss.boosting.Rd | 4 GEInter-0.2.0/GEInter/man/PTReg.Rd | 4 GEInter-0.2.0/GEInter/man/QPCorr.pval.Rd | 2 GEInter-0.2.0/GEInter/man/RobSBoosting.Rd | 6 GEInter-0.2.0/GEInter/man/Rob_data.Rd | 4 GEInter-0.2.0/GEInter/man/bic.BLMCP.Rd | 11 - GEInter-0.2.0/GEInter/man/bic.PTReg.Rd | 2 GEInter-0.2.0/GEInter/man/coef.BLMCP.Rd | 2 GEInter-0.2.0/GEInter/man/coef.PTReg.Rd | 2 GEInter-0.2.0/GEInter/man/coef.RobSBoosting.Rd | 7 GEInter-0.2.0/GEInter/man/coef.bic.BLMCP.Rd | 2 GEInter-0.2.0/GEInter/man/coef.bic.PTReg.Rd | 2 GEInter-0.2.0/GEInter/man/plot.BLMCP.Rd | 4 GEInter-0.2.0/GEInter/man/plot.Miss.boosting.Rd | 8 - GEInter-0.2.0/GEInter/man/plot.PTReg.Rd | 4 GEInter-0.2.0/GEInter/man/plot.RobSBoosting.Rd | 6 GEInter-0.2.0/GEInter/man/plot.bic.BLMCP.Rd | 4 GEInter-0.2.0/GEInter/man/plot.bic.PTReg.Rd | 4 GEInter-0.2.0/GEInter/man/simulated_data.Rd | 4 57 files changed, 776 insertions(+), 359 deletions(-)
Title: Copula-Based Regression Models for Bivariate Censored Data
Description: Copula-based regression models for bivariate censored data, including
bivariate right-censored data and bivariate interval-censored data. Currently
supports Clayton, Gumbel, Frank, Joe, AMH and Copula2 copula models. For
marginal models, it supports parametric (Weibull, Loglogistic, Gompertz) and
semiparametric (Cox and transformation) models. Includes methods for convenient
prediction and plotting. Also provides a bivariate time-to-event simulation function.
Method details can be found in Sun et.al (2019) Lifetime Data Analysis
and Sun et.al (In Press) Biostatistics.
Author: Tao Sun, Ying Ding
Maintainer: Tao Sun <tao.sun@pitt.edu>
Diff between CopulaCenR versions 1.1.2 dated 2019-03-20 and 1.1.3 dated 2021-03-01
DESCRIPTION | 10 +++++----- MD5 | 20 ++++++++++---------- R/ic_par_copula.R | 12 ++++++------ R/ic_sp_copula.R | 14 +++++++------- R/rc_par_copula.R | 13 +++++++------ R/rc_sp_copula.R | 13 +++++++------ man/CopulaCenR.Rd | 4 ++-- man/ic_par_copula.Rd | 12 ++++++------ man/ic_spTran_copula.Rd | 14 +++++++------- man/rc_par_copula.Rd | 12 ++++++------ man/rc_spCox_copula.Rd | 12 ++++++------ 11 files changed, 69 insertions(+), 67 deletions(-)
Title: Extended Inference for Lasso and Elastic-Net Regularized Cox and
Generalized Linear Models
Description: The c060 package provides additional functions to perform stability selection, model validation and parameter tuning for glmnet models.
Author: Martin Sill, Thomas Hielscher, Manuela Zucknick, Natalia Becker.
Maintainer: Frederic Bertrand <frederic.bertrand@utt.fr>
Diff between c060 versions 0.2-5 dated 2019-11-29 and 0.2-6 dated 2021-03-01
c060-0.2-5/c060/inst/doc |only c060-0.2-6/c060/DESCRIPTION | 15 ++++------- c060-0.2-6/c060/MD5 | 38 ++++++++++++++-------------- c060-0.2-6/c060/NEWS |only c060-0.2-6/c060/inst/CITATION | 4 +- c060-0.2-6/c060/man/EPSGO.Rd | 2 - c060-0.2-6/c060/man/PLL.coxnet.Rd | 2 - c060-0.2-6/c060/man/Plot.coef.glmnet.Rd | 2 - c060-0.2-6/c060/man/Plot.peperr.curves.Rd | 2 - c060-0.2-6/c060/man/balancedFolds.Rd | 2 - c060-0.2-6/c060/man/coef.intsearch.Rd | 2 - c060-0.2-6/c060/man/complexity.glmnet.Rd | 8 ++--- c060-0.2-6/c060/man/fit.glmnet.Rd | 8 ++--- c060-0.2-6/c060/man/plot.stabpath.Rd | 2 - c060-0.2-6/c060/man/plot.summary.int.Rd | 2 - c060-0.2-6/c060/man/predictProb.coxnet.Rd | 8 ++--- c060-0.2-6/c060/man/predictProb.glmnet.Rd | 8 ++--- c060-0.2-6/c060/man/stabpath.Rd | 2 - c060-0.2-6/c060/man/stabsel.Rd | 2 - c060-0.2-6/c060/man/summary.intsearch.Rd | 2 - c060-0.2-6/c060/man/tune.glmnet.interval.Rd | 2 - 21 files changed, 55 insertions(+), 58 deletions(-)
Title: Biodiversity Information Review and Decision Support
Description: It helps making the evaluation and preparation of biodiversity data
easy, systematic and reproducible. It also helps the users to overlay the
point observations into a custom grid that is useful for further analysis.
The review summarise statistics that helps evaluate whether a set of species
observations is fit-for-use and take decisions upon its use of on further
analyses. It does so by quantifying the sampling effort (amount of effort
expended during an event) and data completeness (data gaps) to help judge
whether the data is representative, valid and fit for any intended purpose.
The 'BIRDS' package is most useful when working with heterogeneous data sets
with variation in the sampling process, i.e. where data have been collected
and reported in various ways and therefore varying in sampling effort
and data completeness (i.e. how well the reported observations describe the
true state). Primary biodiversity data (PBD) combining data from different
data sets, like e.g. Global Biodiversity Information Facility (GBIF) mediated
data, commonly vary in the ways data has been generated - containing
opportunistically collected presence-only data together with and data from
systematic monitoring programs. The set of tools provided is aimed at
understanding the process that generated the data (i.e. observing, recording
and reporting species into databases). References:
Ruete (2015) <doi:10.3897/BDJ.3.e5361>; Szabo, Vesk, Baxter & Possingham (2010)
<doi:10.1890/09-0877.1>; Telfer, Preston 6 Rothery (2002) <doi:10.1016/S0006-3207(02)00050-2>.
Author: Debora Arlt [aut] (<https://orcid.org/0000-0003-0874-4250>),
Alejandro Ruete [aut, cre] (<https://orcid.org/0000-0001-7681-2812>),
Anton Hammarström [aut]
Maintainer: Alejandro Ruete <aleruete@gmail.com>
Diff between BIRDS versions 0.1.2 dated 2020-10-08 and 0.1.27.1 dated 2021-03-01
BIRDS-0.1.2/BIRDS/man/makeDggrid.Rd |only BIRDS-0.1.27.1/BIRDS/DESCRIPTION | 23 BIRDS-0.1.27.1/BIRDS/MD5 | 77 - BIRDS-0.1.27.1/BIRDS/NAMESPACE | 5 BIRDS-0.1.27.1/BIRDS/NEWS.md | 5 BIRDS-0.1.27.1/BIRDS/R/data.R | 4 BIRDS-0.1.27.1/BIRDS/R/exploreVisits.r | 42 BIRDS-0.1.27.1/BIRDS/R/exportBirds.R | 52 - BIRDS-0.1.27.1/BIRDS/R/makeGrid.r | 262 ++--- BIRDS-0.1.27.1/BIRDS/R/organizeBirds.R | 139 +- BIRDS-0.1.27.1/BIRDS/R/overlayBirds.R | 13 BIRDS-0.1.27.1/BIRDS/R/summarizeBirds.R | 54 - BIRDS-0.1.27.1/BIRDS/R/zzz.r |only BIRDS-0.1.27.1/BIRDS/README.md | 6 BIRDS-0.1.27.1/BIRDS/build/partial.rdb |only BIRDS-0.1.27.1/BIRDS/build/vignette.rds |binary BIRDS-0.1.27.1/BIRDS/inst/doc/BIRDS.html | 494 ++------- BIRDS-0.1.27.1/BIRDS/inst/doc/technical_details.html | 394 +------ BIRDS-0.1.27.1/BIRDS/inst/doc/working_with_xts_timeseries.html | 516 ++-------- BIRDS-0.1.27.1/BIRDS/man/BIRDS.Rd | 98 - BIRDS-0.1.27.1/BIRDS/man/bombusObs.Rd | 2 BIRDS-0.1.27.1/BIRDS/man/bryophytaObs.Rd | 2 BIRDS-0.1.27.1/BIRDS/man/communityMatrix.Rd | 68 - BIRDS-0.1.27.1/BIRDS/man/communityMatrixGrid.Rd | 70 - BIRDS-0.1.27.1/BIRDS/man/exploreVisits.Rd | 138 +- BIRDS-0.1.27.1/BIRDS/man/extractPresence.Rd | 36 BIRDS-0.1.27.1/BIRDS/man/focalSpReport.Rd | 108 +- BIRDS-0.1.27.1/BIRDS/man/focalSpSummary.Rd | 66 - BIRDS-0.1.27.1/BIRDS/man/getSpatial.Rd | 42 BIRDS-0.1.27.1/BIRDS/man/getSpatioTemporal.Rd | 42 BIRDS-0.1.27.1/BIRDS/man/getTemporal.Rd | 42 BIRDS-0.1.27.1/BIRDS/man/listSpecies.Rd | 48 BIRDS-0.1.27.1/BIRDS/man/makeCircle.Rd | 2 BIRDS-0.1.27.1/BIRDS/man/normalize.Rd | 36 BIRDS-0.1.27.1/BIRDS/man/organizeBirds.Rd | 248 ++-- BIRDS-0.1.27.1/BIRDS/man/organizeDate.Rd | 5 BIRDS-0.1.27.1/BIRDS/man/recBySpp.Rd | 82 - BIRDS-0.1.27.1/BIRDS/man/removeObs.Rd | 140 +- BIRDS-0.1.27.1/BIRDS/man/simplifySpp.Rd | 40 BIRDS-0.1.27.1/BIRDS/man/summarizeBirds.Rd | 118 +- BIRDS-0.1.27.1/BIRDS/man/whichNonEmpty.Rd | 38 41 files changed, 1434 insertions(+), 2123 deletions(-)
Title: Sparse Tables
Description: Fast Multiplication and Marginalization of Sparse Tables.
Author: Mads Lindskou [aut, cre]
Maintainer: Mads Lindskou <mads@math.aau.dk>
Diff between sparta versions 0.7.0 dated 2020-12-16 and 0.7.1 dated 2021-03-01
DESCRIPTION | 9 +++--- MD5 | 20 +++++++------- NAMESPACE | 5 +++ NEWS.md | 9 ++++++ R/api_converters.R | 34 ++++++++++++++++++++++++ R/api_sparta.R | 37 +++++++------------------- R/helpers_sparta.R | 74 ++++++++++++++++++++++++++++++----------------------- man/as_df.Rd |only man/getter.Rd | 6 ++++ man/merge.Rd | 4 -- man/sparsity.Rd |only src/merge.cpp | 1 12 files changed, 123 insertions(+), 76 deletions(-)
Title: Using 'Mathjax' in Rd Files
Description: Provides 'MathJax' and macros to enable its use within Rd files for rendering equations in the HTML help files.
Author: Wolfgang Viechtbauer [aut, cre]
(<https://orcid.org/0000-0003-3463-4063>)
Maintainer: Wolfgang Viechtbauer <wvb@wvbauer.com>
Diff between mathjaxr versions 1.2-0 dated 2021-01-30 and 1.4-0 dated 2021-03-01
DESCRIPTION | 8 ++++---- MD5 | 18 +++++++++--------- NEWS.md | 6 ++++++ R/preview_rd.r | 37 ++++++++++++++++++++++++++++++------- README.md | 4 ++-- build/mathjaxr.pdf |binary inst/doc/R_dark.css | 1 + man/mathjaxr-package.Rd | 4 ++-- man/preview_rd.Rd | 2 +- src/install.libs.R | 2 +- 10 files changed, 56 insertions(+), 26 deletions(-)
Title: Partially Ordered Sets in R
Description: Provides a set of basic tools for generating, analyzing, summarizing and visualizing finite partially ordered sets. In particular, it implements flexible and very efficient algorithms for the extraction of linear extensions and for the computation of mutual ranking probabilities and other user-defined functionals, over them. The package is meant as a computationally efficient "engine", for the implementation of data analysis procedures, on systems of multidimensional ordinal indicators and partially ordered data, in the spirit of Fattore, M. (2016) "Partially ordered sets and the measurement of multidimensional ordinal deprivation", Social Indicators Research <DOI:10.1007/s11205-015-1059-6>, and Fattore M. and Arcagni, A. (2018) "A reduced posetic approach to the measurement of multidimensional ordinal deprivation", Social Indicators Research <DOI:10.1007/s11205-016-1501-4>.
Author: Alberto Arcagni [aut, cre],
Alessandro Avellone [aut],
Marco Fattore [aut]
Maintainer: Alberto Arcagni <alberto.arcagni@uniroma1.it>
Diff between POSetR versions 1.0 dated 2021-02-15 and 1.0.1 dated 2021-03-01
DESCRIPTION | 8 ++++---- MD5 | 21 +++++++++++---------- R/LEapply.R | 24 ++++++++++++------------ build/partial.rdb |binary man/LEapply.Rd | 13 +++++-------- src/RMod.cpp | 26 ++++++++++++++++++-------- src/RMod.h | 4 ++-- src/linearExtentionLatticeOfIdeals.cpp | 10 ++++++++-- src/linearExtentionTreeOfIdeals.cpp | 4 +++- src/matrice.h |only src/poset.cpp | 30 +++++++++++++++++++++--------- src/poset.h | 3 ++- 12 files changed, 86 insertions(+), 57 deletions(-)
Title: Detecting Politeness Features in Text
Description: Detecting markers of politeness in English natural language. This package allows researchers to easily visualize and quantify politeness between groups of documents. This package combines prior research on the linguistic markers of politeness. We thank the Spencer Foundation, the Hewlett Foundation, and Harvard's Institute for Quantitative Social Science for support.
Author: Mike Yeomans, Alejandro Kantor, Dustin Tingley
Maintainer: Mike Yeomans <mk.yeomans@gmail.com>
Diff between politeness versions 0.7.6 dated 2021-01-13 and 0.7.7 dated 2021-03-01
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/politeness.R | 13 +++++++++---- inst/doc/politeness.html | 4 ++-- 4 files changed, 17 insertions(+), 12 deletions(-)
Title: Draw Samples with the Desired Properties from a Data Set
Description: A tool to sample data with the desired properties.Samples can be
drawn by purposive sampling with determining distributional
conditions, such as deviation from normality (skewness and kurtosis),
and sample size in quantitative research studies.
For purposive sampling, a researcher has something in mind and participants that
fit the purpose of the study are included (Etikan,Musa, & Alkassim, 2015)
<doi:10.11648/j.ajtas.20160501.11>.Purposive sampling can be useful for answering
many research questions (Klar & Leeper, 2019)
<doi:10.1002/9781119083771.ch21>.
Author: Kubra Atalay Kabasakal [aut, cre]
(<https://orcid.org/0000-0002-3580-5568>),
Huseyin Yıldız [ctb] (<https://orcid.org/0000-0003-2387-263X>)
Maintainer: Kubra Atalay Kabasakal <katalay@hacettepe.edu.tr>
Diff between drawsample versions 0.1.1 dated 2020-12-02 and 1.0.0 dated 2021-03-01
drawsample-0.1.1/drawsample/inst/sample1.dat |only drawsample-0.1.1/drawsample/inst/sample1.png |only drawsample-0.1.1/drawsample/inst/sample2.dat |only drawsample-0.1.1/drawsample/inst/sample2.png |only drawsample-0.1.1/drawsample/inst/sample3.dat |only drawsample-0.1.1/drawsample/inst/sample3.png |only drawsample-0.1.1/drawsample/man/figures |only drawsample-1.0.0/drawsample/DESCRIPTION | 28 +++++++++--- drawsample-1.0.0/drawsample/MD5 | 40 ++++++++---------- drawsample-1.0.0/drawsample/NAMESPACE | 8 +++ drawsample-1.0.0/drawsample/NEWS.md | 2 drawsample-1.0.0/drawsample/R/constants_table.R | 2 drawsample-1.0.0/drawsample/R/draw_sample.R | 6 ++ drawsample-1.0.0/drawsample/R/draw_sample_n.R |only drawsample-1.0.0/drawsample/R/draw_sample_shiny.R |only drawsample-1.0.0/drawsample/R/globals.R |only drawsample-1.0.0/drawsample/R/package.R | 10 ++++ drawsample-1.0.0/drawsample/build/partial.rdb |binary drawsample-1.0.0/drawsample/inst/CITATION |only drawsample-1.0.0/drawsample/man/constants_table.Rd | 2 drawsample-1.0.0/drawsample/man/draw_sample.Rd | 6 ++ drawsample-1.0.0/drawsample/man/draw_sample_n.Rd |only drawsample-1.0.0/drawsample/man/draw_sample_shiny.Rd |only drawsample-1.0.0/drawsample/man/drawsample-package.Rd | 15 ++++++ drawsample-1.0.0/drawsample/tests |only 25 files changed, 85 insertions(+), 34 deletions(-)
Title: Headers for the 'xtensor' Library
Description: The 'xtensor' C++ library for numerical analysis with
multi-dimensional array expressions is provided as a header-only
C++14 library. It offers an extensible expression system enabling
lazy broadcasting; an API following the idioms of the C++ standard
library; and tools to manipulate array expressions and build upon 'xtensor'.
Author: Johan Mabille, Sylvain Corlay and Wolf Vollprecht
Maintainer: Sylvain Corlay <sylvain.corlay@gmail.com>
Diff between xtensor versions 0.11.1-0 dated 2019-06-22 and 0.13.2-0 dated 2021-03-01
xtensor-0.11.1-0/xtensor/R |only xtensor-0.11.1-0/xtensor/src/RcppExports.cpp |only xtensor-0.13.2-0/xtensor/DESCRIPTION | 8 xtensor-0.13.2-0/xtensor/LICENSE | 2 xtensor-0.13.2-0/xtensor/MD5 | 375 ++- xtensor-0.13.2-0/xtensor/README.md | 62 xtensor-0.13.2-0/xtensor/inst/include/xsimd/config/xsimd_align.hpp | 12 xtensor-0.13.2-0/xtensor/inst/include/xsimd/config/xsimd_config.hpp | 8 xtensor-0.13.2-0/xtensor/inst/include/xsimd/config/xsimd_include.hpp | 4 xtensor-0.13.2-0/xtensor/inst/include/xsimd/config/xsimd_instruction_set.hpp | 121 - xtensor-0.13.2-0/xtensor/inst/include/xsimd/math/xsimd_basic_math.hpp | 4 xtensor-0.13.2-0/xtensor/inst/include/xsimd/math/xsimd_error.hpp | 4 xtensor-0.13.2-0/xtensor/inst/include/xsimd/math/xsimd_estrin.hpp |only xtensor-0.13.2-0/xtensor/inst/include/xsimd/math/xsimd_exp_reduction.hpp | 4 xtensor-0.13.2-0/xtensor/inst/include/xsimd/math/xsimd_exponential.hpp | 4 xtensor-0.13.2-0/xtensor/inst/include/xsimd/math/xsimd_fp_manipulation.hpp | 4 xtensor-0.13.2-0/xtensor/inst/include/xsimd/math/xsimd_fp_sign.hpp | 4 xtensor-0.13.2-0/xtensor/inst/include/xsimd/math/xsimd_gamma.hpp | 4 xtensor-0.13.2-0/xtensor/inst/include/xsimd/math/xsimd_horner.hpp | 15 xtensor-0.13.2-0/xtensor/inst/include/xsimd/math/xsimd_hyperbolic.hpp | 4 xtensor-0.13.2-0/xtensor/inst/include/xsimd/math/xsimd_invtrigo.hpp | 4 xtensor-0.13.2-0/xtensor/inst/include/xsimd/math/xsimd_logarithm.hpp | 4 xtensor-0.13.2-0/xtensor/inst/include/xsimd/math/xsimd_math.hpp | 4 xtensor-0.13.2-0/xtensor/inst/include/xsimd/math/xsimd_math_complex.hpp | 79 xtensor-0.13.2-0/xtensor/inst/include/xsimd/math/xsimd_numerical_constant.hpp | 4 xtensor-0.13.2-0/xtensor/inst/include/xsimd/math/xsimd_power.hpp | 4 xtensor-0.13.2-0/xtensor/inst/include/xsimd/math/xsimd_rem_pio2.hpp | 5 xtensor-0.13.2-0/xtensor/inst/include/xsimd/math/xsimd_rounding.hpp | 4 xtensor-0.13.2-0/xtensor/inst/include/xsimd/math/xsimd_scalar.hpp | 20 xtensor-0.13.2-0/xtensor/inst/include/xsimd/math/xsimd_trigo_reduction.hpp | 4 xtensor-0.13.2-0/xtensor/inst/include/xsimd/math/xsimd_trigonometric.hpp | 4 xtensor-0.13.2-0/xtensor/inst/include/xsimd/memory/xsimd_aligned_allocator.hpp | 11 xtensor-0.13.2-0/xtensor/inst/include/xsimd/memory/xsimd_aligned_stack_buffer.hpp | 4 xtensor-0.13.2-0/xtensor/inst/include/xsimd/memory/xsimd_alignment.hpp | 6 xtensor-0.13.2-0/xtensor/inst/include/xsimd/memory/xsimd_load_store.hpp | 87 xtensor-0.13.2-0/xtensor/inst/include/xsimd/stl/algorithms.hpp | 6 xtensor-0.13.2-0/xtensor/inst/include/xsimd/stl/iterator.hpp | 17 xtensor-0.13.2-0/xtensor/inst/include/xsimd/types/xsimd_avx512_bool.hpp | 87 xtensor-0.13.2-0/xtensor/inst/include/xsimd/types/xsimd_avx512_complex.hpp | 18 xtensor-0.13.2-0/xtensor/inst/include/xsimd/types/xsimd_avx512_conversion.hpp | 119 + xtensor-0.13.2-0/xtensor/inst/include/xsimd/types/xsimd_avx512_double.hpp | 25 xtensor-0.13.2-0/xtensor/inst/include/xsimd/types/xsimd_avx512_float.hpp | 26 xtensor-0.13.2-0/xtensor/inst/include/xsimd/types/xsimd_avx512_int16.hpp | 144 + xtensor-0.13.2-0/xtensor/inst/include/xsimd/types/xsimd_avx512_int32.hpp | 30 xtensor-0.13.2-0/xtensor/inst/include/xsimd/types/xsimd_avx512_int64.hpp | 37 xtensor-0.13.2-0/xtensor/inst/include/xsimd/types/xsimd_avx512_int8.hpp | 97 - xtensor-0.13.2-0/xtensor/inst/include/xsimd/types/xsimd_avx512_int_base.hpp | 75 xtensor-0.13.2-0/xtensor/inst/include/xsimd/types/xsimd_avx_complex.hpp | 4 xtensor-0.13.2-0/xtensor/inst/include/xsimd/types/xsimd_avx_conversion.hpp | 91 xtensor-0.13.2-0/xtensor/inst/include/xsimd/types/xsimd_avx_double.hpp | 35 xtensor-0.13.2-0/xtensor/inst/include/xsimd/types/xsimd_avx_float.hpp | 37 xtensor-0.13.2-0/xtensor/inst/include/xsimd/types/xsimd_avx_int16.hpp | 102 - xtensor-0.13.2-0/xtensor/inst/include/xsimd/types/xsimd_avx_int32.hpp | 83 xtensor-0.13.2-0/xtensor/inst/include/xsimd/types/xsimd_avx_int64.hpp | 70 xtensor-0.13.2-0/xtensor/inst/include/xsimd/types/xsimd_avx_int8.hpp | 70 xtensor-0.13.2-0/xtensor/inst/include/xsimd/types/xsimd_avx_int_base.hpp | 75 xtensor-0.13.2-0/xtensor/inst/include/xsimd/types/xsimd_base.hpp | 139 + xtensor-0.13.2-0/xtensor/inst/include/xsimd/types/xsimd_base_bool.hpp | 97 + xtensor-0.13.2-0/xtensor/inst/include/xsimd/types/xsimd_complex_base.hpp | 6 xtensor-0.13.2-0/xtensor/inst/include/xsimd/types/xsimd_fallback.hpp | 46 xtensor-0.13.2-0/xtensor/inst/include/xsimd/types/xsimd_int_conversion.hpp | 4 xtensor-0.13.2-0/xtensor/inst/include/xsimd/types/xsimd_neon_bool.hpp | 99 - xtensor-0.13.2-0/xtensor/inst/include/xsimd/types/xsimd_neon_complex.hpp | 6 xtensor-0.13.2-0/xtensor/inst/include/xsimd/types/xsimd_neon_conversion.hpp | 31 xtensor-0.13.2-0/xtensor/inst/include/xsimd/types/xsimd_neon_double.hpp | 23 xtensor-0.13.2-0/xtensor/inst/include/xsimd/types/xsimd_neon_float.hpp | 26 xtensor-0.13.2-0/xtensor/inst/include/xsimd/types/xsimd_neon_int16.hpp | 45 xtensor-0.13.2-0/xtensor/inst/include/xsimd/types/xsimd_neon_int32.hpp | 38 xtensor-0.13.2-0/xtensor/inst/include/xsimd/types/xsimd_neon_int64.hpp | 52 xtensor-0.13.2-0/xtensor/inst/include/xsimd/types/xsimd_neon_int8.hpp | 45 xtensor-0.13.2-0/xtensor/inst/include/xsimd/types/xsimd_neon_uint16.hpp | 36 xtensor-0.13.2-0/xtensor/inst/include/xsimd/types/xsimd_neon_uint32.hpp | 29 xtensor-0.13.2-0/xtensor/inst/include/xsimd/types/xsimd_neon_uint64.hpp | 43 xtensor-0.13.2-0/xtensor/inst/include/xsimd/types/xsimd_neon_uint8.hpp | 41 xtensor-0.13.2-0/xtensor/inst/include/xsimd/types/xsimd_neon_utils.hpp | 3 xtensor-0.13.2-0/xtensor/inst/include/xsimd/types/xsimd_sse_complex.hpp | 4 xtensor-0.13.2-0/xtensor/inst/include/xsimd/types/xsimd_sse_conversion.hpp | 43 xtensor-0.13.2-0/xtensor/inst/include/xsimd/types/xsimd_sse_double.hpp | 33 xtensor-0.13.2-0/xtensor/inst/include/xsimd/types/xsimd_sse_float.hpp | 35 xtensor-0.13.2-0/xtensor/inst/include/xsimd/types/xsimd_sse_int16.hpp | 52 xtensor-0.13.2-0/xtensor/inst/include/xsimd/types/xsimd_sse_int32.hpp | 52 xtensor-0.13.2-0/xtensor/inst/include/xsimd/types/xsimd_sse_int64.hpp | 56 xtensor-0.13.2-0/xtensor/inst/include/xsimd/types/xsimd_sse_int8.hpp | 43 xtensor-0.13.2-0/xtensor/inst/include/xsimd/types/xsimd_sse_int_base.hpp | 56 xtensor-0.13.2-0/xtensor/inst/include/xsimd/types/xsimd_traits.hpp | 147 - xtensor-0.13.2-0/xtensor/inst/include/xsimd/types/xsimd_types_include.hpp | 22 xtensor-0.13.2-0/xtensor/inst/include/xsimd/types/xsimd_utils.hpp | 8 xtensor-0.13.2-0/xtensor/inst/include/xsimd/xsimd.hpp | 4 xtensor-0.13.2-0/xtensor/inst/include/xtensor-r/rarray.hpp | 3 xtensor-0.13.2-0/xtensor/inst/include/xtensor-r/rcontainer.hpp | 27 xtensor-0.13.2-0/xtensor/inst/include/xtensor-r/rcpp_extensions.hpp | 3 xtensor-0.13.2-0/xtensor/inst/include/xtensor-r/roptional.hpp | 3 xtensor-0.13.2-0/xtensor/inst/include/xtensor-r/rtensor.hpp | 3 xtensor-0.13.2-0/xtensor/inst/include/xtensor-r/rvectorize.hpp | 3 xtensor-0.13.2-0/xtensor/inst/include/xtensor-r/xtensor_r_config.hpp | 7 xtensor-0.13.2-0/xtensor/inst/include/xtensor/xaccessible.hpp | 6 xtensor-0.13.2-0/xtensor/inst/include/xtensor/xaccumulator.hpp | 138 - xtensor-0.13.2-0/xtensor/inst/include/xtensor/xadapt.hpp | 150 + xtensor-0.13.2-0/xtensor/inst/include/xtensor/xarray.hpp | 4 xtensor-0.13.2-0/xtensor/inst/include/xtensor/xassign.hpp | 221 +- xtensor-0.13.2-0/xtensor/inst/include/xtensor/xaxis_iterator.hpp | 217 +- xtensor-0.13.2-0/xtensor/inst/include/xtensor/xaxis_slice_iterator.hpp |only xtensor-0.13.2-0/xtensor/inst/include/xtensor/xbroadcast.hpp | 42 xtensor-0.13.2-0/xtensor/inst/include/xtensor/xbuffer_adaptor.hpp | 295 ++- xtensor-0.13.2-0/xtensor/inst/include/xtensor/xbuilder.hpp | 377 ++-- xtensor-0.13.2-0/xtensor/inst/include/xtensor/xchunked_array.hpp |only xtensor-0.13.2-0/xtensor/inst/include/xtensor/xcomplex.hpp | 3 xtensor-0.13.2-0/xtensor/inst/include/xtensor/xcontainer.hpp | 87 xtensor-0.13.2-0/xtensor/inst/include/xtensor/xcsv.hpp | 69 xtensor-0.13.2-0/xtensor/inst/include/xtensor/xdynamic_view.hpp | 5 xtensor-0.13.2-0/xtensor/inst/include/xtensor/xeval.hpp | 121 + xtensor-0.13.2-0/xtensor/inst/include/xtensor/xexception.hpp | 105 - xtensor-0.13.2-0/xtensor/inst/include/xtensor/xexpression.hpp | 112 - xtensor-0.13.2-0/xtensor/inst/include/xtensor/xexpression_holder.hpp | 37 xtensor-0.13.2-0/xtensor/inst/include/xtensor/xexpression_traits.hpp | 57 xtensor-0.13.2-0/xtensor/inst/include/xtensor/xfixed.hpp | 264 +- xtensor-0.13.2-0/xtensor/inst/include/xtensor/xfunction.hpp | 152 - xtensor-0.13.2-0/xtensor/inst/include/xtensor/xfunctor_view.hpp | 39 xtensor-0.13.2-0/xtensor/inst/include/xtensor/xgenerator.hpp | 34 xtensor-0.13.2-0/xtensor/inst/include/xtensor/xhistogram.hpp | 245 +- xtensor-0.13.2-0/xtensor/inst/include/xtensor/xindex_view.hpp | 41 xtensor-0.13.2-0/xtensor/inst/include/xtensor/xinfo.hpp | 3 xtensor-0.13.2-0/xtensor/inst/include/xtensor/xio.hpp | 37 xtensor-0.13.2-0/xtensor/inst/include/xtensor/xiterable.hpp | 3 xtensor-0.13.2-0/xtensor/inst/include/xtensor/xiterator.hpp | 50 xtensor-0.13.2-0/xtensor/inst/include/xtensor/xjson.hpp | 55 xtensor-0.13.2-0/xtensor/inst/include/xtensor/xlayout.hpp | 10 xtensor-0.13.2-0/xtensor/inst/include/xtensor/xmanipulation.hpp | 420 +++- xtensor-0.13.2-0/xtensor/inst/include/xtensor/xmasked_view.hpp | 34 xtensor-0.13.2-0/xtensor/inst/include/xtensor/xmath.hpp | 941 +++++----- xtensor-0.13.2-0/xtensor/inst/include/xtensor/xmime.hpp | 13 xtensor-0.13.2-0/xtensor/inst/include/xtensor/xnoalias.hpp | 3 xtensor-0.13.2-0/xtensor/inst/include/xtensor/xnorm.hpp | 47 xtensor-0.13.2-0/xtensor/inst/include/xtensor/xnpy.hpp | 146 - xtensor-0.13.2-0/xtensor/inst/include/xtensor/xoffset_view.hpp | 3 xtensor-0.13.2-0/xtensor/inst/include/xtensor/xoperation.hpp | 94 xtensor-0.13.2-0/xtensor/inst/include/xtensor/xoptional.hpp | 175 + xtensor-0.13.2-0/xtensor/inst/include/xtensor/xoptional_assembly.hpp | 3 xtensor-0.13.2-0/xtensor/inst/include/xtensor/xoptional_assembly_base.hpp | 21 xtensor-0.13.2-0/xtensor/inst/include/xtensor/xoptional_assembly_storage.hpp | 4 xtensor-0.13.2-0/xtensor/inst/include/xtensor/xpad.hpp | 200 +- xtensor-0.13.2-0/xtensor/inst/include/xtensor/xrandom.hpp | 563 +++++ xtensor-0.13.2-0/xtensor/inst/include/xtensor/xreducer.hpp | 251 ++ xtensor-0.13.2-0/xtensor/inst/include/xtensor/xrepeat.hpp |only xtensor-0.13.2-0/xtensor/inst/include/xtensor/xscalar.hpp | 34 xtensor-0.13.2-0/xtensor/inst/include/xtensor/xsemantic.hpp | 58 xtensor-0.13.2-0/xtensor/inst/include/xtensor/xset_operation.hpp |only xtensor-0.13.2-0/xtensor/inst/include/xtensor/xshape.hpp | 89 xtensor-0.13.2-0/xtensor/inst/include/xtensor/xslice.hpp | 96 - xtensor-0.13.2-0/xtensor/inst/include/xtensor/xsort.hpp | 53 xtensor-0.13.2-0/xtensor/inst/include/xtensor/xstorage.hpp | 145 + xtensor-0.13.2-0/xtensor/inst/include/xtensor/xstrided_view.hpp | 106 - xtensor-0.13.2-0/xtensor/inst/include/xtensor/xstrided_view_base.hpp | 64 xtensor-0.13.2-0/xtensor/inst/include/xtensor/xstrides.hpp | 8 xtensor-0.13.2-0/xtensor/inst/include/xtensor/xtensor.hpp | 8 xtensor-0.13.2-0/xtensor/inst/include/xtensor/xtensor_config.hpp | 43 xtensor-0.13.2-0/xtensor/inst/include/xtensor/xtensor_forward.hpp | 14 xtensor-0.13.2-0/xtensor/inst/include/xtensor/xtensor_simd.hpp | 108 + xtensor-0.13.2-0/xtensor/inst/include/xtensor/xutils.hpp | 116 + xtensor-0.13.2-0/xtensor/inst/include/xtensor/xvectorize.hpp | 3 xtensor-0.13.2-0/xtensor/inst/include/xtensor/xview.hpp | 188 + xtensor-0.13.2-0/xtensor/inst/include/xtensor/xview_utils.hpp | 9 xtensor-0.13.2-0/xtensor/inst/include/xtl/xany.hpp | 15 xtensor-0.13.2-0/xtensor/inst/include/xtl/xbase64.hpp | 3 xtensor-0.13.2-0/xtensor/inst/include/xtl/xbasic_fixed_string.hpp | 74 xtensor-0.13.2-0/xtensor/inst/include/xtl/xclosure.hpp | 3 xtensor-0.13.2-0/xtensor/inst/include/xtl/xcomplex.hpp | 46 xtensor-0.13.2-0/xtensor/inst/include/xtl/xcomplex_sequence.hpp | 3 xtensor-0.13.2-0/xtensor/inst/include/xtl/xdynamic_bitset.hpp | 20 xtensor-0.13.2-0/xtensor/inst/include/xtl/xfunctional.hpp | 3 xtensor-0.13.2-0/xtensor/inst/include/xtl/xhalf_float.hpp |only xtensor-0.13.2-0/xtensor/inst/include/xtl/xhalf_float_impl.hpp |only xtensor-0.13.2-0/xtensor/inst/include/xtl/xhash.hpp | 85 xtensor-0.13.2-0/xtensor/inst/include/xtl/xhierarchy_generator.hpp | 3 xtensor-0.13.2-0/xtensor/inst/include/xtl/xiterator_base.hpp | 193 ++ xtensor-0.13.2-0/xtensor/inst/include/xtl/xjson.hpp | 24 xtensor-0.13.2-0/xtensor/inst/include/xtl/xmasked_value.hpp | 3 xtensor-0.13.2-0/xtensor/inst/include/xtl/xmasked_value_meta.hpp | 3 xtensor-0.13.2-0/xtensor/inst/include/xtl/xmeta_utils.hpp | 95 - xtensor-0.13.2-0/xtensor/inst/include/xtl/xmultimethods.hpp |only xtensor-0.13.2-0/xtensor/inst/include/xtl/xoptional.hpp | 3 xtensor-0.13.2-0/xtensor/inst/include/xtl/xoptional_meta.hpp | 7 xtensor-0.13.2-0/xtensor/inst/include/xtl/xoptional_sequence.hpp | 3 xtensor-0.13.2-0/xtensor/inst/include/xtl/xplatform.hpp |only xtensor-0.13.2-0/xtensor/inst/include/xtl/xsequence.hpp | 20 xtensor-0.13.2-0/xtensor/inst/include/xtl/xspan.hpp | 3 xtensor-0.13.2-0/xtensor/inst/include/xtl/xspan_impl.hpp | 8 xtensor-0.13.2-0/xtensor/inst/include/xtl/xsystem.hpp |only xtensor-0.13.2-0/xtensor/inst/include/xtl/xtl_config.hpp | 17 xtensor-0.13.2-0/xtensor/inst/include/xtl/xtype_traits.hpp | 88 xtensor-0.13.2-0/xtensor/inst/include/xtl/xvariant.hpp | 3 xtensor-0.13.2-0/xtensor/inst/include/xtl/xvariant_impl.hpp | 33 xtensor-0.13.2-0/xtensor/inst/include/xtl/xvisitor.hpp |only xtensor-0.13.2-0/xtensor/man/xtensor-package.Rd | 4 xtensor-0.13.2-0/xtensor/tools/vendor | 16 195 files changed, 8633 insertions(+), 2728 deletions(-)
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Title: Some Multiple Testing Procedures
Description: It's a collection of functions for Multiplicity Correction and Multiple Testing.
Author: livio finos
Maintainer: livio finos <livio@stat.unipd.it>
Diff between someMTP versions 1.4.1 dated 2013-11-04 and 1.4.1.1 dated 2021-03-01
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NAMESPACE | 7 +++++++ R/kfweOrd.R | 2 +- man/draw.Rd | 5 ----- 5 files changed, 15 insertions(+), 13 deletions(-)
Title: Population Genetics
Description: Classes and methods for handling genetic data. Includes
classes to represent genotypes and haplotypes at single markers
up to multiple markers on multiple chromosomes. Function
include allele frequencies, flagging homo/heterozygotes,
flagging carriers of certain alleles, estimating and testing
for Hardy-Weinberg disequilibrium, estimating and testing for
linkage disequilibrium, ...
Author: Gregory Warnes, with contributions from Gregor Gorjanc,
Friedrich Leisch, and Michael Man.
Maintainer: Gregory Warnes <greg@warnes.net>
Diff between genetics versions 1.3.8.1.2 dated 2019-04-22 and 1.3.8.1.3 dated 2021-03-01
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- data/gregorius.rda |binary man/depreciated.Rd | 7 ++----- man/write.pop.file.Rd | 10 +++++----- 5 files changed, 14 insertions(+), 17 deletions(-)
Title: Canonical Correlation Analysis
Description: Provides a set of functions that extend the
'cancor' function with new numerical and graphical outputs. It
also include a regularized extension of the canonical
correlation analysis to deal with datasets with more variables
than observations.
Author: Ignacio Gonz<e1>lez, S<e9>bastien D<e9>jean
Maintainer: S<e9>bastien D<e9>jean <sebastien.dejean@math.univ-toulouse.fr>
Diff between CCA versions 1.2 dated 2009-03-11 and 1.2.1 dated 2021-03-01
DESCRIPTION | 19 ++++++++++--------- MD5 |only NAMESPACE |only R/estim.regul.R | 2 +- data/nutrimouse.rda |binary man/estim.regul.Rd | 3 --- man/img.estim.regul.Rd | 7 +------ 7 files changed, 12 insertions(+), 19 deletions(-)
Title: Big Quadratic Inverse Covariance Estimation
Description: Use Newton's method, coordinate descent, and METIS clustering
to solve the L1 regularized Gaussian MLE inverse covariance
matrix estimation problem.
Author: Khalid B. Kunji [aut, cre],
Cho-Jui Hsieh [ctb],
Matyas A. Sustik [ctb],
Inderjit S. Dhillon [ctb],
Pradeep Ravikumar [ctb],
Tuo Zhao [ctb],
Xingguo Li [ctb],
Han Liu [ctb],
Kathryn Roeder [ctb],
John Lafferty [ctb],
Larry Wasserman [ctb],
George Karypis [ctb],
Melissa O'Neill [ctb],
Richard Henderson [ctb]
Maintainer: Khalid B. Kunji <kkunji@hbku.edu.qa>
Diff between BigQuic versions 1.1-9 dated 2020-05-15 and 1.1-9.1 dated 2021-03-01
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- build/partial.rdb |binary man/BigQuic-package.Rd | 6 +++--- 4 files changed, 10 insertions(+), 10 deletions(-)
Title: Power and Sample Size Calculation for Survival Analysis of
Epidemiological Studies
Description: Functions to calculate power and
sample size for testing main effect or interaction effect in
the survival analysis of epidemiological studies
(non-randomized studies), taking into account the
correlation between the covariate of the
interest and other covariates. Some calculations also take
into account the competing risks and stratified analysis.
This package also includes
a set of functions to calculate power and sample size
for testing main effect in the survival analysis of
randomized clinical trials and conditional logistic regression for nested case-control study.
Author: Weiliang Qiu, Jorge Chavarro, Ross Lazarus, Bernard Rosner, Jing Ma.
Maintainer: Weiliang Qiu <weiliang.qiu@gmail.com>
Diff between powerSurvEpi versions 0.1.1 dated 2021-01-08 and 0.1.3 dated 2021-03-01
DESCRIPTION | 12 ++++---- MD5 | 9 ++++-- NAMESPACE | 6 ++++ NEWS | 66 ++++++++++++++++++++++++-------------------- R/powerConLogistic.R |only man/powerConLogistic.bin.Rd |only man/powerConLogistic.con.Rd |only 7 files changed, 54 insertions(+), 39 deletions(-)
Title: Nonparametric Bootstrap and Permutation Tests
Description: Robust nonparametric bootstrap and permutation tests for location, correlation, and regression problems, as described in Helwig (2019a) <doi:10.1002/wics.1457> and Helwig (2019b) <doi:10.1016/j.neuroimage.2019.116030>. Univariate and multivariate tests are supported. For each problem, exact tests and Monte Carlo approximations are available. Five different nonparametric bootstrap confidence intervals are implemented. Parallel computing is implemented via the 'parallel' package.
Author: Nathaniel E. Helwig <helwig@umn.edu>
Maintainer: Nathaniel E. Helwig <helwig@umn.edu>
Diff between nptest versions 1.0-2 dated 2020-10-01 and 1.0-3 dated 2021-03-01
ChangeLog | 13 ++++ DESCRIPTION | 8 +- MD5 | 19 +++--- NAMESPACE | 2 R/np.reg.test.R | 12 ++-- R/psdinv.R |only R/rand.test.lm1.R | 97 +++++++++++++++++++++++---------- R/rand.test.lm2.R | 143 +++++++++++++++++++++++++++++++------------------ build/partial.rdb |binary man/np.reg.test.Rd | 5 + man/nptest-internal.Rd | 2 11 files changed, 201 insertions(+), 100 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-12-18 0.5
Title: Some 'MASS' Enhancements
Description: Some enhancements, extensions and additions
to the facilities of the recommended 'MASS' package
that are useful mainly for teaching purposes, with
more convenient default settings and user interfaces.
Key functions from 'MASS' are imported and re-exported
to avoid masking conflicts. In addition we provide
some additional functions mainly used to illustrate
coding paradigms and techniques, such as Gramm-Schmidt
orthogonalisation and generalised eigenvalue problems.
Author: Bill Venables
Maintainer: Bill Venables <bill.venables@gmail.com>
Diff between MASSExtra versions 1.0.2 dated 2020-12-11 and 1.1.1 dated 2021-03-01
MASSExtra-1.0.2/MASSExtra/inst/doc/rationale.pdf |only MASSExtra-1.1.1/MASSExtra/DESCRIPTION | 10 +- MASSExtra-1.1.1/MASSExtra/MD5 | 17 ++-- MASSExtra-1.1.1/MASSExtra/NAMESPACE | 9 ++ MASSExtra-1.1.1/MASSExtra/R/kde_2d_mass.R |only MASSExtra-1.1.1/MASSExtra/build/vignette.rds |binary MASSExtra-1.1.1/MASSExtra/inst/doc/rationale.R | 25 +++++-- MASSExtra-1.1.1/MASSExtra/inst/doc/rationale.Rmd | 76 +++++++++++++++++++--- MASSExtra-1.1.1/MASSExtra/inst/doc/rationale.html |only MASSExtra-1.1.1/MASSExtra/man/kde_1d.Rd |only MASSExtra-1.1.1/MASSExtra/man/kde_2d.Rd |only MASSExtra-1.1.1/MASSExtra/vignettes/rationale.Rmd | 76 +++++++++++++++++++--- 12 files changed, 180 insertions(+), 33 deletions(-)