Title: 'dplyr'-Like Syntax for Summary Statistics of Survey Data
Description: Use piping, verbs like 'group_by' and 'summarize', and other
'dplyr' inspired syntactic style when calculating summary statistics on survey
data using functions from the 'survey' package.
Author: Greg Freedman Ellis [aut, cre],
Thomas Lumley [ctb],
Tomasz Żółtak [ctb],
Ben Schneider [aut, ctb],
Pavel N. Krivitsky [ctb]
Maintainer: Greg Freedman Ellis <greg.freedman@gmail.com>
Diff between srvyr versions 1.0.0 dated 2020-12-01 and 1.0.1 dated 2021-03-28
DESCRIPTION | 9 MD5 | 18 - NEWS.md | 3 R/svy_context.R | 4 README.md | 32 - inst/doc/extending-srvyr.html | 360 ++++----------------- inst/doc/srvyr-database.html | 524 +++++++++---------------------- inst/doc/srvyr-vs-survey.html | 434 ++++++------------------- man/reexports.Rd | 2 tests/testthat/test_survey_mean_factor.r | 10 10 files changed, 404 insertions(+), 992 deletions(-)
Title: SIMulated Structural Equation Modeling
Description: Provides an easy framework for Monte Carlo simulation in structural equation modeling, which can be used for various purposes, such as such as model fit evaluation, power analysis, or missing data handling and planning.
Author: Sunthud Pornprasertmanit [aut],
Patrick Miller [aut],
Alexander Schoemann [aut] (<https://orcid.org/0000-0002-8479-8798>),
Terrence D. Jorgensen [aut, cre]
(<https://orcid.org/0000-0001-5111-6773>),
Corbin Quick [ctb]
Maintainer: Terrence D. Jorgensen <TJorgensen314@gmail.com>
Diff between simsem versions 0.5-15 dated 2020-02-12 and 0.5-16 dated 2021-03-28
simsem-0.5-15/simsem/inst/tests/test_adjust-methods.R |only simsem-0.5-16/simsem/DESCRIPTION | 18 simsem-0.5-16/simsem/MD5 | 37 - simsem-0.5-16/simsem/R/bind.R | 80 +- simsem-0.5-16/simsem/R/createData.R | 2 simsem-0.5-16/simsem/R/drawParam.R | 2 simsem-0.5-16/simsem/R/generate.R | 2 simsem-0.5-16/simsem/R/model.R | 75 +- simsem-0.5-16/simsem/R/sim.R | 65 -- simsem-0.5-16/simsem/R/summary-methods.R | 8 simsem-0.5-16/simsem/R/summarySimResult.R | 7 simsem-0.5-16/simsem/inst/tests/test_analyze.R | 24 simsem-0.5-16/simsem/inst/tests/test_bind.R | 20 simsem-0.5-16/simsem/inst/tests/test_drawParam.R | 103 +-- simsem-0.5-16/simsem/inst/tests/test_global.R | 538 ------------------ simsem-0.5-16/simsem/inst/tests/test_missing.R | 21 simsem-0.5-16/simsem/inst/tests/test_model.R | 39 - simsem-0.5-16/simsem/man/SimResult-class.Rd | 4 simsem-0.5-16/simsem/man/bind.Rd | 136 ++-- simsem-0.5-16/simsem/man/sim.Rd | 50 - 20 files changed, 331 insertions(+), 900 deletions(-)
Title: Get Images Out of DICOM Format Quickly
Description: Provides tools to sort DICOM-format medical image files, and
convert them to NIfTI-1 format.
Author: Jon Clayden [aut, cre] (<https://orcid.org/0000-0002-6608-0619>),
Chris Rorden [aut],
Martin J Fiedler [cph],
Cong Xu [cph],
Pascal Gloor [cph]
Maintainer: Jon Clayden <code@clayden.org>
Diff between divest versions 0.9.0 dated 2020-09-04 and 0.10.0 dated 2021-03-28
DESCRIPTION | 8 MD5 | 24 configure | 22 configure.ac | 4 src/ImageList.h | 59 + src/Makevars.in | 2 src/dcm2niix/nifti1_io_core.cpp | 12 src/dcm2niix/nifti1_io_core.h | 1 src/dcm2niix/nii_dicom.cpp | 952 ++++++++++++++++++------- src/dcm2niix/nii_dicom.h | 31 src/dcm2niix/nii_dicom_batch.cpp | 1485 ++++++++++++++++++++++++++++----------- src/dcm2niix/nii_dicom_batch.h | 2 tests/testthat/attributes.rds |binary 13 files changed, 1935 insertions(+), 667 deletions(-)
Title: Managing and Visualizing Brain Surface Data
Description: Provides high-level access to neuroimaging data from standard software packages like 'FreeSurfer' <http://freesurfer.net/> on the level of subjects and groups. Load morphometry data, surfaces and brain parcellations based on atlases. Mask data using labels, load data for specific atlas regions only, and visualize data and statistical results directly in 'R'.
Author: Tim Schäfer [aut, cre] (<https://orcid.org/0000-0002-3683-8070>)
Maintainer: Tim Schäfer <ts+code@rcmd.org>
Diff between fsbrain versions 0.4.1 dated 2021-01-20 and 0.4.2 dated 2021-03-28
DESCRIPTION | 7 ++---- MD5 | 18 ++++++++-------- R/brainview_magick.R | 8 ++++--- R/vis_surface_background.R | 8 +++---- inst/doc/fsbrain_faq.R | 8 +++++++ inst/doc/fsbrain_faq.Rmd | 27 ++++++++++++++++++++++-- inst/doc/fsbrain_faq.html | 20 ++++++++++++++++- man/vis.export.from.coloredmeshes.Rd | 5 +++- tests/testthat/test-vis.R | 39 +++++++++++++++++++++++++++++++++++ vignettes/fsbrain_faq.Rmd | 27 ++++++++++++++++++++++-- 10 files changed, 140 insertions(+), 27 deletions(-)
Title: The Gaussian Covariate Method for Variable Selection
Description: Given the standard linear model the traditional way of deciding whether to include the jth covariate is to apply the F-test to decide whether the corresponding beta coefficient is zero. The Gaussian covariate method is completely different. The question as to whether the beta coefficient is or is not zero is replaced by the question as to whether the covariate is better or worse than i.i.d. Gaussian noise. The P-value for the covariate is the probability that Gaussian noise is better. Surprisingly this can be given exactly and it is the same a the P-value for the classical model based on the F-distribution. The Gaussian covariate P-value is model free, it is the same for any data set. Using the idea it is possible to do covariate selection for a small number of covariates 25 by considering all subsets. Post selection inference causes no problems as the P-values hold whatever the data. The idea extends to stepwise regression again with exact probabilities. In the simplest version the only parameter is a specified cut-off P-value which can be interpreted as the probability of a false positive being included in the final selection. For more information see the website below and the accompanying papers: L. Davies and L. Duembgen, "Covariate Selection Based on a Model-free Approach to Linear Regression with Exact Probabilities", 2020, <arXiv:1906.01990>. L. Davies, "Lasso, Knockoff and Gaussian covariates: A comparison", 2018, <arXiv:1807.09633>.
Author: Laurie Davies [aut, cre]
Maintainer: Laurie Davies <laurie.davies@uni-due.de>
Diff between gausscov versions 0.0.13 dated 2021-02-26 and 0.1.0 dated 2021-03-28
DESCRIPTION | 8 ++++---- MD5 | 38 +++++++++++++++++++++----------------- R/f1st.R | 11 ++++------- R/f2st.R | 5 ++--- R/fgeninter.R | 14 ++++++++++++-- R/fgr1st.R | 7 +++---- R/fgr2st.R | 28 +++++++++++++--------------- R/fmch.R | 3 +-- R/fpval.R | 10 ++++++---- R/fsimords.R | 8 ++++---- data/dentx.rda |only data/denty.rda |only man/dentx.Rd |only man/denty.Rd |only man/f1st.Rd | 4 +--- man/f2st.Rd | 4 +--- man/fgeninter.Rd | 6 ++++-- man/fgr1st.Rd | 4 +--- man/fgr2st.Rd | 4 +--- man/fmch.Rd | 4 +--- man/fpval.Rd | 6 ++++-- src/gaucov.f | 24 +++++++++--------------- 22 files changed, 92 insertions(+), 96 deletions(-)
Title: Conventional and Fuzzy Data Envelopment Analysis
Description: Set of functions for Data Envelopment Analysis. It runs both classic and fuzzy DEA models.See: Banker, R.; Charnes, A.; Cooper, W.W. (1984). <doi:10.1287/mnsc.30.9.1078>, Charnes, A.; Cooper, W.W.; Rhodes, E. (1978). <doi:10.1016/0377-2217(78)90138-8> and Charnes, A.; Cooper, W.W.; Rhodes, E. (1981). <doi:10.1287/mnsc.27.6.668>.
Author: Vicente Coll-Serrano, Vicente Bolos, Rafael Benitez Suarez <rabesua@uv.es>
Maintainer: Vicente Bolos <vicente.bolos@uv.es>
Diff between deaR versions 1.2.2 dated 2020-12-11 and 1.2.3 dated 2021-03-28
DESCRIPTION | 8 MD5 | 133 +++--- NAMESPACE | 2 R/bootstrap_basic.R | 2 R/cross_efficiency.R | 6 R/cross_efficiency_fuzzy.R | 8 R/is.friends.R | 2 R/maximal_friends.R | 2 R/model_additive.R | 6 R/model_addsupereff.R | 2 R/model_multiplier.R | 10 R/model_nonradial.R | 8 R/model_profit.R | 2 R/model_sbmeff.R | 6 R/model_sbmsupereff.R | 6 R/modelfuzzy_guotanaka.R | 6 R/modelfuzzy_kaoliu.R | 26 - R/modelfuzzy_possibilistic.R | 6 R/plot.dea.R | 798 ++++++++++++++++++++-------------------- R/plot.deafuzzy.R | 8 R/read_data.R | 562 ++++++++++++++-------------- R/read_data_fuzzy.R | 12 R/summary.deafuzzy.R | 2 R/undesirable_basic.R | 8 build |only data/Doyle_Green_1994.RData |binary man/Coelli_1998.Rd | 6 man/Coll_Blasco_2006.Rd | 6 man/Departments.Rd | 6 man/Doyle_Green_1994.Rd | 6 man/Economy.Rd | 6 man/EconomyLong.Rd | 6 man/Electric_plants.Rd | 6 man/Fortune500.Rd | 6 man/Fried1993.Rd | 6 man/Golany_Roll_1989.Rd | 6 man/Grifell_Lovell_1999.Rd | 6 man/Guo_Tanaka_2001.Rd | 6 man/Hotels.Rd | 6 man/Hua_Bian_2007.Rd | 6 man/Kao_Liu_2003.Rd | 6 man/Leon2003.Rd | 6 man/Libraries.Rd | 6 man/Lim_Zhu_2015.Rd | 6 man/PFT1981.Rd | 6 man/Power_plants.Rd | 6 man/Ruggiero2007.Rd | 6 man/Supply_Chain.Rd | 6 man/Tone2001.Rd | 6 man/Tone2003.Rd | 6 man/bootstrap_basic.Rd | 2 man/cross_efficiency.Rd | 6 man/cross_efficiency_fuzzy.Rd | 8 man/efficiencies.Rd | 30 - man/is.friends.Rd | 2 man/maximal_friends.Rd | 2 man/model_additive.Rd | 6 man/model_addsupereff.Rd | 2 man/model_multiplier.Rd | 10 man/model_nonradial.Rd | 8 man/model_profit.Rd | 2 man/model_sbmeff.Rd | 6 man/model_sbmsupereff.Rd | 6 man/modelfuzzy_guotanaka.Rd | 6 man/modelfuzzy_possibilistic.Rd | 6 man/read_data.Rd | 12 man/read_data_fuzzy.Rd | 12 man/summary.dea_fuzzy.Rd | 2 68 files changed, 976 insertions(+), 927 deletions(-)
Title: A Poor Man's Dependency Free Recreation of 'dplyr'
Description: A replication of key functionality from 'dplyr' and the wider 'tidyverse' using only 'base'.
Author: Nathan Eastwood [aut, cre]
Maintainer: Nathan Eastwood <nathan.eastwood@icloud.com>
Diff between poorman versions 0.2.4 dated 2020-11-27 and 0.2.5 dated 2021-03-28
DESCRIPTION | 8 MD5 | 106 ++++---- NAMESPACE | 43 ++- NEWS.md | 22 + R/across.R | 42 +++ R/arrange.R | 42 ++- R/bind.R | 24 - R/context.R | 1 R/cumulative.R |only R/distinct.R | 5 R/filter.R | 47 +++ R/group_by.R | 132 +++------- R/group_metadata.R | 26 -- R/group_split.R | 2 R/group_utils.R |only R/joins.R | 2 R/joins_filtering.R | 2 R/lang.R | 13 + R/mutate.R | 91 ++++--- R/nest_by.R | 4 R/print.R |only R/reconstruct.R |only R/rename.R | 2 R/rownames.R | 63 ++++- R/select_positions.R | 1 R/slice.R | 12 R/summarise.R | 94 ++++++- R/transmute.R | 2 R/ungroup.R |only R/unite.R | 4 R/utils.R | 16 + R/with_groups.R | 5 README.md | 18 - inst/doc/faq.html | 414 +++++++++++++-------------------- inst/tinytest/test_across.R | 51 +++- inst/tinytest/test_arrange.R | 60 ++++ inst/tinytest/test_context.R | 14 - inst/tinytest/test_count_tally.R | 2 inst/tinytest/test_cumulative.R |only inst/tinytest/test_empty_groups.R |only inst/tinytest/test_filter.R | 31 ++ inst/tinytest/test_group_by.R | 98 +++++++ inst/tinytest/test_group_metadata.R | 8 inst/tinytest/test_mutate.R | 26 ++ inst/tinytest/test_reconstruct_attrs.R |only inst/tinytest/test_rownames.R | 56 +++- inst/tinytest/test_select_positions.R | 12 inst/tinytest/test_summarise.R | 50 +++ inst/tinytest/test_transmute.R | 10 inst/tinytest/test_with_groups.R | 2 man/across.Rd | 19 + man/cummean.Rd |only man/filter.Rd | 5 man/group_by.Rd | 7 man/group_by_drop_default.Rd |only man/nest_by.Rd | 2 man/rownames.Rd | 39 ++- man/summarise.Rd | 54 +++- man/with_groups.Rd | 2 59 files changed, 1204 insertions(+), 587 deletions(-)
Title: Testing, Monitoring, and Dating Structural Changes: C++ Version
Description: A fast implementation with additional experimental features for
testing, monitoring and dating structural changes in (linear)
regression models. 'strucchangeRcpp' features tests/methods from
the generalized fluctuation test framework as well as from
the F test (Chow test) framework. This includes methods to
fit, plot and test fluctuation processes (e.g. cumulative/moving
sum, recursive/moving estimates) and F statistics, respectively.
These methods are described in Zeileis et al. (2002)
<doi:10.18637/jss.v007.i02>.
Finally, the breakpoints in regression models with structural
changes can be estimated together with confidence intervals,
and their magnitude as well as the model fit can be evaluated
using a variety of statistical measures.
Author: Dainius Masiliunas [aut, cre] (<https://orcid.org/0000-0001-5654-1277>),
Achim Zeileis [aut] (<https://orcid.org/0000-0003-0918-3766>),
Marius Appel [aut],
Friedrich Leisch [aut],
Kurt Hornik [aut],
Christian Kleiber [aut],
Andrei Mirt [ctb] (<https://orcid.org/0000-0003-3654-2090>),
Bruce Hansen [ctb],
Edgar C. Merkle [ctb]
Maintainer: Dainius Masiliunas <pastas4@gmail.com>
Diff between strucchangeRcpp versions 1.5-3-1.0.0 dated 2021-03-24 and 1.5-3-1.0.1 dated 2021-03-28
DESCRIPTION | 9 ++++---- MD5 | 16 +++++++-------- NEWS | 4 +++ R/RcppExports.R | 20 +++++++++---------- inst/doc/strucchange-intro.pdf |binary src/RcppExports.cpp | 42 ++++++++++++++++++++--------------------- src/breakpoints.cpp | 2 - src/efp.cpp | 12 +++++------ src/fstats.cpp | 3 -- 9 files changed, 55 insertions(+), 53 deletions(-)
More information about strucchangeRcpp at CRAN
Permanent link
Title: Work with Open Road Traffic Casualty Data from Great Britain
Description: Tools to help download, process and analyse the UK road collision data collected using the
'STATS19' form. The data are provided as 'CSV' files with detailed road safety data about the
circumstances of car crashes and other incidents on the roads resulting in
casualties in Great Britain from 1979, the types
(including make and model) of vehicles involved and the consequential casualties. The
statistics relate only to personal casualties on public roads that are reported
to the police, and subsequently recorded, using the 'STATS19' accident reporting form. See
the Department for Transport website
<https://data.gov.uk/dataset/cb7ae6f0-4be6-4935-9277-47e5ce24a11f/road-safety-data> for more
information on these data.
Author: Robin Lovelace [aut, cre] (<https://orcid.org/0000-0001-5679-6536>),
Malcolm Morgan [aut] (<https://orcid.org/0000-0002-9488-9183>),
Layik Hama [aut] (<https://orcid.org/0000-0003-1912-4890>),
Mark Padgham [aut] (<https://orcid.org/0000-0003-2172-5265>),
David Ranzolin [rev],
Adam Sparks [rev, ctb] (<https://orcid.org/0000-0002-0061-8359>),
Ivo Wengraf [ctb],
RAC Foundation [fnd]
Maintainer: Robin Lovelace <rob00x@gmail.com>
Diff between stats19 versions 1.4.0 dated 2021-03-15 and 1.4.1 dated 2021-03-28
DESCRIPTION | 8 ++++---- MD5 | 16 +++++++++------- NAMESPACE | 1 + NEWS.md | 6 ++++++ R/ulez.R |only R/utils.R | 4 +++- inst/doc/blog.html | 4 ++-- inst/doc/stats19-training.html | 4 +--- inst/doc/stats19.html | 4 ++-- man/get_ULEZ.Rd |only 10 files changed, 28 insertions(+), 19 deletions(-)
Title: Access the 'Geographic Name Resolution Service'
Description: Provides tools for interacting with the 'geographic name resolution service' ('GNRS') API <https://github.com/ojalaquellueva/gnrs> and associated functionality. The 'GNRS' is a batch application for resolving & standardizing political division names against standard name in the geonames database <http://www.geonames.org/>. The 'GNRS' resolves political division names at three levels: country, state/province and county/parish. Resolution is performed in a series of steps, beginning with direct matching to standard names, followed by direct matching to alternate names in different languages, followed by direct matching to standard codes (such as ISO and FIPS codes). If direct matching fails, the 'GNRS' attempts to match to standard and then alternate names using fuzzy matching, but does not perform fuzzing matching of political division codes. The 'GNRS' works down the political division hierarchy, stopping at the current level if all matches fail. In other words, if a country cannot be matched, the 'GNRS' does not attempt to match state or county.
Author: Brad Boyle [aut],
Brian Maitner [aut, cre]
Maintainer: Brian Maitner <bmaitner@gmail.com>
Diff between GNRS versions 0.1.1 dated 2021-01-22 and 0.2.0 dated 2021-03-28
GNRS-0.1.1/GNRS/inst/extdata |only GNRS-0.2.0/GNRS/DESCRIPTION | 10 GNRS-0.2.0/GNRS/MD5 | 53 ++-- GNRS-0.2.0/GNRS/NAMESPACE | 3 GNRS-0.2.0/GNRS/NEWS | 7 GNRS-0.2.0/GNRS/R/data.R |only GNRS-0.2.0/GNRS/R/description.R | 2 GNRS-0.2.0/GNRS/R/gnrs.R | 29 +- GNRS-0.2.0/GNRS/R/gnrs_get_counties.R |only GNRS-0.2.0/GNRS/R/gnrs_get_countries.R |only GNRS-0.2.0/GNRS/R/gnrs_get_states.R |only GNRS-0.2.0/GNRS/R/gnrs_super_simple.R | 4 GNRS-0.2.0/GNRS/R/gnrs_template.R | 2 GNRS-0.2.0/GNRS/R/gnrs_version.R | 5 GNRS-0.2.0/GNRS/README.md |only GNRS-0.2.0/GNRS/build/vignette.rds |binary GNRS-0.2.0/GNRS/data |only GNRS-0.2.0/GNRS/inst/doc/GNRS.R | 24 +- GNRS-0.2.0/GNRS/inst/doc/GNRS.Rmd | 33 +- GNRS-0.2.0/GNRS/inst/doc/GNRS.html | 355 +++++------------------------- GNRS-0.2.0/GNRS/man/GNRS.Rd | 8 GNRS-0.2.0/GNRS/man/GNRS_get_counties.Rd |only GNRS-0.2.0/GNRS/man/GNRS_get_countries.Rd |only GNRS-0.2.0/GNRS/man/GNRS_get_states.Rd |only GNRS-0.2.0/GNRS/man/GNRS_super_simple.Rd | 4 GNRS-0.2.0/GNRS/man/GNRS_template.Rd | 2 GNRS-0.2.0/GNRS/man/GNRS_version.Rd | 2 GNRS-0.2.0/GNRS/man/gnrs_testfile.Rd |only GNRS-0.2.0/GNRS/tests |only GNRS-0.2.0/GNRS/vignettes/GNRS.Rmd | 33 +- 30 files changed, 192 insertions(+), 384 deletions(-)
Title: Gaussian Process Fitting
Description: Fits a Gaussian process model to data. Gaussian processes
are commonly used in computer experiments to fit an interpolating model.
The model is stored as an 'R6' object and can be easily updated with new
data. There are options to run in parallel (not for Windows), and 'Rcpp'
has been used to speed up calculations. Other R packages that perform
similar calculations include 'laGP', 'DiceKriging', 'GPfit', and 'mlegp'.
Author: Collin Erickson
Maintainer: Collin Erickson <collinberickson@gmail.com>
Diff between GauPro versions 0.2.2 dated 2017-09-11 and 0.2.3 dated 2021-03-28
GauPro-0.2.2/GauPro/tools/README-unnamed-chunk-2-1.png |only GauPro-0.2.2/GauPro/tools/README-unnamed-chunk-3-1.png |only GauPro-0.2.2/GauPro/tools/README-unnamed-chunk-4-1.png |only GauPro-0.2.2/GauPro/tools/README-unnamed-chunk-4-2.png |only GauPro-0.2.3/GauPro/DESCRIPTION | 12 GauPro-0.2.3/GauPro/MD5 | 211 GauPro-0.2.3/GauPro/NAMESPACE | 81 GauPro-0.2.3/GauPro/NEWS.md | 42 GauPro-0.2.3/GauPro/R/GauPro_Gauss.R | 812 +- GauPro-0.2.3/GauPro/R/GauPro_Gauss_LOO.R |only GauPro-0.2.3/GauPro/R/GauPro_S3.R | 166 GauPro-0.2.3/GauPro/R/GauPro_base.R | 1072 ++- GauPro-0.2.3/GauPro/R/GauPro_selector.R | 37 GauPro-0.2.3/GauPro/R/Gaussian_deviance.R | 300 - GauPro-0.2.3/GauPro/R/Gaussian_hessian.R | 180 GauPro-0.2.3/GauPro/R/RcppExports.R | 423 + GauPro-0.2.3/GauPro/R/corr.R | 130 GauPro-0.2.3/GauPro/R/grad_share.R | 176 GauPro-0.2.3/GauPro/R/kernel_Exponential.R | 273 GauPro-0.2.3/GauPro/R/kernel_Gaussian.R | 538 + GauPro-0.2.3/GauPro/R/kernel_Matern32.R | 288 - GauPro-0.2.3/GauPro/R/kernel_Matern52.R | 294 - GauPro-0.2.3/GauPro/R/kernel_PowerExp.R |only GauPro-0.2.3/GauPro/R/kernel_RatQuad.R | 557 +- GauPro-0.2.3/GauPro/R/kernel_Triangle.R |only GauPro-0.2.3/GauPro/R/kernel_White.R |only GauPro-0.2.3/GauPro/R/kernel_base.R | 84 GauPro-0.2.3/GauPro/R/kernel_beta.R | 471 - GauPro-0.2.3/GauPro/R/kernel_model.R | 2761 ++++++---- GauPro-0.2.3/GauPro/R/kernel_model_LOO.R |only GauPro-0.2.3/GauPro/R/kernel_periodic.R | 682 +- GauPro-0.2.3/GauPro/R/kernel_product.R | 411 - GauPro-0.2.3/GauPro/R/kernel_sum.R | 319 - GauPro-0.2.3/GauPro/R/sqrt_matrix.R |only GauPro-0.2.3/GauPro/R/transformations.R | 8 GauPro-0.2.3/GauPro/R/trend_0.R | 191 GauPro-0.2.3/GauPro/R/trend_LM.R | 226 GauPro-0.2.3/GauPro/R/trend_base.R | 71 GauPro-0.2.3/GauPro/R/trend_constant.R | 207 GauPro-0.2.3/GauPro/README.md | 215 GauPro-0.2.3/GauPro/build/vignette.rds |binary GauPro-0.2.3/GauPro/inst/doc/CrossValidationErrorCorrection.R | 57 GauPro-0.2.3/GauPro/inst/doc/CrossValidationErrorCorrection.Rmd | 301 - GauPro-0.2.3/GauPro/inst/doc/CrossValidationErrorCorrection.html | 397 - 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Title: Field Observation Quick Analysis Toolkit
Description: Tools for quickly processing and analyzing
field observation data and air quality data. This
tools contain functions that facilitate analysis
in atmospheric chemistry (especially in ozone
pollution). Some functions of time series are also
applicable to other fields. For detail please view
homepage<https://github.com/tianshu129/foqat>.
Scientific Reference:
1. The Hydroxyl Radical (OH) Reactivity: Roger Atkinson and Janet Arey (2003) <doi:10.1021/cr0206420>.
2. Ozone Formation Potential (OFP): <https://ww3.arb.ca.gov/regact/2009/mir2009/mir10.pdf>.
3. TUV model: <https://www2.acom.ucar.edu/modeling/tropospheric-ultraviolet-and-visible-tuv-radiation-model>.
Author: Tianshu Chen
Maintainer: Tianshu Chen <tianshu129@163.com>
Diff between foqat versions 1.6.2 dated 2021-03-18 and 1.6.4 dated 2021-03-28
DESCRIPTION | 6 +++--- MD5 | 18 +++++++++--------- NAMESPACE | 1 + R/dm8n.R | 1 + R/loh.R | 35 ++++++++++++++++++++++++++++++++--- R/ofp.R | 2 +- R/sysdata.rda |binary R/tuv.R | 1 + R/vocct.R | 4 ++-- man/tuv.Rd | 1 + 10 files changed, 51 insertions(+), 18 deletions(-)
Title: Tidy Characterizations of Model Performance
Description: Tidy tools for quantifying how well model fits to a
data set such as confusion matrices, class probability curve
summaries, and regression metrics (e.g., RMSE).
Author: Max Kuhn [aut],
Davis Vaughan [aut, cre],
RStudio [cph]
Maintainer: Davis Vaughan <davis@rstudio.com>
Diff between yardstick versions 0.0.7 dated 2020-07-13 and 0.0.8 dated 2021-03-28
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Title: Linear Networks Functionality of the 'spatstat' Family
Description: Defines types of spatial data on a linear network
and provides functionality for geometrical operations,
data analysis and modelling of data on a linear network,
in the 'spatstat' family of packages.
Contains definitions and support for linear networks, including creation of networks, geometrical measurements, topological connectivity, geometrical operations such as inserting and deleting vertices, intersecting a network with another object, and interactive editing of networks.
Data types defined on a network include point patterns, pixel images, functions, and tessellations.
Exploratory methods include kernel estimation of intensity on a network, K-functions and pair correlation functions on a network, simulation envelopes, nearest neighbour distance and empty space distance, relative risk estimation with cross-validated bandwidth selection. Formal hypothesis tests of random pattern (chi-squared, Kolmogorov-Smirnov, Monte Carlo, Diggle-Cressie-Loosmore-Ford, Dao-Genton, two-stage Monte Carlo) and tests for covariate effects (Cox-Berman-Waller-Lawson, Kolmogorov-Smirnov, ANOVA) are also supported.
Parametric models can be fitted to point pattern data using the function lppm() similar to glm(). Only Poisson models are implemented so far. Models may involve dependence on covariates and dependence on marks. Models are fitted by maximum likelihood.
Fitted point process models can be simulated, automatically. Formal hypothesis tests of a fitted model are supported (likelihood ratio test, analysis of deviance, Monte Carlo tests) along with basic tools for model selection (stepwise(), AIC()) and variable selection (sdr). Tools for validating the fitted model include simulation envelopes, residuals, residual plots and Q-Q plots, leverage and influence diagnostics, partial residuals, and added variable plots.
Random point patterns on a network can be generated using a variety of models.
Author: Adrian Baddeley [aut, cre],
Rolf Turner [aut],
Ege Rubak [aut],
Ottmar Cronie [ctb],
Tilman Davies [ctb],
Greg McSwiggan [ctb],
Suman Rakshit [ctb]
Maintainer: Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>
Diff between spatstat.linnet versions 2.0-0 dated 2021-03-18 and 2.1-1 dated 2021-03-28
spatstat.linnet-2.0-0/spatstat.linnet/man/densityHeatlpp.Rd |only spatstat.linnet-2.1-1/spatstat.linnet/DESCRIPTION | 21 - spatstat.linnet-2.1-1/spatstat.linnet/MD5 | 23 - spatstat.linnet-2.1-1/spatstat.linnet/NAMESPACE | 4 spatstat.linnet-2.1-1/spatstat.linnet/NEWS | 37 ++ spatstat.linnet-2.1-1/spatstat.linnet/R/density.lpp.R | 172 ++++++---- spatstat.linnet-2.1-1/spatstat.linnet/R/randomlpp.R | 32 + spatstat.linnet-2.1-1/spatstat.linnet/inst/doc/packagesizes.txt | 3 spatstat.linnet-2.1-1/spatstat.linnet/man/density.lpp.Rd | 11 spatstat.linnet-2.1-1/spatstat.linnet/man/densityEqualSplit.Rd | 22 + spatstat.linnet-2.1-1/spatstat.linnet/man/densityHeat.lpp.Rd |only spatstat.linnet-2.1-1/spatstat.linnet/man/densityQuick.lpp.Rd | 9 spatstat.linnet-2.1-1/spatstat.linnet/man/rjitterlpp.Rd |only spatstat.linnet-2.1-1/spatstat.linnet/tests/testsL.R | 12 14 files changed, 257 insertions(+), 89 deletions(-)
More information about spatstat.linnet at CRAN
Permanent link
Title: Geographic Profiling Methods for Serial Crime Analysis
Description: An implementation of functions for the analysis of serial crime
incidents. The package implements algorithms for the geographical profiling
of serial incidents in attempt to prioritize the area in which the anchor
point or home base of the perpetrator is located. The geographic profiling
methods in the package are implemented based upon the 'Dragnet' software
by Canter, Coffey, Huntley, and Missen (2000) <doi:10.1023/A:1007551316253>,
the 'CrimeStat' software by Levine (2013)
<https://nij.ojp.gov/topics/articles/crimestat-spatial-statistics-program-analysis-crime-incident-locations>,
and the criminal geographic targeting model outlined in Rossmo (2000, ISBN:978-0849381294)
and Rossmo (1995) <http://summit.sfu.ca/item/6820>.
Author: Jamie Spaulding and Keith Morris
Maintainer: Jamie Spaulding <jspaulding02@hamline.edu>
Diff between rgeoprofile versions 0.2.0 dated 2020-05-28 and 0.2.1 dated 2021-03-28
DESCRIPTION | 10 +++++----- MD5 | 18 +++++++++--------- NAMESPACE | 6 +++--- NEWS.md | 8 ++++++++ R/cgt_profile.R | 2 +- R/circle_center.R | 10 +++++----- inst/doc/rgeoprofile.R | 4 ++-- inst/doc/rgeoprofile.Rmd | 4 ++-- inst/doc/rgeoprofile.html | 8 ++++---- vignettes/rgeoprofile.Rmd | 4 ++-- 10 files changed, 41 insertions(+), 33 deletions(-)
Title: Protein Binding Models
Description: Binding models which are useful when analysing protein-ligand interactions by techniques such as Biolayer Interferometry (BLI) or Surface Plasmon Resonance (SPR). Naman B. Shah, Thomas M. Duncan (2014) <doi:10.3791/51383>. Hoang H. Nguyen et al. (2015) <doi:10.3390/s150510481>. After initial binding parameters are known, binding curves can be simulated and parameters can be varied. The models within this package may also be used to fit a curve to measured binding data using non-linear regression.
Author: Jonathan Davies [aut, cre] (<https://orcid.org/0000-0002-4986-8594>)
Maintainer: Jonathan Davies <jonathanrd@gmail.com>
Diff between pbm versions 1.1.0 dated 2018-03-05 and 1.2.1 dated 2021-03-28
DESCRIPTION | 19 - MD5 | 26 + NAMESPACE | 2 NEWS.md | 4 R/binding.r | 27 + README.md |only build/vignette.rds |binary inst/doc/vignette.R | 80 +++-- inst/doc/vignette.Rmd | 101 +++++- inst/doc/vignette.html | 683 ++++++++++++++++++++++++++++++---------------- man/binding1to1.Rd | 3 man/binding2to1.Rd | 16 - man/req.Rd |only man/tteq.Rd |only tests/testthat/test_req.r |only vignettes/vignette.Rmd | 101 +++++- 16 files changed, 741 insertions(+), 321 deletions(-)
Title: Model-Averaged Tail Area (MATA) Confidence Interval and
Distribution
Description: Calculates Model-Averaged Tail Area Wald
(MATA-Wald) confidence intervals, and MATA-Wald confidence densities
and distributions, which are constructed using single-model
frequentist estimators and model weights. See Turek and Fletcher
(2012) <doi:10.1016/j.csda.2012.03.002> and Fletcher et al (2019)
<doi:10.1007/s10651-019-00432-5> for details.
Author: Daniel Turek [aut, cre]
Maintainer: Daniel Turek <danielturek@gmail.com>
Diff between MATA versions 0.7.0 dated 2021-03-21 and 0.7.1 dated 2021-03-28
DESCRIPTION | 7 +++---- MD5 | 6 +++--- R/functions.R | 6 +++--- man/MATA.Rd | 6 +++--- 4 files changed, 12 insertions(+), 13 deletions(-)
Title: Functions for Behavioral Science Researchers
Description: Miscellaneous functions to simplify and expedite
analyses of experimental data. Examples include a function
that plots sample means of groups in a factorial experimental design,
a function that conducts robust regressions with bootstrapped samples,
and a function that conducts robust two-way analysis of variance.
Selected References:
Canty & Ripley (2021) <https://CRAN.R-project.org/package=boot>.
Cohen (1988) <doi:10.4324/9780203771587>.
Dinno (2018) <https://CRAN.R-project.org/package=paran>.
Dowle et al. (2021) <https://CRAN.R-project.org/package=data.table>.
Edwards et al. (2020) <https://CRAN.R-project.org/package=lemon>.
Fox et al. (2020) <https://CRAN.R-project.org/package=car>.
Hester et al. (2020) <https://CRAN.R-project.org/package=remotes>.
Ioannidis (2005) <doi:10.1371/journal.pmed.0020124>
Kim (2021) <doi:10.5281/zenodo.4641436>.
Kim (2020) <https://CRAN.R-project.org/package=ezr>.
Long (2020) <https://CRAN.R-project.org/package=interactions>.
Mair & Wilcox (2021) <https://CRAN.R-project.org/package=WRS2>.
Pasek et al. (2020) <https://CRAN.R-project.org/package=weights>.
Simmons et al. (2011) <doi:10.1177/0956797611417632>.
Tingley et al. (2019) <https://CRAN.R-project.org/package=mediation>.
Torchiano (2020) <https://CRAN.R-project.org/package=effsize>.
Wickham et al. (2020) <https://CRAN.R-project.org/package=ggplot2>.
Wilke (2021) <https://CRAN.R-project.org/package=ggridges>.
Author: Jin Kim [aut, cre] (<https://orcid.org/0000-0002-5013-3958>)
Maintainer: Jin Kim <jin.m.kim@yale.edu>
Diff between kim versions 0.2.133 dated 2021-03-14 and 0.2.172 dated 2021-03-28
DESCRIPTION | 40 ++++-- MD5 | 169 +++++++++++++------------ NAMESPACE | 135 ++++++++++---------- NEWS.md | 6 R/cohen_d_from_cohen_textbook.R | 3 R/compare_datasets.R | 7 - R/compare_groups.R | 6 R/desc_stats.R | 9 - R/desc_stats_by_group.R | 5 R/floodlight_2_by_continuous.R | 9 + R/histogram.R | 4 R/histogram_by_group.R | 6 R/id_across_datasets.R | 3 R/mediation_analysis.R | 7 + R/merge_data_table_list.R | 2 R/merge_data_tables.R | 2 R/multiple_regression.R | 9 - R/onAttach.R | 119 ++++++++---------- R/order_rows_specifically_in_dt.R | 3 R/prep.R | 3 R/pretty_round_p_value.R | 9 - R/print_loop_progress.R | 2 R/remove_user_installed_pkgs.R |only R/scatterplot.R | 6 R/score_scale_items.R |only R/se_of_mean.R | 2 R/setup_r_env.R | 33 +---- R/setwd_to_active_doc.R |only R/t_test_pairwise.R | 12 + R/tabulate_vector.R | 6 R/theme_kim.R | 5 R/update_kim.R | 123 ++++++++++++------ README.md | 15 -- build |only inst/CITATION | 4 man/barplot_for_counts.Rd | 54 ++++---- man/capitalize.Rd | 52 +++---- man/chi_square_test_pairwise.Rd | 98 +++++++-------- man/clean_data_from_qualtrics.Rd | 128 +++++++++---------- man/coefficent_of_variation.Rd | 50 +++---- man/cohen_d.Rd | 74 +++++------ man/cohen_d_from_cohen_textbook.Rd | 75 ++++++----- man/comma_sep_string_to_numbers.Rd | 42 +++--- man/compare_datasets.Rd | 104 +++++++-------- man/compare_groups.Rd | 92 +++++++------- man/cum_percent_plot.Rd | 48 +++---- man/desc_stats.Rd | 101 +++++++-------- man/desc_stats_by_group.Rd | 73 +++++------ man/find_duplicates.Rd | 82 ++++++------ man/floodlight_2_by_continuous.Rd | 221 +++++++++++++++++---------------- man/ggsave_quick.Rd | 106 ++++++++-------- man/histogram.Rd | 122 +++++++++--------- man/histogram_by_group.Rd | 106 ++++++++-------- man/histogram_w_outlier_bins.Rd | 222 +++++++++++++++++----------------- man/id_across_datasets.Rd | 89 +++++++------ man/mann_whitney.Rd | 56 ++++---- man/matrix_prep_dt.Rd | 48 +++---- man/mediation_analysis.Rd | 9 + man/merge_data_table_list.Rd | 110 ++++++++-------- man/merge_data_tables.Rd | 102 +++++++-------- man/multiple_regression.Rd | 62 +++++---- man/order_rows_specifically_in_dt.Rd | 61 ++++----- man/parallel_analysis.Rd | 74 +++++------ man/percentile_rank.Rd | 38 ++--- man/population_variance.Rd | 42 +++--- man/prep.Rd | 100 +++++++-------- man/pretty_round_p_value.Rd | 65 +++++---- man/print_loop_progress.Rd | 104 +++++++-------- man/proportion_of_values_in_vector.Rd | 128 +++++++++---------- man/read_sole_csv.Rd | 60 ++++----- man/regex_match.Rd | 60 ++++----- man/rel_pos_of_value_in_vector.Rd | 52 +++---- man/rel_value_of_pos_in_vector.Rd | 50 +++---- man/remove_user_installed_pkgs.Rd |only man/robust_regression.Rd | 74 +++++------ man/scatterplot.Rd | 210 ++++++++++++++++---------------- man/score_scale_items.Rd |only man/se_of_mean.Rd | 50 ++++--- man/setup_r_env.Rd | 71 +++++----- man/setwd_to_active_doc.Rd |only man/start_kim.Rd | 78 +++++------ man/t_test_pairwise.Rd | 95 +++++++------- man/tabulate_vector.Rd | 154 ++++++++++++----------- man/theme_kim.Rd | 94 +++++++------- man/top_median_or_bottom.Rd | 46 +++---- man/two_way_anova.Rd | 192 ++++++++++++++--------------- man/update_kim.Rd | 65 ++++----- man/wilcoxon_rank_sum_test.Rd | 68 +++++----- man/write_csv.Rd | 62 ++++----- 89 files changed, 2654 insertions(+), 2529 deletions(-)
Title: A Toolbox for Geometric Data Analysis and More
Description: Contains functions for 'specific' Multiple Correspondence Analysis,
Class Specific Analysis, Multiple Factor Analysis, 'standardized' MCA, computing and plotting structuring factors and concentration ellipses,
inductive tests and others tools for Geometric Data Analysis (Le Roux & Rouanet (2005) <doi:10.1007/1-4020-2236-0>). It also provides functions
for the translation of logit models coefficients into percentages (Deauvieau (2010) <doi:10.1177/0759106309352586>), weighted contingency tables, an association
measure for contingency tables ("Percentages of Maximum Deviation from Independence", aka PEM, see Cibois (1993) <doi:10.1177/075910639304000103>) and some tools to measure bivariate associations between variables
(phi, Cramér V, correlation coefficient, eta-squared...).
Author: Nicolas Robette
Maintainer: Nicolas Robette <nicolas.robette@uvsq.fr>
Diff between GDAtools versions 1.5 dated 2020-05-17 and 1.6 dated 2021-03-28
GDAtools-1.5/GDAtools/NEWS |only GDAtools-1.5/GDAtools/R/prop.wtable.R |only GDAtools-1.5/GDAtools/man/prop.wtable.Rd |only GDAtools-1.6/GDAtools/DESCRIPTION | 20 ++-- GDAtools-1.6/GDAtools/MD5 | 60 +++++++----- GDAtools-1.6/GDAtools/NAMESPACE | 10 +- GDAtools-1.6/GDAtools/NEWS.md |only GDAtools-1.6/GDAtools/R/assoc.catcont.R | 49 ++++++++-- GDAtools-1.6/GDAtools/R/assoc.twocat.R | 121 ++++++++++++++++++------- GDAtools-1.6/GDAtools/R/assoc.twocont.R |only GDAtools-1.6/GDAtools/R/assoc.yx.R |only GDAtools-1.6/GDAtools/R/catdesc.R | 18 +-- GDAtools-1.6/GDAtools/R/condesc.R | 6 - GDAtools-1.6/GDAtools/R/darma.R |only GDAtools-1.6/GDAtools/R/ggadd_interaction.R | 7 + GDAtools-1.6/GDAtools/R/ggcloud_variables.R | 38 +++++-- GDAtools-1.6/GDAtools/R/pem.R | 38 ++++--- GDAtools-1.6/GDAtools/R/phi.table.R |only GDAtools-1.6/GDAtools/R/translate.logit.R | 80 ++++------------ GDAtools-1.6/GDAtools/R/wtable.R | 85 ++++++++++------- GDAtools-1.6/GDAtools/README.md |only GDAtools-1.6/GDAtools/man/assoc.catcont.Rd | 26 +++-- GDAtools-1.6/GDAtools/man/assoc.twocat.Rd | 29 ++++- GDAtools-1.6/GDAtools/man/assoc.twocont.Rd |only GDAtools-1.6/GDAtools/man/assoc.yx.Rd |only GDAtools-1.6/GDAtools/man/catdesc.Rd | 12 +- GDAtools-1.6/GDAtools/man/condesc.Rd | 4 GDAtools-1.6/GDAtools/man/darma.Rd |only GDAtools-1.6/GDAtools/man/figures |only GDAtools-1.6/GDAtools/man/ggadd_ellipses.Rd | 6 - GDAtools-1.6/GDAtools/man/ggadd_interaction.Rd | 6 - GDAtools-1.6/GDAtools/man/ggadd_supvar.Rd | 2 GDAtools-1.6/GDAtools/man/ggcloud_indiv.Rd | 2 GDAtools-1.6/GDAtools/man/ggcloud_variables.Rd | 7 - GDAtools-1.6/GDAtools/man/pem.Rd | 29 +++-- GDAtools-1.6/GDAtools/man/phi.table.Rd |only GDAtools-1.6/GDAtools/man/translate.logit.Rd | 6 - GDAtools-1.6/GDAtools/man/wtable.Rd | 18 ++- 38 files changed, 407 insertions(+), 272 deletions(-)
Title: Extensions for 'Flextable'
Description: Build display tables easily by extending the functionality of the
'flextable' package. Features include spanning header, grouping rows,
parsing markdown and so on.
Author: Atsushi Yasumoto [aut, cph, cre]
(<https://orcid.org/0000-0002-8335-495X>),
David Gohel [ctb],
Romain François [ctb] (<https://orcid.org/0000-0002-2444-4226>)
Maintainer: Atsushi Yasumoto <atusy.rpkg@gmail.com>
Diff between ftExtra versions 0.1.1 dated 2021-01-27 and 0.2.0 dated 2021-03-28
DESCRIPTION | 21 MD5 | 45 + NEWS.md | 24 R/as-paragraph-md.R | 131 ++--- R/colformat.R | 22 R/collect-citations.R |only R/footnote.R | 31 + R/knit-print.R |only R/md2ast.R | 4 R/md2df.R | 17 R/pandoc-extensions.R |only R/pandoc.R |only R/zzz.R |only README.md | 9 inst/WORDLIST | 18 inst/doc/format_columns.R | 40 + inst/doc/format_columns.Rmd | 79 ++- inst/doc/format_columns.html | 1040 +++++++++++++++++++++++++++++++++++++--- inst/doc/group-rows.html | 316 +++++++++++- inst/doc/transform-headers.html | 212 +++++++- inst/lua/blocks-to-inlines.lua |only inst/lua/cite.lua |only man/as_flextable_methods.Rd | 1 man/as_paragraph_md.Rd | 5 man/colformat_md.Rd | 7 tests/testthat/test-md2ast.R | 3 vignettes/format_columns.Rmd | 79 ++- 27 files changed, 1855 insertions(+), 249 deletions(-)
Title: The Skew-Normal and Related Distributions Such as the Skew-t and
the SUN
Description: Build and manipulate probability distributions of the skew-normal
family and some related ones, notably the skew-t and the SUN families.
For the skew-normal and the skew-t distributions, statistical methods are
provided for data fitting and model diagnostics, in the univariate and the
multivariate case.
Author: Adelchi Azzalini [aut, cre] (<https://orcid.org/0000-0002-7583-1269>)
Maintainer: Adelchi Azzalini <adelchi.azzalini@unipd.it>
Diff between sn versions 1.6-2 dated 2020-05-26 and 2.0.0 dated 2021-03-28
sn-1.6-2/sn/man/overview.Rd |only sn-2.0.0/sn/DESCRIPTION | 24 +++-- sn-2.0.0/sn/MD5 | 70 +++++++++------- sn-2.0.0/sn/NAMESPACE | 14 ++- sn-2.0.0/sn/NEWS | 12 ++ sn-2.0.0/sn/R/sn-funct.R | 51 ++++++----- sn-2.0.0/sn/R/sun.R |only sn-2.0.0/sn/build/vignette.rds |binary sn-2.0.0/sn/data/ais.rda |binary sn-2.0.0/sn/data/barolo.rda |binary sn-2.0.0/sn/data/frontier.rda |binary sn-2.0.0/sn/data/wines.rda |binary sn-2.0.0/sn/inst/CITATION | 15 +-- sn-2.0.0/sn/inst/doc/pkg-overview.html | 64 +++++++++++--- sn-2.0.0/sn/inst/doc/pkg_sn-intro.pdf |binary sn-2.0.0/sn/man/SECdistrMv-class.Rd | 3 sn-2.0.0/sn/man/SECdistrUv-class.Rd | 3 sn-2.0.0/sn/man/SUNdistr-base.Rd |only sn-2.0.0/sn/man/SUNdistr-class.Rd |only sn-2.0.0/sn/man/SUNdistr-op.Rd |only sn-2.0.0/sn/man/affineTransSECdistr.Rd | 2 sn-2.0.0/sn/man/convertCSN2SUNpar.Rd |only sn-2.0.0/sn/man/convertSN2SUNdistr.Rd |only sn-2.0.0/sn/man/dmsn.Rd | 2 sn-2.0.0/sn/man/dst.Rd | 2 sn-2.0.0/sn/man/extractSECdistr.Rd | 2 sn-2.0.0/sn/man/galton_moors2alpha_nu.Rd | 10 +- sn-2.0.0/sn/man/makeSECdistr.Rd | 2 sn-2.0.0/sn/man/makeSUNdistr.Rd |only sn-2.0.0/sn/man/matrix-op.Rd | 33 ++++++- sn-2.0.0/sn/man/overview-sn.Rd |only sn-2.0.0/sn/man/plot.SECdistr.Rd | 2 sn-2.0.0/sn/man/plot.SUNdistr-method.Rd |only sn-2.0.0/sn/man/plot.selm.Rd | 4 sn-2.0.0/sn/man/profile.selm.Rd | 6 - sn-2.0.0/sn/man/selm.Rd | 2 sn-2.0.0/sn/man/selm.fit.Rd | 4 sn-2.0.0/sn/man/sn-package.Rd | 129 +++++++++++++++--------------- sn-2.0.0/sn/man/summary.SUNdistr-class.Rd |only sn-2.0.0/sn/man/summary.SUNdistr.Rd |only sn-2.0.0/sn/man/symm-modulated-distr.Rd | 2 sn-2.0.0/sn/man/zeta.Rd | 6 - 42 files changed, 286 insertions(+), 178 deletions(-)
Title: Automated Retrieval of ACLED Conflict Event Data
Description: Access and manage the application programming interface (API) of the Armed Conflict Location & Event Data Project (ACLED) at <https://acleddata.com/>. The package makes it easy to retrieve a user-defined sample (or all of the available data) of ACLED, enabling a seamless integration of regular data updates into the research work flow. It requires a minimal number of dependencies. See the package's README file for a note on replicability when drawing on ACLED data. When using this package, you acknowledge that you have read ACLED's terms and conditions of use, and that you agree with their attribution requirements.
Author: Christoph Dworschak [aut, cre]
(<https://orcid.org/0000-0003-0196-9545>),
Rob Williams [ctb] (<https://orcid.org/0000-0001-9259-3883>)
Maintainer: Christoph Dworschak <c.dworschak@essex.ac.uk>
Diff between acled.api versions 1.1.2 dated 2021-03-04 and 1.1.3 dated 2021-03-28
DESCRIPTION | 10 ++++----- MD5 | 15 +++++++------- NEWS.md | 14 ++++++++++--- R/acled.api.R | 35 ++++++++++++++------------------ R/acled.api.internal.R | 2 - R/supp.fun.R |only README.md | 42 ++++++++++++++++++++++----------------- man/acled.api.Rd | 12 ++++++----- tests/testthat/test-acled.R | 47 ++++++++++++++++++++++++++++++++++++++++---- 9 files changed, 115 insertions(+), 62 deletions(-)
Title: MDL Multiresolution Linear Regression Framework
Description: We provide the framework to analyze multiresolution partitions (e.g. country, provinces, subdistrict) where each individual data point belongs to only one partition in each layer (e.g. i belongs to subdistrict A, province P, and country Q). We assume that a partition in a higher layer subsumes lower-layer partitions (e.g. a nation is at the 1st layer subsumes all provinces at the 2nd layer). Given N individuals that have a pair of real values (x,y) that generated from independent variable X and dependent variable Y. Each individual i belongs to one partition per layer. Our goal is to find which partitions at which highest level that all individuals in the these partitions share the same linear model Y=f(X) where f is a linear function. The framework deploys the Minimum Description Length principle (MDL) to infer solutions. The publication of this package is at Chainarong Amornbunchornvej, Navaporn Surasvadi, Anon Plangprasopchok, and Suttipong Thajchayapong (2021) <doi:10.1145/3424670>.
Author: Chainarong Amornbunchornvej [aut, cre]
(<https://orcid.org/0000-0003-3131-0370>)
Maintainer: Chainarong Amornbunchornvej <grandca@gmail.com>
Diff between MRReg versions 0.1.3 dated 2021-01-06 and 0.1.4 dated 2021-03-28
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- NEWS.md | 3 +++ inst/doc/MDLResFramework_Demo.html | 28 ++++++++++++++-------------- 4 files changed, 24 insertions(+), 21 deletions(-)
Title: 'anndata' for R
Description: A 'reticulate' wrapper for the Python package 'anndata'.
Provides a scalable way of keeping track of data and learned
annotations. Used to read from and write to the h5ad file format.
Author: Philipp Angerer [ccp] (<https://orcid.org/0000-0002-0369-2888>,
flying-sheep),
Alex Wolf [ccp] (<https://orcid.org/0000-0002-8760-7838>, falexwolf),
Isaac Virshup [ccp] (ivirshup),
Sergei Rybakov [ccp] (Koncopd),
Robrecht Cannoodt [aut, ctb, cre, cph]
(<https://orcid.org/0000-0003-3641-729X>, rcannood)
Maintainer: Robrecht Cannoodt <rcannood@gmail.com>
Diff between anndata versions 0.7.5.1 dated 2021-02-02 and 0.7.5.2 dated 2021-03-28
anndata-0.7.5.1/anndata/R/AnnData.R |only anndata-0.7.5.1/anndata/R/Layers.R |only anndata-0.7.5.1/anndata/R/Raw.R |only anndata-0.7.5.2/anndata/DESCRIPTION | 35 - anndata-0.7.5.2/anndata/MD5 | 61 +- anndata-0.7.5.2/anndata/NEWS.md | 10 anndata-0.7.5.2/anndata/R/class_anndata.R |only anndata-0.7.5.2/anndata/R/class_layers.R |only anndata-0.7.5.2/anndata/R/class_raw.R |only anndata-0.7.5.2/anndata/R/concat.R | 2 anndata-0.7.5.2/anndata/R/read_csv.R | 2 anndata-0.7.5.2/anndata/R/read_excel.R | 2 anndata-0.7.5.2/anndata/R/read_h5ad.R | 2 anndata-0.7.5.2/anndata/R/read_hdf.R | 2 anndata-0.7.5.2/anndata/R/read_loom.R | 2 anndata-0.7.5.2/anndata/R/read_mtx.R | 2 anndata-0.7.5.2/anndata/R/read_text.R | 2 anndata-0.7.5.2/anndata/R/read_umi_tools.R | 2 anndata-0.7.5.2/anndata/R/reticulate_conversions.R | 15 anndata-0.7.5.2/anndata/R/zzz.R |only anndata-0.7.5.2/anndata/README.md | 339 ++----------- anndata-0.7.5.2/anndata/build |only anndata-0.7.5.2/anndata/inst |only anndata-0.7.5.2/anndata/man/AnnData.Rd | 257 +-------- anndata-0.7.5.2/anndata/man/AnnDataHelpers.Rd | 2 anndata-0.7.5.2/anndata/man/Layers.Rd | 197 +++++++ anndata-0.7.5.2/anndata/man/LayersHelpers.Rd | 6 anndata-0.7.5.2/anndata/man/RawHelpers.Rd | 6 anndata-0.7.5.2/anndata/man/all.equal.AnnDataR6.Rd | 2 anndata-0.7.5.2/anndata/man/all.equal.LayersR6.Rd | 2 anndata-0.7.5.2/anndata/man/install_anndata.Rd | 5 anndata-0.7.5.2/anndata/man/readme_files/anndata_for_r.png |only anndata-0.7.5.2/anndata/tests/testthat/test-base.R | 5 anndata-0.7.5.2/anndata/vignettes |only 34 files changed, 397 insertions(+), 563 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-03-30 0.1.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-05-06 0.2.1
2018-04-04 0.2.0
2017-09-08 0.1.5
2017-04-17 0.1.4
2017-03-20 0.1.2
2017-03-06 0.1.1
2017-01-21 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-06-15 0.1.1
2019-02-07 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-07-11 1.4.5
2017-11-27 1.4-2
2017-08-21 1.4-1
2016-03-11 1.3-1
2015-11-16 1.3
2015-07-22 1.2
Title: Dynamic Function-Oriented 'Make'-Like Declarative Workflows
Description: As a pipeline toolkit for Statistics and data science in R,
the 'targets' package brings together function-oriented programming and
'Make'-like declarative workflows.
It analyzes the dependency relationships among the tasks of a workflow,
skips steps that are already up to date, runs the necessary
computation with optional parallel workers, abstracts files as
R objects, and provides tangible evidence that the results match
the underlying code and data. The methodology in this package
borrows from GNU 'Make' (2015, ISBN:978-9881443519)
and 'drake' (2018, <doi:10.21105/joss.00550>).
Author: William Michael Landau [aut, cre]
(<https://orcid.org/0000-0003-1878-3253>),
Matthew T. Warkentin [ctb],
Samantha Oliver [rev] (<https://orcid.org/0000-0001-5668-1165>),
Tristan Mahr [rev] (<https://orcid.org/0000-0002-8890-5116>),
Eli Lilly and Company [cph]
Maintainer: William Michael Landau <will.landau@gmail.com>
Diff between targets versions 0.3.0 dated 2021-03-27 and 0.3.1 dated 2021-03-28
DESCRIPTION | 6 ++--- MD5 | 36 ++++++++++++++++---------------- NEWS.md | 14 ++++++++++++ R/class_parallel.R | 6 ++--- R/class_pattern.R | 8 +++---- R/class_prelocal.R | 2 - R/class_queue.R | 2 - R/class_sequential.R | 2 - R/utils_assert.R | 16 ++++++++++++++ build/partial.rdb |binary tests/testthat/test-class_aws_feather.R | 2 + tests/testthat/test-class_aws_parquet.R | 2 + tests/testthat/test-class_feather.R | 2 + tests/testthat/test-class_imports.R | 3 ++ tests/testthat/test-class_parallel.R | 24 ++++++++++----------- tests/testthat/test-class_parquet.R | 2 + tests/testthat/test-class_sequential.R | 4 +-- tests/testthat/test-utils_assert.R | 9 ++++++++ tests/testthat/test-utils_oop.R | 2 - 19 files changed, 96 insertions(+), 46 deletions(-)
Title: Tables of Descriptive Statistics in HTML
Description: Create HTML tables of descriptive statistics, as one would expect
to see as the first table (i.e. "Table 1") in a medical/epidemiological journal
article.
Author: Benjamin Rich [aut, cre, cph]
Maintainer: Benjamin Rich <mail@benjaminrich.net>
Diff between table1 versions 1.2.1 dated 2020-11-26 and 1.3 dated 2021-03-28
DESCRIPTION | 8 MD5 | 34 NAMESPACE | 82 NEWS.md | 132 R/eqcut.R | 310 +- R/t1read.R | 208 - R/table1.R | 2300 ++++++++------- README.md | 142 build/vignette.rds |binary inst/doc/table1-examples.R | 413 +- inst/doc/table1-examples.Rmd | 1015 +++--- inst/doc/table1-examples.html | 3983 +++++++++++++-------------- inst/table1_defaults_1.0/table1_defaults.css | 201 - man/knit_print.table1.Rd | 32 man/signif_pad.Rd | 136 man/table1.Rd | 340 +- vignettes/style.css | 44 vignettes/table1-examples.Rmd | 1015 +++--- 18 files changed, 5220 insertions(+), 5175 deletions(-)
Title: Spatial Analysis and Modelling Utilities
Description: Utilities to support spatial data manipulation, query, sampling
and modelling. Functions include models for species population density, download
utilities for climate and global deforestation spatial products, spatial
smoothing, multivariate separability, point process model for creating pseudo-
absences and sub-sampling, polygon and point-distance landscape metrics,
auto-logistic model, sampling models, cluster optimization, statistical
exploratory tools and raster-based metrics.
Author: Jeffrey S. Evans [aut, cre],
Melanie A. Murphy [ctb],
Karthik Ram [ctb]
Maintainer: Jeffrey S. Evans <jeffrey_evans@tnc.org>
Diff between spatialEco versions 1.3-5 dated 2021-01-10 and 1.3-6 dated 2021-03-28
DESCRIPTION | 14 +++++++------ MD5 | 24 +++++++++++------------ R/nni.R | 12 +++++------ R/o.ring.R | 16 +++++++-------- R/pp.subsample.R | 52 +++++++++++++++++++++++++------------------------- R/pseudo.absence.R | 50 ++++++++++++++++++++++++------------------------ data/DAYMET_tiles.rda |binary data/pu.rda |binary inst/CITATION | 4 +-- inst/NEWS | 6 +++++ man/o.ring.Rd | 4 +-- man/pp.subsample.Rd | 2 - man/pseudo.absence.Rd | 2 - 13 files changed, 97 insertions(+), 89 deletions(-)
Title: Simple Multilayer Perceptron Neural Network
Description: Create and train a multilayer perceptron, a type of feedforward,
fully connected neural network. Features 2 ReLU hidden layers. Learn more
about about the activation functions and backpropagation used by this
network in Goodfellow et al. (2016, ISBN: 9780262035613) "Deep Learning".
Author: Cullen Pu [aut, cre]
Maintainer: Cullen Pu <cullenpu@gmail.com>
Diff between simpleMLP versions 0.2.0 dated 2021-02-11 and 1.0.0 dated 2021-03-28
simpleMLP-0.2.0/simpleMLP/man/load_mnist_test.Rd |only simpleMLP-0.2.0/simpleMLP/man/load_mnist_train.Rd |only simpleMLP-1.0.0/simpleMLP/DESCRIPTION | 11 - simpleMLP-1.0.0/simpleMLP/LICENSE | 4 simpleMLP-1.0.0/simpleMLP/MD5 | 36 +-- simpleMLP-1.0.0/simpleMLP/NAMESPACE | 13 - simpleMLP-1.0.0/simpleMLP/NEWS.md | 11 + simpleMLP-1.0.0/simpleMLP/R/nn-mnist.R | 71 +++---- simpleMLP-1.0.0/simpleMLP/R/nn-plot.R |only simpleMLP-1.0.0/simpleMLP/R/nn-train.R | 157 ++++++++++------ simpleMLP-1.0.0/simpleMLP/R/nn.R | 2 simpleMLP-1.0.0/simpleMLP/README.md | 211 +++++++++++----------- simpleMLP-1.0.0/simpleMLP/inst/WORDLIST | 34 +-- simpleMLP-1.0.0/simpleMLP/man/backprop.Rd | 42 ++-- simpleMLP-1.0.0/simpleMLP/man/evaluate.Rd |only simpleMLP-1.0.0/simpleMLP/man/forwardprop.Rd | 38 +-- simpleMLP-1.0.0/simpleMLP/man/init_nn.Rd | 56 ++--- simpleMLP-1.0.0/simpleMLP/man/load_mnist.Rd |only simpleMLP-1.0.0/simpleMLP/man/one_hot_encoding.Rd | 40 ++-- simpleMLP-1.0.0/simpleMLP/man/plot_accuracy.Rd |only simpleMLP-1.0.0/simpleMLP/man/train_nn.Rd | 99 +++++----- simpleMLP-1.0.0/simpleMLP/man/update.Rd | 42 ++-- 22 files changed, 478 insertions(+), 389 deletions(-)
Title: 'spdlog' C++ Header Library for Logging
Description: The mature and widely-used C++ logging library 'spdlog' by Gabi Melman provides
many desirable features. This package bundles these header files for easy use by R packages
via a simple 'LinkingTo:' inclusion.
Author: Dirk Eddelbuettel
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppSpdlog versions 0.0.4 dated 2020-12-11 and 0.0.5 dated 2021-03-28
ChangeLog | 20 ++++ DESCRIPTION | 17 ++- MD5 | 45 ++++----- build/partial.rdb |binary build/vignette.rds |binary inst/NEWS.Rd | 7 + inst/doc/introduction.html | 70 ++++++-------- inst/include/spdlog/common-inl.h | 8 + inst/include/spdlog/common.h | 12 +- inst/include/spdlog/details/file_helper-inl.h | 19 +++ inst/include/spdlog/details/log_msg_buffer-inl.h | 4 inst/include/spdlog/details/os-inl.h | 77 +++++++++++---- inst/include/spdlog/details/os.h | 11 +- inst/include/spdlog/details/registry.h | 2 inst/include/spdlog/pattern_formatter-inl.h | 28 +++++ inst/include/spdlog/sinks/ansicolor_sink-inl.h | 2 inst/include/spdlog/sinks/daily_file_sink.h | 34 ++++++ inst/include/spdlog/sinks/hourly_file_sink.h |only inst/include/spdlog/sinks/stdout_sinks-inl.h | 18 +++ inst/include/spdlog/sinks/win_eventlog_sink.h | 20 +++- inst/include/spdlog/sinks/wincolor_sink-inl.h | 113 ++++++++++++----------- inst/include/spdlog/sinks/wincolor_sink.h | 29 ++--- inst/include/spdlog/tweakme.h | 8 + inst/include/spdlog/version.h | 2 24 files changed, 364 insertions(+), 182 deletions(-)
Title: Correct Bias in DNA Methylation Analyses
Description: Implementation of the algorithms (with minor modifications)
to correct bias in quantitative DNA methylation analyses as described
by Moskalev et al. (2011) <doi:10.1093/nar/gkr213>.
Author: Lorenz A. Kapsner [cre, aut, cph]
(<https://orcid.org/0000-0003-1866-860X>),
Evgeny A. Moskalev [aut]
Maintainer: Lorenz A. Kapsner <lorenz.kapsner@gmail.com>
Diff between rBiasCorrection versions 0.2.7 dated 2021-03-01 and 0.2.8 dated 2021-03-28
DESCRIPTION | 13 MD5 | 26 R/calibration_plot.R | 270 +++++----- R/create_exampleplot.R | 6 R/createbarerrorplots.R | 672 ++++++++++++------------- R/helper-table_prep.R | 60 +- R/regression_utility.R | 28 - R/utils.R | 542 ++++++++++---------- build/partial.rdb |binary build/vignette.rds |binary inst/doc/rBiasCorrection_benchmarking.html | 13 inst/doc/rBiasCorrection_howto.html | 21 tests/testthat.R | 12 tests/testthat/test-algorithm_minmax_TRUE_re.R | 400 +++++++------- 14 files changed, 1045 insertions(+), 1018 deletions(-)
More information about rBiasCorrection at CRAN
Permanent link
Title: Tools to Accompany the 'psych' Package for Psychological
Research
Description: Support functions, data sets, and vignettes for the 'psych' package. Contains several of the biggest data sets for the 'psych' package as well as one vignette. A few helper functions for file manipulation are included as well. For more information, see the <https://personality-project.org/r/> web page.
Author: William Revelle [aut, cre] (<https://orcid.org/0000-0003-4880-9610>)
Maintainer: William Revelle <revelle@northwestern.edu>
Diff between psychTools versions 2.0.8 dated 2020-08-12 and 2.1.3 dated 2021-03-28
DESCRIPTION | 11 +-- MD5 | 48 ++++++++++----- NAMESPACE | 2 R/read.clipboard.R | 80 ++++++++++++++----------- build/vignette.rds |binary data/BFI.adjectives.dictionary.rda |only data/Pollack.rda |only data/bfi.adjectives.keys.rda |only data/big5.100.adjectives.rda |only data/big5.adjectives.keys.rda |only data/globalWarm.rda |only data/spi.dictionary.rda |binary inst/CITATION | 6 - inst/NEWS.Rd | 35 ++++++++++- inst/doc/factor.R | 117 ++++++++++++++++++------------------- inst/doc/factor.Rnw | 7 +- inst/doc/factor.pdf |binary inst/doc/mediation.R |only inst/doc/mediation.pdf |only inst/doc/mediation.rnw |only inst/doc/omega.R |only inst/doc/omega.Rnw |only inst/doc/omega.pdf |only inst/doc/overview.pdf |binary man/BFI.adjectives.dictionary.Rd |only man/Pollack.Rd |only man/big5.100.adjectives.Rd |only man/globalWarm.Rd |only man/holzinger.swineford.Rd | 9 ++ man/spengler.Rd | 4 - man/spi.Rd | 8 +- vignettes/factor.Rnw | 7 +- vignettes/mediation.rnw |only vignettes/omega.Rnw |only 34 files changed, 204 insertions(+), 130 deletions(-)
Title: Efficient Computation of Ordinary and Generalized Poisson
Binomial Distributions
Description: Efficient implementations of multiple exact and approximate methods as described in Hong (2013) <doi:10.1016/j.csda.2012.10.006>, Biscarri, Zhao & Brunner (2018) <doi:10.1016/j.csda.2018.01.007> and Zhang, Hong & Balakrishnan (2018) <doi:10.1080/00949655.2018.1440294> for computing the probability mass, cumulative distribution and quantile functions, as well as generating random numbers for both the ordinary and generalized Poisson binomial distribution.
Author: Florian Junge [aut, cre]
Maintainer: Florian Junge <florian.junge@h-da.de>
Diff between PoissonBinomial versions 1.2.2 dated 2021-03-12 and 1.2.3 dated 2021-03-28
DESCRIPTION | 8 +++--- MD5 | 20 +++++++-------- NEWS.md | 8 +++++- R/RcppExports.R | 4 +++ build/partial.rdb |binary inst/doc/intro.html | 10 ++++++- inst/doc/proc_approx.html | 38 +++++++++++++++++------------ inst/doc/proc_exact.html | 26 ++++++++++++------- inst/include/PoissonBinomial_RcppExports.h | 21 ++++++++++++++++ src/PoissonBinomial.cpp | 19 +++++++++----- src/RcppExports.cpp | 36 +++++++++++++++++++++++++++ 11 files changed, 144 insertions(+), 46 deletions(-)
More information about PoissonBinomial at CRAN
Permanent link
Title: Analysis of Oceanographic Data
Description: Supports the analysis of Oceanographic data, including 'ADCP'
measurements, measurements made with 'argo' floats, 'CTD' measurements,
sectional data, sea-level time series, coastline and topographic data, etc.
Provides specialized functions for calculating seawater properties such as
potential temperature in either the 'UNESCO' or 'TEOS-10' equation of state.
Produces graphical displays that conform to the conventions of the
Oceanographic literature. This package is discussed extensively in
Dan Kelley's book Oceanographic Analysis with R, published
in 2018 by 'Springer-Verlag' with ISBN 978-1-4939-8842-6.
Author: Dan Kelley [aut, cre] (<https://orcid.org/0000-0001-7808-5911>),
Clark Richards [aut] (<https://orcid.org/0000-0002-7833-206X>),
Chantelle Layton [ctb] (<https://orcid.org/0000-0002-3199-5763>, curl()
coauthor),
British Geological Survey [ctb, cph] (magnetic-field subroutine)
Maintainer: Dan Kelley <Dan.Kelley@Dal.Ca>
Diff between oce versions 1.3-0 dated 2021-01-29 and 1.4-0 dated 2021-03-28
oce-1.3-0/oce/README.md |only oce-1.4-0/oce/DESCRIPTION | 12 - oce-1.4-0/oce/MD5 | 158 +++++++++++++------------- oce-1.4-0/oce/NEWS.md |only oce-1.4-0/oce/R/AllClass.R | 2 oce-1.4-0/oce/R/accessors.R | 8 - oce-1.4-0/oce/R/adp.R | 2 oce-1.4-0/oce/R/adv.R | 4 oce-1.4-0/oce/R/amsr.R | 31 +++-- oce-1.4-0/oce/R/argo.R | 84 ++++++++----- oce-1.4-0/oce/R/coastline.R | 6 oce-1.4-0/oce/R/colors.R | 8 - oce-1.4-0/oce/R/ctd.R | 91 ++++++++------ oce-1.4-0/oce/R/echosounder.R | 6 oce-1.4-0/oce/R/geod.R | 4 oce-1.4-0/oce/R/imagep.R | 2 oce-1.4-0/oce/R/lobo.R | 2 oce-1.4-0/oce/R/map.R | 158 ++++++++++++++++---------- oce-1.4-0/oce/R/oce.R | 3 oce-1.4-0/oce/R/sealevel.R | 4 oce-1.4-0/oce/R/topo.R | 45 ------- oce-1.4-0/oce/build/partial.rdb |binary oce-1.4-0/oce/build/vignette.rds |binary oce-1.4-0/oce/demo/00Index | 4 oce-1.4-0/oce/inst/doc/adp.Rmd | 4 oce-1.4-0/oce/inst/doc/adp.html | 32 +++-- oce-1.4-0/oce/inst/doc/ctd.Rmd | 4 oce-1.4-0/oce/inst/doc/ctd.html | 14 +- oce-1.4-0/oce/inst/doc/flags.Rmd | 4 oce-1.4-0/oce/inst/doc/flags.html | 22 ++- oce-1.4-0/oce/inst/doc/map_projections.Rmd | 4 oce-1.4-0/oce/inst/doc/map_projections.html | 24 ++- oce-1.4-0/oce/inst/doc/oce.R | 2 oce-1.4-0/oce/inst/doc/oce.Rmd | 12 - oce-1.4-0/oce/inst/doc/oce.html | 18 ++ oce-1.4-0/oce/inst/doc/subclassing.Rmd | 8 - oce-1.4-0/oce/inst/doc/subclassing.html | 74 ++++++------ oce-1.4-0/oce/man/adv.Rd | 4 oce-1.4-0/oce/man/argo.Rd | 2 oce-1.4-0/oce/man/as.ctd.Rd | 3 oce-1.4-0/oce/man/coastlineCut.Rd | 2 oce-1.4-0/oce/man/colormap.Rd | 6 oce-1.4-0/oce/man/ctdFindProfiles.Rd | 51 ++++---- oce-1.4-0/oce/man/download.topo.Rd | 11 - oce-1.4-0/oce/man/drawPalette.Rd | 2 oce-1.4-0/oce/man/figures/adp_beams.R | 2 oce-1.4-0/oce/man/figures/adp_beams.png |binary oce-1.4-0/oce/man/figures/adpgeometry.R | 3 oce-1.4-0/oce/man/figures/adpgeometry.png |binary oce-1.4-0/oce/man/figures/adpgeometry2.R | 3 oce-1.4-0/oce/man/figures/adpgeometry2.png |binary oce-1.4-0/oce/man/figures/oce-demo-1.png |only oce-1.4-0/oce/man/figures/oce-demo-2.png |only oce-1.4-0/oce/man/figures/oce-demo-3.png |only oce-1.4-0/oce/man/figures/oce-demo-4.png |only oce-1.4-0/oce/man/figures/oce-demo-5.png |only oce-1.4-0/oce/man/figures/oce-demo-6.png |only oce-1.4-0/oce/man/figures/starCoords.R | 2 oce-1.4-0/oce/man/figures/starCoords.png |binary oce-1.4-0/oce/man/geodGc.Rd | 4 oce-1.4-0/oce/man/lobo.Rd | 2 oce-1.4-0/oce/man/lonlat2utm.Rd | 2 oce-1.4-0/oce/man/mapContour.Rd | 2 oce-1.4-0/oce/man/mapCoordinateSystem.Rd | 2 oce-1.4-0/oce/man/mapDirectionField.Rd | 2 oce-1.4-0/oce/man/mapGrid.Rd | 20 +-- oce-1.4-0/oce/man/mapLines.Rd | 21 +-- oce-1.4-0/oce/man/mapPlot.Rd | 64 ++++++---- oce-1.4-0/oce/man/oceSetData.Rd | 8 - oce-1.4-0/oce/man/plot-amsr-method.Rd | 5 oce-1.4-0/oce/man/plot-echosounder-method.Rd | 6 oce-1.4-0/oce/man/read.argo.Rd | 39 ++++-- oce-1.4-0/oce/man/read.coastline.shapefile.Rd | 3 oce-1.4-0/oce/man/read.sealevel.Rd | 2 oce-1.4-0/oce/man/sealevel.Rd | 2 oce-1.4-0/oce/man/standardDepths.Rd | 2 oce-1.4-0/oce/man/utm2lonlat.Rd | 2 oce-1.4-0/oce/tests/testthat/test_colormap.R | 69 +++++------ oce-1.4-0/oce/vignettes/adp.Rmd | 4 oce-1.4-0/oce/vignettes/ctd.Rmd | 4 oce-1.4-0/oce/vignettes/flags.Rmd | 4 oce-1.4-0/oce/vignettes/map_projections.Rmd | 4 oce-1.4-0/oce/vignettes/oce.Rmd | 12 - oce-1.4-0/oce/vignettes/subclassing.Rmd | 8 - 84 files changed, 691 insertions(+), 549 deletions(-)
Title: Simulate from ODE-Based Models
Description: Fast simulation from ordinary differential equation
(ODE) based models typically employed in quantitative pharmacology and
systems biology.
Author: Kyle T Baron [aut, cre] (<https://orcid.org/0000-0001-7252-5656>),
Bill Gillespie [ctb],
Charles Margossian [ctb],
Devin Pastoor [ctb],
Bill Denney [ctb] (<https://orcid.org/0000-0002-5759-428X>),
Dilawar Singh [ctb],
Felicien Le Louedec [ctb] (<https://orcid.org/0000-0003-3699-2729>),
Timothy Waterhouse [ctb] (<https://orcid.org/0000-0002-0954-9660>),
Metrum Research Group [cph]
Maintainer: Kyle T Baron <kyleb@metrumrg.com>
Diff between mrgsolve versions 0.10.7 dated 2020-12-09 and 0.11.0 dated 2021-03-28
DESCRIPTION | 10 MD5 | 76 ++-- NAMESPACE | 2 R/Aaaa.R | 1 R/annot.R | 17 - R/class_matlist.R | 4 R/class_mrgmod.R | 11 R/class_numericlist.R | 1 R/class_tgrid.R | 2 R/data_set.R | 4 R/handle_spec_block.R | 643 +++++++++++++++++++++++++----------------- R/matlist.R | 2 R/modspec.R | 129 +++++--- R/mread.R | 82 ++--- R/nmxml.R | 169 ++++++++--- R/package.R | 2 R/utils.R | 12 inst/WORDLIST | 11 inst/base/mrgsolv.h | 6 inst/include/dataobject.h | 3 inst/nonmem/2005 |only man/BLOCK_PARSE.Rd | 82 ++++- man/as.list-mrgmod-method.Rd | 4 man/data_set.Rd | 4 man/mread.Rd | 1 man/mrgsolve_package.Rd | 2 man/nmext.Rd | 15 man/nmxml.Rd | 10 man/omega.Rd | 2 man/read_nmext.Rd | 17 - src/dataobject.cpp | 14 src/datarecord.cpp | 3 src/devtran.cpp | 7 src/odeproblem.cpp | 18 + tests/testthat/nm |only tests/testthat/test-modspec.R | 263 ++++++++++++++++- tests/testthat/test-mrgsim.R | 24 + tests/testthat/test-nmxml.R | 67 ++++ 38 files changed, 1203 insertions(+), 517 deletions(-)
Title: The Hilbert-Huang Transform: Tools and Methods
Description: Builds on the EMD package to provide additional tools for empirical mode decomposition (EMD) and Hilbert spectral analysis. It also implements the ensemble empirical decomposition (EEMD) and the complete ensemble empirical mode decomposition (CEEMD) methods to avoid mode mixing and intermittency problems found in EMD analysis. The package comes with several plotting methods that can be used to view intrinsic mode functions, the HHT spectrum, and the Fourier spectrum.
Author: Daniel C. Bowman [aut, cre],
Jonathan M. Lees [ctb]
Maintainer: Daniel C. Bowman <danny.c.bowman@gmail.com>
Diff between hht versions 2.1.3 dated 2016-05-18 and 2.1.4 dated 2021-03-28
DESCRIPTION | 11 ++++++----- MD5 | 42 +++++++++++++++++++++--------------------- NAMESPACE | 2 +- NEWS | 3 +++ R/rendering_and_plotting.R | 4 ++-- man/CEEMD.Rd | 2 +- man/CombineTrials.Rd | 2 +- man/EEMD.Rd | 2 +- man/EEMDCompile.Rd | 2 +- man/EEMDResift.Rd | 2 +- man/EvolutiveFFT.Rd | 2 +- man/FTGramImage.Rd | 2 +- man/HHGramImage.Rd | 2 +- man/HHRender.Rd | 2 +- man/HHSpecPlot.Rd | 2 +- man/HHSpectrum.Rd | 6 +++++- man/HHTPackagePlotter.Rd | 2 +- man/HilbertEnvelope.Rd | 2 +- man/HilbertTransform.Rd | 2 +- man/InstantaneousFrequency.Rd | 2 +- man/PlotIMFs.Rd | 2 +- man/PrecisionTester.Rd | 5 +---- 22 files changed, 54 insertions(+), 49 deletions(-)
Title: Easily Work with 'Font Awesome' Icons
Description: Easily and flexibly insert 'Font Awesome' icons into 'R Markdown'
documents and 'Shiny' apps. These icons can be inserted into HTML content
through inline 'SVG' tags or 'i' tags. There is also a utility function for
exporting 'Font Awesome' icons as 'PNG' images for those situations where
raster graphics are needed.
Author: Richard Iannone [aut, cre] (<https://orcid.org/0000-0003-3925-190X>),
Christophe Dervieux [ctb] (<https://orcid.org/0000-0003-4474-2498>),
Winston Chang [ctb],
Dave Gandy [ctb, cph] (Font-Awesome font),
RStudio [cph, fnd]
Maintainer: Richard Iannone <rich@rstudio.com>
Diff between fontawesome versions 0.1.0 dated 2021-02-22 and 0.2.0 dated 2021-03-28
fontawesome-0.1.0/fontawesome/R/font-awesome.R |only fontawesome-0.1.0/fontawesome/R/sysdata.rda |only fontawesome-0.1.0/fontawesome/R/utils-pipe.R |only fontawesome-0.1.0/fontawesome/inst/fontawesome/webfonts/fa-brands-400.eot |only fontawesome-0.1.0/fontawesome/inst/fontawesome/webfonts/fa-brands-400.svg |only fontawesome-0.1.0/fontawesome/inst/fontawesome/webfonts/fa-brands-400.ttf |only fontawesome-0.1.0/fontawesome/inst/fontawesome/webfonts/fa-brands-400.woff2 |only fontawesome-0.1.0/fontawesome/inst/fontawesome/webfonts/fa-regular-400.eot |only fontawesome-0.1.0/fontawesome/inst/fontawesome/webfonts/fa-regular-400.svg |only fontawesome-0.1.0/fontawesome/inst/fontawesome/webfonts/fa-regular-400.ttf |only fontawesome-0.1.0/fontawesome/inst/fontawesome/webfonts/fa-regular-400.woff2 |only fontawesome-0.1.0/fontawesome/inst/fontawesome/webfonts/fa-solid-900.eot |only fontawesome-0.1.0/fontawesome/inst/fontawesome/webfonts/fa-solid-900.svg |only fontawesome-0.1.0/fontawesome/inst/fontawesome/webfonts/fa-solid-900.ttf |only fontawesome-0.1.0/fontawesome/inst/fontawesome/webfonts/fa-solid-900.woff2 |only fontawesome-0.1.0/fontawesome/man/pipe.Rd |only fontawesome-0.1.0/fontawesome/tests/manual_tests |only fontawesome-0.1.0/fontawesome/tests/testthat/test-fa_table.R |only fontawesome-0.1.0/fontawesome/tools |only fontawesome-0.2.0/fontawesome/DESCRIPTION | 17 fontawesome-0.2.0/fontawesome/MD5 | 78 +-- fontawesome-0.2.0/fontawesome/NAMESPACE | 5 fontawesome-0.2.0/fontawesome/NEWS.md | 14 fontawesome-0.2.0/fontawesome/R/fa.R | 260 ++++++++-- fontawesome-0.2.0/fontawesome/R/fa_brands.R |only fontawesome-0.2.0/fontawesome/R/fa_html_dependency.R |only fontawesome-0.2.0/fontawesome/R/fa_i.R | 118 +++- fontawesome-0.2.0/fontawesome/R/fa_metadata.R |only fontawesome-0.2.0/fontawesome/R/fa_png.R | 32 - fontawesome-0.2.0/fontawesome/R/fa_tbl.R |only fontawesome-0.2.0/fontawesome/R/fa_v4_v5.R |only fontawesome-0.2.0/fontawesome/R/fa_version.R |only fontawesome-0.2.0/fontawesome/R/knit_print.R | 59 ++ fontawesome-0.2.0/fontawesome/R/print.R | 35 - fontawesome-0.2.0/fontawesome/R/utils.R | 21 fontawesome-0.2.0/fontawesome/R/zzz.R | 19 fontawesome-0.2.0/fontawesome/README.md | 20 fontawesome-0.2.0/fontawesome/inst/fontawesome/css/all.css | 11 fontawesome-0.2.0/fontawesome/inst/fontawesome/css/all.min.css | 4 fontawesome-0.2.0/fontawesome/inst/fontawesome/css/v4-shims.css | 2 fontawesome-0.2.0/fontawesome/inst/fontawesome/css/v4-shims.min.css | 2 fontawesome-0.2.0/fontawesome/inst/fontawesome/webfonts/fa-brands-400.woff |binary fontawesome-0.2.0/fontawesome/inst/fontawesome/webfonts/fa-regular-400.woff |binary fontawesome-0.2.0/fontawesome/inst/fontawesome/webfonts/fa-solid-900.woff |binary fontawesome-0.2.0/fontawesome/man/fa.Rd | 49 + fontawesome-0.2.0/fontawesome/man/fa_html_dependency.Rd |only fontawesome-0.2.0/fontawesome/man/fa_i.Rd | 32 + fontawesome-0.2.0/fontawesome/man/fa_metadata.Rd |only fontawesome-0.2.0/fontawesome/man/fa_png.Rd | 5 fontawesome-0.2.0/fontawesome/man/figures/fontawesome_rmd.png |binary fontawesome-0.2.0/fontawesome/man/figures/fontawesome_shiny_app.png |binary fontawesome-0.2.0/fontawesome/tests/testthat/test-fa_icon.R | 32 + 52 files changed, 603 insertions(+), 212 deletions(-)
Title: Empirical Distribution Ordering Inference Framework (EDOIF)
Description: A non-parametric framework based on estimation statistics principle. Its main purpose is to infer orders of empirical distributions from different categories based on a probability of finding a value in one distribution that is greater than an expectation of another distribution. Given a set of ordered-pair of real-category values the framework is capable of 1) inferring orders of domination of categories and representing orders in the form of a graph; 2) estimating magnitude of difference between a pair of categories in forms of mean-difference confidence intervals; and 3) visualizing domination orders and magnitudes of difference of categories. The publication of this package is at Chainarong Amornbunchornvej, Navaporn Surasvadi, Anon Plangprasopchok, and Suttipong Thajchayapong (2020) <doi:10.1016/j.heliyon.2020.e05435>.
Author: Chainarong Amornbunchornvej [aut, cre]
(<https://orcid.org/0000-0003-3131-0370>)
Maintainer: Chainarong Amornbunchornvej <grandca@gmail.com>
Diff between EDOIF versions 0.1.2 dated 2020-11-07 and 0.1.3 dated 2021-03-28
DESCRIPTION | 8 +-- MD5 | 8 +-- NEWS.md | 2 inst/CITATION | 4 - inst/doc/EDOIF_demo.html | 110 +++++++++++++++++++++++------------------------ 5 files changed, 67 insertions(+), 65 deletions(-)
Title: Required 'libphonenumber' jars for the 'dialr' Package
Description: Collects 'libphonenumber' jars required for the
'dialr' package.
Author: Danny Smith [aut, cre],
Google Inc. [ctb, cph] (libphonenumber),
Vonage Holdings Corp. [ctb, cph] (libphonenumber),
Ian Galpin [ctb, cph] (libphonenumber),
Ben Gertzfield [ctb, cph] (libphonenumber)
Maintainer: Danny Smith <danny@gorcha.org>
Diff between dialrjars versions 8.12.19 dated 2021-03-16 and 8.12.20 dated 2021-03-28
dialrjars-8.12.19/dialrjars/inst/java/carrier-1.145.jar |only dialrjars-8.12.19/dialrjars/inst/java/geocoder-2.155.jar |only dialrjars-8.12.19/dialrjars/inst/java/libphonenumber-8.12.19.jar |only dialrjars-8.12.19/dialrjars/inst/java/prefixmapper-2.155.jar |only dialrjars-8.12.20/dialrjars/DESCRIPTION | 7 ++--- dialrjars-8.12.20/dialrjars/MD5 | 12 +++++----- dialrjars-8.12.20/dialrjars/NEWS.md | 10 ++++++++ dialrjars-8.12.20/dialrjars/inst/java/carrier-1.146.jar |only dialrjars-8.12.20/dialrjars/inst/java/geocoder-2.156.jar |only dialrjars-8.12.20/dialrjars/inst/java/libphonenumber-8.12.20.jar |only dialrjars-8.12.20/dialrjars/inst/java/prefixmapper-2.156.jar |only 11 files changed, 19 insertions(+), 10 deletions(-)
Title: Residual Diagnostics for Hierarchical (Multi-Level / Mixed)
Regression Models
Description: The 'DHARMa' package uses a simulation-based approach to create
readily interpretable scaled (quantile) residuals for fitted (generalized) linear mixed
models. Currently supported are linear and generalized linear (mixed) models from 'lme4'
(classes 'lmerMod', 'glmerMod'), 'glmmTMB' 'GLMMadaptive' and 'spaMM', generalized additive models
('gam' from 'mgcv'), 'glm' (including 'negbin' from 'MASS', but excluding quasi-distributions) and
'lm' model classes. Moreover, externally created simulations, e.g. posterior predictive simulations
from Bayesian software such as 'JAGS', 'STAN', or 'BUGS' can be processed as well.
The resulting residuals are standardized to values between 0 and 1 and can be interpreted
as intuitively as residuals from a linear regression. The package also provides a number of
plot and test functions for typical model misspecification problems, such as
over/underdispersion, zero-inflation, and residual spatial and temporal autocorrelation.
Author: Florian Hartig [aut, cre] (<https://orcid.org/0000-0002-6255-9059>),
Lukas Lohse [ctb]
Maintainer: Florian Hartig <florian.hartig@biologie.uni-regensburg.de>
Diff between DHARMa versions 0.3.4 dated 2021-03-23 and 0.4.0 dated 2021-03-28
DESCRIPTION | 9 ++++----- MD5 | 10 +++++----- NEWS | 12 +++++++++++- R/compatibility.R | 2 +- inst/doc/DHARMa.html | 8 ++++---- inst/doc/DHARMaForBayesians.html | 4 ++-- 6 files changed, 27 insertions(+), 18 deletions(-)
Title: Data Only: The Correlates of State Policy Project Dataset
Description: Contains the Correlates of State Policy Project dataset (+ codebook) assembled by Marty P. Jordan and Matt Grossmann (2020) <http://ippsr.msu.edu/public-policy/correlates-state-policy> used by the 'cspp' package. The Correlates data contains over 2000 variables across more than 100 years that pertain to state politics and policy in the United States.
Author: Caleb Lucas (https://caleblucas.com/) and Joshua McCrain (http://joshuamccrain.com/)
Maintainer: Josh McCrain <josh.mccrain@gmail.com>
Diff between csppData versions 0.1.0 dated 2020-12-17 and 0.1.2 dated 2021-03-28
csppData-0.1.0/csppData/data/datalist |only csppData-0.1.2/csppData/DESCRIPTION | 8 ++++---- csppData-0.1.2/csppData/MD5 | 13 ++++++------- csppData-0.1.2/csppData/R/zzz.R | 2 +- csppData-0.1.2/csppData/README.md | 25 ++++++++++++++++--------- csppData-0.1.2/csppData/data/codebook.rda |binary csppData-0.1.2/csppData/data/correlates.rda |binary csppData-0.1.2/csppData/man/codebook.Rd | 2 +- 8 files changed, 28 insertions(+), 22 deletions(-)
Title: Tools: Moving Window Statistics, GIF, Base64, ROC AUC, etc
Description: Contains several basic utility functions including: moving
(rolling, running) window statistic functions, read/write for
GIF and ENVI binary files, fast calculation of AUC, LogitBoost
classifier, base64 encoder/decoder, round-off-error-free sum
and cumsum, etc.
Author: Jarek Tuszynski <jaroslaw.w.tuszynski@saic.com>
Maintainer: Michael Dietze <mdietze@gfz-potsdam.de>
Diff between caTools versions 1.18.1 dated 2021-01-11 and 1.18.2 dated 2021-03-28
CHANGES | 4 - DESCRIPTION | 8 +- MD5 | 8 +- man/ENVI.Rd | 230 ++++++++++++++++++++++++++++++------------------------------ man/GIF.Rd | 42 ++++------ 5 files changed, 145 insertions(+), 147 deletions(-)
Title: Call R from R
Description: It is sometimes useful to perform a computation in a
separate R process, without affecting the current R process at all.
This packages does exactly that.
Author: Gábor Csárdi [aut, cre, cph] (<https://orcid.org/0000-0001-7098-9676>),
Winston Chang [aut],
RStudio [cph, fnd],
Mango Solutions [cph, fnd]
Maintainer: Gábor Csárdi <csardi.gabor@gmail.com>
Diff between callr versions 3.5.1 dated 2020-10-13 and 3.6.0 dated 2021-03-28
callr-3.5.1/callr/inst/client.R |only callr-3.5.1/callr/man/rcmd_safe.Rd |only callr-3.6.0/callr/DESCRIPTION | 13 +-- callr-3.6.0/callr/MD5 | 69 +++++++++-------- callr-3.6.0/callr/NAMESPACE | 1 callr-3.6.0/callr/NEWS.md | 11 ++ callr-3.6.0/callr/R/check.R | 4 - callr-3.6.0/callr/R/eval-bg.R | 2 callr-3.6.0/callr/R/eval.R | 19 +++- callr-3.6.0/callr/R/hook.R | 10 -- callr-3.6.0/callr/R/load-client.R |only callr-3.6.0/callr/R/options.R | 9 +- callr-3.6.0/callr/R/package.R | 85 ++++++++-------------- callr-3.6.0/callr/R/r-session.R | 36 ++++++++- callr-3.6.0/callr/R/rcmd.R | 1 callr-3.6.0/callr/R/script.R | 5 - callr-3.6.0/callr/R/setup.R | 27 ++++++ callr-3.6.0/callr/R/utils.R | 30 +++++++ callr-3.6.0/callr/R/x-client.R |only callr-3.6.0/callr/README.md | 11 +- callr-3.6.0/callr/inst/WORDLIST | 11 +- callr-3.6.0/callr/man/callr.Rd | 1 callr-3.6.0/callr/man/r.Rd | 27 +++--- callr-3.6.0/callr/man/r_bg.Rd | 17 +--- callr-3.6.0/callr/man/r_process.Rd | 12 --- callr-3.6.0/callr/man/r_session.Rd | 16 ---- callr-3.6.0/callr/man/r_session_options.Rd | 33 ++++++++ callr-3.6.0/callr/man/r_vanilla.Rd | 10 -- callr-3.6.0/callr/man/rcmd.Rd | 5 - callr-3.6.0/callr/man/rcmd_process.Rd | 8 -- callr-3.6.0/callr/man/rcmd_safe_env.Rd |only callr-3.6.0/callr/man/rscript_process.Rd | 8 -- callr-3.6.0/callr/man/supported_archs.Rd |only callr-3.6.0/callr/tests/testthat/test-archs.R |only callr-3.6.0/callr/tests/testthat/test-error.R | 13 --- callr-3.6.0/callr/tests/testthat/test-eval.R | 9 ++ callr-3.6.0/callr/tests/testthat/test-r-bg.R | 2 callr-3.6.0/callr/tests/testthat/test-r-session.R | 14 +++ callr-3.6.0/callr/tests/testthat/test-rcmd.R | 4 - 39 files changed, 297 insertions(+), 226 deletions(-)
Title: Access the Bioconductor Project Package Repository
Description: A convenient tool to install and update Bioconductor packages.
Author: Martin Morgan [aut] (<https://orcid.org/0000-0002-5874-8148>),
Marcel Ramos [ctb, cre] (<https://orcid.org/0000-0002-3242-0582>)
Maintainer: Marcel Ramos <marcel.ramos@roswellpark.org>
Diff between BiocManager versions 1.30.10 dated 2019-11-16 and 1.30.12 dated 2021-03-28
DESCRIPTION | 10 MD5 | 47 - NEWS | 34 + R/BiocManager-pkg.R | 60 +- R/inet.R | 12 R/install.R | 30 - R/repositories.R | 192 ++++++- R/utilities.R | 49 + R/valid.R | 4 R/version.R | 88 ++- R/zzz.R | 4 build/vignette.rds |binary inst/doc/BiocManager.R | 37 - inst/doc/BiocManager.Rmd | 55 ++ inst/doc/BiocManager.html | 936 ++++++++++++++++++++----------------- man/BiocManager-pkg.Rd | 69 +- man/install.Rd | 37 - man/repositories.Rd | 70 ++ man/valid.Rd | 32 - tests/testthat.R | 29 - tests/testthat/test_install.R | 35 + tests/testthat/test_repositories.R | 83 ++- tests/testthat/test_valid.R |only tests/testthat/test_version.R | 94 +++ vignettes/BiocManager.Rmd | 55 ++ 25 files changed, 1395 insertions(+), 667 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-11-15 0.3.10
2018-06-12 0.3.5
2018-06-05 0.3.4
2016-09-19 0.2.2
2016-05-10 0.2.1
2016-05-09 0.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-11-20 1.0.2
2020-08-28 1.0.1
2020-07-29 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-11-05 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-04-06 2.0-4
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-02-03 1.2.4
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-10-20 2.3.0
2019-12-16 2.2.3
2019-08-27 2.2.2
2019-02-18 2.2.1
2018-03-24 1.2.1
2018-03-11 1.2
2017-07-27 1.1.1
2017-07-09 1.1
2017-06-24 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-03-22 0.5-5.1
2019-01-04 0.5-5
2017-05-14 0.5-4
2016-07-22 0.5-3
2016-06-25 0.5-2
2016-05-03 0.5-1
2015-07-20 0.4-7
2015-05-11 0.4-6
2015-04-22 0.4-5
2015-01-30 0.4-4
2014-12-09 0.4-3
2014-11-10 0.4-2
2014-05-29 0.4-1
2014-05-04 0.4-0
2014-01-15 0.3-6
2013-11-15 0.3-5
2013-08-07 0.3-4
2013-06-24 0.3-3
2013-04-24 0.3-2
2013-04-18 0.3-1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-07-27 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-01-30 1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-01-03 0.1-2
2017-02-03 0.1-1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-05-09 1.1.6
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-07-14 0.2.5
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-09-18 1.1.0
2020-08-27 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-03-19 1.1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-06-23 1.1.1
2019-12-30 1.0
Title: Penalized Cox Proportional Hazard Model for Time-Dependent
Covariates
Description: Fits penalized models for both time-independent and time-dependent survival data. It fully implements elastic net and uses proximal gradient descent to solve the optimization problem. The package is an implementation of Steve Cygu and Benjamin M. Bolker. (2021) <arXiv:2102.02297>.
Author: Bicko Cygu [aut, cre] (<https://orcid.org/0000-0002-9284-8863>),
Ben Bolker [aut] (<https://orcid.org/0000-0002-2127-0443>)
Maintainer: Bicko Cygu <cygubicko@gmail.com>
Diff between pcoxtime versions 1.0 dated 2021-02-15 and 1.0.1 dated 2021-03-28
DESCRIPTION | 8 +- MD5 | 34 ++++----- NAMESPACE | 9 +- R/methodfuns.R | 2 R/pcoxtime.R | 7 + R/pcoxtimecv.R | 151 +++++++++++++++++++++++----------------- R/pcoxtimeplots.R | 43 +++++++---- R/pkgsExport.R | 8 +- R/posthocfuns.R | 36 ++++++--- man/concordScore.pcoxtime.Rd | 14 ++- man/pcoxtime.Rd | 6 + man/pcoxtimecv.Rd | 8 +- man/pkgsExport.Rd | 4 - man/plot.Score.Rd | 6 + man/predictRisk.pcoxtime.Rd | 6 + man/predictSurvProb.pcoxtime.Rd | 12 ++- src/RcppExports.cpp | 6 - src/helperfuns.cpp | 21 ++--- 18 files changed, 237 insertions(+), 144 deletions(-)
Title: Interface to 'MLflow'
Description: R interface to 'MLflow', open source platform for
the complete machine learning life cycle, see <https://mlflow.org/>.
This package supports installing 'MLflow', tracking experiments,
creating and running projects, and saving and serving models.
Author: Matei Zaharia [aut, cre],
Javier Luraschi [aut],
Kevin Kuo [aut] (<https://orcid.org/0000-0001-7803-7901>),
RStudio [cph]
Maintainer: Matei Zaharia <matei@databricks.com>
Diff between mlflow versions 1.14.1 dated 2021-03-02 and 1.15.0 dated 2021-03-28
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/tracking-experiments.R | 1 + tests/testthat/test-tracking-experiments.R | 27 +++++++++++++-------------- 4 files changed, 20 insertions(+), 20 deletions(-)