Title: R Interface to 'Bloomberg'
Description: An R Interface to 'Bloomberg' is provided via the 'Blp API'.
Author: Whit Armstrong, Dirk Eddelbuettel and John Laing
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between Rblpapi versions 0.3.10 dated 2019-04-07 and 0.3.11 dated 2021-04-20
Rblpapi-0.3.10/Rblpapi/R/defaultConnection.R |only Rblpapi-0.3.10/Rblpapi/inst/auto |only Rblpapi-0.3.10/Rblpapi/inst/unitTests |only Rblpapi-0.3.10/Rblpapi/man/defaultConnection.Rd |only Rblpapi-0.3.10/Rblpapi/tests/doRUnit.R |only Rblpapi-0.3.11/Rblpapi/ChangeLog | 70 +++ Rblpapi-0.3.11/Rblpapi/DESCRIPTION | 13 Rblpapi-0.3.11/Rblpapi/MD5 | 77 +-- Rblpapi-0.3.11/Rblpapi/NAMESPACE | 1 Rblpapi-0.3.11/Rblpapi/R/RcppExports.R | 4 Rblpapi-0.3.11/Rblpapi/R/bdh.R | 6 Rblpapi-0.3.11/Rblpapi/R/bdp.R | 6 Rblpapi-0.3.11/Rblpapi/R/bds.R | 18 Rblpapi-0.3.11/Rblpapi/R/blpAuthenticate.R | 61 ++ Rblpapi-0.3.11/Rblpapi/R/defaults.R |only Rblpapi-0.3.11/Rblpapi/R/fieldSearch.R | 11 Rblpapi-0.3.11/Rblpapi/R/init.R | 11 Rblpapi-0.3.11/Rblpapi/R/portfolio.R | 6 Rblpapi-0.3.11/Rblpapi/R/subscribe.R | 10 Rblpapi-0.3.11/Rblpapi/README.md | 14 Rblpapi-0.3.11/Rblpapi/build/vignette.rds |binary Rblpapi-0.3.11/Rblpapi/cleanup | 2 Rblpapi-0.3.11/Rblpapi/configure | 21 Rblpapi-0.3.11/Rblpapi/inst/NEWS.Rd | 19 Rblpapi-0.3.11/Rblpapi/inst/doc/rblpapi-intro.R | 42 + Rblpapi-0.3.11/Rblpapi/inst/doc/rblpapi-intro.Rmd | 94 +++- Rblpapi-0.3.11/Rblpapi/inst/doc/rblpapi-intro.html | 446 ++++++--------------- Rblpapi-0.3.11/Rblpapi/inst/tinytest |only Rblpapi-0.3.11/Rblpapi/man/bdh.Rd | 9 Rblpapi-0.3.11/Rblpapi/man/bdp.Rd | 6 Rblpapi-0.3.11/Rblpapi/man/bds.Rd | 12 Rblpapi-0.3.11/Rblpapi/man/blpAuthenticate.Rd | 45 +- Rblpapi-0.3.11/Rblpapi/man/defaults.Rd |only Rblpapi-0.3.11/Rblpapi/man/fieldSearch.Rd | 6 Rblpapi-0.3.11/Rblpapi/man/getPortfolio.Rd | 7 Rblpapi-0.3.11/Rblpapi/man/subscribe.Rd | 12 Rblpapi-0.3.11/Rblpapi/src/RcppExports.cpp | 9 Rblpapi-0.3.11/Rblpapi/src/fieldsearch.cpp | 4 Rblpapi-0.3.11/Rblpapi/tests/tinytest.R |only Rblpapi-0.3.11/Rblpapi/vignettes/rblpapi-intro.Rmd | 94 +++- 40 files changed, 651 insertions(+), 485 deletions(-)
Title: Tidy Model Stacking
Description: Model stacking is an ensemble technique
that involves training a model to combine the outputs of many
diverse statistical models, and has been shown to improve
predictive performance in a variety of settings. 'stacks'
implements a grammar for 'tidymodels'-aligned model stacking.
Author: Simon Couch [aut, cre],
Max Kuhn [aut],
RStudio [cph]
Maintainer: Simon Couch <simonpatrickcouch@gmail.com>
Diff between stacks versions 0.1.0 dated 2020-11-23 and 0.2.0 dated 2021-04-20
DESCRIPTION | 22 MD5 | 99 +-- NAMESPACE | 3 NEWS.md | 44 + R/add_candidates.R | 117 +++ R/blend_predictions.R | 77 +- R/butcher.R | 8 R/example_data.R | 5 R/expressions.R | 3 R/fit_members.R | 15 R/plots.R | 8 R/print.R | 3 R/tree_frogs.R | 5 R/utils.R | 44 + README.md | 46 + build/partial.rdb |only build/vignette.rds |binary data/class_folds.rda |binary data/class_res_nn.rda |binary data/class_res_rf.rda |binary data/log_res_nn.rda |binary data/log_res_rf.rda |binary data/reg_folds.rda |binary data/reg_res_lr.rda |binary data/reg_res_sp.rda |binary data/reg_res_svm.rda |binary data/tree_frogs_class_test.rda |binary data/tree_frogs_reg_test.rda |binary inst/doc/basics.html | 858 +++++++++------------------ inst/doc/classification.Rmd | 6 inst/doc/classification.html | 642 ++++++-------------- man/blend_predictions.Rd | 23 man/example_data.Rd | 6 man/stacks_description.Rd | 11 man/tree_frogs.Rd | 3 tests/testthat/helper_functions.R | 18 tests/testthat/out/model_stack_class.txt | 27 tests/testthat/out/model_stack_class_fit.txt | 27 tests/testthat/out/model_stack_log.txt | 15 tests/testthat/out/model_stack_log_fit.txt | 15 tests/testthat/out/model_stack_reg.txt | 14 tests/testthat/out/model_stack_reg_fit.txt | 14 tests/testthat/test_add_candidates.R | 47 + tests/testthat/test_blend_predictions.R | 33 - tests/testthat/test_butcher.R | 37 - tests/testthat/test_collect_parameters.R | 8 tests/testthat/test_fit_members.R | 31 tests/testthat/test_predict.R | 8 tests/testthat/test_print.R | 8 tests/testthat/test_utils.R | 9 vignettes/classification.Rmd | 6 51 files changed, 1132 insertions(+), 1233 deletions(-)
Title: Download, Analyze & Clean New Jersey Car Crash Data
Description: Download and analyze motor vehicle crash data released by the New Jersey Department of Transportation (NJDOT).
The data in this package is collected through the filing of NJTR-1 form by police officers, which provide a standardized way of documenting a motor vehicle crash that occurred in New Jersey.
3 different data tables containing data on crashes, vehicles & pedestrians released from 2001 to the present can be downloaded & cleaned using this package.
Author: Gavin Rozzi [aut, cre] (<https://orcid.org/0000-0002-9969-8175>)
Maintainer: Gavin Rozzi <gr@gavinrozzi.com>
Diff between njtr1 versions 0.1.1 dated 2021-04-04 and 0.2.0 dated 2021-04-20
DESCRIPTION | 15 +++-- MD5 | 29 ++++++----- NAMESPACE | 5 - NEWS.md | 14 +++++ R/download_data.R | 60 +++++++++++++++++------ README.md | 2 build/vignette.rds |binary inst/doc/njtr1.html | 23 +++++--- inst/extdata/fields/2001 |only inst/extdata/fields/2017/Drivers.csv | 42 ++++++++-------- inst/extdata/fields/2017/Occupants.csv | 28 +++++----- inst/extdata/fields/2017/Pedestrians.csv | 70 +++++++++++++-------------- inst/extdata/fields/2017/Vehicles.csv | 80 +++++++++++++++---------------- man/get_njtr1.Rd | 12 ++-- 14 files changed, 218 insertions(+), 162 deletions(-)
Title: Delineate Region of Interests (ROI's) and Extract Time-Series
Data from Digital Repeat Photography Images
Description: Digital repeat photography and near-surface remote sensing have been used by environmental scientists to study the environmental change for nearly a decade. However, a user-friendly, reliable, and robust platform to extract color-based statistics and time-series from a large stack of images is still lacking. Here, we present an interactive open-source toolkit, called 'xROI', that facilitate the process time-series extraction and improve the quality of the final data. 'xROI' provides a responsive environment for scientists to interactively a) delineate regions of interest (ROI), b) handle field of view (FOV) shifts, and c) extract and export time series data characterizing image color (i.e. red, green and blue channel digital numbers for the defined ROI). Using 'xROI', user can detect FOV shifts without minimal difficulty. The software gives user the opportunity to readjust the mask files or redraw new ones every time an FOV shift occurs. 'xROI' helps to significantly improve data accuracy and continuity.
Author: Bijan Seyednasrollah, Thomas Milliman, Andrew D. Richardson
Maintainer: Bijan Seyednasrollah <bijan.s.nasr@gmail.com>
Diff between xROI versions 0.9.17 dated 2020-07-24 and 0.9.18 dated 2021-04-20
DESCRIPTION | 13 +- MD5 | 16 +- R/addMask.R | 2 R/zzz.R | 18 +++ README.md | 14 +- build/vignette.rds |binary inst/CITATION | 9 - inst/app/app.R | 4 inst/doc/Launch-xROI.html | 251 ++++++---------------------------------------- 9 files changed, 83 insertions(+), 244 deletions(-)
Title: Export Data Frames to Excel 'xlsx' Format
Description: Zero-dependency data frame to xlsx exporter based on 'libxlsxwriter'.
Fast and no Java or Excel required.
Author: Jeroen Ooms [aut, cre] (<https://orcid.org/0000-0002-4035-0289>),
John McNamara [cph] (Author of libxlsxwriter (see AUTHORS and COPYRIGHT
files for details))
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>
Diff between writexl versions 1.3.1 dated 2020-08-26 and 1.4.0 dated 2021-04-20
DESCRIPTION | 9 MD5 | 95 NEWS | 3 src/Makevars | 5 src/include/xlsxwriter.h | 5 src/include/xlsxwriter/app.h | 3 src/include/xlsxwriter/chart.h | 222 + src/include/xlsxwriter/chartsheet.h | 2 src/include/xlsxwriter/comment.h |only src/include/xlsxwriter/common.h | 59 src/include/xlsxwriter/content_types.h | 6 src/include/xlsxwriter/core.h | 2 src/include/xlsxwriter/custom.h | 2 src/include/xlsxwriter/drawing.h | 23 src/include/xlsxwriter/format.h | 97 src/include/xlsxwriter/hash_table.h | 2 src/include/xlsxwriter/packager.h | 4 src/include/xlsxwriter/relationships.h | 2 src/include/xlsxwriter/shared_strings.h | 2 src/include/xlsxwriter/styles.h | 18 src/include/xlsxwriter/theme.h | 2 src/include/xlsxwriter/third_party/ioapi.h | 6 src/include/xlsxwriter/third_party/md5.h |only src/include/xlsxwriter/utility.h | 42 src/include/xlsxwriter/vml.h |only src/include/xlsxwriter/workbook.h | 149 - src/include/xlsxwriter/worksheet.h | 1669 ++++++++++++ src/include/xlsxwriter/xmlwriter.h | 6 src/libxlsxwriter/app.c | 7 src/libxlsxwriter/chart.c | 354 ++ src/libxlsxwriter/chartsheet.c | 2 src/libxlsxwriter/comment.c |only src/libxlsxwriter/content_types.c | 21 src/libxlsxwriter/core.c | 4 src/libxlsxwriter/custom.c | 2 src/libxlsxwriter/drawing.c | 160 + src/libxlsxwriter/format.c | 106 src/libxlsxwriter/hash_table.c | 2 src/libxlsxwriter/packager.c | 318 ++ src/libxlsxwriter/relationships.c | 2 src/libxlsxwriter/shared_strings.c | 6 src/libxlsxwriter/styles.c | 403 ++- src/libxlsxwriter/theme.c | 2 src/libxlsxwriter/utility.c | 37 src/libxlsxwriter/vml.c |only src/libxlsxwriter/workbook.c | 398 ++- src/libxlsxwriter/worksheet.c | 3779 +++++++++++++++++++++++++++-- src/libxlsxwriter/xmlwriter.c | 83 src/md5 |only src/minizip/ioapi.h | 10 src/minizip/zip.h | 10 51 files changed, 7520 insertions(+), 621 deletions(-)
Title: Nonlinear Nonparametric Statistics
Description: Nonlinear nonparametric statistics using partial moments. Partial moments are the elements of variance and asymptotically approximate the area of f(x). These robust statistics provide the basis for nonlinear analysis while retaining linear equivalences. NNS offers: Numerical integration, Numerical differentiation, Clustering, Correlation, Dependence, Causal analysis, ANOVA, Regression, Classification, Seasonality, Autoregressive modeling, Normalization and Stochastic dominance. All routines based on: Viole, F. and Nawrocki, D. (2013), Nonlinear Nonparametric Statistics: Using Partial Moments (ISBN: 1490523995).
Author: Fred Viole
Maintainer: Fred Viole <ovvo.financial.systems@gmail.com>
Diff between NNS versions 0.6.2 dated 2021-03-15 and 0.6.3.1 dated 2021-04-20
NNS-0.6.2/NNS/R/Co_PM_dep.R |only NNS-0.6.2/NNS/man/NNS.dep.hd.Rd |only NNS-0.6.3.1/NNS/DESCRIPTION | 9 NNS-0.6.3.1/NNS/MD5 | 74 - NNS-0.6.3.1/NNS/NAMESPACE | 2 NNS-0.6.3.1/NNS/R/ARMA.R | 26 NNS-0.6.3.1/NNS/R/ARMA_optim.R | 33 NNS-0.6.3.1/NNS/R/Boost.R | 111 +- NNS-0.6.3.1/NNS/R/Copula.R |only NNS-0.6.3.1/NNS/R/Dependence.R | 113 +- NNS-0.6.3.1/NNS/R/Internal_Functions.R | 12 NNS-0.6.3.1/NNS/R/LPM_UPM_VaR.R | 4 NNS-0.6.3.1/NNS/R/Multivariate_Regression.R | 32 NNS-0.6.3.1/NNS/R/NNS_VAR.R | 334 +++---- NNS-0.6.3.1/NNS/R/NNS_term_matrix.R | 10 NNS-0.6.3.1/NNS/R/Partial_Moments.R | 10 NNS-0.6.3.1/NNS/R/Regression.R | 49 - NNS-0.6.3.1/NNS/R/Stack.R | 94 +- NNS-0.6.3.1/NNS/build/vignette.rds |binary NNS-0.6.3.1/NNS/inst/doc/NNSvignette_Classification.Rmd | 8 NNS-0.6.3.1/NNS/inst/doc/NNSvignette_Classification.html | 336 ++------ NNS-0.6.3.1/NNS/inst/doc/NNSvignette_Clustering_and_Regression.Rmd | 2 NNS-0.6.3.1/NNS/inst/doc/NNSvignette_Clustering_and_Regression.html | 330 +------ NNS-0.6.3.1/NNS/inst/doc/NNSvignette_Correlation_and_Dependence.R | 80 - NNS-0.6.3.1/NNS/inst/doc/NNSvignette_Correlation_and_Dependence.Rmd | 95 +- NNS-0.6.3.1/NNS/inst/doc/NNSvignette_Correlation_and_Dependence.html | 420 ++-------- NNS-0.6.3.1/NNS/inst/doc/NNSvignette_Forecasting.html | 384 ++------- NNS-0.6.3.1/NNS/inst/doc/NNSvignette_Partial_Moments.html | 328 +------ NNS-0.6.3.1/NNS/man/LPM.VaR.Rd | 2 NNS-0.6.3.1/NNS/man/NNS.VAR.Rd | 7 NNS-0.6.3.1/NNS/man/NNS.boost.Rd | 15 NNS-0.6.3.1/NNS/man/NNS.copula.Rd |only NNS-0.6.3.1/NNS/man/NNS.dep.Rd | 53 - NNS-0.6.3.1/NNS/man/NNS.stack.Rd | 6 NNS-0.6.3.1/NNS/man/NNS.term.matrix.Rd | 2 NNS-0.6.3.1/NNS/man/PM.matrix.Rd | 8 NNS-0.6.3.1/NNS/man/UPM.VaR.Rd | 2 NNS-0.6.3.1/NNS/vignettes/NNSvignette_Classification.Rmd | 8 NNS-0.6.3.1/NNS/vignettes/NNSvignette_Clustering_and_Regression.Rmd | 2 NNS-0.6.3.1/NNS/vignettes/NNSvignette_Correlation_and_Dependence.Rmd | 95 +- 40 files changed, 1040 insertions(+), 2056 deletions(-)
Title: Bayesian Estimation of the GARCH(1,1) Model with Student-t
Innovations
Description: Provides the bayesGARCH() function which performs the
Bayesian estimation of the GARCH(1,1) model with Student's t innovations as described in Ardia (2008) <doi:10.1007/978-3-540-78657-3>.
Author: David Ardia [aut, cre]
Maintainer: David Ardia <david.ardia.ch@gmail.com>
Diff between bayesGARCH versions 2.1.5 dated 2020-04-20 and 2.1.7 dated 2021-04-20
COPYING | 680 ++++++++++++++++++------------------ DESCRIPTION | 13 MD5 | 30 - NAMESPACE | 2 NEWS | 12 R/functions.R | 102 ++--- R/sampler.R | 920 ++++++++++++++++++++++++------------------------- README |only README.md | 26 - THANKS | 10 build/partial.rdb |binary inst/CITATION | 5 inst/COPYRIGHTS | 2 man/bayesGARCH.Rd | 17 man/dem2gbp.Rd | 3 man/formSmpl.Rd | 84 ++-- src/packagename_init.c |only 17 files changed, 952 insertions(+), 954 deletions(-)
Title: Utilities for Streamlined Data Import, Imputation and Modelling
Description: Provides functions streamlining the data analysis workflow:
Outsourcing data import, renaming and type casting to a *.csv.
Manipulating imputed datasets and fitting models on them. Summarizing models.
Author: J. Peter Marquardt [aut] (<https://orcid.org/0000-0002-5596-1357>),
Till D. Best [aut, cre] (<https://orcid.org/0000-0001-7323-827X>)
Maintainer: Till D. Best <till-best@gmx.de>
Diff between basecamb versions 0.9.0 dated 2021-04-10 and 1.0.1 dated 2021-04-20
DESCRIPTION | 13 - MD5 | 23 +- NAMESPACE | 5 R/Tidy_names_types_factors.R | 311 ++++++++++++++++++++++++-------- R/filter_nth_entry.R |only README.md | 13 - man/apply_data_dictionary.Rd | 33 ++- man/assign_factorial_levels.Rd | 18 + man/assign_types_names.Rd | 79 ++++---- man/dot-find_NA_coercions.Rd |only man/dot-parse_string_to_named_vector.Rd | 4 man/filter_nth_entry.Rd |only man/parse_date_columns.Rd |only tests |only 14 files changed, 361 insertions(+), 138 deletions(-)
Title: Contextualization and Evaluation of COI-5P Barcode Data
Description: Designed for the cleaning, contextualization and assessment of cytochrome c
oxidase I DNA barcode data (COI-5P, or the five prime portion of COI). It contains
functions for placing COI-5P barcode sequences into a common reading frame,
translating DNA sequences to amino acids and for assessing the likelihood that a
given barcode sequence includes an insertion or deletion error. The error assessment
relies on the comparison of input sequences against nucleotide and amino acid profile
hidden Markov models (PHMMs) (for details see Durbin et al. 1998, ISBN: 9780521629713)
trained on a taxonomically diverse set of reference sequences. The functions are
provided as a complete pipeline and are also available individually for efficient and
targeted analysis of barcode data.
Author: Cameron M. Nugent
Maintainer: Cameron M. Nugent <nugentc@uoguelph.ca>
Diff between coil versions 1.2.2 dated 2020-10-29 and 1.2.3 dated 2021-04-20
DESCRIPTION | 6 MD5 | 4 inst/doc/coil-vignette.html | 949 +++++++++++++++++++++----------------------- 3 files changed, 463 insertions(+), 496 deletions(-)
Title: Kinetic Evaluation of Chemical Degradation Data
Description: Calculation routines based on the FOCUS Kinetics Report (2006,
2014). Includes a function for conveniently defining differential equation
models, model solution based on eigenvalues if possible or using numerical
solvers. If a C compiler (on windows: 'Rtools') is installed, differential
equation models are solved using automatically generated C functions. Please
note that no warranty is implied for correctness of results or fitness for a
particular purpose.
Author: Johannes Ranke [aut, cre, cph]
(<https://orcid.org/0000-0003-4371-6538>),
Katrin Lindenberger [ctb] (contributed to mkinresplot()),
René Lehmann [ctb] (ilr() and invilr()),
Eurofins Regulatory AG [cph] (copyright for some of the contributions
of JR 2012-2014)
Maintainer: Johannes Ranke <jranke@uni-bremen.de>
Diff between mkin versions 1.0.3 dated 2021-02-15 and 1.0.4 dated 2021-04-20
DESCRIPTION | 8 MD5 | 42 +-- NEWS.md | 16 - R/mkinparplot.R | 4 R/mmkin.R | 5 R/plot.mixed.mmkin.R | 1 R/plot.mkinfit.R | 4 R/plot.mmkin.R | 3 README.md | 5 build/partial.rdb |binary build/vignette.rds |binary inst/doc/FOCUS_D.html | 66 +---- inst/doc/FOCUS_L.html | 132 ++++------ inst/doc/mkin.html | 74 +---- inst/doc/twa.html | 2 man/mmkin.Rd | 5 tests/figs/plotting/mixed-model-fit-for-mmkin-object.svg | 5 tests/figs/plotting/mixed-model-fit-for-nlme-object.svg | 5 tests/figs/plotting/mkinfit-plot-for-focus-c-with-residuals-like-in-gmkin.svg | 42 +-- tests/figs/plotting/mkinfit-plot-for-focus-c-with-sep-true.svg | 42 +-- tests/figs/plotting/plot-res-for-focus-c.svg | 42 +-- tests/figs/plotting/plot-res-for-focus-d.svg | 98 +++---- 22 files changed, 275 insertions(+), 326 deletions(-)
Title: Journal Abbreviations for BibTeX Documents
Description: Since the reference management software (such as 'Zotero', 'Mendeley') exports Bib file journal abbreviation is not detailed enough, the 'journalabbr' package only abbreviates the journal field of Bib file, and then outputs a new Bib file for generating reference format with journal abbreviation on other software (such as 'texstudio'). The abbreviation table is from 'JabRef'. At the same time, 'Shiny' application is provided to generate 'thebibliography', a reference format that can be directly used for latex paper writing based on 'Rmd' files.
Author: ShuCai Zou [aut, cre],
Yu Chen [aut]
Maintainer: ShuCai Zou <zscmoyujian@163.com>
Diff between journalabbr versions 0.2.2 dated 2020-08-06 and 0.2.5 dated 2021-04-20
DESCRIPTION | 17 - MD5 | 26 +- NAMESPACE | 2 R/abbr2bib.R | 7 R/abbrTable.R | 10 - R/read_bib2tib.R | 4 R/sysdata.rda |binary R/write_tib2bib.R | 8 README.md | 26 ++ inst/shiny-examples/appckwx/MEMIO_default.bib |only inst/shiny-examples/appckwx/app.R | 201 +++++++++++++++++++++ inst/shiny-examples/appckwx/navigation_default.csl |only inst/shiny-examples/appckwx/rmd_finally.Rmd |only inst/shiny-examples/appckwx/rmd_finally.tex |only man/abbrTable.Rd | 9 man/write_tib2bib.Rd | 3 16 files changed, 288 insertions(+), 25 deletions(-)
Title: "Eating the Liver of Data Science"
Description: Provides a collection of helper functions that make various techniques from data science more user-friendly for non-experts. In this way, our aim is to allow non-experts to become familiar with the techniques with only a minimal level of coding knowledge. Indeed, following an ancient Persian idiom, we refer to this as "eating the liver of data science" which could be interpreted as "getting intimately close with data science". Examples of procedures we include are: data partitioning for out-of-sample testing, computing Mean Squared Error (MSE) for quantifying prediction accuracy, and data transformation (z-score and min-max). Besides such helper functions, the package also includes several interesting datasets that are useful for multivariate analysis.
Author: Reza Mohammadi [aut, cre] (<https://orcid.org/0000-0001-9538-0648>),
Kevin Burke [aut]
Maintainer: Reza Mohammadi <a.mohammadi@uva.nl>
Diff between liver versions 1.6 dated 2021-04-06 and 1.7 dated 2021-04-20
DESCRIPTION | 6 ++--- MD5 | 20 +++++++++-------- NAMESPACE | 1 NEWS.md | 13 ++++++++++- R/accuracy.R |only R/conf.mat.R | 20 +++++++++++------ R/conf.mat.plot.R | 32 +++++---------------------- R/kNN.plot.R | 60 ++++++++++++++++++++++++++++++++++++--------------- man/accuracy.Rd |only man/conf.mat.Rd | 11 +++++++-- man/conf.mat.plot.Rd | 5 ++-- man/kNN.plot.Rd | 11 +++++---- 12 files changed, 109 insertions(+), 70 deletions(-)
Title: Import Surface Meteorological Data from NOAA Integrated Surface
Database (ISD)
Description: Functions to import data from more than 30,000 surface
meteorological sites around the world managed by the National Oceanic and Atmospheric Administration (NOAA) Integrated Surface
Database (ISD, see <https://www.ncdc.noaa.gov/isd>).
Author: David Carslaw [aut, cre]
Maintainer: David Carslaw <david.carslaw@york.ac.uk>
Diff between worldmet versions 0.9.4 dated 2021-04-09 and 0.9.5 dated 2021-04-20
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/getMeta.R | 32 ++++++++++++++++---------------- man/getMeta.Rd | 2 +- 4 files changed, 24 insertions(+), 24 deletions(-)
Title: Tidy Tuning Tools
Description: The ability to tune models is important. 'tune' contains functions and
classes to be used in conjunction with other 'tidymodels' packages for
finding reasonable values of hyper-parameters in models, pre-processing
methods, and post-processing steps.
Author: Max Kuhn [aut, cre] (<https://orcid.org/0000-0003-2402-136X>),
RStudio [cph]
Maintainer: Max Kuhn <max@rstudio.com>
Diff between tune versions 0.1.3 dated 2021-02-28 and 0.1.4 dated 2021-04-20
DESCRIPTION | 8 ++++---- MD5 | 30 +++++++++++++++--------------- NAMESPACE | 1 - NEWS.md | 13 +++++++++++-- R/conf_mat_resampled.R | 6 ++++-- R/finalize.R | 16 ++++++---------- R/load_ns.R | 25 ++++--------------------- R/logging.R | 2 +- R/tunable.R | 2 ++ README.md | 27 ++++++++++++++------------- man/conf_mat_resampled.Rd | 5 +++-- man/message_wrap.Rd | 2 +- man/required_pkgs.Rd | 3 --- tests/testthat/test-conf-mat-resampled.R | 2 +- tests/testthat/test-finalization.R | 17 +++++++++++++++++ tests/testthat/test-tunable.R | 5 ++++- 16 files changed, 87 insertions(+), 77 deletions(-)
Title: Spatial and Space-Time Point Pattern Analysis
Description: The Splancs package was written as an enhancement to S-Plus for display and analysis of spatial point pattern data; it has been ported to R and is in "maintenance mode".
Author: Roger Bivand [cre],
Barry Rowlingson [aut],
Peter Diggle [aut],
Giovanni Petris [ctb],
Stephen Eglen [ctb]
Maintainer: Roger Bivand <Roger.Bivand@nhh.no>
Diff between splancs versions 2.01-40 dated 2017-04-16 and 2.01-42 dated 2021-04-20
DESCRIPTION | 10 +-- MD5 | 132 ++++++++++++++++++++++++++-------------------------- man/Fhat.Rd | 4 - man/Fzero.Rd | 4 - man/Ghat.Rd | 4 - man/Kenv.csr.Rd | 4 - man/Kenv.label.Rd | 4 - man/Kenv.tor.Rd | 4 - man/Kenv.tor1.Rd | 2 man/addpoints.Rd | 4 - man/amacrines.Rd | 2 man/areapl.Rd | 4 - man/as.points.Rd | 4 - man/bbox.Rd | 4 - man/bodmin.Rd | 2 man/burkitt.Rd | 2 man/cardiff.Rd | 2 man/csr.Rd | 4 - man/delpoints.Rd | 4 - man/dsquare.Rd | 4 - man/gen.Rd | 4 - man/getpoly.Rd | 4 - man/gridpts.Rd | 4 - man/inout.Rd | 4 - man/inpip.Rd | 4 - man/is.points.Rd | 4 - man/k12hat.Rd | 4 - man/kernel2d.Rd | 4 - man/kernel3d.Rd | 4 - man/kernrat.Rd | 4 - man/kerview.Rd | 4 - man/khat.Rd | 6 +- man/khvc.Rd | 4 - man/khvmat.Rd | 4 - man/mpoint.Rd | 4 - man/mse2d.Rd | 4 - man/n2dist.Rd | 4 - man/nndistF.Rd | 4 - man/nndistG.Rd | 4 - man/npts.Rd | 4 - man/okblack.Rd | 2 man/okwhite.Rd | 2 man/pdense.Rd | 4 - man/pip.Rd | 4 - man/plt.Rd | 4 - man/pointmap.Rd | 4 - man/polymap.Rd | 4 - man/print.ribfit.Rd | 4 - man/ranpts.Rd | 4 - man/rlabel.Rd | 4 - man/rtor.shift.Rd | 4 - man/sbox.Rd | 4 - man/secal.Rd | 4 - man/shift.Rd | 4 - man/splancs.Rd | 4 - man/spoints.Rd | 4 - man/stdiagn.Rd | 4 - man/stkhat.Rd | 4 - man/stmctest.Rd | 4 - man/stsecal.Rd | 4 - man/stvmat.Rd | 4 - man/thin.Rd | 4 - man/tor.shift.Rd | 4 - man/tribble.Rd | 4 - man/triblik.Rd | 4 - man/uganda.Rd | 2 man/zoom.Rd | 4 - 67 files changed, 194 insertions(+), 194 deletions(-)
Title: Recognize and Parse Dates in Various Formats, Including All ISO
8601 Formats
Description: Parse dates automatically, without the need of
specifying a format. Currently it includes the git date parser.
It can also recognize and parse all ISO 8601 formats.
Author: Gábor Csárdi, Linus Torvalds
Maintainer: Gábor Csárdi <csardi.gabor@gmail.com>
Diff between parsedate versions 1.2.0 dated 2019-05-08 and 1.2.1 dated 2021-04-20
parsedate-1.2.0/parsedate/inst |only parsedate-1.2.1/parsedate/DESCRIPTION | 7 ++--- parsedate-1.2.1/parsedate/MD5 | 17 +++++------- parsedate-1.2.1/parsedate/NEWS.md |only parsedate-1.2.1/parsedate/R/parsedate-package.r | 2 - parsedate-1.2.1/parsedate/README.md |only parsedate-1.2.1/parsedate/man/parse_iso_8601.Rd | 2 - parsedate-1.2.1/parsedate/tests/testthat.R | 2 - parsedate-1.2.1/parsedate/tests/testthat/helper.R | 18 ------------- parsedate-1.2.1/parsedate/tests/testthat/test-time-zones.R | 10 +++---- 10 files changed, 19 insertions(+), 39 deletions(-)
Title: Finite Difference Method for Multi-Asset Option Valuation
Description: Efficient finite difference method for valuing European and American multi-asset options.
Author: Michael Eichenberger and Carlo Rosa
Maintainer: Michael Eichenberger <mike.eichenberger@gmail.com>
Diff between multiAssetOptions versions 0.1-1 dated 2015-01-31 and 0.1-2 dated 2021-04-20
DESCRIPTION | 10 MD5 | 20 - NAMESPACE | 3 R/matrixFDM.R | 576 +++++++++++++++++----------------- R/multiAssetOption.R | 332 +++++++++---------- R/plotOptionValues.R | 54 +-- inst/doc/multiAssetOptions-manual.pdf |binary man/matrixFDM.Rd | 99 ++--- man/multiAssetOption.Rd | 4 man/multiAssetOptions-package.Rd | 52 +-- man/nodeSpacer.Rd | 108 +++--- 11 files changed, 628 insertions(+), 630 deletions(-)
More information about multiAssetOptions at CRAN
Permanent link
Title: Call R from R
Description: It is sometimes useful to perform a computation in a
separate R process, without affecting the current R process at all.
This packages does exactly that.
Author: Gábor Csárdi [aut, cre, cph] (<https://orcid.org/0000-0001-7098-9676>),
Winston Chang [aut],
RStudio [cph, fnd],
Mango Solutions [cph, fnd]
Maintainer: Gábor Csárdi <csardi.gabor@gmail.com>
Diff between callr versions 3.6.0 dated 2021-03-28 and 3.7.0 dated 2021-04-20
DESCRIPTION | 10 +-- MD5 | 52 +++++++++---------- NEWS.md | 10 +++ R/error.R | 2 R/errors.R | 107 +++++++++++++++++++++++++++------------- R/hook.R | 5 + R/load-client.R | 50 +++++++++++++----- R/package.R | 1 R/presets.R | 2 R/r-session.R | 4 + R/rscript.R | 2 R/script.R | 11 ++-- R/setup.R | 32 +++++++---- R/utils.R | 5 + README.md | 93 +++++++++++++++------------------- man/r.Rd | 10 +++ man/r_bg.Rd | 10 +++ man/r_process.Rd | 12 ++++ man/r_session.Rd | 14 +++++ man/r_vanilla.Rd | 12 ++++ man/rcmd.Rd | 5 + man/rcmd_process.Rd | 8 ++ man/rscript_process.Rd | 8 ++ tests/testthat/helper.R | 10 --- tests/testthat/test-bugs.R | 14 +---- tests/testthat/test-libpath.R | 32 +++++++++++ tests/testthat/test-r-session.R | 6 -- 27 files changed, 349 insertions(+), 178 deletions(-)
Title: Package for Community Ecology and Suitability Analysis
Description: Graphical User Interface (via the R-Commander) and utility functions (often based on the vegan package) for statistical analysis of biodiversity and ecological communities, including species accumulation curves, diversity indices, Renyi profiles, GLMs for analysis of species abundance and presence-absence, distance matrices, Mantel tests, and cluster, constrained and unconstrained ordination analysis. A book on biodiversity and community ecology analysis is available for free download from the website. In 2012, methods for (ensemble) suitability modelling and mapping were expanded in the package.
Author: Roeland Kindt [cre, aut] (<https://orcid.org/0000-0002-7672-0712>)
Maintainer: Roeland Kindt <R.KINDT@CGIAR.ORG>
Diff between BiodiversityR versions 2.12-3 dated 2020-12-17 and 2.13-1 dated 2021-04-20
BiodiversityR-2.12-3/BiodiversityR/data/BCI.env.txt.gz |only BiodiversityR-2.12-3/BiodiversityR/data/faramea.txt.gz |only BiodiversityR-2.12-3/BiodiversityR/data/ifri.txt.gz |only BiodiversityR-2.12-3/BiodiversityR/data/transfgradient.txt.gz |only BiodiversityR-2.12-3/BiodiversityR/data/transfspecies.txt.gz |only BiodiversityR-2.12-3/BiodiversityR/data/warcom.txt.gz |only BiodiversityR-2.12-3/BiodiversityR/data/warenv.txt.gz |only BiodiversityR-2.12-3/BiodiversityR/inst/doc |only BiodiversityR-2.13-1/BiodiversityR/DESCRIPTION | 10 BiodiversityR-2.13-1/BiodiversityR/MD5 | 57 - BiodiversityR-2.13-1/BiodiversityR/NAMESPACE | 64 - BiodiversityR-2.13-1/BiodiversityR/R/ensemble.PET.seasons.R |only BiodiversityR-2.13-1/BiodiversityR/R/ensemble.blockCV.R |only BiodiversityR-2.13-1/BiodiversityR/R/ensemble.ecocrop.season.R |only BiodiversityR-2.13-1/BiodiversityR/R/sites.long.R | 471 +++++----- BiodiversityR-2.13-1/BiodiversityR/README.md |only BiodiversityR-2.13-1/BiodiversityR/build |only BiodiversityR-2.13-1/BiodiversityR/data/BCI.env.txt |only BiodiversityR-2.13-1/BiodiversityR/data/faramea.txt |only BiodiversityR-2.13-1/BiodiversityR/data/ifri.txt |only BiodiversityR-2.13-1/BiodiversityR/data/transfgradient.txt |only BiodiversityR-2.13-1/BiodiversityR/data/transfspecies.txt |only BiodiversityR-2.13-1/BiodiversityR/data/warcom.txt |only BiodiversityR-2.13-1/BiodiversityR/data/warenv.txt |only BiodiversityR-2.13-1/BiodiversityR/inst/ChangeLog | 24 BiodiversityR-2.13-1/BiodiversityR/man/ensemble.PET.season.Rd | 4 BiodiversityR-2.13-1/BiodiversityR/man/ensemble.PET.seasons.Rd |only BiodiversityR-2.13-1/BiodiversityR/man/ensemble.Rd | 2 BiodiversityR-2.13-1/BiodiversityR/man/ensemble.batch.Rd | 2 BiodiversityR-2.13-1/BiodiversityR/man/ensemble.blockCV.Rd |only BiodiversityR-2.13-1/BiodiversityR/man/ensemble.ecocrop.Rd | 6 BiodiversityR-2.13-1/BiodiversityR/man/ensemble.evaluate.Rd | 6 BiodiversityR-2.13-1/BiodiversityR/man/ensemble.raster.Rd | 3 BiodiversityR-2.13-1/BiodiversityR/man/ensemble.red.Rd | 6 BiodiversityR-2.13-1/BiodiversityR/man/evaluation.strip.Rd | 3 BiodiversityR-2.13-1/BiodiversityR/man/figures |only BiodiversityR-2.13-1/BiodiversityR/man/sites.long.Rd | 65 + 37 files changed, 423 insertions(+), 300 deletions(-)
Title: Inference of Transmission Tree from a Dated Phylogeny
Description: Inference of transmission tree from a dated phylogeny.
Includes methods to simulate and analyse outbreaks.
The methodology is described in
Didelot et al. (2014) <doi:10.1093/molbev/msu121>,
Didelot et al. (2017) <doi:10.1093/molbev/msw275>.
Author: Xavier Didelot [aut, cre] (<https://orcid.org/0000-0003-1885-500X>),
Yuanwei Xu [ctb]
Maintainer: Xavier Didelot <xavier.didelot@gmail.com>
Diff between TransPhylo versions 1.4.4 dated 2020-06-08 and 1.4.5 dated 2021-04-20
DESCRIPTION | 12 +- MD5 | 58 +++++------ R/interpret.R | 69 +++++++------ R/plotTTree2.R | 6 - R/probTTree.R | 13 ++ build/vignette.rds |binary inst/doc/TransPhylo.R | 4 inst/doc/TransPhylo.html | 78 ++++++++++---- inst/doc/infer.R | 36 +++--- inst/doc/infer.html | 156 ++++++++++++++++++----------- inst/doc/multitree.R | 20 +-- inst/doc/multitree.html | 188 +++++++++++++++++++++--------------- inst/doc/simulate.R | 24 ++-- inst/doc/simulate.html | 120 ++++++++++++++-------- man/getGenerationTimeDist.Rd | 9 + man/getIncidentCases.Rd | 11 +- man/getInfectionTimeDist.Rd | 3 man/getSamplingTimeDist.Rd | 9 + man/inferTTree.Rd | 33 ++++-- man/infer_multittree_share_param.Rd | 33 ++++-- man/makeCTreeFromPTree.Rd | 16 ++- man/makeTTree.Rd | 13 ++ man/plot.ttree.Rd | 3 man/plotCTree.Rd | 10 + man/plotTTree.Rd | 3 man/plotTTree2.Rd | 10 + man/probTTree.Rd | 14 ++ man/probTTreeR.Rd | 13 ++ man/simulateOutbreak.Rd | 21 +++- tests/testthat/Rplots.pdf |binary 30 files changed, 625 insertions(+), 360 deletions(-)
Title: Plot Scaled 'ggplot' Representations of Sports Playing Surfaces
Description: Create scaled 'ggplot' representations of playing surfaces.
Playing surfaces are drawn pursuant to rule-book specifications.
This package should be used as a baseline plot for displaying player
tracking data.
Author: Ross Drucker [aut, cre]
Maintainer: Ross Drucker <ross.a.drucker@gmail.com>
Diff between sportyR versions 1.0.0 dated 2021-04-19 and 1.0.1 dated 2021-04-20
sportyR-1.0.0/sportyR/man/wnba_feature_backboard.Rd |only sportyR-1.0.0/sportyR/man/wnba_feature_basket_ring.Rd |only sportyR-1.0.0/sportyR/man/wnba_feature_center_circles.Rd |only sportyR-1.0.0/sportyR/man/wnba_feature_court_apron.Rd |only sportyR-1.0.0/sportyR/man/wnba_feature_court_bground.Rd |only sportyR-1.0.0/sportyR/man/wnba_feature_division_line.Rd |only sportyR-1.0.0/sportyR/man/wnba_feature_endline.Rd |only sportyR-1.0.0/sportyR/man/wnba_feature_free_throw_dashed_semi_circle.Rd |only sportyR-1.0.0/sportyR/man/wnba_feature_free_throw_lane.Rd |only sportyR-1.0.0/sportyR/man/wnba_feature_free_throw_lane_lines.Rd |only sportyR-1.0.0/sportyR/man/wnba_feature_free_throw_semi_circle.Rd |only sportyR-1.0.0/sportyR/man/wnba_feature_lower_defensive_box.Rd |only sportyR-1.0.0/sportyR/man/wnba_feature_net.Rd |only sportyR-1.0.0/sportyR/man/wnba_feature_restricted_area_arc.Rd |only sportyR-1.0.0/sportyR/man/wnba_feature_sideline.Rd |only sportyR-1.0.0/sportyR/man/wnba_feature_substitution_area.Rd |only sportyR-1.0.0/sportyR/man/wnba_feature_team_bench.Rd |only sportyR-1.0.0/sportyR/man/wnba_feature_three_point_line.Rd |only sportyR-1.0.0/sportyR/man/wnba_features_set_colors.Rd |only sportyR-1.0.1/sportyR/DESCRIPTION | 8 - sportyR-1.0.1/sportyR/MD5 | 28 +----- sportyR-1.0.1/sportyR/NEWS.md |only sportyR-1.0.1/sportyR/R/math-functions.R | 17 +++ sportyR-1.0.1/sportyR/tests/testthat/test-shapes.R | 43 ++++++++-- sportyR-1.0.1/sportyR/tests/testthat/test-unit-conversions.R | 4 25 files changed, 65 insertions(+), 35 deletions(-)
Title: Flexible Polyline Encoding
Description: Binding to the C++ implementation of the flexible polyline
encoding by HERE <https://github.com/heremaps/flexible-polyline>. The
flexible polyline encoding is a lossy compressed representation of a list of
coordinate pairs or coordinate triples. The encoding is achieved by:
(1) Reducing the decimal digits of each value;
(2) encoding only the offset from the previous point;
(3) using variable length for each coordinate delta; and
(4) using 64 URL-safe characters to display the result.
Author: Merlin Unterfinger [aut, cre] (<https://orcid.org/0000-0003-2020-2366>),
HERE Europe B.V. [aut, cph] (Flexible polyline encoding C++
implementation)
Maintainer: Merlin Unterfinger <info@munterfinger.ch>
Diff between flexpolyline versions 0.2.1 dated 2021-01-04 and 0.2.2 dated 2021-04-20
DESCRIPTION | 7 MD5 | 36 +- NEWS.md | 85 ++--- R/RcppExports.R | 254 +++++++-------- R/decode_sf.R | 2 R/encode_sf.R | 28 + README.md | 5 build/vignette.rds |binary inst/doc/cpp-binding.R | 72 ++-- inst/doc/cpp-binding.html | 443 ++++++++++++++------------- inst/doc/flexpolyline.R | 68 ++-- inst/doc/flexpolyline.html | 469 ++++++++++++++--------------- inst/doc/sf-support.R | 112 +++---- inst/doc/sf-support.html | 607 +++++++++++++++++++------------------- inst/include/hf/flexpolyline.h | 4 man/encode_sf.Rd | 24 + tests/testthat/test-cpp_binding.R | 47 +- tests/testthat/test-decode_sf.R | 31 - tests/testthat/test-encode_sf.R | 31 + 19 files changed, 1184 insertions(+), 1141 deletions(-)
Title: Lasso, Group Lasso, and Sparse-Group Lasso for Mixed Models
Description: Proximal gradient descent solver for the operators lasso, (fitted)
group lasso, and (fitted) sparse-group lasso. The implementation involves
backtracking line search and warm starts. Input data needs to be clustered/
grouped for each group lasso variant before calling these algorithms.
Author: Jan Klosa [aut, cre],
Noah Simon [ths],
Dörte Wittenburg [ths]
Maintainer: Jan Klosa <klosa@fbn-dummerstorf.de>
Diff between seagull versions 1.0.6 dated 2020-03-25 and 1.1.0 dated 2021-04-20
DESCRIPTION | 20 - MD5 | 45 +-- NAMESPACE | 4 NEWS.md | 21 + R/RcppExports.R | 324 ++++++++++++++++++++++- R/seagull.R | 353 ++++++++++++++++++++++--- README.md | 42 +-- build/vignette.rds |binary inst/doc/seagull.Rmd | 61 +++- inst/doc/seagull.pdf |binary man/genotypes.Rd | 6 man/groups.Rd | 4 man/lambda_max.Rd | 22 + man/lasso_variants.Rd | 419 +++++++++++++++++++----------- man/phenotypes.Rd | 6 man/seagull.Rd | 52 +++ man/seagull_data.Rd | 6 src/RcppExports.cpp | 130 ++++++++- src/lambda_max_fitted_group_lasso.cpp |only src/seagull_fitted_group_lasso.cpp |only src/seagull_fitted_sparse_group_lasso.cpp |only src/seagull_group_lasso.cpp | 169 +++++++++--- src/seagull_lasso.cpp | 169 +++++++++--- src/seagull_sparse_group_lasso.cpp | 175 +++++++++--- vignettes/seagull.Rmd | 61 +++- 25 files changed, 1658 insertions(+), 431 deletions(-)
Title: Multistage Sampling Allocation and PSU Selection
Description: Multivariate optimal allocation for different domains in one and two stages stratified sample design.R2BEAT extends the Neyman (1934) – Tschuprow (1923) allocation method to the case of several variables, adopting a generalization of the Bethel’s proposal (1989). R2BEAT develops this methodology but, moreover, it allows to determine the sample allocation in the multivariate and multi-domains case of estimates for two-stage stratified samples. It also allows to perform Primary Stage Units selection. This package requires the availability of ReGenesees, that can be installed from <https://github.com/DiegoZardetto/ReGenesees>.
Author: Andrea Fasulo,Giulio Barcaroli,Raffaella Cianchetta,Stefano Falorsi,Alessio Guandalini,Daniela Pagliuca,Marco Dionisio Terribili
Maintainer: Andrea Fasulo <fasulo@istat.it>
Diff between R2BEAT versions 1.0.2 dated 2021-01-11 and 1.0.2-1 dated 2021-04-20
R2BEAT-1.0.2-1/R2BEAT/DESCRIPTION | 8 +-- R2BEAT-1.0.2-1/R2BEAT/MD5 | 17 +++---- R2BEAT-1.0.2-1/R2BEAT/R/beatcv.R | 6 +- R2BEAT-1.0.2-1/R2BEAT/R/beth1.R | 6 +- R2BEAT-1.0.2-1/R2BEAT/R/beth2.R | 17 +++++-- R2BEAT-1.0.2-1/R2BEAT/man/beth1.Rd | 26 +++++------ R2BEAT-1.0.2-1/R2BEAT/man/beth2.Rd | 50 +++++++++++------------ R2BEAT-1.0.2-1/R2BEAT/man/check_input.Rd | 2 R2BEAT-1.0.2-1/R2BEAT/man/input_to_beat.2st_1.Rd | 4 - R2BEAT-1.0.2/R2BEAT/inst |only 10 files changed, 72 insertions(+), 64 deletions(-)
Title: Quality Improvement Charts
Description: Functions for making run charts
[Anhoej, Olesen (2014) <doi:10.1371/journal.pone.0113825>] and basic
Shewhart control charts [Mohammed, Worthington, Woodall (2008)
<doi:10.1136/qshc.2004.012047>] for measure and count data.
The main function, qic(), creates run and control charts and has a
simple interface with a rich set of options to control data analysis
and plotting, including options for automatic data aggregation by
subgroups, easy analysis of before-and-after data, exclusion of one
or more data points from analysis, and splitting charts into
sequential time periods.
Missing values and empty subgroups are handled gracefully.
Author: Jacob Anhoej [aut, cre],
Timo Roeder [ctb]
Maintainer: Jacob Anhoej <jacob@anhoej.net>
Diff between qicharts versions 0.5.5 dated 2017-08-28 and 0.5.8 dated 2021-04-20
DESCRIPTION | 18 - MD5 | 30 +- NEWS | 14 + build/vignette.rds |binary inst/doc/controlcharts.R | 24 +- inst/doc/controlcharts.Rmd | 10 inst/doc/controlcharts.html | 508 +++++++++++++++++++++++++------------------- inst/doc/runcharts.R | 18 - inst/doc/runcharts.Rmd | 4 inst/doc/runcharts.html | 267 ++++++++++++++--------- man/paretochart.Rd | 11 man/qic.Rd | 47 +++- man/tcc.Rd | 42 +++ man/trc.Rd | 16 + vignettes/controlcharts.Rmd | 10 vignettes/runcharts.Rmd | 4 16 files changed, 627 insertions(+), 396 deletions(-)
Title: Download and Display Map Tiles
Description: To create maps from tiles, 'maptiles' downloads, composes and
displays tiles from a large number of providers (e.g. 'OpenStreetMap',
'Stamen', 'Esri', 'CARTO', or 'Thunderforest').
Author: Timothée Giraud [cre, aut] (<https://orcid.org/0000-0002-1932-3323>),
Diego Hernangómez [ctb] (<https://orcid.org/0000-0001-8457-4658>),
Robert J. Hijmans [ctb] (<https://orcid.org/0000-0001-5872-2872>)
Maintainer: Timothée Giraud <timothee.giraud@cnrs.fr>
Diff between maptiles versions 0.1.1 dated 2020-11-20 and 0.1.2 dated 2021-04-20
DESCRIPTION | 32 +++++++++++++++++++++++--------- MD5 | 21 +++++++++++---------- NAMESPACE | 4 +++- NEWS.md |only R/get_tiles.R | 41 +++++++++++++++++++++++++++++++++-------- R/sysdata.rda |binary R/tiles.R | 19 ++++++------------- R/zzz.R | 2 +- README.md | 17 +++++++++-------- inst/tinytest/test_get_tiles.R | 6 ++++++ man/get_tiles.Rd | 5 +++-- man/plot_tiles.Rd | 1 + 12 files changed, 96 insertions(+), 52 deletions(-)
Title: Binning and Plotting of Linearly Referenced Data
Description: Short for 'linear binning', the linbin package provides functions
for manipulating, binning, and plotting linearly referenced data. Although
developed for data collected on river networks, it can be used with any interval
or point data referenced to a 1-dimensional coordinate system. Flexible bin
generation and batch processing makes it easy to compute and visualize variables
at multiple scales, useful for identifying patterns within and between variables
and investigating the influence of scale of observation on data interpretation.
Author: Ethan Z. Welty [aut, cre],
Christian E. Torgersen [ctb] (author support and guidance),
Samuel J. Brenkman [ctb] (elwha and quinault datasets),
Jeffrey J. Duda [ctb] (elwha dataset),
Jonathan B. Armstrong [ctb] (fishmotion dataset)
Maintainer: Ethan Z. Welty <ethan.welty+linbin@gmail.com>
Diff between linbin versions 0.1.2 dated 2017-03-14 and 0.1.3 dated 2021-04-20
linbin-0.1.2/linbin/data/datalist |only linbin-0.1.3/linbin/DESCRIPTION | 12 linbin-0.1.3/linbin/MD5 | 66 +- linbin-0.1.3/linbin/NAMESPACE | 5 linbin-0.1.3/linbin/NEWS.md | 5 linbin-0.1.3/linbin/R/datasets.R | 10 linbin-0.1.3/linbin/R/event_creation.R | 47 +- linbin-0.1.3/linbin/R/event_metrics.R | 19 linbin-0.1.3/linbin/R/plot_events.R | 12 linbin-0.1.3/linbin/R/time.R |only linbin-0.1.3/linbin/README.md | 42 + linbin-0.1.3/linbin/build/partial.rdb |only linbin-0.1.3/linbin/build/vignette.rds |binary linbin-0.1.3/linbin/inst/doc/examples.R | 14 linbin-0.1.3/linbin/inst/doc/examples.Rmd | 2 linbin-0.1.3/linbin/inst/doc/examples.html | 375 ++++++++++------- linbin-0.1.3/linbin/inst/doc/introduction.R | 54 +- linbin-0.1.3/linbin/inst/doc/introduction.Rmd | 4 linbin-0.1.3/linbin/inst/doc/introduction.html | 269 +++++++----- linbin-0.1.3/linbin/man/as_events.Rd | 16 linbin-0.1.3/linbin/man/build_function_call.Rd | 10 linbin-0.1.3/linbin/man/elwha.Rd | 6 linbin-0.1.3/linbin/man/event_midpoints.Rd |only linbin-0.1.3/linbin/man/events.Rd | 2 linbin-0.1.3/linbin/man/fishmotion.Rd | 8 linbin-0.1.3/linbin/man/netmap.Rd | 8 linbin-0.1.3/linbin/man/plot_events.Rd | 40 + linbin-0.1.3/linbin/man/plot_events_single.Rd | 28 - linbin-0.1.3/linbin/man/quinault.Rd | 4 linbin-0.1.3/linbin/man/read_events.Rd | 5 linbin-0.1.3/linbin/man/sample_events.Rd | 10 linbin-0.1.3/linbin/man/simple.Rd | 4 linbin-0.1.3/linbin/man/to_date.Rd |only linbin-0.1.3/linbin/man/to_datetime.Rd |only linbin-0.1.3/linbin/tools/README-unnamed-chunk-3-1.png |binary linbin-0.1.3/linbin/vignettes/examples.Rmd | 2 linbin-0.1.3/linbin/vignettes/introduction.Rmd | 4 37 files changed, 681 insertions(+), 402 deletions(-)
Title: Comprehensive TIFF I/O with Full Support for 'ImageJ' TIFF Files
Description: General purpose TIFF file I/O for R users.
Currently the only such package with read and write support for TIFF
files with floating point (real-numbered) pixels, and the only package
that can correctly import TIFF files that were saved from 'ImageJ' and
write TIFF files than can be correctly read by 'ImageJ'
<https://imagej.nih.gov/ij/>. Also supports text image I/O.
Author: Rory Nolan [aut, cre] (<https://orcid.org/0000-0002-5239-4043>),
Kent Johnson [aut],
Simon Urbanek [ctb],
Sergi Padilla-Parra [ths] (<https://orcid.org/0000-0002-8010-9481>),
Jeroen Ooms [rev, ctb] (<https://orcid.org/0000-0002-4035-0289>),
Jon Clayden [rev] (<https://orcid.org/0000-0002-6608-0619>)
Maintainer: Rory Nolan <rorynoolan@gmail.com>
Diff between ijtiff versions 2.2.5 dated 2021-01-14 and 2.2.6 dated 2021-04-20
DESCRIPTION | 9 +++---- MD5 | 20 ++++++++--------- NEWS.md | 7 ++++++ README.md | 3 -- inst/doc/reading-and-writing-images.html | 29 +++++++++++++++--------- inst/doc/text-images.html | 4 +-- inst/doc/the-imagej-problem.html | 15 +++++++++--- man/as_EBImage.Rd | 8 ++++-- tests/testthat.R | 2 - tests/testthat/_snaps/print.md | 10 -------- tools/config/configure.R | 36 +++++++++++++++++++------------ 11 files changed, 81 insertions(+), 62 deletions(-)
Title: Synoptic Climate Classification and Spatial Regionalization of
Environmental Data
Description: Set of functions to compute different types of synoptic classification methods and for analysing their effect on environmental variables. More information about the methods used in Lemus-Canovas et al. 2019 <DOI:10.1016/j.atmosres.2019.01.018>, Martin-Vide et al. 2008 <DOI:10.5194/asr-2-99-2008>, Jenkinson and Collison 1977.
Author: Marc Lemus-Canovas [aut, cre] (<https://orcid.org/0000-0002-0925-3827>),
Dominic Roye [ctb] (<https://orcid.org/0000-0002-5516-6396>)
Maintainer: Marc Lemus-Canovas <mlemus@ub.edu>
Diff between synoptReg versions 1.1.0 dated 2020-11-20 and 1.2.0 dated 2021-04-20
DESCRIPTION | 17 +++-- MD5 | 17 +++-- NAMESPACE | 5 + R/globals.R |only R/lamb_clas.R | 40 ++++++++++---- R/som_clas.R |only R/synoptclas.R | 154 +++++++++++++++++++++++++++++++++++++++--------------- R/tidy_nc.R | 6 +- man/lamb_clas.Rd | 13 +++- man/som_clas.Rd |only man/synoptclas.Rd | 12 +--- 11 files changed, 186 insertions(+), 78 deletions(-)
Title: General Equilibrium Modeling
Description: Some tools for developing general equilibrium models and some general equilibrium models. These models can be used for teaching economic theory and are built by the methods of new structural economics (see <https://www.nse.pku.edu.cn/> and LI Wu, 2019, ISBN: 9787521804225, General Equilibrium and Structural Dynamics: Perspectives of New Structural Economics. Beijing: Economic Science Press). The model form and mathematical methods can be traced back to von Neumann, J. (1945, A Model of General Economic Equilibrium. The Review of Economic Studies, 13. pp. 1-9) and Kemeny, J. G., O. Morgenstern and G. L. Thompson (1956, A Generalization of the von Neumann Model of an Expanding Economy, Econometrica, 24, pp. 115-135) et al. By the way, J. G. Kemeny is a co-inventor of the computer language BASIC.
Author: LI Wu <liwu@staff.shu.edu.cn>
Maintainer: LI Wu <liwu@staff.shu.edu.cn>
Diff between GE versions 0.1.6 dated 2020-11-25 and 0.1.8 dated 2021-04-20
DESCRIPTION | 7 +++---- MD5 | 6 +++--- R/node_print.R | 2 +- man/CES.Rd | 1 + 4 files changed, 8 insertions(+), 8 deletions(-)
Title: Modular Leaf Ordering Methods for Dendrogram Nodes
Description: An implementation of functions to optimize ordering of nodes in a dendrogram, without affecting the meaning of the dendrogram. A dendrogram can be sorted based on the average distance of subtrees, or based on the smallest distance value. These sorting methods improve readability and interpretability of tree structure, especially for tasks such as comparison of different distance measures or linkage types and identification of tight clusters and outliers. As a result, it also introduces more meaningful reordering for a coupled heatmap visualization. This method is described in "dendsort: modular leaf ordering methods for dendrogram representations in R", F1000Research 2014, 3: 177 <doi:10.12688/f1000research.4784.1>.
Author: Ryo Sakai [aut],
Evan Biederstedt [cre, aut]
Maintainer: Evan Biederstedt <evan.biederstedt@gmail.com>
Diff between dendsort versions 0.3.3 dated 2015-12-14 and 0.3.4 dated 2021-04-20
DESCRIPTION | 32 - MD5 | 44 +- README.md |only build/vignette.rds |binary inst/doc/example_figures.R | 45 +- inst/doc/example_figures.Rmd | 73 +--- inst/doc/example_figures.html | 715 +++++++++++++++++------------------------- man/cal_length.Rd | 1 man/cal_node_limit.Rd | 1 man/cal_total_length.Rd | 1 man/dendsort-package.Rd | 1 man/dendsort.Rd | 1 man/sample_tcga.Rd | 5 man/sort_average.Rd | 1 man/sort_average_r.Rd | 1 man/sort_smallest.Rd | 1 man/sort_smallest_r.Rd | 1 vignettes/example_figures.Rmd | 73 +--- vignettes/example_figures.md |only vignettes/figure_dendsort |only 20 files changed, 420 insertions(+), 576 deletions(-)
Title: Access Databases from the Federal Statistical Office of Germany
Description: Retrieve and import data from different databases of the Federal Statistical Office of Germany (DESTATIS) using their SOAP XML web service <https://www-genesis.destatis.de/>.
Author: Moritz Marbach <moritz.marbach@tamu.edu> [aut, cre]
Maintainer: Moritz Marbach <moritz.marbach@tamu.edu>
Diff between wiesbaden versions 1.2.3 dated 2020-06-18 and 1.2.4 dated 2021-04-20
wiesbaden-1.2.3/wiesbaden/inst/doc/using-wiesbaden.R |only wiesbaden-1.2.3/wiesbaden/inst/doc/using-wiesbaden.Rmd |only wiesbaden-1.2.3/wiesbaden/inst/doc/using-wiesbaden.html |only wiesbaden-1.2.3/wiesbaden/vignettes/using-wiesbaden.Rmd |only wiesbaden-1.2.4/wiesbaden/DESCRIPTION | 15 ++++---- wiesbaden-1.2.4/wiesbaden/MD5 | 28 ++++++++-------- wiesbaden-1.2.4/wiesbaden/NEWS.md | 6 +++ wiesbaden-1.2.4/wiesbaden/R/download_csv.R | 4 +- wiesbaden-1.2.4/wiesbaden/R/read_gv100.R | 2 - wiesbaden-1.2.4/wiesbaden/R/retrieve_datalist.R | 4 +- wiesbaden-1.2.4/wiesbaden/R/test_login.R | 2 - wiesbaden-1.2.4/wiesbaden/build/vignette.rds |binary wiesbaden-1.2.4/wiesbaden/inst/doc/wiesbaden.R |only wiesbaden-1.2.4/wiesbaden/inst/doc/wiesbaden.Rmd |only wiesbaden-1.2.4/wiesbaden/inst/doc/wiesbaden.html |only wiesbaden-1.2.4/wiesbaden/man/download_csv.Rd | 4 +- wiesbaden-1.2.4/wiesbaden/man/read_gv100.Rd | 2 - wiesbaden-1.2.4/wiesbaden/man/retrieve_datalist.Rd | 4 +- wiesbaden-1.2.4/wiesbaden/vignettes/wiesbaden.Rmd |only 19 files changed, 38 insertions(+), 33 deletions(-)
Title: Lioness Algorithm (LA)
Description: Contains Lioness Algorithm (LA) for finding optimal designs over continuous design space, optimal Latin hypercube designs, and optimal order-of-addition designs. LA is a brand new nature-inspired meta-heuristic optimization algorithm. Detailed methodologies of LA and its implementation on numerical simulations can be found at Hongzhi Wang, Qian Xiao and Abhyuday Mandal (2021) <arXiv:2010.09154>.
Author: Hongzhi Wang [aut, cre],
Qian Xiao [aut],
Abhyuday Mandal [aut]
Maintainer: Hongzhi Wang <hw34508@uga.edu>
Diff between LA versions 0.1.0 dated 2021-04-15 and 0.1.1 dated 2021-04-20
DESCRIPTION | 10 +- MD5 | 5 - NEWS.md |only inst/doc/Vignette_for_LA.html | 144 +++++++++++++++++++++--------------------- 4 files changed, 80 insertions(+), 79 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-10-12 1.0.3
2015-10-03 1.0.2
2015-06-15 1.0.1
2015-04-16 1.0.0
2014-08-29 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-09-03 1.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-10-25 0.1.0
Title: Create, Modify and Analyse Phylogenetic Trees
Description: Efficient implementations of functions for the creation,
modification and analysis of phylogenetic trees.
Applications include:
generation of trees with specified shapes;
analysis of tree shape;
rooting of trees and extraction of subtrees;
calculation and depiction of node support;
calculation of ancestor-descendant relationships;
import and export of trees from Newick, Nexus (Maddison et al. 1997)
<doi:10.1093/sysbio/46.4.590>,
and TNT <http://www.lillo.org.ar/phylogeny/tnt/> formats;
and analysis of splits and cladistic information.
Author: Martin R. Smith [aut, cre, cph]
(<https://orcid.org/0000-0001-5660-1727>),
Emmanuel Paradis [cph] (<https://orcid.org/0000-0003-3092-2199>)
Maintainer: Martin R. Smith <martin.smith@durham.ac.uk>
Diff between TreeTools versions 1.4.3 dated 2021-04-12 and 1.4.4 dated 2021-04-20
DESCRIPTION | 6 +- MD5 | 28 ++++++------ NAMESPACE | 1 NEWS.md | 6 ++ R/tree_properties.R | 6 ++ R/tree_rearrangement.R | 6 +- build/partial.rdb |binary inst/doc/filesystem-navigation.html | 4 - inst/doc/load-data.html | 4 - inst/doc/load-trees.html | 4 - man/MakeTreeBinary.Rd | 5 +- man/NTip.Rd | 3 + man/as.multiPhylo.Rd | 78 +++++++++++++++++----------------- tests/testthat/test-tree_properties.R | 1 tests/testthat/test-tree_rearrange.R | 11 ---- 15 files changed, 85 insertions(+), 78 deletions(-)
Title: Tools for Statistical Content Analysis
Description: A framework for statistical analysis in content analysis. In addition to a pipeline for preprocessing text corpora and linking to the latent Dirichlet allocation from the 'lda' package, plots are offered for the descriptive analysis of text corpora and topic models. In addition, an implementation of Chang's intruder words and intruder topics is provided. Sample data for the vignette is included in the toscaData package, which is available on gitHub: <https://github.com/Docma-TU/toscaData>.
Author: Lars Koppers [aut, cre] (<https://orcid.org/0000-0002-1642-9616>),
Jonas Rieger [aut] (<https://orcid.org/0000-0002-0007-4478>),
Karin Boczek [ctb] (<https://orcid.org/0000-0003-1516-4094>),
Gerret von Nordheim [ctb] (<https://orcid.org/0000-0001-7553-3838>)
Maintainer: Lars Koppers <koppers@statistik.tu-dortmund.de>
Diff between tosca versions 0.2-0 dated 2020-03-10 and 0.3-1 dated 2021-04-20
tosca-0.2-0/tosca/R/wikinews.R |only tosca-0.2-0/tosca/data |only tosca-0.2-0/tosca/man/wikinews.Rd |only tosca-0.3-1/tosca/DESCRIPTION | 17 tosca-0.3-1/tosca/MD5 | 245 tosca-0.3-1/tosca/NAMESPACE | 153 tosca-0.3-1/tosca/R/LDAgen.R | 214 tosca-0.3-1/tosca/R/LDAprep.R | 134 tosca-0.3-1/tosca/R/as.corpus.textmeta.R | 114 tosca-0.3-1/tosca/R/as.meta.R | 110 tosca-0.3-1/tosca/R/as.textmeta.corpus.R | 248 tosca-0.3-1/tosca/R/cleanTexts.R | 254 tosca-0.3-1/tosca/R/clusterTopics.R | 112 tosca-0.3-1/tosca/R/deleteAndRenameDuplicates.R | 299 tosca-0.3-1/tosca/R/duplist.R | 384 tosca-0.3-1/tosca/R/filterCount.R | 130 tosca-0.3-1/tosca/R/filterDate.R | 146 tosca-0.3-1/tosca/R/filterID.R | 104 tosca-0.3-1/tosca/R/filterWord.R | 256 tosca-0.3-1/tosca/R/intruderTopics.R | 332 tosca-0.3-1/tosca/R/intruderWords.R | 266 tosca-0.3-1/tosca/R/makeWordlist.R | 102 tosca-0.3-1/tosca/R/mergeLDA.R | 96 tosca-0.3-1/tosca/R/mergeTextmeta.R | 160 tosca-0.3-1/tosca/R/plotArea.R | 257 tosca-0.3-1/tosca/R/plotFreq.R | 472 tosca-0.3-1/tosca/R/plotHeat.R | 222 tosca-0.3-1/tosca/R/plotScot.R | 312 tosca-0.3-1/tosca/R/plotTopic.R | 406 tosca-0.3-1/tosca/R/plotTopicWord.R | 594 - tosca-0.3-1/tosca/R/plotWordSub.R | 438 tosca-0.3-1/tosca/R/plotWordpt.R | 608 - tosca-0.3-1/tosca/R/precisionrecall.R | 156 tosca-0.3-1/tosca/R/readTextmeta.R | 314 tosca-0.3-1/tosca/R/readWhatsApp.R | 316 tosca-0.3-1/tosca/R/readWiki.R | 154 tosca-0.3-1/tosca/R/readWikinews.R | 150 tosca-0.3-1/tosca/R/removeXML.R | 4902 +++++----- tosca-0.3-1/tosca/R/sampling.R | 290 tosca-0.3-1/tosca/R/showMeta.R | 100 tosca-0.3-1/tosca/R/showTexts.R | 114 tosca-0.3-1/tosca/R/textmeta.R | 356 tosca-0.3-1/tosca/R/tidy.textmeta.R | 220 tosca-0.3-1/tosca/R/topTexts.R | 124 tosca-0.3-1/tosca/R/topWords.R | 150 tosca-0.3-1/tosca/R/topicCoherence.R | 114 tosca-0.3-1/tosca/R/topicsInText.R | 210 tosca-0.3-1/tosca/build/vignette.rds |binary tosca-0.3-1/tosca/inst/CITATION | 36 tosca-0.3-1/tosca/inst/doc/Vignette.R | 286 tosca-0.3-1/tosca/inst/doc/Vignette.Rmd | 1178 +- tosca-0.3-1/tosca/inst/doc/Vignette.pdf |binary tosca-0.3-1/tosca/man/LDAgen.Rd | 2 tosca-0.3-1/tosca/man/as.corpus.textmeta.Rd | 9 tosca-0.3-1/tosca/man/clusterTopics.Rd | 4 tosca-0.3-1/tosca/man/deleteAndRenameDuplicates.Rd | 30 tosca-0.3-1/tosca/man/intruderTopics.Rd | 2 tosca-0.3-1/tosca/man/intruderWords.Rd | 2 tosca-0.3-1/tosca/man/mergeLDA.Rd | 6 tosca-0.3-1/tosca/man/plotArea.Rd | 2 tosca-0.3-1/tosca/man/plotFreq.Rd | 2 tosca-0.3-1/tosca/man/plotHeat.Rd | 2 tosca-0.3-1/tosca/man/plotScot.Rd | 6 tosca-0.3-1/tosca/man/plotTopic.Rd | 2 tosca-0.3-1/tosca/man/plotTopicWord.Rd | 2 tosca-0.3-1/tosca/man/plotWordSub.Rd | 2 tosca-0.3-1/tosca/man/plotWordpt.Rd | 2 tosca-0.3-1/tosca/man/readTextmeta.Rd | 18 tosca-0.3-1/tosca/man/readWiki.Rd | 2 tosca-0.3-1/tosca/man/topTexts.Rd | 4 tosca-0.3-1/tosca/man/topWords.Rd | 16 tosca-0.3-1/tosca/man/topicCoherence.Rd | 4 tosca-0.3-1/tosca/man/topicsInText.Rd | 2 tosca-0.3-1/tosca/tests/run-all.R | 20 tosca-0.3-1/tosca/tests/testthat/data/WhatsApp/WhatsApp1.html | 334 tosca-0.3-1/tosca/tests/testthat/data/WhatsApp/WhatsApp2.html | 352 tosca-0.3-1/tosca/tests/testthat/data/Wikinews/Wikinews1.xml | 632 - tosca-0.3-1/tosca/tests/testthat/data/Wikinews/Wikinews2.xml | 382 tosca-0.3-1/tosca/tests/testthat/data/plotArea.RData |binary tosca-0.3-1/tosca/tests/testthat/data/readTextmeta.csv | 16 tosca-0.3-1/tosca/tests/testthat/data/test-k3i20b70s24602alpha0.33eta0.33_orig.csv | 24 tosca-0.3-1/tosca/tests/testthat/data/tm.RData |binary tosca-0.3-1/tosca/tests/testthat/data/topicsInText.csv | 292 tosca-0.3-1/tosca/tests/testthat/test_LDAgen.R | 86 tosca-0.3-1/tosca/tests/testthat/test_LDAprep.R | 32 tosca-0.3-1/tosca/tests/testthat/test_as.corpus.textmeta.R | 34 tosca-0.3-1/tosca/tests/testthat/test_as.meta.R | 30 tosca-0.3-1/tosca/tests/testthat/test_as.textmeta.corpus.R | 42 tosca-0.3-1/tosca/tests/testthat/test_cleanTexts.R | 124 tosca-0.3-1/tosca/tests/testthat/test_clusterTopics.R | 30 tosca-0.3-1/tosca/tests/testthat/test_duplist.R | 205 tosca-0.3-1/tosca/tests/testthat/test_filterCount.R | 70 tosca-0.3-1/tosca/tests/testthat/test_filterDate.R | 38 tosca-0.3-1/tosca/tests/testthat/test_filterID.R | 74 tosca-0.3-1/tosca/tests/testthat/test_filterWord.R | 220 tosca-0.3-1/tosca/tests/testthat/test_intruderTopics.R | 110 tosca-0.3-1/tosca/tests/testthat/test_intruderWords.R | 110 tosca-0.3-1/tosca/tests/testthat/test_makeWordlist.R | 72 tosca-0.3-1/tosca/tests/testthat/test_mergeLDA.R | 66 tosca-0.3-1/tosca/tests/testthat/test_mergeTextmeta.R | 42 tosca-0.3-1/tosca/tests/testthat/test_plotArea.R | 59 tosca-0.3-1/tosca/tests/testthat/test_plotFreq.R | 80 tosca-0.3-1/tosca/tests/testthat/test_plotHeat.R | 80 tosca-0.3-1/tosca/tests/testthat/test_plotScot.R | 64 tosca-0.3-1/tosca/tests/testthat/test_plotTopic.R | 84 tosca-0.3-1/tosca/tests/testthat/test_plotTopicWord.R | 98 tosca-0.3-1/tosca/tests/testthat/test_plotWordSub.R | 148 tosca-0.3-1/tosca/tests/testthat/test_plotWordpt.R | 98 tosca-0.3-1/tosca/tests/testthat/test_precisionrecall.R | 70 tosca-0.3-1/tosca/tests/testthat/test_readTextmeta.R | 84 tosca-0.3-1/tosca/tests/testthat/test_readWhatsApp.R | 50 tosca-0.3-1/tosca/tests/testthat/test_readWiki.R | 30 tosca-0.3-1/tosca/tests/testthat/test_readWikinews.R | 58 tosca-0.3-1/tosca/tests/testthat/test_removeXML.R | 148 tosca-0.3-1/tosca/tests/testthat/test_sampling.R | 50 tosca-0.3-1/tosca/tests/testthat/test_showMeta.R | 26 tosca-0.3-1/tosca/tests/testthat/test_showTexts.R | 34 tosca-0.3-1/tosca/tests/testthat/test_textmeta.R | 68 tosca-0.3-1/tosca/tests/testthat/test_tidy.textmeta.R | 86 tosca-0.3-1/tosca/tests/testthat/test_topTexts.R | 60 tosca-0.3-1/tosca/tests/testthat/test_topWords.R | 44 tosca-0.3-1/tosca/tests/testthat/test_topicCoherence.R | 42 tosca-0.3-1/tosca/tests/testthat/test_topicsInText.R | 86 tosca-0.3-1/tosca/vignettes/Vignette.Rmd | 1178 +- 124 files changed, 11331 insertions(+), 11407 deletions(-)
Title: Tidy Structural Equation Modeling
Description: A tidy workflow for generating, estimating, reporting,
and plotting structural equation models using 'lavaan' or 'Mplus'.
Throughout this workflow, elements of syntax, results, and graphs are
represented as 'tidy' data, making them easy to customize.
Author: Caspar J. van Lissa [aut, cre]
(<https://orcid.org/0000-0002-0808-5024>)
Maintainer: Caspar J. van Lissa <c.j.vanlissa@uu.nl>
Diff between tidySEM versions 0.1.8 dated 2021-03-13 and 0.1.9 dated 2021-04-20
DESCRIPTION | 9 ++++----- MD5 | 24 ++++++++++++------------ NAMESPACE | 3 +++ R/plot-generate_layout.R | 10 ++++++++-- R/plot-plot_sem.R | 33 +++++++++++++++++++++++++++------ R/syntax-create_scales.R | 2 -- R/syntax-get_data.R | 16 ++++++++-------- inst/doc/Plotting_graphs.Rmd | 2 +- inst/doc/Plotting_graphs.html | 16 ++++++++-------- inst/doc/sem_graph.html | 4 ++-- man/graph_sem.Rd | 9 +++++++++ man/prepare_graph.Rd | 9 +++++++++ vignettes/Plotting_graphs.Rmd | 2 +- 13 files changed, 92 insertions(+), 47 deletions(-)
Title: Extension to 'spatstat' for Local Composite Likelihood
Description: Extension to the 'spatstat' package, enabling the user
to fit point process models to point pattern data
by local composite likelihood ('geographically weighted
regression').
Author: Adrian Baddeley [aut, cre]
Maintainer: Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>
Diff between spatstat.local versions 4.1-0 dated 2021-03-31 and 4.1-1 dated 2021-04-20
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- NEWS | 13 +++++++++++++ man/locmincon.Rd | 2 +- man/methods.locppm.Rd | 2 +- man/plot.loccit.Rd | 5 +++-- man/plot.locmincon.Rd | 5 +++-- man/plot.locppm.Rd | 5 +++-- 8 files changed, 35 insertions(+), 19 deletions(-)
More information about spatstat.local at CRAN
Permanent link
Title: Interactive Studio for Explanatory Model Analysis
Description: Automate the explanatory analysis of machine learning predictive models.
Generate advanced interactive model explanations in the form of a serverless HTML
site with only one line of code. This tool is model agnostic, therefore compatible
with most of the black box predictive models and frameworks. The main function
computes various (instance and dataset level) model explanations and produces
a customisable dashboard, which consists of multiple panels for plots with their
short descriptions. Easily save the dashboard and share it with others. Tools
for Explanatory Model Analysis unite with tools for Exploratory Data Analysis
to give a broad overview of the model behavior.
Author: Hubert Baniecki [aut, cre] (<https://orcid.org/0000-0001-6661-5364>),
Przemyslaw Biecek [aut] (<https://orcid.org/0000-0001-8423-1823>),
Piotr Piatyszek [ctb]
Maintainer: Hubert Baniecki <hbaniecki@gmail.com>
Diff between modelStudio versions 2.1.1 dated 2021-01-07 and 2.1.2 dated 2021-04-20
DESCRIPTION | 7 MD5 | 14 NEWS.md | 3 R/modelStudio.R | 4 R/prepare.R | 2 build/vignette.rds |binary inst/doc/ms-perks-features.html | 595 +++++--------------- inst/doc/ms-r-python-examples.html | 1095 ++++++++++++++----------------------- 8 files changed, 616 insertions(+), 1104 deletions(-)
Title: Genetic Linkage Maps in Autopolyploids
Description: Construction of genetic maps in autopolyploid full-sib populations.
Uses pairwise recombination fraction estimation as the first
source of information to sequentially position allelic variants
in specific homologues. For situations where pairwise analysis has
limited power, the algorithm relies on the multilocus likelihood
obtained through a hidden Markov model (HMM). For more detail,
please see Mollinari and Garcia (2019) <doi:10.1534/g3.119.400378>
and Mollinari et al. (2020) <doi:10.1534/g3.119.400620>.
Author: Marcelo Mollinari [aut, cre] (<https://orcid.org/0000-0002-7001-8498>),
Gabriel Gesteira [aut] (<https://orcid.org/0000-0002-4106-7346>),
Guilhereme Pereira [ctb] (<https://orcid.org/0000-0002-7106-8630>),
Augusto Garcia [ctb] (<https://orcid.org/0000-0003-0634-3277>),
Zhao-Bang Zeng [ctb] (<https://orcid.org/0000-0002-3115-1149>),
Katharine Preedy [ctb, cph] (MDS ordering algorithm),
Robert Gentleman [cph] (C code for MLE optimization in
src/pairwise_estimation.cpp),
Ross Ihaka [cph] (C code for MLE optimization in
src/pairwise_estimation.cpp),
R Foundation [cph] (C code for MLE optimization in
src/pairwise_estimation.cpp),
R-core [cph] (C code for MLE optimization in
src/pairwise_estimation.cpp)
Maintainer: Marcelo Mollinari <mmollin@ncsu.edu>
Diff between mappoly versions 0.2.1 dated 2020-11-23 and 0.2.3 dated 2021-04-20
DESCRIPTION | 15 - MD5 | 208 +++++++-------- NAMESPACE | 13 NEWS.md | 9 R/RcppExports.R | 5 R/cache_twopts.R | 2 R/calc_genoprob.R | 2 R/calc_genoprob_dist.R | 2 R/calc_genoprob_error.R | 2 R/check_phase_configurations.R | 7 R/eliminate_redundant.R | 2 R/est_map_hmm.R | 90 ++++-- R/export_map_list.R | 2 R/get_submap.R | 2 R/group.R | 2 R/haplotype_map_utils.R | 94 ++++--- R/homolog_probs.R | 9 R/import_from_polymapR.R | 49 --- R/import_from_updog.R | 6 R/loglike_hmm.R | 2 R/make_mat.R | 2 R/make_pairs.R | 2 R/make_seq.R | 27 +- R/marker_info.R | 4 R/mds.R | 8 R/merge_maps.R | 11 R/pairwise_rf.R | 2 R/plot_genome_vs_map.R | 7 R/plot_map_list.R | 2 R/poly_cross_simulate.R | 2 R/preferential_pairing.R | 2 R/read_fitpoly.R | 33 +- R/read_mappoly.R | 4 R/read_mappoly_csv.R | 4 R/read_mappoly_prob.R | 4 R/read_mappoly_vcf.R | 268 ++++++++++++-------- R/reestimate_map.R | 4 R/reestimate_map_with_global_genotypic_error.R | 2 R/reestimate_map_with_prior_genotypic_probability.R | 2 R/rf_list_to_matrix.R | 2 R/rf_snp_filter.R | 4 R/segreg_poly.R | 4 R/sim_homologous.R | 2 R/single_map_hmm.R | 4 R/split_and_rephase.R | 2 R/utils.R | 121 ++++++--- README.md | 30 +- build |only man/cache_counts_twopt.Rd | 2 man/calc_genoprob.Rd | 2 man/calc_genoprob_dist.Rd | 2 man/calc_genoprob_error.Rd | 2 man/calc_genoprob_haplo.Rd | 3 man/calc_homoprob.Rd | 2 man/calc_prefpair_profiles.Rd | 2 man/check_data_sanity.Rd | 2 man/elim_redundant.Rd | 2 man/est_full_hmm_with_global_error.Rd | 2 man/est_full_hmm_with_prior_prob.Rd | 2 man/est_haplo_hmm.Rd | 5 man/est_pairwise_rf.Rd | 2 man/est_rf_hmm.Rd | 4 man/est_rf_hmm_sequential.Rd | 2 man/est_rf_hmm_single.Rd | 4 man/export_data_to_polymapR.Rd | 17 - man/export_map_list.Rd | 2 man/get_genomic_order.Rd | 17 + man/get_submap.Rd | 2 man/group_mappoly.Rd | 2 man/import_data_from_polymapR.Rd | 14 - man/import_from_updog.Rd | 4 man/import_phased_maplist_from_polymapR.Rd | 27 -- man/loglike_hmm.Rd | 2 man/ls_linkage_phases.Rd | 7 man/make_mat_mappoly.Rd | 2 man/make_pairs_mappoly.Rd | 2 man/make_seq_mappoly.Rd | 8 man/mds_mappoly.Rd | 8 man/merge_datasets.Rd | 2 man/plot.mappoly.homoprob.Rd | 2 man/plot_GIC.Rd |only man/plot_genome_vs_map.Rd | 7 man/plot_map_list.Rd | 2 man/plot_mrk_info.Rd | 2 man/poly_cross_simulate.Rd | 2 man/read_fitpoly.Rd | 4 man/read_geno.Rd | 4 man/read_geno_csv.Rd | 4 man/read_geno_prob.Rd | 4 man/read_vcf.Rd | 18 + man/reest_rf.Rd | 4 man/rf_list_to_matrix.Rd | 2 man/rf_snp_filter.Rd | 4 man/segreg_poly.Rd | 4 man/sim_homologous.Rd | 2 man/split_and_rephase.Rd | 2 src/RcppExports.cpp | 17 + src/calc_genoprob_based_on_phased_marker_blocks.cpp | 128 +++++++++ src/calc_genoprob_based_on_phased_marker_blocks.h | 9 src/est_hmm_map_based_on_phased_mrk_blocks.cpp | 245 +++++++++++++++++- src/est_hmm_map_based_on_phased_mrk_blocks.h | 9 src/hmm_elements.cpp | 125 ++++++--- src/hmm_elements.h | 14 + src/read_mappoly_vcf.cpp | 111 ++++++++ tests/testthat.R | 9 tests/testthat/test-utility_func.R | 23 - 106 files changed, 1382 insertions(+), 613 deletions(-)
Title: Identification of Parental Lines via Genomic Prediction
Description: Combining genomic prediction with Monte Carlo simulation, three different
strategies are implemented to select parental lines for multiple traits in plant
breeding. The selection strategies include (i) GEBV-O considers only genomic
estimated breeding values (GEBVs) of the candidate individuals; (ii) GD-O
considers only genomic diversity (GD) of the candidate individuals; and (iii)
GEBV-GD considers both GEBV and GD. The above method can be seen in Chung PY,
Liao CT (2020) <doi:10.1371/journal.pone.0243159>. Multi-trait genomic best
linear unbiased prediction (MT-GBLUP) model is used to simultaneously estimate
GEBVs of the target traits, and then a selection index is adopted to evaluate
the composite performance of an individual.
Author: Ping-Yuan Chung [cre],
Chen-Tuo Liao [aut]
Maintainer: Ping-Yuan Chung <r06621204@ntu.edu.tw>
Diff between IPLGP versions 0.1.0 dated 2021-02-17 and 1.1.0 dated 2021-04-20
DESCRIPTION | 7 +-- MD5 | 28 ++++++------ R/GA.Dscore.R | 2 R/GBLUP.fit.R | 91 +++++++++++++++++++++++++++++------------ R/output.best.R | 115 ++++++++++++++++++++++++++++------------------------- R/output.gain.R | 108 ++++++++++++++++++++++++++----------------------- R/simu.GDO.R | 51 +++++++++++++++++------ R/simu.GEBVGD.R | 91 +++++++++++++++++++++++------------------ R/simu.GEBVO.R | 110 ++++++++++++++++++++++++++++---------------------- man/GBLUP.fit.Rd | 28 ++++++++++-- man/output.best.Rd | 12 +++-- man/output.gain.Rd | 12 +++-- man/simu.GDO.Rd | 36 +++++++++++++--- man/simu.GEBVGD.Rd | 43 +++++++++++++++---- man/simu.GEBVO.Rd | 44 +++++++++++++++----- 15 files changed, 491 insertions(+), 287 deletions(-)
Title: Explore and Visualize Your Data Interactively
Description: A 'shiny' gadget to create 'ggplot2' figures interactively with drag-and-drop to map your variables to different aesthetics.
You can quickly visualize your data accordingly to their type, export in various formats,
and retrieve the code to reproduce the plot.
Author: Fanny Meyer [aut],
Victor Perrier [aut, cre],
Ian Carroll [ctb] (Faceting support),
Xiangnan Dang [ctb] (Facets rows and cols, X/Y limits)
Maintainer: Victor Perrier <victor.perrier@dreamrs.fr>
Diff between esquisse versions 1.0.0 dated 2021-04-12 and 1.0.1 dated 2021-04-20
DESCRIPTION | 10 +++++----- MD5 | 14 +++++++------- NAMESPACE | 2 ++ NEWS.md | 8 ++++++++ R/esquisse-server.R | 14 +++++++------- R/esquisser.R | 3 +-- R/ggcall.R | 7 ++++++- R/module-controls.R | 33 ++++++++++++++++++++++----------- 8 files changed, 58 insertions(+), 33 deletions(-)
Title: Emoji and Font Awesome in Graphics
Description: An implementation of using emoji and fontawesome for using in both
base and 'ggplot2' graphics.
Author: Guangchuang Yu [aut, cre] (<https://orcid.org/0000-0002-6485-8781>),
Claus Thorn Ekstrøm [ctb]
Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>
Diff between emojifont versions 0.5.3 dated 2019-12-12 and 0.5.5 dated 2021-04-20
emojifont-0.5.3/emojifont/README.md |only emojifont-0.5.5/emojifont/DESCRIPTION | 12 - emojifont-0.5.5/emojifont/MD5 | 13 - emojifont-0.5.5/emojifont/NEWS.md | 4 emojifont-0.5.5/emojifont/build/vignette.rds |binary emojifont-0.5.5/emojifont/inst/doc/emojifont.Rmd | 10 - emojifont-0.5.5/emojifont/inst/doc/emojifont.html | 148 +++++++++++----------- emojifont-0.5.5/emojifont/vignettes/emojifont.Rmd | 10 - 8 files changed, 98 insertions(+), 99 deletions(-)
Title: Dive Analysis and Calibration
Description: Utilities to represent, visualize, filter, analyse, and summarize
time-depth recorder (TDR) data. Miscellaneous functions for
handling location data are also provided.
Author: Sebastian P. Luque <spluque@gmail.com>
Maintainer: Sebastian P. Luque <spluque@gmail.com>
Diff between diveMove versions 1.5.3 dated 2021-02-26 and 1.5.4 dated 2021-04-20
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS | 5 +++++ R/speedStats.R | 2 +- inst/doc/diveMove.html | 4 ++-- 5 files changed, 15 insertions(+), 10 deletions(-)
Title: Modules to Import and Manipulate Data in 'Shiny'
Description: 'Shiny' modules to import data into an application or 'addin'
from various sources, and to manipulate them after that.
Author: Victor Perrier [aut, cre, cph],
Fanny Meyer [aut],
Zauad Shahreer Abeer [aut]
Maintainer: Victor Perrier <victor.perrier@dreamrs.fr>
Diff between datamods versions 1.1.3 dated 2021-04-13 and 1.1.4 dated 2021-04-20
DESCRIPTION | 6 MD5 | 10 NEWS.md | 7 R/filter-data.R | 1096 +++++++++++++++++++++++++-------------------------- R/import-globalenv.R | 10 R/utils.R | 15 6 files changed, 591 insertions(+), 553 deletions(-)
Title: Analyses of Circadian Data
Description: Uses non-linear regression to statistically compare two circadian rhythms.
Groups are only compared if both are rhythmic (amplitude is non-zero).
Performs analyses regarding mesor, phase, and amplitude, reporting on estimates and statistical differences, for each, between groups.
Details can be found in Parsons et al (2020) <doi:10.1093/bioinformatics/btz730>.
Author: Rex Parsons [aut, cre] (<https://orcid.org/0000-0002-6053-8174>)
Maintainer: Rex Parsons <Rex.Parsons94@gmail.com>
Diff between circacompare versions 0.1.0 dated 2021-02-08 and 0.1.1 dated 2021-04-20
DESCRIPTION | 8 MD5 | 42 +-- NEWS.md |only R/circa_single.R | 124 ++++++--- R/circa_single_mixed.R | 113 ++++++-- R/circacompare.R | 294 ++++++++--------------- R/circacompare_mixed.R | 390 ++++++++++++------------------- R/make_data.R | 45 +-- R/utils.R |only README.md | 27 ++ inst/doc/circacompare-vignette.R | 84 ++++++ inst/doc/circacompare-vignette.Rmd | 210 +++++++++++++++- inst/doc/circacompare-vignette.html | 349 ++++++++++++++++++++------- man/circa_single.Rd | 8 man/circa_single_mixed.Rd | 139 +++++------ man/circacompare.Rd | 5 man/circacompare_mixed.Rd | 140 ++++++----- man/make_data.Rd | 31 ++ tests/testthat/test-circa_single.R | 61 ++++ tests/testthat/test-circa_single_mixed.R | 24 + tests/testthat/test-circacompare.R | 46 +++ tests/testthat/test-circacompare_mixed.R | 26 +- vignettes/circacompare-vignette.Rmd | 210 +++++++++++++++- 23 files changed, 1554 insertions(+), 822 deletions(-)
Title: Testing Generalized Linear Hypotheses for Generalized Linear
Model Parameters by Profile Deviance
Description: Calculation of signed root deviance profiles for linear combinations of parameters in a generalized linear model. Multiple tests and simultaneous confidence intervals are provided.
Author: Daniel Gerhard [aut, cre]
Maintainer: Daniel Gerhard <00gerhard@gmail.com>
Diff between mcprofile versions 1.0-0 dated 2020-06-04 and 1.0-1 dated 2021-04-20
DESCRIPTION | 10 ++++----- MD5 | 6 ++--- build/vignette.rds |binary inst/doc/mcprofile.html | 52 ++++++++++++++++++++++++------------------------ 4 files changed, 34 insertions(+), 34 deletions(-)
Title: Sample Size Calculations for Longitudinal Data
Description: Compute power and sample size for linear models of longitudinal
data. Supported models include mixed-effects models and models fit by
generalized least squares and generalized estimating equations. Relevant
formulas are derived by Liu and Liang (1997) <DOI:10.2307/2533554>,
Diggle et al (2002) <ISBN:9780199676750>, and Lu, Luo, and Chen (2008)
<DOI:10.2202/1557-4679.1098>.
Author: Michael C. Donohue [aut, cre],
Steve D. Edland [ctb]
Maintainer: Michael C. Donohue <mdonohue@usc.edu>
Diff between longpower versions 1.0-21 dated 2020-04-21 and 1.0.23 dated 2021-04-20
DESCRIPTION | 12 - MD5 | 28 +- R/diggle.linear.power.R | 33 +-- R/edland.linear.power.R | 2 R/liu.liang.linear.power.R | 52 ++--- R/longpower-package.R | 8 build/vignette.rds |binary inst/doc/longpower.R | 36 +-- inst/doc/longpower.Rmd | 62 +++--- inst/doc/longpower.html | 406 +++++++++++++----------------------------- man/diggle.linear.power.Rd | 34 +-- man/edland.linear.power.Rd | 2 man/liu.liang.linear.power.Rd | 52 ++--- man/longpower-package.Rd | 8 vignettes/longpower.Rmd | 62 +++--- 15 files changed, 337 insertions(+), 460 deletions(-)
Title: Dimension Reduction Techniques for Conditional Quantiles
Description: An implementation of dimension reduction techniques
for conditional quantiles. Nonparametric estimation of
conditional quantiles is also available.
Author: Eliana Christou [aut, cre] (<https://orcid.org/0000-0001-5044-0969>)
Maintainer: Eliana Christou <echris15@uncc.edu>
Diff between quantdr versions 1.1.0 dated 2020-12-15 and 1.2.0 dated 2021-04-20
DESCRIPTION | 14 - MD5 | 25 +-- NAMESPACE | 1 NEWS.md | 14 + R/ValAR.R |only R/cqs.R | 10 + R/llqr.R | 9 - R/llqrcv.R | 2 inst/doc/quantdr.R | 84 +++++++++- inst/doc/quantdr.Rmd | 125 ++++++++++++++-- inst/doc/quantdr.html | 343 ++++++++++++++++++++++++++++---------------- man/ValAR.Rd |only tests/testthat/test_ValAR.R |only vignettes/quantdr.Rmd | 125 ++++++++++++++-- vignettes/returns1.png |only vignettes/returns2.png |only 16 files changed, 570 insertions(+), 182 deletions(-)
Title: Language Server Protocol
Description: An implementation of the Language Server Protocol
for R. The Language Server protocol is used by an editor client to
integrate features like auto completion. See
<https://microsoft.github.io/language-server-protocol/> for details.
Author: Randy Lai [aut, cre],
Kun Ren [ctb]
Maintainer: Randy Lai <randy.cs.lai@gmail.com>
Diff between languageserver versions 0.3.9 dated 2020-12-18 and 0.3.10 dated 2021-04-20
DESCRIPTION | 14 +- MD5 | 95 ++++++++------ NEWS.md | 48 +++++++ R/call_hierarchy.R |only R/capabilities.R | 10 + R/completion.R | 81 +++++++++--- R/definition.R | 27 +++- R/document.R | 69 +++++++++- R/formatting.R | 52 ++------ R/handlers-langfeatures.R | 60 +++++++++ R/hover.R | 16 ++ R/languageserver.R | 6 R/link.R | 43 +++++- R/namespace.R | 4 R/selection.R |only R/signature.R | 17 ++ R/symbol.R | 28 ++-- R/utils.R | 57 ++++++++ R/workspace.R | 30 ++++ README.md | 21 +-- man/call_hierarchy_incoming_calls.Rd |only man/call_hierarchy_outgoing_calls.Rd |only man/definition_reply.Rd | 2 man/document_link_reply.Rd | 3 man/sanitize_names.Rd | 2 man/selection_range_reply.Rd |only man/style_text.Rd | 2 man/text_document_linked_editing_range.Rd |only man/text_document_prepare_call_hierarchy.Rd |only src/fsm.c | 92 +++++++++++++- src/fsm.h | 5 src/search.c | 6 tests/testthat/helper-utils.R | 49 +++++++ tests/testthat/test-call-hierarchy.R |only tests/testthat/test-codeunits.R | 2 tests/testthat/test-color.R | 2 tests/testthat/test-completion.R | 179 +++++++++++++++++++++++++++- tests/testthat/test-definition.R | 30 ++++ tests/testthat/test-folding.R | 6 tests/testthat/test-formatting.R | 2 tests/testthat/test-highlight.R | 2 tests/testthat/test-hover.R | 7 - tests/testthat/test-langauagecilent.R | 2 tests/testthat/test-link.R | 74 ++++++++--- tests/testthat/test-lintr.R | 2 tests/testthat/test-null-root.R | 2 tests/testthat/test-references.R | 2 tests/testthat/test-rename.R | 2 tests/testthat/test-search.R | 21 ++- tests/testthat/test-selection.R |only tests/testthat/test-signature.R | 2 tests/testthat/test-stdio.R | 2 tests/testthat/test-symbol.R | 67 +++++++--- 53 files changed, 1001 insertions(+), 244 deletions(-)
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