Title: Bayesian Dynamic Factor Analysis (DFA) with 'Stan'
Description: Implements Bayesian dynamic factor analysis with 'Stan'. Dynamic
factor analysis is a dimension reduction tool for multivariate time series.
'bayesdfa' extends conventional dynamic factor models in several ways.
First, extreme events may be estimated in the latent trend by modeling
process error with a student-t distribution. Second, alternative constraints
(including proportions are allowed). Third, the estimated
dynamic factors can be analyzed with hidden Markov models to evaluate
support for latent regimes.
Author: Eric J. Ward [aut, cre],
Sean C. Anderson [aut],
Luis A. Damiano [aut],
Michael J. Malick [aut],
Mary E. Hunsicker, [ctb],
Mike A. Litzow [ctb],
Mark D. Scheuerell [ctb],
Elizabeth E. Holmes [ctb],
Nick Tolimieri [ctb],
Trustees of Columbia University [cph]
Maintainer: Eric J. Ward <eric.ward@noaa.gov>
Diff between bayesdfa versions 0.1.7 dated 2021-05-04 and 1.0.0 dated 2021-05-18
DESCRIPTION | 6 +- MD5 | 52 ++++++++++----------- NEWS.md | 4 + R/fit_dfa.R | 20 ++++---- R/rotate_trends.R | 14 +++++ R/sim.R | 2 inst/doc/bayesdfa.R | 8 +-- inst/doc/bayesdfa.Rmd | 8 +-- inst/doc/bayesdfa.html | 57 +++++++++++++---------- inst/doc/combining_data.R | 2 inst/doc/combining_data.Rmd | 2 inst/doc/combining_data.html | 23 ++++++--- inst/doc/compositional.R | 4 - inst/doc/compositional.Rmd | 4 - inst/doc/compositional.html | 21 +++++--- inst/doc/covariates.html | 17 ++++--- inst/doc/estimate_process_sigma.R | 10 ++-- inst/doc/estimate_process_sigma.Rmd | 10 ++-- inst/doc/estimate_process_sigma.html | 85 ++++++++++++++++++----------------- inst/stan/dfa.stan | 2 man/fit_dfa.Rd | 6 +- src/stanExports_dfa.h | 8 +-- tests/testthat/test-fit.R | 7 +- vignettes/bayesdfa.Rmd | 8 +-- vignettes/combining_data.Rmd | 2 vignettes/compositional.Rmd | 4 - vignettes/estimate_process_sigma.Rmd | 10 ++-- 27 files changed, 225 insertions(+), 171 deletions(-)
Title: Robust Data-Driven Statistical Inference in
Regression-Discontinuity Designs
Description: Regression-discontinuity (RD) designs are quasi-experimental research designs popular in social, behavioral and natural sciences. The RD design is usually employed to study the (local) causal effect of a treatment, intervention or policy. This package provides tools for data-driven graphical and analytical statistical inference in RD designs: rdrobust() to construct local-polynomial point estimators and robust confidence intervals for average treatment effects at the cutoff in Sharp, Fuzzy and Kink RD settings, rdbwselect() to perform bandwidth selection for the different procedures implemented, and rdplot() to conduct exploratory data analysis (RD plots).
Author: Sebastian Calonico <sebastian.calonico@columbia.edu>, Matias D. Cattaneo <cattaneo@princeton.edu>, Max H. Farrell <max.farrell@chicagobooth.edu>, Rocio Titiunik <titiunik@princeton.edu>
Maintainer: Sebastian Calonico <sebastian.calonico@columbia.edu>
Diff between rdrobust versions 1.0.1 dated 2021-02-24 and 1.0.2 dated 2021-05-18
DESCRIPTION | 8 +++---- MD5 | 8 +++---- R/rdplot.R | 52 ++++++++++++++++++++++++++++++++++++++---------- R/rdrobust.R | 2 - man/rdrobust-package.Rd | 4 +-- 5 files changed, 53 insertions(+), 21 deletions(-)
Title: R Interface to 'Quarto' Markdown Publishing System
Description: Convert R Markdown documents and 'Jupyter' notebooks to a variety of
output formats using 'Quarto'.
Author: JJ Allaire [aut, cre] (<https://orcid.org/0000-0003-0174-9868>)
Maintainer: JJ Allaire <jj@rstudio.com>
Diff between quarto versions 0.1 dated 2021-02-09 and 0.3 dated 2021-05-18
quarto-0.1/quarto/tests/testthat/project/_quarto |only quarto-0.3/quarto/DESCRIPTION | 11 quarto-0.3/quarto/MD5 | 36 +- quarto-0.3/quarto/NAMESPACE | 8 quarto-0.3/quarto/R/metadata.R | 2 quarto-0.3/quarto/R/publish.R |only quarto-0.3/quarto/R/quarto-package.R |only quarto-0.3/quarto/R/render.R | 16 - quarto-0.3/quarto/R/serve.R |only quarto-0.3/quarto/README.md | 2 quarto-0.3/quarto/man/quarto.Rd |only quarto-0.3/quarto/man/quarto_metadata.Rd | 2 quarto-0.3/quarto/man/quarto_publish.Rd |only quarto-0.3/quarto/man/quarto_render.Rd | 5 quarto-0.3/quarto/man/quarto_serve.Rd |only quarto-0.3/quarto/tests/testthat/project/_quarto.yml |only quarto-0.3/quarto/tests/testthat/project/project.html |only quarto-0.3/quarto/tests/testthat/project/project_files |only quarto-0.3/quarto/tests/testthat/test.html | 234 ++++------------- 19 files changed, 120 insertions(+), 196 deletions(-)
Title: Plot Brackets
Description: Adds different kinds of brackets to a plot, including braces, chevrons, parentheses or square brackets.
Author: Andreas Schulz
Maintainer: Andreas Schulz <ades-s@web.de>
Diff between pBrackets versions 1.0 dated 2014-10-17 and 1.0.1 dated 2021-05-18
pBrackets-1.0.1/pBrackets/DESCRIPTION | 16 ++--- pBrackets-1.0.1/pBrackets/MD5 | 22 +++---- pBrackets-1.0.1/pBrackets/NAMESPACE | 2 pBrackets-1.0.1/pBrackets/build/vignette.rds |binary pBrackets-1.0.1/pBrackets/inst/doc/pBrackets_vignette.R | 31 +--------- pBrackets-1.0.1/pBrackets/inst/doc/pBrackets_vignette.Rmd |only pBrackets-1.0.1/pBrackets/inst/doc/pBrackets_vignette.html |only pBrackets-1.0.1/pBrackets/man/brackets.Rd | 4 - pBrackets-1.0.1/pBrackets/man/grid.brackets.Rd | 2 pBrackets-1.0.1/pBrackets/man/pBrackets-package.Rd | 4 - pBrackets-1.0.1/pBrackets/vignettes/pBrackets_vignette.Rmd |only pBrackets-1.0/pBrackets/inst/doc/pBrackets_vignette.pdf |only pBrackets-1.0/pBrackets/inst/doc/pBrackets_vignette.rnw |only pBrackets-1.0/pBrackets/vignettes/pBrackets_vignette-plot1.png |only pBrackets-1.0/pBrackets/vignettes/pBrackets_vignette-plot2.png |only pBrackets-1.0/pBrackets/vignettes/pBrackets_vignette.rnw |only 16 files changed, 31 insertions(+), 50 deletions(-)
Title: Mixed Computerized Adaptive Multistage Testing
Description: Provides functions to more easily analyze computerized adaptive tests. Currently, functions for computerized
adaptive tests (CAT), computer adaptive multistage tests (CMT), and mixed computer adaptive multistage tests (McaMST)
utilizing CAT item-level adaptation for the initial stage and traditional MST module-level adaptation for the subsequent
stages have been created, and a variation of Hybrid computer adaptive MST is planned as well. For an in-depth look at
CAT and MST, see Weiss & Kingsbury (1984) <doi:10.1111/j.1745-3984.1984.tb01040.x> and Luecht & Nungester
(2000) <doi:10.1007/0-306-47531-6_6> respectively.
Author: Anthony Raborn [aut, cre]
Maintainer: Anthony Raborn <anthony.w.raborn@gmail.com>
Diff between caMST versions 0.1.3 dated 2019-12-05 and 0.1.4 dated 2021-05-18
DESCRIPTION | 10 MD5 | 34 +- NEWS.md | 6 R/mst_and_transition_matrices_for_caMST.R | 442 +++++++++++++++++++++++++++--- man/CAT-class.Rd | 64 ++-- man/MST-class.Rd | 80 ++--- man/caMST.Rd | 1 man/cat_items.Rd | 6 man/computerized_adaptive_test.Rd | 21 - man/example_module_items.Rd | 4 man/example_responses.Rd | 4 man/example_thetas.Rd | 4 man/example_transition_matrix.Rd | 4 man/mixed_adaptive_test.Rd | 20 + man/mst_items.Rd | 6 man/mst_only_items.Rd | 6 man/mst_only_matrix.Rd | 4 man/multistage_test.Rd | 15 - 18 files changed, 575 insertions(+), 156 deletions(-)
Title: Measurement Model of Derivatives in 'OpenMx'
Description: Provides a convenient interface in 'OpenMx' for building
Estabrook's (2015) <doi:10.1037/a0034523> Measurement Model of
Derivatives (MMOD).
Author: Kyle D. Husmann [aut, cre],
Timothy R. Brick [aut],
Ryne Estabrook [aut]
Maintainer: Kyle D. Husmann <kdh38@psu.edu>
Diff between mxmmod versions 1.0.1 dated 2020-03-28 and 1.1.0 dated 2021-05-18
DESCRIPTION | 8 MD5 | 20 - NEWS.md |only R/mxMmodModel.R | 53 ++ build/vignette.rds |binary inst/doc/mmod_tutorial.R | 20 - inst/doc/mmod_tutorial.html | 757 +++++++++++++++++----------------------- man/mxMmodModel.Rd | 16 man/nlsy97depression.Rd | 6 man/time_delay_embed.Rd |only tests/testthat/test-refimpl.R | 19 - tests/testthat/test-timedelay.R |only tests/testthat/test-twofactor.R |only 13 files changed, 438 insertions(+), 461 deletions(-)
Title: Extra Methods for Sparse Matrices
Description: Extends sparse matrix and vector classes from the 'Matrix' package by providing:
(a) Methods and operators that work natively on CSR formats (compressed sparse row,
a.k.a. 'RsparseMatrix') such as slicing/sub-setting, assignment, rbind(),
mathematical operators for CSR and COO such as addition ("+") or sqrt(), and methods such as diag();
(b) Multi-threaded matrix multiplication and cross-product for many <sparse, dense> types,
including the 'float32' type from 'float';
(c) Coercion methods between pairs of classes which are not present in 'Matrix',
such as 'dgCMatrix' -> 'ngRMatrix', as well as convenience conversion functions;
(d) Utility functions for sparse matrices such as sorting the indices or removing
zero-valued entries;
(e) Fast transposes that work by outputting in the opposite storage format;
(f) Faster replacements for many 'Matrix' methods for all sparse types, such as
slicing and elementwise multiplication.
Author: David Cortes [aut, cre, cph],
Dmitry Selivanov [cph]
Maintainer: David Cortes <david.cortes.rivera@gmail.com>
Diff between MatrixExtra versions 0.1.2 dated 2021-05-13 and 0.1.4 dated 2021-05-18
MatrixExtra-0.1.2/MatrixExtra/src/Makevars.win |only MatrixExtra-0.1.4/MatrixExtra/DESCRIPTION | 10 MatrixExtra-0.1.4/MatrixExtra/MD5 | 29 MatrixExtra-0.1.4/MatrixExtra/build |only MatrixExtra-0.1.4/MatrixExtra/configure | 911 ------------- MatrixExtra-0.1.4/MatrixExtra/configure.ac | 24 MatrixExtra-0.1.4/MatrixExtra/configure.win |only MatrixExtra-0.1.4/MatrixExtra/src/Makevars.in | 3 MatrixExtra-0.1.4/MatrixExtra/src/Makevars.win.in |only MatrixExtra-0.1.4/MatrixExtra/src/assignment.cpp | 25 MatrixExtra-0.1.4/MatrixExtra/src/matmul.cpp | 23 MatrixExtra-0.1.4/MatrixExtra/src/operators.cpp | 350 ++++ MatrixExtra-0.1.4/MatrixExtra/src/rbind.cpp | 25 MatrixExtra-0.1.4/MatrixExtra/src/slice.cpp | 15 MatrixExtra-0.1.4/MatrixExtra/src/slice_coo.cpp | 16 MatrixExtra-0.1.4/MatrixExtra/tests/testthat/test-matmul.R | 10 MatrixExtra-0.1.4/MatrixExtra/vignettes |only 17 files changed, 448 insertions(+), 993 deletions(-)
Title: Open Source Geometry Engine ('GEOS') R API
Description: Provides an R API to the Open Source Geometry Engine
('GEOS') library (<https://trac.osgeo.org/geos/>) and a vector format
with which to efficiently store 'GEOS' geometries. High-performance functions
to extract information from, calculate relationships between, and
transform geometries are provided. Finally, facilities to import
and export geometry vectors to other spatial formats are provided.
Author: Dewey Dunnington [aut, cre] (<https://orcid.org/0000-0002-9415-4582>),
Edzer Pebesma [aut] (<https://orcid.org/0000-0001-8049-7069>)
Maintainer: Dewey Dunnington <dewey@fishandwhistle.net>
Diff between geos versions 0.1.0 dated 2021-05-03 and 0.1.1 dated 2021-05-18
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- NEWS.md | 5 +++++ README.md | 2 +- src/geos-strtree.c | 3 +++ tests/testthat/Rplots.pdf |binary 6 files changed, 17 insertions(+), 9 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-02-25 0.99.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-05-18 1.0.0
Title: Linear and Nonlinear Methods for Analyzing Daily and Monthly
Dendroclimatological Data
Description: Provides novel dendroclimatological methods, primarily used by the
Tree-ring research community. There are four core functions. The first one is
daily_response(), which finds the optimal sequence of days that are related
to one or more tree-ring proxy records. Similar function is daily_response_seascorr(),
which implements partial correlations in the analysis of daily response functions.
For the enthusiast of monthly data, there is monthly_response() function.
The last core function is compare_methods(), which effectively compares several
linear and nonlinear regression algorithms on the task of climate reconstruction.
Author: Jernej Jevsenak [aut, cre]
Maintainer: Jernej Jevsenak <jernej.jevsenak@gmail.com>
Diff between dendroTools versions 1.1.3 dated 2021-03-16 and 1.1.4 dated 2021-05-18
DESCRIPTION | 6 MD5 | 24 - NEWS.md | 4 R/daily_response.R | 257 +++++++++++++++++++- R/daily_response_seascorr.R | 107 ++++++++ R/data_transform.R | 3 R/monthly_response.R | 261 +++++++++++++++++++-- R/monthly_response_seascorr.R | 89 ++++++- inst/doc/Compare_different_regression_methods.html | 4 inst/doc/Examples_with_daily_climate_data.R | 2 inst/doc/Examples_with_daily_climate_data.Rmd | 2 inst/doc/Examples_with_daily_climate_data.html | 6 vignettes/Examples_with_daily_climate_data.Rmd | 2 13 files changed, 694 insertions(+), 73 deletions(-)
Title: Custom 'Bootstrap' 'Sass' Themes for 'shiny' and 'rmarkdown'
Description: Simplifies custom 'CSS' styling of both 'shiny' and 'rmarkdown' via 'Bootstrap' 'Sass'. Supports both 'Bootstrap' 3 and 4 as well as their various 'Bootswatch' themes. An interactive widget is also provided for previewing themes in real time.
Author: Carson Sievert [aut, cre] (<https://orcid.org/0000-0002-4958-2844>),
Joe Cheng [aut],
RStudio [cph],
Bootstrap contributors [ctb] (Bootstrap library),
Twitter, Inc [cph] (Bootstrap library),
Javi Aguilar [ctb, cph] (Bootstrap colorpicker library),
Thomas Park [ctb, cph] (Bootswatch library),
PayPal [ctb, cph] (Bootstrap accessibility plugin)
Maintainer: Carson Sievert <carson@rstudio.com>
Diff between bslib versions 0.2.5 dated 2021-05-12 and 0.2.5.1 dated 2021-05-18
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- NEWS.md | 4 ++++ tests/testthat/test-rmd-skeletons.R | 4 ++++ 4 files changed, 15 insertions(+), 7 deletions(-)
Title: Full Corpus Support for the 'koRpus' Package
Description: Enhances 'koRpus' text object classes and methods to also support large
corpora. Hierarchical ordering of corpus texts into arbitrary categories will
be preserved. Provided classes and methods also improve the ability of using
the 'koRpus' package together with the 'tm' package. To ask for help, report
bugs, suggest feature improvements, or discuss the global development of the
package, please subscribe to the koRpus-dev mailing list
(<https://korpusml.reaktanz.de>).
Author: m.eik michalke [aut, cre]
Maintainer: m.eik michalke <meik.michalke@hhu.de>
Diff between tm.plugin.koRpus versions 0.4-1 dated 2020-12-29 and 0.4-2 dated 2021-05-18
ChangeLog | 8 ++ DESCRIPTION | 12 +-- MD5 | 26 +++---- R/01_class_01_kRp.corpus.R | 24 ++++++- R/tm.plugin.koRpus-package.R | 4 - build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 8 +- inst/NEWS.Rd | 14 ++++ inst/doc/tm.plugin.koRpus_vignette.html | 69 +++++++-------------- man/tm.plugin.koRpus-package.Rd | 4 - tests/testthat/sampleCorpusHier2Txt4_from_df.RData |binary tests/testthat/sampleCorpus_from_df_min.RData |binary tests/testthat/tests.R | 2 14 files changed, 96 insertions(+), 75 deletions(-)
More information about tm.plugin.koRpus at CRAN
Permanent link
Title: Bindings for Bayesian TidyModels
Description: Fit Bayesian models using 'brms'/'Stan' with 'parsnip'/'tidymodels'
via 'bayesian' <doi:10.5281/zenodo.4430991>. 'tidymodels' is a collection of
packages for machine learning; see Wickham (2020) <https://www.tidymodels.org>).
The technical details of 'brms' and 'Stan' are described in Bürkner (2017)
<doi:10.18637/jss.v080.i01>, Bürkner (2018) <doi:10.32614/RJ-2018-017>,
and Carpenter et al. (2017) <doi:10.18637/jss.v076.i01>.
Author: Hamada S. Badr [aut, cre] (<https://orcid.org/0000-0002-9808-2344>),
Paul-Christian Bürkner [aut]
Maintainer: Hamada S. Badr <badr@jhu.edu>
Diff between bayesian versions 0.0.3 dated 2021-04-02 and 0.0.4 dated 2021-05-18
DESCRIPTION | 16 - MD5 | 26 +-- NEWS.md | 18 ++ R/bayesian.R | 222 ++++++++------------------ R/bayesian_make.R | 397 ++++++++++++++++++++++++++++++++++++----------- README.md | 2 build/vignette.rds |binary inst/WORDLIST | 3 inst/doc/BugReports.Rmd | 17 +- inst/doc/BugReports.html | 17 +- inst/doc/GetStarted.R |only inst/doc/GetStarted.Rmd |only inst/doc/GetStarted.html |only man/bayesian.Rd | 248 +++++++++++++++-------------- vignettes/BugReports.Rmd | 17 +- vignettes/GetStarted.Rmd |only 16 files changed, 593 insertions(+), 390 deletions(-)
Title: Smooth and Tidy Spatial Features
Description: Tools for smoothing and tidying spatial features
(i.e. lines and polygons) to make them more aesthetically pleasing.
Smooth curves, fill holes, and remove small fragments from lines and
polygons.
Author: Matthew Strimas-Mackey [aut, cre]
(<https://orcid.org/0000-0001-8929-7776>)
Maintainer: Matthew Strimas-Mackey <mstrimas@gmail.com>
Diff between smoothr versions 0.1.2 dated 2020-01-23 and 0.2.0 dated 2021-05-18
smoothr-0.1.2/smoothr/R/data.r |only smoothr-0.1.2/smoothr/R/densify.r |only smoothr-0.1.2/smoothr/R/drop-crumbs.r |only smoothr-0.1.2/smoothr/R/fill-holes.r |only smoothr-0.1.2/smoothr/R/smooth-chaikin.r |only smoothr-0.1.2/smoothr/R/smooth-densify.r |only smoothr-0.1.2/smoothr/R/smooth-ksmooth.r |only smoothr-0.1.2/smoothr/R/smooth-spline.r |only smoothr-0.1.2/smoothr/R/smooth.r |only smoothr-0.1.2/smoothr/R/utils.r |only smoothr-0.1.2/smoothr/tests/testthat/test_drop-crumbs.r |only smoothr-0.1.2/smoothr/tests/testthat/test_fill-holes.r |only smoothr-0.1.2/smoothr/tests/testthat/test_smooth-chaikin.r |only smoothr-0.1.2/smoothr/tests/testthat/test_smooth-densify.r |only smoothr-0.1.2/smoothr/tests/testthat/test_smooth-ksmooth.r |only smoothr-0.1.2/smoothr/tests/testthat/test_smooth-spline.r |only smoothr-0.1.2/smoothr/tests/testthat/test_smooth.r |only smoothr-0.2.0/smoothr/DESCRIPTION | 28 - smoothr-0.2.0/smoothr/MD5 | 83 +-- smoothr-0.2.0/smoothr/NAMESPACE | 3 smoothr-0.2.0/smoothr/NEWS.md | 7 smoothr-0.2.0/smoothr/R/data.R |only smoothr-0.2.0/smoothr/R/densify.R |only smoothr-0.2.0/smoothr/R/drop-crumbs.R |only smoothr-0.2.0/smoothr/R/fill-holes.R |only smoothr-0.2.0/smoothr/R/smooth-chaikin.R |only smoothr-0.2.0/smoothr/R/smooth-densify.R |only smoothr-0.2.0/smoothr/R/smooth-ksmooth.R |only smoothr-0.2.0/smoothr/R/smooth-spline.R |only smoothr-0.2.0/smoothr/R/smooth.R |only smoothr-0.2.0/smoothr/R/utils.R |only smoothr-0.2.0/smoothr/build/vignette.rds |binary smoothr-0.2.0/smoothr/data/jagged_lines.rda |binary smoothr-0.2.0/smoothr/data/jagged_lines_3d.rda |only smoothr-0.2.0/smoothr/data/jagged_polygons.rda |binary smoothr-0.2.0/smoothr/data/jagged_raster.rda |binary smoothr-0.2.0/smoothr/inst/doc/smoothr.R | 3 smoothr-0.2.0/smoothr/inst/doc/smoothr.Rmd | 5 smoothr-0.2.0/smoothr/inst/doc/smoothr.html | 357 ++++++------- smoothr-0.2.0/smoothr/man/densify.Rd | 6 smoothr-0.2.0/smoothr/man/drop_crumbs.Rd | 8 smoothr-0.2.0/smoothr/man/figures |only smoothr-0.2.0/smoothr/man/fill_holes.Rd | 9 smoothr-0.2.0/smoothr/man/jagged_lines.Rd | 8 smoothr-0.2.0/smoothr/man/jagged_lines_3d.Rd |only smoothr-0.2.0/smoothr/man/jagged_polygons.Rd | 8 smoothr-0.2.0/smoothr/man/jagged_raster.Rd | 6 smoothr-0.2.0/smoothr/man/smooth.Rd | 8 smoothr-0.2.0/smoothr/man/smooth_chaikin.Rd | 2 smoothr-0.2.0/smoothr/man/smooth_densify.Rd | 4 smoothr-0.2.0/smoothr/man/smooth_ksmooth.Rd | 2 smoothr-0.2.0/smoothr/man/smooth_spline.Rd | 12 smoothr-0.2.0/smoothr/tests/testthat/test_drop-crumbs.R |only smoothr-0.2.0/smoothr/tests/testthat/test_fill-holes.R |only smoothr-0.2.0/smoothr/tests/testthat/test_smooth-chaikin.R |only smoothr-0.2.0/smoothr/tests/testthat/test_smooth-densify.R |only smoothr-0.2.0/smoothr/tests/testthat/test_smooth-ksmooth.R |only smoothr-0.2.0/smoothr/tests/testthat/test_smooth-spline.R |only smoothr-0.2.0/smoothr/tests/testthat/test_smooth.R |only smoothr-0.2.0/smoothr/vignettes/smoothr.Rmd | 5 60 files changed, 311 insertions(+), 253 deletions(-)
Title: Repeatable Analysis in R
Description: Set of utilities to facilitate the reproduction of analysis in R.
It allow to make_structure(), clean_structure(), and run and log programs in a
predefined order to allow secondary files, analysis and reports be constructed in
an ordered form.
Author: John J. Aponte [aut, cre] (<https://orcid.org/0000-0002-3014-3673>)
Maintainer: John J. Aponte <john.j.aponte@gmail.com>
Diff between repana versions 1.23.0 dated 2021-05-17 and 1.23.1 dated 2021-05-18
DESCRIPTION | 8 ++-- MD5 | 14 +++---- NAMESPACE | 1 NEWS.md | 3 + R/render_report.R | 2 + inst/doc/using_repana.html | 4 +- tests/testthat/test_master_spin.R | 70 ++++++++++++++++++++++-------------- tests/testthat/test_render_report.R | 38 +++++++++++-------- 8 files changed, 84 insertions(+), 56 deletions(-)
Title: Multiplicative Interaction Models Diagnostics and Visualization
Description: Performs diagnostic tests of multiplicative interaction models and plots non-linear marginal effects of a treatment on an outcome across different values of a moderator.
Author: Jens Hainmueller [aut, ctb],
Jonathan Mummolo [aut, ctb],
Yiqing Xu [aut, ctb],
Ziyi Liu [aut, cre]
Maintainer: Ziyi Liu <zyliu2020@uchicago.edu>
Diff between interflex versions 1.2.5 dated 2021-05-06 and 1.2.6 dated 2021-05-18
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/binning.R | 2 ++ README.md | 4 ++-- 4 files changed, 10 insertions(+), 8 deletions(-)
Title: Advanced Tables for Markdown/HTML
Description: Tables with state-of-the-art layout elements such as row spanners,
column spanners, table spanners, zebra striping, and more. While allowing
advanced layout, the underlying css-structure is simple in order to maximize
compatibility with word processors such as 'MS Word' or 'LibreOffice'. The package
also contains a few text formatting functions that help outputting text
compatible with HTML/LaTeX.
Author: Max Gordon [aut, cre],
Stephen Gragg [aut],
Peter Konings [aut]
Maintainer: Max Gordon <max@gforge.se>
Diff between htmlTable versions 2.1.0 dated 2020-09-16 and 2.2.1 dated 2021-05-18
DESCRIPTION | 6 MD5 | 24 + NEWS.md | 8 R/tidyHtmlTable.R | 5 R/txtFrmt.R | 11 build/vignette.rds |binary inst/doc/complex_tables.html | 23 + inst/doc/general.html | 23 + inst/doc/tidyHtmlTable.html | 23 + man/txtInt.Rd | 9 tests/testthat/test-tidyHtmlTable.R | 298 ------------------------ tests/testthat/test-tidyHtmlTable_Hmisc_latex.R |only tests/testthat/test-tidyHtmlTable_sorting.R |only tests/testthat/test-txtFrmt.R | 16 - 14 files changed, 111 insertions(+), 335 deletions(-)
Title: Download and Visualize Essential Climate Change Data
Description: Provides easy access to essential climate change datasets to non-climate experts. Users can download the latest raw data from authoritative sources and view it via pre-defined 'ggplot2' charts. Datasets include atmospheric CO2, instrumental and proxy temperature records, sea levels, Arctic/Antarctic sea-ice, Hurricanes, and Paleoclimate data. Sources include: NOAA Mauna Loa Laboratory <https://gml.noaa.gov/ccgg/trends/data.html>, NASA GISTEMP <https://data.giss.nasa.gov/gistemp/>, National Snow and Sea Ice Data Center <https://nsidc.org/data/seaice_index/archives>, CSIRO <https://research.csiro.au/slrwavescoast/sea-level/measurements-and-data/sea-level-data/>, NOAA Laboratory for Satellite Altimetry <https://www.star.nesdis.noaa.gov/socd/lsa/SeaLevelRise/> and HURDAT Atlantic Hurricane Database <https://www.aoml.noaa.gov/hrd/hurdat/Data_Storm.html>, Vostok Paleo carbon dioxide and temperature data: <https://cdiac.ess-dive.lbl.gov/trends/co2/vostok.html>.
Author: Hernando Cortina [aut, cre] (<https://orcid.org/0000-0001-6790-4870>)
Maintainer: Hernando Cortina <hch@alum.mit.edu>
Diff between hockeystick versions 0.5.0 dated 2021-04-14 and 0.5.1 dated 2021-05-18
DESCRIPTION | 11 - MD5 | 75 ++++---- NAMESPACE | 96 +++++----- NEWS.md | 58 +++--- R/2kyears_temp.R | 250 ++++++++++++++-------------- R/carbon.R | 8 R/data_cache.R | 6 R/globalvars.R | 6 R/hurricanes.R | 324 ++++++++++++++++++------------------- R/icecurves.R | 2 R/instrumental_temp.R | 236 +++++++++++++------------- R/isconnecting.R |only R/paleo.R | 260 ++++++++++++++--------------- R/seaice.R | 2 R/sealevel.R | 2 R/zzz.R | 8 README.md | 8 build/partial.rdb |binary inst/WORDLIST | 11 - man/figures/README-carbon-1.png |binary man/figures/README-grid-1.png |binary man/figures/README-icecurves-1.png |binary man/figures/README-si-1.png |binary man/figures/README-stripes-1.png |binary man/figures/README-stripes2-1.png |binary man/figures/README-temp-1.png |binary man/get_carbon.Rd | 4 man/get_hurricanes.Rd | 104 +++++------ man/get_icecurves.Rd | 124 +++++++------- man/get_paleo.Rd | 102 +++++------ man/get_seaice.Rd | 130 +++++++------- man/get_temp.Rd | 110 ++++++------ man/get_temp2k.Rd | 104 +++++------ man/hockeystick-package.Rd | 2 man/hockeystick_cache.Rd | 170 +++++++++---------- man/plot_hurricane_nrg.Rd | 86 ++++----- man/plot_hurricanes.Rd | 82 ++++----- man/plot_temp.Rd | 82 ++++----- man/plot_temp2k.Rd | 100 +++++------ 39 files changed, 1282 insertions(+), 1281 deletions(-)
Title: Generalized Linear Models for Categorical Responses
Description: In statistical modeling, there is a wide variety of regression models for categorical dependent variables (nominal or ordinal data); yet, there is no software embracing all these models together in a uniform and generalized format. Following the methodology proposed by Peyhardi, Trottier, and Guédon (2015) <doi:10.1093/biomet/asv042>, we introduce 'GLMcat', an R package to estimate generalized linear models implemented under the unified specification (r, F, Z). Where r represents the ratio of probabilities (reference, cumulative, adjacent, or sequential), F the cumulative cdf function for the linkage, and Z, the design matrix.
Author: Lorena León [aut, cre],
Jean Peyhardi [aut],
Catherine Trottier [aut]
Maintainer: Lorena León <ylorenaleonv@gmail.com>
Diff between GLMcat versions 0.2.2 dated 2021-05-09 and 0.2.3 dated 2021-05-18
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- NAMESPACE | 1 - R/GLMcatMethods.R | 3 ++- R/zzz.R | 1 - inst/doc/Discrete_CM_examples.pdf |binary inst/doc/GLMcat_tutorial.pdf |binary src/DiscreteCM.cpp | 8 +++++++- src/cdf.cpp | 10 +++++++++- 9 files changed, 30 insertions(+), 17 deletions(-)
Title: Properties of Bayesian Early Gating Designs
Description: Computes the most important properties of four 'Bayesian' early gating
designs (two single arm and two randomized controlled designs), such
as minimum required number of successes in the experimental group to
make a GO decision, operating characteristics and average operating
characteristics with respect to the sample size.
These might aid in deciding what design to use for the early phase trial.
Author: Elias Laurin Meyer [aut, cre]
Maintainer: Elias Laurin Meyer <elias.meyer@meduniwien.ac.at>
Diff between earlygating versions 1.0 dated 2018-08-30 and 1.1 dated 2021-05-18
earlygating-1.0/earlygating/man/avg_oc_wr_ne.rd |only earlygating-1.0/earlygating/man/avg_oc_wr_ne_rct.rd |only earlygating-1.0/earlygating/man/avg_oc_wr_ph.rd |only earlygating-1.0/earlygating/man/beta_par.rd |only earlygating-1.0/earlygating/man/oc.rd |only earlygating-1.0/earlygating/man/oc_rct.rd |only earlygating-1.0/earlygating/man/req_resp.rd |only earlygating-1.0/earlygating/man/req_resp_rct.rd |only earlygating-1.1/earlygating/DESCRIPTION | 8 earlygating-1.1/earlygating/MD5 | 37 - earlygating-1.1/earlygating/NAMESPACE | 6 earlygating-1.1/earlygating/R/avg_oc_wr_ne.r | 645 ++++++++++-------- earlygating-1.1/earlygating/R/avg_oc_wr_ne_rct.r | 689 +++++++++++--------- earlygating-1.1/earlygating/R/avg_oc_wr_ph.r | 315 +++++---- earlygating-1.1/earlygating/R/beta_par.r | 151 +++- earlygating-1.1/earlygating/R/oc.r | 243 ++++--- earlygating-1.1/earlygating/R/oc_rct.r | 246 ++++--- earlygating-1.1/earlygating/R/req_resp.r | 61 + earlygating-1.1/earlygating/R/req_resp_rct.r | 256 ++++--- earlygating-1.1/earlygating/README.md |only earlygating-1.1/earlygating/man/avg_oc_wr_ne.Rd |only earlygating-1.1/earlygating/man/avg_oc_wr_ne_rct.Rd |only earlygating-1.1/earlygating/man/avg_oc_wr_ph.Rd |only earlygating-1.1/earlygating/man/beta_par.Rd |only earlygating-1.1/earlygating/man/oc.Rd |only earlygating-1.1/earlygating/man/oc_rct.Rd |only earlygating-1.1/earlygating/man/req_resp.Rd |only earlygating-1.1/earlygating/man/req_resp_rct.Rd |only 28 files changed, 1598 insertions(+), 1059 deletions(-)
Title: Disaster Victim Identification
Description: Joint DNA-based disaster victim identification (DVI), as described in
Vigeland and Egeland (2021) <doi:10.21203/rs.3.rs-296414/v1>. Identification is
performed by optimising the joint likelihood of all victim samples and
reference individuals. Individual identification probabilities, conditional on
all available information, are derived from the joint solution in the form of
posterior pairing probabilities. 'dvir' is part of the 'ped suite' collection
of packages for pedigree analysis. In particular it uses 'forrel' for
calculation of likelihood ratios.
Author: Thore Egeland [aut, cre] (<https://orcid.org/0000-0002-3465-8885>),
Magnus Dehli Vigeland [aut] (<https://orcid.org/0000-0002-9134-4962>)
Maintainer: Thore Egeland <thore.egeland@nmbu.no>
Diff between dvir versions 2.0.0 dated 2021-03-29 and 2.1.0 dated 2021-05-18
DESCRIPTION | 24 +-- MD5 | 18 +- R/data.R | 86 ++++++++---- README.md | 279 ++++++++++++++++++++++++++++----------- man/example1.Rd | 8 - man/example2.Rd | 2 man/figures/README-example-1.png |binary man/grave.Rd | 2 man/icmp.Rd | 39 +++-- man/planecrash.Rd | 30 +++- 10 files changed, 351 insertions(+), 137 deletions(-)
Title: Dirichlet Regression
Description: Implements Dirichlet regression models.
Author: Marco Johannes Maier [cre, aut]
(<https://orcid.org/0000-0002-1715-7456>)
Maintainer: Marco Johannes Maier <marco_maier@posteo.de>
Diff between DirichletReg versions 0.7-0 dated 2020-05-29 and 0.7-1 dated 2021-05-18
DESCRIPTION | 18 MD5 | 36 - NEWS | 11 R/anova.DirichletRegModel.R | 2 R/summary.DirichletRegModel.R | 3 R/sysdata.rda |binary build/partial.rdb |binary build/vignette.rds |binary data/ArcticLake.RData |binary data/BloodSamples.RData |binary data/GlacialTills.RData |binary data/ReadingSkills.RData |binary data/Rocks.RData |binary inst/CITATION | 22 inst/NEWS.Rd | 8 inst/NEWS.pdf |binary inst/doc/DirichletReg-vig.Rmd | 2 inst/doc/DirichletReg-vig.html | 1007 +++++++++++++++++++++-------------------- vignettes/DirichletReg-vig.Rmd | 2 19 files changed, 584 insertions(+), 527 deletions(-)
Title: 'systemPipeShiny' UI and Server Components
Description: The systemPipeShiny (SPS) framework comes with many UI and server components. However, installing the whole framework is heavy and takes some time. If you would like to use UI and server components from SPS in your own Shiny apps, do not hesitate to try this package.
Author: Le Zhang [aut, cre]
Maintainer: Le Zhang <lezhang100@gmail.com>
Diff between spsComps versions 0.2 dated 2021-05-04 and 0.3.0 dated 2021-05-18
spsComps-0.2/spsComps/R/dynamic_file.R |only spsComps-0.2/spsComps/man/bsHoverPopover.Rd |only spsComps-0.2/spsComps/man/dynamicFile.Rd |only spsComps-0.2/spsComps/man/loadDF.Rd |only spsComps-0.2/spsComps/man/tabTitle.Rd |only spsComps-0.3.0/spsComps/DESCRIPTION | 19 spsComps-0.3.0/spsComps/MD5 | 69 - spsComps-0.3.0/spsComps/NAMESPACE | 23 spsComps-0.3.0/spsComps/NEWS.md | 36 spsComps-0.3.0/spsComps/R/bs_components.R |only spsComps-0.3.0/spsComps/R/css_loader.R | 277 +++- spsComps-0.3.0/spsComps/R/depend.R | 71 - spsComps-0.3.0/spsComps/R/font_awesome_animate.R | 117 + spsComps-0.3.0/spsComps/R/pg_pane.R | 50 spsComps-0.3.0/spsComps/R/popover_tip.R |only spsComps-0.3.0/spsComps/R/spsServerCollections.R | 172 -- spsComps-0.3.0/spsComps/R/spsUIcollections.R | 316 +--- spsComps-0.3.0/spsComps/R/util.R | 78 + spsComps-0.3.0/spsComps/R/zzz.R | 3 spsComps-0.3.0/spsComps/README.md | 82 + spsComps-0.3.0/spsComps/inst/assets/css/css_loader.css | 9 spsComps-0.3.0/spsComps/inst/assets/css/sps-comps.css | 105 - spsComps-0.3.0/spsComps/inst/assets/css/sps_pg_panel.css |only spsComps-0.3.0/spsComps/inst/assets/js/bs3pop_tip.js | 756 ++++++++++- spsComps-0.3.0/spsComps/inst/assets/js/sps_cssloader.js | 108 - spsComps-0.3.0/spsComps/inst/assets/js/sps_sweetalert.js |only spsComps-0.3.0/spsComps/inst/assets/js/sps_update_pg.js | 50 spsComps-0.3.0/spsComps/inst/assets/js/sweetalert2_202105.js |only spsComps-0.3.0/spsComps/man/addLoader.Rd | 169 ++ spsComps-0.3.0/spsComps/man/animateAppend.Rd |only spsComps-0.3.0/spsComps/man/animateIcon.Rd | 10 spsComps-0.3.0/spsComps/man/animateUI.Rd | 6 spsComps-0.3.0/spsComps/man/bsAlert.Rd |only spsComps-0.3.0/spsComps/man/bsPopover.Rd |only spsComps-0.3.0/spsComps/man/bsTooltip.Rd |only spsComps-0.3.0/spsComps/man/cssLoader.Rd | 44 spsComps-0.3.0/spsComps/man/heightMatcher.Rd | 2 spsComps-0.3.0/spsComps/man/hexPanel.Rd | 2 spsComps-0.3.0/spsComps/man/pgPaneUpdate.Rd | 5 spsComps-0.3.0/spsComps/man/spsCodeBtn.Rd | 2 spsComps-0.3.0/spsComps/man/spsDepend.Rd | 24 spsComps-0.3.0/spsComps/man/spsHr.Rd | 56 spsComps-0.3.0/spsComps/man/spsTitle.Rd |only 43 files changed, 1896 insertions(+), 765 deletions(-)
Title: Calculating Spatial Risk
Description: Methods for spatial risk calculations. It offers an efficient approach to determine the sum of all observations within a
circle of a certain radius. This might be beneficial for insurers who are required (by a recent European Commission regulation) to determine
the maximum value of insured fire risk policies of all buildings that are partly or fully located within a circle of a radius of 200m. See
Church (1974) <doi:10.1007/BF01942293> for a description of the problem.
Author: Martin Haringa [aut, cre]
Maintainer: Martin Haringa <mtharinga@gmail.com>
Diff between spatialrisk versions 0.6.7 dated 2020-04-23 and 0.6.8 dated 2021-05-18
spatialrisk-0.6.7/spatialrisk/data/datalist |only spatialrisk-0.6.7/spatialrisk/data/europe_countries.rda |only spatialrisk-0.6.7/spatialrisk/data/nl_postcode1.rda |only spatialrisk-0.6.7/spatialrisk/data/world_countries.rda |only spatialrisk-0.6.7/spatialrisk/man/europe_countries.Rd |only spatialrisk-0.6.7/spatialrisk/man/figures/example3b-1.png |only spatialrisk-0.6.7/spatialrisk/man/nl_postcode1.Rd |only spatialrisk-0.6.7/spatialrisk/man/world_countries.Rd |only spatialrisk-0.6.8/spatialrisk/DESCRIPTION | 20 ++- spatialrisk-0.6.8/spatialrisk/MD5 | 52 +++++---- spatialrisk-0.6.8/spatialrisk/NAMESPACE | 29 +++++ spatialrisk-0.6.8/spatialrisk/NEWS.md | 5 spatialrisk-0.6.8/spatialrisk/R/RcppExports.R | 4 spatialrisk-0.6.8/spatialrisk/R/concentration.R | 26 +--- spatialrisk-0.6.8/spatialrisk/R/highest_concentration.R |only spatialrisk-0.6.8/spatialrisk/R/knmi_historic.R | 14 +- spatialrisk-0.6.8/spatialrisk/R/nl_gemeente.R | 34 ----- spatialrisk-0.6.8/spatialrisk/R/points_in_circle.R | 8 - spatialrisk-0.6.8/spatialrisk/R/utils.R |only spatialrisk-0.6.8/spatialrisk/R/zzz.R | 8 + spatialrisk-0.6.8/spatialrisk/man/add_gh_bbox_sum.Rd |only spatialrisk-0.6.8/spatialrisk/man/add_gh_nghbrs_sum.Rd |only spatialrisk-0.6.8/spatialrisk/man/concentration.Rd | 16 -- spatialrisk-0.6.8/spatialrisk/man/figures/example3a-1.png |only spatialrisk-0.6.8/spatialrisk/man/figures/example3d-1.png |binary spatialrisk-0.6.8/spatialrisk/man/figures/example4b-1.png |only spatialrisk-0.6.8/spatialrisk/man/figures/example4d-1.png |only spatialrisk-0.6.8/spatialrisk/man/figures/unnamed-chunk-12-1.png |only spatialrisk-0.6.8/spatialrisk/man/figures/unnamed-chunk-14-1.png |only spatialrisk-0.6.8/spatialrisk/man/highest_concentration.Rd |only spatialrisk-0.6.8/spatialrisk/man/lower_bound_fn.Rd |only spatialrisk-0.6.8/spatialrisk/man/neighborhood_gh_search.Rd |only spatialrisk-0.6.8/spatialrisk/man/plot.Rd |only spatialrisk-0.6.8/spatialrisk/man/plot.concentration.Rd |only spatialrisk-0.6.8/spatialrisk/man/points_in_circle.Rd | 2 spatialrisk-0.6.8/spatialrisk/man/reexports.Rd |only spatialrisk-0.6.8/spatialrisk/src/RcppExports.cpp | 15 ++ spatialrisk-0.6.8/spatialrisk/src/cheap_cpp.cpp |only spatialrisk-0.6.8/spatialrisk/src/haversine_cpp.cpp | 57 +++++++++- 39 files changed, 185 insertions(+), 105 deletions(-)
Title: Robust Covariance Matrix Estimators
Description: Object-oriented software for model-robust covariance matrix estimators. Starting out from the basic
robust Eicker-Huber-White sandwich covariance methods include: heteroscedasticity-consistent (HC)
covariances for cross-section data; heteroscedasticity- and autocorrelation-consistent (HAC)
covariances for time series data (such as Andrews' kernel HAC, Newey-West, and WEAVE estimators);
clustered covariances (one-way and multi-way); panel and panel-corrected covariances;
outer-product-of-gradients covariances; and (clustered) bootstrap covariances. All methods are
applicable to (generalized) linear model objects fitted by lm() and glm() but can also be adapted
to other classes through S3 methods. Details can be found in Zeileis et al. (2020) <doi:10.18637/jss.v095.i01>,
Zeileis (2004) <doi:10.18637/jss.v011.i10> and Zeileis (2006) <doi:10.18637/jss.v016.i09>.
Author: Achim Zeileis [aut, cre] (<https://orcid.org/0000-0003-0918-3766>),
Thomas Lumley [aut],
Nathaniel Graham [ctb],
Susanne Koell [ctb]
Maintainer: Achim Zeileis <Achim.Zeileis@R-project.org>
Diff between sandwich versions 3.0-0 dated 2020-10-02 and 3.0-1 dated 2021-05-18
DESCRIPTION | 12 +++---- MD5 | 58 +++++++++++++++++------------------ NEWS.md | 22 ++++++++++++- R/vcovBS.R | 3 + R/vcovBS.lm.R | 6 +++ R/vcovCL.R | 3 + R/vcovHC.R | 16 +++++++++ R/vcovPC.R | 3 + R/vcovPL.R | 3 + build/partial.rdb |binary build/vignette.rds |binary data/InstInnovation.rda |binary data/Investment.rda |binary data/PetersenCL.rda |binary data/PublicSchools.rda |binary inst/doc/sandwich-CL.Rnw | 2 - inst/doc/sandwich-CL.pdf |binary inst/doc/sandwich-OOP.Rnw | 2 - inst/doc/sandwich-OOP.pdf |binary inst/doc/sandwich.Rnw | 2 - inst/doc/sandwich.pdf |binary man/vcovBS.Rd | 2 - man/vcovHC.Rd | 5 ++- man/vcovPC.Rd | 14 ++++++-- man/vcovPL.Rd | 12 ++++--- tests/Examples/sandwich-Ex.Rout.save | 34 +------------------- vignettes/hac.bib | 2 - vignettes/sandwich-CL.Rnw | 2 - vignettes/sandwich-OOP.Rnw | 2 - vignettes/sandwich.Rnw | 2 - 30 files changed, 122 insertions(+), 85 deletions(-)
Title: Fast Data Aggregation, Modification, and Filtering with Pipes
and 'data.table'
Description: Provides pipe-style interface for 'data.table'. Package preserves all 'data.table' features without
significant impact on performance. 'let' and 'take' functions are simplified interfaces for most common data
manipulation tasks. For example, you can write 'take(mtcars, mean(mpg), by = am)' for aggregation or
'let(mtcars, hp_wt = hp/wt, hp_wt_mpg = hp_wt/mpg)' for modification. Use 'take_if/let_if' for conditional
aggregation/modification. Additionally there are some conveniences such as automatic 'data.frame'
conversion to 'data.table'.
Author: Gregory Demin [aut, cre]
Maintainer: Gregory Demin <gdemin@gmail.com>
Diff between maditr versions 0.7.4 dated 2020-07-29 and 0.8.1 dated 2021-05-18
DESCRIPTION | 13 MD5 | 71 ++-- NAMESPACE | 16 NEWS | 11 R/columns.R |only R/cube.R | 6 R/dcast.R | 6 R/dt_utils.R | 16 R/let.R | 222 +++++++++--- R/let_all.R | 123 ++++--- R/maditr.R | 86 ++++ R/on_attach.R | 19 - R/query.R | 11 R/text_expand.R |only R/to_list.R | 66 +-- R/to_wide.R |only R/utils.R | 64 ++- R/verbs.R | 102 ----- build/vignette.rds |binary inst/doc/Introduction.R | 79 +++- inst/doc/Introduction.Rmd | 105 +++++- inst/doc/Introduction.html | 674 +++++++++++++++++---------------------- inst/tinytest/test_columns.R |only inst/tinytest/test_dplyr_verbs.R | 46 -- inst/tinytest/test_let_all.R | 19 + inst/tinytest/test_selectors.R |only inst/tinytest/test_text_expand.R |only inst/tinytest/test_to_list.R | 59 ++- inst/tinytest/test_to_wide.R |only inst/tinytest/test_utils.R | 262 ++++++++------- inst/tinytest/test_verbs.R | 46 ++ man/columns.Rd |only man/copy.Rd |only man/dcast.Rd | 1 man/dt_mutate.Rd | 6 man/let_if.Rd | 70 +++- man/maditr.Rd | 78 +++- man/reexports.Rd | 6 man/text_expand.Rd |only man/to_list.Rd | 6 man/to_long.Rd |only vignettes/Introduction.Rmd | 105 +++++- 42 files changed, 1431 insertions(+), 963 deletions(-)
Title: Gillespie's Stochastic Simulation Algorithm for Impatient People
Description: A fast, scalable, and versatile framework for
simulating large systems with Gillespie's Stochastic Simulation
Algorithm ('SSA'). This package is the spiritual successor to the
'GillespieSSA' package originally written by Mario Pineda-Krch.
Benefits of this package include major speed improvements (>100x),
easier to understand documentation, and many unit tests that try to
ensure the package works as intended. Cannoodt and Saelens et al. (2020)
<doi:10.1101/2020.02.06.936971>.
Author: Robrecht Cannoodt [aut, cre] (<https://orcid.org/0000-0003-3641-729X>),
Wouter Saelens [aut] (<https://orcid.org/0000-0002-7114-6248>)
Maintainer: Robrecht Cannoodt <rcannood@gmail.com>
Diff between GillespieSSA2 versions 0.2.7 dated 2020-07-14 and 0.2.8 dated 2021-05-18
DESCRIPTION | 17 - MD5 | 47 +-- NEWS.md | 6 R/compile_reactions.R | 31 ++ README.md | 63 ++-- build/partial.rdb |binary build/vignette.rds |binary inst/CITATION |only inst/doc/an_introduction.html | 280 +++----------------- inst/doc/converting_from_GillespieSSA.html | 350 ++++++------------------- inst/doc/decaying_dimer.html | 320 +++++------------------ inst/doc/epi_chain.html | 394 +++++++---------------------- inst/doc/linear_chain.html | 330 +++++------------------- inst/doc/logistic_growth.html | 316 +++++------------------ inst/doc/lotka_predator_prey.html | 318 +++++------------------ inst/doc/radioactive_decay.html | 314 +++++------------------ inst/doc/rm_predator_prey.html | 338 +++++------------------- inst/doc/sir.html | 316 +++++------------------ man/compile_reactions.Rd | 32 ++ src/ode_em.cpp | 2 src/ssa_btl.cpp | 1 src/ssa_etl.cpp | 2 src/ssa_exact.cpp | 2 src/utils.cpp | 2 tests/testthat/test-ssa.R | 39 ++ 25 files changed, 933 insertions(+), 2587 deletions(-)
Title: Binary Expansion Testing
Description: Nonparametric detection of nonuniformity and dependence with Binary Expansion Testing (BET). See Kai Zhang (2019) BET on Independence, Journal of the American Statistical Association, 114:528, 1620-1637, <DOI:10.1080/01621459.2018.1537921> and Zhigen Zhao, Michael Baiocchi, Kai Zhang. SorBET: A Fast and Powerful Algorithm to Test Dependence of Variables.
Author: Wan Zhang [aut, cre],
Zhigen Zhao [aut],
Michael Baiocchi [aut],
Kai Zhang [aut]
Maintainer: Wan Zhang <wanz63@live.unc.edu>
Diff between BET versions 0.3.7 dated 2021-04-19 and 0.3.8 dated 2021-05-18
DESCRIPTION | 6 +++--- MD5 | 6 +++--- build/partial.rdb |binary man/Beast.Rd | 8 ++++---- 4 files changed, 10 insertions(+), 10 deletions(-)
More information about HotellingEllipse at CRAN
Permanent link
Title: Variance and Skewness Decomposition
Description: Provides decomposition methods for the skewness or variance of a variable (e.g., wage).
By breaking distribution moments into independent components, users can
analyze changes in distributions across time or between groups.
Author: Elad Guttman [aut, cre],
Oren Danieli [aut]
Maintainer: Elad Guttman <eladguttman@mail.tau.ac.il>
Diff between VSdecomp versions 0.1.0 dated 2021-02-17 and 0.1.1 dated 2021-05-18
DESCRIPTION | 9 +-- MD5 | 16 +++--- R/linear_decomposition.R | 9 ++- R/plot.R | 78 +++++++++++++++++++++++++------- R/skewness_functions.R | 4 - R/summary.R | 4 - R/vs_decomp.R | 2 man/plot.vs_decomp.Rd | 23 ++++++++- tests/testthat/test_linear_projection.R | 12 +++- 9 files changed, 113 insertions(+), 44 deletions(-)
More information about ECSFargateProvider at CRAN
Permanent link
Title: Tidy Interface to 'data.table'
Description: A tidy interface to 'data.table' that is 'rlang' compatible,
giving users the speed of 'data.table' with the clean syntax of the tidyverse.
Author: Mark Fairbanks [aut, cre],
Abdessabour Moutik [ctb],
Matt Carlson [ctb],
Ivan Leung [ctb],
Ross Kennedy [ctb]
Maintainer: Mark Fairbanks <mark.t.fairbanks@gmail.com>
Diff between tidytable versions 0.6.1 dated 2021-04-16 and 0.6.2 dated 2021-05-18
tidytable-0.6.1/tidytable/R/utils-selectors.R |only tidytable-0.6.2/tidytable/DESCRIPTION | 6 tidytable-0.6.2/tidytable/MD5 | 134 ++++++------ tidytable-0.6.2/tidytable/NAMESPACE | 41 +++ tidytable-0.6.2/tidytable/NEWS.md | 16 + tidytable-0.6.2/tidytable/R/arrange.R | 12 - tidytable-0.6.2/tidytable/R/arrange_across.R | 2 tidytable-0.6.2/tidytable/R/complete.R | 8 tidytable-0.6.2/tidytable/R/count.R | 10 tidytable-0.6.2/tidytable/R/cumulative.R |only tidytable-0.6.2/tidytable/R/cur_group.R |only tidytable-0.6.2/tidytable/R/distinct.R | 13 - tidytable-0.6.2/tidytable/R/drop_na.R | 17 - tidytable-0.6.2/tidytable/R/dt.R | 10 tidytable-0.6.2/tidytable/R/expand.R | 37 ++- tidytable-0.6.2/tidytable/R/extract.R | 14 - tidytable-0.6.2/tidytable/R/fill.R | 22 + tidytable-0.6.2/tidytable/R/filter.R | 27 +- tidytable-0.6.2/tidytable/R/get_dummies.R | 50 +++- tidytable-0.6.2/tidytable/R/group_split.R | 22 + tidytable-0.6.2/tidytable/R/mutate.R | 110 ++++++++- tidytable-0.6.2/tidytable/R/mutate_across.R | 6 tidytable-0.6.2/tidytable/R/mutate_rowwise.R | 10 tidytable-0.6.2/tidytable/R/n_distinct.R |only tidytable-0.6.2/tidytable/R/nest.R | 12 - tidytable-0.6.2/tidytable/R/nest_by.R | 10 tidytable-0.6.2/tidytable/R/pivot_longer.R | 63 +++-- tidytable-0.6.2/tidytable/R/pivot_wider.R | 54 +++- tidytable-0.6.2/tidytable/R/relocate.R | 27 +- tidytable-0.6.2/tidytable/R/rename.R | 12 - tidytable-0.6.2/tidytable/R/rename_with.R | 14 - tidytable-0.6.2/tidytable/R/replace_na.R | 10 tidytable-0.6.2/tidytable/R/select.R | 35 +-- tidytable-0.6.2/tidytable/R/separate.R | 24 +- tidytable-0.6.2/tidytable/R/separate_rows.R | 22 + tidytable-0.6.2/tidytable/R/slice.R | 88 +++++-- tidytable-0.6.2/tidytable/R/summarize.R | 16 - tidytable-0.6.2/tidytable/R/summarize_across.R | 4 tidytable-0.6.2/tidytable/R/tidytable.R | 10 tidytable-0.6.2/tidytable/R/top_n.R | 11 tidytable-0.6.2/tidytable/R/transmute.R | 33 +- tidytable-0.6.2/tidytable/R/uncount.R | 11 tidytable-0.6.2/tidytable/R/unite.R | 13 - tidytable-0.6.2/tidytable/R/unnest.R | 24 +- tidytable-0.6.2/tidytable/R/utils-across.R | 5 tidytable-0.6.2/tidytable/R/utils-general.R | 16 + tidytable-0.6.2/tidytable/R/utils-prep_exprs.R | 18 - tidytable-0.6.2/tidytable/R/utils-stringr.R | 15 - tidytable-0.6.2/tidytable/R/utils-tidyselect.R |only tidytable-0.6.2/tidytable/README.md | 8 tidytable-0.6.2/tidytable/man/arrange..Rd | 2 tidytable-0.6.2/tidytable/man/cur_group_id..Rd |only tidytable-0.6.2/tidytable/man/drop_na..Rd | 4 tidytable-0.6.2/tidytable/man/expand..Rd | 10 tidytable-0.6.2/tidytable/man/fill..Rd | 2 tidytable-0.6.2/tidytable/man/filter..Rd | 2 tidytable-0.6.2/tidytable/man/group_split..Rd | 4 tidytable-0.6.2/tidytable/man/mutate..Rd | 29 ++ tidytable-0.6.2/tidytable/man/n_distinct..Rd |only tidytable-0.6.2/tidytable/man/rename..Rd | 2 tidytable-0.6.2/tidytable/man/rename_with..Rd | 2 tidytable-0.6.2/tidytable/man/select..Rd | 16 - tidytable-0.6.2/tidytable/man/slice..Rd | 2 tidytable-0.6.2/tidytable/man/tidytable.Rd | 7 tidytable-0.6.2/tidytable/man/transmute..Rd | 9 tidytable-0.6.2/tidytable/tests/testthat/test-complete.R | 4 tidytable-0.6.2/tidytable/tests/testthat/test-cumulative.R |only tidytable-0.6.2/tidytable/tests/testthat/test-cur_group.R |only tidytable-0.6.2/tidytable/tests/testthat/test-expand.R | 31 ++ tidytable-0.6.2/tidytable/tests/testthat/test-filter.R | 17 + tidytable-0.6.2/tidytable/tests/testthat/test-group_split.R | 28 +- tidytable-0.6.2/tidytable/tests/testthat/test-mutate.R | 70 ++++++ tidytable-0.6.2/tidytable/tests/testthat/test-n_distinct.R |only 73 files changed, 947 insertions(+), 416 deletions(-)
Title: Functions to Support Extension Education Program Evaluation
Description: Functions and datasets to support "Summary and Analysis of
Extension Program Evaluation in R" and "An R
Companion for the Handbook of Biological Statistics".
Vignettes are available at <http://rcompanion.org>.
Author: Salvatore Mangiafico [aut, cre]
(<https://orcid.org/0000-0003-4668-6821>)
Maintainer: Salvatore Mangiafico <mangiafico@njaes.rutgers.edu>
Diff between rcompanion versions 2.4.0 dated 2021-03-23 and 2.4.1 dated 2021-05-18
DESCRIPTION | 11 ++--- MD5 | 16 ++++---- NAMESPACE | 1 R/groupwiseHuber.r | 19 +++++++--- R/groupwiseMean.r | 85 ++++++++++++++++++++++++++++++++------------- R/nominalSymmetryTest.r | 79 +++++++++++++++++++++++++---------------- man/groupwiseHuber.Rd | 14 +++++-- man/groupwiseMean.Rd | 35 +++++++++++++++--- man/nominalSymmetryTest.Rd | 32 ++++++---------- 9 files changed, 190 insertions(+), 102 deletions(-)
Title: Functions to Inline C, C++, Fortran Function Calls from R
Description: Functionality to dynamically define R functions and S4 methods
with 'inlined' C, C++ or Fortran code supporting the .C and .Call calling
conventions.
Author: Oleg Sklyar, Duncan Murdoch, Mike Smith, Dirk Eddelbuettel,
Romain Francois, Karline Soetaert, Johannes Ranke
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between inline versions 0.3.17 dated 2020-11-30 and 0.3.18 dated 2021-05-18
DESCRIPTION | 10 ++++++---- MD5 | 10 +++++----- R/utilities.R | 14 +++----------- build/partial.rdb |binary inst/NEWS.Rd | 7 +++++++ inst/tinytest/test_utilities.R | 6 ++---- 6 files changed, 23 insertions(+), 24 deletions(-)
Title: Basic and Advanced Statistical Power Analysis
Description: This is a collection of tools for conducting both basic and advanced statistical power analysis including correlation, proportion, t-test, one-way ANOVA, two-way ANOVA, linear regression, logistic regression, Poisson regression, mediation analysis, longitudinal data analysis, structural equation modeling and multilevel modeling. It also serves as the engine for conducting power analysis online at <https://webpower.psychstat.org>.
Author: Zhiyong Zhang [aut, cre],
Yujiao Mai [aut],
Miao Yang [ctb]
Maintainer: Zhiyong Zhang <johnnyzhz@gmail.com>
Diff between WebPower versions 0.5.2 dated 2018-11-29 and 0.6 dated 2021-05-18
DESCRIPTION | 8 +-- MD5 | 21 ++++--- R/webpower.R | 135 +++++++++++++++++++++++++++++---------------------- README.md |only man/nuniroot.Rd | 4 - man/wp.crt2arm.Rd | 3 - man/wp.crt3arm.Rd | 12 ++-- man/wp.mediation.Rd | 6 +- man/wp.mrt2arm.Rd | 10 ++- man/wp.mrt3arm.Rd | 14 +++-- man/wp.regression.Rd | 7 +- man/wp.rmanova.Rd | 2 12 files changed, 126 insertions(+), 96 deletions(-)
Title: Semisupervised Model for Geographical Document Classification
Description: Semissupervised model for geographical document classification (Watanabe 2018) <doi:10.1080/21670811.2017.1293487>.
This package currently contains seed dictionaries in English, German, French, Spanish, Italian, Russian, Hebrew, Arabic Japanese and Chinese (Simplified and Traditional).
Author: Kohei Watanabe [aut, cre, cph],
Stefan Müller [aut],
Dani Madrid-Morales [aut],
Katerina Tertytchnaya [aut],
Ke Cheng [aut],
Chung-hong Chan [aut],
Claude Grasland [aut],
Giuseppe Carteny [aut],
Elad Segev [aut],
Dai Yamao [aut]
Maintainer: Kohei Watanabe <watanabe.kohei@gmail.com>
Diff between newsmap versions 0.7.3 dated 2020-12-18 and 0.7.4 dated 2021-05-18
DESCRIPTION | 6 +-- MD5 | 8 ++-- NEWS.md | 11 ++++- R/textmodel_newsmap.R | 5 ++ tests/testthat/test-textmodel_newsmap.R | 60 +++++++++++++++++--------------- 5 files changed, 52 insertions(+), 38 deletions(-)
Title: Bias Correction under Censoring Plan
Description: Developed for the following tasks. Simulating, computing maximum likelihood
estimator, computing the Fisher information matrix, computing goodness-of-fit measures,
and correcting bias of the ML estimator for a wide range of distributions fitted to units
placed on progressive type-I interval censoring and progressive type-II censoring plans.
The methods of Cox and Snell (1968) <doi:10.1111/j.2517-6161.1968.tb00724.x> and
bootstrap method for computing the bias-corrected maximum likelihood estimator.
Author: Mahdi Teimouri
Maintainer: Mahdi Teimouri <teimouri@aut.ac.ir>
Diff between bccp versions 0.3.0 dated 2021-02-02 and 0.5.0 dated 2021-05-18
DESCRIPTION | 8 ++--- MD5 | 12 ++++---- R/bccp.R | 79 +++++++++++++++++++++++++++++++++++++---------------- man/bootbctype2.Rd | 5 ++- man/coxbctype1.Rd | 2 - man/coxbctype2.Rd | 2 - man/goftype1.Rd | 2 - 7 files changed, 73 insertions(+), 37 deletions(-)