Title: Test and Item Analysis via Shiny
Description: Package including functions and interactive shiny
application for the psychometric analysis of educational tests,
psychological assessments, health-related and other types of
multi-item measurements, or ratings from multiple raters.
Author: Patricia Martinkova [aut, cre],
Adela Hladka [aut],
Ondrej Leder [ctb],
Jakub Houdek [ctb],
Lubomir Stepanek [ctb],
Tomas Jurica [ctb],
Jana Vorlickova [ctb],
Jan Netik [ctb]
Maintainer: Patricia Martinkova <martinkova@cs.cas.cz>
Diff between ShinyItemAnalysis versions 1.3.6 dated 2021-03-20 and 1.3.7 dated 2021-05-31
DESCRIPTION | 8 MD5 | 91 ++- NAMESPACE | 4 NEWS.md | 20 R/AIBS.R | 7 R/BFI2.R |only R/CZmatura.R | 8 R/CZmaturaS.R | 8 R/MSclinical.R |only R/ShinyItemAnalysis-package.R | 2 R/TestAnxietyCor.R |only R/fa_parallel.R | 371 +++++++++----- R/is_corr.R |only R/moments.R | 1 R/plot_corr.R | 28 - R/theme_app.R | 1 README.md | 10 build/partial.rdb |binary data/BFI2.rda |only data/CZmatura.rda |binary data/CZmaturaS.rda |binary data/MSclinical.rda |only data/TestAnxietyCor.rda |only inst/shiny-examples/ShinyItemAnalysis/sc/irt/1pl.R | 22 inst/shiny-examples/ShinyItemAnalysis/sc/irt/1pl_item.R |only inst/shiny-examples/ShinyItemAnalysis/sc/irt/2pl.R | 4 inst/shiny-examples/ShinyItemAnalysis/sc/irt/2pl_item.R |only inst/shiny-examples/ShinyItemAnalysis/sc/irt/3pl.R | 4 inst/shiny-examples/ShinyItemAnalysis/sc/irt/3pl_item.R |only inst/shiny-examples/ShinyItemAnalysis/sc/irt/4pl.R | 8 inst/shiny-examples/ShinyItemAnalysis/sc/irt/4pl_item.R |only inst/shiny-examples/ShinyItemAnalysis/sc/irt/bock.R | 84 +++ inst/shiny-examples/ShinyItemAnalysis/sc/irt/bock_item.R |only inst/shiny-examples/ShinyItemAnalysis/sc/irt/rasch.R | 4 inst/shiny-examples/ShinyItemAnalysis/sc/irt/rasch_item.R |only inst/shiny-examples/ShinyItemAnalysis/server/Data.R | 16 inst/shiny-examples/ShinyItemAnalysis/server/IRT.R | 67 +- inst/shiny-examples/ShinyItemAnalysis/server/Validity.R | 144 ++++- inst/shiny-examples/ShinyItemAnalysis/ui.R | 2 inst/shiny-examples/ShinyItemAnalysis/ui/uiAbout.R | 6 inst/shiny-examples/ShinyItemAnalysis/ui/uiDIF.R | 4 inst/shiny-examples/ShinyItemAnalysis/ui/uiData.R | 20 inst/shiny-examples/ShinyItemAnalysis/ui/uiIRT.R | 30 + inst/shiny-examples/ShinyItemAnalysis/ui/uiReferences.R | 5 inst/shiny-examples/ShinyItemAnalysis/ui/uiValidity.R | 92 +-- man/AIBS.Rd | 7 man/BFI2.Rd |only man/CZmatura.Rd | 66 +- man/CZmaturaS.Rd | 68 +- man/MSclinical.Rd |only man/ShinyItemAnalysis-package.Rd | 2 man/TestAnxietyCor.Rd |only man/fa_parallel.Rd | 64 +- man/plot.sia_parallel.Rd |only man/plot_corr.Rd | 2 55 files changed, 869 insertions(+), 411 deletions(-)
More information about ShinyItemAnalysis at CRAN
Permanent link
Title: Rapid Automatic Keyword Extraction (RAKE) Algorithm
Description: A 'Java' implementation of the RAKE algorithm ('Rose', S., 'Engel', D.,
'Cramer', N. and 'Cowley', W. (2010) <doi:10.1002/9780470689646.ch1>), which can
be used to extract keywords from documents without any training data.
Author: Christopher Baker [aut, cre]
Maintainer: Christopher Baker <chriscrewbaker@gmail.com>
Diff between rapidraker versions 0.1.1 dated 2021-05-31 and 0.1.2 dated 2021-05-31
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- README.md | 33 +++++++++++++++++++++++++-------- inst/java/rapidrake-0.1.4.jar |binary 4 files changed, 32 insertions(+), 15 deletions(-)
Title: Projected Refinement for Imputation of Missing Entries in PCA
Description: Implements the primePCA algorithm, developed and analysed in Zhu, Z., Wang, T. and Samworth, R. J. (2019) High-dimensional principal component analysis with heterogeneous missingness. <arXiv:1906.12125>.
Author: Ziwei Zhu, Tengyao Wang, Richard J. Samworth
Maintainer: Ziwei Zhu <ziweiz@umich.edu>
Diff between primePCA versions 1.0 dated 2019-07-02 and 1.1 dated 2021-05-31
primePCA-1.0/primePCA/R/code.R |only primePCA-1.0/primePCA/build |only primePCA-1.0/primePCA/man/primePCA-package.Rd |only primePCA-1.1/primePCA/DESCRIPTION | 10 +++--- primePCA-1.1/primePCA/MD5 | 14 ++++----- primePCA-1.1/primePCA/R/code_full_new.R |only primePCA-1.1/primePCA/man/col_scale.Rd | 2 - primePCA-1.1/primePCA/man/inverse_prob_method.Rd | 10 +++--- primePCA-1.1/primePCA/man/primePCA.Rd | 34 ++++++++++++++++------- primePCA-1.1/primePCA/man/sin_theta_distance.Rd | 2 - 10 files changed, 42 insertions(+), 30 deletions(-)
Title: Utilities for the Forest Research Institute of the State
Baden-Wuerttemberg
Description: Miscellaneous utilities, tools and helper
functions for finding and searching files on disk, searching for and
removing R objects from the workspace.
These are utilities for packages
<https://CRAN.R-project.org/package=cleanr>,
<https://CRAN.R-project.org/package=document>,
<https://CRAN.R-project.org/package=fakemake>,
<https://CRAN.R-project.org/package=packager> and
<https://CRAN.R-project.org/package=rasciidoc>.
Does not import or depend on any third party package, but on core R
only (i.e it may depend on packages with priority 'base').
Author: Andreas Dominik Cullmann [aut, cre]
Maintainer: Andreas Dominik Cullmann <fvafrcu@mailbox.org>
Diff between fritools versions 1.4.0 dated 2021-03-20 and 2.0.0 dated 2021-05-31
DESCRIPTION | 7 ++-- MD5 | 36 ++++++++++++++---------- NAMESPACE | 3 ++ NEWS.md | 7 ++++ R/convert_umlauts_to_tex.R |only R/find_files.R | 4 +- R/is_success.R |only R/paths.R | 1 R/search_files.R | 25 +++++++++++----- R/search_rows.R |only README.md | 4 +- build/vignette.rds |binary inst/NEWS.rd | 9 ++++++ inst/runit_tests/runit-convert_umlauts_to_tex.R |only inst/runit_tests/runit-search_files.R | 4 ++ inst/runit_tests/runit-search_rows.R |only inst/runit_tests/runit-weighted_variance.R | 3 ++ man/convert_umlauts_to_tex.Rd |only man/find_files.Rd | 7 ++-- man/is_success.Rd |only man/search_files.Rd | 6 ++-- man/search_rows.Rd |only man/summary.filesearch.Rd | 25 ++++++++++++++-- 23 files changed, 102 insertions(+), 39 deletions(-)
Title: Efficient Fitting of Linear and Generalized Linear Models
Description: Efficient Fitting of Linear and Generalized Linear Models by using
just base R. As an alternative to lm() and glm(), this package provides elm()
and eglm(), with a significant speedup when the number of
observations is larger than the number of parameters to estimate. The speed
gains are obtained by reducing the NxP model matrix to a PxP matrix, and the
best computational performance is obtained when R is linked against 'OpenBLAS',
'Intel MKL' or other optimized 'BLAS' library. This implementation aims at being
compatible with 'broom' and 'sandwich' packages for summary statistics and
clustering by providing S3 methods.
Author: Mauricio Vargas [aut, cre] (<https://orcid.org/0000-0003-1017-7574>),
Alexey Kravchenko [ths],
Constanza Prado [ths],
Yoto Yotov [ths],
Neal Fulz [rev] (independent code auditing),
Rahul Saxena [ctb] (improved broom integration),
The United Nations [dtc, cph, fnd]
Maintainer: Mauricio Vargas <mavargas11@uc.cl>
Diff between eflm versions 0.1 dated 2021-02-15 and 0.3.0 dated 2021-05-31
eflm-0.1/eflm/R/99-broom-add_hat_sigma_cols.R |only eflm-0.1/eflm/R/99-broom-as_augment_tibble.R |only eflm-0.1/eflm/R/99-broom-augment-eglm.R |only eflm-0.1/eflm/R/99-broom-confint_terms.R |only eflm-0.1/eflm/R/99-broom-data_error.R |only eflm-0.1/eflm/R/99-broom-exponentiate.R |only eflm-0.1/eflm/R/99-broom-has_rownames.R |only eflm-0.1/eflm/R/99-broom-influence-eglm.R |only eflm-0.1/eflm/R/99-broom-tidy-eglm.R |only eflm-0.1/eflm/R/99-sandwich-bread-eglm.R |only eflm-0.1/eflm/R/99-sandwich-estfun-eglm.R |only eflm-0.1/eflm/R/99-sandwich-matpower.R |only eflm-0.1/eflm/R/99-sandwich-meat-eglm.R |only eflm-0.1/eflm/R/99-sandwich-meatCL-eglm.R |only eflm-0.1/eflm/R/AIC-eglm.R |only eflm-0.1/eflm/R/Fstat.R |only eflm-0.1/eflm/R/add1-eglm.R |only eflm-0.1/eflm/R/coef-eglm.R |only eflm-0.1/eflm/R/control.R |only eflm-0.1/eflm/R/cp.R |only eflm-0.1/eflm/R/drop1-eglm.R |only eflm-0.1/eflm/R/extractAIC-eglm.R |only eflm-0.1/eflm/R/family-eglm.R |only eflm-0.1/eflm/R/fitted-eglm.R |only eflm-0.1/eflm/R/formula-elm.R |only eflm-0.1/eflm/R/ll.R |only eflm-0.1/eflm/R/logLik.R |only eflm-0.1/eflm/R/model_matrix.R |only eflm-0.1/eflm/R/nobs.R |only eflm-0.1/eflm/R/predict-eglm.R |only eflm-0.1/eflm/R/predict-elm.R |only eflm-0.1/eflm/R/print-eglm.R |only eflm-0.1/eflm/R/print-elm.R |only eflm-0.1/eflm/R/print-logLik-eglm.R |only eflm-0.1/eflm/R/print-logLik-elm.R |only eflm-0.1/eflm/R/print-summary-eglm.R |only eflm-0.1/eflm/R/print-summary-elm.R |only eflm-0.1/eflm/R/residuals-eglm.R |only eflm-0.1/eflm/R/safe_pchisq.R |only eflm-0.1/eflm/R/safe_pf.R |only eflm-0.1/eflm/R/summary-eglm.R |only eflm-0.1/eflm/R/summary-elm.R |only eflm-0.1/eflm/R/update-elm.R |only eflm-0.1/eflm/R/update_with_more_data.R |only eflm-0.1/eflm/R/vcov-eglm.R |only eflm-0.1/eflm/man/predict.eglm.Rd |only eflm-0.1/eflm/man/summary.elm.Rd |only eflm-0.1/eflm/tests/testthat/test-add.R |only eflm-0.1/eflm/tests/testthat/test-aic.R |only eflm-0.1/eflm/tests/testthat/test-drop.R |only eflm-0.1/eflm/tests/testthat/test-eglm.R |only eflm-0.1/eflm/tests/testthat/test-elm.R |only eflm-0.1/eflm/tests/testthat/test-predict.R |only eflm-0.1/eflm/tests/testthat/test-stats.R |only eflm-0.1/eflm/tests/testthat/test-summary-eglm.R |only eflm-0.1/eflm/tests/testthat/test-summary-elm.R |only eflm-0.3.0/eflm/DESCRIPTION | 54 +- eflm-0.3.0/eflm/MD5 | 101 +--- eflm-0.3.0/eflm/NAMESPACE | 76 --- eflm-0.3.0/eflm/NEWS.md |only eflm-0.3.0/eflm/R/99-broom.R |only eflm-0.3.0/eflm/R/99-sandwich.R |only eflm-0.3.0/eflm/R/eflm-package.R |only eflm-0.3.0/eflm/R/eglm-summary.R |only eflm-0.3.0/eflm/R/eglm-vcov-summary.R |only eflm-0.3.0/eflm/R/eglm-vcov.R |only eflm-0.3.0/eflm/R/eglm-wfit.R | 421 ++++++++++++++------ eflm-0.3.0/eflm/R/eglm.R | 310 ++++++++++---- eflm-0.3.0/eflm/R/elm-summary.R |only eflm-0.3.0/eflm/R/elm-vcov-summary.R |only eflm-0.3.0/eflm/R/elm-vcov.R |only eflm-0.3.0/eflm/R/elm-wfit.R | 244 +++++++---- eflm-0.3.0/eflm/R/elm.R | 200 +++++---- eflm-0.3.0/eflm/R/zzz.R | 17 eflm-0.3.0/eflm/inst |only eflm-0.3.0/eflm/man/eflm-package.Rd |only eflm-0.3.0/eflm/man/eglm.Rd | 178 +++++--- eflm-0.3.0/eflm/man/eglm.wfit.Rd |only eflm-0.3.0/eflm/man/elm.Rd | 151 ++++--- eflm-0.3.0/eflm/man/elm.wfit.Rd |only eflm-0.3.0/eflm/man/figures |only eflm-0.3.0/eflm/tests/testthat/helper-data.R |only eflm-0.3.0/eflm/tests/testthat/helper-expectation.R |only eflm-0.3.0/eflm/tests/testthat/test-add-drop.R |only eflm-0.3.0/eflm/tests/testthat/test-broom.R | 72 +-- eflm-0.3.0/eflm/tests/testthat/test-fitting.R |only eflm-0.3.0/eflm/tests/testthat/test-sandwich.R | 90 +++- eflm-0.3.0/eflm/tests/testthat/test-summary.R |only 88 files changed, 1198 insertions(+), 716 deletions(-)
Title: Data.gov.in API Wrapper
Description: This wrapper allows the user to communicate with more than
80,000 API posted on data.gov.in - open data
platform of the government of India <https:data.gov.in/ogpl_apis>.
It also allows the user to search for the API required through the universe
of the API with a better interface than the one the official website provides.
Once a user has the ID by using the API discovery functionalities,
it allows one to converse with the API using a consistent format across all
available API.
Author: Abhishek Arora [cre, aut],
Aditya Chhabra [aut]
Maintainer: Abhishek Arora <abhishek.arora1996@gmail.com>
Diff between datagovindia versions 0.0.3 dated 2021-04-08 and 1.0.4 dated 2021-05-31
DESCRIPTION | 10 +- MD5 | 19 ++- NAMESPACE | 5 + NEWS.md | 11 ++ R/key_func.R | 174 +++++++++++++++++++++++++++++++----- R/utils.R | 26 +++++ README.md | 53 ++++++++-- inst/doc/datagovindia_vignette.html | 172 ++++++++++++++++++----------------- man/check_datagovin_server.Rd |only man/get_recently_created_api.Rd |only man/get_recently_updated_api.Rd |only man/search_api_by_created_date.Rd |only man/search_api_by_updated_date.Rd |only 13 files changed, 342 insertions(+), 128 deletions(-)
Title: Sensitivities of Prices of Financial Options
Description: Methods to calculate sensitivities of financial option
prices for European and Asian options in the Black Scholes model. Classical
formulas are implemented for European options in the Black Scholes Model, as
is presented in Hull, J. C. (2017). Options, Futures, and Other Derivatives,
Global Edition (9th Edition). Pearson. In the case of Asian options, Malliavin
Monte Carlo Greeks are implemented, see Hudde, A. & Rüschendorf, L. (2016).
European and Asian Malliavin Monte Carlo Greeks for general Jump Diffusions
with nonvanishing Brownian motion part. <arXiv:1603.00920>.
Author: Anselm Hudde [aut, cre] (<https://orcid.org/0000-0002-5652-2815>)
Maintainer: Anselm Hudde <anselmhudde@gmx.de>
Diff between greeks versions 0.0.1 dated 2021-05-06 and 0.2.0 dated 2021-05-31
DESCRIPTION | 26 ++--- LICENSE | 4 MD5 | 20 ++-- NAMESPACE | 6 - R/BS_European_Options.R | 3 R/Malliavin_Asian_Greeks.R | 160 ++++++++++++++++++++++---------- R/Malliavin_European_Greeks.R |only man/BS_European_Greeks.Rd | 132 +++++++++++++------------- man/Malliavin_Asian_Greeks.Rd | 194 +++++++++++++++++++++------------------ man/Malliavin_European_Greeks.Rd |only tests/testthat.R | 8 - tests/testthat/test-.R | 6 - 12 files changed, 321 insertions(+), 238 deletions(-)
Title: Election Vote Counting
Description: Counting election votes and determining election results by different methods, including
the single transferable vote or ranked choice, approval, score, plurality, condorcet and two-round runoff methods (Raftery et al. (2021) <arXiv:2102.05801>).
Author: Hana Sevcikova, Bernard Silverman, Adrian Raftery
Maintainer: Hana Sevcikova<hanas@uw.edu>
Diff between vote versions 2.2-0 dated 2021-02-12 and 2.2-1 dated 2021-05-31
ChangeLog | 7 ++++++- DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/stv.R | 8 +++++--- man/stv.Rd | 6 ++++-- 5 files changed, 23 insertions(+), 14 deletions(-)
Title: Stochastic Blockmodels
Description: A collection of tools and functions to adjust a variety of stochastic blockmodels (SBM).
Supports at the moment Simple, Bipartite, 'Multipartite' and Multiplex SBM (undirected or directed with Bernoulli,
Poisson or Gaussian emission laws on the edges, and possibly covariate for Simple and Bipartite SBM).
See Léger (2016) <arxiv:1602.07587>, 'Barbillon et al.' (2020) <doi:10.1111/rssa.12193> and
'Bar-Hen et al.' (2020) <arxiv:1807.10138>.
Author: Julien Chiquet [aut, cre] (<https://orcid.org/0000-0002-3629-3429>),
Sophie Donnet [aut] (<https://orcid.org/0000-0003-4370-7316>),
großBM team [ctb],
Pierre Barbillon [aut] (<https://orcid.org/0000-0002-7766-7693>)
Maintainer: Julien Chiquet <julien.chiquet@inrae.fr>
Diff between sbm versions 0.4.1 dated 2021-05-21 and 0.4.2 dated 2021-05-31
DESCRIPTION | 6 +- MD5 | 26 ++++----- NEWS.md | 4 + R/estimate.R | 4 - R/utils_plot.R | 6 +- build/vignette.rds |binary inst/doc/Multipartite_EcologicalNetwork.html | 20 +++++- inst/doc/MultiplexNetwork_principle.html | 46 +++++++++++++--- inst/doc/Multiplex_allianceNwar_case_study.Rmd | 2 inst/doc/Multiplex_allianceNwar_case_study.html | 40 +++++++++++-- inst/doc/SBM_fungus_tree_network.html | 69 +++++++++++++++++++----- man/estimateBipartiteSBM.Rd | 2 man/estimateSimpleSBM.Rd | 2 vignettes/Multiplex_allianceNwar_case_study.Rmd | 2 14 files changed, 171 insertions(+), 58 deletions(-)
Title: Record 'HTTP' Calls to Disk
Description: Record test suite 'HTTP' requests and replays them during
future runs. A port of the Ruby gem of the same name
(<https://github.com/vcr/vcr/>). Works by hooking into the 'webmockr'
R package for matching 'HTTP' requests by various rules ('HTTP' method,
'URL', query parameters, headers, body, etc.), and then caching
real 'HTTP' responses on disk in 'cassettes'. Subsequent 'HTTP' requests
matching any previous requests in the same 'cassette' use a cached
'HTTP' response.
Author: Scott Chamberlain [aut, cre] (<https://orcid.org/0000-0003-1444-9135>),
Aaron Wolen [ctb] (<https://orcid.org/0000-0003-2542-2202>),
Maëlle Salmon [ctb] (<https://orcid.org/0000-0002-2815-0399>),
rOpenSci [fnd] (https://ropensci.org)
Maintainer: Scott Chamberlain <sckott@protonmail.com>
Diff between vcr versions 1.0.0 dated 2021-05-22 and 1.0.2 dated 2021-05-31
DESCRIPTION | 6 - MD5 | 28 ++++---- NEWS.md | 7 ++ R/vcr_test_path.R | 5 + inst/doc/cassette-manual-editing.html | 49 ++------------- inst/doc/configuration.html | 100 ++++++-------------------------- inst/doc/debugging.html | 100 ++++++-------------------------- inst/doc/design.html | 40 ------------ inst/doc/internals.html | 49 ++------------- inst/doc/lightswitch.html | 100 ++++++-------------------------- inst/doc/record-modes.html | 100 ++++++-------------------------- inst/doc/request_matching.html | 100 ++++++-------------------------- inst/doc/vcr.html | 100 ++++++-------------------------- inst/doc/write-to-disk.html | 106 +++++++--------------------------- man/vcr_test_path.Rd | 4 + 15 files changed, 187 insertions(+), 707 deletions(-)
Title: Parameter Optimizing of ODE-Systems
Description: Enable optimization of parameters of ordinary differential equations. Therefore, using 'SUNDIALS' to solve the ODE-System (see Hindmarsh, Alan C., Peter N. Brown, Keith E. Grant, Steven L. Lee, Radu Serban, Dan E. Shumaker, and Carol S. Woodward. (2005) <doi:10.1145/1089014.1089020>). Furthermore, for optimization the particle swarm algorithm is used (see: Akman, Devin, Olcay Akman, and Elsa Schaefer. (2018) <doi:10.1155/2018/9160793> and Sengupta, Saptarshi, Sanchita Basak, and Richard Peters. (2018) <doi:10.3390/make1010010>). The ODE-System has to be passed as 'Rcpp'-function. The information for the parameter boundaries and states are conveyed using data.frames.
Author: Krämer Konrad [aut, cre],
Krämer Johannes [aut],
Heyer Arnd [ths],
University of Stuttgart [uvp],
Institute of Biomaterials and Biomolecular Systems at the University of Stuttgart [his]
| file AUTHORS
Maintainer: Krämer Konrad <Konrad_kraemer@yahoo.de>
Diff between paropt versions 0.1 dated 2020-07-06 and 0.2 dated 2021-05-31
paropt-0.1/paropt/NEWS |only paropt-0.1/paropt/R/Userfunctions.R |only paropt-0.1/paropt/man/ode_solving.Rd |only paropt-0.2/paropt/DESCRIPTION | 13 paropt-0.2/paropt/MD5 | 83 paropt-0.2/paropt/NAMESPACE | 4 paropt-0.2/paropt/R/RcppExports.R | 241 + paropt-0.2/paropt/build/vignette.rds |binary paropt-0.2/paropt/inst/doc/paropt.R | 98 paropt-0.2/paropt/inst/doc/paropt.Rmd | 330 +- paropt-0.2/paropt/inst/doc/paropt.html | 1422 ++++++---- paropt-0.2/paropt/inst/examples/predator.pdf |only paropt-0.2/paropt/inst/examples/prey.pdf |only paropt-0.2/paropt/inst/include/basic_functions.hpp | 6 paropt-0.2/paropt/inst/include/comparison_fct.hpp | 6 paropt-0.2/paropt/inst/include/header.hpp | 48 paropt-0.2/paropt/inst/include/modify_dataframe.hpp |only paropt-0.2/paropt/inst/include/optimizer.hpp | 8 paropt-0.2/paropt/inst/include/optimizer_Rcpp_interface.hpp |only paropt-0.2/paropt/inst/include/param_interpolation.hpp | 4 paropt-0.2/paropt/inst/include/params.hpp | 4 paropt-0.2/paropt/inst/include/paropt.h |only paropt-0.2/paropt/inst/include/paropt_RcppExports.h |only paropt-0.2/paropt/inst/include/paropt_types.h |only paropt-0.2/paropt/inst/include/solver.hpp | 17 paropt-0.2/paropt/inst/include/solver_Rcpp_interface.hpp |only paropt-0.2/paropt/inst/include/state.hpp | 6 paropt-0.2/paropt/man/optimizer.Rd | 94 paropt-0.2/paropt/man/optimizer_pointer.Rd |only paropt-0.2/paropt/man/paropt-package.Rd | 9 paropt-0.2/paropt/man/solve_ode_system.Rd |only paropt-0.2/paropt/man/solve_ode_system_pointer.Rd |only paropt-0.2/paropt/src/Makevars | 38 paropt-0.2/paropt/src/Makevars.win | 9 paropt-0.2/paropt/src/RcppExports.cpp | 74 paropt-0.2/paropt/src/basic_functions.cpp | 98 paropt-0.2/paropt/src/function_access_in_rcpp.cpp |only paropt-0.2/paropt/src/interface_fct.cpp | 192 + paropt-0.2/paropt/src/modify_dataframe.cpp |only paropt-0.2/paropt/src/ode_example.cpp | 7 paropt-0.2/paropt/src/optimizer.cpp | 34 paropt-0.2/paropt/src/optimizer_Rcpp_interface.cpp |only paropt-0.2/paropt/src/optimizer_access_in_Rcpp.cpp |only paropt-0.2/paropt/src/param_interpolation.cpp | 9 paropt-0.2/paropt/src/params.cpp | 1 paropt-0.2/paropt/src/solve_ode_system.cpp | 119 paropt-0.2/paropt/src/solver.cpp | 122 paropt-0.2/paropt/src/solver_Rcpp_interface.cpp |only paropt-0.2/paropt/src/sundials/sunlinsol/band/fsunlinsol_band.c | 10 paropt-0.2/paropt/src/sundials/sunmatrix/band/fsunmatrix_band.c | 10 paropt-0.2/paropt/src/sundials/sunnonlinsol/fixedpoint/fsunnonlinsol_fixedpoint.c | 6 paropt-0.2/paropt/vignettes/paropt.Rmd | 330 +- 52 files changed, 2279 insertions(+), 1173 deletions(-)
Title: Data Analysis Part of 'IOHprofiler'
Description: The data analysis module for the Iterative Optimization Heuristics
Profiler ('IOHprofiler'). This module provides statistical analysis methods for the
benchmark data generated by optimization heuristics, which can be visualized through a
web-based interface. The benchmark data is usually generated by the
experimentation module, called 'IOHexperimenter'. 'IOHanalyzer' also supports
the widely used 'COCO' (Comparing Continuous Optimisers) data format for benchmarking.
Author: Hao Wang [cre, aut],
Diederick Vermetten [aut],
Carola Doerr [aut],
Thomas Bäck [aut]
Maintainer: Hao Wang <h.wang@liacs.leidenuniv.nl>
Diff between IOHanalyzer versions 0.1.4 dated 2020-06-24 and 0.1.5.2 dated 2021-05-31
DESCRIPTION | 16 MD5 | 167 ++-- NAMESPACE | 26 R/DataSet.R | 36 - R/DataSetList.R | 430 ++++++++---- R/IOHanalyzer.R | 15 R/plot.R | 13 R/plotDataSetList.R | 152 +++- R/readFiles.R | 38 - R/runServer.R | 11 R/stats.R | 454 ++++++++++++ README.md | 70 + inst/shiny-server/global.R | 32 inst/shiny-server/img/raw_data.png |binary inst/shiny-server/markdown/about.md | 2 inst/shiny-server/server.R | 33 inst/shiny-server/server/ERTPlot.R | 12 inst/shiny-server/server/ERT_aggr_dim_plot.R | 6 inst/shiny-server/server/ERT_aggr_plot.R | 11 inst/shiny-server/server/ERT_summary.R | 17 inst/shiny-server/server/FCEPlot.R | 35 inst/shiny-server/server/FCESummary.R | 17 inst/shiny-server/server/FCE_aggr_plot.R | 6 inst/shiny-server/server/FV_DSCinterface.R |only inst/shiny-server/server/FV_PAR.R | 18 inst/shiny-server/server/RT_DSCinterface.R |only inst/shiny-server/server/RT_ECDF.R | 152 ++-- inst/shiny-server/server/RT_Par.R | 18 inst/shiny-server/server/Shapley_computations.R |only inst/shiny-server/server/fv_stat_tests.R | 12 inst/shiny-server/server/general_overview.R | 12 inst/shiny-server/server/settings_page.R | 23 inst/shiny-server/server/statistical_significance.R | 16 inst/shiny-server/server/tables_multi_func.R |only inst/shiny-server/server/upload.R | 304 ++++---- inst/shiny-server/ui.R | 703 +++++++++++++------- inst/shiny-server/ui/DIM_fID_panel.R | 41 - inst/shiny-server/ui/DSC_interface.R |only inst/shiny-server/ui/ERT_agg_box.R | 2 inst/shiny-server/ui/ERT_box.R | 60 + inst/shiny-server/ui/ERT_comparison_box.R | 8 inst/shiny-server/ui/Parrallel_coord_box.R | 2 inst/shiny-server/ui/fv_box.R | 19 inst/shiny-server/ui/fv_dist_box.R | 4 inst/shiny-server/ui/fv_ecdf_box.R | 4 inst/shiny-server/ui/fv_par_box.R | 8 inst/shiny-server/ui/fv_stats_box.R | 8 inst/shiny-server/ui/fv_summary_box.R | 6 inst/shiny-server/ui/mockup_ontology.R |only inst/shiny-server/ui/overview_box.R | 4 inst/shiny-server/ui/rt_dist_box.R | 6 inst/shiny-server/ui/rt_ecdf_box.R | 115 +-- inst/shiny-server/ui/rt_par_box.R | 6 inst/shiny-server/ui/rt_portfolio_box.R |only inst/shiny-server/ui/rt_summary_box.R | 8 inst/shiny-server/ui/settings.R | 8 inst/shiny-server/ui/sidebar_menu.R | 9 inst/shiny-server/ui/stats_box.R | 8 inst/shiny-server/ui/tables_multi_func_box.R |only inst/shiny-server/ui/upload_box.R | 23 inst/shiny-server/ui/variable.R | 13 inst/temp.rds |only man/Plot.Performviz.Rd |only man/Plot.RT.ECDF_Multi_Func.Rd | 2 man/SP.Rd | 3 man/c.DataSetList.Rd | 2 man/check_dsc_configured.Rd |only man/fast_RT_samples.Rd |only man/generate_data.AUC.Rd | 18 man/generate_data.ECDF.Rd | 6 man/generate_data.ECDF_raw.Rd |only man/generate_data.Single_Function.Rd | 5 man/get_ERT.Rd | 11 man/get_FV_overview.Rd | 2 man/get_FV_sample.Rd | 2 man/get_FV_summary.Rd | 2 man/get_PAR_sample.Rd | 2 man/get_PAR_summary.Rd | 2 man/get_RT_overview.Rd | 2 man/get_RT_sample.Rd | 2 man/get_RT_summary.Rd | 11 man/get_dsc_omnibus.Rd |only man/get_dsc_posthoc.Rd |only man/get_dsc_rank.Rd |only man/get_marg_contrib_ecdf.Rd |only man/get_maxRT.Rd | 2 man/get_shapley_values.Rd |only man/plot_general_data.Rd | 3 man/register_DSC.Rd |only man/runServer.Rd | 10 man/save_table.Rd |only man/scan_index_file.Rd | 3 man/set_DSC_credentials.Rd |only src/align.cc | 19 tests/testthat/test_data_generation.R | 13 95 files changed, 2286 insertions(+), 1055 deletions(-)
Title: Create Validation Tests for Automated Content Analysis
Description: Intended to create standard human-in-the-loop validity tests for typical automated content analysis such as topic modeling and dictionary-based methods. This package offers a standard workflow with functions to prepare, administer and evaluate a human-in-the-loop validity test. This package provides functions for validating topic models using word intrusion, topic intrusion (Chang et al. 2009, <https://papers.nips.cc/paper/3700-reading-tea-leaves-how-humans-interpret-topic-models>) and word set intrusion (Ying et al. Forthcoming) tests. This package also provides functions for generating gold-standard data which are useful for validating dictionary-based methods. The default settings of all generated tests match those suggested in Chang et al. (2009) and Song et al. (2020) <doi:10.1080/10584609.2020.1723752>.
Author: Chung-hong Chan [aut, cre] (<https://orcid.org/0000-0002-6232-7530>),
Marius Sältzer [aut] (<https://orcid.org/0000-0002-8604-4666>)
Maintainer: Chung-hong Chan <chainsawtiney@gmail.com>
Diff between oolong versions 0.3.11 dated 2020-11-13 and 0.4.0 dated 2021-05-31
oolong-0.3.11/oolong/data/abstracts_stm.rda |only oolong-0.3.11/oolong/man/abstracts_stm.Rd |only oolong-0.3.11/oolong/tests/testthat/test-printing.R |only oolong-0.3.11/oolong/tests/testthat/test-warplda.R |only oolong-0.4.0/oolong/DESCRIPTION | 18 oolong-0.4.0/oolong/MD5 | 110 - oolong-0.4.0/oolong/NAMESPACE | 10 oolong-0.4.0/oolong/NEWS.md | 15 oolong-0.4.0/oolong/R/oolong.R | 122 + oolong-0.4.0/oolong/R/oolong_btm.R | 2 oolong-0.4.0/oolong/R/oolong_data_misc.R | 56 oolong-0.4.0/oolong/R/oolong_formats.R | 14 oolong-0.4.0/oolong/R/oolong_gs.R | 136 - oolong-0.4.0/oolong/R/oolong_nb.R |only oolong-0.4.0/oolong/R/oolong_seededlda.R |only oolong-0.4.0/oolong/R/oolong_shiny.R |only oolong-0.4.0/oolong/R/oolong_summary.R | 76 - oolong-0.4.0/oolong/R/oolong_summary_gs.R | 2 oolong-0.4.0/oolong/R/oolong_summary_tm.R | 132 + oolong-0.4.0/oolong/R/oolong_tm.R | 277 +-- oolong-0.4.0/oolong/R/oolong_ui.R |only oolong-0.4.0/oolong/R/oolong_update.R |only oolong-0.4.0/oolong/R/oolong_warplda.R | 4 oolong-0.4.0/oolong/build/vignette.rds |binary oolong-0.4.0/oolong/data/newsgroup_nb.rda |only oolong-0.4.0/oolong/inst/app |only oolong-0.4.0/oolong/inst/doc/btm.R | 2 oolong-0.4.0/oolong/inst/doc/btm.Rmd | 2 oolong-0.4.0/oolong/inst/doc/btm.html | 152 -- oolong-0.4.0/oolong/inst/doc/deploy.R |only oolong-0.4.0/oolong/inst/doc/deploy.Rmd |only oolong-0.4.0/oolong/inst/doc/deploy.html |only oolong-0.4.0/oolong/inst/doc/overview.R | 77 - oolong-0.4.0/oolong/inst/doc/overview.Rmd | 151 +- oolong-0.4.0/oolong/inst/doc/overview.html | 735 +++++----- oolong-0.4.0/oolong/inst/extdata |only oolong-0.4.0/oolong/man/abstracts.Rd | 2 oolong-0.4.0/oolong/man/abstracts_keyatm.Rd |only oolong-0.4.0/oolong/man/check_oolong.Rd |only oolong-0.4.0/oolong/man/clone_oolong.Rd | 4 oolong-0.4.0/oolong/man/create_oolong.Rd | 135 + oolong-0.4.0/oolong/man/deploy_oolong.Rd |only oolong-0.4.0/oolong/man/export_oolong.Rd |only oolong-0.4.0/oolong/man/newsgroup_nb.Rd |only oolong-0.4.0/oolong/man/oolong.Rd | 2 oolong-0.4.0/oolong/man/print.oolong_summary.Rd | 18 oolong-0.4.0/oolong/man/revert_oolong.Rd |only oolong-0.4.0/oolong/man/summarize_oolong.Rd | 22 oolong-0.4.0/oolong/man/update_oolong.Rd |only oolong-0.4.0/oolong/tests/testdata |only oolong-0.4.0/oolong/tests/testthat/_snaps |only oolong-0.4.0/oolong/tests/testthat/test-btm.R | 11 oolong-0.4.0/oolong/tests/testthat/test-defensive_programming.R | 101 + oolong-0.4.0/oolong/tests/testthat/test-deploy.R |only oolong-0.4.0/oolong/tests/testthat/test-generate_test_content.R | 43 oolong-0.4.0/oolong/tests/testthat/test-gold-standard.R | 10 oolong-0.4.0/oolong/tests/testthat/test-keyatm.R | 12 oolong-0.4.0/oolong/tests/testthat/test-multiple_objs.R | 14 oolong-0.4.0/oolong/tests/testthat/test-nb.R |only oolong-0.4.0/oolong/tests/testthat/test-smallk.R |only oolong-0.4.0/oolong/tests/testthat/test-summarize_oolong.R | 97 - oolong-0.4.0/oolong/tests/testthat/test-update.R |only oolong-0.4.0/oolong/vignettes/btm.Rmd | 2 oolong-0.4.0/oolong/vignettes/deploy.Rmd |only oolong-0.4.0/oolong/vignettes/figures |only oolong-0.4.0/oolong/vignettes/overview.Rmd | 151 +- 66 files changed, 1666 insertions(+), 1051 deletions(-)
Title: Flexible Tool for Bias Detection, Visualization, and Mitigation
Description: Measure fairness metrics in one place for many models. Check how big is model's bias towards different races, sex, nationalities etc. Use measures such as Statistical Parity, Equal odds to detect the discrimination against unprivileged groups. Visualize the bias using heatmap, radar plot, biplot, bar chart (and more!). There are various pre-processing and post-processing bias mitigation algorithms implemented. Package also supports calculating fairness metrics for regression models. Find more details in (Wiśniewski, Biecek (2021)) <arXiv:2104.00507>.
Author: Jakub Wiśniewski [aut, cre],
Przemysław Biecek [aut] (<https://orcid.org/0000-0001-8423-1823>)
Maintainer: Jakub Wiśniewski <jakwisn@gmail.com>
Diff between fairmodels versions 1.0.1 dated 2021-04-14 and 1.1.0 dated 2021-05-31
DESCRIPTION | 12 MD5 | 65 NAMESPACE | 136 NEWS.md | 112 R/all_cutoffs.R | 1 R/fairness_check.R | 879 ++--- R/fairness_check_regression.R |only R/helper_functions.R | 619 ++- R/plot_density.R | 147 R/plot_fairness_object.R | 284 - R/plot_fairness_regression_object.R |only R/print.R | 1418 ++++---- R/regression_metrics.R |only README.md | 279 - build/vignette.rds |binary inst/doc/Advanced_tutorial.R | 388 +- inst/doc/Advanced_tutorial.html | 3781 +++-------------------- inst/doc/Basic_tutorial.R | 298 - inst/doc/Basic_tutorial.html | 3783 +++--------------------- man/all_cutoffs.Rd | 1 man/fairness_check_regression.Rd |only man/plot_fairness_regression_object.Rd |only man/print_fairness_regression_object.Rd |only man/regression_metrics.Rd |only tests/testthat.R | 9 tests/testthat/helper_objects.R | 140 tests/testthat/test_ceteris_paribus_with_plot.R | 60 tests/testthat/test_choose_metric.R | 26 tests/testthat/test_fairness_check.R | 230 - tests/testthat/test_fairness_check_regression.R |only tests/testthat/test_fairness_object.R | 292 - tests/testthat/test_fairness_radar_and_plot.R | 86 tests/testthat/test_helper_functions.R | 60 tests/testthat/test_pca_fairness_with_plot.R | 90 tests/testthat/test_performance_and_fairness.R | 52 tests/testthat/test_plot_density.R |only tests/testthat/test_plot_fairmodels.R | 62 tests/testthat/test_stack_metrics_and_plot.R | 36 38 files changed, 4262 insertions(+), 9084 deletions(-)
Title: Delineating Temporal Dataset Shifts in Electronic Health Records
Description: Functions to delineate temporal dataset shifts in Electronic Health
Records through the projection and visualization of dissimilarities
among data temporal batches. This is done through the estimation of
data statistical distributions over time and their projection in
non-parametric statistical manifolds, uncovering the patterns of the
data latent temporal variability. 'EHRtemporalVariability' is
particularly suitable for multi-modal data and categorical variables
with a high number of values, common features of biomedical data where
traditional statistical process control or time-series methods may not
be appropriate. 'EHRtemporalVariability' allows you to explore and
identify dataset shifts through visual analytics formats such as
Data Temporal heatmaps and Information Geometric Temporal (IGT) plots.
An additional 'EHRtemporalVariability' Shiny app can be used to load
and explore the package results and even to allow the use of these
functions to those users non-experienced in R coding. (Sáez et al. 2020)
<doi:10.1093/gigascience/giaa079>.
Author: Carlos Sáez [aut, cre],
Alba Gutiérrez-Sacristán [aut],
Isaac Kohane [aut],
Juan M García-Gómez [aut],
Paul Avillach [aut],
Biomedical Data Science Lab, Universitat Politècnica de València
(Spain) [cph],
Department of Biomedical Informatics, Harvard Medical School [cph]
Maintainer: Carlos Sáez <carsaesi@upv.es>
Diff between EHRtemporalVariability versions 1.1.2.1 dated 2020-10-09 and 1.1.4 dated 2021-05-31
DESCRIPTION | 9 MD5 | 29 NEWS.md | 10 R/allClasses.R | 17 R/allGenerics.R | 11 R/allMethods.R | 62 R/estimateDataTemporalMap.R | 62 README.md | 2 build/vignette.rds |binary inst/doc/EHRtemporalVariability.R | 7 inst/doc/EHRtemporalVariability.Rmd | 17 inst/doc/EHRtemporalVariability.html | 2624 +------------------------------ man/IGTProjection-class.Rd |only man/plotDataTemporalMap-methods.Rd | 16 vignettes/EHRtemporalVariability.Rmd | 17 vignettes/EHRtemporalVariabilityHelp.pdf |binary 16 files changed, 340 insertions(+), 2543 deletions(-)
More information about EHRtemporalVariability at CRAN
Permanent link
Title: Adrian Dusa's Miscellaneous
Description: Contains functions used across packages 'QCA', 'DDIwR', 'mixed' and 'venn'.
Interprets and translates, factorizes and negates SOP - Sum of Products
expressions, for both binary and multi-value crisp sets, and extracts information
(set names, set values) from those expressions. Other functions perform various
other checks if possibly numeric (even if all numbers reside in a character vector)
and coerce to numeric, or check if the numbers are whole. It also offers, among
many others, a highly flexible recoding routine.
Author: Adrian Dusa [aut, cre, cph] (<https://orcid.org/0000-0002-3525-9253>)
Maintainer: Adrian Dusa <dusa.adrian@unibuc.ro>
Diff between admisc versions 0.12 dated 2021-03-16 and 0.15 dated 2021-05-31
DESCRIPTION | 14 ++++---- MD5 | 31 ++++++++++--------- NAMESPACE | 2 + R/asNumeric.R | 5 ++- R/possibleNumeric.R | 5 ++- R/recode.R | 78 +++++++++++++++++++++++++++++-------------------- R/replaceText.R | 18 ++++++++++- R/unlockEnvironment.R |only build/partial.rdb |binary inst/ChangeLog | 9 +++++ man/admisc-internal.Rd | 3 + man/admisc.package.Rd | 4 +- man/numerics.Rd | 4 +- man/recode.Rd | 58 ++++++++++++++++++++---------------- man/replaceText.Rd | 4 +- man/tryCatchWEM.Rd | 6 +-- src |only 17 files changed, 151 insertions(+), 90 deletions(-)
Title: Hierarchical Climate Regionalization
Description: A tool for Hierarchical Climate Regionalization applicable to any correlation-based clustering.
It adds several features and a new clustering method (called, 'regional' linkage) to hierarchical
clustering in R ('hclust' function in 'stats' library): data regridding, coarsening spatial resolution,
geographic masking, contiguity-constrained clustering, data filtering by mean and/or variance
thresholds, data preprocessing (detrending, standardization, and PCA), faster correlation function
with preliminary big data support, different clustering methods, hybrid hierarchical clustering,
multivariate clustering (MVC), cluster validation, visualization of regionalization results, and
exporting region map and mean timeseries into NetCDF-4 file.
The technical details are described in Badr et al. (2015) <doi:10.1007/s12145-015-0221-7>.
Author: Hamada S. Badr [aut, cre] (<https://orcid.org/0000-0002-9808-2344>),
Benjamin F. Zaitchik [aut] (<https://orcid.org/0000-0002-0698-0658>),
Amin K. Dezfuli [aut] (<https://orcid.org/0000-0003-3274-8542>)
Maintainer: Hamada S. Badr <badr@jhu.edu>
Diff between HiClimR versions 2.1.9 dated 2021-04-02 and 2.2.0 dated 2021-05-31
DESCRIPTION | 6 +++--- MD5 | 16 ++++++++-------- NEWS.md | 4 ++++ README.md | 10 +++++----- build/partial.rdb |binary build/vignette.rds |binary inst/doc/BugReports.Rmd | 20 ++++++++++++-------- inst/doc/BugReports.html | 20 ++++++++++++++------ vignettes/BugReports.Rmd | 20 ++++++++++++-------- 9 files changed, 58 insertions(+), 38 deletions(-)
Title: Bindings for Bayesian TidyModels
Description: Fit Bayesian models using 'brms'/'Stan' with 'parsnip'/'tidymodels'
via 'bayesian' <doi:10.5281/zenodo.4882780>. 'tidymodels' is a collection of
packages for machine learning; see Kuhn and Wickham (2020) <https://www.tidymodels.org>).
The technical details of 'brms' and 'Stan' are described in Bürkner (2017)
<doi:10.18637/jss.v080.i01>, Bürkner (2018) <doi:10.32614/RJ-2018-017>,
and Carpenter et al. (2017) <doi:10.18637/jss.v076.i01>.
Author: Hamada S. Badr [aut, cre] (<https://orcid.org/0000-0002-9808-2344>),
Paul-Christian Bürkner [aut]
Maintainer: Hamada S. Badr <badr@jhu.edu>
Diff between bayesian versions 0.0.4 dated 2021-05-18 and 0.0.5 dated 2021-05-31
DESCRIPTION | 12 - MD5 | 35 ++--- NAMESPACE | 5 NEWS.md | 14 ++ R/bayesian.R | 58 ++++++--- R/bayesian_init.R | 4 R/bayesian_make.R | 251 +++++++++++++++++++++-------------------- README.md | 17 +- inst/CITATION | 4 inst/WORDLIST | 4 inst/doc/BugReports.html | 4 inst/doc/GetStarted.R | 36 ++++- inst/doc/GetStarted.Rmd | 57 ++++++--- inst/doc/GetStarted.html | 74 +++++------- man/bayesian.Rd | 2 man/figures |only tests/testthat.R | 2 tests/testthat/test-bayesian.R | 12 - vignettes/GetStarted.Rmd | 57 ++++++--- 19 files changed, 384 insertions(+), 264 deletions(-)
Title: Efficient Constrained Based Modelling
Description: This Systems Biology Package (Gelius-Dietrich et. al. (2012) <doi:10.1186/1752-0509-7-125>) implements algorithms for constraint based analyses of metabolic networks, e.g. flux-balance analysis (FBA), minimization of metabolic adjustment (MOMA), regulatory on/off minimization (ROOM), robustness analysis and flux variability analysis. The package is easily extendable for additional algorithms. Most of the current LP/MILP solvers are supported via additional packages.
Author: Mayo Roettger [cre],
Gabriel Gelius-Dietrich [aut],
C. Jonathan Fritzemeier [ctb],
Rajen Piernikarczyk [ctb],
Marc Andre Daxer [ctb],
Benjamin Braasch [ctb],
Abdelmoneim Desouki [ctb],
Martin J. Lercher [ctb]
Maintainer: Mayo Roettger <mayo.roettger@hhu.de>
Diff between sybil versions 2.1.5 dated 2019-03-07 and 2.2.0 dated 2021-05-31
DESCRIPTION | 10 +++--- MD5 | 30 ++++++++++---------- R/modelorg2ExPA.R | 13 ++------ R/modelorg2tsv.R | 1 R/optObj_clpAPIClass.R | 63 ++++++++++++++++++++++++++++++------------- R/optObj_cplexAPIClass.R | 4 ++ R/parseBoolean.R | 13 ++++++-- R/promptSysBiolAlg.R | 8 +---- build/vignette.rds |binary inst/CITATION | 2 - inst/NEWS.Rd | 20 ++++++++++++- inst/doc/sybil.R | 1 inst/doc/sybil.pdf |binary man/getSolverParm-methods.Rd | 10 ++++-- man/setSolverParm-methods.Rd | 8 +++-- man/upgradeModelorg.Rd | 3 +- 16 files changed, 117 insertions(+), 69 deletions(-)
Title: Miscellaneous Functions in C++
Description: Provides utility functions that are simply, frequently used,
but may require higher performance that what can be obtained from base R.
Incidentally provides support for 'reverse geocoding', such as matching a point
with its nearest neighbour in another array. Used as a complement to package
'hutils' by sacrificing compilation or installation time for higher running
speeds. The name is a portmanteau of the author and 'Rcpp'.
Author: Hugh Parsonage [aut, cre],
Simon Urbanek [ctb] (fastmatch components)
Maintainer: Hugh Parsonage <hugh.parsonage@gmail.com>
Diff between hutilscpp versions 0.5.2 dated 2020-10-20 and 0.7.1 dated 2021-05-31
hutilscpp-0.5.2/hutilscpp/R/RcppExports.R |only hutilscpp-0.5.2/hutilscpp/R/pmax_pure_C.R |only hutilscpp-0.5.2/hutilscpp/R/which2_yr.R |only hutilscpp-0.5.2/hutilscpp/src/AnyCharMatch.cpp |only hutilscpp-0.5.2/hutilscpp/src/Implies.cpp |only hutilscpp-0.5.2/hutilscpp/src/RcppExports.cpp |only hutilscpp-0.5.2/hutilscpp/src/allocate.cpp |only hutilscpp-0.5.2/hutilscpp/src/anyOutside.cpp |only hutilscpp-0.5.2/hutilscpp/src/cpphutils.h |only hutilscpp-0.5.2/hutilscpp/src/do_and3s.cpp |only hutilscpp-0.5.2/hutilscpp/src/do_cumsum_reset.cpp |only hutilscpp-0.5.2/hutilscpp/src/do_divisible.cpp |only hutilscpp-0.5.2/hutilscpp/src/do_even.cpp |only hutilscpp-0.5.2/hutilscpp/src/do_logical3s.cpp |only hutilscpp-0.5.2/hutilscpp/src/do_op2M.cpp |only hutilscpp-0.5.2/hutilscpp/src/do_or3s.cpp |only hutilscpp-0.5.2/hutilscpp/src/do_range.cpp |only hutilscpp-0.5.2/hutilscpp/src/do_which_first.cpp |only hutilscpp-0.5.2/hutilscpp/src/do_which_isnt_integerish.cpp |only hutilscpp-0.5.2/hutilscpp/src/do_which_last.cpp |only hutilscpp-0.5.2/hutilscpp/src/do_whichs.cpp |only hutilscpp-0.5.2/hutilscpp/src/do_xor2.cpp |only hutilscpp-0.5.2/hutilscpp/src/haversineDistance.cpp |only hutilscpp-0.5.2/hutilscpp/src/hutilsc.h |only hutilscpp-0.5.2/hutilscpp/src/is_constant_x.cpp |only hutilscpp-0.5.2/hutilscpp/src/is_safe2int.cpp |only hutilscpp-0.5.2/hutilscpp/src/is_sorted.cpp |only hutilscpp-0.5.2/hutilscpp/src/logical3.cpp |only hutilscpp-0.5.2/hutilscpp/src/omp_diagnose.cpp |only hutilscpp-0.5.2/hutilscpp/src/pminmax.cpp |only hutilscpp-0.5.2/hutilscpp/src/ppmax.c |only hutilscpp-0.5.2/hutilscpp/src/squish.cpp |only hutilscpp-0.5.2/hutilscpp/src/sum_isna.cpp |only hutilscpp-0.5.2/hutilscpp/src/summary3.cpp |only hutilscpp-0.5.2/hutilscpp/src/tests.cpp |only hutilscpp-0.5.2/hutilscpp/src/texParse.cpp |only hutilscpp-0.5.2/hutilscpp/src/which_true_onwards.cpp |only hutilscpp-0.5.2/hutilscpp/tests/testthat/test-do_which_first.R |only hutilscpp-0.5.2/hutilscpp/tests/testthat/test-do_which_in.R |only hutilscpp-0.5.2/hutilscpp/tests/testthat/test-internals.R |only hutilscpp-0.5.2/hutilscpp/tests/testthat/test-pmax_pure_c.R |only hutilscpp-0.5.2/hutilscpp/tests/testthat/test-temp3.R |only hutilscpp-0.5.2/hutilscpp/tests/testthat/test-which2_yr.R |only hutilscpp-0.7.1/hutilscpp/DESCRIPTION | 21 hutilscpp-0.7.1/hutilscpp/MD5 | 248 hutilscpp-0.7.1/hutilscpp/NAMESPACE | 9 hutilscpp-0.7.1/hutilscpp/NEWS.md | 13 hutilscpp-0.7.1/hutilscpp/R/AnyCharMatch.R |only hutilscpp-0.7.1/hutilscpp/R/Implies.R |only hutilscpp-0.7.1/hutilscpp/R/allocate.R |only hutilscpp-0.7.1/hutilscpp/R/anyOutside.R | 42 hutilscpp-0.7.1/hutilscpp/R/are_even.R | 146 hutilscpp-0.7.1/hutilscpp/R/as_integer_if_safe.R | 3 hutilscpp-0.7.1/hutilscpp/R/count_logical.R | 7 hutilscpp-0.7.1/hutilscpp/R/cumsum_reset.R | 36 hutilscpp-0.7.1/hutilscpp/R/decompose_expr.R | 17 hutilscpp-0.7.1/hutilscpp/R/divisible.R | 19 hutilscpp-0.7.1/hutilscpp/R/ensure_integer.R |only hutilscpp-0.7.1/hutilscpp/R/extractMandatory.R |only hutilscpp-0.7.1/hutilscpp/R/fmatchp.R |only hutilscpp-0.7.1/hutilscpp/R/haversineDistance.R |only hutilscpp-0.7.1/hutilscpp/R/hutilscpp-package.R | 1 hutilscpp-0.7.1/hutilscpp/R/is_altrep.R |only hutilscpp-0.7.1/hutilscpp/R/is_constant.R | 24 hutilscpp-0.7.1/hutilscpp/R/is_sorted.R | 49 hutilscpp-0.7.1/hutilscpp/R/logical3.R | 9 hutilscpp-0.7.1/hutilscpp/R/logical3s.R | 127 hutilscpp-0.7.1/hutilscpp/R/match_nrst_haversine.R | 386 - hutilscpp-0.7.1/hutilscpp/R/minmax.R |only hutilscpp-0.7.1/hutilscpp/R/op2M.R |only hutilscpp-0.7.1/hutilscpp/R/packageName.R |only hutilscpp-0.7.1/hutilscpp/R/pcg_hash.R |only hutilscpp-0.7.1/hutilscpp/R/pmaxC.R | 203 hutilscpp-0.7.1/hutilscpp/R/range_rcpp.R | 32 hutilscpp-0.7.1/hutilscpp/R/seqN_by.R | 3 hutilscpp-0.7.1/hutilscpp/R/squish.R | 5 hutilscpp-0.7.1/hutilscpp/R/sum3.R | 12 hutilscpp-0.7.1/hutilscpp/R/sum_isna.R | 24 hutilscpp-0.7.1/hutilscpp/R/utils-omp.R | 24 hutilscpp-0.7.1/hutilscpp/R/utils.R | 31 hutilscpp-0.7.1/hutilscpp/R/vname.R |only hutilscpp-0.7.1/hutilscpp/R/which3.R | 4 hutilscpp-0.7.1/hutilscpp/R/which_NA.R |only hutilscpp-0.7.1/hutilscpp/R/which_first.R | 1067 ++-- hutilscpp-0.7.1/hutilscpp/R/which_firstNA.R | 54 hutilscpp-0.7.1/hutilscpp/R/which_isnt_integerish.R | 2 hutilscpp-0.7.1/hutilscpp/R/which_true_onwards.R | 6 hutilscpp-0.7.1/hutilscpp/R/whichs.R | 11 hutilscpp-0.7.1/hutilscpp/R/xor2.R | 2 hutilscpp-0.7.1/hutilscpp/R/zzz.R | 3 hutilscpp-0.7.1/hutilscpp/inst |only hutilscpp-0.7.1/hutilscpp/man/Implies.Rd |only hutilscpp-0.7.1/hutilscpp/man/are_even.Rd | 2 hutilscpp-0.7.1/hutilscpp/man/cumsum_reset.Rd | 60 hutilscpp-0.7.1/hutilscpp/man/divisible.Rd | 10 hutilscpp-0.7.1/hutilscpp/man/fmatchp.Rd |only hutilscpp-0.7.1/hutilscpp/man/hutilscpp-package.Rd | 5 hutilscpp-0.7.1/hutilscpp/man/is_sorted.Rd |only hutilscpp-0.7.1/hutilscpp/man/match_nrst_haversine.Rd | 2 hutilscpp-0.7.1/hutilscpp/man/minmax.Rd |only hutilscpp-0.7.1/hutilscpp/man/pmaxC.Rd | 22 hutilscpp-0.7.1/hutilscpp/man/which_firstNA.Rd | 2 hutilscpp-0.7.1/hutilscpp/src/AnyCharMatch.c |only hutilscpp-0.7.1/hutilscpp/src/CImplies.c |only hutilscpp-0.7.1/hutilscpp/src/CSquish.c |only hutilscpp-0.7.1/hutilscpp/src/C_op2M.c |only hutilscpp-0.7.1/hutilscpp/src/Cand3s.c |only hutilscpp-0.7.1/hutilscpp/src/Ccount_logical.c |only hutilscpp-0.7.1/hutilscpp/src/Ccumsum_reset.c |only hutilscpp-0.7.1/hutilscpp/src/Cdivisible.c |only hutilscpp-0.7.1/hutilscpp/src/Cis_constant.c |only hutilscpp-0.7.1/hutilscpp/src/Cis_sorted.c |only hutilscpp-0.7.1/hutilscpp/src/Cor3s.c |only hutilscpp-0.7.1/hutilscpp/src/Cpar_in.c |only hutilscpp-0.7.1/hutilscpp/src/Cpminmax.c |only hutilscpp-0.7.1/hutilscpp/src/Crange.c |only hutilscpp-0.7.1/hutilscpp/src/Csum_isna.c |only hutilscpp-0.7.1/hutilscpp/src/CtexParse.c |only hutilscpp-0.7.1/hutilscpp/src/Cwhich_16.c |only hutilscpp-0.7.1/hutilscpp/src/Cwhich_even.c |only hutilscpp-0.7.1/hutilscpp/src/Cwhich_first.c |only hutilscpp-0.7.1/hutilscpp/src/Cwhich_isna.c |only hutilscpp-0.7.1/hutilscpp/src/Cwhich_last.c |only hutilscpp-0.7.1/hutilscpp/src/Cwhich_true_onwards.c |only hutilscpp-0.7.1/hutilscpp/src/Makevars | 5 hutilscpp-0.7.1/hutilscpp/src/ScalarLength.c |only hutilscpp-0.7.1/hutilscpp/src/allocate.c |only hutilscpp-0.7.1/hutilscpp/src/altrep.c |only hutilscpp-0.7.1/hutilscpp/src/anyOutside.c |only hutilscpp-0.7.1/hutilscpp/src/asInteger2.c |only hutilscpp-0.7.1/hutilscpp/src/character.c |only hutilscpp-0.7.1/hutilscpp/src/common.h |only hutilscpp-0.7.1/hutilscpp/src/dbl2int.c |only hutilscpp-0.7.1/hutilscpp/src/fastmatch_fastmatch.c |only hutilscpp-0.7.1/hutilscpp/src/haversineDistance.c |only hutilscpp-0.7.1/hutilscpp/src/hutilscpp.h |only hutilscpp-0.7.1/hutilscpp/src/init.c |only hutilscpp-0.7.1/hutilscpp/src/is_true.c |only hutilscpp-0.7.1/hutilscpp/src/logical3.c |only hutilscpp-0.7.1/hutilscpp/src/minmax.c |only hutilscpp-0.7.1/hutilscpp/src/omp_diagnose.c |only hutilscpp-0.7.1/hutilscpp/src/single_ox_x1_x2.c |only hutilscpp-0.7.1/hutilscpp/src/summary3.c |only hutilscpp-0.7.1/hutilscpp/tests/testthat/test-AnyCharMatch.R | 4 hutilscpp-0.7.1/hutilscpp/tests/testthat/test-allocate.R | 6 hutilscpp-0.7.1/hutilscpp/tests/testthat/test-and3.R | 56 hutilscpp-0.7.1/hutilscpp/tests/testthat/test-and3s-coverage.R | 14 hutilscpp-0.7.1/hutilscpp/tests/testthat/test-anyOutside.R | 7 hutilscpp-0.7.1/hutilscpp/tests/testthat/test-are_even.R | 5 hutilscpp-0.7.1/hutilscpp/tests/testthat/test-as_integer_if_safe.R | 16 hutilscpp-0.7.1/hutilscpp/tests/testthat/test-check_omp.R | 16 hutilscpp-0.7.1/hutilscpp/tests/testthat/test-cpp-haversine.R | 23 hutilscpp-0.7.1/hutilscpp/tests/testthat/test-divisible.R | 1 hutilscpp-0.7.1/hutilscpp/tests/testthat/test-do_duplicated_sorted.R | 4 hutilscpp-0.7.1/hutilscpp/tests/testthat/test-fmatch.R |only hutilscpp-0.7.1/hutilscpp/tests/testthat/test-implies.R | 2 hutilscpp-0.7.1/hutilscpp/tests/testthat/test-is_constant.R | 48 hutilscpp-0.7.1/hutilscpp/tests/testthat/test-is_sorted.R | 70 hutilscpp-0.7.1/hutilscpp/tests/testthat/test-pmax0.R | 19 hutilscpp-0.7.1/hutilscpp/tests/testthat/test-pmaxC.R | 15 hutilscpp-0.7.1/hutilscpp/tests/testthat/test-pmaxV.R | 9 hutilscpp-0.7.1/hutilscpp/tests/testthat/test-pmax_friends.R | 5 hutilscpp-0.7.1/hutilscpp/tests/testthat/test-pmin0.R | 19 hutilscpp-0.7.1/hutilscpp/tests/testthat/test-pminC.R | 12 hutilscpp-0.7.1/hutilscpp/tests/testthat/test-pminV.R | 2 hutilscpp-0.7.1/hutilscpp/tests/testthat/test-range-cpp.R | 15 hutilscpp-0.7.1/hutilscpp/tests/testthat/test-sum_and3s.R | 29 hutilscpp-0.7.1/hutilscpp/tests/testthat/test-sum_isna.R | 11 hutilscpp-0.7.1/hutilscpp/tests/testthat/test-tex.R | 22 hutilscpp-0.7.1/hutilscpp/tests/testthat/test-texParse-internals.R | 47 hutilscpp-0.7.1/hutilscpp/tests/testthat/test-which3.R | 2 hutilscpp-0.7.1/hutilscpp/tests/testthat/test-which_NA.R |only hutilscpp-0.7.1/hutilscpp/tests/testthat/test-which_first.R | 2576 ++++------ hutilscpp-0.7.1/hutilscpp/tests/testthat/test-which_last.R | 1412 ++--- hutilscpp-0.7.1/hutilscpp/tests/testthat/test-whichs.R | 2 hutilscpp-0.7.1/hutilscpp/tests/testthat/test_ensure_integer.R |only hutilscpp-0.7.1/hutilscpp/tests/testthat/test_minmax.R |only hutilscpp-0.7.1/hutilscpp/tests/testthat/test_op2M.R |only hutilscpp-0.7.1/hutilscpp/tests/testthat/test_string_equals.R |only 179 files changed, 3915 insertions(+), 3302 deletions(-)
Title: IRT Equating Methods
Description: Computation of direct, chain and average (bisector) equating coefficients with
standard errors using Item Response Theory (IRT) methods for dichotomous items
(Battauz (2013) <doi:10.1007/s11336-012-9316-y>,
Battauz (2015) <doi:10.18637/jss.v068.i07>).
Test scoring can be performed by true score equating and observed score equating methods.
DIF detection can be performed using a Wald-type test
(Battauz (2018) <doi:10.1007/s10260-018-00442-w>).
Author: Michela Battauz
Maintainer: Michela Battauz <michela.battauz@uniud.it>
Diff between equateIRT versions 2.1.0 dated 2018-10-02 and 2.2.0 dated 2021-05-31
DESCRIPTION | 6 MD5 | 20 NAMESPACE | 4 R/functions.r | 425 +++++---- build/vignette.rds |binary inst/NEWS | 4 inst/doc/equateIRT_paper.pdf |binary inst/doc/equateIRT_tutorial.R | 42 inst/doc/equateIRT_tutorial.html | 1732 +++++++++++++++++++++++++++++++++++---- man/equateIRT-package.Rd | 4 man/id.test.Rd |only man/sd.test.Rd |only 12 files changed, 1900 insertions(+), 337 deletions(-)
Title: Query 'R' Versions, Including 'r-release' and 'r-oldrel'
Description: Query the main 'R' 'SVN' repository to find the
versions 'r-release' and 'r-oldrel' refer to, and also all previous
'R' versions and their release dates.
Author: Gábor Csárdi [aut, cre],
Jeroen Ooms [ctb],
R Consortium [fnd]
Maintainer: Gábor Csárdi <csardi.gabor@gmail.com>
Diff between rversions versions 2.1.0 dated 2021-05-24 and 2.1.1 dated 2021-05-31
rversions-2.1.0/rversions/inst |only rversions-2.1.1/rversions/DESCRIPTION | 8 ++--- rversions-2.1.1/rversions/MD5 | 30 ++++++++++----------- rversions-2.1.1/rversions/NEWS.md | 5 ++- rversions-2.1.1/rversions/R/macos.R | 2 - rversions-2.1.1/rversions/R/rversions.R | 6 ++-- rversions-2.1.1/rversions/R/tarball.R | 2 - rversions-2.1.1/rversions/R/utils.R |only rversions-2.1.1/rversions/R/win.R | 2 - rversions-2.1.1/rversions/README.md |only rversions-2.1.1/rversions/man/r_oldrel.Rd | 2 + rversions-2.1.1/rversions/man/r_release.Rd | 2 + rversions-2.1.1/rversions/man/r_release_macos.Rd | 2 + rversions-2.1.1/rversions/man/r_release_tarball.Rd | 2 + rversions-2.1.1/rversions/man/r_release_win.Rd | 2 + rversions-2.1.1/rversions/man/r_versions.Rd | 2 + rversions-2.1.1/rversions/tests/testthat.R | 2 - 17 files changed, 42 insertions(+), 27 deletions(-)
Title: Wrapper for the 'OSRM' API
Description: Wrapper around the 'Open Source Routing Machine (OSRM)'
API <http://project-osrm.org/>. 'osrmr' works with API versions
4 and 5 and can handle servers that run locally as well as the
'OSRM' webserver.
Author: Adrian Staempfli, Christoph Strauss
Maintainer: Adrian Staempfli <adrian.staempfli@ost.ch>
Diff between osrmr versions 0.1.35 dated 2019-01-14 and 0.1.36 dated 2021-05-31
DESCRIPTION | 12 MD5 | 58 +-- NAMESPACE | 14 NEWS.md | 40 +- R/data.R | 30 - R/decoder.R | 156 ++++---- R/nearest.R | 206 +++++------ R/server.R | 236 ++++++------ R/viaroute.R | 312 ++++++++-------- README.md | 114 +++--- build/vignette.rds |binary inst/doc/osrmr.R | 116 +++--- inst/doc/osrmr.Rmd | 312 ++++++++-------- inst/doc/osrmr.html | 625 ++++++++++++++++++++++++---------- man/decode_geom.Rd | 72 +-- man/encoded_string_api_4.Rd | 42 +- man/encoded_string_api_5.Rd | 42 +- man/make_request.Rd | 48 +- man/nearest.Rd | 86 ++-- man/nearest_api_v4.Rd | 62 +-- man/nearest_api_v5.Rd | 62 +-- man/quit_server.Rd | 34 - man/run_server.Rd | 72 +-- man/server_address.Rd | 54 +- man/viaroute.Rd | 124 +++--- man/viaroute_api_v4.Rd | 78 ++-- man/viaroute_api_v5.Rd | 86 ++-- tests/testthat/helper-data.R | 8 tests/testthat/test-basic_functions.R | 120 +++--- vignettes/osrmr.Rmd | 312 ++++++++-------- 30 files changed, 1908 insertions(+), 1625 deletions(-)
Title: 'Opal' Data Repository Client and 'DataSHIELD' Utils
Description: Data integration Web application for biobanks by 'OBiBa'. 'Opal' is
the core database application for biobanks. Participant data, once
collected from any data source, must be integrated and stored in a central
data repository under a uniform model. 'Opal' is such a central repository.
It can import, process, validate, query, analyze, report, and export data.
'Opal' is typically used in a research center to analyze the data acquired at
assessment centres. Its ultimate purpose is to achieve seamless
data-sharing among biobanks. This 'Opal' client allows to interact with 'Opal'
web services and to perform operations on the R server side. 'DataSHIELD'
administration tools are also provided.
Author: Yannick Marcon [aut, cre] (<https://orcid.org/0000-0003-0138-2023>),
Amadou Gaye [ctb] (<https://orcid.org/0000-0002-1180-2792>),
OBiBa group [cph]
Maintainer: Yannick Marcon <yannick.marcon@obiba.org>
Diff between opalr versions 2.1.0 dated 2021-04-29 and 2.1.1 dated 2021-05-31
DESCRIPTION | 6 +-- MD5 | 22 +++++++------- R/opal.R | 18 +++++++++-- R/opal.file.R | 68 ++++++++++++++++++++++++++++++++++---------- R/opal.sql.R | 2 - build/vignette.rds |binary inst/doc/opal-files.html | 4 +- inst/doc/opal-projects.html | 4 +- inst/doc/opal-rsession.html | 4 +- man/opal.get.Rd | 3 + man/opal.post.Rd | 3 + man/opal.sql.Rd | 2 - 12 files changed, 95 insertions(+), 41 deletions(-)
Title: Multivariate Outlier Detection in Contingency Tables
Description: Outlier detection in, possibly high-dimensional, categorical data following
Mads Lindskou et al. (2019) <doi:10.1111/sjos.12407>.
Author: Mads Lindskou [aut, cre]
Maintainer: Mads Lindskou <mads@math.aau.dk>
Diff between molic versions 2.0.1 dated 2020-06-16 and 2.0.2 dated 2021-05-31
molic-2.0.1/molic/man/to_single_chars.Rd |only molic-2.0.2/molic/DESCRIPTION | 8 molic-2.0.2/molic/MD5 | 38 - molic-2.0.2/molic/NAMESPACE | 2 molic-2.0.2/molic/NEWS.md | 4 molic-2.0.2/molic/R/api_fit_outlier.R | 39 + molic-2.0.2/molic/R/data.R | 6 molic-2.0.2/molic/R/helper_misc.R | 24 - molic-2.0.2/molic/build/vignette.rds |binary molic-2.0.2/molic/inst/doc/dermatitis.html | 361 ++++++++++++++--- molic-2.0.2/molic/inst/doc/genetic_example.R | 2 molic-2.0.2/molic/inst/doc/genetic_example.Rmd | 2 molic-2.0.2/molic/inst/doc/genetic_example.html | 489 +++++++++++++++++------- molic-2.0.2/molic/inst/doc/outlier_intro.html | 236 ++++++++++- molic-2.0.2/molic/man/fit_mixed_outlier.Rd | 4 molic-2.0.2/molic/man/fit_multiple_models.Rd | 18 molic-2.0.2/molic/man/fit_outlier.Rd | 2 molic-2.0.2/molic/man/tgp_dat.Rd | 2 molic-2.0.2/molic/man/tgp_haps.Rd | 2 molic-2.0.2/molic/man/to_chars.Rd |only molic-2.0.2/molic/vignettes/genetic_example.Rmd | 2 21 files changed, 939 insertions(+), 302 deletions(-)
Title: Gaussian Processes for Pareto Front Estimation and Optimization
Description: Gaussian process regression models, a.k.a. Kriging models, are
applied to global multi-objective optimization of black-box functions.
Multi-objective Expected Improvement and Step-wise Uncertainty Reduction
sequential infill criteria are available. A quantification of uncertainty
on Pareto fronts is provided using conditional simulations.
Author: Mickael Binois, Victor Picheny
Maintainer: Mickael Binois <mickael.binois@inria.fr>
Diff between GPareto versions 1.1.4.1 dated 2020-04-01 and 1.1.6 dated 2021-05-31
DESCRIPTION | 14 - MD5 | 65 ++++---- NAMESPACE | 1 NEWS | 31 ++++ R/GPareto-package.R | 6 R/ParetoSetDensity.R | 2 R/SAA_MEI.R | 87 +++++++---- R/checkPredict.R | 4 R/crit_EHI.R | 248 ++++++++++++++++++++++++--------- R/crit_EMI.R | 2 R/crit_optimizer.R | 5 R/easyGParetoptim.R | 2 R/fastfun.R | 2 R/integration_design_optim.R | 2 R/plotGPareto.R | 6 R/plotSymDevFun.R | 4 R/plotSymDifRNP.R | 2 R/plot_uncertainty.R | 4 R/predictkms.R | 23 +-- build/vignette.rds |binary inst/doc/GPareto_vignette.R | 33 ++-- inst/doc/GPareto_vignette.Rnw | 296 ++++++++++++++++++++++------------------ inst/doc/GPareto_vignette.pdf |binary man/GPareto-package.Rd | 6 man/ParetoSetDensity.Rd | 2 man/crit_optimizer.Rd | 4 man/crit_qEHI.Rd |only man/fastfun-class.Rd | 2 man/integration_design_optim.Rd | 2 man/plotGPareto.Rd | 10 - man/plotSymDifRNP.Rd | 2 man/plot_uncertainty.Rd | 2 man/predict_kms.Rd | 6 vignettes/GPareto_vignette.Rnw | 296 ++++++++++++++++++++++------------------ 34 files changed, 714 insertions(+), 457 deletions(-)
Title: A Toolbox for Geometric Data Analysis and More
Description: Contains functions for 'specific' Multiple Correspondence Analysis,
Class Specific Analysis, Multiple Factor Analysis, 'standardized' MCA, computing and plotting structuring factors and concentration ellipses,
inductive tests and others tools for Geometric Data Analysis (Le Roux & Rouanet (2005) <doi:10.1007/1-4020-2236-0>). It also provides functions
for the translation of logit models coefficients into percentages (Deauvieau (2010) <doi:10.1177/0759106309352586>), weighted contingency tables, an association
measure for contingency tables ("Percentages of Maximum Deviation from Independence", aka PEM, see Cibois (1993) <doi:10.1177/075910639304000103>) and some tools to measure
and plot bivariate associations between variables
(phi, Cramér V, correlation coefficient, eta-squared...).
Author: Nicolas Robette
Maintainer: Nicolas Robette <nicolas.robette@uvsq.fr>
Diff between GDAtools versions 1.6 dated 2021-03-28 and 1.7 dated 2021-05-31
GDAtools-1.6/GDAtools/R/dimdesc.MCA.R |only GDAtools-1.6/GDAtools/R/dimvtest.R |only GDAtools-1.6/GDAtools/data/Music.rda |only GDAtools-1.6/GDAtools/data/Taste.rda |only GDAtools-1.6/GDAtools/man/dimdesc.MCA.Rd |only GDAtools-1.6/GDAtools/man/dimvtest.Rd |only GDAtools-1.7/GDAtools/DESCRIPTION | 16 +- GDAtools-1.7/GDAtools/MD5 | 148 +++++++++++++++---------- GDAtools-1.7/GDAtools/NAMESPACE | 9 - GDAtools-1.7/GDAtools/NEWS.md | 106 +++++++++++++++-- GDAtools-1.7/GDAtools/R/assoc.catcont.R | 4 GDAtools-1.7/GDAtools/R/assoc.twocat.R | 13 +- GDAtools-1.7/GDAtools/R/assoc.twocont.R | 2 GDAtools-1.7/GDAtools/R/assoc.yx.R | 12 +- GDAtools-1.7/GDAtools/R/catdesc.R | 124 +++++++++++--------- GDAtools-1.7/GDAtools/R/conc.ellipse.R | 6 - GDAtools-1.7/GDAtools/R/condesc.R | 48 +++++--- GDAtools-1.7/GDAtools/R/csMCA.R | 1 GDAtools-1.7/GDAtools/R/darma.R | 34 ++--- GDAtools-1.7/GDAtools/R/dimcontrib.R | 8 + GDAtools-1.7/GDAtools/R/dimdescr.R |only GDAtools-1.7/GDAtools/R/dimeta2.R | 16 +- GDAtools-1.7/GDAtools/R/dimtypicality.R |only GDAtools-1.7/GDAtools/R/flip.mca.R |only GDAtools-1.7/GDAtools/R/ggadd_attractions.R |only GDAtools-1.7/GDAtools/R/ggadd_chulls.R |only GDAtools-1.7/GDAtools/R/ggadd_corr.R |only GDAtools-1.7/GDAtools/R/ggadd_density.R |only GDAtools-1.7/GDAtools/R/ggadd_ellipses.R | 22 ++- GDAtools-1.7/GDAtools/R/ggadd_kellipses.R |only GDAtools-1.7/GDAtools/R/ggadd_supind.R |only GDAtools-1.7/GDAtools/R/ggadd_supvar.R | 2 GDAtools-1.7/GDAtools/R/ggassoc_boxplot.R |only GDAtools-1.7/GDAtools/R/ggassoc_crosstab.R |only GDAtools-1.7/GDAtools/R/ggassoc_phiplot.R |only GDAtools-1.7/GDAtools/R/ggassoc_scatter.R |only GDAtools-1.7/GDAtools/R/ggcloud_indiv.R | 45 +++++-- GDAtools-1.7/GDAtools/R/ggcloud_variables.R | 119 +++++++++++++++----- GDAtools-1.7/GDAtools/R/homog.test.R | 22 ++- GDAtools-1.7/GDAtools/R/indsup.R | 14 +- GDAtools-1.7/GDAtools/R/modif.rate.R | 29 +++- GDAtools-1.7/GDAtools/R/multiMCA.R | 2 GDAtools-1.7/GDAtools/R/speMCA.R | 1 GDAtools-1.7/GDAtools/R/translate.logit.R | 2 GDAtools-1.7/GDAtools/R/utils.R |only GDAtools-1.7/GDAtools/R/varsup.R | 128 +++++++++++---------- GDAtools-1.7/GDAtools/README.md | 4 GDAtools-1.7/GDAtools/build |only GDAtools-1.7/GDAtools/data/Movies.RData |only GDAtools-1.7/GDAtools/data/Music.RData |only GDAtools-1.7/GDAtools/data/Taste.RData |only GDAtools-1.7/GDAtools/inst |only GDAtools-1.7/GDAtools/man/Movies.Rd |only GDAtools-1.7/GDAtools/man/Taste.Rd | 3 GDAtools-1.7/GDAtools/man/assoc.catcont.Rd | 12 +- GDAtools-1.7/GDAtools/man/assoc.twocat.Rd | 7 - GDAtools-1.7/GDAtools/man/assoc.twocont.Rd | 7 - GDAtools-1.7/GDAtools/man/assoc.yx.Rd | 9 - GDAtools-1.7/GDAtools/man/catdesc.Rd | 20 ++- GDAtools-1.7/GDAtools/man/conc.ellipse.Rd | 13 +- GDAtools-1.7/GDAtools/man/condesc.Rd | 18 +-- GDAtools-1.7/GDAtools/man/contrib.Rd | 2 GDAtools-1.7/GDAtools/man/csMCA.Rd | 2 GDAtools-1.7/GDAtools/man/darma.Rd | 7 - GDAtools-1.7/GDAtools/man/dimcontrib.Rd | 4 GDAtools-1.7/GDAtools/man/dimdescr.Rd |only GDAtools-1.7/GDAtools/man/dimeta2.Rd | 15 +- GDAtools-1.7/GDAtools/man/dimtypicality.Rd |only GDAtools-1.7/GDAtools/man/flip.mca.Rd |only GDAtools-1.7/GDAtools/man/ggadd_attractions.Rd |only GDAtools-1.7/GDAtools/man/ggadd_chulls.Rd |only GDAtools-1.7/GDAtools/man/ggadd_corr.Rd |only GDAtools-1.7/GDAtools/man/ggadd_density.Rd |only GDAtools-1.7/GDAtools/man/ggadd_ellipses.Rd | 24 ++-- GDAtools-1.7/GDAtools/man/ggadd_interaction.Rd | 16 +- GDAtools-1.7/GDAtools/man/ggadd_kellipses.Rd |only GDAtools-1.7/GDAtools/man/ggadd_supind.Rd |only GDAtools-1.7/GDAtools/man/ggadd_supvar.Rd | 12 +- GDAtools-1.7/GDAtools/man/ggassoc_boxplot.Rd |only GDAtools-1.7/GDAtools/man/ggassoc_crosstab.Rd |only GDAtools-1.7/GDAtools/man/ggassoc_phiplot.Rd |only GDAtools-1.7/GDAtools/man/ggassoc_scatter.Rd |only GDAtools-1.7/GDAtools/man/ggcloud_indiv.Rd | 35 ++++- GDAtools-1.7/GDAtools/man/ggcloud_variables.Rd | 19 ++- GDAtools-1.7/GDAtools/man/homog.test.Rd | 10 + GDAtools-1.7/GDAtools/man/modif.rate.Rd | 6 - GDAtools-1.7/GDAtools/man/speMCA.Rd | 2 GDAtools-1.7/GDAtools/man/tabcontrib.Rd | 8 - GDAtools-1.7/GDAtools/man/translate.logit.Rd | 3 GDAtools-1.7/GDAtools/man/varsup.Rd | 6 - GDAtools-1.7/GDAtools/vignettes |only 91 files changed, 760 insertions(+), 437 deletions(-)
Title: Summarize CRAN Check Results in the Terminal
Description: The CRAN check results and where your package stands in the
CRAN submission queue in your R terminal.
Author: Francois Michonneau [aut, cre],
Ben Bolker [ctb]
Maintainer: Francois Michonneau <francois.michonneau@gmail.com>
Diff between foghorn versions 1.4.0 dated 2021-05-05 and 1.4.1 dated 2021-05-31
DESCRIPTION | 6 +- MD5 | 14 ++--- NEWS.md | 6 ++ R/cran_flavors.R | 9 +-- build/vignette.rds |binary inst/doc/foghorn.html | 78 +++++++++++++++++---------------- man/n_cran_flavors.Rd | 4 - tests/testthat/test-n_cran_platforms.R | 2 8 files changed, 64 insertions(+), 55 deletions(-)
Title: Calculation of Slope-Dependant Accumulated Cost Surface,
Least-Cost Paths, and Least-Cost Corridors Related to Human
Movement Across the Landscape
Description: Provides the facility to calculate non-isotropic accumulated cost surface, least-cost paths, and least-cost corridors using a number of human-movement-related cost functions that can be selected by the user. It just requires a Digital Terrain Model, a start location and (optionally) destination locations. See Alberti (2019) <doi:10.1016/j.softx.2019.100331>.
Author: Gianmarco Alberti [aut, cre]
Maintainer: Gianmarco Alberti <gianmarcoalberti@gmail.com>
Diff between movecost versions 0.8 dated 2021-05-21 and 0.9 dated 2021-05-31
DESCRIPTION | 15 ++-- MD5 | 16 ++-- NAMESPACE | 5 + NEWS.md | 6 + R/movecorr.R | 204 +++++++++++++++++++++++++++++++++++++++++++++----------- R/movecost.R | 37 +++++++--- README.md | 8 +- man/movecorr.Rd | 103 ++++++++++++++++++++++------ man/movecost.Rd | 29 ++++++- 9 files changed, 334 insertions(+), 89 deletions(-)
Title: Functions to Inline C, C++, Fortran Function Calls from R
Description: Functionality to dynamically define R functions and S4 methods
with 'inlined' C, C++ or Fortran code supporting the .C and .Call calling
conventions.
Author: Oleg Sklyar, Duncan Murdoch, Mike Smith, Dirk Eddelbuettel,
Romain Francois, Karline Soetaert, Johannes Ranke
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between inline versions 0.3.18 dated 2021-05-18 and 0.3.19 dated 2021-05-31
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ build/partial.rdb |binary inst/NEWS.Rd | 11 ++++++++++- inst/tinytest/test_cfunction.R | 5 ++++- inst/tinytest/test_utilities.R | 4 ++++ man/utilities.Rd | 27 ++++++++++++++++++--------- 7 files changed, 46 insertions(+), 21 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-02-26 1.0.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-01-07 1.7.2
2020-12-04 1.7.1
2020-10-25 1.7
2020-04-23 1.6
2020-04-21 1.5
2020-04-17 1.4
2020-04-16 1.3
2020-04-11 1.2
2020-04-04 1.1
2020-03-31 1.0
More information about triggerstrategy at CRAN
Permanent link
Title: Survey Value of Information
Description: Decision support tool for prioritizing sites for ecological
surveys based on their potential to improve plans for conserving
biodiversity (e.g. plans for establishing protected areas). Given a set of
sites that could potentially be acquired for conservation management,
it can be used to generate and evaluate plans for surveying additional
sites. Specifically, plans for ecological surveys can be
generated using various conventional approaches (e.g. maximizing expected
species richness, geographic coverage, diversity of sampled environmental
algorithms. After generating such survey plans, they can be evaluated using
conditions) and maximizing value of information. Please note that several
functions depend on the 'Gurobi' optimization software (available from
<https://www.gurobi.com>). Additionally, the JAGS software (available from
<https://mcmc-jags.sourceforge.io/>) is required to fit hierarchical
generalized linear models.
Author: Jeffrey O Hanson [aut, cre] (<https://orcid.org/0000-0002-4716-6134>),
Iadine Chadès [aut] (<https://orcid.org/0000-0002-7442-2850>),
Emma J Hudgins [aut] (<https://orcid.org/0000-0002-8402-5111>),
Joseph R Bennett [aut] (<https://orcid.org/0000-0002-3901-9513>),
Free Software Foundation, Inc [ctb, cph] (gmp)
Maintainer: Jeffrey O Hanson <jeffrey.hanson@uqconnect.edu.au>
Diff between surveyvoi versions 1.0.2 dated 2021-05-27 and 1.0.3 dated 2021-05-31
DESCRIPTION | 22 +++++++++--------- MD5 | 20 ++++++++--------- NEWS.md | 5 ++++ R/package.R | 5 +++- README.md | 5 +++- configure | 56 ++++++++++++++++++++++++++++++++++-------------- inst/doc/surveyvoi.html | 4 +-- man/surveyvoi.Rd | 5 +++- src/Makevars.in | 1 src/Makevars.win | 2 - src/package.h | 7 ++---- 11 files changed, 85 insertions(+), 47 deletions(-)
Title: Add Even More Interactivity to Interactive Charts
Description: Like package 'manipulate' does for static graphics, this package
helps to easily add controls like sliders, pickers, checkboxes, etc. that
can be used to modify the input data or the parameters of an interactive
chart created with package 'htmlwidgets'.
Author: Veronique Bachelier [aut, cre],
Jalal-Edine ZAWAM [aut],
Francois Guillem [aut],
RTE [cph],
JJ Allaire [ctb],
Marion Praz [ctb] (New user interface),
Benoit Thieurmel [ctb],
Titouan Robert [ctb],
Duncan Murdoch [ctb]
Maintainer: Veronique Bachelier <veronique.bachelier@rte-france.com>
Diff between manipulateWidget versions 0.10.1 dated 2020-02-24 and 0.11.0 dated 2021-05-31
manipulateWidget-0.10.1/manipulateWidget/R/init_inputs.R |only manipulateWidget-0.10.1/manipulateWidget/R/input_utils.R |only manipulateWidget-0.10.1/manipulateWidget/tests/testthat/test-init_inputs.R |only manipulateWidget-0.10.1/manipulateWidget/tests/testthat/test-input_utils.R |only manipulateWidget-0.11.0/manipulateWidget/DESCRIPTION | 12 manipulateWidget-0.11.0/manipulateWidget/MD5 | 120 manipulateWidget-0.11.0/manipulateWidget/NAMESPACE | 14 manipulateWidget-0.11.0/manipulateWidget/NEWS.md | 20 manipulateWidget-0.11.0/manipulateWidget/R/combine_widgets.R | 2 manipulateWidget-0.11.0/manipulateWidget/R/compare_options.R | 7 manipulateWidget-0.11.0/manipulateWidget/R/controller.R | 225 manipulateWidget-0.11.0/manipulateWidget/R/get_row_and_cols.R | 2 manipulateWidget-0.11.0/manipulateWidget/R/input_class.R | 61 manipulateWidget-0.11.0/manipulateWidget/R/input_env.R |only manipulateWidget-0.11.0/manipulateWidget/R/input_list_class.R | 172 manipulateWidget-0.11.0/manipulateWidget/R/inputs.R | 30 manipulateWidget-0.11.0/manipulateWidget/R/manipulate_widget.R | 162 manipulateWidget-0.11.0/manipulateWidget/R/module_ui.R | 57 manipulateWidget-0.11.0/manipulateWidget/R/mw_ui.R | 204 manipulateWidget-0.11.0/manipulateWidget/R/shiny_module.R |only manipulateWidget-0.11.0/manipulateWidget/R/shiny_module_compare_inputs.R |only manipulateWidget-0.11.0/manipulateWidget/R/shiny_module_grid.R |only manipulateWidget-0.11.0/manipulateWidget/R/shiny_module_inputarea.R |only manipulateWidget-0.11.0/manipulateWidget/R/shiny_module_menu.R |only manipulateWidget-0.11.0/manipulateWidget/R/static_image.R | 2 manipulateWidget-0.11.0/manipulateWidget/R/translations.R |only manipulateWidget-0.11.0/manipulateWidget/R/zzz.R | 38 manipulateWidget-0.11.0/manipulateWidget/build/vignette.rds |binary manipulateWidget-0.11.0/manipulateWidget/data |only manipulateWidget-0.11.0/manipulateWidget/inst/doc/manipulateWidgets.R | 2 manipulateWidget-0.11.0/manipulateWidget/inst/doc/manipulateWidgets.Rmd | 4 manipulateWidget-0.11.0/manipulateWidget/inst/doc/manipulateWidgets.html | 6347 ---------- manipulateWidget-0.11.0/manipulateWidget/inst/lib/export/html2canvas/html2canvas.js | 3393 ----- manipulateWidget-0.11.0/manipulateWidget/inst/manipulate_widget/manipulate_widget.css | 119 manipulateWidget-0.11.0/manipulateWidget/inst/manipulate_widget/manipulate_widget.js | 24 manipulateWidget-0.11.0/manipulateWidget/man/MWController-class.Rd | 156 manipulateWidget-0.11.0/manipulateWidget/man/combineWidgets-shiny.Rd | 60 manipulateWidget-0.11.0/manipulateWidget/man/combineWidgets.Rd | 338 manipulateWidget-0.11.0/manipulateWidget/man/compareOptions.Rd | 109 manipulateWidget-0.11.0/manipulateWidget/man/knit_print.MWController.Rd | 30 manipulateWidget-0.11.0/manipulateWidget/man/manipulateWidget-package.Rd | 152 manipulateWidget-0.11.0/manipulateWidget/man/manipulateWidget.Rd | 553 manipulateWidget-0.11.0/manipulateWidget/man/mwCheckbox.Rd | 110 manipulateWidget-0.11.0/manipulateWidget/man/mwCheckboxGroup.Rd | 118 manipulateWidget-0.11.0/manipulateWidget/man/mwDate.Rd | 106 manipulateWidget-0.11.0/manipulateWidget/man/mwDateRange.Rd | 118 manipulateWidget-0.11.0/manipulateWidget/man/mwGroup.Rd | 110 manipulateWidget-0.11.0/manipulateWidget/man/mwModule.Rd | 213 manipulateWidget-0.11.0/manipulateWidget/man/mwNumeric.Rd | 108 manipulateWidget-0.11.0/manipulateWidget/man/mwPassword.Rd | 116 manipulateWidget-0.11.0/manipulateWidget/man/mwRadio.Rd | 116 manipulateWidget-0.11.0/manipulateWidget/man/mwSelect.Rd | 162 manipulateWidget-0.11.0/manipulateWidget/man/mwSelectize.Rd | 150 manipulateWidget-0.11.0/manipulateWidget/man/mwSharedValue.Rd | 134 manipulateWidget-0.11.0/manipulateWidget/man/mwSlider.Rd | 138 manipulateWidget-0.11.0/manipulateWidget/man/mwText.Rd | 106 manipulateWidget-0.11.0/manipulateWidget/man/mwTranslations.Rd |only manipulateWidget-0.11.0/manipulateWidget/man/staticPlot.Rd | 108 manipulateWidget-0.11.0/manipulateWidget/man/summary.MWController.Rd | 30 manipulateWidget-0.11.0/manipulateWidget/man/worldEnergyUse.Rd |only manipulateWidget-0.11.0/manipulateWidget/tests/testthat/helper-input_class.R | 8 manipulateWidget-0.11.0/manipulateWidget/tests/testthat/test-controller.R | 25 manipulateWidget-0.11.0/manipulateWidget/tests/testthat/test-input_env.R |only manipulateWidget-0.11.0/manipulateWidget/tests/testthat/test-input_list_class.R | 94 manipulateWidget-0.11.0/manipulateWidget/tests/testthat/test-inputs.R | 7 manipulateWidget-0.11.0/manipulateWidget/tests/testthat/test-mwGroup.R |only manipulateWidget-0.11.0/manipulateWidget/tests/testthat/test-on_done.R | 4 manipulateWidget-0.11.0/manipulateWidget/vignettes/fancy-example.gif |binary manipulateWidget-0.11.0/manipulateWidget/vignettes/manipulateWidgets.Rmd | 4 69 files changed, 2596 insertions(+), 11904 deletions(-)
More information about manipulateWidget at CRAN
Permanent link
Title: Recursive Partitioning for Longitudinal Data and Right Censored
Data Using Baseline Covariates
Description: Constructs tree for continuous longitudinal data and survival data using baseline covariates as partitioning variables according to the 'LongCART' and 'SurvCART' algorithm, respectively. Later also included functions to calculate conditional power and predictive power of success based on interim results and probability of success for a prospective trial.
Author: Madan G Kundu
Maintainer: Madan G Kundu <madan_g.kundu@yahoo.com>
Diff between LongCART versions 3.0 dated 2021-01-17 and 3.1 dated 2021-05-31
LongCART-3.0/LongCART/R/SurvCART.R |only LongCART-3.1/LongCART/DESCRIPTION | 8 ++++---- LongCART-3.1/LongCART/MD5 | 10 +++++----- LongCART-3.1/LongCART/R/StabCat_surv.R | 6 +++--- LongCART-3.1/LongCART/R/StabCont_surv.R | 2 +- LongCART-3.1/LongCART/R/SurvCART_30May2021.R |only LongCART-3.1/LongCART/man/SurvCART.Rd | 2 +- 7 files changed, 14 insertions(+), 14 deletions(-)
Title: Efficient Stepwise Selection in Decomposable Models
Description: An implementation of the ESS algorithm following Amol Deshpande, Minos Garofalakis,
Michael I Jordan (2013) <arXiv:1301.2267>. The ESS algorithm
is used for model selection in decomposable graphical models.
Author: Mads Lindskou [aut, cre]
Maintainer: Mads Lindskou <mads@math.aau.dk>
Diff between ess versions 1.0 dated 2020-05-24 and 1.1.2 dated 2021-05-31
DESCRIPTION | 10 +-- MD5 | 52 +++++++++--------- NAMESPACE | 2 NEWS.md | 13 ++++ R/api_dgmsim.R | 8 -- R/api_entropy.R | 99 +++++++++++++++++++++-------------- R/api_fit_graph.R | 99 +++++++++++++++-------------------- R/api_fit_tree.R | 59 ++++++++++---------- R/api_walk_bwd.R | 50 ++++++++--------- R/api_walk_fwd.R | 51 ++++++++++-------- R/class_gengraph.R | 75 ++++++++++++-------------- R/helper_decomp_graphs.R | 13 +--- R/helper_gengraph.R | 36 ++++++++---- R/helper_walk_fwd.R | 90 ++++++++++++++++++++----------- README.md | 79 ++++++++++++++++++--------- build |only inst/tinytest/test_decomposability.R | 6 +- man/as_igraph.Rd |only man/dgm_sim_from_graph.Rd | 8 -- man/entropy.Rd | 9 ++- man/figures/README-var_select-1.png |binary man/fit_components.Rd | 28 +++++---- man/fit_graph.Rd | 44 ++++++++------- man/gengraph.Rd | 18 +++--- man/is_decomposable.Rd | 4 - man/subgraph.Rd | 8 +- man/walk.fwd.Rd | 2 tests/tinytest.R | 1 28 files changed, 484 insertions(+), 380 deletions(-)
Title: Access to RFR (Risk-Free Rate) Curves Produced by the EIOPA
Description: Provides EIOPA (European Insurance And Occupational Pensions Authority) risk-free rates. Please note that the author of this package is not affiliated with EIOPA. The data is accessed through a REST API available at <https://mehdiechchelh.com/api/>.
Author: Mehdi Echchelh [aut, cre]
Maintainer: Mehdi Echchelh <mehdi.echel@gmail.com>
Diff between eiopaR versions 0.1.0 dated 2021-04-28 and 0.1.1 dated 2021-05-31
DESCRIPTION | 8 MD5 | 31 +- NAMESPACE | 1 NEWS.md | 10 R/api.R | 42 +++ R/const.R | 3 R/eiopaR.R | 486 +++++++++++++++++++++---------------------- README.md | 19 + man/get_options.Rd | 2 man/get_rfr.Rd | 4 man/get_rfr_no_va.Rd | 2 man/get_rfr_with_va.Rd | 2 man/options_rfr_types.Rd | 3 man/print.eiopa_rfr.Rd | 2 man/try_GET.Rd |only tests/testthat/test-api.R | 4 tests/testthat/test-eiopaR.R | 12 + 17 files changed, 360 insertions(+), 271 deletions(-)
Title: Spatio-Temporal Generalised Linear Mixed Models for Areal Unit
Data
Description: Implements a class of univariate and multivariate spatio-temporal generalised linear mixed models for areal unit data, with inference in a Bayesian setting using Markov chain Monte Carlo (MCMC) simulation. The response variable can be binomial, Gaussian, or Poisson, but for some models only the binomial and Poisson data likelihoods are available. The spatio-temporal autocorrelation is modelled by random effects, which are assigned conditional autoregressive (CAR) style prior distributions. A number of different random effects structures are available, including models similar to Bernardinelli et al. (1995) <doi:10.1002/sim.4780142112> and Rushworth et al. (2014) <doi:10.1016/j.sste.2014.05.001>. Full details are given in the vignette accompanying this package. The creation and development of this package was supported by the Engineering and Physical Sciences Research Council (EPSRC) grants EP/J017442/1 and EP/T004878/1 and the Medical Research Council (MRC) grant MR/L022184/1.
Author: Duncan Lee, Alastair Rushworth, Gary Napier and William Pettersson
Maintainer: Duncan Lee <Duncan.Lee@glasgow.ac.uk>
Diff between CARBayesST versions 3.2 dated 2021-03-30 and 3.2.1 dated 2021-05-31
DESCRIPTION | 12 ++++++------ MD5 | 18 +++++++++--------- NAMESPACE | 1 - R/binomial.CARadaptive.R | 2 +- R/common.functions.R | 2 -- R/gaussian.CARadaptive.R | 2 +- R/poisson.CARadaptive.R | 2 +- build/vignette.rds |binary inst/doc/CARBayesST.pdf |binary man/CARBayesST-package.Rd | 4 ++-- 10 files changed, 20 insertions(+), 23 deletions(-)
Title: Spatial Generalised Linear Mixed Models for Areal Unit Data
Description: Implements a class of univariate and multivariate spatial generalised linear mixed models for areal unit data, with inference in a Bayesian setting using Markov chain Monte Carlo (MCMC) simulation. The response variable can be binomial, Gaussian, multinomial, Poisson or zero-inflated Poisson (ZIP), and spatial autocorrelation is modelled by a set of random effects that are assigned a conditional autoregressive (CAR) prior distribution. A number of different models are available for univariate spatial data, including models with no random effects as well as random effects modelled by different types of CAR prior, including the BYM model (Besag et al. (1991) <doi:10.1007/BF00116466>), the Leroux model (Leroux et al. (2000) <doi:10.1007/978-1-4612-1284-3_4>) and the localised model (Lee et al. (2015) <doi:10.1002/env.2348>). Additionally, a multivariate CAR (MCAR) model for multivariate spatial data is available, as is a two-level hierarchical model for modelling data relating to individuals within areas. Full details are given in the vignette accompanying this package. The initial creation of this package was supported by the Economic and Social Research Council (ESRC) grant RES-000-22-4256, and on-going development has been supported by the Engineering and Physical Science Research Council (EPSRC) grant EP/J017442/1, ESRC grant ES/K006460/1, Innovate UK / Natural Environment Research Council (NERC) grant NE/N007352/1 and the TB Alliance.
Author: Duncan Lee
Maintainer: Duncan Lee <Duncan.Lee@glasgow.ac.uk>
Diff between CARBayes versions 5.2.3 dated 2021-02-03 and 5.2.4 dated 2021-05-31
DESCRIPTION | 12 ++++++------ MD5 | 14 +++++++------- NAMESPACE | 1 - R/common.functions.R | 2 -- build/vignette.rds |binary inst/doc/CARBayes.pdf |binary man/CARBayes-package.Rd | 4 ++-- src/CARBayes.cpp | 7 +++++-- 8 files changed, 20 insertions(+), 20 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-05-17 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-04-30 1.0.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-07-22 0.2.11
2020-07-17 0.2.10
2020-07-07 0.2.9
2020-07-03 0.2.7
Title: Two-Dimensional Field Smoothing
Description: Perform two-dimensional smoothing for spatial fields using FFT and the convolution theorem (see Gilleland 2013, <doi:10.5065/D61834G2>).
Author: Eric Gilleland <EricG@ucar.edu>
Maintainer: Eric Gilleland <EricG@ucar.edu>
Diff between smoothie versions 1.0-1 dated 2013-07-06 and 1.0-3 dated 2021-05-31
DESCRIPTION | 16 +++++----- MD5 | 17 ++++++----- NAMESPACE | 3 ++ R/smoothers.R | 71 +++++++++++++++++++++++++++++++++++++++++++++--- build |only inst/CITATION | 5 +-- man/hoods2dsmooth.Rd | 6 ++-- man/kernel2dmeitsjer.Rd | 8 ++++- man/kernel2dsmooth.Rd | 6 ++-- man/smoothie-package.Rd | 2 - 10 files changed, 102 insertions(+), 32 deletions(-)
Title: DBI Connector to Presto
Description: Implements a 'DBI' compliant interface to Presto. Presto is
an open source distributed SQL query engine for running interactive
analytic queries against data sources of all sizes ranging from
gigabytes to petabytes: <https://prestodb.io/>.
Author: Onur Ismail Filiz [aut],
Sergey Goder [aut],
Thomas J. Leeper [ctb, cre],
John Myles White [ctb]
Maintainer: Thomas J. Leeper <thomasleeper@fb.com>
Diff between RPresto versions 1.3.5 dated 2020-11-13 and 1.3.6 dated 2021-05-31
DESCRIPTION | 19 ++++++++++++------- MD5 | 4 ++-- NEWS.md | 6 +++++- 3 files changed, 19 insertions(+), 10 deletions(-)
Title: Calculation of 22 CAnonical Time-Series CHaracteristics
Description: Calculate 22 summary statistics coded in C on time-series vectors to enable
pattern detection, classification, and regression applications in the
feature space as proposed by Lubba et al. (2019) <doi:10.1007/s10618-019-00647-x>.
Author: Trent Henderson [cre, aut],
Carl Lubba [ctb]
Maintainer: Trent Henderson <then6675@uni.sydney.edu.au>
Diff between Rcatch22 versions 0.1.10 dated 2021-05-18 and 0.1.12 dated 2021-05-31
DESCRIPTION | 10 - MD5 | 20 +-- README.md | 21 ++- src/CO_AutoCorr.c | 309 ++++++++++++++++++++++--------------------------- src/CO_AutoCorr.h | 25 +-- src/SP_Summaries.c | 35 +++-- src/butterworth.c | 170 +++----------------------- src/fft.c | 77 ++++++++---- src/fft.h | 31 ++-- src/helper_functions.c | 102 +++++++--------- src/helper_functions.h | 19 +-- 11 files changed, 352 insertions(+), 467 deletions(-)
Title: Calculate Accurate Precision-Recall and ROC (Receiver Operator
Characteristics) Curves
Description: Accurate calculations and visualization of precision-recall and ROC (Receiver Operator Characteristics)
curves. Saito and Rehmsmeier (2015) <doi:10.1371/journal.pone.0118432>.
Author: Takaya Saito [aut, cre] (<https://orcid.org/0000-0002-0154-8452>),
Marc Rehmsmeier [aut] (<https://orcid.org/0000-0002-5021-7721>)
Maintainer: Takaya Saito <takaya.saito@outlook.com>
Diff between precrec versions 0.12.5 dated 2021-04-06 and 0.12.7 dated 2021-05-31
DESCRIPTION | 20 ++-- MD5 | 20 ++-- NEWS.md | 5 + build/vignette.rds |binary inst/doc/introduction.html | 152 +++++++++++++++---------------- src/precrec_misc.cpp | 2 src/precrec_mmx.cpp | 1 src/precrec_plx.cpp | 1 tests/testthat/test_g_autoplot1_pl.R | 2 tests/testthat/test_g_autoplot2_curves.R | 2 tests/testthat/test_g_autoplot3_points.R | 2 11 files changed, 112 insertions(+), 95 deletions(-)
Title: Various Tools and Data for Quantitative Peace Science
Description: These are useful tools and data sets for the study of quantitative
peace science. The goal for this package is to include tools and data sets
for doing original research that mimics well what a user would have to previously
get from a software package that may not be well-sourced or well-supported.
Those software bundles were useful the extent to which they encourage replications
of long-standing analyses by starting the data-generating process from scratch. However,
a lot of the functionality can be done relatively quickly and more transparently
in the R programming language.
Author: Steve Miller [aut, cre] (<https://orcid.org/0000-0003-4072-6263>)
Maintainer: Steve Miller <steven.v.miller@gmail.com>
Diff between peacesciencer versions 0.3.0 dated 2021-04-28 and 0.4.0 dated 2021-05-31
DESCRIPTION | 11 + MD5 | 42 ++++--- NAMESPACE | 1 NEWS.md | 12 ++ R/add_cow_mids.R |only R/add_gml_mids.R |only R/add_mids.R | 2 R/add_peace_years.R |only R/data.R | 194 ++++++++++++++++++++++++++++++++- R/zzz.R | 3 README.md | 22 +++ build/partial.rdb |binary data/ccode_democracy.rda |binary data/cow_mid_ddydisps.rda |only data/cow_mid_dirdisps.rda |only data/cow_mid_disps.rda |only data/gml_dirdisp.rda |binary data/gml_mid_ddydisps.rda |only data/ucdp_acd.rda |binary man/add_cow_mids.Rd |only man/add_gml_mids.Rd |only man/add_peace_years.Rd |only man/atop_alliance.Rd | 2 man/cow_mid_ddydisps.Rd |only man/cow_mid_dirdisps.Rd |only man/cow_mid_disps.Rd |only man/cow_trade_sy.Rd | 2 man/gml_mid_ddydisps.Rd |only tests/testthat/test_nodamnduplicates.R | 4 29 files changed, 267 insertions(+), 28 deletions(-)
Title: Ensemble Algorithms for Time Series Forecasting with Modeltime
Description: A 'modeltime' extension that implements time series ensemble forecasting methods including model averaging,
weighted averaging, and stacking. These techniques are popular methods
to improve forecast accuracy and stability. Refer to papers such as
"Machine-Learning Models for Sales Time Series Forecasting" Pavlyshenko, B.M. (2019) <doi:10.3390>.
Author: Matt Dancho [aut, cre],
Business Science [cph]
Maintainer: Matt Dancho <mdancho@business-science.io>
Diff between modeltime.ensemble versions 0.4.0 dated 2021-04-05 and 0.4.1 dated 2021-05-31
DESCRIPTION | 12 LICENSE | 4 MD5 | 76 - NAMESPACE | 121 - NEWS.md | 78 - R/00_global_variables.R | 10 R/00_imports.R | 12 R/dev-model_descriptions.R | 166 +- R/ensemble_average.R | 208 +-- R/ensemble_model_spec.R | 810 ++++++------- R/ensemble_weighted.R | 268 ++-- R/modeltime_calibrate.R | 26 R/modeltime_forecast.R | 1106 +++++++++--------- R/modeltime_recursive.R | 66 - R/modeltime_refit.R | 383 +++--- R/tibble-type_sum.R | 16 R/utils-pipe.R | 22 R/utils-tidy-eval.R | 94 - README.md | 396 +++--- build/vignette.rds |binary inst/doc/getting-started-with-modeltime-ensemble.R | 240 +-- inst/doc/getting-started-with-modeltime-ensemble.Rmd | 498 ++++---- inst/doc/getting-started-with-modeltime-ensemble.html | 783 ++++++------ inst/doc/recursive-ensembles.R | 344 ++--- inst/doc/recursive-ensembles.Rmd | 644 +++++----- inst/doc/recursive-ensembles.html | 916 +++++++------- man/ensemble_average.Rd | 124 +- man/ensemble_model_spec.Rd | 302 ++-- man/ensemble_weighted.Rd | 126 +- man/pipe.Rd | 24 man/tidyeval.Rd | 102 - tests/testthat.R | 38 tests/testthat/test-ensemble_average.R | 331 +++-- tests/testthat/test-ensemble_model_spec.R | 538 ++++---- tests/testthat/test-ensemble_weighted.R | 234 +-- tests/testthat/test-panel-data.R | 460 +++---- tests/testthat/test-recursive.R | 466 +++---- vignettes/getting-started-with-modeltime-ensemble.Rmd | 498 ++++---- vignettes/recursive-ensembles.Rmd | 644 +++++----- 39 files changed, 5656 insertions(+), 5530 deletions(-)
More information about modeltime.ensemble at CRAN
Permanent link
Title: Empirical Likelihood Ratio Test for Two Samples with Censored
Data
Description: Calculates the p-value for a mean-type hypothesis (or multiple mean-type hypotheses) based on two samples with censored data.
Author: William H. Barton <williamhbarton1@gmail.com> under the supervision of Dr. Mai Zhou <mai@ms.uky.edu>
Maintainer: Mai Zhou <maizhou@gmail.com>
Diff between emplik2 versions 1.21 dated 2018-08-18 and 1.30 dated 2021-05-31
DESCRIPTION | 12 ++++++------ MD5 | 14 +++++++------- R/el2.cen.EMm.R | 4 ++-- R/el2.test.wtm.R | 2 +- man/el2.cen.EMm.Rd | 34 ++++++++++++++++++---------------- man/el2.cen.EMs.Rd | 8 +++++--- man/el2.test.wtm.Rd | 2 +- man/emplik2-internal.Rd | 3 ++- 8 files changed, 42 insertions(+), 37 deletions(-)
Title: Understand and Describe Bayesian Models and Posterior
Distributions
Description: Provides utilities to describe posterior
distributions and Bayesian models. It includes point-estimates such as
Maximum A Posteriori (MAP), measures of dispersion (Highest Density
Interval - HDI; Kruschke, 2015 <doi:10.1016/C2012-0-00477-2>) and
indices used for null-hypothesis testing (such as ROPE percentage, pd
and Bayes factors).
Author: Dominique Makowski [aut, cre] (<https://orcid.org/0000-0001-5375-9967>,
@Dom_Makowski),
Daniel Lüdecke [aut] (<https://orcid.org/0000-0002-8895-3206>,
@strengejacke),
Mattan S. Ben-Shachar [aut] (<https://orcid.org/0000-0002-4287-4801>,
@mattansb),
Indrajeet Patil [aut] (<https://orcid.org/0000-0003-1995-6531>,
@patilindrajeets),
Michael D. Wilson [aut] (<https://orcid.org/0000-0003-4143-7308>),
Paul-Christian Bürkner [rev],
Tristan Mahr [rev] (<https://orcid.org/0000-0002-8890-5116>),
Henrik Singmann [ctb] (<https://orcid.org/0000-0002-4842-3657>),
Quentin F. Gronau [ctb] (<https://orcid.org/0000-0001-5510-6943>),
Sam Crawley [ctb] (<https://orcid.org/0000-0002-7847-0411>)
Maintainer: Dominique Makowski <dom.makowski@gmail.com>
Diff between bayestestR versions 0.9.0 dated 2021-04-08 and 0.10.0 dated 2021-05-31
bayestestR-0.10.0/bayestestR/DESCRIPTION | 23 bayestestR-0.10.0/bayestestR/MD5 | 152 ++-- bayestestR-0.10.0/bayestestR/NAMESPACE | 25 bayestestR-0.10.0/bayestestR/NEWS.md | 303 ++++++-- bayestestR-0.10.0/bayestestR/R/bayesfactor_inclusion.R | 10 bayestestR-0.10.0/bayestestR/R/bayesfactor_models.R | 24 bayestestR-0.10.0/bayestestR/R/bayesfactor_parameters.R | 12 bayestestR-0.10.0/bayestestR/R/bayesfactor_restricted.R | 12 bayestestR-0.10.0/bayestestR/R/bci.R |only bayestestR-0.10.0/bayestestR/R/bic_to_bf.R | 11 bayestestR-0.10.0/bayestestR/R/check_prior.R | 6 bayestestR-0.10.0/bayestestR/R/ci.R | 8 bayestestR-0.10.0/bayestestR/R/contr.orthonorm.R |only bayestestR-0.10.0/bayestestR/R/describe_posterior.R | 101 ++ bayestestR-0.10.0/bayestestR/R/describe_prior.R | 6 bayestestR-0.10.0/bayestestR/R/diagnostic_draws.R |only bayestestR-0.10.0/bayestestR/R/eti.R | 4 bayestestR-0.10.0/bayestestR/R/format.R | 67 + bayestestR-0.10.0/bayestestR/R/p_direction.R | 2 bayestestR-0.10.0/bayestestR/R/point_estimate.R | 2 bayestestR-0.10.0/bayestestR/R/print.R | 5 bayestestR-0.10.0/bayestestR/R/print.bayesfactor_models.R | 14 bayestestR-0.10.0/bayestestR/R/print_html.R | 20 bayestestR-0.10.0/bayestestR/R/print_md.R | 12 bayestestR-0.10.0/bayestestR/R/reshape_iterations.R | 2 bayestestR-0.10.0/bayestestR/R/rope_range.R | 105 +-- bayestestR-0.10.0/bayestestR/R/si.R | 4 bayestestR-0.10.0/bayestestR/R/unupdate.R | 4 bayestestR-0.10.0/bayestestR/R/utils_bayesfactor.R | 16 bayestestR-0.10.0/bayestestR/R/weighted_posteriors.R | 2 bayestestR-0.10.0/bayestestR/build/partial.rdb |binary bayestestR-0.10.0/bayestestR/build/vignette.rds |binary bayestestR-0.10.0/bayestestR/inst/WORDLIST | 12 bayestestR-0.10.0/bayestestR/inst/doc/bayes_factors.R | 196 +---- bayestestR-0.10.0/bayestestR/inst/doc/bayes_factors.Rmd | 193 +---- bayestestR-0.10.0/bayestestR/inst/doc/bayes_factors.html | 350 +++++----- bayestestR-0.10.0/bayestestR/inst/doc/example1.Rmd | 2 bayestestR-0.10.0/bayestestR/inst/doc/example1.html | 6 bayestestR-0.10.0/bayestestR/inst/doc/example2.R | 9 bayestestR-0.10.0/bayestestR/inst/doc/example2.Rmd | 11 bayestestR-0.10.0/bayestestR/inst/doc/example2.html | 48 - bayestestR-0.10.0/bayestestR/inst/doc/example3.Rmd | 2 bayestestR-0.10.0/bayestestR/inst/doc/indicesExistenceComparison.Rmd | 2 bayestestR-0.10.0/bayestestR/inst/doc/mediation.Rmd | 2 bayestestR-0.10.0/bayestestR/inst/doc/mediation.html | 4 bayestestR-0.10.0/bayestestR/man/bayesfactor_inclusion.Rd | 2 bayestestR-0.10.0/bayestestR/man/bayesfactor_models.Rd | 3 bayestestR-0.10.0/bayestestR/man/bayesfactor_parameters.Rd | 6 bayestestR-0.10.0/bayestestR/man/bayesfactor_restricted.Rd | 10 bayestestR-0.10.0/bayestestR/man/bci.Rd |only bayestestR-0.10.0/bayestestR/man/bic_to_bf.Rd | 4 bayestestR-0.10.0/bayestestR/man/ci.Rd | 4 bayestestR-0.10.0/bayestestR/man/contr.orthonorm.Rd |only bayestestR-0.10.0/bayestestR/man/describe_posterior.Rd | 9 bayestestR-0.10.0/bayestestR/man/diagnostic_draws.Rd |only bayestestR-0.10.0/bayestestR/man/mediation.Rd | 4 bayestestR-0.10.0/bayestestR/man/rope_range.Rd | 38 - bayestestR-0.10.0/bayestestR/man/si.Rd | 4 bayestestR-0.10.0/bayestestR/man/weighted_posteriors.Rd | 2 bayestestR-0.10.0/bayestestR/tests/spelling.R | 9 bayestestR-0.10.0/bayestestR/tests/testthat/test-bayesfactor_models.R | 16 bayestestR-0.10.0/bayestestR/tests/testthat/test-bayesfactor_parameters.R | 22 bayestestR-0.10.0/bayestestR/tests/testthat/test-bayesfactor_restricted.R | 4 bayestestR-0.10.0/bayestestR/tests/testthat/test-blavaan.R | 22 bayestestR-0.10.0/bayestestR/tests/testthat/test-check_prior.R | 22 bayestestR-0.10.0/bayestestR/tests/testthat/test-describe_posterior.R | 2 bayestestR-0.10.0/bayestestR/tests/testthat/test-describe_prior.R | 32 bayestestR-0.10.0/bayestestR/tests/testthat/test-different_models.R | 19 bayestestR-0.10.0/bayestestR/tests/testthat/test-emmGrid.R | 8 bayestestR-0.10.0/bayestestR/tests/testthat/test-p_significance.R | 1 bayestestR-0.10.0/bayestestR/tests/testthat/test-si.R | 3 bayestestR-0.10.0/bayestestR/vignettes/bayes_factors.Rmd | 193 +---- bayestestR-0.10.0/bayestestR/vignettes/example1.Rmd | 2 bayestestR-0.10.0/bayestestR/vignettes/example2.Rmd | 11 bayestestR-0.10.0/bayestestR/vignettes/example3.Rmd | 2 bayestestR-0.10.0/bayestestR/vignettes/indicesExistenceComparison.Rmd | 2 bayestestR-0.10.0/bayestestR/vignettes/mediation.Rmd | 2 bayestestR-0.10.0/bayestestR/vignettes/web_only/apa.csl |only bayestestR-0.10.0/bayestestR/vignettes/web_only/bibliography.bib |only bayestestR-0.10.0/bayestestR/vignettes/web_only/indicesEstimationComparison.Rmd | 11 bayestestR-0.9.0/bayestestR/R/contr.bayes.R |only bayestestR-0.9.0/bayestestR/man/contr.bayes.Rd |only 82 files changed, 1217 insertions(+), 1041 deletions(-)
Title: Actuarial Functions and Heavy Tailed Distributions
Description: Functions and data sets for actuarial science:
modeling of loss distributions; risk theory and ruin theory;
simulation of compound models, discrete mixtures and compound
hierarchical models; credibility theory. Support for many additional
probability distributions to model insurance loss size and
frequency: 23 continuous heavy tailed distributions; the
Poisson-inverse Gaussian discrete distribution; zero-truncated and
zero-modified extensions of the standard discrete distributions.
Support for phase-type distributions commonly used to compute ruin
probabilities.
Author: Vincent Goulet [cre, aut],
Sébastien Auclair [ctb],
Christophe Dutang [aut],
Nicholas Langevin [ctb],
Xavier Milhaud [ctb],
Tommy Ouellet [ctb],
Alexandre Parent [ctb],
Mathieu Pigeon [aut],
Louis-Philippe Pouliot [ctb],
Jeffrey A. Ryan [aut] (Package API),
Robert Gentleman [aut] (Parts of the R to C interface),
Ross Ihaka [aut] (Parts of the R to C interface),
R Core Team [aut] (Parts of the R to C interface),
R Foundation [aut] (Parts of the R to C interface)
Maintainer: Vincent Goulet <vincent.goulet@act.ulaval.ca>
Diff between actuar versions 3.1-3 dated 2021-05-28 and 3.1-4 dated 2021-05-31
DESCRIPTION | 10 - MD5 | 55 +++++----- inst/NEWS.Rd | 9 + inst/doc/actuar.Rnw | 2 inst/doc/actuar.pdf |binary inst/doc/coverage.Rnw | 2 inst/doc/coverage.pdf |binary inst/doc/credibility.Rnw | 2 inst/doc/credibility.pdf |binary inst/doc/distributions.Rnw | 2 inst/doc/distributions.pdf |binary inst/doc/modeling.Rnw | 2 inst/doc/modeling.pdf |binary inst/doc/risk.Rnw | 2 inst/doc/risk.pdf |binary inst/doc/simulation.Rnw | 2 inst/doc/simulation.pdf |binary tests/dpqr-tests.R | 240 ++++++++++++++++++++++---------------------- vignettes/actuar.Rnw | 2 vignettes/auto |only vignettes/coverage.Rnw | 2 vignettes/credibility.Rnw | 2 vignettes/distributions.Rnw | 2 vignettes/modeling.Rnw | 2 vignettes/risk.Rnw | 2 vignettes/simulation.Rnw | 2 26 files changed, 179 insertions(+), 163 deletions(-)
Title: Cross-Platform 'zip' Compression
Description: Cross-Platform 'zip' Compression Library. A replacement
for the 'zip' function, that does not require any additional
external tools on any platform.
Author: Gábor Csárdi, Kuba Podgórski, Rich Geldreich
Maintainer: Gábor Csárdi <csardi.gabor@gmail.com>
Diff between zip versions 2.1.1 dated 2020-08-27 and 2.2.0 dated 2021-05-31
DESCRIPTION | 11 +-- LICENSE |only MD5 | 27 ++++---- NEWS.md | 6 + R/zip.R | 8 ++ README.md | 135 +++++++++++++++++++++++++++-------------- man/unzip.Rd | 2 man/zip.Rd | 2 man/zip_list.Rd | 8 ++ src/miniz.c | 81 ++++++++++++------------ src/rzip.c | 8 +- src/winutils.c | 36 ++++++++-- src/zip.h | 3 tests/testthat/test-paths.R | 1 tests/testthat/test-zip-list.R | 8 +- 15 files changed, 214 insertions(+), 122 deletions(-)
Title: The Generalized DINA Model Framework
Description: A set of psychometric tools for cognitive diagnosis modeling based on the generalized deterministic inputs, noisy and gate (G-DINA) model by de la Torre (2011) <DOI:10.1007/s11336-011-9207-7> and its extensions, including the sequential G-DINA model by Ma and de la Torre (2016) <DOI:10.1111/bmsp.12070> for polytomous responses, and the polytomous G-DINA model by Chen and de la Torre <DOI:10.1177/0146621613479818> for polytomous attributes. Joint attribute distribution can be independent, saturated, higher-order, loglinear smoothed or structured. Q-matrix validation, item and model fit statistics, model comparison at test and item level and differential item functioning can also be conducted. A graphical user interface is also provided. For tutorials, please check Ma and de la Torre (2020) <DOI:10.18637/jss.v093.i14>, Ma and de la Torre (2019) <DOI:10.1111/emip.12262>, Ma (2019) <DOI:10.1007/978-3-030-05584-4_29> and de la Torre and Akbay (2019) <DOI:10.14689/ejer.2019.80.9>.
Author: Wenchao Ma [aut, cre, cph],
Jimmy de la Torre [aut, cph],
Miguel Sorrel [ctb],
Zhehan Jiang [ctb]
Maintainer: Wenchao Ma <wenchao.ma@ua.edu>
Diff between GDINA versions 2.8.0 dated 2020-05-24 and 2.8.7 dated 2021-05-31
GDINA-2.8.0/GDINA/data/sim10MCDINA.RData |only GDINA-2.8.7/GDINA/DESCRIPTION | 23 - GDINA-2.8.7/GDINA/MD5 | 45 +- GDINA-2.8.7/GDINA/NEWS.md | 11 GDINA-2.8.7/GDINA/R/CA.R | 2 GDINA-2.8.7/GDINA/R/GDI.R | 377 ++++++++++++++++++++----- GDINA-2.8.7/GDINA/R/GDINA.R | 3 GDINA-2.8.7/GDINA/R/MCmodel.R | 2 GDINA-2.8.7/GDINA/R/MultipleGroup_Estimation.R | 34 +- GDINA-2.8.7/GDINA/R/dif.R | 89 +++-- GDINA-2.8.7/GDINA/R/extract.R | 4 GDINA-2.8.7/GDINA/R/plotIRF.GDINA.R | 2 GDINA-2.8.7/GDINA/R/score.R | 6 GDINA-2.8.7/GDINA/R/sim10MCDINA2.R |only GDINA-2.8.7/GDINA/R/utils.R | 3 GDINA-2.8.7/GDINA/R/zzz.R | 2 GDINA-2.8.7/GDINA/README.md | 60 +-- GDINA-2.8.7/GDINA/build/vignette.rds |binary GDINA-2.8.7/GDINA/data/sim10MCDINA.rda |only GDINA-2.8.7/GDINA/data/sim10MCDINA2.rda |only GDINA-2.8.7/GDINA/inst/doc/GDINA.html | 277 +++--------------- GDINA-2.8.7/GDINA/man/GDINA.Rd | 3 GDINA-2.8.7/GDINA/man/MCmodel.Rd | 2 GDINA-2.8.7/GDINA/man/Qval.Rd | 51 ++- GDINA-2.8.7/GDINA/man/dif.Rd | 51 +-- GDINA-2.8.7/GDINA/man/sim10MCDINA2.Rd |only 26 files changed, 603 insertions(+), 444 deletions(-)
Title: Required 'libphonenumber' jars for the 'dialr' Package
Description: Collects 'libphonenumber' jars required for the
'dialr' package.
Author: Danny Smith [aut, cre],
Google Inc. [ctb, cph] (libphonenumber),
Vonage Holdings Corp. [ctb, cph] (libphonenumber),
Ian Galpin [ctb, cph] (libphonenumber),
Ben Gertzfield [ctb, cph] (libphonenumber)
Maintainer: Danny Smith <danny@gorcha.org>
Diff between dialrjars versions 8.12.23 dated 2021-05-15 and 8.12.24 dated 2021-05-31
dialrjars-8.12.23/dialrjars/inst/java/carrier-1.149.jar |only dialrjars-8.12.23/dialrjars/inst/java/geocoder-2.159.jar |only dialrjars-8.12.23/dialrjars/inst/java/libphonenumber-8.12.23.jar |only dialrjars-8.12.23/dialrjars/inst/java/prefixmapper-2.159.jar |only dialrjars-8.12.24/dialrjars/DESCRIPTION | 8 +++--- dialrjars-8.12.24/dialrjars/MD5 | 12 +++++----- dialrjars-8.12.24/dialrjars/NEWS.md | 10 ++++++++ dialrjars-8.12.24/dialrjars/inst/java/carrier-1.150.jar |only dialrjars-8.12.24/dialrjars/inst/java/geocoder-2.160.jar |only dialrjars-8.12.24/dialrjars/inst/java/libphonenumber-8.12.24.jar |only dialrjars-8.12.24/dialrjars/inst/java/prefixmapper-2.160.jar |only 11 files changed, 20 insertions(+), 10 deletions(-)