Title: Electronic Health Record (EHR) Data Processing and Analysis Tool
Description: Process and analyze electronic health record (EHR) data. The 'EHR'
package provides modules to perform diverse medication-related studies using
data from EHR databases. Especially, the package includes modules to perform
pharmacokinetic/pharmacodynamic (PK/PD) analyses using EHRs, as outlined in
Choi, Beck, McNeer, Weeks, Williams, James, Niu, Abou-Khalil, Birdwell, Roden,
Stein, Bejan, Denny, and Van Driest (2020) <doi:10.1002/cpt.1787>. Additional
modules will be added in future. In addition, this package provides various
functions useful to perform Phenome Wide Association Study (PheWAS) to explore
associations between drug exposure and phenotypes obtained from EHR data, as
outlined in Choi, Carroll, Beck, Mosley, Roden, Denny, and Van Driest (2018)
<doi:10.1093/bioinformatics/bty306>.
Author: Leena Choi [aut, cre] (<https://orcid.org/0000-0002-2544-7090>),
Cole Beck [aut] (<https://orcid.org/0000-0002-6849-6255>),
Hannah Weeks [aut] (<https://orcid.org/0000-0002-0262-6790>),
Elizabeth McNeer [aut],
Nathan James [aut] (<https://orcid.org/0000-0001-7079-9151>),
Michael Williams [aut]
Maintainer: Leena Choi <naturechoi@gmail.com>
Diff between EHR versions 0.3-1 dated 2020-10-08 and 0.4-0 dated 2021-06-05
DESCRIPTION | 38 ++++--- MD5 | 130 +++++++++++++++++++------- NAMESPACE | 20 ++++ R/EHR-package.R | 2 R/Logistf.R | 153 +++++-------------------------- R/addLastDose.R | 4 R/buildDose.R | 7 - R/collapseDose.R | 4 R/extractMed.R | 6 - R/modDemo.R |only R/modDrugLevel.R |only R/modLabs.R |only R/modMedStr1.R |only R/modMedStr2.R |only R/modPK.R |only R/parseClamp.R | 2 R/parseMedExtractR.R | 4 R/parseMedex.R | 2 R/parseMedxn.R | 2 R/pkDosingInterval.R |only R/processLastDose.R | 2 R/stdzDose.R | 6 + R/stdzDoseChange.R |only R/stdzDoseSchedule.R |only R/stdzDuration.R | 48 +++++++++ R/stdzFreq.R | 5 - R/utilsId.R |only R/utilsMod.R |only R/utilsPk.R |only build/vignette.rds |binary inst/doc/DoseBuilding_vignette.Rmd | 2 inst/doc/DoseBuilding_vignette.pdf |binary inst/doc/ehr_vignette_Build_PK_Oral.R |only inst/doc/ehr_vignette_Build_PK_Oral.Rmd |only inst/doc/ehr_vignette_Build_PK_Oral.pdf |only inst/doc/ehr_vignette_mxr.pdf |binary inst/doc/ehr_vignette_str.R |only inst/doc/ehr_vignette_str.Rmd |only inst/doc/ehr_vignette_str.pdf |only inst/examples/lam_gs_part1.csv |only inst/examples/lam_gs_part2_date.csv |only inst/examples/lam_gs_part2_note.csv |only inst/examples/lam_mxr_out.csv |only inst/examples/str_ex1 |only inst/examples/str_ex2 |only man/EHR-package.Rd | 4 man/Logistf.Rd | 12 -- man/addLastDose.Rd | 2 man/buildDose.Rd | 7 - man/build_lastdose.Rd |only man/collapseDose.Rd | 2 man/extractMed.Rd | 6 - man/idCrosswalk.Rd |only man/mod-internal.Rd |only man/parseCLAMP.Rd | 2 man/parseMedEx.Rd | 2 man/parseMedExtractR.Rd | 4 man/parseMedXN.Rd | 2 man/pk-internal.Rd |only man/processLastDose.Rd | 3 man/pullFakeId.Rd |only man/pullRealId.Rd |only man/run_Build_PK_IV.Rd |only man/run_Build_PK_Oral.Rd |only man/run_Demo.Rd |only man/run_DrugLevel.Rd |only man/run_Labs.Rd |only man/run_MedStrI.Rd |only man/run_MedStrII.Rd |only man/stdzDoseChange.Rd |only man/stdzDoseSchedule.Rd |only man/writeCheckData.Rd |only vignettes/DoseBuilding_vignette.Rmd | 2 vignettes/ehr_vignette_Build_PK_Oral.Rmd |only vignettes/ehr_vignette_str.Rmd |only 75 files changed, 286 insertions(+), 199 deletions(-)
Title: Datasets and Functions to Benchmark Neural Network Packages
Description: Datasets and functions to benchmark (convergence, speed, ease of use) R packages dedicated to regression with neural networks (no classification in this version). The templates for the tested packages are available in the R, R Markdown and HTML formats at <https://github.com/pkR-pkR/NNbenchmarkTemplates> and <https://theairbend3r.github.io/NNbenchmarkWeb/index.html>. The submitted article to the R-Journal can be read at <https://www.inmodelia.com/gsoc2020.html>.
Author: Patrice Kiener [aut, cre] (<https://orcid.org/0000-0002-0505-9920>),
Christophe Dutang [aut] (<https://orcid.org/0000-0001-6732-1501>),
Salsabila Mahdi [aut] (<https://orcid.org/0000-0002-2559-4154>),
Akshaj Verma [aut] (<https://orcid.org/0000-0002-3936-0033>),
Yifu Yan [ctb]
Maintainer: Patrice Kiener <rpackages@inmodelia.com>
Diff between NNbenchmark versions 3.1.9 dated 2021-03-09 and 3.2.0 dated 2021-06-05
DESCRIPTION | 8 ++-- MD5 | 8 ++-- NEWS | 8 ++++ R/NNtrainPredict.R | 94 +++++++++++++++++++++++++++----------------------- man/NNtrainPredict.Rd | 6 +-- 5 files changed, 70 insertions(+), 54 deletions(-)
Title: Principal Component Analysis (PCA) and Whitening
Description: Provides functions to standardize and whiten data, and to perform
Principal Component Analysis (PCA). The main advantage of this
package over alternatives like prcomp() is, that jvcoords makes it
easy to convert (additional) data between the original and the
transformed coordinates. The package also provides a class coords,
which can represent affine coordinate transformations. This class
forms the basis of the transformations provided by the package, but
can also be used independently. The implementation has been
optimized to be of comparable speed (and sometimes even faster) than
existing alternatives.
Author: Jochen Voss [aut, cre] (<https://orcid.org/0000-0002-2323-3814>)
Maintainer: Jochen Voss <voss@seehuhn.de>
Diff between jvcoords versions 1.0.2 dated 2018-12-17 and 1.0.3 dated 2021-06-05
DESCRIPTION | 8 ++++---- MD5 | 13 +++++++------ NEWS |only man/jvcoords-package.Rd | 10 ++++------ man/standardize.Rd | 2 +- tests/PCA_test.R | 6 +++--- tests/standardize_test.R | 6 +++--- tests/whiten_test.R | 6 +++--- 8 files changed, 25 insertions(+), 26 deletions(-)
Title: Call 'BEAST2'
Description: 'BEAST2' (<https://www.beast2.org>) is a widely used
Bayesian phylogenetic tool, that uses DNA/RNA/protein data
and many model priors to create a posterior of jointly estimated
phylogenies and parameters.
'BEAST2' is a command-line tool.
This package provides a way to call 'BEAST2'
from an 'R' function call.
Author: Richèl J.C. Bilderbeek [aut, cre]
(<https://orcid.org/0000-0003-1107-7049>),
Joëlle Barido-Sottani [rev] (Joëlle reviewed the package for rOpenSci,
see https://github.com/ropensci/onboarding/issues/209),
David Winter [rev] (David reviewed the package for rOpenSci, see
https://github.com/ropensci/onboarding/issues/209),
Jason Griffiths [ctb] (<https://orcid.org/0000-0002-1667-8233>),
Thijs Janzen [ctb]
Maintainer: Richèl J.C. Bilderbeek <richel@richelbilderbeek.nl>
Diff between beastier versions 2.4 dated 2021-05-23 and 2.4.2 dated 2021-06-05
DESCRIPTION | 10 +- MD5 | 82 +++++++++-------- NAMESPACE | 1 R/are_beast2_input_lines.R | 32 +++--- R/beastier.R | 1 R/check_can_create_dir_for_state_output_file.R | 1 R/check_can_create_screenlog_file.R | 5 - R/check_can_create_state_output_file.R | 6 + R/check_can_create_tracelog_file.R | 5 - R/check_can_create_treelog_file.R | 5 - R/continue_beast2.R | 1 R/create_beast2_run_cmd.R | 3 R/create_beast2_validate_cmd.R | 11 -- R/create_beast2_version_cmd.R | 15 +-- R/create_random_fasta.R | 9 + R/create_temp_input_filename.R | 7 - R/create_temp_state_filename.R | 11 -- R/do_minimal_run.R | 9 - R/get_beastier_tempfilename.R |only R/run_beast2.R | 7 + R/run_beast2_from_options.R | 2 R/save_lines.R | 4 inst/WORDLIST | 2 inst/doc/demo.R | 1 inst/doc/demo.Rmd | 1 inst/doc/demo.html | 116 +------------------------ man/are_beast2_input_lines.Rd | 2 man/are_beast2_input_lines_deep.Rd | 2 man/beastier.Rd | 1 man/continue_beast2.Rd | 1 man/create_beast2_run_cmd.Rd | 3 man/create_beast2_validate_cmd.Rd | 3 man/create_beast2_validate_cmd_bin.Rd | 4 man/create_beast2_validate_cmd_jar.Rd | 4 man/create_beast2_version_cmd.Rd | 3 man/create_beast2_version_cmd_bin.Rd | 4 man/create_beast2_version_cmd_jar.Rd | 8 - man/create_random_fasta.Rd | 4 man/get_beastier_tempfilename.Rd |only man/run_beast2.Rd | 7 + man/run_beast2_from_options.Rd | 1 man/save_lines.Rd | 3 vignettes/demo.Rmd | 1 43 files changed, 155 insertions(+), 243 deletions(-)
Title: Interactive Viewing of Spatial Data in R
Description: Quickly and conveniently create interactive
visualisations of spatial data with or without background maps.
Attributes of displayed features are fully queryable via pop-up
windows. Additional functionality includes methods to visualise true-
and false-color raster images and bounding boxes.
Author: Tim Appelhans [cre, aut],
Florian Detsch [aut],
Christoph Reudenbach [aut],
Stefan Woellauer [aut],
Spaska Forteva [ctb],
Thomas Nauss [ctb],
Edzer Pebesma [ctb],
Kenton Russell [ctb],
Michael Sumner [ctb],
Jochen Darley [ctb],
Pierre Roudier [ctb],
Patrick Schratz [ctb],
Environmental Informatics Marburg [ctb],
Lorenzo Busetto [ctb]
Maintainer: Tim Appelhans <tim.appelhans@gmail.com>
Diff between mapview versions 2.9.0 dated 2020-08-11 and 2.10.0 dated 2021-06-05
mapview-2.10.0/mapview/DESCRIPTION | 16 mapview-2.10.0/mapview/MD5 | 67 - mapview-2.10.0/mapview/NEWS | 25 mapview-2.10.0/mapview/NEWS.md | 25 mapview-2.10.0/mapview/R/color.R | 70 - mapview-2.10.0/mapview/R/extent.R | 20 mapview-2.10.0/mapview/R/fgb.R | 4 mapview-2.10.0/mapview/R/initpkg.R | 4 mapview-2.10.0/mapview/R/legend.R | 80 + mapview-2.10.0/mapview/R/mapView.R | 62 - mapview-2.10.0/mapview/R/mapviewControls.R | 143 +- mapview-2.10.0/mapview/R/ops.R | 12 mapview-2.10.0/mapview/R/options.R | 509 +++++----- mapview-2.10.0/mapview/R/popup.R | 4 mapview-2.10.0/mapview/R/print.R | 67 + mapview-2.10.0/mapview/R/projection.R | 60 - mapview-2.10.0/mapview/R/raster.R | 5 mapview-2.10.0/mapview/R/sf.R | 49 mapview-2.10.0/mapview/R/stars.R | 326 +++--- mapview-2.10.0/mapview/R/viewRGB.R | 24 mapview-2.10.0/mapview/R/watch.R | 24 mapview-2.10.0/mapview/README.md | 34 mapview-2.10.0/mapview/data/breweries.rda |binary mapview-2.10.0/mapview/data/franconia.rda |binary mapview-2.10.0/mapview/data/trails.rda |binary mapview-2.10.0/mapview/inst/htmlwidgets/lib/css/mapview-popup.css | 6 mapview-2.10.0/mapview/inst/tinytest |only mapview-2.10.0/mapview/man/mapView.Rd | 27 mapview-2.10.0/mapview/man/mapviewOptions.Rd | 17 mapview-2.10.0/mapview/man/viewRGB.Rd | 6 mapview-2.10.0/mapview/tests/tinytest.R |only mapview-2.9.0/mapview/inst/htmlwidgets/lib/slideView_style |only mapview-2.9.0/mapview/inst/htmlwidgets/plainView.js |only mapview-2.9.0/mapview/inst/htmlwidgets/plainView.yaml |only mapview-2.9.0/mapview/tests/testthat |only mapview-2.9.0/mapview/tests/testthat.R |only 36 files changed, 1039 insertions(+), 647 deletions(-)
Title: Highlight Lines and Points in 'ggplot2'
Description: Make it easier to explore data with highlights.
Author: Hiroaki Yutani [aut, cre] (<https://orcid.org/0000-0002-3385-7233>)
Maintainer: Hiroaki Yutani <yutani.ini@gmail.com>
Diff between gghighlight versions 0.3.1 dated 2020-12-12 and 0.3.2 dated 2021-06-05
DESCRIPTION | 7 - MD5 | 42 ++++---- NAMESPACE | 1 NEWS.md | 13 ++ R/gghighlight-package.R | 6 + R/gghighlight.R | 37 +++++-- R/util.R | 10 ++ build/gghighlight.pdf |binary build/vignette.rds |binary inst/doc/gghighlight.R | 9 + inst/doc/gghighlight.Rmd | 12 ++ inst/doc/gghighlight.html | 103 ++++++++++++---------- man/figures/README-gghighlight-simple-1.png |binary man/figures/README-gghighlight-theme-facets-1.png |binary man/figures/README-gghighlight-theme-facets-2.png |binary man/gghighlight.Rd | 3 man/reexports.Rd | 3 tests/figs/deps.txt | 4 tests/figs/vdiffr/simple-line-chart.svg | 9 - tests/testthat/test-bleach.R | 7 + tests/testthat/test-label.R | 16 +-- vignettes/gghighlight.Rmd | 12 ++ 22 files changed, 191 insertions(+), 103 deletions(-)
Title: Download Data from Bank of Spain
Description: Tools to download data series from 'Banco de España' ('BdE') on
'tibble' format. 'Banco de España' is the national central bank
and, within the framework of the Single Supervisory Mechanism ('SSM'), the
supervisor of the Spanish banking system along with the European Central
Bank. This package is in no way sponsored endorsed or administered by
'Banco de España'.
Author: Diego H. Herrero [aut, cre, cph]
(<https://orcid.org/0000-0001-8457-4658>),
Banco de España [cph] (for the data.)
Maintainer: Diego H. Herrero <dev.dieghernan@gmail.com>
Diff between tidyBdE versions 0.1.0 dated 2021-04-08 and 0.1.1 dated 2021-06-05
tidyBdE-0.1.0/tidyBdE/R/pals_bde.R |only tidyBdE-0.1.0/tidyBdE/man/bde_pals.Rd |only tidyBdE-0.1.1/tidyBdE/DESCRIPTION | 22 ++- tidyBdE-0.1.1/tidyBdE/MD5 | 44 ++++-- tidyBdE-0.1.1/tidyBdE/NAMESPACE | 4 tidyBdE-0.1.1/tidyBdE/NEWS.md | 8 + tidyBdE-0.1.1/tidyBdE/R/bde_pals.R |only tidyBdE-0.1.1/tidyBdE/R/deprecated_scales.R |only tidyBdE-0.1.1/tidyBdE/R/scales.R |only tidyBdE-0.1.1/tidyBdE/R/series.R | 4 tidyBdE-0.1.1/tidyBdE/R/utils.R | 4 tidyBdE-0.1.1/tidyBdE/README.md | 83 +++++++++---- tidyBdE-0.1.1/tidyBdE/build |only tidyBdE-0.1.1/tidyBdE/inst/CITATION | 6 tidyBdE-0.1.1/tidyBdE/inst/doc |only tidyBdE-0.1.1/tidyBdE/inst/schemaorg.json |only tidyBdE-0.1.1/tidyBdE/man/bde_parse_dates.Rd | 2 tidyBdE-0.1.1/tidyBdE/man/bde_series_full_load.Rd | 2 tidyBdE-0.1.1/tidyBdE/man/bde_series_load.Rd | 2 tidyBdE-0.1.1/tidyBdE/man/bde_vivid_pal.Rd |only tidyBdE-0.1.1/tidyBdE/man/deprecated_scales.Rd |only tidyBdE-0.1.1/tidyBdE/man/figures/README-chart-1.png |binary tidyBdE-0.1.1/tidyBdE/man/figures/README-gdp-1.png |binary tidyBdE-0.1.1/tidyBdE/man/figures/README-macroseries-1.png |binary tidyBdE-0.1.1/tidyBdE/man/figures/README-palettes-1.png |only tidyBdE-0.1.1/tidyBdE/man/figures/lifecycle-deprecated.svg |only tidyBdE-0.1.1/tidyBdE/man/scales_bde.Rd |only tidyBdE-0.1.1/tidyBdE/man/tidyBdE-package.Rd | 5 tidyBdE-0.1.1/tidyBdE/vignettes |only 29 files changed, 127 insertions(+), 59 deletions(-)
Title: Access to the 'twelvedata' Financial Data API
Description: The 'twelvedata' REST service offers access to current and historical
data on stocks, standard as well as digital 'crypto' currencies, and other financial
assets covering a wide variety of course and time spans. See <https://twelvedata.com/>
for details, to create an account, and to request an API key for free-but-capped access
to the data.
Author: Dirk Eddelbuettel
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between td versions 0.0.3 dated 2021-05-29 and 0.0.4 dated 2021-06-05
ChangeLog | 11 +++++++++++ DESCRIPTION | 9 ++++----- MD5 | 10 +++++----- R/init.R | 2 +- README.md | 4 ++-- build/partial.rdb |binary 6 files changed, 23 insertions(+), 13 deletions(-)
Title: Common R Scripts and Utilities Used by the Statnet Project
Software
Description: Non-statistical utilities used by the software developed by the Statnet Project. They may also be of use to others.
Author: Pavel N. Krivitsky [aut, cre] (<https://orcid.org/0000-0002-9101-3362>,
University of New South Wales),
Skye Bender-deMoll [ctb],
Chad Klumb [ctb] (University of Washington)
Maintainer: Pavel N. Krivitsky <pavel@statnet.org>
Diff between statnet.common versions 4.4.1 dated 2020-10-03 and 4.5.0 dated 2021-06-05
statnet.common-4.4.1/statnet.common/R/rle_reexport.R |only statnet.common-4.4.1/statnet.common/man/rle-reexport.Rd |only statnet.common-4.5.0/statnet.common/DESCRIPTION | 21 statnet.common-4.5.0/statnet.common/LICENSE | 2 statnet.common-4.5.0/statnet.common/MD5 | 53 - statnet.common-4.5.0/statnet.common/NAMESPACE | 44 - statnet.common-4.5.0/statnet.common/NEWS | 65 + statnet.common-4.5.0/statnet.common/NEWS.md | 41 + statnet.common-4.5.0/statnet.common/R/cite.utilities.R | 2 statnet.common-4.5.0/statnet.common/R/control.utilities.R | 404 +++++++++- statnet.common-4.5.0/statnet.common/R/deprecation_utils.R | 9 statnet.common-4.5.0/statnet.common/R/formula.utilities.R | 57 + statnet.common-4.5.0/statnet.common/R/locator.R |only statnet.common-4.5.0/statnet.common/R/logspace.utils.R | 2 statnet.common-4.5.0/statnet.common/R/mcmc-utils.R | 2 statnet.common-4.5.0/statnet.common/R/misc.utilities.R | 79 + statnet.common-4.5.0/statnet.common/R/startup.utilities.R | 173 +--- statnet.common-4.5.0/statnet.common/R/string.utilities.R | 49 + statnet.common-4.5.0/statnet.common/build |only statnet.common-4.5.0/statnet.common/inst/CITATION | 14 statnet.common-4.5.0/statnet.common/inst/templates |only statnet.common-4.5.0/statnet.common/man/as.control.list.Rd |only statnet.common-4.5.0/statnet.common/man/attr.Rd |only statnet.common-4.5.0/statnet.common/man/check.control.class.Rd | 48 - statnet.common-4.5.0/statnet.common/man/default_options.Rd |only statnet.common-4.5.0/statnet.common/man/deprecation-utilities.Rd | 4 statnet.common-4.5.0/statnet.common/man/empty_env.Rd |only statnet.common-4.5.0/statnet.common/man/fixed.pval.Rd |only statnet.common-4.5.0/statnet.common/man/formula.utilities.Rd | 16 statnet.common-4.5.0/statnet.common/man/handle.controls.Rd |only statnet.common-4.5.0/statnet.common/man/locate_function.Rd |only statnet.common-4.5.0/statnet.common/man/simplify_simple.Rd |only statnet.common-4.5.0/statnet.common/man/snctrl-API.Rd |only statnet.common-4.5.0/statnet.common/man/snctrl.Rd |only statnet.common-4.5.0/statnet.common/man/statnetStartupMessage.Rd | 52 - 35 files changed, 875 insertions(+), 262 deletions(-)
More information about statnet.common at CRAN
Permanent link
Title: Lazy Search in R Packages, Task Views, CRAN, the Web. All-in-One
Download
Description: Search by keywords in R packages, task views, CRAN, the web and display the results in the console or in txt, html or pdf files. Download the package documentation (html index, README, NEWS, pdf manual, vignettes, source code, binaries) with a single instruction. Visualize the package dependencies and CRAN checks. Compare the package versions, unload and install the packages and their dependencies in a safe order. Explore CRAN archives. Use the above functions for task view maintenance. Access web search engines from the console thanks to 80+ bookmarks. All functions accept standard and non-standard evaluation.
Author: Patrice Kiener [aut, cre] (<https://orcid.org/0000-0002-0505-9920>)
Maintainer: Patrice Kiener <rpackages@inmodelia.com>
Diff between RWsearch versions 4.8.0 dated 2020-04-20 and 4.9.3 dated 2021-06-05
RWsearch-4.8.0/RWsearch/inst/doc/RWsearch-2-Print-Download-Doc.Rmd |only RWsearch-4.8.0/RWsearch/inst/doc/RWsearch-2-Print-Download-Doc.html |only RWsearch-4.8.0/RWsearch/inst/doc/RWsearch-3-TaskViews.Rmd |only RWsearch-4.8.0/RWsearch/inst/doc/RWsearch-3-TaskViews.html |only RWsearch-4.8.0/RWsearch/inst/doc/RWsearch-4-Web-search-engines.Rmd |only RWsearch-4.8.0/RWsearch/inst/doc/RWsearch-4-Web-search-engines.html |only RWsearch-4.8.0/RWsearch/vignettes/RWsearch-2-Print-Download-Doc.Rmd |only RWsearch-4.8.0/RWsearch/vignettes/RWsearch-3-TaskViews.Rmd |only RWsearch-4.8.0/RWsearch/vignettes/RWsearch-4-Web-search-engines.Rmd |only RWsearch-4.9.3/RWsearch/DESCRIPTION | 26 RWsearch-4.9.3/RWsearch/MD5 | 134 +- RWsearch-4.9.3/RWsearch/NAMESPACE | 12 RWsearch-4.9.3/RWsearch/NEWS | 123 + RWsearch-4.9.3/RWsearch/R/a_intro.R | 90 - RWsearch-4.9.3/RWsearch/R/archivedb.R | 9 RWsearch-4.9.3/RWsearch/R/checkdb.R | 56 RWsearch-4.9.3/RWsearch/R/cnsc.R | 127 -- RWsearch-4.9.3/RWsearch/R/crandb.R | 39 RWsearch-4.9.3/RWsearch/R/cranmirrors.R | 42 RWsearch-4.9.3/RWsearch/R/e_check.R | 12 RWsearch-4.9.3/RWsearch/R/funmaintext.R | 10 RWsearch-4.9.3/RWsearch/R/h_direct.R | 75 - RWsearch-4.9.3/RWsearch/R/h_engine.R | 65 - RWsearch-4.9.3/RWsearch/R/p_archive.R | 88 - RWsearch-4.9.3/RWsearch/R/p_check.R | 230 +-- RWsearch-4.9.3/RWsearch/R/p_deps.R | 212 ++- RWsearch-4.9.3/RWsearch/R/p_down.R | 194 +-- RWsearch-4.9.3/RWsearch/R/p_graph.R | 55 RWsearch-4.9.3/RWsearch/R/p_html.R | 2 RWsearch-4.9.3/RWsearch/R/p_inst.R |only RWsearch-4.9.3/RWsearch/R/p_inun.R | 2 RWsearch-4.9.3/RWsearch/R/p_table2pdf.R | 2 RWsearch-4.9.3/RWsearch/R/p_text2pdf.R | 47 RWsearch-4.9.3/RWsearch/R/p_unload_all.R |only RWsearch-4.9.3/RWsearch/R/p_vers.R | 156 ++ RWsearch-4.9.3/RWsearch/R/s_crandb.R | 9 RWsearch-4.9.3/RWsearch/R/s_crandb_tvdb.R | 2 RWsearch-4.9.3/RWsearch/R/s_tvdb.R | 2 RWsearch-4.9.3/RWsearch/R/tvdb.R | 6 RWsearch-4.9.3/RWsearch/README.md | 55 RWsearch-4.9.3/RWsearch/build/vignette.rds |binary RWsearch-4.9.3/RWsearch/data/zcrandb.rda |binary RWsearch-4.9.3/RWsearch/data/ztvdb.rda |binary RWsearch-4.9.3/RWsearch/inst/aabb/zCRAN-archive.html | 103 - RWsearch-4.9.3/RWsearch/inst/aabb/zcheck_results.rds |binary RWsearch-4.9.3/RWsearch/inst/doc/RWsearch-1-Introduction.Rmd | 634 +++++----- RWsearch-4.9.3/RWsearch/inst/doc/RWsearch-1-Introduction.html | 564 +++----- RWsearch-4.9.3/RWsearch/inst/doc/RWsearch-2-Display-Download-Documentation.Rmd |only RWsearch-4.9.3/RWsearch/inst/doc/RWsearch-2-Display-Download-Documentation.html |only RWsearch-4.9.3/RWsearch/inst/doc/RWsearch-3-Package-versions-and-dependencies.Rmd |only RWsearch-4.9.3/RWsearch/inst/doc/RWsearch-3-Package-versions-and-dependencies.html |only RWsearch-4.9.3/RWsearch/inst/doc/RWsearch-4-Tools-for-taskviews.Rmd |only RWsearch-4.9.3/RWsearch/inst/doc/RWsearch-4-Tools-for-taskviews.html |only RWsearch-4.9.3/RWsearch/inst/doc/RWsearch-5-Web-search-engines.Rmd |only RWsearch-4.9.3/RWsearch/inst/doc/RWsearch-5-Web-search-engines.html |only RWsearch-4.9.3/RWsearch/man/RWsearch-package.Rd | 64 - RWsearch-4.9.3/RWsearch/man/archivedb.Rd | 1 RWsearch-4.9.3/RWsearch/man/checkdb.Rd | 20 RWsearch-4.9.3/RWsearch/man/cnsc.Rd | 16 RWsearch-4.9.3/RWsearch/man/crandb.Rd | 31 RWsearch-4.9.3/RWsearch/man/cranmirrors.Rd | 6 RWsearch-4.9.3/RWsearch/man/e_check.Rd | 12 RWsearch-4.9.3/RWsearch/man/h_direct.Rd | 35 RWsearch-4.9.3/RWsearch/man/h_engine.Rd | 16 RWsearch-4.9.3/RWsearch/man/p_archive.Rd | 25 RWsearch-4.9.3/RWsearch/man/p_check.Rd | 8 RWsearch-4.9.3/RWsearch/man/p_deps.Rd | 47 RWsearch-4.9.3/RWsearch/man/p_down.Rd | 26 RWsearch-4.9.3/RWsearch/man/p_graph.Rd | 3 RWsearch-4.9.3/RWsearch/man/p_inst.Rd |only RWsearch-4.9.3/RWsearch/man/p_unload_all.Rd |only RWsearch-4.9.3/RWsearch/man/p_vers.Rd | 63 RWsearch-4.9.3/RWsearch/man/s_crandb.Rd | 1 RWsearch-4.9.3/RWsearch/man/zcrandb.Rd | 13 RWsearch-4.9.3/RWsearch/man/ztvdb.Rd | 9 RWsearch-4.9.3/RWsearch/vignettes/RWsearch-1-Introduction.Rmd | 634 +++++----- RWsearch-4.9.3/RWsearch/vignettes/RWsearch-2-Display-Download-Documentation.Rmd |only RWsearch-4.9.3/RWsearch/vignettes/RWsearch-3-Package-versions-and-dependencies.Rmd |only RWsearch-4.9.3/RWsearch/vignettes/RWsearch-4-Tools-for-taskviews.Rmd |only RWsearch-4.9.3/RWsearch/vignettes/RWsearch-5-Web-search-engines.Rmd |only RWsearch-4.9.3/RWsearch/vignettes/pngcss/tfestimators-RWsearch.png |only 81 files changed, 2302 insertions(+), 1911 deletions(-)
Title: The CShapes 2.0 Dataset and Utilities
Description: Package for CShapes 2.0, a GIS dataset of country borders (1886-today). Includes functions for data extraction and the computation of distance matrices and -lists.
Author: Nils B. Weidmann [aut],
Guy Schvitz [aut],
Luc Girardin [aut, cre]
Maintainer: Luc Girardin <luc.girardin@ethz.ch>
Diff between cshapes versions 0.6 dated 2016-12-02 and 2.0 dated 2021-06-05
cshapes-0.6/cshapes/ChangeLog |only cshapes-0.6/cshapes/inst/shp |only cshapes-0.6/cshapes/man/cshapes-package.Rd |only cshapes-2.0/cshapes/Changelog |only cshapes-2.0/cshapes/DESCRIPTION | 32 +++-- cshapes-2.0/cshapes/MD5 | 28 ++-- cshapes-2.0/cshapes/NAMESPACE | 17 +-- cshapes-2.0/cshapes/R/cshp.R | 84 +++++++++----- cshapes-2.0/cshapes/R/distlist.R | 72 ++++++------ cshapes-2.0/cshapes/R/distmatrix.R | 164 ++++++++++++----------------- cshapes-2.0/cshapes/inst/extdata |only cshapes-2.0/cshapes/man/cshp.Rd | 39 +----- cshapes-2.0/cshapes/man/distlist.Rd | 66 +++++------ cshapes-2.0/cshapes/man/distmatrix.Rd | 82 +++++++------- cshapes-2.0/cshapes/tests |only 15 files changed, 283 insertions(+), 301 deletions(-)
Title: Summarize and Explore the Data
Description: Exploratory analysis on any input data describing the structure and the relationships present in the data. The package automatically select the variable and does related descriptive statistics. Analyzing information value, weight of evidence, custom tables, summary statistics, graphical techniques will be performed for both numeric and categorical predictors.
Author: Dayanand Ubrangala [aut, cre],
Kiran R [aut, ctb],
Ravi Prasad Kondapalli [aut, ctb],
Sayan Putatunda [aut, ctb]
Maintainer: Dayanand Ubrangala <daya6489@gmail.com>
Diff between SmartEDA versions 0.3.7 dated 2021-04-03 and 0.3.8 dated 2021-06-05
DESCRIPTION | 6 +-- MD5 | 22 ++++++------- NEWS.md | 18 ++++++---- R/fn_exp_ExpCompViz.R | 2 - R/fn_exp_categorical_viz.R | 2 - R/fn_exp_numeric_viz.R | 4 -- inst/doc/CustomTable.html | 76 ++++++++++++++++++++++----------------------- inst/doc/SmartEDA.R | 2 - inst/doc/SmartEDA.Rmd | 4 +- inst/doc/SmartEDA.html | 22 ++++++------- tests/testthat/Rplots.pdf |binary vignettes/SmartEDA.Rmd | 4 +- 12 files changed, 82 insertions(+), 80 deletions(-)
Title: Download Weather Data from Environment and Climate Change Canada
Description: Provides means for downloading historical weather data from
the Environment and Climate Change Canada website
(<https://climate.weather.gc.ca/historical_data/search_historic_data_e.html>).
Data can be downloaded from multiple stations and over large date ranges
and automatically processed into a single dataset. Tools are also provided
to identify stations either by name or proximity to a location.
Author: Steffi LaZerte [aut, cre] (<https://orcid.org/0000-0002-7690-8360>),
Sam Albers [ctb] (<https://orcid.org/0000-0002-9270-7884>),
Nick Brown [ctb] (<https://orcid.org/0000-0002-2719-0671>),
Kevin Cazelles [ctb] (<https://orcid.org/0000-0001-6619-9874>)
Maintainer: Steffi LaZerte <steffi@steffi.ca>
Diff between weathercan versions 0.6.0 dated 2021-05-14 and 0.6.1 dated 2021-06-05
weathercan-0.6.0/weathercan/tests/fixtures/weather_day_51423_2012.yml |only weathercan-0.6.0/weathercan/tests/fixtures/weather_day_51423_54398_2017.yml |only weathercan-0.6.1/weathercan/DESCRIPTION | 10 weathercan-0.6.1/weathercan/MD5 | 54 weathercan-0.6.1/weathercan/NEWS.md | 5 weathercan-0.6.1/weathercan/R/stations.R | 51 weathercan-0.6.1/weathercan/build/vignette.rds |binary weathercan-0.6.1/weathercan/inst/WORDLIST | 2 weathercan-0.6.1/weathercan/inst/doc/flags.html | 4 weathercan-0.6.1/weathercan/inst/doc/glossary.html | 4 weathercan-0.6.1/weathercan/inst/doc/glossary_normals.html | 4 weathercan-0.6.1/weathercan/inst/doc/interpolate_data.html | 5 weathercan-0.6.1/weathercan/inst/doc/normals.html | 11 weathercan-0.6.1/weathercan/inst/doc/reproducibility.R | 4 weathercan-0.6.1/weathercan/inst/doc/reproducibility.Rmd | 4 weathercan-0.6.1/weathercan/inst/doc/reproducibility.html | 162 - weathercan-0.6.1/weathercan/inst/doc/weathercan.R | 4 weathercan-0.6.1/weathercan/inst/doc/weathercan.Rmd | 2 weathercan-0.6.1/weathercan/inst/doc/weathercan.html | 72 weathercan-0.6.1/weathercan/inst/extdata/stations.rds |binary weathercan-0.6.1/weathercan/man/stations_dl.Rd | 8 weathercan-0.6.1/weathercan/tests/fixtures/weather_day_51423_2014.yml | 448 +++++ weathercan-0.6.1/weathercan/tests/fixtures/weather_hour_51423_2014-01.yml | 891 +++++++++- weathercan-0.6.1/weathercan/tests/fixtures/weather_month_5401.yml | 80 weathercan-0.6.1/weathercan/tests/testthat/test_02_utils.R | 1 weathercan-0.6.1/weathercan/tests/testthat/test_03_station_dl.R | 32 weathercan-0.6.1/weathercan/tests/testthat/test_06_weather_dl_2_day.R | 16 weathercan-0.6.1/weathercan/vignettes/reproducibility.Rmd | 4 weathercan-0.6.1/weathercan/vignettes/weathercan.Rmd | 2 29 files changed, 1660 insertions(+), 220 deletions(-)
Title: Optimal Test Design Approach to Fixed and Adaptive Test
Construction
Description: Use the optimal test design approach by Birnbaum (1968, ISBN:9781593119348) and
van der Linden (2018) <doi:10.1201/9781315117430> in constructing fixed and adaptive tests. Supports the following
mixed-integer programming (MIP) solver packages: 'lpsymphony', 'Rsymphony', 'gurobi', 'lpSolve', and 'Rglpk'. The 'gurobi' package
is not available from CRAN; see <https://www.gurobi.com/downloads/>. See vignette for installing 'Rsymphony' package
on Mac systems.
Author: Seung W. Choi [aut, cre] (<https://orcid.org/0000-0003-4777-5420>),
Sangdon Lim [aut] (<https://orcid.org/0000-0002-2988-014X>)
Maintainer: Seung W. Choi <schoi@austin.utexas.edu>
Diff between TestDesign versions 1.2.3 dated 2021-05-24 and 1.2.4 dated 2021-06-05
TestDesign-1.2.3/TestDesign/inst/shiny/app.R |only TestDesign-1.2.4/TestDesign/DESCRIPTION | 8 TestDesign-1.2.4/TestDesign/MD5 | 55 +- TestDesign-1.2.4/TestDesign/NAMESPACE | 1 TestDesign-1.2.4/TestDesign/NEWS.md | 16 TestDesign-1.2.4/TestDesign/R/constraints_operators.R | 84 +++ TestDesign-1.2.4/TestDesign/R/import.R | 35 - TestDesign-1.2.4/TestDesign/R/loading_functions.R | 66 -- TestDesign-1.2.4/TestDesign/R/plot_functions.R | 22 TestDesign-1.2.4/TestDesign/R/print_functions.R | 17 TestDesign-1.2.4/TestDesign/R/shadow_class.R | 3 TestDesign-1.2.4/TestDesign/R/shadow_functions.R | 1 TestDesign-1.2.4/TestDesign/R/show_functions.R | 8 TestDesign-1.2.4/TestDesign/R/solver_functions.R | 54 +- TestDesign-1.2.4/TestDesign/R/summary_class.R | 16 TestDesign-1.2.4/TestDesign/R/summary_functions.R | 13 TestDesign-1.2.4/TestDesign/R/theta_functions.R | 7 TestDesign-1.2.4/TestDesign/build/vignette.rds |binary TestDesign-1.2.4/TestDesign/inst/doc/constraints.html | 422 ----------------- TestDesign-1.2.4/TestDesign/inst/doc/rsymphony.html | 196 ------- TestDesign-1.2.4/TestDesign/inst/shiny/global.r |only TestDesign-1.2.4/TestDesign/inst/shiny/server.r |only TestDesign-1.2.4/TestDesign/inst/shiny/ui.r |only TestDesign-1.2.4/TestDesign/man/output_Shadow-class.Rd | 2 TestDesign-1.2.4/TestDesign/man/print-methods.Rd | 3 TestDesign-1.2.4/TestDesign/man/runAssembly.Rd | 12 TestDesign-1.2.4/TestDesign/man/show-methods.Rd | 3 TestDesign-1.2.4/TestDesign/man/summary-classes.Rd | 1 TestDesign-1.2.4/TestDesign/man/summary-methods.Rd | 3 TestDesign-1.2.4/TestDesign/man/testSolver.Rd |only TestDesign-1.2.4/TestDesign/man/toggleConstraints.Rd | 9 31 files changed, 289 insertions(+), 768 deletions(-)
Title: Utilities for Working with NEON Data
Description: NEON data packages can be accessed through the NEON Data Portal <https://data.neonscience.org/home>
or through the NEON Data API (see <https://data.neonscience.org/data-api> for documentation). Data delivered from
the Data Portal are provided as monthly zip files packaged within a parent zip file, while individual files
can be accessed from the API. This package provides tools that aid in discovering, downloading, and reformatting
data prior to use in analyses. This includes downloading data via the API, merging data tables by type, and
converting formats. For more information, see the readme file at <https://github.com/NEONScience/NEON-utilities>.
Author: Claire Lunch [aut, cre, ctb],
Christine Laney [aut, ctb],
Nathan Mietkiewicz [aut, ctb],
Eric Sokol [aut, ctb],
Kaelin Cawley [aut, ctb],
NEON (National Ecological Observatory Network) [aut]
Maintainer: Claire Lunch <clunch@battelleecology.org>
Diff between neonUtilities versions 2.0.1 dated 2021-03-04 and 2.1.0 dated 2021-06-05
DESCRIPTION | 10 ++--- MD5 | 48 +++++++++++++-------------- R/byFileAOP.R | 4 +- R/byTileAOP.R | 4 +- R/eddyStampCheck.R | 8 +--- R/footRaster.R | 75 +++++++++++++++++++++++++++++-------------- R/getReadmePublicationDate.R | 2 - R/getZipUrls.R | 18 +++++++++- R/loadByProduct.R | 14 ++++---- R/readTableNEON.R | 4 +- R/stackByTable.R | 10 ++++- R/stackDataFilesParallel.R | 29 ++++++++++++++++ R/stackEddy.R | 21 +++++++----- R/stackFromStore.R | 45 ++++++++++++++++--------- R/sysdata.rda |binary R/unzipZipfileParallel.R | 18 ++++++++++ R/zipsByProduct.R | 15 ++++++-- R/zipsByURI.R | 4 +- README.md | 14 ++++++++ data/table_types.rda |binary man/footRaster.Rd | 2 + man/getZipUrls.Rd | 3 + man/loadByProduct.Rd | 3 + man/stackEddy.Rd | 2 - man/zipsByProduct.Rd | 3 + 25 files changed, 250 insertions(+), 106 deletions(-)
Title: Process and Analyze Mouse-Tracking Data
Description: Mouse-tracking, the analysis of mouse movements in computerized
experiments, is a method that is becoming increasingly popular in the
cognitive sciences. The mousetrap package offers functions for importing,
preprocessing, analyzing, aggregating, and visualizing mouse-tracking data.
An introduction into mouse-tracking analyses using mousetrap can be found
in Kieslich, Henninger, Wulff, Haslbeck, & Schulte-Mecklenbeck (2019)
<doi:10.4324/9781315160559-9> (preprint: <https://psyarxiv.com/zuvqa/>).
Author: Pascal J. Kieslich [aut, cre] (<https://orcid.org/0000-0002-0853-9364>),
Dirk U. Wulff [aut] (<https://orcid.org/0000-0002-4008-8022>),
Felix Henninger [aut] (<https://orcid.org/0000-0002-7730-9511>),
Jonas M. B. Haslbeck [aut],
Sarah Brockhaus [ctb]
Maintainer: Pascal J. Kieslich <pascal.kieslich@gmail.com>
Diff between mousetrap versions 3.1.5 dated 2020-08-26 and 3.2.0 dated 2021-06-05
DESCRIPTION | 11 - MD5 | 70 ++++---- NAMESPACE | 1 NEWS.md | 15 + R/bimodality.R | 2 R/cluster.R | 23 +- R/cluster_k.R | 27 +-- R/data.R | 12 - R/distmat.R | 8 - R/import.R | 4 R/map.R | 33 +--- R/measures.R | 5 R/mousetrap.R | 2 R/preprocess.R | 2 R/riverbed.R | 4 R/spatialize.R | 104 ++++++++++--- R/startupmessage.R | 2 R/utils.R | 28 +++ R/visualize.R | 328 +++++++++++++++++++++++++++++------------- README.md | 5 build |only inst/CITATION | 5 man/KH2017.Rd | 4 man/KH2017_raw.Rd | 4 man/bimodality_coefficient.Rd | 2 man/mousetrap.Rd | 2 man/mt_cluster.Rd | 23 +- man/mt_cluster_k.Rd | 27 +-- man/mt_distmat.Rd | 8 - man/mt_example_raw.Rd | 4 man/mt_import_mousetrap.Rd | 2 man/mt_length_normalize.Rd |only man/mt_map.Rd | 31 +-- man/mt_measures.Rd | 5 man/mt_plot.Rd | 67 ++++---- man/mt_plot_riverbed.Rd | 4 man/mt_spatialize.Rd | 14 + 37 files changed, 558 insertions(+), 330 deletions(-)
Title: Breakdown a Monolithic Application to a Suite of Services
Description: 'Microservice' architectural style is an approach to developing a
single application as a suite of small services, each running in its own
process and communicating with lightweight mechanisms, often an 'HTTP'
resource 'API'. These services are built around business capabilities and
independently deployable by fully automated deployment machinery. There
is a bare minimum of centralized management of these services, which may
be written in different programming languages and use different data storage
technologies.
Author: Harel Lustiger [aut, cre] (<https://orcid.org/0000-0003-2953-9598>),
Tidylab [cph, fnd]
Maintainer: Harel Lustiger <tidylab@gmail.com>
Diff between microservices versions 0.1.0 dated 2021-03-03 and 0.1.1 dated 2021-06-05
microservices-0.1.0/microservices/R/microservices-package.R |only microservices-0.1.0/microservices/inst/templates/R/microservices-package.R |only microservices-0.1.0/microservices/man/microservices-package.Rd |only microservices-0.1.1/microservices/DESCRIPTION | 11 microservices-0.1.1/microservices/MD5 | 51 +-- microservices-0.1.1/microservices/NAMESPACE | 2 microservices-0.1.1/microservices/NEWS.md |only microservices-0.1.1/microservices/R/plumber-add_service.R | 10 microservices-0.1.1/microservices/R/plumber-use_microservice.R | 15 microservices-0.1.1/microservices/R/zzz.R | 18 - microservices-0.1.1/microservices/inst/configurations/fs.yml | 6 microservices-0.1.1/microservices/inst/endpoints/plumber-utility.R | 2 microservices-0.1.1/microservices/inst/entrypoints/plumber-foreground.R | 3 microservices-0.1.1/microservices/inst/templates/R/plumber-add_service.R | 10 microservices-0.1.1/microservices/inst/templates/R/plumber-use_microservice.R | 15 microservices-0.1.1/microservices/inst/templates/R/zzz.R | 18 - microservices-0.1.1/microservices/inst/templates/docker-compose.yml | 43 -- microservices-0.1.1/microservices/inst/templates/inst/configurations/fs.yml | 6 microservices-0.1.1/microservices/inst/templates/inst/endpoints/plumber-utility.R | 2 microservices-0.1.1/microservices/inst/templates/inst/entrypoints/plumber-foreground.R | 3 microservices-0.1.1/microservices/inst/templates/tests/testthat/helpers-xyz.R | 13 microservices-0.1.1/microservices/man/add_plumber_service.Rd | 117 ++----- microservices-0.1.1/microservices/man/use_plumber_microservice.Rd | 164 ++-------- microservices-0.1.1/microservices/tests |only 24 files changed, 216 insertions(+), 293 deletions(-)
Title: Bivariate Alternating Recurrent Event Data Analysis
Description: A collection of models for bivariate alternating recurrent event data analysis.
Includes non-parametric and semi-parametric methods.
Author: Sandra Castro-Pearson [aut, cre],
Aparajita Sur [aut],
Chi Hyun Lee [aut],
Chiung-Yu Huang [aut],
Xianghua Luo [aut]
Maintainer: Sandra Castro-Pearson <cast0135@umn.edu>
Diff between BivRec versions 1.2.0 dated 2020-01-14 and 1.2.1 dated 2021-06-05
DESCRIPTION | 12 +-- MD5 | 73 +++++++++++----------- NAMESPACE | 104 ++++++++++++++++---------------- NEWS.md | 8 ++ R/BivRec.R | 6 - R/basicplot.R | 8 +- R/biv.rec.fit.R | 4 - R/biv.rec.np.R | 2 R/biv.rec.sim.R | 2 R/bivrecNP.R | 19 +++-- R/bivrecReg.R | 12 --- R/nonparam_conditional.R | 35 +++------- R/plotBy.R | 21 +++--- R/plot_bivrecNP.R | 10 --- R/plot_bivrecSurv.R | 14 +--- R/simulate.R | 2 README.md | 39 ++++++------ build |only man/BivRec-package.Rd | 6 - man/biv.rec.fit.Rd | 4 - man/biv.rec.np.Rd | 2 man/biv.rec.sim.Rd | 2 man/bivrecNP.Rd | 4 - man/bivrecReg.Rd | 12 --- man/coef.bivrecReg.Rd | 30 ++++----- man/figures/README-BivRecExample-1.png |binary man/figures/README-BivRecExample2-1.png |binary man/figures/README-BivRecExample2-2.png |binary man/figures/README-BivRecExample3-1.png |binary man/plot.bivrecSurv.Rd | 14 ++++ man/plotJoint.Rd | 30 ++++----- man/plotMarg.Rd | 30 ++++----- man/print.bivrecNP.Rd | 30 ++++----- man/print.bivrecReg.Rd | 30 ++++----- man/print.summary.bivrecReg.Rd | 30 ++++----- man/simBivRec.Rd | 2 man/summary.bivrecReg.Rd | 30 ++++----- man/vcov.bivrecReg.Rd | 30 ++++----- 38 files changed, 323 insertions(+), 334 deletions(-)