Title: Header-Only C++ Mathematical Optimization Library for
'Armadillo'
Description: 'Ensmallen' is a templated C++ mathematical optimization library
(by the 'MLPACK' team) that provides a simple set of abstractions for writing an
objective function to optimize. Provided within are various standard and
cutting-edge optimizers that include full-batch gradient descent techniques,
small-batch techniques, gradient-free optimizers, and constrained optimization.
The 'RcppEnsmallen' package includes the header files from the 'Ensmallen' library
and pairs the appropriate header files from 'armadillo' through the
'RcppArmadillo' package. Therefore, users do not need to install 'Ensmallen' nor
'Armadillo' to use 'RcppEnsmallen'. Note that 'Ensmallen' is licensed under
3-Clause BSD, 'Armadillo' starting from 7.800.0 is licensed under Apache License 2,
'RcppArmadillo' (the 'Rcpp' bindings/bridge to 'Armadillo') is licensed under
the GNU GPL version 2 or later. Thus, 'RcppEnsmallen' is also licensed under
similar terms. Note that 'Ensmallen' requires a compiler that supports
'C++11' and 'Armadillo' 8.400 or later.
Author: James Joseph Balamuta [aut, cre, cph]
(<https://orcid.org/0000-0003-2826-8458>),
Dirk Eddelbuettel [aut, cph] (<https://orcid.org/0000-0001-6419-907X>)
Maintainer: James Joseph Balamuta <balamut2@illinois.edu>
Diff between RcppEnsmallen versions 0.2.16.1.1 dated 2021-03-05 and 0.2.17.0.1 dated 2021-07-06
ChangeLog | 14 DESCRIPTION | 7 MD5 | 114 ++--- NEWS.md | 83 ++- build/vignette.rds |binary inst/doc/using-rcppensmallen.html | 228 ---------- inst/include/ensmallen.hpp | 4 inst/include/ensmallen_bits/callbacks/callbacks.hpp | 108 ++++ inst/include/ensmallen_bits/callbacks/query_front.hpp |only inst/include/ensmallen_bits/callbacks/traits.hpp | 65 ++ inst/include/ensmallen_bits/cmaes/cmaes.hpp | 4 inst/include/ensmallen_bits/ens_version.hpp | 10 inst/include/ensmallen_bits/function/static_checks.hpp | 19 inst/include/ensmallen_bits/fw/proximal/proximal_impl.hpp | 2 inst/include/ensmallen_bits/moead |only inst/include/ensmallen_bits/nsga2/nsga2.hpp | 79 ++- inst/include/ensmallen_bits/nsga2/nsga2_impl.hpp | 206 +++++---- inst/include/ensmallen_bits/problems/ackley_function.hpp | 27 - inst/include/ensmallen_bits/problems/beale_function.hpp | 27 - inst/include/ensmallen_bits/problems/booth_function.hpp | 27 - inst/include/ensmallen_bits/problems/bukin_function.hpp | 27 - inst/include/ensmallen_bits/problems/colville_function.hpp | 27 - inst/include/ensmallen_bits/problems/cross_in_tray_function.hpp | 12 inst/include/ensmallen_bits/problems/drop_wave_function.hpp | 27 - inst/include/ensmallen_bits/problems/easom_function.hpp | 27 - inst/include/ensmallen_bits/problems/eggholder_function.hpp | 27 - inst/include/ensmallen_bits/problems/fonseca_fleming_function.hpp | 5 inst/include/ensmallen_bits/problems/generalized_rosenbrock_function.hpp | 39 - inst/include/ensmallen_bits/problems/goldstein_price_function.hpp | 27 - inst/include/ensmallen_bits/problems/gradient_descent_test_function.hpp | 21 inst/include/ensmallen_bits/problems/levy_function_n13.hpp | 27 - inst/include/ensmallen_bits/problems/matyas_function.hpp | 27 - inst/include/ensmallen_bits/problems/mc_cormick_function.hpp | 27 - inst/include/ensmallen_bits/problems/problems.hpp | 5 inst/include/ensmallen_bits/problems/rastrigin_function.hpp | 40 + inst/include/ensmallen_bits/problems/rosenbrock_function.hpp | 27 - inst/include/ensmallen_bits/problems/rosenbrock_wood_function.hpp | 39 - inst/include/ensmallen_bits/problems/schaffer_function_n1.hpp | 5 inst/include/ensmallen_bits/problems/schaffer_function_n2.hpp | 27 - inst/include/ensmallen_bits/problems/schwefel_function.hpp | 44 + inst/include/ensmallen_bits/problems/sgd_test_function.hpp | 27 - inst/include/ensmallen_bits/problems/sparse_test_function.hpp | 27 - inst/include/ensmallen_bits/problems/sphere_function.hpp | 39 - inst/include/ensmallen_bits/problems/styblinski_tang_function.hpp | 45 + inst/include/ensmallen_bits/problems/three_hump_camel_function.hpp | 27 - inst/include/ensmallen_bits/problems/wood_function.hpp | 27 - inst/include/ensmallen_bits/problems/zdt |only inst/include/ensmallen_bits/pso/update_policies/lbest_update.hpp | 3 inst/include/ensmallen_bits/sa/sa_impl.hpp | 2 inst/include/ensmallen_bits/sarah/sarah_impl.hpp | 5 inst/include/ensmallen_bits/sdp/primal_dual_impl.hpp | 6 inst/include/ensmallen_bits/sgdr/snapshot_ensembles.hpp | 1 inst/include/ensmallen_bits/spalera_sgd/spalera_stepsize.hpp | 3 inst/include/ensmallen_bits/utility/indicators |only 54 files changed, 1030 insertions(+), 713 deletions(-)
Title: Ensemble of Phalanxes
Description: An ensemble method for the statistical detection of
a rare class in two-class classification problems. The method uses an
ensemble of classifiers where the constituent
models of the ensemble use disjoint subsets (phalanxes) of explanatory
variables. We provide an implementation of the phalanx-formation algorithm.
Please see Tomal et al. (2015) <doi:10.1214/14-AOAS778>,
Tomal et al. (2016) <doi:10.1021/acs.jcim.5b00663>, and
Tomal et al. (2019) <arXiv:1706.06971> for more details.
Author: Jabed Tomal [aut, cre],
Grace Hsu [aut],
William Welch [aut],
Marcia Wang [ctb]
Maintainer: Jabed Tomal <jtomal@tru.ca>
Diff between EPX versions 1.0.3 dated 2020-09-20 and 1.0.4 dated 2021-07-06
EPX-1.0.3/EPX/inst/doc/EPX_2020.Rnw |only EPX-1.0.3/EPX/inst/doc/EPX_2020.pdf |only EPX-1.0.3/EPX/vignettes/EPX_2020.Rnw |only EPX-1.0.3/EPX/vignettes/Tomal2020EPX.pdf |only EPX-1.0.4/EPX/DESCRIPTION | 6 +++--- EPX-1.0.4/EPX/MD5 | 14 +++++++------- EPX-1.0.4/EPX/build/partial.rdb |binary EPX-1.0.4/EPX/build/vignette.rds |binary EPX-1.0.4/EPX/inst/doc/EPX_2021.Rnw |only EPX-1.0.4/EPX/inst/doc/EPX_2021.pdf |only EPX-1.0.4/EPX/vignettes/EPX_2021.Rnw |only EPX-1.0.4/EPX/vignettes/Tomal2021EPX.pdf |only 12 files changed, 10 insertions(+), 10 deletions(-)
Title: Drug Identification and Drug Name Correction with Automatic
Updates
Description: Contains a function which identifies and corrects the names of a set of drugs between clinical phases 1-4 with a periodically actualized drug database.
Author: Fernando Carazo [aut, cre],
Javier Garcia [aut],
Tecnun [cph]
Maintainer: Fernando Carazo <fcarazo@tecnun.es>
Diff between drughelper versions 0.1.0 dated 2021-06-17 and 0.2.0 dated 2021-07-06
drughelper-0.1.0/drughelper/data/singleDrugSynonymsChembl.rda |only drughelper-0.1.0/drughelper/man/open-curly-package-close.Rd |only drughelper-0.1.0/drughelper/man/singleDrugSynonymsChembl.Rd |only drughelper-0.2.0/drughelper/DESCRIPTION | 19 +- drughelper-0.2.0/drughelper/MD5 | 33 ++-- drughelper-0.2.0/drughelper/R/AuxFunctions.R | 31 ---- drughelper-0.2.0/drughelper/R/checkDrugSynonym.R | 15 + drughelper-0.2.0/drughelper/R/downloadAbsentFile.R | 6 drughelper-0.2.0/drughelper/R/drughelper-package.R | 3 drughelper-0.2.0/drughelper/README.md | 8 - drughelper-0.2.0/drughelper/data/drugResponse.rda |only drughelper-0.2.0/drughelper/data/geneInfo.rda |only drughelper-0.2.0/drughelper/inst/doc/drughelperVignette.R | 44 ++++- drughelper-0.2.0/drughelper/inst/doc/drughelperVignette.Rmd | 68 +++++++- drughelper-0.2.0/drughelper/inst/doc/drughelperVignette.html | 77 +++++++--- drughelper-0.2.0/drughelper/inst/unitTests/test_checkDrugSynonym.R | 1 drughelper-0.2.0/drughelper/man/Drug_Response.Rd |only drughelper-0.2.0/drughelper/man/Gene_Info.Rd |only drughelper-0.2.0/drughelper/man/InternalFunctions.Rd | 4 drughelper-0.2.0/drughelper/man/open-curly-drughelper-close.Rd |only drughelper-0.2.0/drughelper/vignettes/drughelperVignette.Rmd | 68 +++++++- drughelper-0.2.0/drughelper/vignettes/table_cases.png |only 22 files changed, 259 insertions(+), 118 deletions(-)
Title: Automatic Structural Time Series Models
Description: Automatic model selection for structural time series decomposition into trend, cycle, and seasonal components using the Kalman filter.
Koopman, Siem Jan and Marius Ooms (2012) "Forecasting Economic Time Series Using Unobserved Components Time Series Models" <doi:10.1093/oxfordhb/9780195398649.013.0006>.
Kim, Chang-Jin and Charles R. Nelson (1999) "State-Space Models with Regime Switching: Classical and Gibbs-Sampling Approaches with Applications" <doi:10.7551/mitpress/6444.001.0001><http://econ.korea.ac.kr/~cjkim/>.
Author: Alex Hubbard
Maintainer: Alex Hubbard <hubbard.alex@gmail.com>
Diff between autostsm versions 1.4 dated 2021-06-09 and 1.5 dated 2021-07-06
autostsm-1.4/autostsm/R/stsm_init_vals.R |only autostsm-1.4/autostsm/man/stsm_init_vals.Rd |only autostsm-1.5/autostsm/DESCRIPTION | 16 autostsm-1.5/autostsm/MD5 | 46 - autostsm-1.5/autostsm/R/stsm_constraints.R | 30 autostsm-1.5/autostsm/R/stsm_detect_anomalies.R | 42 - autostsm-1.5/autostsm/R/stsm_detect_breaks.R | 81 + autostsm-1.5/autostsm/R/stsm_detect_cycle.R | 12 autostsm-1.5/autostsm/R/stsm_detect_multiplicative.R | 39 autostsm-1.5/autostsm/R/stsm_detect_seasonality.R | 14 autostsm-1.5/autostsm/R/stsm_detect_trend.R | 21 autostsm-1.5/autostsm/R/stsm_estimate.R | 125 --- autostsm-1.5/autostsm/R/stsm_fixed_par.R |only autostsm-1.5/autostsm/R/stsm_forecast.R | 53 - autostsm-1.5/autostsm/R/stsm_init_pars.R | 16 autostsm-1.5/autostsm/R/stsm_na_kalman.R |only autostsm-1.5/autostsm/R/stsm_prior.R | 31 autostsm-1.5/autostsm/R/stsm_ssm.R | 70 + autostsm-1.5/autostsm/R/stsm_stat_tests.R |only autostsm-1.5/autostsm/inst/doc/autostsm_vignette.Rmd | 75 - autostsm-1.5/autostsm/inst/doc/autostsm_vignette.html | 649 +++++----------- autostsm-1.5/autostsm/man/stsm_coxstuart.Rd |only autostsm-1.5/autostsm/man/stsm_detect_multiplicative.Rd | 72 - autostsm-1.5/autostsm/man/stsm_fixed_pars.Rd |only autostsm-1.5/autostsm/man/stsm_init_pars.Rd | 77 - autostsm-1.5/autostsm/man/stsm_na_kalman.Rd |only autostsm-1.5/autostsm/man/stsm_ssm.Rd | 14 autostsm-1.5/autostsm/vignettes/autostsm_vignette.Rmd | 75 - 28 files changed, 676 insertions(+), 882 deletions(-)
Title: An Open-Source Loader for Bruker's timsTOF Data Files
Description: A free, open-source package designed for
handling .tdf data files produced by Bruker's 'timsTOF' mass
spectrometers.
Fast, free, crossplatform, with no reading through
EULAs or messing with binary .dll files involved.
Author: Michał Piotr Startek [aut, cre, cph]
(<https://orcid.org/0000-0001-5227-3447>),
Mateusz Krzysztof Łącki [aut, cph]
(<https://orcid.org/0000-0001-7415-4748>)
Maintainer: Michał Piotr Startek <michal.startek@mimuw.edu.pl>
Diff between opentimsr versions 1.0.5 dated 2021-03-10 and 1.0.7 dated 2021-07-06
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ src/opentims.cpp | 14 ++++++++++++-- src/opentimsr_types.h | 4 +++- src/scan2inv_ion_mobility_converter.h | 5 +++-- src/so_manager.h | 2 +- src/tof2mz_converter.h | 5 +++-- 7 files changed, 32 insertions(+), 18 deletions(-)
Title: Pacote Para Analise Multivariada
Description: Package with multivariate analysis methodologies for experiment evaluation.
The package estimates dissimilarity measures, builds dendrograms, obtains MANOVA,
principal components, canonical variables, etc. (Pacote com metodologias de analise
multivariada para avaliação de experimentos. O pacote estima medidas de dissimilaridade,
construi de dendogramas, obtem a MANOVA, componentes principais, variáveis canônicas, etc.)
Author: Alcinei Mistico Azevedo [aut, cre]
(<https://orcid.org/0000-0001-5196-0851>)
Maintainer: Alcinei Mistico Azevedo <alcineimistico@hotmail.com>
Diff between MultivariateAnalysis versions 0.1.0 dated 2021-06-28 and 0.1.1 dated 2021-07-06
DESCRIPTION | 8 +- MD5 | 35 +++++----- NAMESPACE | 2 NEWS.md |only R/Dados.BIN.R | 8 +- R/Dados.Misto.R |only R/Distancia.R | 155 ++++++++++++++++++++++++++++++++++++++++++++-- R/MANOVA.R | 9 +- R/Tocher.R | 3 R/VariaveisCanonicas.R | 34 +++++++--- R/VariaveisCanonicas2.R | 90 +++++++++++++++++++++----- R/zzz.R |only data/Dados.BIN.txt | 13 +-- data/Dados.Fat2.DBC.txt | 136 ++++++++++++++++++++++++++++------------ data/Dados.Misto.txt |only man/Dados.BIN.Rd | 7 +- man/Dados.Misto.Rd |only man/Distancia.Rd | 34 ++++++++-- man/MANOVA.Rd | 9 +- man/Tocher.Rd | 3 man/VariaveisCanonicas.Rd | 29 ++++++-- 21 files changed, 448 insertions(+), 127 deletions(-)
More information about MultivariateAnalysis at CRAN
Permanent link
Title: Logic Regression
Description: Routines for fitting Logic Regression models. Logic Regression is described
in Ruczinski, Kooperberg, and LeBlanc (2003) <DOI:10.1198/1061860032238>. Monte
Carlo Logic Regression is described in and Kooperberg and Ruczinski (2005)
<DOI:10.1002/gepi.20042>.
Author: Charles Kooperberg <clk@fredhutch.org> and Ingo Ruczinski <ingo@jhu.edu>
Maintainer: Charles Kooperberg <clk@fredhutch.org>
Diff between LogicReg versions 1.6.2 dated 2019-12-07 and 1.6.4 dated 2021-07-06
DESCRIPTION | 8 ++++---- MD5 | 5 +++-- src/sextra.f |only src/slogic.f | 41 ++++++++++++++++++++++++++++++++--------- 4 files changed, 39 insertions(+), 15 deletions(-)
Title: Extend 'tinytest' with 'diffobj'
Description: The 'tinytest' package offers a light-weight zero-dependency unit-testing
framework to which this package adds support of the 'diffobj' package for 'diff'-style
comparison of R objects.
Author: Dirk Eddelbuettel and Alton Barbehenn
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between ttdo versions 0.0.6 dated 2020-07-28 and 0.0.7 dated 2021-07-06
ChangeLog | 20 +++++++++++++++++++- DESCRIPTION | 14 ++++++++------ MD5 | 12 ++++++------ R/expectations_xl.R | 11 ++++++----- R/methods.R | 2 +- README.md | 1 + inst/NEWS.Rd | 17 +++++++++++++++++ 7 files changed, 58 insertions(+), 19 deletions(-)
Title: Generalized Random Forests
Description: A pluggable package for forest-based statistical estimation and inference.
GRF currently provides methods for non-parametric least-squares regression,
quantile regression, survival regression and treatment effect estimation (optionally using instrumental
variables), with support for missing values.
Author: Julie Tibshirani [aut, cre],
Susan Athey [aut],
Rina Friedberg [ctb],
Vitor Hadad [ctb],
David Hirshberg [ctb],
Luke Miner [ctb],
Erik Sverdrup [aut],
Stefan Wager [aut],
Marvin Wright [ctb]
Maintainer: Julie Tibshirani <jtibs@cs.stanford.edu>
Diff between grf versions 2.0.0 dated 2021-06-22 and 2.0.1 dated 2021-07-06
grf-2.0.0/grf/tests/testthat/data |only grf-2.0.1/grf/DESCRIPTION | 8 ++++---- grf-2.0.1/grf/MD5 | 6 +----- 3 files changed, 5 insertions(+), 9 deletions(-)
Title: Lightweight and Feature Complete Unit Testing Framework
Description: Provides a lightweight (zero-dependency) and easy to use
unit testing framework. Main features: install tests with
the package. Test results are treated as data that can be stored and
manipulated. Test files are R scripts interspersed with test commands, that
can be programmed over. Fully automated build-install-test sequence for
packages. Skip tests when not run locally (e.g. on CRAN). Flexible and
configurable output printing. Compare computed output with output stored
with the package. Run tests in parallel. Extensible by other packages.
Report side effects.
Author: Mark van der Loo [aut, cre] (<https://orcid.org/0000-0002-9807-4686>)
Maintainer: Mark van der Loo <mark.vanderloo@gmail.com>
Diff between tinytest versions 1.2.4 dated 2020-12-17 and 1.3.1 dated 2021-07-06
DESCRIPTION | 8 +- MD5 | 37 +++++---- NEWS | 30 +++++++ R/expectations.R | 148 ++++++++++++++++++++++++++++++--------- R/tinytest.R | 58 ++++++++++++--- R/utils.R | 22 +++++ README.md | 4 - build/vignette.rds |binary inst/doc/tinytest_examples.pdf |binary inst/doc/using_tinytest.R | 48 ++++++------ inst/doc/using_tinytest.Rnw | 11 +- inst/doc/using_tinytest.pdf |binary inst/rstudio |only inst/tinytest/runs/test_locale.R |only inst/tinytest/test_file.R | 6 + inst/tinytest/test_gh_issue_86.R |only man/expect_equal.Rd | 18 +++- man/expect_equal_to_reference.Rd | 6 + man/report_side_effects.Rd | 10 +- man/tinytest.Rd | 3 vignettes/using_tinytest.Rnw | 11 +- 21 files changed, 310 insertions(+), 110 deletions(-)
Title: Predicting Totals and Weighted Sums from Spatial Data
Description: Performs predictions of totals and weighted sums, or finite population block kriging, on spatial data using the methods in Ver Hoef (2008) <doi:10.1007/s10651-007-0035-y>. The primary outputs are an estimate of the total, mean, or weighted sum in the region, an estimated prediction variance, and a plot of the predicted and observed values. This is useful primarily to users with ecological data that are counts or densities measured on some sites in a finite area of interest. Spatial prediction for the total count or average density in the entire region can then be done using the functions in this package.
Author: Higham Matt [cre, aut],
Ver Hoef Jay [aut],
Frank Bryce [aut],
Michael Dumelle [aut] (<https://orcid.org/0000-0002-3393-5529>)
Maintainer: Higham Matt <mhigham@stlawu.edu>
Diff between sptotal versions 0.1.0 dated 2020-07-01 and 1.0.0 dated 2021-07-06
sptotal-0.1.0/sptotal/R/LLtoUTM.R |only sptotal-0.1.0/sptotal/R/check.variogram.R |only sptotal-0.1.0/sptotal/R/get.predinfo.R |only sptotal-0.1.0/sptotal/R/get.predplot.r |only sptotal-0.1.0/sptotal/man/check.variogram.Rd |only sptotal-0.1.0/sptotal/man/get.predinfo.Rd |only sptotal-0.1.0/sptotal/man/get.predplot.Rd |only sptotal-1.0.0/sptotal/DESCRIPTION | 23 sptotal-1.0.0/sptotal/MD5 | 88 - sptotal-1.0.0/sptotal/NAMESPACE | 10 sptotal-1.0.0/sptotal/NEWS.md |only sptotal-1.0.0/sptotal/R/LLtoTM.R |only sptotal-1.0.0/sptotal/R/data.R | 4 sptotal-1.0.0/sptotal/R/deprecated-check.variogram.R |only sptotal-1.0.0/sptotal/R/deprecated-get.predinfo.R |only sptotal-1.0.0/sptotal/R/deprecated-get.predplot.r |only sptotal-1.0.0/sptotal/R/fitted.slmfit.R |only sptotal-1.0.0/sptotal/R/geostatSim.R | 2 sptotal-1.0.0/sptotal/R/logLik.slmfit.R | 2 sptotal-1.0.0/sptotal/R/plot.predict.slmfit.R |only sptotal-1.0.0/sptotal/R/plot.slmfit.R |only sptotal-1.0.0/sptotal/R/predict.slmfit.R | 54 sptotal-1.0.0/sptotal/R/predict.stratafit.R |only sptotal-1.0.0/sptotal/R/print.predict.slmfit.R |only sptotal-1.0.0/sptotal/R/print.predict.stratafit.R |only sptotal-1.0.0/sptotal/R/print.summary.slmfit.R | 42 sptotal-1.0.0/sptotal/R/residuals.slmfit.R | 65 - sptotal-1.0.0/sptotal/R/slmfit.R | 444 ++++--- sptotal-1.0.0/sptotal/R/sptotal.R | 8 sptotal-1.0.0/sptotal/R/stratafit.R |only sptotal-1.0.0/sptotal/R/summary.stratafit.R |only sptotal-1.0.0/sptotal/R/sv.R |only sptotal-1.0.0/sptotal/README.md | 32 sptotal-1.0.0/sptotal/build/vignette.rds |binary sptotal-1.0.0/sptotal/inst/doc/sptotal-vignette.R | 100 + sptotal-1.0.0/sptotal/inst/doc/sptotal-vignette.Rmd | 194 +-- sptotal-1.0.0/sptotal/inst/doc/sptotal-vignette.html | 941 ++++++++-------- sptotal-1.0.0/sptotal/man/LLtoTM.Rd | 7 sptotal-1.0.0/sptotal/man/USlakes.Rd | 2 sptotal-1.0.0/sptotal/man/check.variogram-deprecated.Rd |only sptotal-1.0.0/sptotal/man/fitted.slmfit.Rd |only sptotal-1.0.0/sptotal/man/geostatSim.Rd | 2 sptotal-1.0.0/sptotal/man/get.predinfo-deprecated.Rd |only sptotal-1.0.0/sptotal/man/get.predplot-deprecated.Rd |only sptotal-1.0.0/sptotal/man/loglik.slmfit.Rd | 2 sptotal-1.0.0/sptotal/man/plot.predict.slmfit.Rd |only sptotal-1.0.0/sptotal/man/plot.slmfit.Rd |only sptotal-1.0.0/sptotal/man/predict.slmfit.Rd | 17 sptotal-1.0.0/sptotal/man/predict.stratafit.Rd |only sptotal-1.0.0/sptotal/man/print.predict.slmfit.Rd |only sptotal-1.0.0/sptotal/man/print.predict.stratafit.Rd |only sptotal-1.0.0/sptotal/man/print.slmfit.Rd |only sptotal-1.0.0/sptotal/man/print.summary.slmfit.Rd | 3 sptotal-1.0.0/sptotal/man/residuals.slmfit.Rd | 4 sptotal-1.0.0/sptotal/man/simdata.Rd | 2 sptotal-1.0.0/sptotal/man/slmfit.Rd | 17 sptotal-1.0.0/sptotal/man/sptotal.Rd | 8 sptotal-1.0.0/sptotal/man/stratafit.Rd |only sptotal-1.0.0/sptotal/man/summary.stratafit.Rd |only sptotal-1.0.0/sptotal/man/sv.Rd |only sptotal-1.0.0/sptotal/tests/testthat/test_fpbk.R | 29 sptotal-1.0.0/sptotal/vignettes/sptotal-vignette.Rmd | 194 +-- 62 files changed, 1367 insertions(+), 929 deletions(-)
Title: Penalized Cox Proportional Hazard Model for Time-Dependent
Covariates
Description: Fits penalized models for both time-independent and time-dependent survival data. It fully implements elastic net and uses proximal gradient descent to solve the optimization problem. The package is an implementation of Steve Cygu and Benjamin M. Bolker. (2021) <arXiv:2102.02297>.
Author: Bicko Cygu [aut, cre] (<https://orcid.org/0000-0002-9284-8863>),
Ben Bolker [aut] (<https://orcid.org/0000-0002-2127-0443>)
Maintainer: Bicko Cygu <cygubicko@gmail.com>
Diff between pcoxtime versions 1.0.1 dated 2021-03-28 and 1.0.2 dated 2021-07-06
DESCRIPTION | 6 +- MD5 | 45 +++++++++-------- NAMESPACE | 11 ++-- R/helperfuns.R | 6 +- R/methodfuns.R | 103 +++++++++++++++++++++++++++++++-------- R/pcoxsim.R | 14 ++--- R/pcoxtime.R | 11 ++-- R/pcoxtimecv.R | 54 +++++++++++--------- R/pcoxtimeplots.R | 27 ++++------ R/posthocfuns.R | 94 ++++++++++++++++++++++------------- man/coef.pcoxtimecv.Rd |only man/concordScore.pcoxtime.Rd | 4 - man/extractoptimal.pcoxtimecv.Rd |only man/pcoxtime.Rd | 4 - man/pcoxtimecv.Rd | 6 +- man/plot.pcoxtimecv.Rd | 8 ++- man/predictRisk.pcoxtime.Rd | 4 - man/predictSurvProb.pcoxtime.Rd | 4 - man/predictedHazard.Rd | 2 man/print.pcoxbasehaz.Rd |only man/print.pcoxtime.Rd | 2 man/riskset.Rd | 4 - man/simtdc.Rd | 6 +- src/RcppExports.cpp | 16 +++--- src/helperfuns.cpp | 40 +++++++-------- 25 files changed, 292 insertions(+), 179 deletions(-)
Title: A Lightweight, Modern and Flexible Logging Utility
Description: Inspired by the the 'futile.logger' R package and 'logging' Python module, this utility provides a flexible and extensible way of formatting and delivering log messages with low overhead.
Author: Gergely Daróczi [aut, cre] (<https://orcid.org/0000-0003-3149-8537>),
System1 [fnd]
Maintainer: Gergely Daróczi <daroczig@rapporter.net>
Diff between logger versions 0.2.0 dated 2021-03-04 and 0.2.1 dated 2021-07-06
DESCRIPTION | 16 - MD5 | 36 +-- NAMESPACE | 1 NEWS.md | 6 R/appenders.R | 18 + R/hooks.R | 7 R/logger.R | 2 R/utils.R | 14 + inst/doc/Intro.html | 16 - inst/doc/anatomy.html | 6 inst/doc/customize_logger.Rmd | 1 inst/doc/customize_logger.html | 374 ++++++++++++++++++++--------------------- inst/doc/migration.html | 46 ++--- man/appender_async.Rd | 2 man/appender_tee.Rd | 16 + man/fail_on_missing_package.Rd | 4 man/log_shiny_input_changes.Rd | 7 tests/testthat/test-utils.R | 2 vignettes/customize_logger.Rmd | 1 19 files changed, 309 insertions(+), 266 deletions(-)
Title: Modelling of Population Growth
Description: Modelling of population growth under static and dynamic environmental conditions.
Includes functions for model fitting and making prediction under isothermal and
dynamic conditions. The methods (algorithms & models) are based on
predictive microbiology (See Perez-Rodriguez and Valero (2012, ISBN:978-1-4614-5519-6)).
Author: Alberto Garre [aut, cre] (<https://orcid.org/0000-0002-4404-3550>),
Jeroen Koomen [aut],
Heidy den Besten [aut],
Marcel Zwietering [aut]
Maintainer: Alberto Garre <garre.alberto@gmail.com>
Diff between biogrowth versions 0.2.1 dated 2021-06-22 and 0.2.2 dated 2021-07-06
DESCRIPTION | 6 +++--- MD5 | 16 ++++++++-------- NEWS.md | 5 +++++ R/predict_isothermal_growth.R | 2 ++ inst/doc/biogrowth_basics.R | 4 +++- inst/doc/biogrowth_basics.Rmd | 6 ++++-- inst/doc/biogrowth_basics.html | 14 ++++++++------ man/iso_repGompertz.Rd | 2 ++ vignettes/biogrowth_basics.Rmd | 6 ++++-- 9 files changed, 39 insertions(+), 22 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-09-11 1.2.1.1
2017-12-12 1.2.1
2017-11-10 1.2.0
2015-11-18 1.1.21
2015-03-20 1.1.19
2014-01-17 1.1.17
2013-09-24 1.1.16
2013-04-04 1.1.14
2013-01-21 1.1.13
2013-01-08 1.1.12
Title: Data Modification and Analysis for Communication Research
Description: Provides convenience functions for common data
modification and analysis tasks in communication research. This
includes functions for univariate and bivariate data analysis, index
generation and reliability computation, and intercoder reliability
tests. All functions follow the style and syntax of the tidyverse, and
are construed to perform their computations on multiple variables at
once. Functions for univariate and bivariate data analysis comprise
summary statistics for continuous and categorical variables, as well
as several tests of bivariate association including effect sizes.
Functions for data modification comprise index generation and
automated reliability analysis of index variables. Functions for
intercoder reliability comprise tests of several intercoder
reliability estimates, including simple and mean pairwise percent
agreement, Krippendorff's Alpha (Krippendorff 2004, ISBN:
9780761915454), and various Kappa coefficients (Brennan & Prediger
1981 <doi: 10.1177/001316448104100307>; Cohen 1960 <doi:
10.1177/001316446002000104>; Fleiss 1971 <doi: 10.1037/h0031619>).
Author: Julian Unkel [aut, cre] (<https://orcid.org/0000-0001-9568-7041>)
Maintainer: Julian Unkel <julian.unkel@gmail.com>
Diff between tidycomm versions 0.1.0 dated 2019-09-22 and 0.2.1 dated 2021-07-06
DESCRIPTION | 10 MD5 | 87 ++-- NAMESPACE | 1 NEWS.md |only R/add_index.R | 19 - R/describe.R | 62 +++ R/icr.R | 65 ++- R/icr_agreement.R | 14 R/icr_kappa.R | 2 R/icr_kripp_alpha.R | 4 R/icr_lotus.R |only R/unianova.R | 9 R/utils.R | 19 - README.md | 76 ++-- build/vignette.rds |binary inst/doc/v01_univariate.R | 39 +- inst/doc/v01_univariate.Rmd | 37 +- inst/doc/v01_univariate.html | 509 ++++++++++------------------ inst/doc/v02_bivariate.R | 34 - inst/doc/v02_bivariate.html | 614 ++++++++++++---------------------- inst/doc/v03_reliability.R | 16 inst/doc/v03_reliability.html | 399 ++++++---------------- inst/doc/v04_icr.R | 38 +- inst/doc/v04_icr.Rmd | 32 + inst/doc/v04_icr.html | 452 ++++++++----------------- man/WoJ.Rd | 106 ++--- man/add_index.Rd | 74 ++-- man/correlate.Rd | 62 +-- man/crosstab.Rd | 89 ++-- man/describe.Rd | 66 +-- man/describe_cat.Rd |only man/fbposts.Rd | 74 ++-- man/get_reliability.Rd | 99 ++--- man/t_test.Rd | 110 +++--- man/tab_frequencies.Rd | 59 +-- man/test_icr.Rd | 177 +++++---- man/to_correlation_matrix.Rd | 46 +- man/unianova.Rd | 78 ++-- tests/testthat/test-add_index.R | 10 tests/testthat/test-describe.R | 33 + tests/testthat/test-icr.R | 23 + tests/testthat/test-icr_agreement.R | 5 tests/testthat/test-icr_kripp_alpha.R | 8 tests/testthat/test-unianova.R | 9 vignettes/v01_univariate.Rmd | 37 +- vignettes/v04_icr.Rmd | 32 + 46 files changed, 1799 insertions(+), 1936 deletions(-)
Title: Evaluation of Surrogate Endpoints in Clinical Trials
Description: In a clinical trial, it frequently occurs that the most credible outcome to evaluate the effectiveness of a new therapy (the true endpoint) is difficult to measure. In such a situation, it can be an effective strategy to replace the true endpoint by a (bio)marker that is easier to measure and that allows for a prediction of the treatment effect on the true endpoint (a surrogate endpoint). The package 'Surrogate' allows for an evaluation of the appropriateness of a candidate surrogate endpoint based on the meta-analytic, information-theoretic, and causal-inference frameworks. Part of this software has been developed using funding provided from the European Union's Seventh Framework Programme for research, technological development and demonstration under Grant Agreement no 602552.
Author: Wim Van der Elst, Paul Meyvisch, Alvaro Florez Poveda, Ariel Alonso, Hannah M. Ensor, Christopher J. Weir & Geert Molenberghs
Maintainer: Wim Van der Elst <Wim.vanderelst@gmail.com>
Diff between Surrogate versions 1.8 dated 2020-12-13 and 1.9 dated 2021-07-06
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- NEWS | 3 ++- R/CausalDiagramBinBin.R | 27 ++++++++++++++++++++++++--- R/ISTE.ContCont.R | 2 +- R/summary_ICABinBin.R | 2 +- 6 files changed, 36 insertions(+), 14 deletions(-)
Title: Spatial Analysis of Field Trials with Splines
Description: Analysis of field trial experiments by modelling spatial trends using two-dimensional Penalised spline (P-spline) models.
Author: Maria Xose Rodriguez-Alvarez [aut, cre],
Martin Boer [aut],
Paul Eilers [aut],
Fred van Eeuwijk [ctb]
Maintainer: Maria Xose Rodriguez-Alvarez <mxrodriguez@bcamath.org>
Diff between SpATS versions 1.0-14 dated 2021-05-24 and 1.0-15 dated 2021-07-06
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- NEWS | 3 +++ R/construct.design.matrix.R | 2 +- R/construct.fixed.part.R | 20 ++++++++++++++++++-- R/construct.fixed.prediction.matrix.R | 10 ++++++++-- R/predict.SpATS.R | 10 +++++----- man/SpATS-package.Rd | 4 ++-- 8 files changed, 48 insertions(+), 23 deletions(-)
Title: Nonparametric Multiple Change Point Detection Using WBS
Description: Implements the procedure from G. J. Ross (2021) - "Nonparametric Detection of Multiple Location-Scale Change Points via Wild Binary Segmentation" <arxiv:2107.01742>. This uses a version of Wild Binary Segmentation to detect multiple location-scale (i.e. mean and/or variance) change points in a sequence of univariate observations, with a strict control on the probability of incorrectly detecting a change point in a sequence which does not contain any.
Author: Gordon J. Ross
Maintainer: Gordon J. Ross <gordon.ross@ed.ac.uk>
Diff between npwbs versions 0.1.0 dated 2021-07-02 and 0.2.0 dated 2021-07-06
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/sysdata.rda |binary inst/CITATION | 3 ++- man/detectChanges.Rd | 8 ++++---- 5 files changed, 14 insertions(+), 13 deletions(-)
Title: Multilevel Mediation Analysis
Description: Do multilevel mediation analysis with generalized additive multilevel models. The analysis method is described in Yu and Li (2020), "Third-Variable Effect Analysis with Multilevel Additive Models", PLoS ONE 15(10): e0241072.
Author: Qingzhao Yu, Bin Li
Maintainer: Qingzhao Yu <qyu@lsuhsc.edu>
Diff between mlma versions 6.0-1 dated 2021-01-04 and 6.1-1 dated 2021-07-06
DESCRIPTION | 10 MD5 | 12 - NAMESPACE | 2 R/mlma.r | 55 +++-- build/vignette.rds |binary inst/doc/MLMAvignette.R | 22 +- inst/doc/MLMAvignette.html | 485 +++++++++++++++++++++++++-------------------- 7 files changed, 336 insertions(+), 250 deletions(-)
Title: Bayesian and Classical Audit Sampling
Description: Implements the audit sampling workflow as discussed in Derks et al. (2019) <doi:10.31234/osf.io/9f6ub>. The package makes it easy for an auditor to plan a statistical sample, select the sample from the population, and evaluate the sample using various methods according to the International Standards on Auditing. Furthermore, the package implements Bayesian equivalents of these methods.
Author: Koen Derks [aut, cre] (<https://orcid.org/0000-0002-5533-9349>)
Maintainer: Koen Derks <k.derks@nyenrode.nl>
Diff between jfa versions 0.5.5 dated 2021-07-01 and 0.5.6 dated 2021-07-06
DESCRIPTION | 8 - MD5 | 28 ++-- NEWS.md | 6 R/jfa_methods.R | 2 README.md | 54 ++++++-- inst/CITATION | 4 inst/doc/v2_bayesian_sampling_workflow.html | 6 inst/doc/v3_prior_distributions.html | 14 +- man/jfa.Rd | 6 tests/testthat/test-consistency-auditBF.R | 4 tests/testthat/test-consistency-auditPrior.R | 11 + tests/testthat/test-consistency-evaluation.R | 9 + tests/testthat/test-consistency-planning.R | 9 + tests/testthat/test-consistency-selection.R | 9 + tests/testthat/test-consistency-statistical-tables.R | 120 +++++++++---------- 15 files changed, 180 insertions(+), 110 deletions(-)
Title: Miscellaneous Functions for the Analysis of Educational
Assessments
Description: Miscellaneous functions for data cleaning and data analysis of educational assessments. Includes functions for descriptive
analyses, character vector manipulations and weighted statistics. Mainly a lightweight dependency for the packages 'eatRep',
'eatGADS', 'eatPrep' and 'eatModel' (which will be subsequently submitted to 'CRAN').
The function for defining (weighted) contrasts in weighted effect coding refers to
te Grotenhuis et al. (2017) <doi:10.1007/s00038-016-0901-1>.
Functions for weighted statistics refer to
Wolter (2007) <doi:10.1007/978-0-387-35099-8>.
Author: Sebastian Weirich [aut, cre],
Martin Hecht [aut],
Karoline Sachse [aut],
Benjamin Becker [aut],
Nicole Mahler [aut]
Maintainer: Sebastian Weirich <sebastian.weirich@iqb.hu-berlin.de>
Diff between eatTools versions 0.5.0 dated 2021-02-09 and 0.6.0 dated 2021-07-06
DESCRIPTION | 10 +-- MD5 | 22 +++++--- NAMESPACE | 4 + NEWS.md | 7 ++ R/addLeadingZeros.R |only R/descr.r | 8 +-- R/readMultisep.R |only R/tablePattern.r | 6 +- man/addLeadingZeros.Rd |only man/readMultisep.Rd |only man/recodeLookup.rd | 50 +++++++++---------- man/wideToLong.rd | 124 ++++++++++++++++++++++++------------------------- man/wtdTable.rd | 64 ++++++++++++------------- man/wtdVar.rd | 70 +++++++++++++-------------- 14 files changed, 191 insertions(+), 174 deletions(-)
Title: Create Constraints for Small Test Assembly Problems
Description: Provides simple functions to create constraints for small test assembly problems
(e.g. van der Linden (2005, ISBN: 978-0-387-29054-6)) using sparse matrices. Currently,
'GLPK', 'lpSolve', 'Symphony', and 'Gurobi' are supported as solvers. The 'gurobi' package is not available from
any mainstream repository; see <https://www.gurobi.com/downloads/>.
Author: Benjamin Becker [aut, cre],
Dries Debeer [aut]
Maintainer: Benjamin Becker <b.becker@iqb.hu-berlin.de>
Diff between eatATA versions 0.11.2 dated 2021-05-02 and 1.0.0 dated 2021-07-06
DESCRIPTION | 9 - MD5 | 51 ++++--- NAMESPACE | 2 NEWS.md | 12 + R/acrossFormsConstraint.R |only R/autoItemValuesMinMax.R | 2 R/input_checks.R | 183 ++++++++++++++++++++++++--- R/itemCategoryConstraint.R | 5 R/itemUsageConstraint.R | 50 +++---- R/itemValuesConstraint.R | 46 ++++-- R/itemsPerFormConstraint.R | 32 +++- R/utils.R | 7 - build/eatATA.pdf |only build/vignette.rds |binary inst/CITATION |only inst/doc/minimal_example.html | 4 inst/doc/overview.Rmd | 37 ++++- inst/doc/overview.html | 41 ++++-- inst/doc/use_case_pilot_study.html | 4 man/acrossFormsConstraint.Rd |only man/itemUsageConstraint.Rd | 2 man/itemValuesConstraint.Rd | 16 ++ tests/testthat/test_acrossFormsConstraint.R |only tests/testthat/test_input_checks.R | 102 +++++++++++---- tests/testthat/test_itemCategoryConstraint.R | 5 tests/testthat/test_itemUsageConstraint.R | 18 -- tests/testthat/test_itemValuesConstraint.R | 13 + tests/testthat/test_itemsPerFormConstraint.R | 4 vignettes/overview.Rmd | 37 ++++- 29 files changed, 511 insertions(+), 171 deletions(-)
Title: Empirical Mode Decomposition for Cyclostratigraphy
Description: Tools to apply Ensemble Empirical Mode
Decomposition (EEMD) for cyclostratigraphy purposes. Mainly: a new
algorithm, extricate, that performs EEMD in seconds, a linear interpolation
algorithm using the greatest rational common divisor of depth or time,
different algorithms to compute instantaneous amplitude, frequency and
ratios of frequencies, and functions to verify and visualise the outputs.
The functions were developed during the CRASH project (Checking the
Reproducibility of Astrochronology in the Hauterivian). When using for
publication please cite Wouters, S., Da Silva, A.C. Crucifix, M., Sinnesael,
M., Zivanovic, M., Boulvain, F., Devleeschouwer, X., 2019, "Litholog
generation with the 'StratigrapheR' package and signal decomposition for
cyclostratigraphic purposes". Geophysical Research Abstracts Vol. 21,
EGU2019-5520, 2019, EGU General Assembly 2019.
<http://hdl.handle.net/2268/234402>.
Author: Sebastien Wouters [aut, cre]
Maintainer: Sebastien Wouters <sebastien.wouters@doct.uliege.be>
Diff between DecomposeR versions 1.0.3 dated 2020-11-03 and 1.0.4 dated 2021-07-06
DESCRIPTION | 12 ++--- MD5 | 48 +++++++++++++++-------- NAMESPACE | 8 +++ NEWS | 17 +++++++- R/DecomposeR.Datasets.R | 92 ++++++++++++++++++++++++++++++++++++++++++--- R/DecomposeR.R | 4 - R/approx.cor.R |only R/check.emd.R |only R/extricate.R | 24 +++++++---- R/pile.up.R | 6 ++ R/respace.R | 4 + R/simple.ssa.R |only build |only data/La04_ecc_6_8.rda |only data/La04_obl_6_8.rda |only data/La04_pre_0_20.rda |only data/La04_pre_obl_5_9.rda |only data/ace.rda |binary data/cip1.rda |binary data/cip1_input.rda |only data/cip1_raw.rda |binary data/cip2.rda |binary data/cip3.rda |binary data/sc97amp.rda |only data/w17.rda |only data/z13.rda |only data/z13amp.rda |only man/DecomposeR.Datasets.Rd | 61 +++++++++++++++++++++++++++-- man/DecomposeR.Rd | 2 man/approx.cor.Rd |only man/check.emd.Rd |only man/extricate.Rd | 12 ++--- man/simple.ssa.Rd |only 33 files changed, 237 insertions(+), 53 deletions(-)
Title: Blinded Sample Size Recalculation
Description: Computation of key characteristics and plots for blinded sample size recalculation.
Continuous as well as binary endpoints are supported in superiority and non-inferiority trials.
The implemented methods include the approaches by
Lu, K. (2019) <doi:10.1002/pst.1737>,
Kieser, M. and Friede, T. (2000) <doi:10.1002/(SICI)1097-0258(20000415)19:7%3C901::AID-SIM405%3E3.0.CO;2-L>,
Friede, T. and Kieser, M. (2004) <doi:10.1002/pst.140>,
Friede, T., Mitchell, C., Mueller-Veltern, G. (2007) <doi:10.1002/bimj.200610373>, and
Friede, T. and Kieser, M. (2011) <doi:10.3414/ME09-01-0063>.
Author: Lukas Baumann [aut, cre] (<https://orcid.org/0000-0001-7931-7470>),
Maximilian Pilz [aut] (<https://orcid.org/0000-0002-9685-1613>),
Institute of Medical Biometry and Informatics - University of
Heidelberg [cph]
Maintainer: Lukas Baumann <baumann@imbi.uni-heidelberg.de>
Diff between blindrecalc versions 0.1.2 dated 2020-05-11 and 0.1.3 dated 2021-07-06
DESCRIPTION | 25 LICENSE | 4 MD5 | 104 +-- NAMESPACE | 44 - R/ChiSquare.R | 725 +++++++++++------------ R/ChiSquare_helper.R | 110 +-- R/FarringtonManning.R | 721 +++++++++++----------- R/FarringtonManning_helper.R | 106 +-- R/RcppExports.R | 46 - R/Student.R | 658 ++++++++++---------- R/blindrecalc.R | 34 - R/methods.R | 292 ++++----- R/test_statistics.R | 418 ++++++++----- README.md | 98 ++- man/ChiSquare.Rd | 158 +++-- man/FarringtonManning.Rd | 136 ++-- man/Student.Rd | 165 ++--- man/adjusted_alpha.ChiSquare.Rd | 140 ++-- man/adjusted_alpha.FarringtonManning.Rd | 134 ++-- man/adjusted_alpha.Rd | 80 +- man/adjusted_alpha.Student.Rd | 98 +-- man/n_dist.ChiSquare.Rd | 122 +-- man/n_dist.FarringtonManning.Rd | 118 +-- man/n_dist.Rd | 93 +- man/n_dist.Student.Rd | 135 ++-- man/n_fix.ChiSquare.Rd | 88 +- man/n_fix.FarringtonManning.Rd | 72 +- man/n_fix.Rd | 70 +- man/n_fix.Student.Rd | 64 +- man/pow.ChiSquare.Rd | 104 +-- man/pow.FarringtonManning.Rd | 100 +-- man/pow.Rd | 84 +- man/pow.Student.Rd | 112 +-- man/simulation.Rd | 132 ++-- man/toer.ChiSquare.Rd | 104 +-- man/toer.FarringtonManning.Rd | 100 +-- man/toer.Rd | 82 +- man/toer.Student.Rd | 114 +-- tests/testthat.R | 8 tests/testthat/Rplots.pdf |binary tests/testthat/test_chisquare_adjalpha.R | 102 +-- tests/testthat/test_chisquare_ndist.R | 82 +- tests/testthat/test_chisquare_nfix.R | 70 +- tests/testthat/test_chisquare_pow.R | 241 ++++--- tests/testthat/test_chisquare_toer.R | 136 ++-- tests/testthat/test_farringtonmanning_adjalpha.R | 84 +- tests/testthat/test_farringtonmanning_ndist.R | 96 +-- tests/testthat/test_farringtonmanning_nfix.R | 90 +- tests/testthat/test_farringtonmanning_pow.R | 241 ++++--- tests/testthat/test_farringtonmanning_toer.R | 146 ++-- tests/testthat/test_restricted_ml.R | 22 tests/testthat/test_t_test.R | 365 +++++++---- tests/testthat/test_t_test_vectorization.R | 122 +-- 53 files changed, 4145 insertions(+), 3650 deletions(-)
Title: Landscape Metrics for Categorical Map Patterns
Description: Calculates landscape metrics for categorical landscape patterns in
a tidy workflow. 'landscapemetrics' reimplements the most common metrics from
'FRAGSTATS' (<https://www.umass.edu/landeco/research/fragstats/fragstats.html>)
and new ones from the current literature on landscape metrics.
This package supports 'raster' spatial objects and takes
RasterLayer, RasterStacks, RasterBricks or lists of RasterLayer from the
'raster' package as input arguments. It further provides utility functions
to visualize patches, select metrics and building blocks to develop new
metrics.
Author: Maximillian H.K. Hesselbarth [aut, cre]
(<https://orcid.org/0000-0003-1125-9918>),
Marco Sciaini [aut] (<https://orcid.org/0000-0002-3042-5435>),
Jakub Nowosad [aut] (<https://orcid.org/0000-0002-1057-3721>),
Sebastian Hanss [aut] (<https://orcid.org/0000-0002-3990-4897>),
Laura J. Graham [ctb] (Input on package structure),
Jeffrey Hollister [ctb] (Input on package structure),
Kimberly A. With [ctb] (Input on package structure),
Florian Privé [ctb] (Original author of underlying C++ code for
get_nearestneighbour() function),
Project Nayuki [ctb] (Original author of underlying C++ code for
get_circumscribingcircle and lsm_p_circle),
Matt Strimas-Mackey [ctb] (Bugfix in sample_metrics())
Maintainer: Maximillian H.K. Hesselbarth <mhk.hesselbarth@gmail.com>
Diff between landscapemetrics versions 1.5.2 dated 2021-02-04 and 1.5.3 dated 2021-07-06
DESCRIPTION | 12 - MD5 | 180 +++++++-------- NAMESPACE | 121 ---------- NEWS.md | 11 R/calculate_lsm.R | 264 ---------------------- R/check_landscape.R | 72 ------ R/extract_lsm.R | 198 ---------------- R/get_adjacencies.R | 95 ------- R/get_boundaries.R | 169 +------------- R/get_centroids.R | 133 ----------- R/get_circumscribingcircle.R | 111 --------- R/get_nearestneighbour.R | 75 ------ R/get_patches.R | 221 ++---------------- R/get_unique_values.R | 215 +---------------- R/landscape_as_list.R | 77 +++++- R/lsm_c_clumpy.R | 5 R/lsm_c_lsi.R | 6 R/lsm_c_nlsi.R | 6 R/lsm_c_np.R | 9 R/lsm_c_pladj.R | 6 R/lsm_c_te.R | 21 - R/lsm_l_contag.R | 2 R/lsm_l_lsi.R | 6 R/lsm_l_mesh.R | 2 R/lsm_l_msiei.R | 2 R/lsm_l_np.R | 3 R/lsm_l_pladj.R | 8 R/lsm_l_pr.R | 2 R/lsm_l_te.R | 8 R/lsm_p_area.R | 9 R/lsm_p_circle.R | 9 R/lsm_p_contig.R | 9 R/lsm_p_core.R | 9 R/lsm_p_enn.R | 7 R/lsm_p_gyrate.R | 7 R/lsm_p_ncore.R | 16 - R/lsm_p_perim.R | 17 - R/pad_raster.R | 223 ++---------------- R/raster_to_points.R | 76 ------ R/sample_lsm.R | 194 ---------------- R/scale_sample.R | 197 ---------------- R/scale_window.R | 181 --------------- R/show_cores.R | 144 ++---------- R/show_lsm.R | 157 +------------ R/show_patches.R | 107 +------- R/spatialize_lsm.R | 160 ------------- R/sysdata.rda |only R/unpad_raster.R | 193 ++-------------- R/window_lsm.R | 151 ------------ build/vignette.rds |binary data/lsm_abbreviations_names.rda |binary inst/doc/getstarted.html | 18 + man/calculate_lsm.Rd | 112 --------- man/check_landscape.Rd | 17 - man/extract_lsm.Rd | 75 ------ man/get_adjacencies.Rd | 20 - man/get_boundaries.Rd | 53 ---- man/get_centroids.Rd | 41 --- man/get_circumscribingcircle.Rd | 17 - man/get_nearestneighbour.Rd | 19 - man/get_patches.Rd | 50 ---- man/get_unique_values.Rd | 25 -- man/landscape_as_list.Rd |only man/pad_raster.Rd | 60 ----- man/raster_to_points.Rd | 17 - man/sample_lsm.Rd | 70 ----- man/scale_sample.Rd | 53 ---- man/scale_window.Rd | 60 ----- man/show_cores.Rd | 62 ----- man/show_lsm.Rd | 70 ----- man/show_patches.Rd | 45 --- man/spatialize_lsm.Rd | 70 ----- man/unpad_raster.Rd | 45 --- man/window_lsm.Rd | 57 ---- tests/testthat.R | 1 tests/testthat/helper-landscapes.R | 2 tests/testthat/test-calculate-lsm.R | 3 tests/testthat/test-get-boundaries.R | 11 tests/testthat/test-get-centroids.R | 2 tests/testthat/test-get-nearestneighbour.R | 5 tests/testthat/test-get-patches.R | 13 - tests/testthat/test-get-unique-values.R | 30 +- tests/testthat/test-landscape_as_list.R | 18 - tests/testthat/test-options-landscapemetrics.R | 2 tests/testthat/test-pad-raster.R | 33 +- tests/testthat/test-rcpp-get-coocurrence-matrix.R | 22 - tests/testthat/test-rcpp-get-entropy.R | 6 tests/testthat/test-rcpp_ccl.R | 8 tests/testthat/test-show-cores.R | 29 +- tests/testthat/test-show-lsm.R | 10 tests/testthat/test-show-patches.R | 12 - tests/testthat/test-unpad-raster.R | 70 +++-- 92 files changed, 687 insertions(+), 4552 deletions(-)
More information about landscapemetrics at CRAN
Permanent link
Title: Non-Negative Tensor Decomposition
Description: Some functions for performing non-negative matrix factorization, non-negative CANDECOMP/PARAFAC (CP) decomposition, non-negative Tucker decomposition, and generating toy model data. See Andrzej Cichock et al (2009) <doi:10.1002/9780470747278> and the reference section of GitHub README.md <https://github.com/rikenbit/nnTensor>, for details of the methods.
Author: Koki Tsuyuzaki [aut, cre],
Manabu Ishii [aut],
Itoshi Nikaido [aut]
Maintainer: Koki Tsuyuzaki <k.t.the-answer@hotmail.co.jp>
Diff between nnTensor versions 1.1.0 dated 2021-06-24 and 1.1.2 dated 2021-07-06
DESCRIPTION | 8 +- MD5 | 30 ++++---- R/NMF.R | 106 +++++++++++-------------------- R/NTD.R | 72 ++++++++------------- R/NTF.R | 57 +++++----------- R/jNMF.R | 61 +++++++---------- R/siNMF.R | 57 +++++++--------- build/partial.rdb |binary inst/NEWS | 6 + man/NMF.Rd | 5 + man/NTD.Rd | 5 + man/NTF.Rd | 6 + man/jNMF.Rd | 6 + man/siNMF.Rd | 5 + tests/testthat.R | 53 +++++++-------- tests/testthat/test_NMF_rankestimation.R | 53 +++++++++------ 16 files changed, 244 insertions(+), 286 deletions(-)
Title: Unbiased Estimators for Cumulant Products and Faa Di Bruno's
Formula
Description: Tools for estimate (joint) cumulants and (joint) products of cumulants of a random sample using (multivariate) k-statistics and (multivariate) polykays, unbiased estimators with minimum variance. Tools for generating univariate and multivariate Faa di Bruno's formula and related polynomials, such as Bell polynomials, generalized complete Bell polynomials, partition polynomials and generalized partition polynomials. For more details see Di Nardo E., Guarino G., Senato D. (2009) <arXiv:0807.5008>, <arXiv:1012.6008>.
Author: Elvira Di Nardo <elvira.dinardo@unito.it>, Giuseppe Guarino <giuseppe.guarino@rete.basilicata.it>
Maintainer: Giuseppe Guarino <giuseppe.guarino@rete.basilicata.it>
Diff between kStatistics versions 2.0 dated 2020-07-24 and 2.1 dated 2021-07-06
kStatistics-2.0/kStatistics/R/BellPol.R |only kStatistics-2.0/kStatistics/R/umSet.R |only kStatistics-2.0/kStatistics/man/BellPol.Rd |only kStatistics-2.0/kStatistics/man/umSet.Rd |only kStatistics-2.1/kStatistics/DESCRIPTION | 13 - kStatistics-2.1/kStatistics/MD5 | 132 ++++++------- kStatistics-2.1/kStatistics/R/GCBellPol.R | 9 kStatistics-2.1/kStatistics/R/MFB.R | 16 - kStatistics-2.1/kStatistics/R/MFB2Set.R | 2 kStatistics-2.1/kStatistics/R/Set2expr.R | 10 kStatistics-2.1/kStatistics/R/countP.R | 4 kStatistics-2.1/kStatistics/R/cum2mom.R | 8 kStatistics-2.1/kStatistics/R/eBellPol.R |only kStatistics-2.1/kStatistics/R/e_GCBellPol.R | 11 - kStatistics-2.1/kStatistics/R/e_MFB.R | 10 kStatistics-2.1/kStatistics/R/e_eBellPol.R |only kStatistics-2.1/kStatistics/R/ff.R | 3 kStatistics-2.1/kStatistics/R/gpPart.R | 14 - kStatistics-2.1/kStatistics/R/intPart.R | 9 kStatistics-2.1/kStatistics/R/list2Set.R | 2 kStatistics-2.1/kStatistics/R/list2m.R | 2 kStatistics-2.1/kStatistics/R/m2Set.R | 2 kStatistics-2.1/kStatistics/R/mCoeff.R | 4 kStatistics-2.1/kStatistics/R/mkT.R | 32 +-- kStatistics-2.1/kStatistics/R/mkmSet.R | 45 +++- kStatistics-2.1/kStatistics/R/mom2cum.R | 4 kStatistics-2.1/kStatistics/R/mpCart.R | 4 kStatistics-2.1/kStatistics/R/nKM.R | 12 - kStatistics-2.1/kStatistics/R/nKS.R | 13 - kStatistics-2.1/kStatistics/R/nPM.R | 27 ++ kStatistics-2.1/kStatistics/R/nPS.R | 8 kStatistics-2.1/kStatistics/R/nPerm.R | 2 kStatistics-2.1/kStatistics/R/nPolyk.R | 6 kStatistics-2.1/kStatistics/R/oBellPol.R |only kStatistics-2.1/kStatistics/R/pPart.R | 14 - kStatistics-2.1/kStatistics/R/pPoly.R | 3 kStatistics-2.1/kStatistics/R/powS.R | 5 kStatistics-2.1/kStatistics/build/partial.rdb |binary kStatistics-2.1/kStatistics/man/GCBellPol.Rd | 59 ++--- kStatistics-2.1/kStatistics/man/MFB.Rd | 89 ++++---- kStatistics-2.1/kStatistics/man/MFB2Set.Rd | 19 - kStatistics-2.1/kStatistics/man/Set2expr.Rd | 32 +-- kStatistics-2.1/kStatistics/man/countP.Rd | 89 ++++++-- kStatistics-2.1/kStatistics/man/cum2mom.Rd | 36 +-- kStatistics-2.1/kStatistics/man/eBellPol.Rd |only kStatistics-2.1/kStatistics/man/e_GCBellPol.Rd | 93 ++++----- kStatistics-2.1/kStatistics/man/e_MFB.Rd | 62 +++--- kStatistics-2.1/kStatistics/man/e_eBellPol.Rd |only kStatistics-2.1/kStatistics/man/ff.Rd | 12 - kStatistics-2.1/kStatistics/man/gpPart.Rd | 29 +- kStatistics-2.1/kStatistics/man/intPart.Rd | 30 +- kStatistics-2.1/kStatistics/man/kStatistics-package.Rd | 172 +++++++++++------ kStatistics-2.1/kStatistics/man/list2Set.Rd | 12 - kStatistics-2.1/kStatistics/man/list2m.Rd | 20 + kStatistics-2.1/kStatistics/man/m2Set.Rd | 55 +++-- kStatistics-2.1/kStatistics/man/mCoeff.Rd | 37 ++- kStatistics-2.1/kStatistics/man/mkT.Rd | 53 +++-- kStatistics-2.1/kStatistics/man/mkmSet.Rd | 108 +++++++--- kStatistics-2.1/kStatistics/man/mom2cum.Rd | 38 +-- kStatistics-2.1/kStatistics/man/mpCart.Rd | 43 ++-- kStatistics-2.1/kStatistics/man/nKM.Rd | 31 +-- kStatistics-2.1/kStatistics/man/nKS.Rd | 27 +- kStatistics-2.1/kStatistics/man/nPM.Rd | 42 ++-- kStatistics-2.1/kStatistics/man/nPS.Rd | 30 +- kStatistics-2.1/kStatistics/man/nPerm.Rd | 22 +- kStatistics-2.1/kStatistics/man/nPolyk.Rd | 57 ++--- kStatistics-2.1/kStatistics/man/nStirling2.Rd | 28 +- kStatistics-2.1/kStatistics/man/oBellPol.Rd |only kStatistics-2.1/kStatistics/man/pCart.Rd | 19 - kStatistics-2.1/kStatistics/man/pPart.Rd | 38 ++- kStatistics-2.1/kStatistics/man/pPoly.Rd | 12 - kStatistics-2.1/kStatistics/man/powS.Rd | 26 +- 72 files changed, 1072 insertions(+), 774 deletions(-)
Title: A 'shiny' Application for the (Audio-)Visualization of Adverse
Event Profiles
Description: Contains a 'shiny' application called AdEPro (Animation of Adverse Event Profiles) which (audio-)visualizes adverse events occurring in clinical trials. As this data is usually considered sensitive, this tool is provided as a stand-alone application that can be launched from any local machine on which the data is stored.
Author: Nicole Mentenich, Bastian Becker, Christoph Tasto, Steffen Jeske
Maintainer: Nicole Mentenich <nicole.mentenich@bayer.com>
Diff between adepro versions 3.1.0 dated 2021-06-29 and 3.2.0 dated 2021-07-06
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/order_patient.R | 2 +- inst/doc/adepro.html | 4 ++-- tests/testthat/Rplots.pdf |binary 5 files changed, 11 insertions(+), 11 deletions(-)
Title: Tools for Analysing and Visualising Workplace Analytics Data
Description: Opinionated functions that enable easier and faster
analysis of Workplace Analytics data. There are three main types of functions in 'wpa':
(i) Standard functions create a 'ggplot' visual or a summary table based on a specific
Workplace Analytics metric; (2) Report Generation functions generate HTML reports on
a specific analysis area, e.g. Collaboration; (3) Other miscellaneous functions cover
more specific applications (e.g. Subject Line text mining) of Workplace Analytics data.
This package adheres to 'tidyverse' principles and works well with the pipe syntax.
'wpa' is built with the beginner-to-intermediate R users in mind, and is optimised for
simplicity.
Author: Martin Chan [aut, cre],
Carlos Morales [aut],
Mark Powers [ctb],
Ainize Cidoncha [ctb],
Rosamary Ochoa Vargas [ctb],
Tannaz Sattari [ctb],
Lucas Hogner [ctb],
Jasminder Thind [ctb],
Simone Liebal [ctb],
Aleksey Ashikhmin [ctb],
Ellen Trinklein [ctb],
Microsoft Corporation [cph]
Maintainer: Martin Chan <martin.chan@microsoft.com>
Diff between wpa versions 1.5.0 dated 2021-05-11 and 1.6.0 dated 2021-07-06
DESCRIPTION | 11 + MD5 | 225 ++++++++++++++++++++++----------------- NAMESPACE | 9 + NEWS.md | 17 ++ R/anonymise.R |only R/create_ITSA.R |only R/create_IV.R | 52 ++++++--- R/create_bar_asis.R | 23 ++- R/create_rank.R | 18 ++- R/create_tracking.R |only R/flex_index.R | 9 + R/generate_report2.R |only R/identify_shifts_wp.R | 24 +++- R/mgrcoatt_dist.R | 41 ++++--- R/network_p2p.R | 110 +++++++++++++++---- R/themes.R | 2 R/track_hr_change.R | 7 - R/wellbeing_report.R |only R/workpatterns_classify.R | 65 +++++++++-- R/workpatterns_classify_bw.R | 49 +++++--- R/workpatterns_classify_pav.R | 2 R/workpatterns_rank.R | 40 +++++- README.md | 11 + inst/doc/intro-to-wpa.html | 20 +-- inst/rmd_template |only man/afterhours_dist.Rd | 1 man/afterhours_fizz.Rd | 1 man/afterhours_line.Rd | 1 man/afterhours_rank.Rd | 1 man/afterhours_summary.Rd | 1 man/afterhours_trend.Rd | 1 man/anonymise.Rd |only man/collaboration_area.Rd | 1 man/collaboration_dist.Rd | 1 man/collaboration_fizz.Rd | 1 man/collaboration_line.Rd | 1 man/collaboration_rank.Rd | 1 man/collaboration_sum.Rd | 1 man/collaboration_trend.Rd | 1 man/create_ITSA.Rd |only man/create_IV.Rd | 19 ++- man/create_bar.Rd | 2 man/create_bar_asis.Rd | 2 man/create_boxplot.Rd | 2 man/create_bubble.Rd | 2 man/create_dist.Rd | 2 man/create_fizz.Rd | 2 man/create_hist.Rd | 1 man/create_line.Rd | 2 man/create_line_asis.Rd | 2 man/create_period_scatter.Rd | 2 man/create_rank.Rd | 14 +- man/create_rank_combine.Rd | 5 man/create_sankey.Rd | 2 man/create_scatter.Rd | 2 man/create_stacked.Rd | 2 man/create_tracking.Rd |only man/create_trend.Rd | 2 man/email_dist.Rd | 1 man/email_fizz.Rd | 1 man/email_line.Rd | 1 man/email_rank.Rd | 1 man/email_summary.Rd | 1 man/email_trend.Rd | 1 man/external_network_plot.Rd | 1 man/flex_index.Rd | 11 + man/generate_report2.Rd |only man/hr_trend.Rd | 1 man/hrvar_count.Rd | 1 man/hrvar_trend.Rd | 1 man/identify_shifts_wp.Rd | 23 +++ man/internal_network_plot.Rd | 1 man/jitter_metrics.Rd |only man/keymetrics_scan.Rd | 1 man/meeting_dist.Rd | 1 man/meeting_fizz.Rd | 1 man/meeting_line.Rd | 1 man/meeting_quality.Rd | 1 man/meeting_rank.Rd | 1 man/meeting_summary.Rd | 1 man/meeting_trend.Rd | 1 man/meetingtype_dist.Rd | 1 man/meetingtype_dist_ca.Rd | 1 man/meetingtype_dist_mt.Rd | 1 man/meetingtype_summary.Rd | 1 man/mgrcoatt_dist.Rd | 1 man/mgrrel_matrix.Rd | 1 man/network_leiden.Rd | 4 man/network_louvain.Rd | 4 man/network_p2p.Rd | 37 +++++- man/one2one_dist.Rd | 1 man/one2one_fizz.Rd | 1 man/one2one_freq.Rd | 1 man/one2one_line.Rd | 1 man/one2one_rank.Rd | 1 man/one2one_sum.Rd | 1 man/one2one_trend.Rd | 1 man/period_change.Rd | 5 man/track_HR_change.Rd | 7 - man/wellbeing_report.Rd |only man/workloads_dist.Rd | 1 man/workloads_fizz.Rd | 1 man/workloads_line.Rd | 1 man/workloads_rank.Rd | 1 man/workloads_summary.Rd | 1 man/workloads_trend.Rd | 1 man/workpatterns_area.Rd | 1 man/workpatterns_classify.Rd | 45 +++++-- man/workpatterns_classify_bw.Rd | 18 ++- man/workpatterns_classify_pav.Rd | 2 man/workpatterns_rank.Rd | 5 111 files changed, 736 insertions(+), 277 deletions(-)
Title: Cognitive Diagnostic Computerized Adaptive Testing
Description: Provides a set of functions for conducting cognitive diagnostic computerized adaptive testing applications (Chen (2009) <doi:10.1007/s11336-009-9123-2>). It includes different item selection rules such us the global discrimination index (Kaplan, de la Torre, and Barrada (2015) <doi:10.1177/0146621614554650>) and the nonparametric selection method (Chang, Chiu, and Tsai (2019) <doi:10.1177/0146621618813113>), as well as several stopping rules. Functions for generating item banks and responses are also provided. To guide item bank calibration, model comparison at the item level can be conducted using the two-step likelihood ratio test statistic by Sorrel, de la Torre, Abad and Olea (2017) <doi:10.1027/1614-2241/a000131>.
Author: Miguel A. Sorrel [aut, cre, cph],
Pablo Nájera [aut, cph],
Francisco J. Abad [aut, cph]
Maintainer: Miguel A. Sorrel <miguel.sorrel@uam.es>
Diff between cdcatR versions 1.0.2 dated 2020-09-09 and 1.0.3 dated 2021-07-06
DESCRIPTION | 10 MD5 | 22 - NEWS.md | 6 R/LR.2step.R | 4 R/cdcat.R | 1109 ++++++++++++++++++++++++++++++++++------------------ R/cdcat.summary.R | 12 R/gen.itembank.R | 197 ++++++--- R/helper.R | 36 + README.md | 2 man/LR.2step.Rd | 4 man/cdcat.Rd | 25 + man/gen.itembank.Rd | 53 ++ 12 files changed, 1009 insertions(+), 471 deletions(-)
Title: Small-Area-Estimation Unit/Area Models and Methods for
Estimation in R
Description: Provides methods for spatial and spatio-temporal smoothing of demographic and health indicators using survey data, with particular focus on estimating and projecting under-five mortality rates, described in Mercer et al. (2015) <doi:10.1214/15-AOAS872>, Li et al. (2019) <doi:10.1371/journal.pone.0210645> and Li et al. (2020) <arXiv:2007.05117>.
Author: Zehang R Li [cre, aut],
Bryan D Martin [aut],
Yuan Hsiao [aut],
Jessica Godwin [aut],
John Paige [aut],
Jon Wakefield [aut],
Samuel J Clark [aut],
Geir-Arne Fuglstad [aut],
Andrea Riebler [aut]
Maintainer: Zehang R Li <lizehang@gmail.com>
Diff between SUMMER versions 1.1.0 dated 2021-02-01 and 1.2.0 dated 2021-07-06
DESCRIPTION | 16 MD5 | 58 +-- NAMESPACE | 5 NEWS.md | 7 R/fitINLA.R | 657 +++++++++++++++++++++------------------- R/fitINLA2.R | 671 ++++++++++++++++++++++++++--------------- R/fitspace.R | 473 +++++++++++++++++++++++----- R/getAmat.R | 3 R/getBirths.R | 10 R/getCounts.R | 2 R/getDiag.R | 4 R/getSmoothedDensity.R | 58 ++- R/plot_projINLA.R | 21 + R/projINLA.R | 74 +++- R/simhyper.R | 2 R/summary.R |only R/tcpPlot.R | 8 README.md | 26 + inst/doc/summer-vignette.html | 337 ++++++++++---------- inst/doc/u5mr-vignette.html | 144 +++----- inst/doc/u5mr-vignette2.html | 184 ++++++----- man/getAmat.Rd | 3 man/getSmoothed.Rd | 2 man/print.SUMMERmodel.Rd |only man/print.SUMMERmodel.svy.Rd |only man/print.SUMMERprojlist.Rd |only man/ridgePlot.Rd | 38 +- man/simhyper.Rd | 2 man/smoothCluster.Rd | 71 +++- man/smoothDirect.Rd | 47 +- man/smoothSurvey.Rd | 210 +++++++++++- man/summary.SUMMERmodel.Rd |only man/summary.SUMMERmodel.svy.Rd |only 33 files changed, 2016 insertions(+), 1117 deletions(-)
Title: Send Messages, Images, R Objects and Files to 'Slack'
Channels/Users
Description: 'Slack' <https://slack.com/> provides a service for teams to
collaborate by sharing messages, images, links, files and more.
Functions are provided that make it possible to interact with the
'Slack' platform 'API'. When you need to share information or data
from R, rather than resort to copy/ paste in e-mails or other services
like 'Skype' <https://www.skype.com/en/>, you can use this package to
send well-formatted output from multiple R objects and expressions to
all teammates at the same time with little effort. You can also send
images from the current graphics device, R objects, and upload files.
Author: Bob Rudis [aut, cre], Jay Jacobs [ctb], David Severski [ctb],
Quinn Weber [ctb], Konrad Karczewski [ctb], Shinya Uryu [ctb], Gregory
Jefferis [ctb], Ed Niles [ctb], Rick Saporta [ctb], Jonathan Sidi
[aut, ctb], Matt Kaye [aut, ctb], Xinye Li [ctb], Andrie de Vries
[aut, ctb]
Maintainer: Matt Kaye <mrkaye97@gmail.com>
Diff between slackr versions 2.4.0 dated 2021-07-05 and 2.4.1 dated 2021-07-06
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- R/gg_slackr.R | 3 ++- man/ggslackr.Rd | 2 +- tests/testthat/test-posting.R | 2 -- 5 files changed, 10 insertions(+), 11 deletions(-)
Title: Generalized Joint Attribute Modeling
Description: Analyzes joint attribute data (e.g., species abundance) that are combinations of continuous and discrete data with Gibbs sampling. Full model and computation details are described in Clark et al. (2018) <doi:10.1002/ecm.1241>.
Author: James S. Clark, Daniel Taylor-Rodriquez
Maintainer: James S. Clark <jimclark@duke.edu>
Diff between gjam versions 2.3.7 dated 2021-05-24 and 2.3.8 dated 2021-07-06
DESCRIPTION | 8 MD5 | 12 - R/gjamHfunctions.R | 436 ++++++++++++++++++++++++++------------------- inst/doc/gjamVignette.Rmd | 2 inst/doc/gjamVignette.html | 34 +-- man/gjam-package.Rd | 4 vignettes/gjamVignette.Rmd | 2 7 files changed, 291 insertions(+), 207 deletions(-)
Title: Exploratory Chemometrics for Spectroscopy
Description: A collection of functions for top-down exploratory data analysis
of spectral data including nuclear magnetic resonance (NMR), infrared (IR),
Raman, X-ray fluorescence (XRF) and other similar types of spectroscopy.
Includes functions for plotting and inspecting spectra, peak alignment,
hierarchical cluster analysis (HCA), principal components analysis (PCA) and
model-based clustering. Robust methods appropriate for this type of
high-dimensional data are available. ChemoSpec is designed for structured
experiments, such as metabolomics investigations, where the samples fall into
treatment and control groups. Graphical output is formatted consistently for
publication quality plots. ChemoSpec is intended to be very user friendly and
to help you get usable results quickly. A vignette covering typical operations
is available.
Author: Bryan A. Hanson [aut, cre] (<https://orcid.org/0000-0003-3536-8246>),
Mike Bostock [cph, ctb] (author of the d3.js library used by
plotSpectraJS, http://d3js.org),
Matt Keinsley [ctb] (author of initial AOV-PCA code)
Maintainer: Bryan A. Hanson <hanson@depauw.edu>
Diff between ChemoSpec versions 5.3.11 dated 2021-03-26 and 5.3.21 dated 2021-07-06
DESCRIPTION | 8 ++++---- MD5 | 11 ++++++----- NEWS.md | 4 ++++ R/hmapSpectra.R | 12 ++++++------ R/onAttach.R |only inst/doc/ChemoSpec.pdf |binary man/hmapSpectra.Rd | 12 ++++++------ 7 files changed, 26 insertions(+), 21 deletions(-)
More information about bagged.outliertrees at CRAN
Permanent link
Title: Connect to the 'jamovi' Statistical Spreadsheet
Description: Methods to access data sets from the 'jamovi' statistical
spreadsheet (see <https://www.jamovi.org> for more information) from R.
Author: Jonathon Love [aut, cre]
Maintainer: Jonathon Love <jon@thon.cc>
Diff between jmvconnect versions 1.2.18 dated 2020-05-19 and 2.0.0 dated 2021-07-06
DESCRIPTION | 8 +++--- MD5 | 22 ++++++++--------- R/RcppExports.R | 4 +-- R/main.R | 6 ++-- src/RcppExports.cpp | 9 +++--- src/column.cpp | 33 ++++++++++++++++++++++--- src/column.h | 10 ++++++- src/level.h | 13 ++++++++-- src/memorymap.cpp | 12 ++++++--- src/memorymap.h | 3 +- src/readdf.cpp | 67 +++++++++++++++++++++++++++++++++------------------- src/readdf.h | 3 +- 12 files changed, 129 insertions(+), 61 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-06-20 1.0.2
2021-03-21 1.0.1
2020-07-30 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-06-20 1.2.0
2021-03-11 1.1.0
2020-08-05 1.0.0
Title: Stock Assessment Methods Toolkit
Description: Simulation tools for closed-loop simulation are provided for the 'MSEtool' operating model to inform data-rich fisheries.
'SAMtool' provides a conditioning model, assessment models of varying complexity with standardized reporting,
model-based management procedures, and diagnostic tools for evaluating assessments inside closed-loop simulation.
Author: Quang Huynh [aut, cre],
Tom Carruthers [aut],
Adrian Hordyk [aut]
Maintainer: Quang Huynh <quang@bluematterscience.com>
Diff between SAMtool versions 1.1.2 dated 2021-03-09 and 1.2.0 dated 2021-07-06
SAMtool-1.1.2/SAMtool/R/assess_SCA2.R |only SAMtool-1.1.2/SAMtool/R/assess_SCA_Pope.R |only SAMtool-1.1.2/SAMtool/R/define_S4_class_assess.R |only SAMtool-1.1.2/SAMtool/R/report_SCA_Pope.R |only SAMtool-1.1.2/SAMtool/R/report_SCA_RWM.R |only SAMtool-1.1.2/SAMtool/inst/doc/Delay_difference.R |only SAMtool-1.1.2/SAMtool/inst/doc/Delay_difference.Rmd |only SAMtool-1.1.2/SAMtool/inst/doc/Delay_difference.html |only SAMtool-1.1.2/SAMtool/inst/doc/RCM.R |only SAMtool-1.1.2/SAMtool/inst/doc/RCM.Rmd |only SAMtool-1.1.2/SAMtool/inst/doc/RCM.html |only SAMtool-1.1.2/SAMtool/inst/doc/RCM_eq.R |only SAMtool-1.1.2/SAMtool/inst/doc/RCM_eq.Rmd |only SAMtool-1.1.2/SAMtool/inst/doc/RCM_eq.html |only SAMtool-1.1.2/SAMtool/inst/doc/RCM_sel.R |only SAMtool-1.1.2/SAMtool/inst/doc/RCM_sel.Rmd |only SAMtool-1.1.2/SAMtool/inst/doc/RCM_sel.html |only SAMtool-1.1.2/SAMtool/inst/doc/SCA.R |only SAMtool-1.1.2/SAMtool/inst/doc/SCA.Rmd |only SAMtool-1.1.2/SAMtool/inst/doc/SCA.html |only SAMtool-1.1.2/SAMtool/inst/doc/Surplus_production.R |only SAMtool-1.1.2/SAMtool/inst/doc/Surplus_production.Rmd |only SAMtool-1.1.2/SAMtool/inst/doc/Surplus_production.html |only SAMtool-1.1.2/SAMtool/inst/doc/VPA.R |only SAMtool-1.1.2/SAMtool/inst/doc/VPA.Rmd |only SAMtool-1.1.2/SAMtool/inst/doc/VPA.html |only SAMtool-1.1.2/SAMtool/inst/include/SCA2.hpp |only SAMtool-1.1.2/SAMtool/inst/include/SCA_Pope.hpp |only SAMtool-1.1.2/SAMtool/inst/include/SCA_RWM.hpp |only SAMtool-1.1.2/SAMtool/vignettes/Delay_difference.Rmd |only SAMtool-1.1.2/SAMtool/vignettes/RCM.Rmd |only SAMtool-1.1.2/SAMtool/vignettes/RCM_eq.Rmd |only SAMtool-1.1.2/SAMtool/vignettes/RCM_sel.Rmd |only SAMtool-1.1.2/SAMtool/vignettes/SCA.Rmd |only SAMtool-1.1.2/SAMtool/vignettes/Surplus_production.Rmd |only SAMtool-1.1.2/SAMtool/vignettes/VPA.Rmd |only SAMtool-1.2.0/SAMtool/DESCRIPTION | 14 SAMtool-1.2.0/SAMtool/MD5 | 187 +-- SAMtool-1.2.0/SAMtool/NAMESPACE | 11 SAMtool-1.2.0/SAMtool/NEWS.md | 25 SAMtool-1.2.0/SAMtool/R/HCRs.R | 144 ++ SAMtool-1.2.0/SAMtool/R/Misc_fun.R | 88 + SAMtool-1.2.0/SAMtool/R/RCM_data.R | 621 +++++----- SAMtool-1.2.0/SAMtool/R/RCM_est.R |only SAMtool-1.2.0/SAMtool/R/RCM_int.R | 921 +++++---------- SAMtool-1.2.0/SAMtool/R/RCM_rmd.R | 176 +- SAMtool-1.2.0/SAMtool/R/SAMtool-package.R | 16 SAMtool-1.2.0/SAMtool/R/assess_DD.R | 228 ++- SAMtool-1.2.0/SAMtool/R/assess_SCA.R | 649 ++++++++-- SAMtool-1.2.0/SAMtool/R/assess_SCA_CAL.R |only SAMtool-1.2.0/SAMtool/R/assess_SCA_DDM.R |only SAMtool-1.2.0/SAMtool/R/assess_SCA_RWM.R | 449 ------- SAMtool-1.2.0/SAMtool/R/assess_SP.R | 38 SAMtool-1.2.0/SAMtool/R/assess_SSS.R | 70 - 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SAMtool-1.2.0/SAMtool/inst/include/DD.hpp | 85 - SAMtool-1.2.0/SAMtool/inst/include/RCM.hpp | 142 +- SAMtool-1.2.0/SAMtool/inst/include/SCA.hpp | 281 +++- SAMtool-1.2.0/SAMtool/inst/include/SP.hpp | 6 SAMtool-1.2.0/SAMtool/inst/include/VPA.hpp | 56 SAMtool-1.2.0/SAMtool/inst/include/cDD.hpp | 62 - SAMtool-1.2.0/SAMtool/inst/include/functions.hpp | 36 SAMtool-1.2.0/SAMtool/inst/include/ns/ns_DD.hpp |only SAMtool-1.2.0/SAMtool/inst/include/ns/ns_RCM.hpp | 45 SAMtool-1.2.0/SAMtool/inst/include/ns/ns_SCA.hpp | 47 SAMtool-1.2.0/SAMtool/inst/include/ns/ns_SP.hpp | 4 SAMtool-1.2.0/SAMtool/inst/include/ns/ns_cDD.hpp | 6 SAMtool-1.2.0/SAMtool/man/Assessment-class.Rd | 4 SAMtool-1.2.0/SAMtool/man/DD_TMB.Rd | 44 SAMtool-1.2.0/SAMtool/man/HCR_escapement.Rd |only SAMtool-1.2.0/SAMtool/man/HCR_ramp.Rd | 19 SAMtool-1.2.0/SAMtool/man/RCM.Rd | 173 +- SAMtool-1.2.0/SAMtool/man/RCMdata-class.Rd |only SAMtool-1.2.0/SAMtool/man/RCModel-class.Rd | 39 SAMtool-1.2.0/SAMtool/man/SAMtool-package.Rd | 17 SAMtool-1.2.0/SAMtool/man/SCA.Rd | 60 SAMtool-1.2.0/SAMtool/man/SCA_CAL.Rd |only SAMtool-1.2.0/SAMtool/man/SCA_DDM.Rd |only SAMtool-1.2.0/SAMtool/man/SCA_RWM.Rd | 65 - SAMtool-1.2.0/SAMtool/man/SP.Rd | 6 SAMtool-1.2.0/SAMtool/man/SSS.Rd | 2 SAMtool-1.2.0/SAMtool/man/Shortcut.Rd | 46 SAMtool-1.2.0/SAMtool/man/VPA.Rd | 16 SAMtool-1.2.0/SAMtool/man/cDD.Rd | 29 SAMtool-1.2.0/SAMtool/man/mahplot.Rd | 58 SAMtool-1.2.0/SAMtool/man/pcod.Rd |only SAMtool-1.2.0/SAMtool/man/plot.Assessment.Rd | 2 SAMtool-1.2.0/SAMtool/man/plot.RCModel.Rd | 4 SAMtool-1.2.0/SAMtool/man/profile.Rd | 11 SAMtool-1.2.0/SAMtool/man/retrospective_AM.Rd | 2 SAMtool-1.2.0/SAMtool/man/summary.Assessment.Rd | 2 SAMtool-1.2.0/SAMtool/man/userguide.Rd | 2 SAMtool-1.2.0/SAMtool/src/SAMtool.cpp | 6 SAMtool-1.2.0/SAMtool/vignettes/SAMtool.Rmd | 56 118 files changed, 4170 insertions(+), 3175 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-08-01 1.2.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-02-19 0.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-12-03 2.0.3
2020-07-24 2.0.2
2020-07-23 2.0.1
2020-05-31 2.0.0
2020-02-06 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-10-07 1.4.12
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-11-08 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-02-11 1.0.1
2017-01-04 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-09-03 1.1.1
Title: Geometries to Plot Networks with 'ggplot2'
Description: Geometries to plot network objects with 'ggplot2'.
Author: François Briatte [aut, cre] (<https://orcid.org/0000-0001-6494-9774>),
Michał Bojanowski [ctb] (<https://orcid.org/0000-0001-7503-852X>),
Mickaël Canouil [ctb] (<https://orcid.org/0000-0002-3396-4549>),
Zachary Charlop-Powers [ctb] (<https://orcid.org/0000-0001-8816-4680>),
Jacob C. Fisher [ctb] (<https://orcid.org/0000-0003-0299-0346>),
Kipp Johnson [ctb] (<https://orcid.org/0000-0002-5102-741X>),
Tyler Rinker [ctb]
Maintainer: François Briatte <f.briatte@gmail.com>
Diff between ggnetwork versions 0.5.9 dated 2021-06-04 and 0.5.10 dated 2021-07-06
DESCRIPTION | 8 +-- MD5 | 13 ++--- NEWS.md | 7 ++ build/vignette.rds |binary inst/doc/ggnetwork.html | 90 +++++++++++++++++------------------ man/geom_nodetext.Rd | 3 - tests/testthat/test-ggnetwork.R | 6 +- tests/testthat/testthat-problems.rds |only 8 files changed, 70 insertions(+), 57 deletions(-)
Title: Access Victorian Spatial Data Through Web File Services (WFS)
Description: Easily interfaces R to spatial datasets available through
the Victorian Government's WFS (Web Feature Service): <https://services.land.vic.gov.au/catalogue/publicproxy/guest/dv_geoserver/wfs?request=getCapabilities>,
which allows users to read in 'sf' data from these sources. VicmapR uses the lazy querying approach and code developed by Teucher et al. (2021) for the 'bcdata' R package <doi:10.21105/joss.02927>.
Author: Justin Cally [aut, cre] (<https://orcid.org/0000-0003-4584-2220>),
Rachel Swain [ctb],
Andy Teucher [aut] (<https://orcid.org/0000-0002-7840-692X>, bcdata
author),
Sam Albers [aut] (<https://orcid.org/0000-0002-9270-7884>, bcdata
author),
Stephanie Hazlitt [aut] (<https://orcid.org/0000-0002-3161-2304>,
bcdata author),
Province of British Columbia [cph] (bcdata copyright)
Maintainer: Justin Cally <justin.g.cally@gmail.com>
Diff between VicmapR versions 0.1.3 dated 2021-06-10 and 0.1.6 dated 2021-07-06
VicmapR-0.1.3/VicmapR/LICENSE |only VicmapR-0.1.3/VicmapR/man/figures/README-pressure-1.png |only VicmapR-0.1.3/VicmapR/man/figures/VicmapR-Hex-2.png |only VicmapR-0.1.6/VicmapR/DESCRIPTION | 55 VicmapR-0.1.6/VicmapR/MD5 | 59 VicmapR-0.1.6/VicmapR/NAMESPACE | 1 VicmapR-0.1.6/VicmapR/NEWS.md | 13 VicmapR-0.1.6/VicmapR/R/build-query.R | 32 VicmapR-0.1.6/VicmapR/R/check_geoserver.R |only VicmapR-0.1.6/VicmapR/R/cql-predicates.R | 27 VicmapR-0.1.6/VicmapR/R/cql-translate.R | 16 VicmapR-0.1.6/VicmapR/R/filter.R | 19 VicmapR-0.1.6/VicmapR/R/globals.R | 14 VicmapR-0.1.6/VicmapR/R/listFeatures.R | 15 VicmapR-0.1.6/VicmapR/R/polygonFormat.R | 12 VicmapR-0.1.6/VicmapR/R/select.R | 20 VicmapR-0.1.6/VicmapR/R/utils-classes.R | 18 VicmapR-0.1.6/VicmapR/R/utils-collect.R | 16 VicmapR-0.1.6/VicmapR/R/utils-head.R | 15 VicmapR-0.1.6/VicmapR/R/utils-metadata.R | 26 VicmapR-0.1.6/VicmapR/R/utils-options.R | 21 VicmapR-0.1.6/VicmapR/R/utils-show_query.R | 16 VicmapR-0.1.6/VicmapR/README.md | 47 VicmapR-0.1.6/VicmapR/inst/doc/query_vicmap.R | 2 VicmapR-0.1.6/VicmapR/inst/doc/query_vicmap.Rmd | 2 VicmapR-0.1.6/VicmapR/inst/doc/query_vicmap.html | 5430 ------------ VicmapR-0.1.6/VicmapR/man/check_geoserver.Rd |only VicmapR-0.1.6/VicmapR/man/cql_geom_predicates.Rd | 4 VicmapR-0.1.6/VicmapR/man/figures/logo.png |only VicmapR-0.1.6/VicmapR/man/show_query.Rd | 2 VicmapR-0.1.6/VicmapR/man/vicmap_options.Rd | 2 VicmapR-0.1.6/VicmapR/tests/testthat/test-check_geoserver.R |only VicmapR-0.1.6/VicmapR/tests/testthat/test-cql-predicates.R | 14 VicmapR-0.1.6/VicmapR/vignettes/query_vicmap.Rmd | 2 34 files changed, 573 insertions(+), 5327 deletions(-)
Title: Automatic Unobserved Components Models
Description: Comprehensive analysis and forecasting
of univariate time series using automatic
unobserved components models and algorithms.
Harvey, AC (1989) <doi:10.1017/CBO9781107049994>.
Pedregal, DJ and Young PC (2002) <doi:10.1002/9780470996430>.
Durbin J and Koopman SJ (2012) <doi:10.1093/acprof:oso/9780199641178.001.0001>.
Author: Diego J. Pedregal [aut, cre] (<https://orcid.org/0000-0003-4958-0969>)
Maintainer: Diego J. Pedregal <Diego.Pedregal@uclm.es>
Diff between UComp versions 2.2.1 dated 2021-06-15 and 2.2.2 dated 2021-07-06
ChangeLog | 3 DESCRIPTION | 8 - MD5 | 16 +- NAMESPACE | 58 +++++----- build/vignette.rds |binary inst/doc/SpanishIpi.html | 262 +++++++---------------------------------------- src/BSMmodel.h | 11 + src/SSpace.h | 4 src/optim.h | 16 +- 9 files changed, 105 insertions(+), 273 deletions(-)
Title: Preprocessing Operators and Pipelines for 'mlr3'
Description: Dataflow programming toolkit that enriches 'mlr3' with a diverse
set of pipelining operators ('PipeOps') that can be composed into graphs.
Operations exist for data preprocessing, model fitting, and ensemble
learning. Graphs can themselves be treated as 'mlr3' 'Learners' and can
therefore be resampled, benchmarked, and tuned.
Author: Martin Binder [aut, cre],
Florian Pfisterer [aut] (<https://orcid.org/0000-0001-8867-762X>),
Lennart Schneider [aut] (<https://orcid.org/0000-0003-4152-5308>),
Bernd Bischl [aut] (<https://orcid.org/0000-0001-6002-6980>),
Michel Lang [aut] (<https://orcid.org/0000-0001-9754-0393>),
Susanne Dandl [aut]
Maintainer: Martin Binder <mlr.developer@mb706.com>
Diff between mlr3pipelines versions 0.3.4 dated 2021-03-05 and 0.3.5 dated 2021-07-06
DESCRIPTION | 9 ++--- MD5 | 46 +++++++++++++++--------------- NEWS.md | 9 +++++ R/Graph.R | 4 +- R/GraphLearner.R | 6 +-- R/LearnerAvg.R | 13 +++++--- R/PipeOpEncode.R | 2 - R/PipeOpFilter.R | 36 ++++++++++++++++++----- R/PipeOpImpute.R | 2 - R/PipeOpImputeHist.R | 2 - R/PipeOpTrafo.R | 2 - R/bibentries.R | 24 +++++++++++++++ R/mlr_graphs_elements.R | 1 build/partial.rdb |binary inst |only man/mlr_graphs_robustify.Rd | 1 man/mlr_learners_avg.Rd | 13 +++++--- man/mlr_pipeops_encode.Rd | 2 - man/mlr_pipeops_filter.Rd | 24 +++++++++++++-- tests/testthat/test_GraphLearner.R | 2 - tests/testthat/test_multiplicities.R | 13 ++++++++ tests/testthat/test_pipeop_colroles.R | 12 +++---- tests/testthat/test_pipeop_filter.R | 34 ++++++++++++++++++++-- tests/testthat/test_pipeop_updatetarget.R | 2 - 24 files changed, 187 insertions(+), 72 deletions(-)
Title: A Swift, Versatile Phylogenomic and High-Throughput Sequencing
Simulator
Description: Simply and efficiently
simulates (i) variants from reference genomes and (ii) reads from both Illumina
<https://www.illumina.com/>
and Pacific Biosciences (PacBio) <https://www.pacb.com/> platforms.
It can either read reference genomes from FASTA files or simulate new ones.
Genomic variants can be simulated using summary statistics, phylogenies,
Variant Call Format (VCF) files, and coalescent simulations—the latter of which
can include selection, recombination, and demographic fluctuations.
'jackalope' can simulate single, paired-end, or mate-pair Illumina reads,
as well as PacBio reads.
These simulations include sequencing errors, mapping qualities, multiplexing,
and optical/polymerase chain reaction (PCR) duplicates.
Simulating Illumina sequencing is based on ART
by Huang et al. (2012) <doi:10.1093/bioinformatics/btr708>.
PacBio sequencing simulation is based on
SimLoRD by Stöcker et al. (2016) <doi:10.1093/bioinformatics/btw286>.
All outputs can be written to standard file formats.
Author: Lucas A. Nell [cph, aut, cre] (<https://orcid.org/0000-0003-3209-0517>)
Maintainer: Lucas A. Nell <lucas@lucasnell.com>
Diff between jackalope versions 1.1.2 dated 2021-02-10 and 1.1.3 dated 2021-07-06
DESCRIPTION | 8 MD5 | 16 NEWS.md | 11 build/partial.rdb |binary build/vignette.rds |binary inst/doc/jackalope-intro.html | 838 +++++++++++++++++++++++++++--------------- inst/doc/sub-models.html | 472 ++++++++++++++++------- src/Makevars | 3 src/ref_hap_access.cpp | 2 9 files changed, 900 insertions(+), 450 deletions(-)
Title: Nombres Inscritos en Chile (1920 - 2020)
Description: Datos de nombres inscritos en Chile
entre 1920 y 2020, de acuerdo al Servicio de Registro Civil.
English: Chilean baby names registered from 1920 to 2020
by the Civil Registry Service.
Author: Riva Quiroga [aut, cre] (<https://orcid.org/0000-0002-1147-4135>)
Maintainer: Riva Quiroga <riva.quiroga@uc.cl>
Diff between guaguas versions 0.1.0 dated 2020-06-26 and 0.2.0 dated 2021-07-06
guaguas-0.1.0/guaguas/data/guaguas.rda |only guaguas-0.2.0/guaguas/DESCRIPTION | 22 ++-- guaguas-0.2.0/guaguas/MD5 | 26 +++-- guaguas-0.2.0/guaguas/NAMESPACE | 1 guaguas-0.2.0/guaguas/NEWS.md | 9 +- guaguas-0.2.0/guaguas/R/guaguas.R | 18 +--- guaguas-0.2.0/guaguas/R/guaguas_frecuentes.R |only guaguas-0.2.0/guaguas/R/sysdata.rda |only guaguas-0.2.0/guaguas/README.md | 76 ++++++++++------- guaguas-0.2.0/guaguas/data/guaguas.R |only guaguas-0.2.0/guaguas/man/figures/bsb.png |binary guaguas-0.2.0/guaguas/man/figures/guaguas-hex.png |only guaguas-0.2.0/guaguas/man/figures/romane.png |binary guaguas-0.2.0/guaguas/man/figures/salvador-augusto.png |binary guaguas-0.2.0/guaguas/man/guaguas.Rd | 15 +-- guaguas-0.2.0/guaguas/man/guaguas_frecuentes.Rd |only guaguas-0.2.0/guaguas/tests |only 17 files changed, 95 insertions(+), 72 deletions(-)
Title: Quantified Risk Assessment Toolkit
Description: An open source risk analysis toolkit based on the OpenFAIR ontology
<https://publications.opengroup.org/c20b> and risk analysis standard
<https://publications.opengroup.org/c20a>. Empowers an organization to
perform a quantifiable, repeatable, and data-driven risk review.
Author: David Severski [aut, cre] (<https://orcid.org/0000-0001-7867-0459>)
Maintainer: David Severski <davidski@deadheaven.com>
Diff between evaluator versions 0.4.2 dated 2020-04-16 and 0.4.3 dated 2021-07-06
evaluator-0.4.2/evaluator/R/evaluator.R |only evaluator-0.4.2/evaluator/data/datalist |only evaluator-0.4.2/evaluator/man/evaluator.Rd |only evaluator-0.4.3/evaluator/DESCRIPTION | 16 evaluator-0.4.3/evaluator/MD5 | 63 evaluator-0.4.3/evaluator/NEWS.md | 10 evaluator-0.4.3/evaluator/R/common_graphs.R | 8 evaluator-0.4.3/evaluator/R/create_tidyrisk_skeleton.R | 5 evaluator-0.4.3/evaluator/R/encode.R | 22 evaluator-0.4.3/evaluator/R/evaluator-package.R |only evaluator-0.4.3/evaluator/R/import.R | 4 evaluator-0.4.3/evaluator/R/report.R | 2 evaluator-0.4.3/evaluator/R/utils.R | 2 evaluator-0.4.3/evaluator/README.md | 259 +-- evaluator-0.4.3/evaluator/build/vignette.rds |binary evaluator-0.4.3/evaluator/inst/WORDLIST | 1 evaluator-0.4.3/evaluator/inst/doc/customization.html | 350 +--- evaluator-0.4.3/evaluator/inst/doc/process.R | 20 evaluator-0.4.3/evaluator/inst/doc/process.html | 568 ++----- evaluator-0.4.3/evaluator/inst/doc/usage.R | 110 - evaluator-0.4.3/evaluator/inst/doc/usage.html | 724 +++------- evaluator-0.4.3/evaluator/inst/openfair_example/openfair_example.Rmd | 40 evaluator-0.4.3/evaluator/man/dollar_millions.Rd | 40 evaluator-0.4.3/evaluator/man/evaluator-package.Rd |only evaluator-0.4.3/evaluator/man/get_base_fontfamily.Rd | 36 evaluator-0.4.3/evaluator/man/mc_capabilities.Rd | 6 evaluator-0.4.3/evaluator/man/mc_domain_summary.Rd | 6 evaluator-0.4.3/evaluator/man/mc_domains.Rd | 6 evaluator-0.4.3/evaluator/man/mc_mappings.Rd | 6 evaluator-0.4.3/evaluator/man/mc_qualitative_scenarios.Rd | 6 evaluator-0.4.3/evaluator/man/mc_quantitative_scenarios.Rd | 6 evaluator-0.4.3/evaluator/man/mc_scenario_summary.Rd | 6 evaluator-0.4.3/evaluator/man/mc_simulation_results.Rd | 6 evaluator-0.4.3/evaluator/man/theme_evaluator.Rd | 46 evaluator-0.4.3/evaluator/tests/testthat/test-utils.R | 3 35 files changed, 936 insertions(+), 1441 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-02-15 1.1.0
2018-11-06 1.0.0
2018-02-06 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-01-22 0.0.1