Title: Discovery, Retrieval, and Analysis of Water Isotope Data
Description: The wiDB...() functions provide an interface to the public API
of the wiDB <https://github.com/SPATIAL-Lab/isoWater/blob/master/Protocol.md>:
build, check and submit queries, and receive and
unpack responses. Data analysis functions support Bayesian
inference of the source and source isotope composition of water
samples that may have experienced evaporation. Algorithms
adapted from Bowen et al. (2018, <doi:10.1007/s00442-018-4192-5>).
Author: Gabe Bowen [aut, cre]
Maintainer: Gabe Bowen <gabe.bowen@utah.edu>
Diff between isoWater versions 1.0.0 dated 2021-07-15 and 1.0.1 dated 2021-07-20
DESCRIPTION | 8 ++--- MD5 | 14 ++++----- NEWS.md | 3 ++ R/wiDBfunctions.R | 62 +++++++++++++++++++++++++++++++++++++++---- build/partial.rdb |binary inst/doc/isoWater.html | 64 ++++++++++++++++++++++----------------------- tests/testthat.R | 1 tests/testthat/test-wiDB.R | 50 ++++++++++++++++++++--------------- 8 files changed, 132 insertions(+), 70 deletions(-)
Title: Comprehensive Collection of Color Palettes
Description: The choices of color palettes in R can be quite
overwhelming with palettes spread over many packages with many
different API's. This packages aims to collect all color palettes
across the R ecosystem under the same package with a streamlined API.
Author: See AUTHORS file.
Maintainer: Emil Hvitfeldt <emilhhvitfeldt@gmail.com>
Diff between paletteer versions 1.3.0 dated 2021-01-06 and 1.4.0 dated 2021-07-20
paletteer-1.3.0/paletteer/tests/figs |only paletteer-1.4.0/paletteer/DESCRIPTION | 8 paletteer-1.4.0/paletteer/LICENSE.note | 28 + paletteer-1.4.0/paletteer/MD5 | 193 +++++----- paletteer-1.4.0/paletteer/NAMESPACE | 2 paletteer-1.4.0/paletteer/NEWS.md | 8 paletteer-1.4.0/paletteer/R/aaa.R | 18 paletteer-1.4.0/paletteer/R/completeme.R | 46 +- paletteer-1.4.0/paletteer/R/ggplot2_scales_binned.R | 28 - paletteer-1.4.0/paletteer/R/ggplot2_scales_continuous.R | 28 - paletteer-1.4.0/paletteer/R/ggplot2_scales_discrete.R | 29 - paletteer-1.4.0/paletteer/R/paletteer_c.R | 13 paletteer-1.4.0/paletteer/R/paletteer_c_wrappers.R | 76 ++- paletteer-1.4.0/paletteer/R/paletteer_d.R | 31 + paletteer-1.4.0/paletteer/R/paletteer_dynamic.R | 29 - paletteer-1.4.0/paletteer/R/sysdata.rda |binary paletteer-1.4.0/paletteer/README.md | 42 +- paletteer-1.4.0/paletteer/data/paletteer_packages.rda |binary paletteer-1.4.0/paletteer/data/palettes_c_names.rda |binary paletteer-1.4.0/paletteer/data/palettes_d.rda |binary paletteer-1.4.0/paletteer/data/palettes_d_names.rda |binary paletteer-1.4.0/paletteer/inst/CITATION |only paletteer-1.4.0/paletteer/man/ggplot2-scales-binned.Rd | 4 paletteer-1.4.0/paletteer/man/ggplot2-scales-continuous.Rd | 4 paletteer-1.4.0/paletteer/man/ggplot2-scales-discrete.Rd | 4 paletteer-1.4.0/paletteer/man/palettes_c_names.Rd | 2 paletteer-1.4.0/paletteer/man/palettes_d.Rd | 4 paletteer-1.4.0/paletteer/man/palettes_d_names.Rd | 4 paletteer-1.4.0/paletteer/tests/testthat/_snaps |only paletteer-1.4.0/paletteer/tests/testthat/test-completeme.R | 18 paletteer-1.4.0/paletteer/tests/testthat/test-ggplot2_scales_binned.R | 80 ++++ paletteer-1.4.0/paletteer/tests/testthat/test-ggplot2_scales_continuous.R | 80 ++++ paletteer-1.4.0/paletteer/tests/testthat/test-ggplot2_scales_discrete.R | 79 ++++ paletteer-1.4.0/paletteer/tests/testthat/test-paletteer_c.R | 30 + paletteer-1.4.0/paletteer/tests/testthat/test-paletteer_d.R | 30 + paletteer-1.4.0/paletteer/tests/testthat/test-paletteer_dynamic.R | 30 + paletteer-1.4.0/paletteer/tests/testthat/test-vdiffr_palette_check.R | 57 +- 37 files changed, 694 insertions(+), 311 deletions(-)
Title: Bayesian Power Prior Design
Description: Bayesian power/type I error calculation and model fitting using
the power prior and the normalized power prior for generalized linear models.
The Bayesian clinical trial design methodology is described in Chen et al. (2011)
<doi:10.1111/j.1541-0420.2011.01561.x>, and Psioda and Ibrahim (2019)
<doi:10.1093/biostatistics/kxy009>. The normalized power prior is described in Duan et al. (2006)
<doi:10.1002/env.752> and Ibrahim et al. (2015) <doi:10.1002/sim.6728>.
Author: Yueqi Shen [aut, cre],
Matthew A. Psioda [aut],
Joseph G. Ibrahim [aut]
Maintainer: Yueqi Shen <ys137@live.unc.edu>
Diff between BayesPPD versions 1.0.1 dated 2021-07-13 and 1.0.2 dated 2021-07-20
DESCRIPTION | 10 MD5 | 12 R/RcppExports.R | 110 +-- R/main_func.R | 1469 ++++++++++++++++++++++++++-------------------------- man/glm.fixed.a0.Rd | 12 src/NI_random.cpp | 2 src/RcppExports.cpp | 5 7 files changed, 817 insertions(+), 803 deletions(-)
Title: Quantitative Fatty Acid Signature Analysis
Description: Accurate estimates of the diets of predators are required
in many areas of ecology, but for many species current methods are
imprecise, limited to the last meal, and often biased. The diversity
of fatty acids and their patterns in organisms, coupled with the
narrow limitations on their biosynthesis, properties of digestion in
monogastric animals, and the prevalence of large storage reservoirs of
lipid in many predators, led to the development of quantitative
fatty acid signature analysis (QFASA) to study predator diets.
Author: Connie Stewart [cre, aut, cph],
Sara Iverson [aut, cph],
Chris Field [aut],
Don Bowen [aut],
Wade Blanchard [aut],
Shelley Lang [aut],
Justin Kamerman [aut],
Hongchang Bao [ctb],
Holly Steeves [aut],
Jennifer McNichol [aut]
Maintainer: Connie Stewart <connie.stewart@unb.ca>
Diff between QFASA versions 1.1.0 dated 2021-06-10 and 1.1.1 dated 2021-07-20
DESCRIPTION | 24 MD5 | 37 - NAMESPACE | 4 NEWS.md | 12 R/All_MUFASA_Code.R | 8 R/All_SimultaneousEst_MUFASA_Code.R |only R/roxygentags.r | 3 build/vignette.rds |binary inst/doc/MUFASA_Workflow_Example.Rmd | 136 +++-- inst/doc/MUFASA_Workflow_Example.html | 372 +++++++------- inst/doc/Parallel_Execution_for_Confidence_Intervals.html | 4 inst/doc/QFASA_Workflow_Example.Rmd | 4 inst/doc/QFASA_Workflow_Example.html | 340 +++++------- inst/doc/SMUFASA_Workflow_Example.R |only inst/doc/SMUFASA_Workflow_Example.Rmd |only inst/doc/SMUFASA_Workflow_Example.html |only man/p.MUFASA.Rd | 6 man/p.SMUFASA.Rd |only src/CommonDiet.cpp |only src/Makefile |only src/Makefile.win |only vignettes/MUFASA_Workflow_Example.Rmd | 136 +++-- vignettes/QFASA_Workflow_Example.Rmd | 4 vignettes/SMUFASA_Workflow_Example.Rmd |only 24 files changed, 575 insertions(+), 515 deletions(-)
Title: 'Hydropeaking Events Detection Algorithm'
Description: This tool identifies hydropeaking events from raw time-series flow record, a rapid flow variation induced by the hourly-adjusted electricity market. The novelty of 'HEDA' is to use vector angle instead of the first-order derivative to detect change points which not only largely improves the computing efficiency but also accounts for the rate of change of the flow variation. More details <doi:10.1016/j.jhydrol.2021.126392>.
Author: Tingyu Li [aut, cre],
Xiaotian Zou [aut],
Gregory Pasternack [aut]
Maintainer: Tingyu Li <styli@ucdavis.edu>
Diff between HEDA versions 0.1.4 dated 2021-06-15 and 0.1.5 dated 2021-07-20
HEDA-0.1.4/HEDA/data/datalist |only HEDA-0.1.5/HEDA/DESCRIPTION | 14 ++-- HEDA-0.1.5/HEDA/LICENSE | 4 - HEDA-0.1.5/HEDA/MD5 | 27 ++++----- HEDA-0.1.5/HEDA/R/HPK_frq_mgt.R | 6 +- HEDA-0.1.5/HEDA/R/HPK_plot.R | 8 +- HEDA-0.1.5/HEDA/man/Clean_Spt.Rd | 94 ++++++++++++++++----------------- HEDA-0.1.5/HEDA/man/Clean_conectD.Rd | 96 +++++++++++++++++----------------- HEDA-0.1.5/HEDA/man/Clean_position.Rd | 80 ++++++++++++++-------------- HEDA-0.1.5/HEDA/man/HEDA_Tidy.Rd | 72 ++++++++++++------------- HEDA-0.1.5/HEDA/man/HPK_SampleData.Rd | 58 ++++++++++---------- HEDA-0.1.5/HEDA/man/HPK_frq_mgt.Rd | 58 ++++++++++---------- HEDA-0.1.5/HEDA/man/HPK_plot.Rd | 68 ++++++++++++------------ HEDA-0.1.5/HEDA/man/HPK_rt_dur.Rd | 66 +++++++++++------------ HEDA-0.1.5/HEDA/man/ReversalCount.Rd | 84 ++++++++++++++--------------- 15 files changed, 367 insertions(+), 368 deletions(-)
Title: Benford's Analysis on Large Data Sets
Description: Perform the Benford's Analysis to a data set in order to evaluate if it contains human fabricated data. For more details on the method see Moreau, 2021, Model Assist. Statist. Appl., 16 (2021) 73–79. <doi:10.3233/MAS-210517>.
Author: Vitor Hugo Moreau
Maintainer: Vitor Hugo Moreau <vitorhmc@ufba.br>
Diff between benford versions 1.0.0 dated 2021-06-04 and 1.0.1 dated 2021-07-20
DESCRIPTION | 6 +++--- MD5 | 6 +++--- data/switz.data.rda |binary man/switz.data.Rd | 2 +- 4 files changed, 7 insertions(+), 7 deletions(-)
Title: Visualization of Design of Experiments from the 'agricolae'
Package
Description: Visualization of Design of Experiments from the 'agricolae' package with 'ggplot2' framework
The user provides an experiment design from the 'agricolae' package, calls the corresponding function and will receive a
visualization with 'ggplot2' based functions that are specific for each design. As there are many different designs, each design is tested on its type.
The output can be modified with standard 'ggplot2' commands or with other packages with 'ggplot2' function extensions.
Author: Jens Harbers [aut, cre] (<https://orcid.org/0000-0001-6634-623X>)
Maintainer: Jens Harbers <jensharbers@gmail.com>
Diff between agricolaeplotr versions 0.2.1 dated 2021-07-09 and 0.2.2 dated 2021-07-20
DESCRIPTION | 6 MD5 | 19 - NEWS.md |only R/hello.R | 27 +- inst/doc/vignette.R | 2 inst/doc/vignette.Rmd | 8 inst/doc/vignette.html | 455 ++++++++++---------------------------- man/plot_design.factorial_rcbd.Rd | 2 man/plot_design_crd.Rd | 2 tests/testthat/tests.R | 41 +++ vignettes/vignette.Rmd | 8 11 files changed, 216 insertions(+), 354 deletions(-)
More information about agricolaeplotr at CRAN
Permanent link
Title: Time Zone Database Information
Description: Provides an up-to-date copy of the Internet Assigned Numbers
Authority (IANA) Time Zone Database. It is updated periodically to
reflect changes made by political bodies to time zone boundaries, UTC
offsets, and daylight saving time rules. Additionally, this package
provides a C++ interface for working with the 'date' library. 'date'
provides comprehensive support for working with dates and date-times,
which this package exposes to make it easier for other R packages to
utilize. Headers are provided for calendar specific calculations,
along with a limited interface for time zone manipulations.
Author: Davis Vaughan [aut, cre],
Howard Hinnant [cph] (Author of the included date library),
RStudio [cph, fnd]
Maintainer: Davis Vaughan <davis@rstudio.com>
Diff between tzdb versions 0.1.1 dated 2021-04-22 and 0.1.2 dated 2021-07-20
DESCRIPTION | 8 +- MD5 | 16 ++--- NEWS.md | 4 + inst/include/date/date.h | 118 ++++++++++++++++++++++++++++++++-------- inst/include/date/ios.h | 4 - inst/include/date/julian.h | 16 ++--- inst/include/date/solar_hijri.h | 20 +++--- man/tzdb-package.Rd | 12 ++-- src/tz.cpp | 2 9 files changed, 140 insertions(+), 60 deletions(-)
Title: Processing and Physical Activity Summaries of Minute Level
Activity Data
Description: Provides functions to process minute level actigraphy-measured activity counts data and extract commonly used physical activity volume and fragmentation metrics.
Author: Marta Karas [aut, cre] (<https://orcid.org/0000-0001-5889-3970>),
Jennifer Schrack [aut] (<https://orcid.org/0000-0001-9244-9267>),
Jacek Urbanek [aut] (<https://orcid.org/0000-0002-1890-8899>)
Maintainer: Marta Karas <marta.karass@gmail.com>
Diff between arctools versions 1.1.2 dated 2021-04-15 and 1.1.4 dated 2021-07-20
DESCRIPTION | 18 - MD5 | 17 - NEWS.md | 4 README.md | 384 +++++++++++++------------ build/vignette.rds |binary inst/CITATION |only inst/doc/arctools_intro.Rmd | 4 inst/doc/arctools_intro.html | 650 +++++++++++++++---------------------------- man/arctools-package.Rd | 2 vignettes/arctools_intro.Rmd | 4 10 files changed, 460 insertions(+), 623 deletions(-)
Title: Variance-Adjusted Mahalanobis
Description: Contains logic for cell-specific gene set scoring of single cell RNA sequencing data.
Author: H. Robert Frost
Maintainer: H. Robert Frost <rob.frost@dartmouth.edu>
Diff between VAM versions 0.5.2 dated 2021-03-15 and 0.5.3 dated 2021-07-20
DESCRIPTION | 7 +++---- MD5 | 16 ++++++++-------- NEWS | 6 ++++++ R/VAM.R | 20 +++++++++++++++++--- inst/doc/VAM_PBMC3K_Hallmark_LogNormalization.pdf |binary inst/doc/VAM_PBMC3K_LogNormalization.pdf |binary inst/doc/VAM_PBMC3K_SCTransform.pdf |binary inst/doc/VAM_pbmc_small.pdf |binary inst/doc/VAM_pbmc_small_sctransform.pdf |binary 9 files changed, 34 insertions(+), 15 deletions(-)
Title: 'Rcpp' Bindings for the 'Corpus Workbench' ('CWB')
Description: 'Rcpp' Bindings for the C code of the 'Corpus Workbench' ('CWB'), an indexing and query
engine to efficiently analyze large corpora (<http://cwb.sourceforge.net>). 'RcppCWB' is licensed
under the GNU GPL-3, in line with the GPL-3 license of the 'CWB' (<https://www.r-project.org/Licenses/GPL-3>).
The 'CWB' relies on 'pcre' (BSD license, see <http://www.pcre.org/licence.txt>)
and 'GLib' (LGPL license, see <https://www.gnu.org/licenses/lgpl-3.0.en.html>).
See the file LICENSE.note for further information. The package includes modified code of the
'rcqp' package (GPL-2, see <https://cran.r-project.org/package=rcqp>). The original work of the authors
of the 'rcqp' package is acknowledged with great respect, and they are listed as authors of this
package. To achieve cross-platform portability (including Windows), using 'Rcpp' for wrapper code
is the approach used by 'RcppCWB'.
Author: Andreas Blaette [aut, cre],
Bernard Desgraupes [aut],
Sylvain Loiseau [aut],
Oliver Christ [ctb],
Bruno Maximilian Schulze [ctb],
Stefan Evert [ctb],
Arne Fitschen [ctb],
Jeroen Ooms [ctb],
Marius Bertram [ctb]
Maintainer: Andreas Blaette <andreas.blaette@uni-due.de>
Diff between RcppCWB versions 0.4.2 dated 2021-07-13 and 0.4.3 dated 2021-07-20
RcppCWB-0.4.2/RcppCWB/src/cwb/cqp/_options.h |only RcppCWB-0.4.3/RcppCWB/DESCRIPTION | 8 +- RcppCWB-0.4.3/RcppCWB/MD5 | 71 +++++++++++------------ RcppCWB-0.4.3/RcppCWB/NEWS.md | 7 +- RcppCWB-0.4.3/RcppCWB/src/cqp.cpp | 1 RcppCWB-0.4.3/RcppCWB/src/cwb/CQi/cqpserver.c | 2 RcppCWB-0.4.3/RcppCWB/src/cwb/cl/Makefile | 7 -- RcppCWB-0.4.3/RcppCWB/src/cwb/cl/bitfields.c | 2 RcppCWB-0.4.3/RcppCWB/src/cwb/cl/bitio.c | 1 RcppCWB-0.4.3/RcppCWB/src/cwb/cl/cdaccess.c | 1 RcppCWB-0.4.3/RcppCWB/src/cwb/cl/class-mapping.c | 2 RcppCWB-0.4.3/RcppCWB/src/cwb/cl/corpus.c | 1 RcppCWB-0.4.3/RcppCWB/src/cwb/cl/fileutils.c | 2 RcppCWB-0.4.3/RcppCWB/src/cwb/cl/globals.h | 4 - RcppCWB-0.4.3/RcppCWB/src/cwb/cl/lex.creg.c | 5 - RcppCWB-0.4.3/RcppCWB/src/cwb/cl/lexhash.c | 3 RcppCWB-0.4.3/RcppCWB/src/cwb/cl/macros.c | 2 RcppCWB-0.4.3/RcppCWB/src/cwb/cl/ngram-hash.c | 2 RcppCWB-0.4.3/RcppCWB/src/cwb/cl/registry.tab.c | 8 -- RcppCWB-0.4.3/RcppCWB/src/cwb/cl/regopt.c | 1 RcppCWB-0.4.3/RcppCWB/src/cwb/cl/special-chars.c | 1 RcppCWB-0.4.3/RcppCWB/src/cwb/cl/storage.c | 1 RcppCWB-0.4.3/RcppCWB/src/cwb/cl/windows-mmap.c | 2 RcppCWB-0.4.3/RcppCWB/src/cwb/cqp/Makefile | 18 ----- RcppCWB-0.4.3/RcppCWB/src/cwb/cqp/ascii-print.c | 2 RcppCWB-0.4.3/RcppCWB/src/cwb/cqp/eval.c | 2 RcppCWB-0.4.3/RcppCWB/src/cwb/cqp/eval.h | 3 RcppCWB-0.4.3/RcppCWB/src/cwb/cqp/groups.c | 1 RcppCWB-0.4.3/RcppCWB/src/cwb/cqp/hash.c | 3 RcppCWB-0.4.3/RcppCWB/src/cwb/cqp/hash.h | 2 RcppCWB-0.4.3/RcppCWB/src/cwb/cqp/lex.yy.c | 2 RcppCWB-0.4.3/RcppCWB/src/cwb/cqp/output.c | 5 - RcppCWB-0.4.3/RcppCWB/src/cwb/cqp/parser.tab.c | 10 +-- RcppCWB-0.4.3/RcppCWB/src/cwb/cqp/parser.y | 2 RcppCWB-0.4.3/RcppCWB/src/cwb/cqp/print-modes.h | 2 RcppCWB-0.4.3/RcppCWB/src/cwb/cqp/ranges.c | 7 -- RcppCWB-0.4.3/RcppCWB/src/cwb/cqp/variables.c | 2 37 files changed, 81 insertions(+), 114 deletions(-)
Title: Create Tables from Different Types of Regression
Description: Create regression tables from generalized linear model(GLM), generalized estimating equation(GEE), generalized linear mixed-effects model(GLMM), Cox proportional hazards model, survey-weighted generalized linear model(svyglm) and survey-weighted Cox model results for publication.
Author: Jinseob Kim [aut, cre] (<https://orcid.org/0000-0002-9403-605X>),
Zarathu [cph, fnd]
Maintainer: Jinseob Kim <jinseob2kim@gmail.com>
Diff between jstable versions 1.0.4 dated 2021-07-12 and 1.0.5 dated 2021-07-20
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NEWS.md | 5 +++++ R/svycox.R | 12 +++++++++++- build/vignette.rds |binary inst/doc/jstable.html | 28 ++++++++++++++-------------- 6 files changed, 39 insertions(+), 24 deletions(-)
Title: API Client for Fantasy Football League Platforms
Description: Helps access various Fantasy Football APIs by handling
authentication and rate-limiting, forming appropriate calls, and
returning tidy dataframes which can be easily connected to other data
sources.
Author: Tan Ho [aut, cre],
Tony ElHabr [ctb],
Joe Sydlowski [ctb]
Maintainer: Tan Ho <tan@tanho.ca>
Diff between ffscrapr versions 1.4.3 dated 2021-06-12 and 1.4.4 dated 2021-07-20
DESCRIPTION | 13 - MD5 | 137 +++++++-------- NAMESPACE | 2 NEWS.md | 24 ++ R/1_import_dp.R | 27 +++ R/espn_api.R | 3 R/espn_draft.R | 18 +- R/espn_potentialpoints.R | 6 R/espn_rosters.R | 13 + R/espn_starters.R | 23 ++ R/espn_transactions.R | 13 + R/flea_api.R | 4 R/mfl_api.R | 3 R/mfl_scoring.R | 9 - R/mfl_scoringhistory.R | 16 + R/mfl_starterpositions.R | 4 R/sleeper_api.R | 4 R/sleeper_league.R | 13 + R/sleeper_transactions.R | 16 + R/zzz.R | 13 + README.md | 56 +++--- data/dp_name_mapping.rda |binary inst/doc/espn_authentication.html | 4 inst/doc/espn_basics.R | 6 inst/doc/espn_basics.Rmd | 6 inst/doc/espn_basics.html | 4 inst/doc/espn_getendpoint.R | 6 inst/doc/espn_getendpoint.Rmd | 6 inst/doc/espn_getendpoint.html | 46 ++--- inst/doc/ffscrapr_caching.Rmd | 2 inst/doc/ffscrapr_caching.html | 6 inst/doc/ffscrapr_scoringhistory.html | 4 inst/doc/fleaflicker_basics.R | 6 inst/doc/fleaflicker_basics.Rmd | 6 inst/doc/fleaflicker_basics.html | 4 inst/doc/fleaflicker_getendpoint.R | 6 inst/doc/fleaflicker_getendpoint.Rmd | 6 inst/doc/fleaflicker_getendpoint.html | 4 inst/doc/mfl_basics.R | 6 inst/doc/mfl_basics.Rmd | 6 inst/doc/mfl_basics.html | 56 +++--- inst/doc/mfl_getendpoint.R | 6 inst/doc/mfl_getendpoint.Rmd | 6 inst/doc/mfl_getendpoint.html | 4 inst/doc/sleeper_basics.R | 6 inst/doc/sleeper_basics.Rmd | 6 inst/doc/sleeper_basics.html | 52 ++--- inst/doc/sleeper_getendpoint.R | 6 inst/doc/sleeper_getendpoint.Rmd | 6 inst/doc/sleeper_getendpoint.html | 18 +- man/dp_clean_html.Rd |only man/dp_cleannames.Rd | 8 man/ff_scoringhistory.Rd | 2 man/ffscrapr-package.Rd | 8 man/figures/logo.svg | 282 ++++++++++++++++---------------- man/nflfastr_rosters.Rd | 2 man/nflfastr_weekly.Rd | 2 tests/testthat/setup.R | 6 tests/testthat/test-ff_league.R | 4 tests/testthat/test-ff_scoringhistory.R | 9 - tests/testthat/test-ff_transactions.R | 6 vignettes/espn_basics.Rmd | 6 vignettes/espn_getendpoint.Rmd | 6 vignettes/ffscrapr_caching.Rmd | 2 vignettes/fleaflicker_basics.Rmd | 6 vignettes/fleaflicker_getendpoint.Rmd | 6 vignettes/mfl_basics.Rmd | 6 vignettes/mfl_getendpoint.Rmd | 6 vignettes/sleeper_basics.Rmd | 6 vignettes/sleeper_getendpoint.Rmd | 6 70 files changed, 632 insertions(+), 464 deletions(-)
Title: Parametric Time to Event Analysis
Description: Performs maximum likelihood based estimation and inference on time to event data, possibly subject to non-informative right censoring. FitParaSurv() provides maximum likelihood estimates of model parameters and distributional characteristics, including the mean, median, variance, and restricted mean. CompParaSurv() compares the mean, median, and restricted mean survival experiences of two treatment groups. Candidate distributions include the exponential, gamma, generalized gamma, log-normal, and Weibull.
Author: Zachary McCaw [aut, cre] (<https://orcid.org/0000-0002-2006-9828>)
Maintainer: Zachary McCaw <zmccaw@alumni.harvard.edu>
Diff between Temporal versions 0.2.0 dated 2020-03-16 and 0.3.0 dated 2021-07-20
Temporal-0.2.0/Temporal/R/RcppExports.R |only Temporal-0.2.0/Temporal/R/survFunctions.R |only Temporal-0.2.0/Temporal/inst/doc/Temporal.html |only Temporal-0.2.0/Temporal/man/MMP.Rd |only Temporal-0.2.0/Temporal/man/bootCI.Rd |only Temporal-0.2.0/Temporal/man/checkArm.Rd |only Temporal-0.2.0/Temporal/man/checkDist.Rd |only Temporal-0.2.0/Temporal/man/checkInit.Rd |only Temporal-0.2.0/Temporal/man/checkStatus.Rd |only Temporal-0.2.0/Temporal/man/checkTheta.Rd |only Temporal-0.2.0/Temporal/man/compParaSurv.Rd |only Temporal-0.2.0/Temporal/man/defaultParam.Rd |only Temporal-0.2.0/Temporal/man/estDiff.Rd |only Temporal-0.2.0/Temporal/man/estRatio.Rd |only Temporal-0.2.0/Temporal/man/fit.Exp.Rd |only Temporal-0.2.0/Temporal/man/fit.Gamma.Complete.Rd |only Temporal-0.2.0/Temporal/man/fit.Gamma.Rd |only Temporal-0.2.0/Temporal/man/fit.GenGamma.Complete.Rd |only Temporal-0.2.0/Temporal/man/fit.GenGamma.Rd |only Temporal-0.2.0/Temporal/man/fit.LogNormal.Rd |only Temporal-0.2.0/Temporal/man/fit.Weibull.Rd |only Temporal-0.2.0/Temporal/man/fitParaSurv.Rd |only Temporal-0.2.0/Temporal/man/genData.Rd |only Temporal-0.2.0/Temporal/man/matIP.Rd |only Temporal-0.2.0/Temporal/man/matInv.Rd |only Temporal-0.2.0/Temporal/man/matOP.Rd |only Temporal-0.2.0/Temporal/man/matQF.Rd |only Temporal-0.2.0/Temporal/man/paraRMST.Rd |only Temporal-0.2.0/Temporal/man/permP.Rd |only Temporal-0.2.0/Temporal/man/resample.Rd |only Temporal-0.2.0/Temporal/man/survFunc.Rd |only Temporal-0.2.0/Temporal/man/survLogLik.Rd |only Temporal-0.2.0/Temporal/src |only Temporal-0.2.0/Temporal/vignettes/Temporal_cache/html/unnamed-chunk-10_eb5f813354ed9d108e1d24011e3cfd5b.RData |only Temporal-0.2.0/Temporal/vignettes/Temporal_cache/html/unnamed-chunk-10_eb5f813354ed9d108e1d24011e3cfd5b.rdb |only Temporal-0.2.0/Temporal/vignettes/Temporal_cache/html/unnamed-chunk-10_eb5f813354ed9d108e1d24011e3cfd5b.rdx |only Temporal-0.2.0/Temporal/vignettes/Temporal_cache/html/unnamed-chunk-1_a9af44c7c886f8c59d8a8c48d24e42b8.RData |only Temporal-0.2.0/Temporal/vignettes/Temporal_cache/html/unnamed-chunk-1_a9af44c7c886f8c59d8a8c48d24e42b8.rdb |only Temporal-0.2.0/Temporal/vignettes/Temporal_cache/html/unnamed-chunk-1_a9af44c7c886f8c59d8a8c48d24e42b8.rdx |only Temporal-0.2.0/Temporal/vignettes/Temporal_cache/html/unnamed-chunk-2_f15aede56880d2086efc00656df86955.RData |only Temporal-0.2.0/Temporal/vignettes/Temporal_cache/html/unnamed-chunk-2_f15aede56880d2086efc00656df86955.rdb |only Temporal-0.2.0/Temporal/vignettes/Temporal_cache/html/unnamed-chunk-2_f15aede56880d2086efc00656df86955.rdx |only Temporal-0.2.0/Temporal/vignettes/Temporal_cache/html/unnamed-chunk-3_1903083a9f86100765bd893b0e986c3b.RData |only Temporal-0.2.0/Temporal/vignettes/Temporal_cache/html/unnamed-chunk-3_1903083a9f86100765bd893b0e986c3b.rdb |only Temporal-0.2.0/Temporal/vignettes/Temporal_cache/html/unnamed-chunk-3_1903083a9f86100765bd893b0e986c3b.rdx |only Temporal-0.2.0/Temporal/vignettes/Temporal_cache/html/unnamed-chunk-4_9a71c0ca16ea8a97bff2aaddd8d16d5a.RData |only Temporal-0.2.0/Temporal/vignettes/Temporal_cache/html/unnamed-chunk-4_9a71c0ca16ea8a97bff2aaddd8d16d5a.rdb |only Temporal-0.2.0/Temporal/vignettes/Temporal_cache/html/unnamed-chunk-4_9a71c0ca16ea8a97bff2aaddd8d16d5a.rdx |only Temporal-0.2.0/Temporal/vignettes/Temporal_cache/html/unnamed-chunk-5_03c8e31cdc7a42843e2781ed6be45a82.RData |only Temporal-0.2.0/Temporal/vignettes/Temporal_cache/html/unnamed-chunk-5_03c8e31cdc7a42843e2781ed6be45a82.rdb |only Temporal-0.2.0/Temporal/vignettes/Temporal_cache/html/unnamed-chunk-5_03c8e31cdc7a42843e2781ed6be45a82.rdx |only Temporal-0.2.0/Temporal/vignettes/Temporal_cache/html/unnamed-chunk-6_04261f3a31629d629d00f3aa509e7c1d.RData |only Temporal-0.2.0/Temporal/vignettes/Temporal_cache/html/unnamed-chunk-6_04261f3a31629d629d00f3aa509e7c1d.rdb |only Temporal-0.2.0/Temporal/vignettes/Temporal_cache/html/unnamed-chunk-6_04261f3a31629d629d00f3aa509e7c1d.rdx |only Temporal-0.2.0/Temporal/vignettes/Temporal_cache/html/unnamed-chunk-7_540fd1e16350896fbb504f3ef03d1030.RData |only Temporal-0.2.0/Temporal/vignettes/Temporal_cache/html/unnamed-chunk-7_540fd1e16350896fbb504f3ef03d1030.rdb |only Temporal-0.2.0/Temporal/vignettes/Temporal_cache/html/unnamed-chunk-7_540fd1e16350896fbb504f3ef03d1030.rdx |only Temporal-0.2.0/Temporal/vignettes/Temporal_cache/html/unnamed-chunk-8_2259ad3f017c27356a60341b90c1c067.RData |only Temporal-0.2.0/Temporal/vignettes/Temporal_cache/html/unnamed-chunk-8_2259ad3f017c27356a60341b90c1c067.rdb |only Temporal-0.2.0/Temporal/vignettes/Temporal_cache/html/unnamed-chunk-8_2259ad3f017c27356a60341b90c1c067.rdx |only Temporal-0.2.0/Temporal/vignettes/Temporal_cache/html/unnamed-chunk-9_d064c970016aa3aa0c1dfb43163f518e.RData |only Temporal-0.2.0/Temporal/vignettes/Temporal_cache/html/unnamed-chunk-9_d064c970016aa3aa0c1dfb43163f518e.rdb |only Temporal-0.2.0/Temporal/vignettes/Temporal_cache/html/unnamed-chunk-9_d064c970016aa3aa0c1dfb43163f518e.rdx |only Temporal-0.3.0/Temporal/DESCRIPTION | 28 Temporal-0.3.0/Temporal/MD5 | 204 +- Temporal-0.3.0/Temporal/NAMESPACE | 35 Temporal-0.3.0/Temporal/R/Class.R | 259 +- Temporal-0.3.0/Temporal/R/Comparison.R | 917 ++++------ Temporal-0.3.0/Temporal/R/DataGen.R | 413 ++-- Temporal-0.3.0/Temporal/R/Exponential.R | 196 +- Temporal-0.3.0/Temporal/R/Fitting.R | 171 + Temporal-0.3.0/Temporal/R/Gamma.R | 515 ++--- Temporal-0.3.0/Temporal/R/GenGamma.R | 682 ++++--- Temporal-0.3.0/Temporal/R/Inputs.R | 394 ++-- Temporal-0.3.0/Temporal/R/LogLik.R | 215 +- Temporal-0.3.0/Temporal/R/LogNormal.R | 440 ++-- Temporal-0.3.0/Temporal/R/NewtonRaphson.R |only Temporal-0.3.0/Temporal/R/PackageHelp.R | 12 Temporal-0.3.0/Temporal/R/RMST.R | 141 - Temporal-0.3.0/Temporal/R/SurvFunctions.R |only Temporal-0.3.0/Temporal/R/Weibull.R | 398 ++-- Temporal-0.3.0/Temporal/build/vignette.rds |binary Temporal-0.3.0/Temporal/inst/doc/Temporal.R | 216 +- Temporal-0.3.0/Temporal/inst/doc/Temporal.Rmd | 221 +- Temporal-0.3.0/Temporal/inst/doc/Temporal.pdf |only Temporal-0.3.0/Temporal/man/CheckArm.Rd |only Temporal-0.3.0/Temporal/man/CheckDist.Rd |only Temporal-0.3.0/Temporal/man/CheckInit.Rd |only Temporal-0.3.0/Temporal/man/CheckStatus.Rd |only Temporal-0.3.0/Temporal/man/CheckTheta.Rd |only Temporal-0.3.0/Temporal/man/CompParaSurv.Rd |only Temporal-0.3.0/Temporal/man/ContrastLocs.Rd |only Temporal-0.3.0/Temporal/man/ContrastRMSTs.Rd |only Temporal-0.3.0/Temporal/man/DefaultParam.Rd |only Temporal-0.3.0/Temporal/man/DistProperName.Rd |only Temporal-0.3.0/Temporal/man/EstDiff.Rd |only Temporal-0.3.0/Temporal/man/EstRatio.Rd |only Temporal-0.3.0/Temporal/man/ExtractObsEst.Rd |only Temporal-0.3.0/Temporal/man/FitExp.Rd |only Temporal-0.3.0/Temporal/man/FitGamma.Rd |only Temporal-0.3.0/Temporal/man/FitGammaComplete.Rd |only Temporal-0.3.0/Temporal/man/FitGenGamma.Rd |only Temporal-0.3.0/Temporal/man/FitGenGammaComplete.Rd |only Temporal-0.3.0/Temporal/man/FitLogNormComplete.Rd |only Temporal-0.3.0/Temporal/man/FitLogNormal.Rd |only Temporal-0.3.0/Temporal/man/FitParaSurv.Rd |only Temporal-0.3.0/Temporal/man/FitWeibull.Rd |only Temporal-0.3.0/Temporal/man/GammaInfo.Rd |only Temporal-0.3.0/Temporal/man/GammaScore.Rd |only Temporal-0.3.0/Temporal/man/GenData.Rd |only Temporal-0.3.0/Temporal/man/GenGammaObsInfo.Rd |only Temporal-0.3.0/Temporal/man/GenGammaProfileLogLik.Rd |only Temporal-0.3.0/Temporal/man/GenGammaRate.Rd |only Temporal-0.3.0/Temporal/man/GenGammaScore.Rd |only Temporal-0.3.0/Temporal/man/GenGammaShape.Rd |only Temporal-0.3.0/Temporal/man/LogNormInfo.Rd |only Temporal-0.3.0/Temporal/man/LogNormScore.Rd |only Temporal-0.3.0/Temporal/man/NRUpdate.Rd |only Temporal-0.3.0/Temporal/man/NewtonRaphson.Rd |only Temporal-0.3.0/Temporal/man/ParaRMST.Rd |only Temporal-0.3.0/Temporal/man/PermP.Rd |only Temporal-0.3.0/Temporal/man/QF.Rd |only Temporal-0.3.0/Temporal/man/RoundDF.Rd |only Temporal-0.3.0/Temporal/man/SurvFunc.Rd |only Temporal-0.3.0/Temporal/man/SurvLogLik.Rd |only Temporal-0.3.0/Temporal/man/Temporal.Rd | 4 Temporal-0.3.0/Temporal/man/WeiInfo.Rd |only Temporal-0.3.0/Temporal/man/WeiInit.Rd |only Temporal-0.3.0/Temporal/man/WeiRate.Rd |only Temporal-0.3.0/Temporal/man/WeiScore.Rd |only Temporal-0.3.0/Temporal/man/qWeibull.Rd | 2 Temporal-0.3.0/Temporal/man/rGamma.Rd | 4 Temporal-0.3.0/Temporal/man/rGenGamma.Rd | 4 Temporal-0.3.0/Temporal/man/rLogNormal.Rd | 4 Temporal-0.3.0/Temporal/man/rWeibull.Rd | 4 Temporal-0.3.0/Temporal/tests |only Temporal-0.3.0/Temporal/vignettes/Temporal.Rmd | 221 +- Temporal-0.3.0/Temporal/vignettes/Temporal.html |only Temporal-0.3.0/Temporal/vignettes/Temporal_cache/html/unnamed-chunk-10_1ebed23b582354ba9ee78389efa03bfc.RData |only Temporal-0.3.0/Temporal/vignettes/Temporal_cache/html/unnamed-chunk-10_1ebed23b582354ba9ee78389efa03bfc.rdb |only Temporal-0.3.0/Temporal/vignettes/Temporal_cache/html/unnamed-chunk-10_1ebed23b582354ba9ee78389efa03bfc.rdx |only Temporal-0.3.0/Temporal/vignettes/Temporal_cache/html/unnamed-chunk-1_d590d69f044b2b80809ff46dcd6e4dcd.RData |only Temporal-0.3.0/Temporal/vignettes/Temporal_cache/html/unnamed-chunk-1_d590d69f044b2b80809ff46dcd6e4dcd.rdb |only Temporal-0.3.0/Temporal/vignettes/Temporal_cache/html/unnamed-chunk-1_d590d69f044b2b80809ff46dcd6e4dcd.rdx |only Temporal-0.3.0/Temporal/vignettes/Temporal_cache/html/unnamed-chunk-2_dedff1cdaf7c0dfe3f9639dc4d131e35.RData |only Temporal-0.3.0/Temporal/vignettes/Temporal_cache/html/unnamed-chunk-2_dedff1cdaf7c0dfe3f9639dc4d131e35.rdb |only Temporal-0.3.0/Temporal/vignettes/Temporal_cache/html/unnamed-chunk-2_dedff1cdaf7c0dfe3f9639dc4d131e35.rdx |only Temporal-0.3.0/Temporal/vignettes/Temporal_cache/html/unnamed-chunk-3_21295a6f5ace0cb0d39642257af2f76c.RData |only Temporal-0.3.0/Temporal/vignettes/Temporal_cache/html/unnamed-chunk-3_21295a6f5ace0cb0d39642257af2f76c.rdb |only Temporal-0.3.0/Temporal/vignettes/Temporal_cache/html/unnamed-chunk-3_21295a6f5ace0cb0d39642257af2f76c.rdx |only Temporal-0.3.0/Temporal/vignettes/Temporal_cache/html/unnamed-chunk-4_18bb35d708d7de6698aeb4ce0a1acb38.RData |only Temporal-0.3.0/Temporal/vignettes/Temporal_cache/html/unnamed-chunk-4_18bb35d708d7de6698aeb4ce0a1acb38.rdb |only Temporal-0.3.0/Temporal/vignettes/Temporal_cache/html/unnamed-chunk-4_18bb35d708d7de6698aeb4ce0a1acb38.rdx |only Temporal-0.3.0/Temporal/vignettes/Temporal_cache/html/unnamed-chunk-5_bdc87293717360360280d227cc7da1e2.RData |only Temporal-0.3.0/Temporal/vignettes/Temporal_cache/html/unnamed-chunk-5_bdc87293717360360280d227cc7da1e2.rdb |only Temporal-0.3.0/Temporal/vignettes/Temporal_cache/html/unnamed-chunk-5_bdc87293717360360280d227cc7da1e2.rdx |only Temporal-0.3.0/Temporal/vignettes/Temporal_cache/html/unnamed-chunk-6_4c7cdde1ec2b8b943a1c2f887ce08558.RData |only Temporal-0.3.0/Temporal/vignettes/Temporal_cache/html/unnamed-chunk-6_4c7cdde1ec2b8b943a1c2f887ce08558.rdb |only Temporal-0.3.0/Temporal/vignettes/Temporal_cache/html/unnamed-chunk-6_4c7cdde1ec2b8b943a1c2f887ce08558.rdx |only Temporal-0.3.0/Temporal/vignettes/Temporal_cache/html/unnamed-chunk-7_c40b3e8d91f3d4aa37edc6afb7e40115.RData |only Temporal-0.3.0/Temporal/vignettes/Temporal_cache/html/unnamed-chunk-7_c40b3e8d91f3d4aa37edc6afb7e40115.rdb |only Temporal-0.3.0/Temporal/vignettes/Temporal_cache/html/unnamed-chunk-7_c40b3e8d91f3d4aa37edc6afb7e40115.rdx |only Temporal-0.3.0/Temporal/vignettes/Temporal_cache/html/unnamed-chunk-8_f5905eac76f8a00bfad7fd79e0f7fb79.RData |only Temporal-0.3.0/Temporal/vignettes/Temporal_cache/html/unnamed-chunk-8_f5905eac76f8a00bfad7fd79e0f7fb79.rdb |only Temporal-0.3.0/Temporal/vignettes/Temporal_cache/html/unnamed-chunk-8_f5905eac76f8a00bfad7fd79e0f7fb79.rdx |only Temporal-0.3.0/Temporal/vignettes/Temporal_cache/html/unnamed-chunk-9_cc9a1ebf9226bd1215628a09e75558cd.RData |only Temporal-0.3.0/Temporal/vignettes/Temporal_cache/html/unnamed-chunk-9_cc9a1ebf9226bd1215628a09e75558cd.rdb |only Temporal-0.3.0/Temporal/vignettes/Temporal_cache/html/unnamed-chunk-9_cc9a1ebf9226bd1215628a09e75558cd.rdx |only 168 files changed, 3023 insertions(+), 2677 deletions(-)
Title: Stable Iterative Variable Selection
Description: An iterative feature selection method (manuscript submitted) that
internally utilizes various Machine Learning methods that have embedded
feature reduction in order to shrink down the feature space into a small
and yet robust set.
Author: Mehrad Mahmoudian [aut, cre] (<https://orcid.org/0000-0001-7650-1862>),
Mikko Venäläinen [aut, rev] (<https://orcid.org/0000-0003-1777-4259>),
Riku Klèn [aut, ths] (<https://orcid.org/0000-0002-0982-8360>),
Laura Elo [aut, ths, fnd] (<https://orcid.org/0000-0001-5648-4532>)
Maintainer: Mehrad Mahmoudian <mehrad.mahmoudian@utu.fi>
Diff between sivs versions 0.2.4 dated 2020-11-04 and 0.2.5 dated 2021-07-20
DESCRIPTION | 12 ++++++------ MD5 | 10 ++++++---- NEWS.md | 6 +++++- R/zzz.R |only build/vignette.rds |binary inst/CITATION |only inst/doc/vignette_simple_usage.html | 2 +- 7 files changed, 18 insertions(+), 12 deletions(-)
Title: Linking Patient-Reported Outcomes Measures
Description: Perform scale linking to establish relationships between instruments
that measure similar constructs according to the PROsetta Stone methodology, as in Choi, Schalet, Cook, & Cella (2014) <doi:10.1037/a0035768>.
Author: Seung W. Choi [aut, cre] (<https://orcid.org/0000-0003-4777-5420>),
Sangdon Lim [aut] (<https://orcid.org/0000-0002-2988-014X>),
Benjamin D. Schalet [ctb],
Aaron J. Kaat [ctb],
David Cella [ctb]
Maintainer: Seung W. Choi <schoi@austin.utexas.edu>
Diff between PROsetta versions 0.3.0 dated 2021-04-13 and 0.3.2 dated 2021-07-20
PROsetta-0.3.0/PROsetta/vignettes/PROsetta_cache/html/alpha2_98f4fd32682870361e0bb66173357335.RData |only PROsetta-0.3.0/PROsetta/vignettes/PROsetta_cache/html/alpha2_98f4fd32682870361e0bb66173357335.rdb |only PROsetta-0.3.0/PROsetta/vignettes/PROsetta_cache/html/alpha2_98f4fd32682870361e0bb66173357335.rdx |only PROsetta-0.3.0/PROsetta/vignettes/PROsetta_cache/html/alpha_8fa74ac8ea24875388066ef8607e0a65.RData |only PROsetta-0.3.0/PROsetta/vignettes/PROsetta_cache/html/alpha_8fa74ac8ea24875388066ef8607e0a65.rdb |only PROsetta-0.3.0/PROsetta/vignettes/PROsetta_cache/html/alpha_8fa74ac8ea24875388066ef8607e0a65.rdx |only PROsetta-0.3.0/PROsetta/vignettes/PROsetta_cache/html/calib2_d95c7415d39e21c40ea209d019117c33.RData |only PROsetta-0.3.0/PROsetta/vignettes/PROsetta_cache/html/calib2_d95c7415d39e21c40ea209d019117c33.rdb |only PROsetta-0.3.0/PROsetta/vignettes/PROsetta_cache/html/calib2_d95c7415d39e21c40ea209d019117c33.rdx |only PROsetta-0.3.0/PROsetta/vignettes/PROsetta_cache/html/calib3_d087ed6539a60d4e52dd281e95a5ea3e.RData |only PROsetta-0.3.0/PROsetta/vignettes/PROsetta_cache/html/calib3_d087ed6539a60d4e52dd281e95a5ea3e.rdb |only PROsetta-0.3.0/PROsetta/vignettes/PROsetta_cache/html/calib3_d087ed6539a60d4e52dd281e95a5ea3e.rdx |only PROsetta-0.3.0/PROsetta/vignettes/PROsetta_cache/html/calib_34920029d4d7e4c50bbcbe1fba99e094.RData |only PROsetta-0.3.0/PROsetta/vignettes/PROsetta_cache/html/calib_34920029d4d7e4c50bbcbe1fba99e094.rdb |only PROsetta-0.3.0/PROsetta/vignettes/PROsetta_cache/html/calib_34920029d4d7e4c50bbcbe1fba99e094.rdx |only PROsetta-0.3.0/PROsetta/vignettes/PROsetta_cache/html/eqp_dir_4332210b6c2e5aa0a77ff1b2c0b8c20b.RData |only PROsetta-0.3.0/PROsetta/vignettes/PROsetta_cache/html/eqp_dir_4332210b6c2e5aa0a77ff1b2c0b8c20b.rdb |only PROsetta-0.3.0/PROsetta/vignettes/PROsetta_cache/html/eqp_dir_4332210b6c2e5aa0a77ff1b2c0b8c20b.rdx |only PROsetta-0.3.0/PROsetta/vignettes/PROsetta_cache/html/eqp_raw_caa6ea3d62e40fadf43674e0c30b3b8c.RData |only PROsetta-0.3.0/PROsetta/vignettes/PROsetta_cache/html/eqp_raw_caa6ea3d62e40fadf43674e0c30b3b8c.rdb |only PROsetta-0.3.0/PROsetta/vignettes/PROsetta_cache/html/eqp_raw_caa6ea3d62e40fadf43674e0c30b3b8c.rdx |only PROsetta-0.3.0/PROsetta/vignettes/PROsetta_cache/html/fixedpar_53231c8322e1991cd02d4cb97b8219b1.RData |only PROsetta-0.3.0/PROsetta/vignettes/PROsetta_cache/html/fixedpar_53231c8322e1991cd02d4cb97b8219b1.rdb |only PROsetta-0.3.0/PROsetta/vignettes/PROsetta_cache/html/fixedpar_53231c8322e1991cd02d4cb97b8219b1.rdx |only PROsetta-0.3.0/PROsetta/vignettes/PROsetta_cache/html/mirt_coef_bedc528f8c836ec9571a91f1f9cdd21d.RData |only PROsetta-0.3.0/PROsetta/vignettes/PROsetta_cache/html/mirt_coef_bedc528f8c836ec9571a91f1f9cdd21d.rdb |only PROsetta-0.3.0/PROsetta/vignettes/PROsetta_cache/html/mirt_coef_bedc528f8c836ec9571a91f1f9cdd21d.rdx |only PROsetta-0.3.0/PROsetta/vignettes/PROsetta_cache/html/mirt_plot_1a690e5ddb6abba59ca7f4d653b116ba.RData |only PROsetta-0.3.0/PROsetta/vignettes/PROsetta_cache/html/mirt_plot_1a690e5ddb6abba59ca7f4d653b116ba.rdb |only PROsetta-0.3.0/PROsetta/vignettes/PROsetta_cache/html/mirt_plot_1a690e5ddb6abba59ca7f4d653b116ba.rdx |only PROsetta-0.3.0/PROsetta/vignettes/PROsetta_cache/html/omega_5ba422f8be48767527b63622fb0f3dd0.RData |only PROsetta-0.3.0/PROsetta/vignettes/PROsetta_cache/html/omega_5ba422f8be48767527b63622fb0f3dd0.rdb |only PROsetta-0.3.0/PROsetta/vignettes/PROsetta_cache/html/omega_5ba422f8be48767527b63622fb0f3dd0.rdx |only PROsetta-0.3.0/PROsetta/vignettes/PROsetta_cache/html/sl_5e2cba0fbb00f813a25440affc5bb3fb.RData |only PROsetta-0.3.0/PROsetta/vignettes/PROsetta_cache/html/sl_5e2cba0fbb00f813a25440affc5bb3fb.rdb |only PROsetta-0.3.0/PROsetta/vignettes/PROsetta_cache/html/sl_5e2cba0fbb00f813a25440affc5bb3fb.rdx |only PROsetta-0.3.2/PROsetta/DESCRIPTION | 8 PROsetta-0.3.2/PROsetta/MD5 | 90 PROsetta-0.3.2/PROsetta/NEWS.md | 13 PROsetta-0.3.2/PROsetta/R/configPROsetta.R | 7 PROsetta-0.3.2/PROsetta/R/core_functions.R | 20 PROsetta-0.3.2/PROsetta/R/linking_functions.R | 4 PROsetta-0.3.2/PROsetta/README.md | 2 PROsetta-0.3.2/PROsetta/build/vignette.rds |binary PROsetta-0.3.2/PROsetta/inst/CITATION | 18 PROsetta-0.3.2/PROsetta/inst/doc/PROsetta.html | 1623 ---------- PROsetta-0.3.2/PROsetta/vignettes/PROsetta_cache/html/alpha2_6f70d0ac18a2fe8212be8c6d88eeb64f.RData |only PROsetta-0.3.2/PROsetta/vignettes/PROsetta_cache/html/alpha2_6f70d0ac18a2fe8212be8c6d88eeb64f.rdb |only PROsetta-0.3.2/PROsetta/vignettes/PROsetta_cache/html/alpha2_6f70d0ac18a2fe8212be8c6d88eeb64f.rdx |only PROsetta-0.3.2/PROsetta/vignettes/PROsetta_cache/html/alpha_33a286d790e7d6f62c5c83619005b7ee.RData |only PROsetta-0.3.2/PROsetta/vignettes/PROsetta_cache/html/alpha_33a286d790e7d6f62c5c83619005b7ee.rdb |only PROsetta-0.3.2/PROsetta/vignettes/PROsetta_cache/html/alpha_33a286d790e7d6f62c5c83619005b7ee.rdx |only PROsetta-0.3.2/PROsetta/vignettes/PROsetta_cache/html/calib2_4405ad836ca5d8201da737538502ac9b.RData |only PROsetta-0.3.2/PROsetta/vignettes/PROsetta_cache/html/calib2_4405ad836ca5d8201da737538502ac9b.rdb |only PROsetta-0.3.2/PROsetta/vignettes/PROsetta_cache/html/calib2_4405ad836ca5d8201da737538502ac9b.rdx |only PROsetta-0.3.2/PROsetta/vignettes/PROsetta_cache/html/calib3_6a7747e29e64f97141db20f14df38349.RData |only PROsetta-0.3.2/PROsetta/vignettes/PROsetta_cache/html/calib3_6a7747e29e64f97141db20f14df38349.rdb |only PROsetta-0.3.2/PROsetta/vignettes/PROsetta_cache/html/calib3_6a7747e29e64f97141db20f14df38349.rdx |only PROsetta-0.3.2/PROsetta/vignettes/PROsetta_cache/html/calib_df03b7c490b4ae7fa7f428e120a6b2c9.RData |only PROsetta-0.3.2/PROsetta/vignettes/PROsetta_cache/html/calib_df03b7c490b4ae7fa7f428e120a6b2c9.rdb |only PROsetta-0.3.2/PROsetta/vignettes/PROsetta_cache/html/calib_df03b7c490b4ae7fa7f428e120a6b2c9.rdx |only PROsetta-0.3.2/PROsetta/vignettes/PROsetta_cache/html/eqp_dir_5953382137a17e3690c9d5e089fddaf8.RData |only PROsetta-0.3.2/PROsetta/vignettes/PROsetta_cache/html/eqp_dir_5953382137a17e3690c9d5e089fddaf8.rdb |only PROsetta-0.3.2/PROsetta/vignettes/PROsetta_cache/html/eqp_dir_5953382137a17e3690c9d5e089fddaf8.rdx |only PROsetta-0.3.2/PROsetta/vignettes/PROsetta_cache/html/eqp_raw_d1b0ee5d942dbffa889db29eca96808d.RData |only PROsetta-0.3.2/PROsetta/vignettes/PROsetta_cache/html/eqp_raw_d1b0ee5d942dbffa889db29eca96808d.rdb |only PROsetta-0.3.2/PROsetta/vignettes/PROsetta_cache/html/eqp_raw_d1b0ee5d942dbffa889db29eca96808d.rdx |only PROsetta-0.3.2/PROsetta/vignettes/PROsetta_cache/html/fixedpar_0347c7e47402e68c67355f81664f568e.RData |only PROsetta-0.3.2/PROsetta/vignettes/PROsetta_cache/html/fixedpar_0347c7e47402e68c67355f81664f568e.rdb |only PROsetta-0.3.2/PROsetta/vignettes/PROsetta_cache/html/fixedpar_0347c7e47402e68c67355f81664f568e.rdx |only PROsetta-0.3.2/PROsetta/vignettes/PROsetta_cache/html/mirt_coef_8198eeba34ac3d555099f011eece1da8.RData |only PROsetta-0.3.2/PROsetta/vignettes/PROsetta_cache/html/mirt_coef_8198eeba34ac3d555099f011eece1da8.rdb |only PROsetta-0.3.2/PROsetta/vignettes/PROsetta_cache/html/mirt_coef_8198eeba34ac3d555099f011eece1da8.rdx |only PROsetta-0.3.2/PROsetta/vignettes/PROsetta_cache/html/mirt_plot_52346f1fcf632650ceaa451dcaa9e99d.RData |only PROsetta-0.3.2/PROsetta/vignettes/PROsetta_cache/html/mirt_plot_52346f1fcf632650ceaa451dcaa9e99d.rdb |only PROsetta-0.3.2/PROsetta/vignettes/PROsetta_cache/html/mirt_plot_52346f1fcf632650ceaa451dcaa9e99d.rdx |only PROsetta-0.3.2/PROsetta/vignettes/PROsetta_cache/html/omega_f5504932ddb36fc9c3320b92190b3afa.RData |only PROsetta-0.3.2/PROsetta/vignettes/PROsetta_cache/html/omega_f5504932ddb36fc9c3320b92190b3afa.rdb |only PROsetta-0.3.2/PROsetta/vignettes/PROsetta_cache/html/omega_f5504932ddb36fc9c3320b92190b3afa.rdx |only PROsetta-0.3.2/PROsetta/vignettes/PROsetta_cache/html/sl_1a39b85b62664d6965efbb8e5504c217.RData |only PROsetta-0.3.2/PROsetta/vignettes/PROsetta_cache/html/sl_1a39b85b62664d6965efbb8e5504c217.rdb |only PROsetta-0.3.2/PROsetta/vignettes/PROsetta_cache/html/sl_1a39b85b62664d6965efbb8e5504c217.rdx |only 82 files changed, 252 insertions(+), 1533 deletions(-)
Title: Robust Analysis for Absolute Abundance in Microbiome
Description: A novel approach to make inference on the association of covariates with the absolute abundance (AA) of 'microbiome' in an ecosystem. It can be also directly applied to relative abundance (RA) data to make inference on AA (even if AA data is not available) because the ratio of two RA is equal ratio of their AA. This algorithm can estimate and test the associations of interest while adjusting for potential 'confounders'. The estimates of this method have easy interpretation like a typical regression analysis. High-dimensional covariates are handled with regularization and it is implemented by parallel computing. This algorithm finds optimal reference 'taxa/OTU (Operational Taxonomic Unit)/ASV (Amplicon Sequence Bariant)' and uses permutation to control FDR (False Discovery Rate).
Author: Zhigang Li [aut, cre]
Maintainer: Zhigang Li <zhigang.li@ufl.edu>
Diff between IFAA versions 1.0.1 dated 2021-01-06 and 1.0.2 dated 2021-07-20
DESCRIPTION | 6 MD5 | 70 +-- NAMESPACE | 44 +- NEWS.md | 20 - R/AIcalculation.R | 212 +++++----- R/IFAAfunc.R | 432 ++++++++++----------- R/MZILN.R | 296 +++++++------- R/allUserDefinedFuncs.R | 10 R/bootResuHDCI.R | 230 +++++------ R/cvPicas.R | 262 ++++++------- R/data.R | 28 - R/dataInfo.R | 236 +++++------ R/dataRecovTrans.R | 270 ++++++------- R/dataSparsChek.R | 78 +-- R/getScrResu.R | 340 ++++++++--------- R/metaData.R | 470 +++++++++++------------ R/originDataScreen.R | 526 +++++++++++++------------- R/regulariz.R | 506 ++++++++++++------------- R/regulariz_MZILN.R | 288 +++++++------- R/runBootLassHDCI.R | 352 ++++++++--------- R/runPiccas.R | 188 ++++----- R/runScrParal.R | 954 ++++++++++++++++++++++++------------------------ R/twoMeanClus.R | 82 ++-- R/vecRecover.R | 102 ++--- R/xBetaAndResidu.R | 404 ++++++++++---------- README.md | 138 +++--- build/IFAA.pdf |binary build/vignette.rds |binary inst/doc/IFAAvig.R | 134 +++--- inst/doc/IFAAvig.Rmd | 544 +++++++++++++-------------- inst/doc/IFAAvig.pdf |binary man/IFAA.Rd | 304 +++++++-------- man/MZILN.Rd | 204 +++++----- man/dataC.Rd | 32 - man/dataM.Rd | 32 - vignettes/IFAAvig.Rmd | 544 +++++++++++++-------------- 36 files changed, 4171 insertions(+), 4167 deletions(-)
Title: Side Grammar Graphics
Description: The grammar of graphics as shown in 'ggplot2' has provided
an expressive API for users to build plots. 'ggside' extends 'ggplot2'
by allowing users to add graphical information about one of the main panel's
axis using a familiar 'ggplot2' style API with tidy data. This package is
particularly useful for visualizing metadata on a discrete axis, or summary
graphics on a continuous axis such as a boxplot or a density distribution.
Author: Justin Landis [aut, cre]
Maintainer: Justin Landis <jtlandis314@gmail.com>
Diff between ggside versions 0.1.0 dated 2021-05-17 and 0.1.1 dated 2021-07-20
ggside-0.1.0/ggside/tests/figs |only ggside-0.1.1/ggside/DESCRIPTION | 10 ggside-0.1.1/ggside/MD5 | 235 ++++----- ggside-0.1.1/ggside/NEWS.md | 6 ggside-0.1.1/ggside/R/Side_Facet.R | 15 ggside-0.1.1/ggside/R/aab-other_utils.r | 6 ggside-0.1.1/ggside/R/add_gg.R | 9 ggside-0.1.1/ggside/R/geom-sidedensity.r | 1 ggside-0.1.1/ggside/R/plot-construction.R | 111 +++- ggside-0.1.1/ggside/R/scales-sides-.R | 40 + ggside-0.1.1/ggside/R/sideLayer.R | 128 +++++ ggside-0.1.1/ggside/README.md | 3 ggside-0.1.1/ggside/build/vignette.rds |binary ggside-0.1.1/ggside/inst/WORDLIST | 1 ggside-0.1.1/ggside/inst/doc/ggside_aes_mapping.html | 12 ggside-0.1.1/ggside/inst/doc/ggside_basic_usage.html | 250 ++++++++-- ggside-0.1.1/ggside/man/figures/README-example-1.png |binary ggside-0.1.1/ggside/man/figures/README-unnamed-chunk-2-1.png |binary ggside-0.1.1/ggside/man/geom_xsidetext.Rd | 3 ggside-0.1.1/ggside/man/ggside-scales-continuous.Rd | 40 + ggside-0.1.1/ggside/man/ggside-scales-discrete.Rd | 19 ggside-0.1.1/ggside/tests/testthat/_snaps |only ggside-0.1.1/ggside/tests/testthat/test_continuous_date_axis.R |only ggside-0.1.1/ggside/tests/testthat/test_non_aes_mapping_legend.R |only ggside-0.1.1/ggside/tests/testthat/test_vdiff_irisScatter.R | 2 25 files changed, 685 insertions(+), 206 deletions(-)
Title: Regional Vulnerability Index
Description: The Regional Vulnerability Index (RVI), a statistical measure of brain structural abnormality, quantifies an individual's similarity to the expected pattern of deficits in schizophrenia (Kochunov P, Fan F, Ryan MC, et al. (2020) <doi:10.1002/hbm.25045>).
Author: Peter Kochunov [aut],
Si Gao [aut, cre],
Fatima Talib [aut]
Maintainer: Si Gao <sgao@som.umaryland.edu>
Diff between RVIpkg versions 0.2.3 dated 2021-01-28 and 0.2.5 dated 2021-07-20
DESCRIPTION | 6 +++--- MD5 | 30 +++++++++++++++--------------- R/Ave_func.R | 2 +- R/EP.GM.R | 3 ++- R/EP.Subcortical.R | 3 ++- R/EP.WM.R | 3 ++- R/RVI_func.R | 15 +++++++++++---- R/sysdata.rda |binary build/partial.rdb |binary data/EP.GM.rda |binary data/EP.Subcortical.rda |binary data/EP.WM.rda |binary man/EP.GM.Rd | 3 ++- man/EP.Subcortical.Rd | 3 ++- man/EP.WM.Rd | 3 ++- man/RVI_func.Rd | 7 ++++--- 16 files changed, 46 insertions(+), 32 deletions(-)
Title: Statistical Framework to Define Subgroups in Complex Datasets
Description: High-dimensional datasets that do not exhibit a clear intrinsic clustered structure pose a challenge to conventional clustering algorithms. For this reason, we developed an unsupervised framework that helps scientists to better subgroup their datasets based on visual cues, please see Gao S, Mutter S, Casey A, Makinen V-P (2019) Numero: a statistical framework to define multivariable subgroups in complex population-based datasets, Int J Epidemiology, 48:369-37, <doi:10.1093/ije/dyy113>. The framework includes the necessary functions to construct a self-organizing map of the data, to evaluate the statistical significance of the observed data patterns, and to visualize the results.
Author: Song Gao [aut],
Stefan Mutter [aut],
Aaron E. Casey [aut],
Ville-Petteri Makinen [aut, cre]
Maintainer: Ville-Petteri Makinen <vpmakine@gmail.com>
Diff between Numero versions 1.8.1 dated 2021-07-13 and 1.8.2 dated 2021-07-20
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/numero.quality.R | 17 +++++++++++++---- inst/doc/intro.html | 48 ++++++++++++++++++++++++------------------------ 4 files changed, 44 insertions(+), 35 deletions(-)
More information about OpenABMCovid19 at CRAN
Permanent link
Title: USGS ScienceBase Tools
Description: Tools for interacting with U.S. Geological Survey ScienceBase
<https://www.sciencebase.gov> interfaces. ScienceBase is a data cataloging and
collaborative data management platform. Functions included for querying
ScienceBase, and creating and fetching datasets.
Author: David Blodgett [cre],
Luke Winslow [aut],
Scott Chamberlain [ctb],
Alison Appling [ctb],
Jordan Read [ctb]
Maintainer: David Blodgett <dblodgett@usgs.gov>
Diff between sbtools versions 1.1.16 dated 2021-07-01 and 1.1.17 dated 2021-07-20
DESCRIPTION | 6 - MD5 | 62 +++++++------- R/REST_helpers.R | 8 + R/current_session.R | 42 ++++----- R/identifier_exists.R | 57 ++++++------- R/item_exists.R | 59 ++++++------- R/item_get.R | 3 R/item_get_fields.R | 55 ++++++------ R/item_list_files.R | 6 - R/item_rename_files.R | 81 +++++++++---------- R/item_update_identifier.R | 178 ++++++++++++++++++++---------------------- R/item_upload_files.R | 3 R/query_item_identifier.R | 175 ++++++++++++++++++++--------------------- R/query_sb.R | 3 R/query_sb_datatype.R | 7 - R/query_sb_date.R | 91 ++++++++++----------- R/query_sb_doi.R | 3 R/query_sb_spatial.R | 4 R/query_sb_text.R | 3 R/sb_ping.R | 4 R/session_age.R | 77 ++++++++---------- R/session_renew.R | 115 +++++++++++++-------------- R/session_validate.R | 99 +++++++++++------------ R/set_endpoint.R | 94 ++++++++++------------ man/current_session.Rd | 3 man/identifier_exists.Rd | 4 man/item_list_files.Rd | 5 - man/item_update_identifier.Rd | 1 man/query_sb_spatial.Rd | 1 man/sb_datatypes.Rd | 3 man/sb_ping.Rd | 3 man/set_endpoint.Rd | 1 32 files changed, 619 insertions(+), 637 deletions(-)
Title: A Collection of Robust Statistical Methods
Description: A collection of robust statistical methods based on Wilcox' WRS functions. It implements robust t-tests (independent and dependent samples), robust ANOVA (including between-within subject designs), quantile ANOVA, robust correlation, robust mediation, and nonparametric ANCOVA models based on robust location measures.
Author: Patrick Mair [cre, aut],
Rand Wilcox [aut],
Indrajeet Patil [ctb]
Maintainer: Patrick Mair <mair@fas.harvard.edu>
Diff between WRS2 versions 1.1-2 dated 2021-07-02 and 1.1-3 dated 2021-07-20
DESCRIPTION | 8 ++++---- MD5 | 44 ++++++++++++++++++++++---------------------- R/ZYmediate.R | 2 +- R/akp.effect.R | 2 +- R/binband.R | 2 +- R/discmcp.R | 2 +- R/discstep.R | 2 +- R/lincon.R | 7 +++---- R/linconb.R | 2 +- R/med1way.R | 3 +-- R/med1way.crit.R | 2 +- R/pbcor.R | 2 +- R/qcomhd.R | 2 +- R/rmmcp.R | 2 +- R/t1way.R | 2 +- R/trimci.R | 2 +- R/trimcibt.R | 3 ++- R/wincor.R | 2 +- R/yuen.effect.ci.R | 2 +- R/yuen1.R | 2 +- inst/NEWS.Rd | 8 ++++++++ inst/doc/WRS2.pdf |binary man/t1way.Rd | 5 ++++- 23 files changed, 59 insertions(+), 49 deletions(-)
Title: Multidimensional Scaling
Description: Implements the following approaches for multidimensional scaling (MDS) based on stress minimization using majorization (smacof): ratio/interval/ordinal/spline MDS on symmetric dissimilarity matrices, MDS with external constraints on the configuration, individual differences scaling (idioscal, indscal), MDS with spherical restrictions, and ratio/interval/ordinal/spline unfolding (circular restrictions, row-conditional). Various tools and extensions like jackknife MDS, bootstrap MDS, permutation tests, MDS biplots, gravity models, unidimensional scaling, drift vectors (asymmetric MDS), classical scaling, and Procrustes are implemented as well.
Author: Patrick Mair [aut, cre],
Jan De Leeuw [aut],
Patrick J. F. Groenen [aut],
Ingwer Borg [ctb]
Maintainer: Patrick Mair <mair@fas.harvard.edu>
Diff between smacof versions 2.1-2 dated 2021-02-15 and 2.1-3 dated 2021-07-20
DESCRIPTION | 8 ++++---- MD5 | 22 +++++++++++----------- R/stress0.R | 16 +++++++++++++++- build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 18 ++++++++++-------- inst/NEWS.Rd | 7 +++++++ inst/doc/smacof.R | 2 +- inst/doc/smacof.Rnw | 2 +- inst/doc/smacof.pdf |binary man/stress0.Rd | 19 +++++++++++++++++-- vignettes/smacof.Rnw | 2 +- 12 files changed, 67 insertions(+), 29 deletions(-)
Title: Filtering and Assessing the Sample Size of Tracking Data
Description: Functions to filter GPS/Argos locations, as well as assessing the sample size for the analysis of animal distributions. The filters remove temporal and spatial duplicates, fixes located at a given height from estimated high tide line, and locations with high error as described in Shimada et al. (2012) <doi:10.3354/meps09747> and Shimada et al. (2016) <doi:10.1007/s00227-015-2771-0>. Sample size for the analysis of animal distributions can be assessed by the conventional area-based approach or the alternative probability-based approach as described in Shimada et al. (2021) <doi:10.1111/2041-210X.13506>.
Author: Takahiro Shimada
Maintainer: Takahiro Shimada <taka.shimada@gmail.com>
Diff between SDLfilter versions 2.1.0 dated 2021-04-03 and 2.1.1 dated 2021-07-20
DESCRIPTION | 8 +++---- MD5 | 40 ++++++++++++++++++------------------- NEWS | 6 +++++ NEWS.md | 4 +++ R/ddfilter_loop.R | 9 ++++---- R/ddfilter_speed.R | 8 ++++--- R/distfilter.R | 33 ++++++++++++++++-------------- R/dupfilter.R | 5 +++- R/dupfilter_qi.R | 11 +++++++--- R/dupfilter_space.R | 10 ++++++--- R/dupfilter_time.R | 11 +++++++--- R/track_param.R | 1 README.md | 39 ++++++++++++++++-------------------- build/partial.rdb |binary man/boot_overlap.Rd | 2 - man/dupfilter.Rd | 3 ++ man/dupfilter_qi.Rd | 2 + man/dupfilter_space.Rd | 3 ++ man/dupfilter_time.Rd | 3 ++ man/figures/unnamed-chunk-13-1.png |binary man/figures/unnamed-chunk-7-1.png |binary 21 files changed, 120 insertions(+), 78 deletions(-)
Title: Read Rectangular Text Data
Description: The goal of 'readr' is to provide a fast and
friendly way to read rectangular data (like 'csv', 'tsv', and 'fwf').
It is designed to flexibly parse many types of data found in the wild,
while still cleanly failing when data unexpectedly changes.
Author: Hadley Wickham [aut],
Jim Hester [aut, cre],
Romain Francois [ctb],
RStudio [cph, fnd],
https://github.com/mandreyel/ [cph] (mio library),
Jukka Jylänki [ctb, cph] (grisu3 implementation),
Mikkel Jørgensen [ctb, cph] (grisu3 implementation)
Maintainer: Jim Hester <jim.hester@rstudio.com>
Diff between readr versions 1.4.0 dated 2020-10-05 and 2.0.0 dated 2021-07-20
readr-1.4.0/readr/src/boost.h |only readr-1.4.0/readr/src/localtime.c |only readr-1.4.0/readr/src/localtime.h |only readr-1.4.0/readr/src/write_connection.cpp |only readr-1.4.0/readr/src/write_connection.h |only readr-1.4.0/readr/tests/testthat.R |only readr-2.0.0/readr/DESCRIPTION | 28 readr-2.0.0/readr/LICENSE | 341 -------- readr-2.0.0/readr/MD5 | 288 +++---- readr-2.0.0/readr/NAMESPACE | 11 readr-2.0.0/readr/NEWS.md | 168 ++++ readr-2.0.0/readr/R/callback.R | 26 readr-2.0.0/readr/R/col_types.R | 102 +- readr-2.0.0/readr/R/collectors.R | 88 +- readr-2.0.0/readr/R/cpp11.R | 54 - readr-2.0.0/readr/R/date-symbols.R | 2 readr-2.0.0/readr/R/edition.R |only readr-2.0.0/readr/R/file.R | 4 readr-2.0.0/readr/R/lines.R | 73 + readr-2.0.0/readr/R/locale.R | 28 readr-2.0.0/readr/R/melt_delim.R | 18 readr-2.0.0/readr/R/melt_delim_chunked.R | 12 readr-2.0.0/readr/R/melt_fwf.R | 26 readr-2.0.0/readr/R/melt_table.R | 53 - readr-2.0.0/readr/R/problems.R | 61 - readr-2.0.0/readr/R/rds.R | 23 readr-2.0.0/readr/R/read_builtin.R | 2 readr-2.0.0/readr/R/read_delim.R | 377 +++++++-- readr-2.0.0/readr/R/read_delim_chunked.R | 117 +- readr-2.0.0/readr/R/read_fwf.R | 163 ++- readr-2.0.0/readr/R/read_lines_chunked.R | 2 readr-2.0.0/readr/R/read_log.R | 11 readr-2.0.0/readr/R/read_table.R | 94 +- readr-2.0.0/readr/R/readr.R | 2 readr-2.0.0/readr/R/source.R | 42 - readr-2.0.0/readr/R/tokenizer.R | 23 readr-2.0.0/readr/R/type_convert.R | 15 readr-2.0.0/readr/R/utils.R | 86 +- readr-2.0.0/readr/R/write.R | 269 +++++- readr-2.0.0/readr/R/zzz.R | 5 readr-2.0.0/readr/README.md | 75 - readr-2.0.0/readr/build/readr.pdf |binary readr-2.0.0/readr/build/vignette.rds |binary readr-2.0.0/readr/inst/WORDLIST | 11 readr-2.0.0/readr/inst/doc/locales.Rmd | 2 readr-2.0.0/readr/inst/doc/locales.html | 538 ++++--------- readr-2.0.0/readr/inst/doc/readr.R | 2 readr-2.0.0/readr/inst/doc/readr.Rmd | 10 readr-2.0.0/readr/inst/doc/readr.html | 574 ++++---------- readr-2.0.0/readr/man/Tokenizers.Rd | 4 readr-2.0.0/readr/man/cols.Rd | 9 readr-2.0.0/readr/man/edition_get.Rd |only readr-2.0.0/readr/man/figures/lifecycle-superseded.svg |only readr-2.0.0/readr/man/format_delim.Rd | 49 - readr-2.0.0/readr/man/melt_delim.Rd | 21 readr-2.0.0/readr/man/melt_delim_chunked.Rd | 12 readr-2.0.0/readr/man/melt_fwf.Rd | 18 readr-2.0.0/readr/man/melt_table.Rd | 14 readr-2.0.0/readr/man/parse_atomic.Rd | 2 readr-2.0.0/readr/man/parse_datetime.Rd | 65 - readr-2.0.0/readr/man/parse_factor.Rd | 2 readr-2.0.0/readr/man/parse_guess.Rd | 6 readr-2.0.0/readr/man/parse_number.Rd | 6 readr-2.0.0/readr/man/parse_vector.Rd | 2 readr-2.0.0/readr/man/problems.Rd | 2 readr-2.0.0/readr/man/read_delim.Rd | 130 ++- readr-2.0.0/readr/man/read_delim_chunked.Rd | 41 - readr-2.0.0/readr/man/read_file.Rd | 2 readr-2.0.0/readr/man/read_fwf.Rd | 83 +- readr-2.0.0/readr/man/read_lines.Rd | 32 readr-2.0.0/readr/man/read_lines_chunked.Rd | 7 readr-2.0.0/readr/man/read_log.Rd | 26 readr-2.0.0/readr/man/read_rds.Rd | 7 readr-2.0.0/readr/man/read_table.Rd | 47 - readr-2.0.0/readr/man/read_table2.Rd |only readr-2.0.0/readr/man/readr-package.Rd | 4 readr-2.0.0/readr/man/readr_threads.Rd |only readr-2.0.0/readr/man/should_show_types.Rd |only readr-2.0.0/readr/man/show_progress.Rd | 2 readr-2.0.0/readr/man/spec_delim.Rd | 118 ++ readr-2.0.0/readr/man/type_convert.Rd | 5 readr-2.0.0/readr/man/with_edition.Rd |only readr-2.0.0/readr/man/write_delim.Rd | 94 +- readr-2.0.0/readr/src/Collector.cpp | 63 - readr-2.0.0/readr/src/Collector.h | 17 readr-2.0.0/readr/src/CollectorGuess.cpp | 78 + readr-2.0.0/readr/src/DateTime.h | 81 - readr-2.0.0/readr/src/DateTimeParser.h | 53 - readr-2.0.0/readr/src/Iconv.cpp | 24 readr-2.0.0/readr/src/LocaleInfo.cpp | 5 readr-2.0.0/readr/src/LocaleInfo.h | 2 readr-2.0.0/readr/src/QiParsers.h | 253 +++++- readr-2.0.0/readr/src/Reader.cpp | 85 +- readr-2.0.0/readr/src/Reader.h | 22 readr-2.0.0/readr/src/Source.cpp | 17 readr-2.0.0/readr/src/Source.h | 13 readr-2.0.0/readr/src/SourceFile.h | 22 readr-2.0.0/readr/src/Token.h | 24 readr-2.0.0/readr/src/Tokenizer.cpp | 27 readr-2.0.0/readr/src/Tokenizer.h | 19 readr-2.0.0/readr/src/TokenizerDelim.cpp | 88 +- readr-2.0.0/readr/src/TokenizerDelim.h | 13 readr-2.0.0/readr/src/TokenizerFwf.cpp | 99 +- readr-2.0.0/readr/src/TokenizerFwf.h | 5 readr-2.0.0/readr/src/TokenizerLog.h | 16 readr-2.0.0/readr/src/TokenizerWs.cpp | 30 readr-2.0.0/readr/src/TokenizerWs.h | 2 readr-2.0.0/readr/src/Warnings.h | 9 readr-2.0.0/readr/src/connection.cpp | 21 readr-2.0.0/readr/src/connection.h | 7 readr-2.0.0/readr/src/cpp11.cpp | 112 +- readr-2.0.0/readr/src/datetime.cpp | 23 readr-2.0.0/readr/src/grisu3.c | 40 readr-2.0.0/readr/src/mio.h |only readr-2.0.0/readr/src/parse.cpp | 48 - readr-2.0.0/readr/src/read.cpp | 95 +- readr-2.0.0/readr/src/type_convert.cpp | 11 readr-2.0.0/readr/src/unicode_fopen.h |only readr-2.0.0/readr/src/utils.h | 37 readr-2.0.0/readr/src/write.cpp | 58 - readr-2.0.0/readr/src/write_delim.cpp | 144 +-- readr-2.0.0/readr/tests/first_edition.R |only readr-2.0.0/readr/tests/second_edition.R |only readr-2.0.0/readr/tests/spelling.R | 3 readr-2.0.0/readr/tests/testthat/_snaps |only readr-2.0.0/readr/tests/testthat/helper.R | 9 readr-2.0.0/readr/tests/testthat/setup.R |only readr-2.0.0/readr/tests/testthat/teardown.R |only readr-2.0.0/readr/tests/testthat/test-col-spec.R | 138 ++- readr-2.0.0/readr/tests/testthat/test-collectors.R | 8 readr-2.0.0/readr/tests/testthat/test-eol.R | 30 readr-2.0.0/readr/tests/testthat/test-melt-chunked.R | 40 readr-2.0.0/readr/tests/testthat/test-melt-csv.R | 390 +++++---- readr-2.0.0/readr/tests/testthat/test-melt-fwf.R | 104 +- readr-2.0.0/readr/tests/testthat/test-melt-table.R | 48 - readr-2.0.0/readr/tests/testthat/test-non-ascii-1152.rds |only readr-2.0.0/readr/tests/testthat/test-parsing-character.R | 102 +- readr-2.0.0/readr/tests/testthat/test-parsing-datetime.R | 74 + readr-2.0.0/readr/tests/testthat/test-parsing-factors.R | 47 - readr-2.0.0/readr/tests/testthat/test-parsing-numeric.R | 10 readr-2.0.0/readr/tests/testthat/test-parsing-time.R | 15 readr-2.0.0/readr/tests/testthat/test-problems.R | 27 readr-2.0.0/readr/tests/testthat/test-read-chunked.R | 17 readr-2.0.0/readr/tests/testthat/test-read-csv.R | 180 ++-- readr-2.0.0/readr/tests/testthat/test-read-file.R | 4 readr-2.0.0/readr/tests/testthat/test-read-fwf.R | 97 +- readr-2.0.0/readr/tests/testthat/test-read-lines.R | 71 - readr-2.0.0/readr/tests/testthat/test-read-table.R | 46 - readr-2.0.0/readr/tests/testthat/test-read_log.R |only readr-2.0.0/readr/tests/testthat/test-tokenizer-delim.R | 14 readr-2.0.0/readr/tests/testthat/test-type-convert.R | 6 readr-2.0.0/readr/tests/testthat/test-write-lines.R | 12 readr-2.0.0/readr/tests/testthat/test-write.R | 74 + readr-2.0.0/readr/tests/testthat/test_list_col_name.csv | 11 readr-2.0.0/readr/vignettes/locales.Rmd | 2 readr-2.0.0/readr/vignettes/readr.Rmd | 10 156 files changed, 4487 insertions(+), 3401 deletions(-)
Title: Extended Dynamic Quantile Linear Models
Description: Routines for Bayesian estimation and analysis of dynamic quantile linear models utilizing the extended asymmetric Laplace error distribution, also known as extended dynamic quantile linear models (exDQLM) described in Barata et al (2020) <https://www.soe.ucsc.edu/research/technical-reports/UCSC-SOE-20-14>.
Author: Raquel Barata [aut, cre],
Raquel Prado [ths],
Bruno Sanso [ths]
Maintainer: Raquel Barata <raquel.a.barata@gmail.com>
Diff between exdqlm versions 0.1.1 dated 2021-06-18 and 0.1.2 dated 2021-07-20
exdqlm-0.1.1/exdqlm/R/monELI.R |only exdqlm-0.1.1/exdqlm/data/monELI.rda |only exdqlm-0.1.1/exdqlm/man/monELI.Rd |only exdqlm-0.1.2/exdqlm/DESCRIPTION | 6 ++-- exdqlm-0.1.2/exdqlm/MD5 | 36 +++++++++++++------------- exdqlm-0.1.2/exdqlm/NEWS.md | 14 ++++++++++ exdqlm-0.1.2/exdqlm/R/compPlot.R | 17 +++++++----- exdqlm-0.1.2/exdqlm/R/exdqlmForecast.R | 23 ++++++++++------ exdqlm-0.1.2/exdqlm/R/exdqlmISVB.R | 5 +++ exdqlm-0.1.2/exdqlm/R/exdqlmMCMC.R | 5 +++ exdqlm-0.1.2/exdqlm/R/exdqlmPlot.R | 13 ++++++--- exdqlm-0.1.2/exdqlm/R/nino34.R |only exdqlm-0.1.2/exdqlm/R/transfn_exdqlmISVB.R | 5 +++ exdqlm-0.1.2/exdqlm/R/utils.R | 12 ++++---- exdqlm-0.1.2/exdqlm/build/partial.rdb |binary exdqlm-0.1.2/exdqlm/data/BTflow.rda |binary exdqlm-0.1.2/exdqlm/data/nino34.rda |only exdqlm-0.1.2/exdqlm/man/compPlot.Rd | 12 +++++++- exdqlm-0.1.2/exdqlm/man/exdqlmForecast.Rd | 5 ++- exdqlm-0.1.2/exdqlm/man/exdqlmPlot.Rd | 4 ++ exdqlm-0.1.2/exdqlm/man/nino34.Rd |only exdqlm-0.1.2/exdqlm/man/transfn_exdqlmISVB.Rd | 1 22 files changed, 109 insertions(+), 49 deletions(-)
Title: Multivariate Adaptive Regression Splines
Description: Build regression models using the techniques in Friedman's
papers "Fast MARS" and "Multivariate Adaptive Regression
Splines" <doi:10.1214/aos/1176347963>.
(The term "MARS" is trademarked and thus not used in
the name of the package.)
Author: Stephen Milborrow. Derived from mda:mars by Trevor Hastie and
Rob Tibshirani. Uses Alan Miller's Fortran utilities
with Thomas Lumley's leaps wrapper.
Maintainer: Stephen Milborrow <milbo@sonic.net>
Diff between earth versions 5.3.0 dated 2020-10-11 and 5.3.1 dated 2021-07-20
DESCRIPTION | 6 MD5 | 94 ++++----- NEWS | 10 - R/lib.R | 2 R/stop.if.dots.R | 9 build/partial.rdb |binary inst/doc/earth-notes.pdf |binary inst/doc/earth-varmod.pdf |binary inst/slowtests/earth.times.bat | 2 inst/slowtests/make.bat | 2 inst/slowtests/test.allowedfunc.bat | 2 inst/slowtests/test.big.bat | 2 inst/slowtests/test.bpairs.bat | 2 inst/slowtests/test.cv.bat | 2 inst/slowtests/test.earthc.gcc.bat | 2 inst/slowtests/test.earthc.msc.bat | 2 inst/slowtests/test.earthc.msc.mak | 2 inst/slowtests/test.earthmain.clang.bat | 7 inst/slowtests/test.earthmain.gcc.bat | 2 inst/slowtests/test.earthmain.gcc64.bat | 10 - inst/slowtests/test.earthmain.msc.bat | 4 inst/slowtests/test.emma.Rout.save | 2 inst/slowtests/test.emma.bat | 2 inst/slowtests/test.expand.bpairs.bat | 2 inst/slowtests/test.full.R | 4 inst/slowtests/test.full.Rout.save | 10 - inst/slowtests/test.full.bat | 2 inst/slowtests/test.glm.R | 78 ++++---- inst/slowtests/test.glm.Rout.save | 284 ++++++++---------------------- inst/slowtests/test.glm.bat | 2 inst/slowtests/test.incorrect.bat | 2 inst/slowtests/test.mem.R | 3 inst/slowtests/test.mem.Rout.save | 13 - inst/slowtests/test.mem.bat | 2 inst/slowtests/test.mods.bat | 4 inst/slowtests/test.multresp.bat | 2 inst/slowtests/test.numstab.R | 2 inst/slowtests/test.numstab.Rout.save | 2 inst/slowtests/test.numstab.bat | 2 inst/slowtests/test.offset.bat | 2 inst/slowtests/test.ordinal.bat | 2 inst/slowtests/test.plotd.bat | 2 inst/slowtests/test.pmethod.cv.bat | 2 inst/slowtests/test.varmod.bat | 2 inst/slowtests/test.varmod.mgcv.Rout.save | 2 inst/slowtests/test.varmod.mgcv.bat | 2 inst/slowtests/test.weights.bat | 2 man/etitanic.Rd | 6 48 files changed, 255 insertions(+), 347 deletions(-)
Title: Create, Survey and Analyse Discrete Choice Experiments
Description: This app is intended to be a complete package for creating, surveying, and analysing discrete choice experiments. Although all these functionalities are available, the app can also be used only to obtain the design of a discrete choice experiment. Reference: Perez-Troncoso, D. (2021) <https://github.com/danielpereztr/DCEtool>.
Author: Daniel Perez Troncoso [aut, cre]
(<https://orcid.org/0000-0003-0091-8148>)
Maintainer: Daniel Perez Troncoso <danielperez@ugr.es>
Diff between DCEtool versions 0.2.3 dated 2021-05-24 and 0.3.1 dated 2021-07-20
DCEtool-0.2.3/DCEtool/R/helpfiles |only DCEtool-0.2.3/DCEtool/inst/doc/DCEtool.R |only DCEtool-0.2.3/DCEtool/inst/doc/DCEtool.Rmd |only DCEtool-0.2.3/DCEtool/inst/doc/DCEtool.html |only DCEtool-0.2.3/DCEtool/vignettes/DCEtool.Rmd |only DCEtool-0.3.1/DCEtool/DESCRIPTION | 12 - DCEtool-0.3.1/DCEtool/MD5 | 28 +- DCEtool-0.3.1/DCEtool/NAMESPACE | 10 DCEtool-0.3.1/DCEtool/NEWS.md | 4 DCEtool-0.3.1/DCEtool/R/app.r | 289 +++++++++++++++++++------- DCEtool-0.3.1/DCEtool/build/partial.rdb |binary DCEtool-0.3.1/DCEtool/build/vignette.rds |binary DCEtool-0.3.1/DCEtool/inst/doc/main.pdf |only DCEtool-0.3.1/DCEtool/inst/doc/main.pdf.asis |only DCEtool-0.3.1/DCEtool/man/DCEtool.Rd | 2 DCEtool-0.3.1/DCEtool/man/www |only DCEtool-0.3.1/DCEtool/vignettes/helpfiles |only DCEtool-0.3.1/DCEtool/vignettes/main.pdf.asis |only 18 files changed, 253 insertions(+), 92 deletions(-)
Title: Evaluation Metrics for Implicit-Feedback Recommender Systems
Description: Calculates evaluation metrics for implicit-feedback recommender systems
that are based on low-rank matrix factorization models, given the fitted model
matrices and data, thus allowing to compare models from a variety of libraries.
Metrics include P@K (precision-at-k, for top-K recommendations), R@K (recall at k),
AP@K (average precision at k), NDCG@K (normalized discounted cumulative gain at k),
Hit@K (from which the 'Hit Rate' is calculated), RR@K (reciprocal rank at k, from
which the 'MRR' or 'mean reciprocal rank' is calculated), ROC-AUC (area under the
receiver-operating characteristic curve), and PR-AUC (area under the
precision-recall curve).
These are calculated on a per-user basis according to the ranking of items induced
by the model, using efficient multi-threaded routines. Also provides functions
for creating train-test splits for model fitting and evaluation.
Author: David Cortes
Maintainer: David Cortes <david.cortes.rivera@gmail.com>
Diff between recometrics versions 0.1.2 dated 2021-07-15 and 0.1.3 dated 2021-07-20
DESCRIPTION | 6 +++--- MD5 | 6 +++--- man/calc.reco.metrics.Rd | 14 ++++++++++++++ src/Makevars | 2 +- 4 files changed, 21 insertions(+), 7 deletions(-)
Title: Functions for Time Series Analysis
Description: Includes nonparametric estimators and tests for time series analysis. The functions are to test for presence of possibly non-monotonic trends and for synchronism of trends in multiple time series, using bootstrap techniques and robust nonparametric difference-based estimators.
Author: Vyacheslav Lyubchich [aut, cre]
(<https://orcid.org/0000-0001-7936-4285>),
Yulia R. Gel [aut],
Calvin Chu [ctb],
Xin Huang [ctb],
Umar Islambekov [ctb],
Palina Niamkova [aut],
Dorcas Ofori-Boateng [ctb],
Ethan D. Schaeffer [ctb],
Srishti Vishwakarma [ctb],
Xingyu Wang [ctb]
Maintainer: Vyacheslav Lyubchich <lyubchich@umces.edu>
Diff between funtimes versions 7.0 dated 2020-11-27 and 8.0 dated 2021-07-20
DESCRIPTION | 23 + MD5 | 69 +++-- NAMESPACE | 15 + R/ARest.R | 16 - R/AuePolyReg_test.R |only R/GombayCPA_test.R |only R/TopoCBN.R |only R/beales.R | 19 - R/ccf_boot.R |only R/cumsumCPA_test.R |only R/funtimes-defunct.R |only R/funtimes.R | 4 R/mcusum.test.R | 115 --------- R/notrend.test.R | 217 ------------------ R/notrend_test.R | 2 R/sync.cluster.R | 211 ----------------- R/sync.test.R | 327 --------------------------- R/wavk.test.R | 257 --------------------- build/partial.rdb |binary build/vignette.rds |binary inst/REFERENCES.bib | 48 +--- inst/doc/beales.R | 3 inst/doc/beales.Rmd | 11 inst/doc/beales.html | 409 +++++++--------------------------- inst/doc/trendtests.R | 6 inst/doc/trendtests.Rmd | 15 - inst/doc/trendtests.html | 523 +++++++++++++------------------------------- man/ARest.Rd | 16 - man/AuePolyReg_test.Rd |only man/GombayCPA_test.Rd |only man/TopoCBN.Rd |only man/beales.Rd | 2 man/ccf_boot.Rd |only man/cumsumCPA_test.Rd |only man/funtimes-defunct.Rd |only man/funtimes-deprecated.Rd | 339 ---------------------------- man/funtimes-package.Rd | 117 +++++---- man/mcusum.test-defunct.Rd |only man/notrend.test-defunct.Rd |only man/sync.cluster-defunct.Rd |only man/sync.test-defunct.Rd |only man/wavk.test-defunct.Rd |only vignettes/beales.Rmd | 11 vignettes/trendtests.Rmd | 15 - 44 files changed, 497 insertions(+), 2293 deletions(-)
Title: Bayesian Global Vector Autoregressions
Description: Estimation of Bayesian Global Vector Autoregressions (BGVAR) with different prior setups and the possibility to introduce stochastic volatility. Built-in priors include the Minnesota, the stochastic search variable selection and Normal-Gamma (NG) prior. For a reference see also Crespo Cuaresma, J., Feldkircher, M. and F. Huber (2016) "Forecasting with Global Vector Autoregressive Models: a Bayesian Approach", Journal of Applied Econometrics, Vol. 31(7), pp. 1371-1391 <doi:10.1002/jae.2504>. Post-processing functions allow for doing predictions, structurally identify the model with short-run or sign-restrictions and compute impulse response functions, historical decompositions and forecast error variance decompositions. Plotting functions are also available.
Author: Maximilian Boeck [aut, cre] (<https://orcid.org/0000-0001-6024-8305>),
Martin Feldkircher [aut] (<https://orcid.org/0000-0002-5511-9215>),
Florian Huber [aut] (<https://orcid.org/0000-0002-2896-7921>),
Darjus Hosszejni [ctb] (<https://orcid.org/0000-0002-3803-691X>)
Maintainer: Maximilian Boeck <maximilian.boeck@wu.ac.at>
Diff between BGVAR versions 2.2.3 dated 2021-07-17 and 2.2.4 dated 2021-07-20
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ inst/doc/examples.R | 2 +- inst/doc/examples.Rmd | 2 +- inst/doc/examples.html | 16 ++++++++-------- src/gvar_stacking.cpp | 2 +- vignettes/examples.Rmd | 2 +- 7 files changed, 21 insertions(+), 21 deletions(-)
Title: Create and (Interactively) Modify Nested Hierarchies
Description: Provides functionality to generate, (interactively) modify (by adding, removing and renaming nodes) and convert nested hierarchies between different formats.
These tree like structures can be used to define for example complex hierarchical tables used for statistical disclosure control.
Author: Bernhard Meindl [aut, cre]
Maintainer: Bernhard Meindl <Bernhard.Meindl@statistik.gv.at>
Diff between sdcHierarchies versions 0.18.3 dated 2020-08-12 and 0.19.0 dated 2021-07-20
DESCRIPTION | 15 - MD5 | 38 +- NAMESPACE | 2 NEWS.md | 5 R/RcppExports.R |only R/hier_add.R | 11 R/hier_compute.R | 18 + R/hier_convert.R | 11 R/hier_create.R | 3 R/hier_grid.R | 22 + R/hier_helpers.R | 194 +++----------- R/hier_import.R | 39 +- R/sdcHierarchies-package.R |only build/vignette.rds |binary inst/app/controllers/observers_common.R | 9 inst/app/global.R | 3 inst/doc/usage.html | 419 +++++++++----------------------- man/hier_grid.Rd | 7 src |only tests/testthat/test_additional.R | 3 tests/testthat/test_hier_grid.R | 17 + 21 files changed, 309 insertions(+), 507 deletions(-)
More information about sdcHierarchies at CRAN
Permanent link
Title: Create Simple Packages Which Do not Upset R Package Checks
Description: Provides a function kitten() which creates cute little
packages which pass R package checks. This sets it apart from
package.skeleton() which it calls, and which leaves imperfect files
behind. As this is not exactly helpful for beginners, kitten() offers
an alternative. Unit test support can be added via the 'tinytest'
package (if present), and documentation-creation support can be
added via 'roxygen2' (if present).
Author: Dirk Eddelbuettel
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between pkgKitten versions 0.2.1 dated 2021-02-22 and 0.2.2 dated 2021-07-20
ChangeLog | 22 ++++++++++++++++++++++ DESCRIPTION | 11 +++++++---- MD5 | 8 ++++---- inst/NEWS.Rd | 7 +++++++ inst/replacements/hello2.R | 1 + 5 files changed, 41 insertions(+), 8 deletions(-)
Title: Perform Inference on Algorithm-Agnostic Variable Importance
Description: Calculate point estimates of and valid confidence intervals for
nonparametric, algorithm-agnostic variable importance measures in high and low dimensions,
using flexible estimators of the underlying regression functions. For more information
about the methods, please see Williamson et al. (Biometrics, 2020), Williamson et al. (arXiv, 2020+) <arXiv:2004.03683>, and Williamson and Feng (ICML, 2020).
Author: Brian D. Williamson [aut, cre]
(<https://orcid.org/0000-0002-7024-548X>),
Jean Feng [ctb],
Noah Simon [ths] (<https://orcid.org/0000-0002-8985-2474>),
Marco Carone [ths] (<https://orcid.org/0000-0003-2106-0953>)
Maintainer: Brian D. Williamson <bwillia2@fredhutch.org>
Diff between vimp versions 2.2.2 dated 2021-06-14 and 2.2.3 dated 2021-07-20
DESCRIPTION | 6 LICENSE | 2 MD5 | 84 ++--- NAMESPACE | 1 NEWS.md | 12 R/cv_vim.R | 358 +++++++++--------------- R/sp_vim.R | 83 +---- R/utils.R | 133 +++++---- R/vim.R | 207 ++++++-------- R/vimp_hypothesis_test.R | 10 R/vimp_se.R | 58 ++- R/zzz.R | 3 inst/doc/introduction-to-vimp.R | 5 inst/doc/introduction-to-vimp.Rmd | 5 inst/doc/introduction-to-vimp.html | 400 ++++++++++----------------- inst/doc/precomputed-regressions.R | 110 +++---- inst/doc/precomputed-regressions.Rmd | 110 +++---- inst/doc/precomputed-regressions.html | 440 ++++++++++++++---------------- inst/doc/types-of-vims.R | 7 inst/doc/types-of-vims.Rmd | 9 inst/doc/types-of-vims.html | 53 +-- man/check_fitted_values.Rd | 4 man/cv_vim.Rd | 20 - man/run_sl.Rd | 12 man/vim.Rd | 14 man/vimp_accuracy.Rd | 6 man/vimp_auc.Rd | 6 man/vimp_deviance.Rd | 6 man/vimp_hypothesis_test.Rd | 7 man/vimp_rsquared.Rd | 6 man/vimp_se.Rd | 26 + tests/testthat/test-average_vim.R | 13 tests/testthat/test-binary_outcomes.R | 92 +++--- tests/testthat/test-bootstrap.R | 6 tests/testthat/test-continuous_outcomes.R | 13 tests/testthat/test-cv_vim.R | 148 ++++++---- tests/testthat/test-ipcw.R | 4 tests/testthat/test-merge_vim.R | 35 +- tests/testthat/test-sp_vim.R | 51 +-- tests/testthat/test-vim.R | 58 ++- vignettes/introduction-to-vimp.Rmd | 5 vignettes/precomputed-regressions.Rmd | 110 +++---- vignettes/types-of-vims.Rmd | 9 43 files changed, 1334 insertions(+), 1413 deletions(-)
Title: A Method to Download Department of Education College Scorecard
Data
Description: A method to download Department of Education College
Scorecard data using the public API
<https://collegescorecard.ed.gov/data/documentation/>. It is based on
the 'dplyr' model of piped commands to select and filter data in a
single chained function call. An API key from the U.S. Department of
Education is required.
Author: Benjamin Skinner [aut, cre] (<https://orcid.org/0000-0002-0337-7415>)
Maintainer: Benjamin Skinner <btskinner@coe.ufl.edu>
Diff between rscorecard versions 0.18.0 dated 2021-01-13 and 0.19.1 dated 2021-07-20
DESCRIPTION | 7 MD5 | 38 ++-- NEWS.md | 19 ++ R/dictionary.R | 60 ++++++- R/distance.R | 79 ++++------ R/filter.R | 96 +++++++----- R/get.R | 297 ++++++++++++++++++++------------------- R/init.R | 3 R/select.R | 114 +++++++------- R/select_year.R | 38 ++-- R/sysdata.rda |binary R/utility_functions.R | 30 +++ man/sc_dict.Rd | 15 + tests/testthat/test-base-pipe.R |only tests/testthat/test-dictionary.R | 6 tests/testthat/test-distance.R | 6 tests/testthat/test-filter.R | 15 + tests/testthat/test-get.R | 6 tests/testthat/test-init.R |only tests/testthat/test-select.R | 11 + tests/testthat/test-year.R | 4 21 files changed, 499 insertions(+), 345 deletions(-)
Title: Bayesian Meta-Analysis and Network Meta-Analysis
Description: Contains functions performing Bayesian inference for meta-analytic and network meta-analytic models through Markov chain Monte Carlo algorithm. Currently, the package implements Hui Yao, Sungduk Kim, Ming-Hui Chen, Joseph G. Ibrahim, Arvind K. Shah, and Jianxin Lin (2015) <doi:10.1080/01621459.2015.1006065> and Hao Li, Daeyoung Lim, Ming-Hui Chen, Joseph G. Ibrahim, Sungduk Kim, Arvind K. Shah, Jianxin Lin (2021) <doi:10.1002/sim.8983>. For maximal computational efficiency, the Markov chain Monte Carlo samplers for each model, written in C++, are fine-tuned. This software has been developed under the auspices of the National Institutes of Health and Merck & Co., Inc., Kenilworth, NJ, USA.
Author: Daeyoung Lim [aut, cre],
Ming-Hui Chen [ctb],
Sungduk Kim [ctb],
Joseph Ibrahim [ctb],
Arvind Shah [ctb],
Jianxin Lin [ctb]
Maintainer: Daeyoung Lim <daeyoung.lim@uconn.edu>
Diff between metapack versions 0.1.2 dated 2021-04-21 and 0.1.3 dated 2021-07-20
metapack-0.1.2/metapack/src/misc.cpp |only metapack-0.1.2/metapack/src/misc.h |only metapack-0.1.2/metapack/src/random.cpp |only metapack-0.1.2/metapack/src/random.h |only metapack-0.1.2/metapack/src/rtmvnCpp.cpp |only metapack-0.1.2/metapack/src/rtmvnCpp.h |only metapack-0.1.3/metapack/DESCRIPTION | 10 metapack-0.1.3/metapack/MD5 | 159 +- metapack-0.1.3/metapack/NAMESPACE | 94 - metapack-0.1.3/metapack/NEWS.md | 4 metapack-0.1.3/metapack/R/BayesNMR.R | 52 metapack-0.1.3/metapack/R/RcppExports.R | 174 +- metapack-0.1.3/metapack/R/bayes.parobs.R | 1116 +++++++------- metapack-0.1.3/metapack/R/coef.R |only metapack-0.1.3/metapack/R/df-TNM.R | 52 metapack-0.1.3/metapack/R/df-cholesterol.R | 60 metapack-0.1.3/metapack/R/fitted.bayes.parobs.R | 439 ++--- metapack-0.1.3/metapack/R/fitted.bayesnmr.R | 1 metapack-0.1.3/metapack/R/hpd.R | 1 metapack-0.1.3/metapack/R/hpd.bayes.parobs.R | 200 +- metapack-0.1.3/metapack/R/hpd.bayesnmr.R | 144 - metapack-0.1.3/metapack/R/meta_analyze.R |only metapack-0.1.3/metapack/R/metapack.R | 34 metapack-0.1.3/metapack/R/model.comp.R | 30 metapack-0.1.3/metapack/R/model.comp.bayes.parobs.R | 156 +- metapack-0.1.3/metapack/R/model.comp.bayesnmr.R | 202 +- metapack-0.1.3/metapack/R/plot.bayes.parobs.R | 114 - metapack-0.1.3/metapack/R/plot.bayesnmr.R | 112 - metapack-0.1.3/metapack/R/plot.sucra.R | 60 metapack-0.1.3/metapack/R/print.bayes.parobs.R | 193 +- metapack-0.1.3/metapack/R/print.bayesnmr.R | 24 metapack-0.1.3/metapack/R/sucra.R | 12 metapack-0.1.3/metapack/R/sucra.bayesnmr.R | 66 metapack-0.1.3/metapack/R/summary.bayes.parobs.R | 108 - metapack-0.1.3/metapack/R/summary.bayesnmr.R | 4 metapack-0.1.3/metapack/R/util.R | 196 +- metapack-0.1.3/metapack/R/zzz.R | 17 metapack-0.1.3/metapack/README.md | 8 metapack-0.1.3/metapack/build/vignette.rds |binary metapack-0.1.3/metapack/data/TNM.rda |binary metapack-0.1.3/metapack/data/cholesterol.rda |binary metapack-0.1.3/metapack/inst/bib/metapack.bib | 13 metapack-0.1.3/metapack/inst/doc/intro-to-metapack.R | 43 metapack-0.1.3/metapack/inst/doc/intro-to-metapack.Rmd | 246 +-- metapack-0.1.3/metapack/inst/doc/intro-to-metapack.html | 1247 +++++++--------- metapack-0.1.3/metapack/man/TNM.Rd | 72 metapack-0.1.3/metapack/man/bayes.nmr.Rd | 247 +-- metapack-0.1.3/metapack/man/bayes.parobs.Rd | 265 +-- metapack-0.1.3/metapack/man/bmeta_analyze.Rd |only metapack-0.1.3/metapack/man/cholesterol.Rd | 80 - metapack-0.1.3/metapack/man/coef.bsynthesis.Rd |only metapack-0.1.3/metapack/man/fitted.bayes.parobs.Rd | 46 metapack-0.1.3/metapack/man/fitted.bayesnmr.Rd | 46 metapack-0.1.3/metapack/man/hpd.Rd | 58 metapack-0.1.3/metapack/man/hpd.bayes.parobs.Rd | 46 metapack-0.1.3/metapack/man/hpd.bayesnmr.Rd | 46 metapack-0.1.3/metapack/man/metapack.Rd | 44 metapack-0.1.3/metapack/man/model.comp.Rd | 46 metapack-0.1.3/metapack/man/model.comp.bayes.parobs.Rd | 46 metapack-0.1.3/metapack/man/model.comp.bayesnmr.Rd | 46 metapack-0.1.3/metapack/man/ns.Rd |only metapack-0.1.3/metapack/man/plot.bayes.parobs.Rd | 38 metapack-0.1.3/metapack/man/plot.bayesnmr.Rd | 38 metapack-0.1.3/metapack/man/plot.sucra.Rd | 42 metapack-0.1.3/metapack/man/print.bayes.parobs.Rd | 46 metapack-0.1.3/metapack/man/print.bayesnmr.Rd | 46 metapack-0.1.3/metapack/man/sucra.Rd | 34 metapack-0.1.3/metapack/man/sucra.bayesnmr.Rd | 34 metapack-0.1.3/metapack/man/summary.bayes.parobs.Rd | 38 metapack-0.1.3/metapack/man/summary.bayesnmr.Rd | 38 metapack-0.1.3/metapack/src/BayesNMR.cpp | 5 metapack-0.1.3/metapack/src/fmodel1.cpp | 6 metapack-0.1.3/metapack/src/fmodel1p.cpp | 10 metapack-0.1.3/metapack/src/fmodel2.cpp | 10 metapack-0.1.3/metapack/src/fmodel2p.cpp | 14 metapack-0.1.3/metapack/src/fmodel2p5.cpp | 10 metapack-0.1.3/metapack/src/fmodel2p5p.cpp | 14 metapack-0.1.3/metapack/src/fmodel3.cpp | 6 metapack-0.1.3/metapack/src/fmodel3pp.cpp | 10 metapack-0.1.3/metapack/src/fmodel4.cpp | 10 metapack-0.1.3/metapack/src/fmodel4p.cpp | 14 metapack-0.1.3/metapack/src/linearalgebra.cpp | 88 - metapack-0.1.3/metapack/src/linearalgebra.h | 20 metapack-0.1.3/metapack/src/loglik_POCov.cpp | 179 -- metapack-0.1.3/metapack/src/loglik_POCov.h | 49 metapack-0.1.3/metapack/vignettes/intro-to-metapack.Rmd | 246 +-- 86 files changed, 3587 insertions(+), 3937 deletions(-)
Title: Model for Semisupervised Text Analysis Based on Word Embeddings
Description: A word embeddings-based semisupervised model for document scaling Watanabe (2020) <doi:10.1080/19312458.2020.1832976>.
LSS allows users to analyze large and complex corpora on arbitrary dimensions with seed words exploiting efficiency of word embeddings (SVD, Glove).
It can generate word vectors on a users-provided corpus or incorporate a pre-trained word vectors.
Author: Kohei Watanabe [aut, cre, cph]
Maintainer: Kohei Watanabe <watanabe.kohei@gmail.com>
Diff between LSX versions 0.9.9 dated 2021-04-19 and 1.0.0 dated 2021-07-20
DESCRIPTION | 8 ++++---- MD5 | 30 +++++++++++++++--------------- NEWS.md | 7 +++++++ R/textmodel.R | 37 ++++++++++++++++++++----------------- R/textplot.R | 14 +++++++++----- R/utils.R | 30 ++++++++++++++---------------- build/partial.rdb |binary man/as.seedwords.Rd | 4 +++- man/predict.textmodel_lss.Rd | 1 - man/textmodel_lss.Rd | 13 +++++++++---- man/textplot_terms.Rd | 9 ++++++--- tests/testthat/test-as.textmodel.R | 1 - tests/testthat/test-textmodel.R | 30 ++++++++++++++++++++++++++++-- tests/testthat/test-textplot.R | 27 +++++++++++++++++++++++++-- tests/testthat/test-textstat.R | 1 - tests/testthat/test-utils.R | 18 +++++++++++++----- 16 files changed, 153 insertions(+), 77 deletions(-)
Title: Loglikelihood Adjustment for Extreme Value Models
Description: Performs adjusted inferences based on model objects fitted, using
maximum likelihood estimation, by the extreme value analysis packages
'eva' <https://cran.r-project.org/package=eva>,
'evd' <https://cran.r-project.org/package=evd>,
'evir' <https://cran.r-project.org/package=evir>,
'extRemes' <https://cran.r-project.org/package=extRemes>,
'fExtremes' <https://cran.r-project.org/package=fExtremes>,
'ismev' <https://cran.r-project.org/package=ismev>,
'mev' <https://cran.r-project.org/package=mev>,
'POT' <https://cran.r-project.org/package=POT> and
'texmex' <https://cran.r-project.org/package=texmex>.
Adjusted standard errors and an adjusted loglikelihood are provided, using
the 'chandwich' package <https://cran.r-project.org/package=chandwich>
and the object-oriented features of the 'sandwich' package
<https://cran.r-project.org/package=sandwich>. The adjustment is based on a
robust sandwich estimator of the parameter covariance matrix, based on the
methodology in Chandler and Bate (2007) <doi:10.1093/biomet/asm015>. This
can be used for cluster correlated data when interest lies in the
parameters of the marginal distributions, or for performing inferences that
are robust to certain types of model misspecification. Univariate extreme
value models, including regression models, are supported.
Author: Paul J. Northrop [aut, cre, cph],
Camellia Yin [aut, cph]
Maintainer: Paul J. Northrop <p.northrop@ucl.ac.uk>
Diff between lax versions 1.1.0 dated 2019-12-05 and 1.2.0 dated 2021-07-20
DESCRIPTION | 19 - MD5 | 102 +++--- NAMESPACE | 16 - NEWS.md | 18 + R/alogLik_methods.R | 16 - R/anova.R | 19 - R/estfun.R | 16 + R/eva.R |only R/eva_gevr.R |only R/eva_gpd.R |only R/fExtremes.R | 8 R/lax.R | 40 +- R/mev.R | 3 R/return_level.R | 5 README.md | 59 +++ build/partial.rdb |only build/vignette.rds |binary inst/doc/lax-vignette.R | 15 inst/doc/lax-vignette.Rmd | 25 + inst/doc/lax-vignette.html | 477 ++++++++++++++++++------------- man/POT.Rd | 6 man/alogLik.Rd | 16 - man/anova.lax.Rd | 13 man/eva.Rd |only man/evd.Rd | 6 man/evir.Rd | 6 man/extRemes.Rd | 6 man/fExtremes.Rd | 14 man/ismev.Rd | 6 man/lax.Rd | 42 +- man/logLik.logLikVec.Rd | 32 +- man/logLikVec.Rd | 32 +- man/mev.Rd | 9 man/ow.Rd | 8 man/plot.retlev.Rd | 3 man/return_level.Rd | 2 man/texmex.Rd | 6 tests/testthat/test-alogLik-default.R | 2 tests/testthat/test-anova.R | 2 tests/testthat/test-bc-deriv.R | 2 tests/testthat/test-ismev-gev-vs-rlarg.R | 2 tests/testthat/test-logLik-POT.R | 2 tests/testthat/test-logLik-eva.R |only tests/testthat/test-logLik-evd.R | 2 tests/testthat/test-logLik-evir.R | 2 tests/testthat/test-logLik-extRemes.R | 2 tests/testthat/test-logLik-fExtremes.R | 2 tests/testthat/test-logLik-ismev.R | 2 tests/testthat/test-logLik-mev.R | 15 tests/testthat/test-logLik-texmex.R | 2 tests/testthat/test-nobs.R | 5 tests/testthat/test-return-level.R | 2 tests/testthat/test-vcov.R | 10 vignettes/lax-vignette.Rmd | 25 + vignettes/lax.bib | 14 55 files changed, 673 insertions(+), 465 deletions(-)
Title: Bayesian Screening and Variable Selection
Description: Performs Bayesian variable selection with embedded screening for ultra-high dimensional Gaussian linear regression models. The methodology is described in Li, Dutta and Roy (2020) <arXiv:2006.07561>.
Author: Dongjin Li [aut, cre], Somak Dutta [aut], Vivekananda Roy [ctb]
Maintainer: Dongjin Li <dongjl@iastate.edu>
Diff between bravo versions 1.0.5 dated 2021-06-23 and 2.0.0 dated 2021-07-20
bravo-1.0.5/bravo/R/bis.r |only bravo-1.0.5/bravo/man/bis.Rd |only bravo-2.0.0/bravo/DESCRIPTION | 6 +++--- bravo-2.0.0/bravo/MD5 | 8 ++++---- bravo-2.0.0/bravo/NAMESPACE | 2 +- bravo-2.0.0/bravo/R/bits.r |only bravo-2.0.0/bravo/man/bits.Rd |only 7 files changed, 8 insertions(+), 8 deletions(-)