Thu, 22 Jul 2021

Package Rchoice updated to version 0.3-3 with previous version 0.3-2 dated 2020-05-27

Title: Discrete Choice (Binary, Poisson and Ordered) Models with Random Parameters
Description: An implementation of simulated maximum likelihood method for the estimation of Binary (Probit and Logit), Ordered (Probit and Logit) and Poisson models with random parameters for cross-sectional and longitudinal data as presented in Sarrias (2016) <doi:10.18637/jss.v074.i10>.
Author: Mauricio Sarrias [aut, cre] (<https://orcid.org/0000-0001-5932-4817>)
Maintainer: Mauricio Sarrias <msarrias86@gmail.com>

Diff between Rchoice versions 0.3-2 dated 2020-05-27 and 0.3-3 dated 2021-07-22

 DESCRIPTION                      |   29 ++++++++++++------------
 MD5                              |   40 ++++++++++++++++++++-------------
 NAMESPACE                        |   47 +++++++++++++++++++++++++++++++++++++--
 R/Rchoice.R                      |   15 ------------
 R/Rchoice.methods.R              |   19 +++++++--------
 R/Rchoice.modelform.R            |    9 ++++---
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 man/vcov.Rchoice.Rd              |    4 +--
 26 files changed, 188 insertions(+), 107 deletions(-)

More information about Rchoice at CRAN
Permanent link

Package Lock5Data updated to version 3.0.0 with previous version 2.8 dated 2017-07-01

Title: Datasets for "Statistics: UnLocking the Power of Data"
Description: Datasets for the third edition of "Statistics: Unlocking the Power of Data" by Lock^5 Includes version of datasets from earlier editions.
Author: Robin Lock [aut, cre]
Maintainer: Robin Lock <rlock@stlawu.edu>

Diff between Lock5Data versions 2.8 dated 2017-07-01 and 3.0.0 dated 2021-07-22

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Package geobr updated to version 1.6.4 with previous version 1.6.3 dated 2021-07-21

Title: Download Official Spatial Data Sets of Brazil
Description: Easy access to official spatial data sets of Brazil as 'sf' objects in R. The package includes a wide range of geospatial data available at various geographic scales and for various years with harmonized attributes, projection and fixed topology.
Author: Rafael H. M. Pereira [aut, cre] (<https://orcid.org/0000-0003-2125-7465>), Caio Nogueira Goncalves [aut], Paulo Henrique Fernandes de Araujo [ctb], Guilherme Duarte Carvalho [ctb], Rodrigo Almeida de Arruda [ctb], Igor Nascimento [ctb], Barbara Santiago Pedreira da Costa [ctb], Welligtton Silva Cavedo [ctb], Pedro R. Andrade [ctb], Alan da Silva [ctb], Carlos Kauê Vieira Braga [ctb], Carl Schmertmann [ctb], Alessandro Samuel-Rosa [ctb], Daniel Ferreira [ctb], Ipea - Institue for Applied Economic Research [cph, fnd]
Maintainer: Rafael H. M. Pereira <rafa.pereira.br@gmail.com>

Diff between geobr versions 1.6.3 dated 2021-07-21 and 1.6.4 dated 2021-07-22

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More information about geobr at CRAN
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Package rstudio.prefs updated to version 0.1.5 with previous version 0.1.4 dated 2021-07-12

Title: Set 'RStudio' Preferences
Description: As of 'RStudio' v1.3, the preferences in the Global Options dialog (and a number of other preferences that aren’t) are now saved in simple, plain-text JSON files. This package provides an interface for working with these 'RStudio' JSON preference files to easily make modifications without using the point-and-click option menus. This is particularly helpful when working on teams to ensure a unified experience across machines and utilizing settings for best practices.
Author: Daniel D. Sjoberg [aut, cre, cph] (<https://orcid.org/0000-0003-0862-2018>)
Maintainer: Daniel D. Sjoberg <danield.sjoberg@gmail.com>

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Permanent link

Package clock updated to version 0.4.0 with previous version 0.3.1 dated 2021-06-28

Title: Date-Time Types and Tools
Description: Provides a comprehensive library for date-time manipulations using a new family of orthogonal date-time classes (durations, time points, zoned-times, and calendars) that partition responsibilities so that the complexities of time zones are only considered when they are really needed. Capabilities include: date-time parsing, formatting, arithmetic, extraction and updating of components, and rounding.
Author: Davis Vaughan [aut, cre], RStudio [cph, fnd]
Maintainer: Davis Vaughan <davis@rstudio.com>

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More information about clock at CRAN
Permanent link

Package starter updated to version 0.1.5 with previous version 0.1.4 dated 2021-07-13

Title: Starter Kit for New Projects
Description: Get started with new projects by dropping a skeleton of a new project into a new or existing directory, initialise git repositories, and create reproducible environments with the 'renv' package. The package allows for dynamically named files, folders, file content, as well as the functionality to drop individual template files into existing projects.
Author: Daniel D. Sjoberg [aut, cre] (<https://orcid.org/0000-0003-0862-2018>)
Maintainer: Daniel D. Sjoberg <danield.sjoberg@gmail.com>

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Permanent link

Package mapping updated to version 1.3 with previous version 1.2.1 dated 2021-06-24

Title: Automatic Download, Linking, Manipulating Coordinates for Maps
Description: Maps are an important tool to visualise variables distribution across different spatial object. The mapping process require to link the data with coordinates and then generate the correspondent map. This package provide coordinates, linking and mapping functions for an automatic, flexible and easy approach of mapping workflow of different geographical statistical unit.Geographical coordinates are provided in the package and automatically linked with the input data to generate maps with internal provided functions or external functions.provide an easy, flexible and automatic approach to potentially download updated coordinates, to link statistical units with coordinates and to aggregate variables based on the spatial hierarchy of units. The object returned from the package can be used for thematic maps with the build-in functions provided in mapping or with other packages already available.
Author: Alessio Serafini [aut, cre], Giancarlo Ferrara [aut]
Maintainer: Alessio Serafini <srf.alessio@gmail.com>

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More information about mapping at CRAN
Permanent link

Package PAFit updated to version 1.1.0.4 with previous version 1.1.0.2 dated 2021-05-17

Title: Generative Mechanism Estimation in Temporal Complex Networks
Description: Statistical methods for estimating preferential attachment and node fitness generative mechanisms in temporal complex networks are provided. Thong Pham et al. (2015) <doi:10.1371/journal.pone.0137796>. Thong Pham et al. (2016) <doi:10.1038/srep32558>. Thong Pham et al. (2020) <doi:10.18637/jss.v092.i03>.
Author: Thong Pham, Paul Sheridan, Hidetoshi Shimodaira
Maintainer: Thong Pham <thongphamthe@gmail.com>

Diff between PAFit versions 1.1.0.2 dated 2021-05-17 and 1.1.0.4 dated 2021-07-22

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Permanent link

Package shinyMobile updated to version 0.9.0 with previous version 0.8.0 dated 2021-01-11

Title: Mobile Ready 'shiny' Apps with Standalone Capabilities
Description: Develop outstanding 'shiny' apps for 'iOS', 'Android', desktop as well as beautiful 'shiny' gadgets. 'shinyMobile' is built on top of the latest 'Framework7' template <https://framework7.io>. Discover 14 new input widgets (sliders, vertical sliders, stepper, grouped action buttons, toggles, picker, smart select, ...), 2 themes (light and dark), 12 new widgets (expandable cards, badges, chips, timelines, gauges, progress bars, ...) combined with the power of server-side notifications such as alerts, modals, toasts, action sheets, sheets (and more) as well as 3 layouts (single, tabs and split).
Author: David Granjon [aut, cre], Victor Perrier [aut], John Coene [ctb], Isabelle Rudolf [aut], Dieter Menne [ctb], Marvelapp [ctb, cph] (device.css wrappers), Vladimir Kharlampidi [ctb, cph] (Framework7 HTML template)
Maintainer: David Granjon <dgranjon@ymail.com>

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 shinyMobile-0.9.0/shinyMobile/R/f7ActionSheet.R                                                          |    4 
 shinyMobile-0.9.0/shinyMobile/R/f7Appbar.R                                                               |    4 
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 shinyMobile-0.9.0/shinyMobile/R/f7Button.R                                                               |    8 
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 shinyMobile-0.9.0/shinyMobile/man/f7Slide.Rd                                                             |    2 
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 shinyMobile-0.9.0/shinyMobile/man/f7Tabs.Rd                                                              |    4 
 shinyMobile-0.9.0/shinyMobile/man/f7TapHold.Rd                                                           |    2 
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 shinyMobile-0.9.0/shinyMobile/man/fab.Rd                                                                 |    4 
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 shinyMobile-0.9.0/shinyMobile/man/stepper.Rd                                                             |    4 
 shinyMobile-0.9.0/shinyMobile/man/swipeout.Rd                                                            |    4 
 shinyMobile-0.9.0/shinyMobile/man/swiper.Rd                                                              |    2 
 shinyMobile-0.9.0/shinyMobile/man/text.Rd                                                                |    4 
 shinyMobile-0.9.0/shinyMobile/man/textarea.Rd                                                            |    4 
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 shinyMobile-0.9.0/shinyMobile/man/toggle.Rd                                                              |    4 
 shinyMobile-0.9.0/shinyMobile/man/tooltip.Rd                                                             |    6 
 shinyMobile-0.9.0/shinyMobile/man/updateF7App.Rd                                                         |    2 
 shinyMobile-0.9.0/shinyMobile/man/updateF7Entity.Rd                                                      |    2 
 shinyMobile-0.9.0/shinyMobile/man/updateF7Tabs.Rd                                                        |    2 
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More information about shinyMobile at CRAN
Permanent link

Package NPCirc updated to version 3.0.1 with previous version 2.0.1 dated 2014-10-16

Title: Nonparametric Circular Methods
Description: Nonparametric smoothing methods for density and regression estimation involving circular data, including methods described in Oliveira et al. (2014) and proposals in Alonso-Pena et al. (2021).
Author: Mar<ed>a Oliveira [aut, cre], Mar<ed>a Alonso-Pena [aut, cre], Jose Ameijeiras-Alonso [aut], Rosa M. Crujeiras [aut], Alberto Rodr<ed>guez-Casal [aut]
Maintainer: Mar<ed>a Alonso-Pena <mariaalonso.pena@usc.es>

Diff between NPCirc versions 2.0.1 dated 2014-10-16 and 3.0.1 dated 2021-07-22

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More information about NPCirc at CRAN
Permanent link

Package GWSDAT updated to version 3.1.0 with previous version 3.0.6 dated 2021-02-19

Title: GroundWater Spatiotemporal Data Analysis Tool (GWSDAT)
Description: Shiny application for the analysis of groundwater monitoring data, designed to work with simple time-series data for solute concentration and ground water elevation, but can also plot non-aqueous phase liquid (NAPL) thickness if required. Also provides the import of a site basemap in GIS shapefile format.
Author: Wayne Jones <wayne.w.jones@shell.com>, Ludger Evers <ludger.evers@glasgow.ac.uk>, Andrej Aderhold <andrej.aderhold@protonmail.com>
Maintainer: Wayne Jones <wayne.w.jones@shell.com>

Diff between GWSDAT versions 3.0.6 dated 2021-02-19 and 3.1.0 dated 2021-07-22

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More information about GWSDAT at CRAN
Permanent link

Package workflowsets updated to version 0.1.0 with previous version 0.0.2 dated 2021-04-16

Title: Create a Collection of 'tidymodels' Workflows
Description: A workflow is a combination of a model and preprocessors (e.g, a formula, recipe, etc.) (Kuhn and Silge (2021) <https://www.tmwr.org/>). In order to try different combinations of these, an object can be created that contains many workflows. There are functions to create workflows en masse as well as training them and visualizing the results.
Author: Max Kuhn [aut, cre] (<https://orcid.org/0000-0003-2402-136X>), RStudio [cph]
Maintainer: Max Kuhn <max@rstudio.com>

Diff between workflowsets versions 0.0.2 dated 2021-04-16 and 0.1.0 dated 2021-07-22

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More information about workflowsets at CRAN
Permanent link

Package sdcLog updated to version 0.3.0 with previous version 0.2.0 dated 2021-02-16

Title: Tools for Statistical Disclosure Control in Research Data Centers
Description: Tools for researchers to explicitly show that their results comply to rules for statistical disclosure control imposed by research data centers. These tools help in checking descriptive statistics and models and in calculating extreme values that are not individual data. Also included is a simple function to create log files. The methods used here are described in the "Guidelines for the checking of output based on microdata research" by Bond, Brandt, and de Wolf (2015) <https://ec.europa.eu/eurostat/cros/system/files/dwb_standalone-document_output-checking-guidelines.pdf>.
Author: Matthias Gomolka [aut, cre], Tim Becker [aut], Pantelis Karapanagiotis [ctb]
Maintainer: Matthias Gomolka <matthias.gomolka@posteo.de>

Diff between sdcLog versions 0.2.0 dated 2021-02-16 and 0.3.0 dated 2021-07-22

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Package rasterVis updated to version 0.50.3 with previous version 0.50.2 dated 2021-05-01

Title: Visualization Methods for Raster Data
Description: Methods for enhanced visualization and interaction with raster data. It implements visualization methods for quantitative data and categorical data, both for univariate and multivariate rasters. It also provides methods to display spatiotemporal rasters, and vector fields. See the website for examples.
Author: Oscar Perpinan Lamigueiro [cre, aut] (<https://orcid.org/0000-0002-4134-7196>), Robert Hijmans [aut]
Maintainer: Oscar Perpinan Lamigueiro <oscar.perpinan@upm.es>

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Package ichimoku updated to version 0.3.0 with previous version 0.2.0 dated 2021-06-17

Title: Visualization and Tools for Ichimoku Kinko Hyo Strategies
Description: An implementation of 'Ichimoku Kinko Hyo', also commonly known as 'cloud charts'. Static and interactive visualizations with tools for creating, backtesting and development of quantitative 'ichimoku' strategies. As described in Sasaki (1996, ISBN:4925152009), the technique is a refinement on candlestick charting originating from Japan, now in widespread use in technical analysis worldwide. Translating as 'one-glance equilibrium chart', it allows the price action and market structure of financial securities to be determined 'at-a-glance'. Incorporates an interface with the OANDA fxTrade API <https://developer.oanda.com/> for retrieving historical and live streaming price data for major currencies, metals, commodities, government bonds and stock indices.
Author: Charlie Gao [aut, cre]
Maintainer: Charlie Gao <charlie.gao@shikokuchuo.net>

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Package finbif updated to version 0.6.0 with previous version 0.5.0 dated 2021-03-26

Title: Interface for the 'Finnish Biodiversity Information Facility' API
Description: A programmatic interface to the 'Finnish Biodiversity Information Facility' ('FinBIF') API (<https://api.laji.fi>). 'FinBIF' aggregates Finnish biodiversity data from multiple sources in a single open access portal for researchers, citizen scientists, industry and government. 'FinBIF' allows users of biodiversity information to find, access, combine and visualise data on Finnish plants, animals and microorganisms. The 'finbif' package makes the publicly available data in 'FinBIF' easily accessible to programmers. Biodiversity information is available on taxonomy and taxon occurrence. Occurrence data can be filtered by taxon, time, location and other variables. The data accessed are conveniently preformatted for subsequent analyses.
Author: Finnish Museum of Natural History - Luomus [cph], William K. Morris [aut, cre] (<https://orcid.org/0000-0002-8686-4154>)
Maintainer: William K. Morris <willi@mmorris.email>

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Package VIM updated to version 6.1.1 with previous version 6.1.0 dated 2021-01-19

Title: Visualization and Imputation of Missing Values
Description: New tools for the visualization of missing and/or imputed values are introduced, which can be used for exploring the data and the structure of the missing and/or imputed values. Depending on this structure of the missing values, the corresponding methods may help to identify the mechanism generating the missing values and allows to explore the data including missing values. In addition, the quality of imputation can be visually explored using various univariate, bivariate, multiple and multivariate plot methods. A graphical user interface available in the separate package VIMGUI allows an easy handling of the implemented plot methods.
Author: Matthias Templ [aut, cre], Alexander Kowarik [aut] (<https://orcid.org/0000-0001-8598-4130>), Andreas Alfons [aut], Gregor de Cillia [aut], Bernd Prantner [ctb], Wolfgang Rannetbauer [aut]
Maintainer: Matthias Templ <matthias.templ@gmail.com>

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Package hutils updated to version 1.7.1 with previous version 1.6.0 dated 2020-11-16

Title: Miscellaneous R Functions and Aliases
Description: Provides utility functions for, and drawing on, the 'data.table' package. The package also collates useful miscellaneous functions extending base R not available elsewhere. The name is a portmanteau of 'utils' and the author.
Author: Hugh Parsonage [aut, cre], Michael Frasco [ctb], Ben Hamner [ctb]
Maintainer: Hugh Parsonage <hugh.parsonage@gmail.com>

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Package rock updated to version 0.4.3 with previous version 0.4.1 dated 2021-07-14

Title: Reproducible Open Coding Kit
Description: The Reproducible Open Coding Kit ('ROCK', and this package, 'rock') was developed to facilitate reproducible and open coding, specifically geared towards qualitative research methods. Although it is a general-purpose toolkit, three specific applications have been implemented, specifically an interface to the 'rENA' package that implements Epistemic Network Analysis ('ENA'), means to process notes from Cognitive Interviews ('CIs'), and means to work with decentralized construct taxonomies ('DCTs').
Author: Gjalt-Jorn Ygram Peters [aut, cre] (<https://orcid.org/0000-0002-0336-9589>), Szilvia Zorgo [ctb] (<https://orcid.org/0000-0002-6916-2097>)
Maintainer: Gjalt-Jorn Ygram Peters <gjalt-jorn@behaviorchange.eu>

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Package pguIMP updated to version 0.0.0.2 with previous version 0.0.0.1 dated 2021-07-01

Title: 'pguIMP'
Description: Reproducible cleaning of bio-medical laboratory data using methods of visualization,error correction and transformation implemented as interactive R-notebooks.
Author: Sebastian Malkusch [aut, cre] (<https://orcid.org/0000-0001-6766-140X>), Joern Loetsch [aut] (<https://orcid.org/0000-0002-5818-6958>)
Maintainer: Sebastian Malkusch <malkusch@med.uni-frankfurt.de>

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Package lightr updated to version 1.6.0 with previous version 1.5.0 dated 2021-06-19

Title: Read Spectrometric Data and Metadata
Description: Parse various reflectance/transmittance/absorbance spectra file formats to extract spectral data and metadata, as described in Gruson, White & Maia (2019) <doi:10.21105/joss.01857>. Among other formats, it can import files from 'Avantes' <https://www.avantes.com/>, 'CRAIC' <https://www.microspectra.com/>, and 'OceanInsight' (formerly 'OceanOptics') <https://www.oceaninsight.com/> brands.
Author: Hugo Gruson [cre, aut, cph] (<https://orcid.org/0000-0002-4094-1476>), Rafael Maia [aut, cph] (<https://orcid.org/0000-0002-7563-9795>), Thomas White [aut, cph] (<https://orcid.org/0000-0002-3976-1734>), Kotya Karapetyan [ctb, cph] (Author of the MATLAB script to read AvaSoft7 binary files (CC-BY))
Maintainer: Hugo Gruson <hugo.gruson+R@normalesup.org>

Diff between lightr versions 1.5.0 dated 2021-06-19 and 1.6.0 dated 2021-07-22

 DESCRIPTION                       |    6 +--
 MD5                               |   52 +++++++++++++++----------------
 NEWS.md                           |   18 ++++++++++
 R/get_metadata.R                  |    5 +--
 R/parse_avantes_binary.R          |    3 +
 R/parse_avantes_converted.R       |    2 -
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 R/parse_procspec.R                |    3 +
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 tests/testthat/test_dispatch.R    |    2 -
 tests/testthat/test_parsers.R     |   32 ++++++++++++-------
 27 files changed, 217 insertions(+), 98 deletions(-)

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New package frscore with initial version 0.1.0
Package: frscore
Title: Functions for Calculating Fit-Robustness of CNA-Solutions
Version: 0.1.0
Description: Functions for automatically performing a reanalysis series on a data set using CNA, and for calculating the fit-robustness of the resulting models, as described in Parkkinen and Baumgartner (2021) <doi:10.1177/0049124120986200>.
License: AGPL (>= 3)
Encoding: UTF-8
LazyData: true
Imports: dplyr, Rfast, magrittr, rlang
Depends: R (>= 3.5), cna (>= 3.2.0)
Suggests: spelling, testthat (>= 3.0.0)
Language: en-US
NeedsCompilation: no
Packaged: 2021-07-22 05:29:37 UTC; lbl
Author: Veli-Pekka Parkkinen [aut, cre, cph], Michael Baumgartner [aut, cph], Mathias Ambuehl [ctb]
Maintainer: Veli-Pekka Parkkinen <parkkinenv@gmail.com>
Repository: CRAN
Date/Publication: 2021-07-22 10:10:02 UTC

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Package flextable updated to version 0.6.7 with previous version 0.6.6 dated 2021-05-17

Title: Functions for Tabular Reporting
Description: Create pretty tables for 'HTML', 'PDF', 'Microsoft Word' and 'Microsoft PowerPoint' documents from 'R Markdown'. Functions are provided to let users create tables, modify and format their content. It also extends package 'officer' that does not contain any feature for customized tabular reporting.
Author: David Gohel [aut, cre], Clementine Jager [ctb], Quentin Fazilleau [ctb], Maxim Nazarov [ctb] (rmarkdown for docx output), Titouan Robert [ctb], Michael Barrowman [ctb] (inline footnotes), Atsushi Yasumoto [ctb] (support for bookdown cross reference), Paul Julian [ctb] (support for gam objects)
Maintainer: David Gohel <david.gohel@ardata.fr>

Diff between flextable versions 0.6.6 dated 2021-05-17 and 0.6.7 dated 2021-07-22

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 MD5                             |   41 +++++++++---------
 NAMESPACE                       |    3 +
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 22 files changed, 255 insertions(+), 152 deletions(-)

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New package dowser with initial version 0.1.0
Package: dowser
Version: 0.1.0
Date: 2021-07-13
Title: B Cell Receptor Phylogenetics Toolkit
Description: Provides a set of functions for inferring, visualizing, and analyzing B cell phylogenetic trees. Provides methods to 1) reconstruct unmutated ancestral sequences, 2) build B cell phylogenetic trees using multiple methods, 3) visualize trees with metadata at the tips, 4) reconstruct intermediate sequences, 5) detect biased ancestor-descendant relationships among metadata types Workflow examples available at documentation site (see URL). Citations: Hoehn et al (2020) <doi:10.1101/2020.05.30.124446>, Hoehn et al (2021) <doi:10.1101/2021.01.06.425648>.
License: AGPL-3
URL: https://dowser.readthedocs.io
BugReports: https://bitbucket.org/kleinstein/dowser/issues
LazyData: true
BuildVignettes: true
VignetteBuilder: knitr
Encoding: UTF-8
biocViews:
Depends: R (>= 3.1.2), ggplot2 (>= 3.2.0)
Imports: alakazam (>= 1.1.0), ape (>= 5.5), Biostrings, dplyr (>= 0.8.1), ggtree, graphics, gridExtra, markdown, methods, phangorn (>= 2.7.1), phylotate, RColorBrewer, rlang, shazam (>= 1.1.0), stats, stringr, tidyselect, tidyr, utils
Suggests: knitr, rmarkdown, testthat
Collate: 'Data.R' 'Dowser.R' 'Clones.R' 'Classes.R' 'Plotting.R' 'Germlines.R' 'Statistics.R' 'TreeFunctions.R'
NeedsCompilation: no
Packaged: 2021-07-21 12:19:25 UTC; ken
Author: Kenneth Hoehn [aut, cre], Susanna Marquez [ctb], Jason Vander Heiden [ctb], Steven Kleinstein [aut, cph]
Maintainer: Kenneth Hoehn <kenneth.hoehn@yale.edu>
Repository: CRAN
Date/Publication: 2021-07-22 09:40:02 UTC

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Package treasuryTR updated to version 0.1.5 with previous version 0.1.4 dated 2021-05-28

Title: Generate Treasury Total Returns from Yield Data
Description: Generate Total Returns (TR) from bond yield data with fixed maturity, e.g. reported treasury yields. The generated TR series are very close to alternative series that can be purchased (e.g. CRSP, Bloomberg), suggesting they are a high-quality alternative for those, see Swinkels (2019) <doi:10.3390/data4030091>.
Author: Martin Geissmann [aut, cre]
Maintainer: Martin Geissmann <mg@econovo.ch>

Diff between treasuryTR versions 0.1.4 dated 2021-05-28 and 0.1.5 dated 2021-07-22

 DESCRIPTION              |    6 -
 MD5                      |   10 +-
 inst/doc/treasuryTR.R    |  179 +++++++++++++++++++++++------------------------
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 6 files changed, 171 insertions(+), 200 deletions(-)

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Package SSLR updated to version 0.9.3.3 with previous version 0.9.3.2 dated 2021-05-23

Title: Semi-Supervised Classification, Regression and Clustering Methods
Description: Providing a collection of techniques for semi-supervised classification, regression and clustering. In semi-supervised problem, both labeled and unlabeled data are used to train a classifier. The package includes a collection of semi-supervised learning techniques: self-training, co-training, democratic, decision tree, random forest, 'S3VM' ... etc, with a fairly intuitive interface that is easy to use.
Author: Francisco Jesús Palomares Alabarce [aut, cre] (<https://orcid.org/0000-0002-0499-7034>), José Manuel Benítez [ctb] (<https://orcid.org/0000-0002-2346-0793>), Isaac Triguero [ctb] (<https://orcid.org/0000-0002-0150-0651>), Christoph Bergmeir [ctb] (<https://orcid.org/0000-0002-3665-9021>), Mabel González [ctb] (<https://orcid.org/0000-0003-0152-444X>)
Maintainer: Francisco Jesús Palomares Alabarce <fpalomares@correo.ugr.es>

Diff between SSLR versions 0.9.3.2 dated 2021-05-23 and 0.9.3.3 dated 2021-07-22

 DESCRIPTION                          |    6 ++---
 MD5                                  |   40 +++++++++++++++++------------------
 NEWS.md                              |    8 +++++++
 demo/EMLeastSquaresClassifier.R      |    3 ++
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 demo/GRFClassifier.R                 |    4 ++-
 demo/LaplacianSVM.R                  |    4 +++
 demo/LinearTSVM.R                    |    6 +----
 demo/MCNearestMeanClassifier.R       |    2 +
 demo/TSVM.R                          |    6 +----
 demo/USMLeastSquaresClassifier.R     |    3 ++
 demo/WellSVM.R                       |    2 +
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 man/USMLeastSquaresClassifierSSLR.Rd |    3 ++
 man/WellSVMSSLR.Rd                   |    2 +
 21 files changed, 79 insertions(+), 41 deletions(-)

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Package Rttf2pt1 updated to version 1.3.9 with previous version 1.3.8 dated 2020-01-10

Title: 'ttf2pt1' Program
Description: Contains the program 'ttf2pt1', for use with the 'extrafont' package. This product includes software developed by the 'TTF2PT1' Project and its contributors.
Author: Winston Chang, Andrew Weeks, Frank M. Siegert, Mark Heath, Thomas Henlick, Sergey Babkin, Turgut Uyar, Rihardas Hepas, Szalay Tamas, Johan Vromans, Petr Titera, Lei Wang, Chen Xiangyang, Zvezdan Petkovic, Rigel, I. Lee Hetherington
Maintainer: Winston Chang <winston@stdout.org>

Diff between Rttf2pt1 versions 1.3.8 dated 2020-01-10 and 1.3.9 dated 2021-07-22

 DESCRIPTION       |    6 +++---
 MD5               |   10 +++++-----
 NEWS.md           |    5 +++++
 README.md         |    4 ++++
 src/ttf2pt1/pt1.c |   28 +++++++++++++++-------------
 src/ttf2pt1/pt1.h |    7 +++++--
 6 files changed, 37 insertions(+), 23 deletions(-)

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Package rgl updated to version 0.107.10 with previous version 0.106.8 dated 2021-04-23

Title: 3D Visualization Using OpenGL
Description: Provides medium to high level functions for 3D interactive graphics, including functions modelled on base graphics (plot3d(), etc.) as well as functions for constructing representations of geometric objects (cube3d(), etc.). Output may be on screen using OpenGL, or to various standard 3D file formats including WebGL, PLY, OBJ, STL as well as 2D image formats, including PNG, Postscript, SVG, PGF.
Author: Duncan Murdoch [aut, cre], Daniel Adler [aut], Oleg Nenadic [ctb], Simon Urbanek [ctb], Ming Chen [ctb], Albrecht Gebhardt [ctb], Ben Bolker [ctb], Gabor Csardi [ctb], Adam Strzelecki [ctb], Alexander Senger [ctb], The R Core Team [ctb, cph], Dirk Eddelbuettel [ctb], The authors of Shiny [cph], The authors of knitr [cph], Jeroen Ooms [ctb], Yohann Demont [ctb], Joshua Ulrich [ctb], Xavier Fernandez i Marin [ctb], George Helffrich [ctb], Ivan Krylov [ctb], Michael Sumner [ctb]
Maintainer: Duncan Murdoch <murdoch.duncan@gmail.com>

Diff between rgl versions 0.106.8 dated 2021-04-23 and 0.107.10 dated 2021-07-22

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New package powerEQTL with initial version 0.3.4
Package: powerEQTL
Title: Power and Sample Size Calculation for Bulk Tissue and Single-Cell eQTL Analysis
Version: 0.3.4
Date: 2021-07-21
Author: Xianjun Dong [aut, ctb], Xiaoqi Li [aut, ctb], Tzuu-Wang Chang [aut, ctb], Scott T. Weiss [aut, ctb], Weiliang Qiu [aut, cre]
Maintainer: Weiliang Qiu <weiliang.qiu@gmail.com>
Depends: R (>= 3.6.0)
Imports: stats, nlme, GLMMadaptive, parallel
Description: Power and sample size calculation for bulk tissue and single-cell eQTL analysis based on ANOVA, simple linear regression, or linear mixed effects model. It can also calculate power/sample size for testing the association of a SNP to a continuous type phenotype. Please see the reference: Dong X, Li X, Chang T-W, Scherzer CR, Weiss ST, Qiu W. (2021) <doi:10.1093/bioinformatics/btab385>.
License: GPL (>= 2)
URL: https://github.com/sterding/powerEQTL and https://bwhbioinfo.shinyapps.io/powerEQTL/
NeedsCompilation: no
Packaged: 2021-07-21 16:58:53 UTC; i0388414
Repository: CRAN
Date/Publication: 2021-07-22 08:30:02 UTC

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New package GeoFIS with initial version 1.0.1
Package: GeoFIS
Title: Spatial Data Processing for Decision Making
Version: 1.0.1
Author: Serge Guillaume [aut], Jean-Luc Lablée [aut, cre], INRAE [cph] (National Research Institute for Agriculture, Food and Environment, France)
Maintainer: Jean-Luc Lablée <jean-luc.lablee@inrae.fr>
URL: https://www.geofis.org
Description: Methods for processing spatial data for decision-making. This package is an R implementation of methods provided by the open source software GeoFIS <https://www.geofis.org> (Leroux et al. 2018) <doi:10.3390/agriculture8060073>. The main functionalities are the management zone delineation (Pedroso et al. 2010) <doi:10.1016/j.compag.2009.10.007> and data aggregation (Mora-Herrera et al. 2020) <doi:10.1016/j.compag.2020.105624>.
License: CeCILL
Encoding: UTF-8
Depends: R (>= 4.0.0), sp, data.tree, FisPro (>= 1.1.0)
Imports: methods, Rdpack, foreach, R6, Rcpp (>= 1.0.0), rgeos, nnls
SystemRequirements: GNU make, C++14, gmp, mpfr
RdMacros: Rdpack
NeedsCompilation: yes
LinkingTo: Rcpp, BH, FisPro
Suggests: testthat, rlang, knitr, rmarkdown, RColorBrewer, rgdal
VignetteBuilder: knitr
Packaged: 2021-07-21 09:02:54 UTC; jean-luc.lablee
Repository: CRAN
Date/Publication: 2021-07-22 08:20:13 UTC

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New package geodiv with initial version 1.0.3
Package: geodiv
Title: Methods for Calculating Gradient Surface Metrics
Version: 1.0.3
Author: Annie C. Smith, Phoebe Zarnetske, Kyla Dahlin, Adam Wilson, Andrew Latimer
Maintainer: Annie C. Smith <annie.smith@dnr.wa.gov>
Description: Methods for calculating gradient surface metrics for continuous analysis of landscape features.
URL: https://github.com/bioXgeo/geodiv
BugReports: https://github.com/bioXgeo/geodiv/issues
Depends: R (>= 3.5)
Imports: dplyr (>= 0.7.8), phonTools (>= 0.2-2.1), pracma (>= 2.2.2), raster (>= 2.8-4), rgdal (>= 1.4), spatial (>= 7.3-11), tibble (>= 1.4.2), e1071 (>= 1.7-0), sp (>= 1.3-1), rgeos (>= 0.4-3), parallel (>= 3.5.0), snow (>= 0.4-3), sf (>= 0.7-4), zoo (>= 1.8-5), Rcpp (>= 1.0.1), landscapemetrics(>= 1.5.2)
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
Suggests: testthat, ggplot2, rmarkdown, rasterVis, mapdata, maptools, maps, tidyverse, tidyr, ggmap, corrplot, cowplot, gridExtra, factoextra, cluster, knitr, rfigshare
LinkingTo: Rcpp, RcppArmadillo
VignetteBuilder: knitr
NeedsCompilation: yes
Packaged: 2021-07-20 20:53:47 UTC; lsth490
Repository: CRAN
Date/Publication: 2021-07-22 08:10:02 UTC

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New package funGp with initial version 0.2.2
Package: funGp
Title: Gaussian Process Models for Scalar and Functional Inputs
Version: 0.2.2
Maintainer: Jose Betancourt <djbetancourt@uninorte.edu.co>
Description: Construction and smart selection of Gaussian process models with emphasis on treatment of functional inputs. This package offers: (i) flexible modeling of functional-input regression problems through the fairly general Gaussian process model; (ii) built-in dimension reduction for functional inputs; (iii) heuristic optimization of the structural parameters of the model (e.g., active inputs, kernel function, type of distance). Metamodeling background is provided in Betancourt et al. (2020) <doi:10.1016/j.ress.2020.106870>. The algorithm for structural parameter optimization is described in <https://hal.archives-ouvertes.fr/hal-02532713>.
Note: research product of the RISCOPE project (ANR, project No.16CE04-0011) <https://perso.math.univ-toulouse.fr/riscope/>.
License: GPL-3
URL: https://djbetancourt-gh.github.io/funGp/
Imports: methods, foreach, knitr, scales, qdapRegex, microbenchmark, doFuture, future, progressr
Encoding: UTF-8
Collate: '0_funGp_Doc.R' '0_show_Doc.R' '8_outilsCode.R' '3_ant_admin.R' '2_fgpKern_Class.R' '2_fgpProj_Class.R' '1_fgpm_Class.R' '1_Xfgpm_Class.R' '3_ant_search.R' '3_training_F.R' '3_training_S.R' '3_training_SF.R' '4_prediction_F.R' '4_prediction_S.R' '4_prediction_SF.R' '5_simulation_F.R' '5_simulation_S.R' '5_simulation_SF.R' '6_updating.R' '7_blackBoxFunctions.R' '7_checkingFunctions.R' '7_correlFunctions.R' '7_dimRedFunctions.R' '7_distanceFunctions.R' '7_plottingFunctions.R' '8_outilsStats.R'
NeedsCompilation: no
Packaged: 2021-07-22 04:57:54 UTC; djbet
Author: Jose Betancourt [cre, aut], François Bachoc [aut], Thierry Klein [aut], Deborah Idier [ctb], Jeremy Rohmer [ctb]
Repository: CRAN
Date/Publication: 2021-07-22 08:40:05 UTC

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Package UScensus2010 updated to version 0.20.0 with previous version 0.11 dated 2012-07-12

Title: US Census 2010 Suite of R Packages
Description: US Census 2010 shape files and additional demographic data from the SF1 100 percent files. This package contains a number of helper functions for the UScensus2010blk, UScensus2010blkgrp, UScensus2010tract, UScensus2010cdp packages.
Author: Zack W. Almquist <zalmquist@uw.edu>
Maintainer: Zack W. Almquist <zalmquist@uw.edu>

Diff between UScensus2010 versions 0.11 dated 2012-07-12 and 0.20.0 dated 2021-07-22

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Package SMME updated to version 1.0.1 with previous version 1.0 dated 2021-07-19

Title: Soft Maximin Estimation for Large Scale Heterogeneous Data
Description: Efficient procedure for solving the soft maximin problem for large scale heterogeneous data, see Lund, Mogensen and Hansen (2021) <arXiv:1805.02407>. Currently Lasso and SCAD penalized estimation is implemented. Note this package subsumes and replaces the SMMA package.
Author: Adam Lund
Maintainer: Adam Lund <adam.lund@math.ku.dk>

Diff between SMME versions 1.0 dated 2021-07-19 and 1.0.1 dated 2021-07-22

 DESCRIPTION      |   10 +++++-----
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Package SignacX updated to version 2.2.4 with previous version 2.2.3 dated 2021-07-16

Title: Cell Type Identification and Discovery from Single Cell Gene Expression Data
Description: An implementation of neural networks trained with flow-sorted gene expression data to classify cellular phenotypes in single cell RNA-sequencing data. See Chamberlain M et al. (2021) <doi:10.1101/2021.02.01.429207> for more details.
Author: Mathew Chamberlain [aut, cre], Virginia Savova [aut], Richa Hanamsagar [aut], Frank Nestle [aut], Emanuele de Rinaldis [aut], Sanofi US [fnd]
Maintainer: Mathew Chamberlain <chamberlainphd@gmail.com>

Diff between SignacX versions 2.2.3 dated 2021-07-16 and 2.2.4 dated 2021-07-22

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Package rgeoda updated to version 0.0.8-3 with previous version 0.0.8-2 dated 2021-07-19

Title: R Library for Spatial Data Analysis
Description: Provides spatial data analysis functionalities including Exploratory Spatial Data Analysis, Spatial Cluster Detection and Clustering Analysis, Regionalization, etc. based on the C++ source code of 'GeoDa', which is an open-source software tool that serves as an introduction to spatial data analysis. The 'GeoDa' software and its documentation are available at <https://geodacenter.github.io>.
Author: Xun Li [aut, cre], Luc Anselin [aut]
Maintainer: Xun Li <lixun910@gmail.com>

Diff between rgeoda versions 0.0.8-2 dated 2021-07-19 and 0.0.8-3 dated 2021-07-22

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Package PlanetNICFI updated to version 1.0.3 with previous version 1.0.1 dated 2021-06-14

Title: Processing of the 'Planet NICFI' Satellite Imagery
Description: It includes functions to download and process the 'Planet NICFI' (Norway's International Climate and Forest Initiative) Satellite Imagery utilizing the Planet Mosaics API <https://developers.planet.com/docs/basemaps/reference/#tag/Basemaps-and-Mosaics>. 'GDAL' (library for raster and vector geospatial data formats) and 'aria2c' (paralleled download utility) must be installed and configured in the user's Operating System.
Author: Lampros Mouselimis [aut, cre] (<https://orcid.org/0000-0002-8024-1546>), Planet Labs Inc [cph]
Maintainer: Lampros Mouselimis <mouselimislampros@gmail.com>

Diff between PlanetNICFI versions 1.0.1 dated 2021-06-14 and 1.0.3 dated 2021-07-22

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Package gitdown updated to version 0.1.3 with previous version 0.1.1 dated 2021-05-10

Title: Turn Your Git Commit Messages into a HTML Book
Description: Read all commit messages of your local git repository and sort them according to tags or specific text pattern into chapters of a HTML book using 'bookdown'. The git history book presentation helps organisms required to testify for every changes in their source code, in relation to features requests.
Author: Sébastien Rochette [aut, cre] (<https://orcid.org/0000-0002-1565-9313>), Cervan Girard [aut] (<https://orcid.org/0000-0002-4816-4624>), ThinkR [cph], Institut de Recherches Internationales Servier [spn]
Maintainer: Sébastien Rochette <sebastien@thinkr.fr>

Diff between gitdown versions 0.1.1 dated 2021-05-10 and 0.1.3 dated 2021-07-22

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Package garma updated to version 0.9.8 with previous version 0.9.7 dated 2021-01-06

Title: Fitting and Forecasting Gegenbauer ARMA Time Series Models
Description: Methods for estimating univariate long memory-seasonal/cyclical Gegenbauer time series processes. See for example (2018) <doi:10.1214/18-STS649>. Refer to the vignette for details of fitting these processes.
Author: Richard Hunt [aut, cre]
Maintainer: Richard Hunt <maint@huntemail.id.au>

Diff between garma versions 0.9.7 dated 2021-01-06 and 0.9.8 dated 2021-07-22

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Package dialrjars updated to version 8.12.28 with previous version 8.12.26 dated 2021-07-04

Title: Required 'libphonenumber' jars for the 'dialr' Package
Description: Collects 'libphonenumber' jars required for the 'dialr' package.
Author: Danny Smith [aut, cre], Google Inc. [ctb, cph] (libphonenumber), Vonage Holdings Corp. [ctb, cph] (libphonenumber), Ian Galpin [ctb, cph] (libphonenumber), Ben Gertzfield [ctb, cph] (libphonenumber)
Maintainer: Danny Smith <danny@gorcha.org>

Diff between dialrjars versions 8.12.26 dated 2021-07-04 and 8.12.28 dated 2021-07-22

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New package RMBC with initial version 0.1.0
Package: RMBC
Title: Robust Model Based Clustering
Version: 0.1.0
Author: Juan Domingo Gonzalez [cre, aut], Victor J. Yohai [aut], Ruben H. Zamar [aut], Ricardo Maronna [aut]
Maintainer: Juan Domingo Gonzalez <juanrst@hotmail.com>
Description: A robust clustering algorithm (Model-Based) similar to Expectation Maximization for finite mixture normal distributions is implemented, its main advantage is that the estimator is resistant to outliers, that means that results of parameter estimation are still correct when there are atypical values in the sample (see Gonzalez, Maronna, Yohai and Zamar (2021) <arxiv:2102.06851>).
License: GPL (>= 2)
Encoding: UTF-8
Depends: R (>= 3.5.0), stats
LazyData: true
Suggests: tclust, knitr, testthat (>= 2.1.0), rmarkdown
Imports: ktaucenters, mvtnorm, MASS
NeedsCompilation: no
Packaged: 2021-07-20 23:48:38 UTC; juan
Repository: CRAN
Date/Publication: 2021-07-22 06:40:05 UTC

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Package RcppSpdlog updated to version 0.0.6 with previous version 0.0.5 dated 2021-03-28

Title: 'spdlog' C++ Header Library for Logging
Description: The mature and widely-used C++ logging library 'spdlog' by Gabi Melman provides many desirable features. This package bundles these header files for easy use by R packages via a simple 'LinkingTo:' inclusion.
Author: Dirk Eddelbuettel
Maintainer: Dirk Eddelbuettel <edd@debian.org>

Diff between RcppSpdlog versions 0.0.5 dated 2021-03-28 and 0.0.6 dated 2021-07-22

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New package pathlit with initial version 0.1.0
Package: pathlit
Title: An SDK for the PathLit Engine
Version: 0.1.0
Description: This wrapper houses PathLit API endpoints for R. The usage of these endpoints require the use of an API key which can be obtained at <https://www.pathlit.io/docs/cli/>.
License: GPL (>= 3)
Encoding: UTF-8
Depends: R (>= 2.10)
Imports: httr, jsonlite, timeSeries, parallel, testthat, usethis, utils
URL: https://www.pathlit.io
NeedsCompilation: no
Packaged: 2021-07-21 12:35:25 UTC; riasataliistiaque
Author: Riasat Ali Istiaque [aut, cre, ctb], Nicolas Mas [ctb, rev]
Maintainer: Riasat Ali Istiaque <riasat.istiaque@pathlit.io>
Repository: CRAN
Date/Publication: 2021-07-22 07:00:02 UTC

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New package objectProperties with initial version 0.6.7
Package: objectProperties
Title: A Factory of Self-Describing Properties
Description: Supports the definition of sets of properties on objects. Observers can listen to changes on individual properties or the set as a whole. The properties are meant to be fully self-describing. In support of this, there is a framework for defining enumerated types, as well as other bounded types, as S4 classes.
Maintainer: Michael Lawrence <michafla@gene.com>
Depends: R (>= 2.12), objectSignals (>= 0.10.2)
Imports: methods
Version: 0.6.7
License: GPL (>= 2)
Collate: PropertySet-class.R Enum-class.R comp-classes.R
NeedsCompilation: no
Packaged: 2021-07-21 17:31:12 UTC; michafla
Author: Tengfei Yin [aut], Michael Lawrence [aut, cre]
Repository: CRAN
Date/Publication: 2021-07-22 07:00:04 UTC

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New package GARCHSK with initial version 0.1.0
Package: GARCHSK
Title: Estimating a GARCHSK Model and GJRSK Model
Version: 0.1.0
Description: Functions for estimating a GARCHSK model and GJRSK model based on a publication by Leon et,al (2005)<doi:10.1016/j.qref.2004.12.020> and Nakagawa and Uchiyama (2020)<doi:10.3390/math8111990>. These are a GARCH-type model allowing for time-varying volatility, skewness and kurtosis.
License: GPL (>= 2)
LazyData: TRUE
Imports: stats, Rsolnp
NeedsCompilation: no
Packaged: 2021-07-21 23:53:27 UTC; keina
Author: Kei Nakagawa [aut, cre] (<https://orcid.org/0000-0001-5046-8128>)
Maintainer: Kei Nakagawa <kei.nak.0315@gmail.com>
Repository: CRAN
Date/Publication: 2021-07-22 07:00:07 UTC

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New package codemeta with initial version 0.1.0
Package: codemeta
Title: A Smaller 'codemetar' Package
Version: 0.1.0
Description: The 'Codemeta' Project defines a 'JSON-LD' format for describing software metadata, as detailed at <https://codemeta.github.io>. This package provides core utilities to generate this metadata with a minimum of dependencies.
License: GPL-3
URL: https://github.com/cboettig/codemeta
BugReports: https://github.com/cboettig/codemeta/issues
Depends: R (>= 3.0.0)
Imports: desc, jsonlite (>= 1.6), methods, utils
Suggests: covr, knitr, rmarkdown, testthat (>= 2.1.0)
Encoding: UTF-8
X-schema.org-isPartOf: https://ropensci.org
X-schema.org-keywords: metadata, codemeta, ropensci, citation, credit, linked-data
NeedsCompilation: no
Packaged: 2021-07-20 23:29:02 UTC; cboettig
Author: Carl Boettiger [aut, cre, cph] (<https://orcid.org/0000-0002-1642-628X>), Maëlle Salmon [ctb, aut] (<https://orcid.org/0000-0002-2815-0399>), Katrin Leinweber [ctb] (<https://orcid.org/0000-0001-5135-5758>), Noam Ross [ctb] (<https://orcid.org/0000-0002-2136-0000>), Arfon Smith [ctb], Jeroen Ooms [ctb] (<https://orcid.org/0000-0002-4035-0289>), Sebastian Meyer [ctb] (<https://orcid.org/0000-0002-1791-9449>), Michael Rustler [ctb] (<https://orcid.org/0000-0003-0647-7726>), Hauke Sonnenberg [ctb] (<https://orcid.org/0000-0001-9134-2871>), Sebastian Kreutzer [ctb] (<https://orcid.org/0000-0002-0734-2199>), rOpenSci [fnd] (https://ropensci.org/)
Maintainer: Carl Boettiger <cboettig@gmail.com>
Repository: CRAN
Date/Publication: 2021-07-22 06:40:02 UTC

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New package AvInertia with initial version 0.0.1
Package: AvInertia
Title: Calculate the Inertial Properties of a Flying Bird
Version: 0.0.1
Description: Tools to compute the center of gravity and moment of inertia tensor of any flying bird. The tools function by modeling a bird as a composite structure of simple geometric objects. This requires detailed morphological measurements of bird specimens although those obtained for the associated paper have been included in the package for use. Refer to the vignettes and supplementary material for detailed information on the package function.
License: GPL-3
Encoding: UTF-8
LazyData: true
Imports: pracma, readxl, ggplot2, stringr, tidyr, ggthemes, reshape2
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
Depends: R (>= 3.5.0)
URL: https://github.com/charvey23/AvInertia
BugReports: https://github.com/charvey23/AvInertia/issues
NeedsCompilation: no
Packaged: 2021-07-21 18:10:13 UTC; christinaharvey
Author: Christina Harvey [aut, cre] (<https://orcid.org/0000-0002-2830-0844>), Vikram B. Baliga [aut] (<https://orcid.org/0000-0002-9367-8974>), Jasmin C.M. Wong [aut] (<https://orcid.org/0000-0003-4648-2503>)
Maintainer: Christina Harvey <harveyca@umich.edu>
Repository: CRAN
Date/Publication: 2021-07-22 07:00:09 UTC

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New package AovBay with initial version 0.1.0
Package: AovBay
Title: Classic, Nonparametric and Bayesian One-Way Analysis of Variance Panel
Version: 0.1.0
Description: It covers various approaches to analysis of variance, provides an assumption testing section in order to provide a decision diagram that allows selecting the most appropriate technique. It provides the classical analysis of variance, the nonparametric equivalent of Kruskal Wallis, and the Bayesian approach. These results are shown in an interactive shiny panel, which allows modifying the arguments of the tests, contains interactive graphics and presents automatic conclusions depending on the tests in order to contribute to the interpretation of these analyzes. 'AovBay' uses 'Stan' and 'FactorBayes' for Bayesian analysis and 'Highcharts' for interactive charts.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
Biarch: true
Depends: R (>= 3.4.0)
Imports: methods, DT, shiny, shinydashboardPlus, shinydashboard, Rcpp (>= 0.12.0), RcppParallel (>= 5.0.1), rstan (>= 2.18.1), rstantools (>= 2.1.1), dplyr, tibble, BayesFactor, broom, car, highcharter, moments, reshape, nortest, purrr, shinycssloaders, stringr, waiter, htmltools
LinkingTo: BH (>= 1.66.0), Rcpp (>= 0.12.0), RcppEigen (>= 0.3.3.3.0), RcppParallel (>= 5.0.1), rstan (>= 2.18.1), StanHeaders (>= 2.18.0)
SystemRequirements: GNU make
NeedsCompilation: yes
Packaged: 2021-07-20 21:32:02 UTC; javierrojas
Author: Mauricio Rojas-Campuzano [aut, cre, ctb], Johny Pambabay-Calero [aut, ctb], Sergio Bauz-Olvera [ctb], Omar Ruiz-Barzola [ctb]
Maintainer: Mauricio Rojas-Campuzano <maujroja@espol.edu.ec>
Repository: CRAN
Date/Publication: 2021-07-22 06:30:02 UTC

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Package meedr (with last version 0.0.2) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2021-07-21 0.0.2

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Package stplanr updated to version 0.8.3 with previous version 0.8.2 dated 2021-04-06

Title: Sustainable Transport Planning
Description: Tools for transport planning with an emphasis on spatial transport data and non-motorized modes. Enables common transport planning tasks including: downloading and cleaning transport datasets; creating geographic "desire lines" from origin-destination (OD) data; route assignment, locally and via interfaces to routing services such as <https://cyclestreets.net/> and calculation of route segment attributes such as bearing. The package implements the 'travel flow aggregration' method described in Morgan and Lovelace (2020) <doi:10.1177/2399808320942779>. Further information on the package's aim and scope can be found in the vignettes and in a paper in the R Journal (Lovelace and Ellison 2018) <doi:10.32614/RJ-2018-053>.
Author: Robin Lovelace [aut, cre] (<https://orcid.org/0000-0001-5679-6536>), Richard Ellison [aut], Malcolm Morgan [aut] (<https://orcid.org/0000-0002-9488-9183>), Barry Rowlingson [ctb], Nick Bearman [ctb], Nikolai Berkoff [ctb], Scott Chamberlain [rev] (Scott reviewed the package for rOpenSci, see https://github.com/ropensci/onboarding/issues/10), Mark Padgham [ctb], Andrea Gilardi [ctb] (<https://orcid.org/0000-0002-9424-7439>)
Maintainer: Robin Lovelace <rob00x@gmail.com>

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Package speakr updated to version 3.2.0 with previous version 3.1.1 dated 2021-04-21

Title: A Wrapper for the Phonetic Software 'Praat'
Description: It allows running 'Praat' scripts from R and it provides some wrappers for basic plotting. It also adds support for literate markdown tangling. The package is designed to bring reproducible phonetic research into R.
Author: Stefano Coretta [aut, cre] (<https://orcid.org/0000-0001-9627-5532>, stefanocoretta)
Maintainer: Stefano Coretta <stefano.coretta@gmail.com>

Diff between speakr versions 3.1.1 dated 2021-04-21 and 3.2.0 dated 2021-07-22

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Package REDCapR updated to version 1.0.0 with previous version 0.11.0 dated 2020-04-21

Title: Interaction Between R and REDCap
Description: Encapsulates functions to streamline calls from R to the REDCap API. REDCap (Research Electronic Data CAPture) is a web application for building and managing online surveys and databases developed at Vanderbilt University. The Application Programming Interface (API) offers an avenue to access and modify data programmatically, improving the capacity for literate and reproducible programming.
Author: Will Beasley [aut, cre] (<https://orcid.org/0000-0002-5613-5006>), David Bard [ctb], Thomas Wilson [ctb], John J Aponte [ctb], Rollie Parrish [ctb], Benjamin Nutter [ctb], Andrew Peters [ctb], Hao Zhu [ctb] (<https://orcid.org/0000-0002-3386-6076>), Felix Torres [ctb], Philip Chase [ctb]
Maintainer: Will Beasley <wibeasley@hotmail.com>

Diff between REDCapR versions 0.11.0 dated 2020-04-21 and 1.0.0 dated 2021-07-22

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 NAMESPACE                                                                      |    2 
 NEWS.md                                                                        |   41 
 R/REDCapR-package.R                                                            |   20 
 R/helpers-testing.R                                                            |   15 
 R/kernel-api.R                                                                 |    4 
 R/project-simple.R                                                             |   12 
 R/redcap-download-file-oneshot.R                                               |   12 
 R/redcap-download-instrument.R                                                 |    2 
 R/redcap-metadata-read.R                                                       |    7 
 R/redcap-metadata-write.R                                                      |    4 
 R/redcap-project.R                                                             |    4 
 R/redcap-read-oneshot-eav.R                                                    |   38 
 R/redcap-read-oneshot.R                                                        |   48 
 R/redcap-read.R                                                                |   39 
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 R/redcap-upload-file-oneshot.R                                                 |    2 
 R/redcap-users-export.R                                                        |    5 
 R/redcap-variables.R                                                           |    8 
 R/redcap-write-oneshot.R                                                       |   27 
 R/redcap-write.R                                                               |   23 
 R/retrieve-credential.R                                                        |  128 +
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Package lefko3 updated to version 3.6.0 with previous version 3.5.2 dated 2021-07-12

Title: Historical and Ahistorical Population Projection Matrix Analysis
Description: Creates matrix population models for use in population ecological analyses. Specializes on the construction of historical matrices, which are 2d matrices comprising 3 consecutive times of demographic information. Estimates both raw and function-based forms of historical and standard ahistorical matrices. It also estimates function-based age-by-stage matrices. Methodology based on Ehrlen (2000) <doi:10.1890/0012-9658(2000)081[1675:TDOPPD]2.0.CO;2>.
Author: Richard P. Shefferson [aut, cre] (<https://orcid.org/0000-0002-5234-3131>), Johan Ehrlen [aut] (<https://orcid.org/0000-0001-8539-8967>)
Maintainer: Richard P. Shefferson <cdorm@g.ecc.u-tokyo.ac.jp>

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Package languageserver updated to version 0.3.11 with previous version 0.3.10 dated 2021-04-20

Title: Language Server Protocol
Description: An implementation of the Language Server Protocol for R. The Language Server protocol is used by an editor client to integrate features like auto completion. See <https://microsoft.github.io/language-server-protocol/> for details.
Author: Randy Lai [aut, cre], Kun Ren [ctb]
Maintainer: Randy Lai <randy.cs.lai@gmail.com>

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 languageserver-0.3.11/languageserver/R/code_action.R                                     |only
 languageserver-0.3.11/languageserver/R/color.R                                           |    4 
 languageserver-0.3.11/languageserver/R/completion.R                                      |   30 
 languageserver-0.3.11/languageserver/R/definition.R                                      |    4 
 languageserver-0.3.11/languageserver/R/diagnostics.R                                     |   59 +
 languageserver-0.3.11/languageserver/R/document.R                                        |  317 ++++++----
 languageserver-0.3.11/languageserver/R/folding.R                                         |    2 
 languageserver-0.3.11/languageserver/R/formatting.R                                      |   21 
 languageserver-0.3.11/languageserver/R/handlers-general.R                                |   29 
 languageserver-0.3.11/languageserver/R/handlers-langfeatures.R                           |   67 +-
 languageserver-0.3.11/languageserver/R/handlers-protocol.R                               |only
 languageserver-0.3.11/languageserver/R/handlers-textsync.R                               |   22 
 languageserver-0.3.11/languageserver/R/handlers-workspace.R                              |   60 +
 languageserver-0.3.11/languageserver/R/highlight.R                                       |    2 
 languageserver-0.3.11/languageserver/R/hover.R                                           |    8 
 languageserver-0.3.11/languageserver/R/interfaces.R                                      |   46 -
 languageserver-0.3.11/languageserver/R/languageclient.R                                  |    2 
 languageserver-0.3.11/languageserver/R/languageserver.R                                  |   28 
 languageserver-0.3.11/languageserver/R/link.R                                            |    4 
 languageserver-0.3.11/languageserver/R/log.R                                             |   35 -
 languageserver-0.3.11/languageserver/R/namespace.R                                       |    4 
 languageserver-0.3.11/languageserver/R/protocol.R                                        |   10 
 languageserver-0.3.11/languageserver/R/references.R                                      |    2 
 languageserver-0.3.11/languageserver/R/rename.R                                          |    2 
 languageserver-0.3.11/languageserver/R/selection.R                                       |    2 
 languageserver-0.3.11/languageserver/R/session.R                                         |    4 
 languageserver-0.3.11/languageserver/R/settings.R                                        |only
 languageserver-0.3.11/languageserver/R/signature.R                                       |    6 
 languageserver-0.3.11/languageserver/R/symbol.R                                          |    4 
 languageserver-0.3.11/languageserver/R/task.R                                            |    2 
 languageserver-0.3.11/languageserver/R/utils.R                                           |   61 +
 languageserver-0.3.11/languageserver/R/workspace.R                                       |    7 
 languageserver-0.3.11/languageserver/R/zzz.R                                             |only
 languageserver-0.3.11/languageserver/README.md                                           |  119 ++-
 languageserver-0.3.11/languageserver/man/diagnostics.Rd                                  |   11 
 languageserver-0.3.11/languageserver/man/document_code_action_reply.Rd                   |only
 languageserver-0.3.11/languageserver/tests/testthat/helper-utils.R                       |   23 
 languageserver-0.3.11/languageserver/tests/testthat/test-code-action.R                   |only
 languageserver-0.3.11/languageserver/tests/testthat/test-completion.R                    |  111 +++
 languageserver-0.3.11/languageserver/tests/testthat/test-lintr.R                         |   56 +
 languageserver-0.3.11/languageserver/tests/testthat/test-symbol.R                        |   30 
 languageserver-0.3.11/languageserver/tests/testthat/test-unicode-path.R                  |    2 
 languageserver-0.3.11/languageserver/tests/testthat/test-workspace.R                     |only
 176 files changed, 888 insertions(+), 568 deletions(-)

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New package ISLR2 with initial version 1.0
Package: ISLR2
Title: Introduction to Statistical Learning, Second Edition
Version: 1.0
Date: 2021-07-20
Suggests: MASS
Description: We provide the collection of data-sets used in the book 'An Introduction to Statistical Learning with Applications in R, Second Edition'. These include many data-sets that we used in the first edition (some with minor changes), and some new datasets.
Depends: R (>= 3.5.0)
License: GPL-2
LazyLoad: yes
LazyData: yes
URL: https://www.statlearning.com
NeedsCompilation: no
Packaged: 2021-07-20 18:15:47 UTC; hastie
Author: Gareth James [aut], Daniela Witten [aut], Trevor Hastie [aut, cre], Rob Tibshirani [aut], Balasubramanian Narasimhan [ctb]
Maintainer: Trevor Hastie <hastie@stanford.edu>
Repository: CRAN
Date/Publication: 2021-07-22 06:00:02 UTC

More information about ISLR2 at CRAN
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Package elevatr updated to version 0.4.1 with previous version 0.4.0 dated 2021-07-19

Title: Access Elevation Data from Various APIs
Description: Several web services are available that provide access to elevation data. This package provides access to several of those services and returns elevation data either as a SpatialPointsDataFrame from point elevation services or as a raster object from raster elevation services. Currently, the package supports access to the Amazon Web Services Terrain Tiles <https://registry.opendata.aws/terrain-tiles/>, the Open Topography Global Datasets API <https://opentopography.org/developers/>, and the USGS Elevation Point Query Service <https://nationalmap.gov/epqs/>.
Author: Jeffrey Hollister [aut, cre] (<https://orcid.org/0000-0002-9254-9740>), Tarak Shah [ctb], Alec L. Robitaille [ctb] (<https://orcid.org/0000-0002-4706-1762>), Marcus W. Beck [rev] (<https://orcid.org/0000-0002-4996-0059>), Mike Johnson [ctb] (<https://orcid.org/0000-0002-5288-8350>)
Maintainer: Jeffrey Hollister <hollister.jeff@epa.gov>

Diff between elevatr versions 0.4.0 dated 2021-07-19 and 0.4.1 dated 2021-07-22

 DESCRIPTION                           |    6 +++---
 MD5                                   |   16 ++++++++--------
 R/get_elev_point.R                    |    6 ++++--
 inst/CITATION                         |    9 +++++----
 inst/doc/introduction_to_elevatr.html |    4 ++--
 man/get_elev_point.Rd                 |    2 +-
 tests/testthat/test-get_elev_point.R  |    2 +-
 tests/testthat/test-get_elev_raster.R |    2 +-
 tests/testthat/test-internal.R        |    2 +-
 9 files changed, 26 insertions(+), 23 deletions(-)

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