Title: Variable Table for Variable Documentation
Description: Automatically generates HTML variable documentation including variable names, labels, classes, value labels (if applicable), value ranges, and summary statistics. See the vignette "vtable" for a package overview.
Author: Nick Huntington-Klein [aut, cre]
Maintainer: Nick Huntington-Klein <nhuntington-klein@seattleu.edu>
Diff between vtable versions 1.3.2 dated 2021-05-28 and 1.3.3 dated 2021-08-05
DESCRIPTION | 6 +++--- MD5 | 18 +++++++++--------- NEWS.md | 4 ++++ R/sumtable.R | 6 ++++++ inst/doc/dftotable.html | 4 ++-- inst/doc/labeltable.html | 4 ++-- inst/doc/sumtable.html | 4 ++-- inst/doc/vtable.html | 4 ++-- inst/doc/vtablefunction.html | 4 ++-- inst/doc/vtablehelpers.html | 10 +++++----- 10 files changed, 37 insertions(+), 27 deletions(-)
Title: A System of Soil Classification for Making and Interpreting Soil
Surveys
Description: Taxonomic dictionaries, formative element lists, and functions related to the maintenance, development and application of U.S. Soil Taxonomy.
Data and functionality are based on official U.S. Department of Agriculture sources including the latest edition of the Keys to Soil Taxonomy. Descriptions and metadata are obtained from the National Soil Information System or Soil Survey Geographic databases. Other sources are referenced in the data documentation.
Provides tools for understanding and interacting with concepts in the U.S. Soil Taxonomic System. Most of the current utilities are for working with taxonomic concepts at the "higher" taxonomic levels: Order, Suborder, Great Group, and Subgroup.
Author: Dylan Beaudette [aut],
Andrew Brown [aut, cre]
Maintainer: Andrew Brown <andrew.g.brown@usda.gov>
Diff between SoilTaxonomy versions 0.1.3 dated 2021-05-03 and 0.1.4 dated 2021-08-05
DESCRIPTION | 6 MD5 | 22 - NEWS.md | 3 build/vignette.rds |binary data/ST_formative_elements.rda |binary inst/doc/Family-level_Taxonomy.R | 42 - inst/doc/Family-level_Taxonomy.Rmd | 4 inst/doc/Family-level_Taxonomy.html | 488 +++++++++++------------ inst/doc/taxon-letter-codes.R | 120 ++--- inst/doc/taxon-letter-codes.html | 591 ++++++++++++++-------------- tests/testthat/test-ST-element-validation.R | 50 +- vignettes/Family-level_Taxonomy.Rmd | 4 12 files changed, 670 insertions(+), 660 deletions(-)
Title: R Library for Spatial Data Analysis
Description: Provides spatial data analysis functionalities including Exploratory Spatial Data Analysis,
Spatial Cluster Detection and Clustering Analysis, Regionalization, etc. based on the C++ source code
of 'GeoDa', which is an open-source software tool that serves as an introduction to spatial data analysis.
The 'GeoDa' software and its documentation are available at <https://geodacenter.github.io>.
Author: Xun Li [aut, cre],
Luc Anselin [aut]
Maintainer: Xun Li <lixun910@gmail.com>
Diff between rgeoda versions 0.0.8-3 dated 2021-07-22 and 0.0.8-4 dated 2021-08-05
DESCRIPTION | 8 MD5 | 140 ++++----- R/clustering.R | 3 R/init.R | 12 R/lisa.R | 423 ++++++++++++++++++---------- R/read_geoda.R | 28 + R/rgeoda.R | 71 ++-- R/sf_geoda.R | 35 +- R/utils.R | 41 +- R/weights.R | 374 ++++++++++++++++-------- man/LISA-class.Rd | 9 man/Weight-class.Rd | 10 man/as.data.frame.geoda.Rd | 3 man/as.geoda.Rd | 6 man/as.matrix.Weight.Rd | 11 man/distance_weights.Rd | 12 man/eb_rates.Rd | 8 man/gda_distance_weights.Rd | 12 man/gda_kernel_knn_weights.Rd | 24 + man/gda_kernel_weights.Rd | 24 + man/gda_knn_weights.Rd | 15 man/gda_min_distthreshold.Rd | 12 man/gda_queen_weights.Rd | 10 man/gda_rook_weights.Rd | 10 man/geoda-class.Rd | 3 man/geoda_open.Rd | 6 man/get_neighbors_weights.Rd | 3 man/has_isolates.Rd | 3 man/hinge15_breaks.Rd | 3 man/hinge30_breaks.Rd | 3 man/kernel_knn_weights.Rd | 24 + man/kernel_weights.Rd | 21 - man/knn_weights.Rd | 12 man/lisa_bo.Rd | 3 man/lisa_clusters.Rd | 3 man/lisa_fdr.Rd | 3 man/lisa_pvalues.Rd | 3 man/lisa_values.Rd | 3 man/local_bijoincount.Rd | 15 man/local_g.Rd | 12 man/local_geary.Rd | 12 man/local_gstar.Rd | 12 man/local_joincount.Rd | 12 man/local_moran.Rd | 12 man/local_moran_eb.Rd | 19 - man/local_multigeary.Rd | 15 man/local_multijoincount.Rd | 21 - man/local_multiquantilelisa.Rd | 24 + man/local_quantilelisa.Rd | 15 man/min_distthreshold.Rd | 9 man/natural_breaks.Rd | 3 man/neighbor_match_test.Rd | 26 + man/p_GeoDaTable-class.Rd | 3 man/p_GeoDaWeight-class.Rd | 3 man/percentile_breaks.Rd | 3 man/quantile_breaks.Rd | 3 man/queen_weights.Rd | 10 man/read_gal.Rd | 3 man/read_gwt.Rd | 3 man/read_swm.Rd | 3 man/rook_weights.Rd | 10 man/save_weights.Rd | 5 man/set_neighbors.Rd | 3 man/set_neighbors_with_weights.Rd | 6 man/sf_to_geoda.Rd | 7 man/skater.Rd | 3 man/sp_to_geoda.Rd | 6 man/spatial_lag.Rd | 3 man/stddev_breaks.Rd | 4 man/update_weights.Rd | 3 src/libgeoda/weights/PolysToContigWeights.h | 6 71 files changed, 1081 insertions(+), 607 deletions(-)
Title: Helper Functions to Install and Maintain TeX Live, and Compile
LaTeX Documents
Description: Helper functions to install and maintain the 'LaTeX' distribution
named 'TinyTeX' (<https://yihui.org/tinytex/>), a lightweight, cross-platform,
portable, and easy-to-maintain version of 'TeX Live'. This package also
contains helper functions to compile 'LaTeX' documents, and install missing
'LaTeX' packages automatically.
Author: Yihui Xie [aut, cre, cph] (<https://orcid.org/0000-0003-0645-5666>),
RStudio, PBC [cph],
Christophe Dervieux [ctb] (<https://orcid.org/0000-0003-4474-2498>),
Devon Ryan [ctb] (<https://orcid.org/0000-0002-8549-0971>),
Ethan Heinzen [ctb],
Fernando Cagua [ctb]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between tinytex versions 0.32 dated 2021-05-29 and 0.33 dated 2021-08-05
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/install.R | 4 +++- R/latex.R | 12 ++++++++---- 4 files changed, 17 insertions(+), 11 deletions(-)
Title: Read and Write Rectangular Text Data Quickly
Description: The goal of 'vroom' is to read and write data (like
'csv', 'tsv' and 'fwf') quickly. When reading it uses a quick initial
indexing step, then reads the values lazily , so only the data you
actually use needs to be read. The writer formats the data in
parallel and writes to disk asynchronously from formatting.
Author: Jim Hester [aut, cre] (<https://orcid.org/0000-0002-2739-7082>),
Hadley Wickham [aut] (<https://orcid.org/0000-0003-4757-117X>),
https://github.com/mandreyel/ [cph] (mio library),
Jukka Jylänki [cph] (grisu3 implementation),
Mikkel Jørgensen [cph] (grisu3 implementation),
RStudio [cph, fnd]
Maintainer: Jim Hester <jim.hester@rstudio.com>
Diff between vroom versions 1.5.3 dated 2021-07-14 and 1.5.4 dated 2021-08-05
DESCRIPTION | 6 ++-- MD5 | 38 ++++++++++++++-------------- NEWS.md | 11 ++++++++ R/col_types.R | 48 ++++++++++++++++++++++++++---------- R/utils.R | 9 +++++- R/vroom_write.R | 12 ++++++--- build/vroom.pdf |binary inst/doc/vroom.html | 42 +++++++++++++++---------------- man/cols.Rd | 32 +++++++++++++----------- src/delimited_index.cc | 33 ++++++++++++++++++------ src/delimited_index_connection.cc | 6 ++-- src/fixed_width_index.h | 28 ++++++++++++++++++--- src/fixed_width_index_connection.cc | 12 ++++++--- src/r_utils.h | 12 ++++++--- src/utils.h | 15 ++++++----- src/vroom_fwf.cc | 9 ++++-- src/vroom_write.cc | 4 ++- tests/testthat/test-col_types.R | 2 - tests/testthat/test-vroom.R | 14 ++++++++++ tests/testthat/test-vroom_write.R | 31 +++++++++++++++++++++-- 20 files changed, 251 insertions(+), 113 deletions(-)
Title: Time-Varying Effect Models
Description: Fits time-varying effect models (TVEM). These are a kind of application of varying-coefficient models in the context of longitudinal data, allowing the strength of linear, logistic, or Poisson regression relationships to change over time. These models are described further in Tan, Shiyko, Li, Li & Dierker (2012) <doi:10.1037/a0025814>. We thank Kaylee Litson, Patricia Berglund, and Yajnaseni Chakraborti for their valuable help with testing the package and documentation. The development of this package was part of a research project supported by National Institutes of Health grants P50 DA039838 from the National Institute of Drug Abuse and 1R01 CA229542-01 from the National Cancer Institute and the NIH Office of Behavioral and Social Science Research. Content is solely the responsibility of the authors and does not necessarily represent the official views of the funding institutions mentioned above. This software is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.
Author: John J. Dziak [aut, cre] (<https://orcid.org/0000-0003-0762-5495>),
Donna L. Coffman [aut] (<https://orcid.org/0000-0001-6305-6579>),
Runze Li [aut] (<https://orcid.org/0000-0002-0154-2202>),
Kaylee Litson [aut] (<https://orcid.org/0000-0003-1296-4811>),
Yajnaseni Chakraborti [aut]
Maintainer: John J. Dziak <dziakj1@gmail.com>
Diff between tvem versions 1.2-0 dated 2021-02-19 and 1.3 dated 2021-08-05
DESCRIPTION | 8 MD5 | 10 R/tvem.r | 18 build/vignette.rds |binary inst/doc/vignette-tvem.html | 1064 ++++++++++++++++---------------------------- man/tvem.Rd | 9 6 files changed, 439 insertions(+), 670 deletions(-)
Title: Descriptive Statistics
Description: Computation of standardized interquartile range (IQR), Huber-type skipped mean (Hampel (1985), <doi:10.2307/1268758>), robust coefficient of variation (CV) (Arachchige et al. (2019), <arXiv:1907.01110>), robust signal to noise ratio (SNR), z-score, standardized mean difference (SMD), as well as functions that support graphical visualization such as boxplots based on quartiles (not hinges), negative logarithms and generalized logarithms for 'ggplot2' (Wickham (2016), ISBN:978-3-319-24277-4).
Author: Matthias Kohl [aut, cre] (<https://orcid.org/0000-0001-9514-8910>)
Maintainer: Matthias Kohl <Matthias.Kohl@stamats.de>
Diff between MKdescr versions 0.6 dated 2020-10-18 and 0.7 dated 2021-08-05
DESCRIPTION | 10 MD5 | 24 - NAMESPACE | 4 NEWS | 8 R/illustrateBoxplot.R |only R/illustrateQuantile.R |only build/vignette.rds |binary inst/CITATION | 2 inst/doc/MKdescr.R | 15 inst/doc/MKdescr.Rmd | 24 + inst/doc/MKdescr.html | 778 ++++++++++++++++++++++++++++------------------ man/0MKdescr-package.Rd | 8 man/illustrateBoxplot.Rd |only man/illustrateQuantile.Rd |only vignettes/MKdescr.Rmd | 24 + 15 files changed, 576 insertions(+), 321 deletions(-)
Title: Manipulate MCMC Samples
Description: Functions and classes to store, manipulate and summarise
Monte Carlo Markov Chain (MCMC) samples. For more information see
Brooks et al. (2011) <isbn:978-1-4200-7941-8>.
Author: Joe Thorley [aut, cre] (<https://orcid.org/0000-0002-7683-4592>),
Poisson Consulting [cph, fnd]
Maintainer: Joe Thorley <joe@poissonconsulting.ca>
Diff between mcmcr versions 0.5.0 dated 2021-02-11 and 0.6.0 dated 2021-08-05
DESCRIPTION | 16 +-- MD5 | 183 +++++++++++++++++++------------------ NAMESPACE | 5 + NEWS.md | 7 + R/as-mcarray.R | 3 R/as-mcmcarray.R | 9 + R/as-mcmcr.R | 6 - R/as-mcmcrs.R | 2 R/as-nlists.R | 5 - R/bind-dimensions-n.R | 4 R/bind-dimensions.R | 6 - R/bind-parameters.R | 5 - R/check.R | 11 -- R/chk.R | 5 - R/coef.R | 10 -- R/combine-dimensions.R | 5 - R/combine-samples-n.R | 3 R/combine-samples.R | 6 - R/data.R | 4 R/fill_na.R |only R/is.R | 12 +- R/mcmc-aperm.R | 6 - R/mcmc-map.R | 3 R/mcmcarray-object.R | 2 R/mcmcr-object.R | 2 R/mcmcrs-object.R | 2 R/mcmcrs.R | 1 R/namespace.R | 1 R/params.R | 15 ++- R/subset.R | 3 R/utils.R | 7 - R/vld.R | 2 R/zero.R | 5 - build/mcmcr.pdf |binary man/as.mcarray.Rd | 7 + man/as.mcmcarray.Rd | 7 + man/as.mcmcr.Rd | 9 + man/as_nlist.mcmcr.Rd | 4 man/as_nlists.mcmcr.Rd | 4 man/bind_dimensions.Rd | 7 + man/bind_dimensions_n.Rd | 7 + man/bind_parameters.Rd | 12 ++ man/check_mcmcarray.Rd | 3 man/check_mcmcr.Rd | 3 man/chk_mcmcr.Rd | 2 man/coef.Rd | 6 - man/combine_dimensions.Rd | 10 +- man/combine_samples.Rd | 10 +- man/combine_samples_n.Rd | 8 + man/converged.default.Rd | 2 man/converged.mcmcrs.Rd | 2 man/esr.mcarray.Rd | 2 man/esr.mcmc.Rd | 2 man/esr.mcmc.list.Rd | 2 man/esr.mcmcarray.Rd | 2 man/esr.mcmcr.Rd | 2 man/esr.mcmcrs.Rd | 2 man/ess.Rd | 10 +- man/estimates.mcarray.Rd | 2 man/estimates.mcmc.Rd | 2 man/estimates.mcmc.list.Rd | 2 man/estimates.mcmcarray.Rd | 2 man/estimates.mcmcr.Rd | 2 man/fill_all.mcarray.Rd | 4 man/fill_all.mcmcarray.Rd | 4 man/fill_all.mcmcr.Rd | 4 man/fill_na.mcarray.Rd |only man/fill_na.mcmcarray.Rd |only man/fill_na.mcmcr.Rd |only man/is.mcarray.Rd | 9 + man/is.mcmcarray.Rd | 9 + man/is.mcmcr.Rd | 9 + man/is.mcmcrs.Rd | 9 + man/mcmc_aperm.Rd | 15 ++- man/mcmc_map.Rd | 7 + man/mcmcarray-object.Rd | 6 + man/mcmcr-object.Rd | 6 + man/mcmcr-package.Rd | 6 - man/mcmcr_example.Rd | 4 man/mcmcrs-object.Rd | 6 + man/mcmcrs.Rd | 7 + man/params.Rd | 28 +++++ man/reexports.Rd | 9 + man/rhat.mcarray.Rd | 2 man/rhat.mcmc.Rd | 2 man/rhat.mcmc.list.Rd | 2 man/rhat.mcmcarray.Rd | 2 man/rhat.mcmcr.Rd | 2 man/rhat.mcmcrs.Rd | 2 man/subset.Rd | 5 - man/vld_mcmcr.Rd | 2 man/zero.Rd | 4 tests/testthat/test-as-mcmcarray.R | 7 + tests/testthat/test-as-mcmcr.R | 4 tests/testthat/test-fill-na.R |only 95 files changed, 448 insertions(+), 219 deletions(-)
Title: Less Code, More Results
Description: Each function accomplishes the work of several or more standard R functions. For example, two function calls, Read() and CountAll(), read the data and generate summary statistics for all variables in the data frame, plus histograms and bar charts as appropriate. Other functions provide for descriptive statistics, a comprehensive regression analysis, analysis of variance and t-test, plotting including the introduced here Violin/Box/Scatter plot for a numerical variable, bar chart, histogram, box plot, density curves, calibrated power curve, reading multiple data formats with the same function call, variable labels, color themes, Trellis graphics and a built-in help system. Also includes a confirmatory factor analysis of multiple indicator measurement models, pedagogical routines for data simulation such as for the Central Limit Theorem, and generation and rendering of R markdown instructions for interpretative output.
Author: David Gerbing, The School of Business, Portland State University
Maintainer: David W. Gerbing <gerbing@pdx.edu>
Diff between lessR versions 4.0.1 dated 2021-06-06 and 4.0.2 dated 2021-08-05
lessR-4.0.1/lessR/R/scales.R |only lessR-4.0.2/lessR/DESCRIPTION | 8 lessR-4.0.2/lessR/MD5 | 114 - lessR-4.0.2/lessR/NEWS | 32 lessR-4.0.2/lessR/R/BarChart.R | 13 lessR-4.0.2/lessR/R/Histogram.R | 50 lessR-4.0.2/lessR/R/Plot.R | 2 lessR-4.0.2/lessR/R/bc.data.frame.R | 6 lessR-4.0.2/lessR/R/bc.zmain.R | 2364 ++++++++++++------------- lessR-4.0.2/lessR/R/d.R |only lessR-4.0.2/lessR/R/pivot.R | 5 lessR-4.0.2/lessR/R/plt.by.zlegend.R | 13 lessR-4.0.2/lessR/R/ss.zfactor.R | 1 lessR-4.0.2/lessR/R/zzz.R | 10 lessR-4.0.2/lessR/inst/doc/BarChart.R | 4 lessR-4.0.2/lessR/inst/doc/BarChart.Rmd | 4 lessR-4.0.2/lessR/inst/doc/BarChart.html | 92 lessR-4.0.2/lessR/inst/doc/Customize.R | 4 lessR-4.0.2/lessR/inst/doc/Customize.Rmd | 5 lessR-4.0.2/lessR/inst/doc/Customize.html | 5 lessR-4.0.2/lessR/inst/doc/Extract.R | 4 lessR-4.0.2/lessR/inst/doc/Extract.Rmd | 4 lessR-4.0.2/lessR/inst/doc/Extract.html | 49 lessR-4.0.2/lessR/inst/doc/FactorAnalysis.R | 4 lessR-4.0.2/lessR/inst/doc/FactorAnalysis.Rmd | 6 lessR-4.0.2/lessR/inst/doc/FactorAnalysis.html | 41 lessR-4.0.2/lessR/inst/doc/Histogram.R | 4 lessR-4.0.2/lessR/inst/doc/Histogram.Rmd | 5 lessR-4.0.2/lessR/inst/doc/Histogram.html | 17 lessR-4.0.2/lessR/inst/doc/Means.R | 4 lessR-4.0.2/lessR/inst/doc/Means.Rmd | 6 lessR-4.0.2/lessR/inst/doc/Means.html | 75 lessR-4.0.2/lessR/inst/doc/Plot.R | 4 lessR-4.0.2/lessR/inst/doc/Plot.Rmd | 6 lessR-4.0.2/lessR/inst/doc/Plot.html | 127 - lessR-4.0.2/lessR/inst/doc/Proportions.R | 38 lessR-4.0.2/lessR/inst/doc/Proportions.Rmd | 144 - lessR-4.0.2/lessR/inst/doc/Proportions.html | 319 +-- lessR-4.0.2/lessR/inst/doc/ReadWrite.R | 4 lessR-4.0.2/lessR/inst/doc/ReadWrite.Rmd | 6 lessR-4.0.2/lessR/inst/doc/ReadWrite.html | 5 lessR-4.0.2/lessR/inst/doc/Regression.html | 18 lessR-4.0.2/lessR/inst/doc/pivot.R | 2 lessR-4.0.2/lessR/inst/doc/pivot.Rmd | 10 lessR-4.0.2/lessR/inst/doc/pivot.html | 10 lessR-4.0.2/lessR/inst/doc/utilities.html | 18 lessR-4.0.2/lessR/inst/img/pivot.png |binary lessR-4.0.2/lessR/man/BarChart.Rd | 24 lessR-4.0.2/lessR/man/Prop_test.Rd | 33 lessR-4.0.2/lessR/vignettes/BarChart.Rmd | 4 lessR-4.0.2/lessR/vignettes/Customize.Rmd | 5 lessR-4.0.2/lessR/vignettes/Extract.Rmd | 4 lessR-4.0.2/lessR/vignettes/FactorAnalysis.Rmd | 6 lessR-4.0.2/lessR/vignettes/Histogram.Rmd | 5 lessR-4.0.2/lessR/vignettes/Means.Rmd | 6 lessR-4.0.2/lessR/vignettes/Plot.Rmd | 6 lessR-4.0.2/lessR/vignettes/Proportions.Rmd | 144 - lessR-4.0.2/lessR/vignettes/ReadWrite.Rmd | 6 lessR-4.0.2/lessR/vignettes/pivot.Rmd | 10 59 files changed, 2031 insertions(+), 1884 deletions(-)
Title: Genome-Wide Structural Equation Modeling
Description: Melds genome-wide association tests with structural
equation modeling (SEM) using 'OpenMx'. This package contains
low-level C/C++ code to rapidly read genetic data encoded in U.K.
Biobank or 'plink' formats. Prebuilt modeling options include one and
two factor models. Alternately, analyses may utilize arbitrary,
user-provided SEMs. See Verhulst, Maes, & Neale (2017)
<doi:10.1007/s10519-017-9842-6> for details. An updated manuscript is
in preparation.
Author: Joshua N. Pritikin [aut, cre],
Bradley Verhulst [cph],
Gavin Band [cph],
Yann Collet [cph],
Facebook, Inc. [cph],
Yuta Mori [cph],
Shaun Purcell [cph],
Christopher Chang [cph],
Wojciech Mula [cph],
Kim Walisch [cph]
Maintainer: Joshua N. Pritikin <jpritikin@pobox.com>
Diff between gwsem versions 2.1.0 dated 2021-03-11 and 2.1.1 dated 2021-08-05
DESCRIPTION | 9 ++++----- MD5 | 27 +++++++++++++++++---------- R/model.R | 7 ++++--- R/report.R | 4 +++- README.md | 2 +- build/gwsem.pdf |binary inst/extdata/README | 5 +++++ inst/extdata/group1.bed |only inst/extdata/group1.bim |only inst/extdata/group1.fam |only inst/extdata/group2.bed |only inst/extdata/group2.bim |only inst/extdata/group2.fam |only man/signifGxE.Rd | 2 +- src/include/genfile/bgen/View.hpp | 18 +++++------------- tests/testthat/test-formats.R | 5 ++++- tests/testthat/test-multigroup.R |only tools/travis/script | 4 ++-- 18 files changed, 46 insertions(+), 37 deletions(-)
Title: Class and Methods for Spectral Data
Description: Input/Output, processing and visualization of spectra taken with different spectrometers, including SVC (Spectra Vista), ASD and PSR (Spectral Evolution). Implements an S3 class 'spectra' that other packages can build on. Provides methods to access, plot, manipulate, splice sensor overlap, vector normalize and smooth spectra.
Author: Jose Eduardo Meireles [aut, cre],
Anna K. Schweiger [aut],
Jeannine Cavender-Bares [aut]
Maintainer: Jose Eduardo Meireles <jemeireles@gmail.com>
Diff between spectrolab versions 0.0.12 dated 2021-06-01 and 0.0.13 dated 2021-08-05
DESCRIPTION | 10 MD5 | 26 - NAMESPACE | 2 NEWS.md | 6 R/graveyard.R | 152 +++----- R/read_spectra.R | 442 ++++++++++++++---------- inst/doc/introduction_to_spectrolab.pdf |binary inst/doc/match_sensors.pdf |binary man/i_index_pairwise_combn.Rd |only man/i_read_ascii_metadata.Rd |only man/i_read_ascii_spectra.Rd | 4 man/i_read_asd_spectra.Rd | 9 man/i_verify_path_and_format.Rd |only man/pairwise_ratio.Rd |only man/read_spectra.Rd | 23 - tests/testthat/test_parser_tag_identification.R | 4 16 files changed, 384 insertions(+), 294 deletions(-)
Title: Create and (Interactively) Modify Nested Hierarchies
Description: Provides functionality to generate, (interactively) modify (by adding, removing and renaming nodes) and convert nested hierarchies between different formats.
These tree like structures can be used to define for example complex hierarchical tables used for statistical disclosure control.
Author: Bernhard Meindl [aut, cre]
Maintainer: Bernhard Meindl <Bernhard.Meindl@statistik.gv.at>
Diff between sdcHierarchies versions 0.19.0 dated 2021-07-20 and 0.19.1 dated 2021-08-05
DESCRIPTION | 8 +- MD5 | 27 ++++---- NAMESPACE | 1 NEWS.md | 5 + R/hier_codes.R |only R/hier_compute.R | 22 ++++-- R/hier_convert.R | 105 +++++++++++++++++++++++--------- R/hier_display.R | 6 - R/hier_grid.R | 3 R/hier_helpers.R | 49 --------------- inst/doc/usage.html | 114 +++++++++++++++++------------------ man/hier_codes.Rd |only tests/testthat/test-hier_codes.R |only tests/testthat/test_additional.R | 14 ++++ tests/testthat/test_hier_grid.R | 3 tests/testthat/test_import_compute.R | 4 - 16 files changed, 198 insertions(+), 163 deletions(-)
More information about sdcHierarchies at CRAN
Permanent link
Title: Fit and Compare Species-Area Relationship Models Using
Multimodel Inference
Description: Implements the basic elements of the multi-model
inference paradigm for up to twenty species-area relationship models (SAR), using simple
R list-objects and functions, as in Triantis et al. 2012 <DOI:10.1111/j.1365-2699.2011.02652.x>.
The package is scalable and users can easily create their own model and data objects. Additional
SAR related functions are provided.
Author: Thomas J. Matthews [aut, cre] (<https://orcid.org/0000-0002-7624-244X>),
Francois Guilhaumon [aut] (<https://orcid.org/0000-0003-4707-8932>),
Kevin Cazelles [rev] (<https://orcid.org/0000-0001-6619-9874>)
Maintainer: Thomas J. Matthews <txm676@gmail.com>
Diff between sars versions 1.3.4 dated 2021-05-23 and 1.3.5 dated 2021-08-05
DESCRIPTION | 6 MD5 | 22 - NAMESPACE | 1 NEWS.md | 6 R/class_plot.R | 116 +++++- R/optim.R | 28 + README.md | 85 +++- build/vignette.rds |binary inst/doc/sars-r-package.html | 535 ++++++++++--------------------- man/figures/README-unnamed-chunk-5-1.png |binary man/plot.threshold.Rd | 13 tests/testthat/test_logistic.R | 2 12 files changed, 392 insertions(+), 422 deletions(-)
Title: Machine Learning in R - Next Generation
Description: Efficient, object-oriented programming on the
building blocks of machine learning. Provides 'R6' objects for tasks,
learners, resamplings, and measures. The package is geared towards
scalability and larger datasets by supporting parallelization and
out-of-memory data-backends like databases. While 'mlr3' focuses on
the core computational operations, add-on packages provide additional
functionality.
Author: Michel Lang [cre, aut] (<https://orcid.org/0000-0001-9754-0393>),
Bernd Bischl [aut] (<https://orcid.org/0000-0001-6002-6980>),
Jakob Richter [aut] (<https://orcid.org/0000-0003-4481-5554>),
Patrick Schratz [aut] (<https://orcid.org/0000-0003-0748-6624>),
Giuseppe Casalicchio [ctb] (<https://orcid.org/0000-0001-5324-5966>),
Stefan Coors [ctb] (<https://orcid.org/0000-0002-7465-2146>),
Quay Au [ctb] (<https://orcid.org/0000-0002-5252-8902>),
Martin Binder [aut],
Marc Becker [ctb] (<https://orcid.org/0000-0002-8115-0400>)
Maintainer: Michel Lang <michellang@gmail.com>
Diff between mlr3 versions 0.11.0 dated 2021-03-05 and 0.12.0 dated 2021-08-05
DESCRIPTION | 37 +- MD5 | 360 +++++++++++------------ NAMESPACE | 11 NEWS.md | 36 ++ R/BenchmarkResult.R | 90 +++-- R/DataBackend.R | 4 R/DataBackendCbind.R | 6 R/DataBackendDataTable.R | 33 +- R/DataBackendMatrix.R | 20 - R/DataBackendRbind.R | 2 R/DataBackendRename.R | 2 R/Learner.R | 76 ++++ R/LearnerClassif.R | 4 R/LearnerClassifDebug.R | 48 +-- R/LearnerClassifFeatureless.R | 4 R/LearnerClassifRpart.R | 24 - R/LearnerRegr.R | 4 R/LearnerRegrFeatureless.R | 6 R/LearnerRegrRpart.R | 24 - R/Measure.R | 28 + R/MeasureAIC.R |only R/MeasureBIC.R |only R/MeasureClassif.R | 10 R/MeasureClassifCosts.R | 27 + R/MeasureDebug.R | 22 - R/MeasureElapsedTime.R | 5 R/MeasureOOBError.R | 4 R/MeasureRegr.R | 10 R/MeasureSelectedFeatures.R | 36 +- R/MeasureSimple.R | 35 +- R/Prediction.R | 2 R/PredictionClassif.R | 2 R/PredictionDataClassif.R | 24 + R/PredictionDataRegr.R | 11 R/PredictionRegr.R | 2 R/ResampleResult.R | 90 +++-- R/Resampling.R | 8 R/ResamplingBootstrap.R | 20 - R/ResamplingCV.R | 20 - R/ResamplingCustom.R | 19 - R/ResamplingCustomCV.R |only R/ResamplingHoldout.R | 23 - R/ResamplingInsample.R | 10 R/ResamplingLOO.R | 24 + R/ResamplingRepeatedCV.R | 34 +- R/ResamplingSubsampling.R | 22 - R/ResultData.R | 14 R/Task.R | 107 ++++-- R/TaskClassif.R | 18 - R/TaskClassif_penguins.R | 2 R/TaskGenerator.R | 4 R/TaskGenerator2DNormals.R | 10 R/TaskGeneratorCassini.R | 10 R/TaskGeneratorCircle.R | 7 R/TaskGeneratorFriedman1.R | 6 R/TaskGeneratorMoons.R | 8 R/TaskGeneratorSimplex.R | 12 R/TaskGeneratorSmiley.R | 8 R/TaskGeneratorSpirals.R | 8 R/TaskGeneratorXor.R | 6 R/TaskRegr.R | 9 R/TaskSupervised.R | 4 R/TaskUnsupervised.R | 2 R/as_benchmark_result.R | 7 R/as_data_backend.R | 3 R/as_prediction_data.R | 3 R/assertions.R | 84 ++++- R/auto_convert.R | 57 ++- R/benchmark.R | 34 +- R/benchmark_grid.R | 21 + R/bibentries.R | 18 - R/default_measures.R | 5 R/helper.R | 59 ++- R/mlr_reflections.R | 4 R/mlr_resamplings.R | 3 R/partition.R |only R/resample.R | 28 - R/set_threads.R | 10 R/task_converters.R | 2 R/worker.R | 7 R/zzz.R | 3 README.md | 27 + build/partial.rdb |binary inst/testthat/helper_autotest.R | 27 + inst/testthat/helper_expectations.R | 87 +++-- inst/testthat/helper_misc.R | 8 man/BenchmarkResult.Rd | 32 +- man/DataBackend.Rd | 6 man/DataBackendDataTable.Rd | 6 man/DataBackendMatrix.Rd | 6 man/Learner.Rd | 60 +++ man/LearnerClassif.Rd | 17 + man/LearnerRegr.Rd | 17 + man/Measure.Rd | 24 + man/MeasureClassif.Rd | 20 + man/MeasureRegr.Rd | 20 + man/Prediction.Rd | 11 man/PredictionClassif.Rd | 11 man/PredictionRegr.Rd | 11 man/ResampleResult.Rd | 25 - man/Resampling.Rd | 24 - man/Task.Rd | 79 ++++- man/TaskClassif.Rd | 25 + man/TaskGenerator.Rd | 12 man/TaskRegr.Rd | 23 + man/TaskSupervised.Rd | 18 + man/TaskUnsupervised.Rd | 16 + man/as_data_backend.Rd | 6 man/benchmark.Rd | 38 ++ man/benchmark_grid.Rd | 28 + man/default_measures.Rd | 2 man/mlr3-package.Rd | 2 man/mlr_assertions.Rd | 3 man/mlr_learners_classif.debug.Rd | 35 +- man/mlr_learners_classif.featureless.Rd | 17 - man/mlr_learners_classif.rpart.Rd | 27 + man/mlr_learners_regr.featureless.Rd | 17 - man/mlr_learners_regr.rpart.Rd | 27 + man/mlr_measures.Rd | 2 man/mlr_measures_aic.Rd |only man/mlr_measures_bic.Rd |only man/mlr_measures_classif.costs.Rd | 36 +- man/mlr_measures_debug.Rd | 37 +- man/mlr_measures_elapsed_time.Rd | 18 - man/mlr_measures_oob_error.Rd | 15 man/mlr_measures_selected_features.Rd | 53 ++- man/mlr_resamplings.Rd | 1 man/mlr_resamplings_bootstrap.Rd | 25 + man/mlr_resamplings_custom.Rd | 22 - man/mlr_resamplings_custom_cv.Rd |only man/mlr_resamplings_cv.Rd | 25 + man/mlr_resamplings_holdout.Rd | 25 + man/mlr_resamplings_insample.Rd | 21 - man/mlr_resamplings_loo.Rd | 35 +- man/mlr_resamplings_repeated_cv.Rd | 31 + man/mlr_resamplings_subsampling.Rd | 25 + man/mlr_task_generators_2dnormals.Rd | 12 man/mlr_task_generators_cassini.Rd | 12 man/mlr_task_generators_circle.Rd | 12 man/mlr_task_generators_friedman1.Rd | 12 man/mlr_task_generators_moons.Rd | 12 man/mlr_task_generators_simplex.Rd | 12 man/mlr_task_generators_smiley.Rd | 12 man/mlr_task_generators_spirals.Rd | 12 man/mlr_task_generators_xor.Rd | 12 man/mlr_tasks_boston_housing.Rd | 17 - man/mlr_tasks_breast_cancer.Rd | 17 - man/mlr_tasks_german_credit.Rd | 17 - man/mlr_tasks_iris.Rd | 17 - man/mlr_tasks_mtcars.Rd | 17 - man/mlr_tasks_penguins.Rd | 17 - man/mlr_tasks_pima.Rd | 17 - man/mlr_tasks_sonar.Rd | 17 - man/mlr_tasks_spam.Rd | 17 - man/mlr_tasks_wine.Rd | 17 - man/mlr_tasks_zoo.Rd | 17 - man/partition.Rd |only man/resample.Rd | 31 + man/set_threads.Rd | 4 tests/testthat/test_Learner.R | 10 tests/testthat/test_Measure.R | 23 + tests/testthat/test_MeasureClassif.R | 2 tests/testthat/test_MeasureRegr.R | 2 tests/testthat/test_PredictionClassif.R | 6 tests/testthat/test_PredictionDataClassif.R | 6 tests/testthat/test_PredictionRegr.R | 4 tests/testthat/test_Resampling.R | 48 ++- tests/testthat/test_Task.R | 75 +++- tests/testthat/test_TaskClassif.R | 8 tests/testthat/test_TaskRegr.R | 19 + tests/testthat/test_benchmark.R | 57 +-- tests/testthat/test_convert_task.R | 36 +- tests/testthat/test_encapsulate.R | 4 tests/testthat/test_expectations.R |only tests/testthat/test_hashes.R | 4 tests/testthat/test_mlr_learners_classif_debug.R | 4 tests/testthat/test_mlr_resampling_custom.R | 31 + tests/testthat/test_mlr_resampling_holdout.R | 2 tests/testthat/test_mlr_resampling_repeated_cv.R | 3 tests/testthat/test_mlr_resamplings.R | 2 tests/testthat/test_mlr_tasks.R | 9 tests/testthat/test_parallel.R | 40 ++ tests/testthat/test_partition.R |only tests/testthat/test_predict.R | 46 ++ tests/testthat/test_resample.R | 44 +- tests/testthat/test_resultdata.R | 6 186 files changed, 2676 insertions(+), 1192 deletions(-)
Title: Access to the 'Gitlab' API
Description: Provides R functions to access the API of the project and
repository management web application 'GitLab'. For many common tasks
(repository file access, issue assignment and status, commenting)
convenience wrappers are provided, and in addition the full API can be
used by specifying request locations. 'GitLab' is open-source software
and can be self-hosted or used on <https://about.gitlab.com>.
Author: Jirka Lewandowski [aut],
Sébastien Rochette [aut, cre] (<https://orcid.org/0000-0002-1565-9313>)
Maintainer: Sébastien Rochette <sebastien@thinkr.fr>
Diff between gitlabr versions 1.1.6 dated 2019-03-15 and 2.0.0 dated 2021-08-05
gitlabr-1.1.6/gitlabr/R/update_code.R |only gitlabr-1.1.6/gitlabr/inst/doc/quick-start-gitlabr.pdf |only gitlabr-1.1.6/gitlabr/inst/doc/quick-start-gitlabr.pdf.asis |only gitlabr-1.1.6/gitlabr/inst/doc_save |only gitlabr-1.1.6/gitlabr/man/gitlabr.Rd |only gitlabr-1.1.6/gitlabr/man/gl_edit_issue.Rd |only gitlabr-1.1.6/gitlabr/man/gl_push_file.Rd |only gitlabr-1.1.6/gitlabr/man/update_gitlabr_code.Rd |only gitlabr-1.1.6/gitlabr/vignettes/quick-start-gitlabr.Rmd |only gitlabr-1.1.6/gitlabr/vignettes/quick-start-gitlabr.pdf.asis |only gitlabr-2.0.0/gitlabr/DESCRIPTION | 54 - gitlabr-2.0.0/gitlabr/MD5 | 132 ++- gitlabr-2.0.0/gitlabr/NAMESPACE | 27 gitlabr-2.0.0/gitlabr/NEWS.md | 39 + gitlabr-2.0.0/gitlabr/R/branches.R |only gitlabr-2.0.0/gitlabr/R/ci.R | 228 ++---- gitlabr-2.0.0/gitlabr/R/comments.R | 76 +- gitlabr-2.0.0/gitlabr/R/connect.R | 58 + gitlabr-2.0.0/gitlabr/R/files.R |only gitlabr-2.0.0/gitlabr/R/gitlab_api.R | 147 +++- gitlabr-2.0.0/gitlabr/R/gitlabr-package.R | 34 gitlabr-2.0.0/gitlabr/R/global_env.R | 42 - gitlabr-2.0.0/gitlabr/R/globals.R |only gitlabr-2.0.0/gitlabr/R/issues.R | 168 +++- gitlabr-2.0.0/gitlabr/R/legacy_headers.R | 76 +- gitlabr-2.0.0/gitlabr/R/magrittr_extensions.R | 9 gitlabr-2.0.0/gitlabr/R/merge_requests.R |only gitlabr-2.0.0/gitlabr/R/projects_and_repos.R | 341 +++------- gitlabr-2.0.0/gitlabr/R/shiny_module_login.R | 33 gitlabr-2.0.0/gitlabr/R/utils-pipe.R |only gitlabr-2.0.0/gitlabr/README.md | 300 +++++++- gitlabr-2.0.0/gitlabr/build/vignette.rds |binary gitlabr-2.0.0/gitlabr/inst/doc/a-quick-start-guide-to-gitlabr.R |only gitlabr-2.0.0/gitlabr/inst/doc/a-quick-start-guide-to-gitlabr.Rmd |only gitlabr-2.0.0/gitlabr/inst/doc/a-quick-start-guide-to-gitlabr.html |only gitlabr-2.0.0/gitlabr/inst/doc/b-projects.R |only gitlabr-2.0.0/gitlabr/inst/doc/b-projects.Rmd |only gitlabr-2.0.0/gitlabr/inst/doc/b-projects.html |only gitlabr-2.0.0/gitlabr/inst/doc/c-alternative-connection-to-projects.R |only gitlabr-2.0.0/gitlabr/inst/doc/c-alternative-connection-to-projects.Rmd |only gitlabr-2.0.0/gitlabr/inst/doc/c-alternative-connection-to-projects.html |only gitlabr-2.0.0/gitlabr/inst/doc/d-go-further-understand-and-build.R |only gitlabr-2.0.0/gitlabr/inst/doc/d-go-further-understand-and-build.Rmd |only gitlabr-2.0.0/gitlabr/inst/doc/d-go-further-understand-and-build.html |only gitlabr-2.0.0/gitlabr/inst/doc/z-gitlabr-v2.R |only gitlabr-2.0.0/gitlabr/inst/doc/z-gitlabr-v2.Rmd |only gitlabr-2.0.0/gitlabr/inst/doc/z-gitlabr-v2.html |only gitlabr-2.0.0/gitlabr/inst/gitlab-ci |only gitlabr-2.0.0/gitlabr/man/branches.Rd | 45 - gitlabr-2.0.0/gitlabr/man/figures |only gitlabr-2.0.0/gitlabr/man/gitlab.Rd | 87 +- gitlabr-2.0.0/gitlabr/man/gitlabci.Rd | 55 - gitlabr-2.0.0/gitlabr/man/gitlabr-deprecated.Rd | 71 +- gitlabr-2.0.0/gitlabr/man/gitlabr-package.Rd |only gitlabr-2.0.0/gitlabr/man/gitlabr_0_7_renaming.Rd | 9 gitlabr-2.0.0/gitlabr/man/gitlabr_options_set.Rd |only gitlabr-2.0.0/gitlabr/man/gl_archive.Rd | 18 gitlabr-2.0.0/gitlabr/man/gl_builds.Rd | 36 - gitlabr-2.0.0/gitlabr/man/gl_comments.Rd | 54 + gitlabr-2.0.0/gitlabr/man/gl_connection.Rd | 65 + gitlabr-2.0.0/gitlabr/man/gl_create_merge_request.Rd | 57 + gitlabr-2.0.0/gitlabr/man/gl_get_commits.Rd | 13 gitlabr-2.0.0/gitlabr/man/gl_get_project_id.Rd | 23 gitlabr-2.0.0/gitlabr/man/gl_list_issues.Rd | 45 - gitlabr-2.0.0/gitlabr/man/gl_list_projects.Rd | 35 - gitlabr-2.0.0/gitlabr/man/gl_new_issue.Rd |only gitlabr-2.0.0/gitlabr/man/gl_new_project.Rd |only gitlabr-2.0.0/gitlabr/man/gl_proj_req.Rd | 10 gitlabr-2.0.0/gitlabr/man/gl_repository.Rd | 58 + gitlabr-2.0.0/gitlabr/man/gl_shiny_login.Rd | 34 gitlabr-2.0.0/gitlabr/man/gl_to_issue_id.Rd | 25 gitlabr-2.0.0/gitlabr/man/onefile.Rd |only gitlabr-2.0.0/gitlabr/man/pipe.Rd |only gitlabr-2.0.0/gitlabr/man/set_gitlab_connection.Rd | 20 gitlabr-2.0.0/gitlabr/man/use_gitlab_ci.Rd |only gitlabr-2.0.0/gitlabr/tests |only gitlabr-2.0.0/gitlabr/vignettes/a-quick-start-guide-to-gitlabr.Rmd |only gitlabr-2.0.0/gitlabr/vignettes/b-projects.Rmd |only gitlabr-2.0.0/gitlabr/vignettes/c-alternative-connection-to-projects.Rmd |only gitlabr-2.0.0/gitlabr/vignettes/d-go-further-understand-and-build.Rmd |only gitlabr-2.0.0/gitlabr/vignettes/z-gitlabr-v2.Rmd |only 81 files changed, 1569 insertions(+), 955 deletions(-)
Title: Projected Refinement for Imputation of Missing Entries in PCA
Description: Implements the primePCA algorithm, developed and analysed in Zhu, Z., Wang, T. and Samworth, R. J. (2019) High-dimensional principal component analysis with heterogeneous missingness. <arXiv:1906.12125>.
Author: Ziwei Zhu, Tengyao Wang, Richard J. Samworth
Maintainer: Ziwei Zhu <ziweiz@umich.edu>
Diff between primePCA versions 1.1 dated 2021-05-31 and 1.2 dated 2021-08-05
DESCRIPTION | 10 +++++----- MD5 | 4 ++-- R/code_full_new.R | 2 +- 3 files changed, 8 insertions(+), 8 deletions(-)
Title: Mixed-Effect Models, Particularly Spatial Models
Description: Inference based on mixed-effect models, including generalized linear mixed models with spatial correlations, multivariate responses, and models with non-Gaussian random effects (e.g., Beta). Various approximations of likelihood or restricted likelihood are implemented, in particular Laplace approximation and h-likelihood (Lee and Nelder 2001 <doi:10.1093/biomet/88.4.987>). Both classical geostatistical models, and Markov random field models on irregular grids (as considered in the 'INLA' package, <https://www.r-inla.org>), can be fitted. Variation in residual variance (heteroscedasticity) can itself be represented by a mixed-effect model.
Author: François Rousset [aut, cre, cph]
(<https://orcid.org/0000-0003-4670-0371>),
Jean-Baptiste Ferdy [aut, cph],
Alexandre Courtiol [aut] (<https://orcid.org/0000-0003-0637-2959>),
GSL authors [ctb] (src/gsl_bessel.*)
Maintainer: François Rousset <francois.rousset@umontpellier.fr>
Diff between spaMM versions 3.8.9 dated 2021-06-28 and 3.8.23 dated 2021-08-05
DESCRIPTION | 8 - MD5 | 109 +++++++-------- NAMESPACE | 5 R/COMPoisson.R | 169 ++++++++++++++---------- R/GLM.fit.R | 1 R/HLCor.R | 5 R/HLfit.R | 1 R/HLfit_Internals.R | 18 +- R/HLfit_b_internals.R | 2 R/HLframes.R | 92 +++++++------ R/IRLS_internals.R | 2 R/RcppExports.R | 8 + R/corrHLfit.R | 1 R/corrMM.LRT.R | 4 R/correlationFns.R | 23 --- R/determine_spprec.R | 42 ++++- R/fit_as_ZX.R | 10 - R/fit_as_sparsePrecision.R | 3 R/fitme.R | 4 R/geo_info.R | 7 R/get_inits_by_glm.R | 9 - R/glm.nodev.fit.R |only R/postfit_internals.R | 2 R/predict.R | 23 ++- R/preprocess.R | 35 +++- R/preprocess_MV.R | 5 R/preprocess_internals.R | 105 +++++++++----- R/profile.R | 21 ++ R/separator.R | 6 R/spaMM.data.R | 20 +- R/summary.HL.R | 1 R/utils.R | 2 build/partial.rdb |binary data/Gryphon.RData |only inst/NEWS.Rd | 31 ++++ man/Gryphon.Rd |only man/HLCor.Rd | 5 man/HLfit.Rd | 3 man/pedigree.Rd | 4 man/spaMM-internal.Rd | 5 man/sparse_precision.Rd | 23 ++- man/summary.HL.Rd | 2 man/update.Rd | 4 man/welding.Rd | 4 src/COMPoisson.cpp | 55 +++++++ src/Makevars.win | 3 src/RcppExports.cpp | 35 ++++ tests/test-all.R | 6 tests/testthat/test-AR1.R | 22 +-- tests/testthat/test-CAR.R | 2 tests/testthat/test-COMPoisson.R | 13 + tests/testthat/test-LRT-boot.R | 6 tests/testthat/test-Rasch.R | 7 tests/testthat/test-adjacency-corrMatrix.R | 10 - tests/testthat/test-adjacency-long.R | 6 tests/testthat/test-predVar-Matern-corrMatrix.R | 9 - tests/testthat/test-predVar.R | 7 57 files changed, 642 insertions(+), 363 deletions(-)
Title: R API Datetime
Description: Access to the C-level R date and datetime code is provided for
C-level API use by other packages via registration of native functions.
Client packages simply include a single header 'RApiDatetime.h' provided
by this package, and also 'import' it. The R Core group is the original
author of the code made available with slight modifications by this package.
Author: Dirk Eddelbuettel
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RApiDatetime versions 0.0.4 dated 2018-10-21 and 0.0.5 dated 2021-08-05
ChangeLog | 45 ++++++++++++++++++ DESCRIPTION | 11 ++-- MD5 | 17 +++---- R/asDatePOSIXct.R | 2 R/datetime.R | 12 ++--- README.md | 11 +++- inst/NEWS.Rd | 12 +++++ src/Makevars.win |only src/Rstrptime.h | 100 +++++++++++++++++++++++++++-------------- src/datetime.c | 129 ++++++++++++++++++++++++++++++------------------------ 10 files changed, 228 insertions(+), 111 deletions(-)
Title: Tools for General Maximum Likelihood Estimation
Description: Methods and functions for fitting maximum likelihood models in R. This package modifies and extends the 'mle' classes in the 'stats4' package.
Author: Ben Bolker [aut, cre],
R Development Core Team [aut],
Iago Giné-Vázquez [ctb]
Maintainer: Ben Bolker <bolker@mcmaster.ca>
Diff between bbmle versions 1.0.23.1 dated 2020-02-03 and 1.0.24 dated 2021-08-05
DESCRIPTION | 16 +++++++--------- MD5 | 33 +++++++++++++++++---------------- R/TMB.R |only R/impsamp.R | 29 ++++++++++++++++------------- R/mle.R | 19 +++++++++++++------ R/slice.R | 6 ++++-- build/vignette.rds |binary inst/NEWS.Rd | 13 +++++++++++-- inst/doc/mle2.R | 35 ++++++----------------------------- inst/doc/mle2.Rnw | 8 ++++++-- inst/doc/mle2.pdf |binary inst/doc/quasi.pdf |binary man/mle2.Rd | 7 +++++-- man/pop_pred_samp.Rd | 22 ++++++++++++++++++---- man/slice.Rd | 8 ++++++-- tests/profbound.R | 2 +- tests/profbound.Rout.save | 4 ++-- vignettes/mle2.Rnw | 8 ++++++-- 18 files changed, 118 insertions(+), 92 deletions(-)
Title: Solver for Partially Observable Markov Decision Processes
(POMDP)
Description: Provides the infrastructure to define and analyze the solutions of Partially Observable Markov Decision Processes (POMDP) models. The package includes pomdp-solve to solve POMDPs using a variety of exact and approximate value iteration algorithms. Smallwood and Sondik (1973) <doi:10.1287/opre.21.5.1071>.
Author: Michael Hahsler [aut, cph, cre],
Hossein Kamalzadeh [aut, cph],
Anthony R. Cassandra [ctb, cph]
Maintainer: Michael Hahsler <mhahsler@lyle.smu.edu>
Diff between pomdp versions 0.99.1 dated 2021-05-14 and 0.99.3 dated 2021-08-05
pomdp-0.99.1/pomdp/R/AAAinstalled.R |only pomdp-0.99.3/pomdp/DESCRIPTION | 12 pomdp-0.99.3/pomdp/MD5 | 97 +- pomdp-0.99.3/pomdp/NEWS.md | 12 pomdp-0.99.3/pomdp/R/AAAdatasets.R | 20 pomdp-0.99.3/pomdp/R/MDP.R | 118 ++- pomdp-0.99.3/pomdp/R/POMDP.R | 268 +++++--- pomdp-0.99.3/pomdp/R/check_installed.R |only pomdp-0.99.3/pomdp/R/colors.R | 33 - pomdp-0.99.3/pomdp/R/optimal_action.R | 26 pomdp-0.99.3/pomdp/R/plot_belief_space.R | 257 ++++--- pomdp-0.99.3/pomdp/R/plot_policy_graph.R | 139 ++-- pomdp-0.99.3/pomdp/R/plot_value_function.R | 194 +++-- pomdp-0.99.3/pomdp/R/policy.R | 52 - pomdp-0.99.3/pomdp/R/policy_graph.R | 151 ++-- pomdp-0.99.3/pomdp/R/print.text.R | 3 pomdp-0.99.3/pomdp/R/read_write_POMDP.R | 326 ++++++---- pomdp-0.99.3/pomdp/R/read_write_pomdp_solve.R | 144 ++-- pomdp-0.99.3/pomdp/R/reward.R | 48 - pomdp-0.99.3/pomdp/R/round_stochchastic.R | 28 pomdp-0.99.3/pomdp/R/sample_belief_space.R | 137 ++-- pomdp-0.99.3/pomdp/R/solve_POMDP.R | 618 +++++++++++-------- pomdp-0.99.3/pomdp/R/solve_SARSOP.R | 134 ++-- pomdp-0.99.3/pomdp/R/transition_matrix.R | 272 +++++--- pomdp-0.99.3/pomdp/R/update_belief.R | 354 ++++++---- pomdp-0.99.3/pomdp/R/visNetwork.R | 76 +- pomdp-0.99.3/pomdp/build/vignette.rds |binary pomdp-0.99.3/pomdp/inst/doc/POMDP.Rmd | 10 pomdp-0.99.3/pomdp/inst/doc/POMDP.html | 18 pomdp-0.99.3/pomdp/man/MDP.Rd | 8 pomdp-0.99.3/pomdp/man/POMDP.Rd | 26 pomdp-0.99.3/pomdp/man/plot_belief_space.Rd | 6 pomdp-0.99.3/pomdp/man/plot_policy_graph.Rd | 10 pomdp-0.99.3/pomdp/man/plot_value_function.Rd | 2 pomdp-0.99.3/pomdp/man/policy.Rd | 2 pomdp-0.99.3/pomdp/man/reward.Rd | 6 pomdp-0.99.3/pomdp/man/solve_POMDP.Rd | 64 - pomdp-0.99.3/pomdp/man/solve_SARSOP.Rd | 8 pomdp-0.99.3/pomdp/man/transition_matrix.Rd | 2 pomdp-0.99.3/pomdp/src/pomdp-solve/Makefile | 28 pomdp-0.99.3/pomdp/src/pomdp-solve/laspack/Makefile | 7 pomdp-0.99.3/pomdp/src/pomdp-solve/lp-solve/Makefile | 4 pomdp-0.99.3/pomdp/src/pomdp-solve/lp-solve/lex.l | 4 pomdp-0.99.3/pomdp/src/pomdp-solve/lp-solve/lex.yy.c | 90 -- pomdp-0.99.3/pomdp/src/pomdp-solve/lp-solve/lpkit.c | 2 pomdp-0.99.3/pomdp/src/pomdp-solve/mdp/Makefile | 4 pomdp-0.99.3/pomdp/src/pomdp-solve/mdp/lex.yy.c |only pomdp-0.99.3/pomdp/src/pomdp-solve/mdp/scanner.c | 79 -- pomdp-0.99.3/pomdp/src/pomdp-solve/mdp/scanner.l | 5 pomdp-0.99.3/pomdp/vignettes/POMDP.Rmd | 10 pomdp-0.99.3/pomdp/vignettes/bibliography.bib | 7 51 files changed, 2309 insertions(+), 1612 deletions(-)
Title: Calculation of Slope-Dependant Accumulated Cost Surface,
Least-Cost Paths, and Least-Cost Corridors Related to Human
Movement Across the Landscape
Description: Provides the facility to calculate non-isotropic accumulated cost surface, least-cost paths, and least-cost corridors using a number of human-movement-related cost functions that can be selected by the user. It just requires a Digital Terrain Model, a start location and (optionally) destination locations. See Alberti (2019) <doi:10.1016/j.softx.2019.100331>.
Author: Gianmarco Alberti [aut, cre]
Maintainer: Gianmarco Alberti <gianmarcoalberti@gmail.com>
Diff between movecost versions 1.2 dated 2021-07-07 and 1.3 dated 2021-08-05
DESCRIPTION | 12 +++--- MD5 | 22 ++++++----- NAMESPACE | 3 + NEWS.md | 15 +++----- R/movealloc.R |only R/movebound.R | 25 +++++++++++-- R/movecorr.R | 33 +++++++++++++++-- R/movecost.R | 103 ++++++++++++++++++++++++++++++++++++++++++------------- README.md | 10 ++++- man/movealloc.Rd |only man/movebound.Rd | 5 +- man/movecorr.Rd | 5 +- man/movecost.Rd | 47 ++++++++++++++++++------- 13 files changed, 205 insertions(+), 75 deletions(-)
Title: Blind Source Separation for Multivariate Spatial Data
Description: Blind source separation for multivariate spatial data based on simultaneous/joint diagonalization of local covariance matrices. This package is an implementation of the methods described in Bachoc, Genton, Nordhausen, Ruiz-Gazen and Virta (2020) <doi:10.1093/biomet/asz079>.
Author: Christoph Muehlmann [aut, cre]
(<https://orcid.org/0000-0001-7330-8434>),
Klaus Nordhausen [aut] (<https://orcid.org/0000-0002-3758-8501>),
Joni Virta [aut] (<https://orcid.org/0000-0002-2150-2769>)
Maintainer: Christoph Muehlmann <christoph.muehlmann@tuwien.ac.at>
Diff between SpatialBSS versions 0.10-0 dated 2021-05-07 and 0.11-0 dated 2021-08-05
DESCRIPTION | 12 ++++++------ MD5 | 31 +++++++++++++++++-------------- NAMESPACE | 8 +++++++- R/sbss.R | 11 ++++++----- R/sbss_test.R |only R/utils.R | 38 ++++++++++++++++++++++++++++++++++---- build/partial.rdb |binary build/vignette.rds |binary inst/ChangeLog.txt | 7 +++++++ inst/doc/SBSS.html | 4 ++-- man/SpatialBSS-package.Rd | 9 ++++++--- man/local_covariance_matrix.Rd | 7 ++++--- man/sbss.Rd | 8 +++++--- man/sbss_asymp.Rd |only man/sbss_boot.Rd |only man/spatial_kernel_matrix.Rd | 5 +++-- man/white_data.Rd | 7 ++++--- src/RcppExports.cpp | 5 +++++ 18 files changed, 106 insertions(+), 46 deletions(-)
Title: 'RStudio' Addins to Prettify 'JavaScript', 'C++', 'Python', and
More
Description: Provides 'RStudio' addins to prettify 'HTML', 'CSS', 'SCSS', 'JavaScript', 'JSX', 'Markdown', 'C(++)', 'LaTeX', 'Python', 'Julia', 'XML', 'Java', 'JSON', 'Ruby', and to reindent 'C(++)', 'Fortran', 'Java', 'Julia', 'Python', 'SAS', 'Scala', 'Shell' and 'SQL'. Two kinds of addins are provided: 'Prettify' and 'Indent'. The 'Indent' addins only reindent the code, while the 'Prettify' addins also modify the code, e.g. trailing semi-colons are added to 'JavaScript' code when they are missing.
Author: Stéphane Laurent [aut, cre],
James Long and contributors [ctb, cph] ('Prettier' library),
Zeb Zhao [ctb, cph] ('indent.js' library),
Marijn Haverbeke [ctb, cph] ('CodeMirror' library)
Maintainer: Stéphane Laurent <laurent_step@outlook.fr>
Diff between prettifyAddins versions 2.0.3 dated 2020-11-16 and 2.1.1 dated 2021-08-05
DESCRIPTION | 7 MD5 | 20 NEWS.md | 103 ++- R/prettify_V8.R | 644 ++++++++++++------------ inst/V8adds |only inst/shinyApp/www/prettier/parser-babel.js | 2 inst/shinyApp/www/prettier/parser-html.js | 30 - inst/shinyApp/www/prettier/parser-markdown.js | 8 inst/shinyApp/www/prettier/parser-postcss.js | 9 inst/shinyApp/www/prettier/parser-typescript.js |only inst/shinyApp/www/prettier/parser-yaml.js | 4 inst/shinyApp/www/prettier/standalone.js | 44 + 12 files changed, 462 insertions(+), 409 deletions(-)
More information about prettifyAddins at CRAN
Permanent link
Title: Open-Source Software for 'Omic' Data Analysis and Visualization
Description: A tool for interactive exploration of the results from 'omics'
experiments to facilitate novel discoveries from high-throughput biology. The
software includes R functions for the 'bioinformatician' to deposit study
metadata and the outputs from statistical analyses (e.g. differential
expression, enrichment). These results are then exported to an interactive
JavaScript dashboard that can be interrogated on the user’s local machine or
deployed online to be explored by collaborators. The dashboard includes
'sortable' tables, interactive plots including network visualization, and
fine-grained filtering based on statistical significance.
Author: Terrence Ernst [aut] (Web application),
John Blischak [aut, cre] (<https://orcid.org/0000-0003-2634-9879>),
Paul Nordlund [aut] (Web application),
Justin Moore [aut] (UpSet-related functions and web application),
Joe Dalen [aut] (Barcode functionality and web application),
Akshay Bhamidipati [aut] (Web application),
Brett Engelmann [aut],
AbbVie Inc. [cph, fnd]
Maintainer: John Blischak <jdblischak@gmail.com>
Diff between OmicNavigator versions 1.4.2 dated 2021-07-26 and 1.4.3 dated 2021-08-05
DESCRIPTION | 11 +-- MD5 | 28 ++++----- NEWS.md | 15 ++++ R/export.R | 4 + R/overlaps.R | 7 +- R/utility.R | 4 + README.md | 46 +++++++++++---- build/partial.rdb |binary inst/doc/OmicNavigatorAPI.pdf |binary inst/doc/OmicNavigatorUsersGuide.pdf |binary inst/tinytest/testAdd.R | 5 + inst/tinytest/testApp.R | 15 ++-- inst/tinytest/testCheck.R | 44 ++++++++++++++ inst/tinytest/testExport.R | 106 +++++++++++++++++++++++------------ man/addOverlaps.Rd | 7 +- 15 files changed, 218 insertions(+), 74 deletions(-)
Title: Non-Ordered Vectors
Description: Functionality for manipulating values of associative
maps. Ordinary R vectors are unsuitable for working with values of
associative maps because elements of an R vector may be accessed by
reference to their location in the vector, but associative maps are
stored in arbitrary order. However, when associating keys with
values one needs both parts to be in 1-1 correspondence, so one
cannot dispense with the order entirely. The 'disordR' package
includes a single S4 class, disord. This class allows one to
perform only those operations appropriate for manipulating values of
associative maps and prevents any other operation (such as accessing
an element at a particular location). A useful heuristic is that
one is only allowed to access or modify a disord object using a
python list comprehension. The idea is to prevent ill-defined
operations on values (or keys) of associative maps, whose order is
undefined or at best implementation-specific, while allowing and
facilitating sensible operations. The package is needed for
development versions of 'mvp', 'hyper2', 'spray', 'clifford', and
'freealg'.
Author: Robin K. S. Hankin [aut, cre] (<https://orcid.org/0000-0001-5982-0415>)
Maintainer: Robin K. S. Hankin <hankin.robin@gmail.com>
Diff between disordR versions 0.0-2 dated 2021-06-28 and 0.0-7 dated 2021-08-05
disordR-0.0-2/disordR/man/pmin.Rd |only disordR-0.0-7/disordR/DESCRIPTION | 8 disordR-0.0-7/disordR/MD5 | 26 +- disordR-0.0-7/disordR/NAMESPACE | 2 disordR-0.0-7/disordR/R/disordR.R | 147 ++++++-------- disordR-0.0-7/disordR/inst/doc/disordR.Rmd | 43 +++- disordR-0.0-7/disordR/inst/doc/disordR.html | 275 +++++++++++++++++++++++----- disordR-0.0-7/disordR/man/arith.Rd | 4 disordR-0.0-7/disordR/man/disord-class.Rd | 67 ------ disordR-0.0-7/disordR/man/disord.Rd | 12 + disordR-0.0-7/disordR/man/drop.Rd | 2 disordR-0.0-7/disordR/man/extract.Rd |only disordR-0.0-7/disordR/man/misc.Rd | 45 +++- disordR-0.0-7/disordR/tests |only disordR-0.0-7/disordR/vignettes/disordR.Rmd | 43 +++- 15 files changed, 436 insertions(+), 238 deletions(-)
Title: Lightweight Access to the 'Geospatial Data Abstraction Library'
('GDAL')
Description: Provides low-level access to 'GDAL' functionality for R packages.
'GDAL' is the 'Geospatial Data Abstraction Library' a translator for raster and vector geospatial data formats
that presents a single raster abstract data model and single vector abstract data model to the calling application
for all supported formats <https://gdal.org/>.
Author: Michael Sumner [aut, cre] (<https://orcid.org/0000-0002-2471-7511>),
Simon Wotherspoon [ctb] (figured out the mechanism for the resampling
algorithm),
Mark Padgham [ctb] (helped get started :)),
Edzer Pebesma [ctb] (wrote allocate_attribute, copied here from sf),
Roger Bivand [ctb] (wrote configure.ac, adapted here from rgdal),
Jim Hester [ctb] (wrote CollectorList.h, copied here from fs package),
Timothy Keitt [ctb] (wrote GetPointsInternal copied here from rgdal2
package),
Jeroen Ooms [ctb] (tweaked build process, provided Windows build tools),
Dale Maschette [ctb] (created the hex logo),
Joseph Stachelek [ctb],
Even Rouault [ctb] (primary author of the COG format and its use of the
GDALwarp app-library, example code used by the warper function
here),
Robert Hijmans [ctb] (wrote some source in the warper, terra package
used as example/inspiration)
Maintainer: Michael Sumner <mdsumner@gmail.com>
Diff between vapour versions 0.7.6 dated 2021-08-02 and 0.7.7 dated 2021-08-05
vapour-0.7.6/vapour/src/vapour.cpp |only vapour-0.7.7/vapour/DESCRIPTION | 11 +- vapour-0.7.7/vapour/MD5 | 50 ++++++------- vapour-0.7.7/vapour/NEWS.md | 14 +++ vapour-0.7.7/vapour/R/raster-info.R | 4 - vapour-0.7.7/vapour/R/raster-input.R | 2 vapour-0.7.7/vapour/R/vapour-gdal-library.R | 26 ++++-- vapour-0.7.7/vapour/R/vapour_input_attributes.R | 3 vapour-0.7.7/vapour/R/vapour_input_geometry.R | 28 +++++-- vapour-0.7.7/vapour/README.md | 11 -- vapour-0.7.7/vapour/build/vignette.rds |binary vapour-0.7.7/vapour/configure | 4 - vapour-0.7.7/vapour/configure.ac | 2 vapour-0.7.7/vapour/inst/doc/vapour.R | 10 +- vapour-0.7.7/vapour/inst/doc/vapour.Rmd | 12 +-- vapour-0.7.7/vapour/inst/doc/vapour.html | 42 +++++----- vapour-0.7.7/vapour/inst/include/gdallibrary/gdallibrary.h | 2 vapour-0.7.7/vapour/inst/warpsandbox/warping.R | 2 vapour-0.7.7/vapour/man/figures/README-lod-1.png |only vapour-0.7.7/vapour/man/figures/README-topo-example-1.png |only vapour-0.7.7/vapour/man/figures/README-topo-example-2.png |only vapour-0.7.7/vapour/man/vapour_srs_wkt.Rd | 13 ++- vapour-0.7.7/vapour/man/vapour_warp_raster.Rd | 2 vapour-0.7.7/vapour/src/Makevars.in | 3 vapour-0.7.7/vapour/tests/testthat/test-features.R | 6 - vapour-0.7.7/vapour/tests/testthat/test-utils.R | 2 vapour-0.7.7/vapour/tests/testthat/test-warper.R | 4 - vapour-0.7.7/vapour/vignettes/vapour.Rmd | 12 +-- 28 files changed, 153 insertions(+), 112 deletions(-)
Title: Landscape Visualizations in R and 'Unity'
Description: Functions for the retrieval, manipulation, and visualization of
'geospatial' data, with an aim towards producing '3D' landscape
visualizations in the 'Unity' '3D' rendering engine. Functions are also
provided for retrieving elevation data and base map tiles from the 'USGS'
National Map ('<https://apps.nationalmap.gov/services/>').
Author: Michael Mahoney [aut, cre] (<https://orcid.org/0000-0003-2402-304X>),
Mike Johnson [rev] (Mike reviewed the package (v. 0.2.1) for rOpenSci,
see <https://github.com/ropensci/software-review/issues/416>),
Sydney Foks [rev] (Sydney reviewed the package (v. 0.2.1) for rOpenSci,
see <https://github.com/ropensci/software-review/issues/416>)
Maintainer: Michael Mahoney <mike.mahoney.218@gmail.com>
Diff between terrainr versions 0.4.1 dated 2021-05-30 and 0.5.0 dated 2021-08-05
terrainr-0.4.1/terrainr/man/figures/elevation.jpg |only terrainr-0.4.1/terrainr/man/figures/ggplot.jpg |only terrainr-0.4.1/terrainr/man/figures/naip.jpg |only terrainr-0.4.1/terrainr/man/figures/overlay.jpg |only terrainr-0.4.1/terrainr/man/figures/unity-lakeside.jpg |only terrainr-0.4.1/terrainr/vignettes/create_layer.jpg |only terrainr-0.4.1/terrainr/vignettes/files.jpg |only terrainr-0.4.1/terrainr/vignettes/finished.jpg |only terrainr-0.4.1/terrainr/vignettes/finished_again.jpg |only terrainr-0.4.1/terrainr/vignettes/heightmap_import.jpg |only terrainr-0.4.1/terrainr/vignettes/resize_layer.jpg |only terrainr-0.4.1/terrainr/vignettes/tile_arrangement.jpg |only terrainr-0.5.0/terrainr/DESCRIPTION | 6 terrainr-0.5.0/terrainr/MD5 | 148 ++-- terrainr-0.5.0/terrainr/NAMESPACE | 1 terrainr-0.5.0/terrainr/NEWS.md | 44 + terrainr-0.5.0/terrainr/R/add_bbox_buffer.R | 104 +-- terrainr-0.5.0/terrainr/R/calc_haversine_distance.R | 3 terrainr-0.5.0/terrainr/R/geom_spatial_rgb.R | 48 - terrainr-0.5.0/terrainr/R/georeference_overlay.R | 5 terrainr-0.5.0/terrainr/R/get_tiles.R | 305 ++++++---- terrainr-0.5.0/terrainr/R/hit_api.R | 33 - terrainr-0.5.0/terrainr/R/make_manifest.R |only terrainr-0.5.0/terrainr/R/merge_rasters.R | 77 +- terrainr-0.5.0/terrainr/R/raster_to_raw_tiles.R | 37 - terrainr-0.5.0/terrainr/R/utils.R | 17 terrainr-0.5.0/terrainr/R/vector_to_overlay.R | 8 terrainr-0.5.0/terrainr/README.md | 78 +- terrainr-0.5.0/terrainr/inst/CITATION |only terrainr-0.5.0/terrainr/inst/doc/overview.R | 17 terrainr-0.5.0/terrainr/inst/doc/overview.Rmd | 27 terrainr-0.5.0/terrainr/inst/doc/overview.html | 41 - terrainr-0.5.0/terrainr/inst/doc/unity_instructions.R | 61 -- terrainr-0.5.0/terrainr/inst/doc/unity_instructions.Rmd | 208 ++---- terrainr-0.5.0/terrainr/inst/doc/unity_instructions.html | 84 +- terrainr-0.5.0/terrainr/inst/import_terrain.cs |only terrainr-0.5.0/terrainr/man/addbuff.Rd | 14 terrainr-0.5.0/terrainr/man/figures/20210728elevation.jpg |only terrainr-0.5.0/terrainr/man/figures/20210728ggplot.jpg |only terrainr-0.5.0/terrainr/man/figures/20210728naip.jpg |only terrainr-0.5.0/terrainr/man/figures/20210728unity.jpg |only terrainr-0.5.0/terrainr/man/figures/logo.png |binary terrainr-0.5.0/terrainr/man/geom_spatial_rgb.Rd | 46 - terrainr-0.5.0/terrainr/man/georeference_overlay.Rd | 5 terrainr-0.5.0/terrainr/man/get_tiles.Rd | 11 terrainr-0.5.0/terrainr/man/hit_national_map_api.Rd | 3 terrainr-0.5.0/terrainr/man/make_manifest.Rd |only terrainr-0.5.0/terrainr/man/merge_rasters.Rd | 12 terrainr-0.5.0/terrainr/man/raster_to_raw_tiles.Rd | 29 terrainr-0.5.0/terrainr/tests/testthat/test-1-make_manifest.R |only terrainr-0.5.0/terrainr/tests/testthat/test-1-raster_to_raw_tiles.R | 22 terrainr-0.5.0/terrainr/tests/testthat/test-2-get_tiles_3dep.R | 50 - terrainr-0.5.0/terrainr/tests/testthat/test-2-get_tiles_contours.R | 16 terrainr-0.5.0/terrainr/tests/testthat/test-2-get_tiles_geonames.R | 15 terrainr-0.5.0/terrainr/tests/testthat/test-2-get_tiles_govunits.R | 15 terrainr-0.5.0/terrainr/tests/testthat/test-2-get_tiles_naip.R | 33 - terrainr-0.5.0/terrainr/tests/testthat/test-2-get_tiles_nhd.R | 15 terrainr-0.5.0/terrainr/tests/testthat/test-2-get_tiles_transportation.R | 15 terrainr-0.5.0/terrainr/tests/testthat/test-2-get_tiles_wbd.R | 15 terrainr-0.5.0/terrainr/tests/testthat/test-3-hit_api.R | 4 terrainr-0.5.0/terrainr/tests/testthat/test-4-merge_rasters.R | 44 + terrainr-0.5.0/terrainr/tests/testthat/test-add_bbox_buffer.R | 7 terrainr-0.5.0/terrainr/tests/testthat/test-geom_spatial_rgb.R | 156 ++--- terrainr-0.5.0/terrainr/tests/testthat/test-get_tiles.R | 142 ++-- terrainr-0.5.0/terrainr/tests/testthat/test-vector_to_overlay.R | 86 +- terrainr-0.5.0/terrainr/tests/testthat/testdata/NewNAIPPlus.png |only terrainr-0.5.0/terrainr/tests/testthat/testdata/NewNAIPPlus_gr.tif |only terrainr-0.5.0/terrainr/tests/testthat/testdata/example.manifest |only terrainr-0.5.0/terrainr/tests/testthat/testdata/manifest_ort.png |only terrainr-0.5.0/terrainr/tests/testthat/testdata/projected.tif |only terrainr-0.5.0/terrainr/tests/testthat/testdata/vto_line.png |binary terrainr-0.5.0/terrainr/tests/testthat/testdata/vto_point.png |binary terrainr-0.5.0/terrainr/tests/testthat/testdata/vto_poly.png |binary terrainr-0.5.0/terrainr/vignettes/combined_overlay.jpg |binary terrainr-0.5.0/terrainr/vignettes/ebert_unity.jpg |binary terrainr-0.5.0/terrainr/vignettes/elevation_ggplot.jpg |binary terrainr-0.5.0/terrainr/vignettes/example_dem.jpg |binary terrainr-0.5.0/terrainr/vignettes/example_ortho.jpg |binary terrainr-0.5.0/terrainr/vignettes/generated_files.png |only terrainr-0.5.0/terrainr/vignettes/manifest_import.png |only terrainr-0.5.0/terrainr/vignettes/mt_ebert_1_1.jpg |binary terrainr-0.5.0/terrainr/vignettes/mt_elbert_overlay.jpg |binary terrainr-0.5.0/terrainr/vignettes/new_scene.jpg |binary terrainr-0.5.0/terrainr/vignettes/new_unity.jpg |binary terrainr-0.5.0/terrainr/vignettes/ominous.png |only terrainr-0.5.0/terrainr/vignettes/ortho_ggplot.jpg |binary terrainr-0.5.0/terrainr/vignettes/overview.Rmd | 27 terrainr-0.5.0/terrainr/vignettes/terrain_surface.jpg |only terrainr-0.5.0/terrainr/vignettes/unity_instructions.Rmd | 208 ++---- terrainr-0.5.0/terrainr/vignettes/with_points.jpg |binary 90 files changed, 1255 insertions(+), 1087 deletions(-)
Title: Utility Toolbox for RAVE Project
Description: Includes multiple cross-platform read/write interfaces for
'RAVE' project. 'RAVE' stands for "R analysis and visualization of human
intracranial electroencephalography data". The whole project aims at
providing powerful free-source package that analyze brain recordings from
patients with electrodes placed on the cortical surface or inserted into
the brain. 'raveio' as part of this project provides tools to read/write
neurophysiology data from/to 'RAVE' file structure, as well as several
popular formats including 'EDF(+)', 'Matlab', 'BIDS-iEEG', and 'HDF5',
etc. Documentation and examples about 'RAVE' project are provided at
<https://openwetware.org/wiki/RAVE>, and the paper by John F. Magnotti,
Zhengjia Wang, Michael S. Beauchamp (2020)
<doi:10.1016/j.neuroimage.2020.117341>; see 'citation("raveio")' for
details.
Author: Zhengjia Wang [aut, cre],
Beauchamp lab [cph, fnd]
Maintainer: Zhengjia Wang <dipterix.wang@gmail.com>
Diff between raveio versions 0.0.3 dated 2020-08-14 and 0.0.4 dated 2021-08-05
raveio-0.0.3/raveio/man/lazyarray_to_tensor.Rd |only raveio-0.0.4/raveio/DESCRIPTION | 46 raveio-0.0.4/raveio/MD5 | 52 - raveio-0.0.4/raveio/NAMESPACE | 1 raveio-0.0.4/raveio/NEWS.md | 10 raveio-0.0.4/raveio/R/class-preprocess.R | 7 raveio-0.0.4/raveio/R/class-project.R | 2 raveio-0.0.4/raveio/R/class-subject.R | 1 raveio-0.0.4/raveio/R/csv2.R |only raveio-0.0.4/raveio/R/fst.R | 5 raveio-0.0.4/raveio/R/hdf5.R | 796 +++++++++++----- raveio-0.0.4/raveio/R/matlab.R | 32 raveio-0.0.4/raveio/R/tensor.R | 141 -- raveio-0.0.4/raveio/R/zzz.R | 83 + raveio-0.0.4/raveio/README.md | 8 raveio-0.0.4/raveio/build/partial.rdb |binary raveio-0.0.4/raveio/inst/WORDLIST | 25 raveio-0.0.4/raveio/inst/hdf5_installer.sh |only raveio-0.0.4/raveio/inst/rave.yaml |only raveio-0.0.4/raveio/man/LazyFST.Rd | 5 raveio-0.0.4/raveio/man/LazyH5.Rd | 28 raveio-0.0.4/raveio/man/Tensor.Rd | 6 raveio-0.0.4/raveio/man/h5_valid.Rd | 16 raveio-0.0.4/raveio/man/load_h5.Rd | 7 raveio-0.0.4/raveio/man/read_mat.Rd | 10 raveio-0.0.4/raveio/man/save_h5.Rd | 5 raveio-0.0.4/raveio/tests/testthat/test-class-subject.R | 10 raveio-0.0.4/raveio/tests/testthat/test-cls_project.R | 2 raveio-0.0.4/raveio/tests/testthat/test-preprocess-v2.R | 2 29 files changed, 841 insertions(+), 459 deletions(-)
Title: General Smoothing Splines
Description: A comprehensive package for structural multivariate
function estimation using smoothing splines.
Author: Chong Gu <chong@purdue.edu>
Maintainer: Chong Gu <chong@purdue.edu>
Diff between gss versions 2.2-2 dated 2020-05-26 and 2.2-3 dated 2021-08-05
ChangeLog | 8 ++++++++ DESCRIPTION | 8 ++++---- MD5 | 13 +++++++------ R/sscomp.R | 11 ++++++++--- inst/CITATION | 2 +- man/sscomp.Rd | 6 ++++++ src/dchdc0.f |only src/smolyak.c | 5 +++-- 8 files changed, 37 insertions(+), 16 deletions(-)
Title: Create Complex UpSet Plots Using 'ggplot2' Components
Description: UpSet plots are an improvement over Venn Diagram for set overlap visualizations.
Striving to bring the best of the 'UpSetR' and 'ggplot2', this package offers a way to create
complex overlap visualisations, using simple and familiar tools, i.e. geoms of 'ggplot2'.
For introduction to UpSet concept, see Lex et al. (2014) <doi:10.1109/TVCG.2014.2346248>.
Author: Michał Krassowski [aut, cre] (<https://orcid.org/0000-0002-9638-7785>)
Maintainer: Michał Krassowski <krassowski.michal+r@gmail.com>
Diff between ComplexUpset versions 1.3.0 dated 2021-06-06 and 1.3.1 dated 2021-08-05
DESCRIPTION | 6 +++--- MD5 | 4 ++-- R/upset.R | 8 ++++---- 3 files changed, 9 insertions(+), 9 deletions(-)
Title: Adaptive Approaches for Signal Detection in Pharmacovigilance
Description: A collection of several pharmacovigilance signal detection methods based on adaptive lasso. Additional lasso-based and propensity score-based signal detection approaches are also supplied.
Author: Emeline Courtois [cre],
Ismaïl Ahmed [aut],
Hervé Perdry [ctb]
Maintainer: Emeline Courtois <emeline.courtois@inserm.fr>
Diff between adapt4pv versions 0.1.0 dated 2020-06-24 and 0.2-0 dated 2021-08-05
adapt4pv-0.1.0/adapt4pv/R/adapt_ridge.R |only adapt4pv-0.1.0/adapt4pv/man/adapt_ridge.Rd |only adapt4pv-0.2-0/adapt4pv/DESCRIPTION | 6 adapt4pv-0.2-0/adapt4pv/MD5 | 43 +++---- adapt4pv-0.2-0/adapt4pv/NAMESPACE | 1 adapt4pv-0.2-0/adapt4pv/NEWS.md |only adapt4pv-0.2-0/adapt4pv/R/adapt_bic.R | 4 adapt4pv-0.2-0/adapt4pv/R/adapt_cisl.R | 14 +- adapt4pv-0.2-0/adapt4pv/R/adapt_cv.R | 178 +++++++++++++++++++++++------ adapt4pv-0.2-0/adapt4pv/R/adapt_univ.R | 153 ++++++++++++++++++------ adapt4pv-0.2-0/adapt4pv/R/cisl.R | 2 adapt4pv-0.2-0/adapt4pv/R/est_ps_hdps.R | 2 adapt4pv-0.2-0/adapt4pv/R/internals.R | 58 +++++++++ adapt4pv-0.2-0/adapt4pv/R/lasso_bic.R | 2 adapt4pv-0.2-0/adapt4pv/R/lasso_perm.R | 2 adapt4pv-0.2-0/adapt4pv/build/partial.rdb |binary adapt4pv-0.2-0/adapt4pv/man/adapt_bic.Rd | 4 adapt4pv-0.2-0/adapt4pv/man/adapt_cisl.Rd | 14 +- adapt4pv-0.2-0/adapt4pv/man/adapt_cv.Rd | 31 +++-- adapt4pv-0.2-0/adapt4pv/man/adapt_univ.Rd | 18 ++ adapt4pv-0.2-0/adapt4pv/man/cisl.Rd | 2 adapt4pv-0.2-0/adapt4pv/man/est_ps_hdps.Rd | 2 adapt4pv-0.2-0/adapt4pv/man/lasso_bic.Rd | 2 adapt4pv-0.2-0/adapt4pv/man/lasso_perm.Rd | 2 24 files changed, 404 insertions(+), 136 deletions(-)
Title: A Suite of Convergence Acceleration Schemes for EM, MM and Other
Fixed-Point Algorithms
Description: Algorithms for accelerating the convergence of slow,
monotone sequences from smooth, contraction mapping such as the
EM and MM algorithms. It can be used to accelerate any smooth,
linearly convergent acceleration scheme. A tutorial style
introduction to this package is available in a vignette on the
CRAN download page or, when the package is loaded in an R
session, with vignette("turboEM").
Author: Jennifer F. Bobb [aut],
Ravi Varadhan [aut, cre],
Hui Zhao [ctb]
Maintainer: Ravi Varadhan <ravi.varadhan@jhu.edu>
Diff between turboEM versions 2020.1 dated 2020-01-13 and 2021.1 dated 2021-08-05
DESCRIPTION | 9 ++++----- MD5 | 10 +++++----- NEWS | 4 ++++ R/turboem.R | 36 +++++++++++++++++++++++++++++++----- inst/doc/turboEM.pdf |binary man/turboem.Rd | 22 +++++++++++++--------- 6 files changed, 57 insertions(+), 24 deletions(-)
Title: Drop-in Replacements for Base String Functions Powered by
'stringi'
Description: English is the native language for only 5% of the World population.
Also, only 17% of us can understand this text. Moreover, the Latin alphabet
is the main one for merely 36% of the total.
The early computer era, now a very long time ago, was dominated by the US.
Due to the proliferation of the internet, smartphones, social media, and
other technologies and communication platforms, this is no longer the case.
This package replaces base R string functions (such as grep(),
tolower(), and sprintf()) with ones that fully
support the Unicode standards related to natural language processing,
fixes some long-standing inconsistencies, and introduces
some new, useful features.
Thanks to 'ICU' (International Components for Unicode) and 'stringi',
they are fast, reliable, and portable across different platforms.
Author: Marek Gagolewski [aut, cre, cph]
(<https://orcid.org/0000-0003-0637-6028>)
Maintainer: Marek Gagolewski <marek@gagolewski.com>
Diff between stringx versions 0.1.2 dated 2021-07-28 and 0.1.3 dated 2021-08-05
DESCRIPTION | 8 +-- MD5 | 78 ++++++++++++++++++------------------- NEWS | 11 ++++- R/chartr.R | 13 +++--- R/common.R | 25 +++-------- R/constants.R | 3 - R/gregexpr.R | 16 +++---- R/gregextr.R | 8 +-- R/grepl.R | 22 +++++----- R/gsub.R | 8 +-- R/nchar.R | 4 - R/paste.R | 8 +-- R/sort.R | 4 - R/sprintf.R | 4 - R/startswith.R | 8 +-- R/strcoll.R | 4 - R/strrep.R | 8 +-- R/strsplit.R | 2 R/strtrim.R | 4 - R/strwrap.R | 2 R/substr.R | 16 +++---- R/trimws.R | 2 inst/realtest/gregexpr-stringx.R | 24 +++++++---- inst/realtest/gregextr-stringx.R | 26 ++++++++++-- inst/realtest/grepl-stringx.R | 12 ++++- inst/realtest/gsub-stringx.R | 13 +++++- inst/realtest/nchar-all.R | 6 +- inst/realtest/startswith-stringx.R | 26 ++++++++++-- inst/realtest/strcoll-stringx.R | 1 inst/realtest/strptime-all.R | 2 inst/realtest/strptime-stringx.R | 5 +- inst/realtest/strsplit-stringx.R | 5 +- inst/realtest/strtrim-all.R | 14 ++++++ inst/realtest/strwrap-all.R | 4 - inst/realtest/substr-all.R | 9 ++-- man/chartr.Rd | 3 - man/constants.Rd | 3 - man/grepl.Rd | 12 ++--- man/gsub.Rd | 2 tests/realtest.R | 22 +++++++++- 40 files changed, 275 insertions(+), 172 deletions(-)
Title: Deployment Interface for R Markdown Documents and Shiny
Applications
Description: Programmatic deployment interface for 'RPubs', 'shinyapps.io', and
'RStudio Connect'. Supported content types include R Markdown documents,
Shiny applications, Plumber APIs, plots, and static web content.
Author: Jonathan McPherson [aut, cre],
JJ Allaire [aut],
RStudio [cph, fnd]
Maintainer: Jonathan McPherson <jonathan@rstudio.com>
Diff between rsconnect versions 0.8.18 dated 2021-05-24 and 0.8.24 dated 2021-08-05
DESCRIPTION | 6 - MD5 | 24 ++--- NEWS.md | 11 ++ R/bundle.R | 177 +++++++++++++++++++++++++++++++++------- R/dependencies.R | 3 R/deployApp.R | 23 ++++- R/deployDoc.R | 5 - R/lint-framework.R | 3 R/rmdindex.R | 5 - man/appDependencies.Rd | 3 man/deployApp.Rd | 3 man/listBundleFiles.Rd | 4 tests/testthat/test-detection.R | 2 13 files changed, 210 insertions(+), 59 deletions(-)
Title: Prepare Reproducible Example Code via the Clipboard
Description: Convenience wrapper that uses the 'rmarkdown'
package to render small snippets of code to target formats that
include both code and output. The goal is to encourage the sharing of
small, reproducible, and runnable examples on code-oriented websites,
such as <https://stackoverflow.com> and <https://github.com>, or in
email. The user's clipboard is the default source of input code and
the default target for rendered output. 'reprex' also extracts clean,
runnable R code from various common formats, such as copy/paste from
an R session.
Author: Jennifer Bryan [aut, cre] (<https://orcid.org/0000-0002-6983-2759>),
Jim Hester [aut] (<https://orcid.org/0000-0002-2739-7082>),
David Robinson [aut],
Hadley Wickham [aut] (<https://orcid.org/0000-0003-4757-117X>),
RStudio [cph, fnd]
Maintainer: Jennifer Bryan <jenny@rstudio.com>
Diff between reprex versions 2.0.0 dated 2021-04-02 and 2.0.1 dated 2021-08-05
DESCRIPTION | 6 +++--- MD5 | 18 +++++++++--------- NEWS.md | 9 +++++++++ R/reprex_document.R | 3 ++- R/reprex_impl.R | 6 ++++-- R/utils-io.R | 11 ++++++++--- build/vignette.rds |binary tests/testthat/_snaps/utils-ui.md | 6 +++--- tests/testthat/test-rprofile.R | 4 ++-- tests/testthat/test-utils-io.R | 7 +++++++ 10 files changed, 47 insertions(+), 23 deletions(-)
Title: Using R to Run 'JAGS'
Description: Providing wrapper functions to implement Bayesian analysis in JAGS. Some major features include monitoring convergence of a MCMC model using Rubin and Gelman Rhat statistics, automatically running a MCMC model till it converges, and implementing parallel processing of a MCMC model for multiple chains.
Author: Yu-Sung Su <suyusung@tsinghua.edu.cn>,
Masanao Yajima <yajima@bu.edu>,
Maintainer: Yu-Sung Su <suyusung@tsinghua.edu.cn>
Diff between R2jags versions 0.6-1 dated 2020-04-27 and 0.7-1 dated 2021-08-05
R2jags-0.6-1/R2jags/README.md |only R2jags-0.7-1/R2jags/CHANGELOG | 3 +++ R2jags-0.7-1/R2jags/DESCRIPTION | 11 +++++++---- R2jags-0.7-1/R2jags/MD5 | 22 ++++++++++++---------- R2jags-0.7-1/R2jags/R/as.bugs.array2.R | 9 +++++---- R2jags-0.7-1/R2jags/R/jags.R | 12 +++++++----- R2jags-0.7-1/R2jags/R/jags.sims.R | 7 ++++--- R2jags-0.7-1/R2jags/R/jagsParallel.R | 10 +++++----- R2jags-0.7-1/R2jags/R/print.R | 4 ++-- R2jags-0.7-1/R2jags/R/traceplot.R | 16 ++++++++-------- R2jags-0.7-1/R2jags/man/jags.Rd | 4 ++-- R2jags-0.7-1/R2jags/tests |only 12 files changed, 55 insertions(+), 43 deletions(-)
Title: Lists of Numeric Atomic Objects
Description: Create and manipulate numeric list ('nlist')
objects. An 'nlist' is an S3 list of uniquely named numeric objects.
An numeric object is an integer or double vector, matrix or array. An
'nlists' object is a S3 class list of 'nlist' objects with the same
names, dimensionalities and typeofs. Numeric list objects are of
interest because they are the raw data inputs for analytic engines
such as 'JAGS', 'STAN' and 'TMB'. Numeric lists objects, which are
useful for storing multiple realizations of of simulated data sets,
can be converted to coda::mcmc and coda::mcmc.list objects.
Author: Joe Thorley [aut, cre] (<https://orcid.org/0000-0002-7683-4592>),
Poisson Consulting [cph, fnd]
Maintainer: Joe Thorley <joe@poissonconsulting.ca>
Diff between nlist versions 0.3.1 dated 2021-02-06 and 0.3.2 dated 2021-08-05
nlist-0.3.1/nlist/R/zzz.R |only nlist-0.3.2/nlist/DESCRIPTION | 7 - nlist-0.3.2/nlist/MD5 | 87 ++++++++--------- nlist-0.3.2/nlist/NAMESPACE | 5 nlist-0.3.2/nlist/NEWS.md | 6 + nlist-0.3.2/nlist/R/aggregate.R | 11 +- nlist-0.3.2/nlist/R/as-mcmc-list.R | 3 nlist-0.3.2/nlist/R/as-mcmc.R | 2 nlist-0.3.2/nlist/R/as-nlist.R | 1 nlist-0.3.2/nlist/R/as-nlists.R | 1 nlist-0.3.2/nlist/R/as-term-frame.R | 3 nlist-0.3.2/nlist/R/as-term.R | 3 nlist-0.3.2/nlist/R/collapse-chains.R | 3 nlist-0.3.2/nlist/R/complete-terms.R | 7 - nlist-0.3.2/nlist/R/is.R | 3 nlist-0.3.2/nlist/R/nlist.R | 1 nlist-0.3.2/nlist/R/nlists.R | 1 nlist-0.3.2/nlist/R/params.R | 2 nlist-0.3.2/nlist/build/nlist.pdf |binary nlist-0.3.2/nlist/inst/WORDLIST | 1 nlist-0.3.2/nlist/man/aggregate.nlist.Rd | 5 nlist-0.3.2/nlist/man/aggregate.nlists.Rd | 9 + nlist-0.3.2/nlist/man/as_mcmc.Rd | 7 + nlist-0.3.2/nlist/man/as_mcmc_list.Rd | 5 nlist-0.3.2/nlist/man/as_nlist.Rd | 5 nlist-0.3.2/nlist/man/as_nlists.Rd | 5 nlist-0.3.2/nlist/man/as_term.mcmc.Rd | 9 + nlist-0.3.2/nlist/man/as_term.nlist.Rd | 9 + nlist-0.3.2/nlist/man/as_term.nlists.Rd | 9 + nlist-0.3.2/nlist/man/as_term_frame.Rd | 9 + nlist-0.3.2/nlist/man/as_term_frame.nlist.Rd | 9 + nlist-0.3.2/nlist/man/as_term_frame.nlists.Rd | 9 + nlist-0.3.2/nlist/man/collapse_chains.mcmc.Rd | 9 - nlist-0.3.2/nlist/man/collapse_chains.nlist.Rd | 9 - nlist-0.3.2/nlist/man/collapse_chains.nlists.Rd | 9 - nlist-0.3.2/nlist/man/complete_terms.mcmc.Rd | 2 nlist-0.3.2/nlist/man/fill_all.nlist.Rd | 4 nlist-0.3.2/nlist/man/fill_all.nlists.Rd | 4 nlist-0.3.2/nlist/man/fill_na.nlist.Rd | 7 + nlist-0.3.2/nlist/man/fill_na.nlists.Rd | 7 + nlist-0.3.2/nlist/man/nlist.Rd | 3 nlist-0.3.2/nlist/man/nlists.Rd | 3 nlist-0.3.2/nlist/man/params.Rd | 4 nlist-0.3.2/nlist/man/reexports.Rd | 13 +- nlist-0.3.2/nlist/tests/testthat/test-complete-terms.R | 6 + 45 files changed, 232 insertions(+), 85 deletions(-)
Title: Pacote Para Analise Multivariada
Description: Package with multivariate analysis methodologies for experiment evaluation.
The package estimates dissimilarity measures, builds dendrograms, obtains MANOVA,
principal components, canonical variables, etc. (Pacote com metodologias de analise
multivariada para avaliação de experimentos. O pacote estima medidas de dissimilaridade,
construi de dendogramas, obtem a MANOVA, componentes principais, variáveis canônicas, etc.)
Author: Alcinei Mistico Azevedo [aut, cre]
(<https://orcid.org/0000-0001-5196-0851>)
Maintainer: Alcinei Mistico Azevedo <alcineimistico@hotmail.com>
Diff between MultivariateAnalysis versions 0.3.0 dated 2021-07-23 and 0.4.0 dated 2021-08-05
DESCRIPTION | 11 +- MD5 | 85 ++++++++++++--- NAMESPACE | 6 + NEWS.md | 13 ++ R/ApplyDissimilaridade.R | 2 R/CompontesPrincipais.R | 17 ++- R/CoordenadasPrincipais.R |only R/Dados.DBC.Misto.R |only R/Dendograma.R | 54 ++++++++-- R/Distancia.R | 125 +++++++++++++++++------ R/MediaDistancia.R | 64 ++++++++--- R/MultivariateAnalysis-package.R | 3 R/Quant2Quali.R |only R/Tocher.R | 2 R/VariaveisCanonicas.R | 13 ++ R/VariaveisCanonicas2.R | 3 R/zzz.R |only build |only data/Dados.DBC.Misto.txt |only data/Dados.Fat2.DBC.txt | 194 ++++++++++++++++++------------------ inst |only man/ApplyDissimilaridade.Rd | 2 man/ComponentesPrincipais.Rd | 15 ++ man/CoordenadasPrincipais.Rd |only man/Dados.DBC.Misto.Rd |only man/Dendograma.Rd | 29 ++++- man/Distancia.Rd | 9 + man/MediaDistancia.Rd | 32 +++-- man/MultivariateAnalysis-package.Rd | 60 +++++------ man/Quant2Quali.Rd |only man/VariaveisCanonicas.Rd | 13 ++ vignettes |only 32 files changed, 513 insertions(+), 239 deletions(-)
More information about MultivariateAnalysis at CRAN
Permanent link
Title: Preprocessing Operators and Pipelines for 'mlr3'
Description: Dataflow programming toolkit that enriches 'mlr3' with a diverse
set of pipelining operators ('PipeOps') that can be composed into graphs.
Operations exist for data preprocessing, model fitting, and ensemble
learning. Graphs can themselves be treated as 'mlr3' 'Learners' and can
therefore be resampled, benchmarked, and tuned.
Author: Martin Binder [aut, cre],
Florian Pfisterer [aut] (<https://orcid.org/0000-0001-8867-762X>),
Lennart Schneider [aut] (<https://orcid.org/0000-0003-4152-5308>),
Bernd Bischl [aut] (<https://orcid.org/0000-0001-6002-6980>),
Michel Lang [aut] (<https://orcid.org/0000-0001-9754-0393>),
Susanne Dandl [aut]
Maintainer: Martin Binder <mlr.developer@mb706.com>
Diff between mlr3pipelines versions 0.3.5 dated 2021-07-06 and 0.3.5-1 dated 2021-08-05
DESCRIPTION | 6 +- MD5 | 20 +++++---- NAMESPACE | 1 NEWS.md | 4 + R/mlr_graphs_elements.R | 58 ++++++++++++++++++++++++++++ build/partial.rdb |binary man/pipeline_stacking.Rd |only tests/testthat/test_GraphLearner.R | 4 - tests/testthat/test_mlr_graphs_stacking.R |only tests/testthat/test_pipeop_kernelpca.R | 4 + tests/testthat/test_pipeop_textvectorizer.R | 10 ++++ tests/testthat/test_pipeop_vtreat.R | 10 ++++ 12 files changed, 103 insertions(+), 14 deletions(-)
Title: Helper Functions for Bayesian Analyses
Description: Functions to 'numericise' 'R' objects (coerce to numeric
objects), summarise 'MCMC' (Monte Carlo Markov Chain) samples and
calculate deviance residuals as well as 'R' translations of 'BUGS'
(Bayesian Using Gibbs Sampling) and 'JAGS' (Just Another Gibbs
Sampler) functions.
Author: Joe Thorley [aut, cre] (<https://orcid.org/0000-0002-7683-4592>),
Kirill Müller [ctb] (<https://orcid.org/0000-0002-1416-3412>),
Nadine Hussein [ctb] (<https://orcid.org/0000-0003-4470-8361>),
Poisson Consulting [cph, fnd]
Maintainer: Joe Thorley <joe@poissonconsulting.ca>
Diff between extras versions 0.1.0 dated 2020-09-26 and 0.2.0 dated 2021-08-05
DESCRIPTION | 27 +++--- MD5 | 154 +++++++++++++++++++++++++---------- NAMESPACE | 48 ++++++++++ NEWS.md | 41 +++++++++ R/as-list.R | 28 ++++++ R/dev.R |only R/fabs.R |only R/fill-all.R | 3 R/fill-na.R | 6 + R/ilogit.R | 16 +++ R/log-lik.R |only R/lower.R | 10 +- R/mean.R |only R/median.R |only R/moments.R |only R/namespace.R | 1 R/odds.R |only R/params.R | 19 +++- R/pextreme.R | 2 R/pvalue.R | 20 +++- R/ran.R |only R/res.R |only R/sd.R |only R/sextreme.R | 5 - R/svalue.R | 7 - R/upper.R | 10 +- R/zeros.R |only R/zscore.R | 15 ++- README.md | 7 - build |only inst/WORDLIST | 23 ++--- man/as_list.Rd |only man/dev_bern.Rd |only man/dev_binom.Rd |only man/dev_gamma_pois.Rd |only man/dev_lnorm.Rd |only man/dev_neg_binom.Rd |only man/dev_norm.Rd |only man/dev_pois.Rd |only man/extras-package.Rd | 10 +- man/fabs.Rd |only man/figures/lifecycle-superseded.svg |only man/fill_all.Rd | 4 man/fill_na.Rd | 7 + man/ilogit.Rd | 2 man/invlogit.Rd |only man/kurtosis.Rd |only man/log-set.Rd | 2 man/log_lik_bern.Rd |only man/log_lik_binom.Rd |only man/log_lik_gamma_pois.Rd |only man/log_lik_lnorm.Rd |only man/log_lik_neg_binom.Rd |only man/log_lik_norm.Rd |only man/log_lik_pois.Rd |only man/log_odds_ratio.Rd |only man/logit-set.Rd | 2 man/logit.Rd | 2 man/lower.Rd | 11 ++ man/odds.Rd |only man/odds_ratio.Rd |only man/params.Rd | 34 +++++++ man/pextreme.Rd | 1 man/phi.Rd | 2 man/pow.Rd | 2 man/pvalue.Rd | 17 +++ man/ran_bern.Rd |only man/ran_binom.Rd |only man/ran_gamma.Rd |only man/ran_gamma_pois.Rd |only man/ran_lnorm.Rd |only man/ran_neg_binom.Rd |only man/ran_norm.Rd |only man/ran_pois.Rd |only man/res_bern.Rd |only man/res_binom.Rd |only man/res_gamma_pois.Rd |only man/res_lnorm.Rd |only man/res_neg_binom.Rd |only man/res_norm.Rd |only man/res_pois.Rd |only man/sextreme.Rd | 7 - man/skewness.Rd |only man/svalue.Rd | 15 ++- man/upper.Rd | 11 ++ man/variance.Rd |only man/xtr_mean.Rd |only man/xtr_median.Rd |only man/xtr_sd.Rd |only man/zeros.Rd |only man/zscore.Rd | 13 ++ tests/testthat/test-as-list.R | 8 + tests/testthat/test-dev.R |only tests/testthat/test-fabs.R |only tests/testthat/test-log-lik.R |only tests/testthat/test-lower.R | 2 tests/testthat/test-mean.R |only tests/testthat/test-median.R |only tests/testthat/test-moments.R |only tests/testthat/test-odds.R |only tests/testthat/test-pextreme.R | 1 tests/testthat/test-pvalue.R | 4 tests/testthat/test-ran.R |only tests/testthat/test-res.R |only tests/testthat/test-sd.R |only tests/testthat/test-sextreme.R | 1 tests/testthat/test-svalue.R | 4 tests/testthat/test-translations.R | 2 tests/testthat/test-upper.R | 2 tests/testthat/test-zeros.R |only tests/testthat/test-zscore.R | 3 111 files changed, 492 insertions(+), 119 deletions(-)
Title: An Interface to Google's 'BigQuery' 'API'
Description: Easily talk to Google's 'BigQuery' database from R.
Author: Hadley Wickham [aut, cre] (<https://orcid.org/0000-0003-4757-117X>),
Jennifer Bryan [aut] (<https://orcid.org/0000-0002-6983-2759>),
Kungliga Tekniska Högskolan [ctb] (strptime implementation),
The NetBSD Foundation, Inc. [ctb] (gmtime implementation),
RStudio [cph, fnd]
Maintainer: Hadley Wickham <hadley@rstudio.com>
Diff between bigrquery versions 1.3.2 dated 2020-10-05 and 1.4.0 dated 2021-08-05
DESCRIPTION | 51 ++--- MD5 | 76 ++++--- NAMESPACE | 1 NEWS.md | 25 ++ R/bigrquery.R | 1 R/bq-auth.R | 7 R/bq-dataset.R | 2 R/bq-download.R | 356 +++++++++++++++++++++++------------ R/bq-field.R | 2 R/bq-job.R | 2 R/bq-perform.R | 3 R/bq-project.R | 2 R/bq-projects.R | 2 R/bq-table.R | 4 R/dbi-driver.R | 4 R/dbi-result.R | 8 R/dplyr.R | 8 R/zzz.R | 5 README.md | 90 ++++---- man/api-dataset.Rd | 2 man/api-job.Rd | 2 man/api-perform.Rd | 2 man/api-project.Rd | 2 man/api-table.Rd | 4 man/bigquery.Rd | 4 man/bigrquery-package.Rd | 1 man/bq_auth.Rd | 34 ++- man/bq_field.Rd | 2 man/bq_projects.Rd | 2 man/bq_table_download.Rd | 58 +++-- man/figures |only src/BqField.cpp | 9 src/RcppExports.cpp | 5 tests/testthat/test-bq-download.R | 126 ++++++++++-- tests/testthat/test-bq-test.R | 1 tests/testthat/test-dbi-connection.R | 6 36 files changed, 598 insertions(+), 311 deletions(-)