Sun, 15 Aug 2021

Package RcppBDT updated to version 0.2.4 with previous version 0.2.3 dated 2014-04-13

Title: 'Rcpp' Bindings for the Boost Date_Time Library
Description: Access to Boost Date_Time functionality for dates, durations (both for days and date time objects), time zones, and posix time ('ptime') is provided by using 'Rcpp modules'. The posix time implementation can support high-resolution of up to nano-second precision by using 96 bits (instead of R's 64) to present a 'ptime' object (but this needs recompilation with a #define set).
Author: Dirk Eddelbuettel and Romain Francois
Maintainer: Dirk Eddelbuettel <edd@debian.org>

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Package tci updated to version 0.1.1 with previous version 0.1.0 dated 2021-02-26

Title: Target Controlled Infusion (TCI)
Description: Implementation of target-controlled infusion algorithms for compartmental pharmacokinetic and pharmacokinetic-pharmacodynamic models. Jacobs (1990) <doi:10.1109/10.43622>; Marsh et al. (1991) <doi:10.1093/bja/67.1.41>; Shafer and Gregg (1993) <doi:10.1007/BF01070999>; Schnider et al. (1998) <doi:10.1097/00000542-199805000-00006>; Abuhelwa, Foster, and Upton (2015) <doi:10.1016/j.vascn.2015.03.004>; Eleveld et al. (2018) <doi:10.1016/j.bja.2018.01.018>.
Author: Ryan Jarrett [aut, cre]
Maintainer: Ryan Jarrett <ryan.t.jarrett@vanderbilt.edu>

Diff between tci versions 0.1.0 dated 2021-02-26 and 0.1.1 dated 2021-08-15

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 tci-0.1.1/tci/DESCRIPTION                                                                                      |   11 
 tci-0.1.1/tci/MD5                                                                                              |  126 +-
 tci-0.1.1/tci/NAMESPACE                                                                                        |   14 
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 tci-0.1.1/tci/R/misc_functions.R                                                                               |    5 
 tci-0.1.1/tci/R/pd_mods.R                                                                                      |   27 
 tci-0.1.1/tci/R/pk_mods.R                                                                                      |  557 +++++++++-
 tci-0.1.1/tci/R/pkpd_assist.R                                                                                  |   75 +
 tci-0.1.1/tci/R/poppk_mods.R                                                                                   |   34 
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 tci-0.1.1/tci/R/tci_algorithms.R                                                                               |   17 
 tci-0.1.1/tci/inst/doc/open-closed-loop-control.html                                                           |   15 
 tci-0.1.1/tci/inst/doc/overview.Rmd                                                                            |    2 
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 tci-0.1.1/tci/inst/doc/user-defined-ode-pkmod.Rmd                                                              |    2 
 tci-0.1.1/tci/inst/doc/user-defined-ode-pkmod.html                                                             |   15 
 tci-0.1.1/tci/man/apply_poppk.Rd                                                                               |    5 
 tci-0.1.1/tci/man/apply_targetfn.Rd                                                                            |   20 
 tci-0.1.1/tci/man/assign_pars.Rd                                                                               |    3 
 tci-0.1.1/tci/man/bayes_control.Rd                                                                             |    4 
 tci-0.1.1/tci/man/cl_targets.Rd                                                                                |    3 
 tci-0.1.1/tci/man/cl_updates.Rd                                                                                |    4 
 tci-0.1.1/tci/man/combine_sim.Rd                                                                               |    4 
 tci-0.1.1/tci/man/create_intvl.Rd                                                                              |    4 
 tci-0.1.1/tci/man/eleveld_poppk.Rd                                                                             |   10 
 tci-0.1.1/tci/man/eleveld_vcov.Rd                                                                              |    3 
 tci-0.1.1/tci/man/elvdlpars.Rd                                                                                 |    3 
 tci-0.1.1/tci/man/emax.Rd                                                                                      |    3 
 tci-0.1.1/tci/man/emax_eleveld.Rd                                                                              |    8 
 tci-0.1.1/tci/man/format_pars.Rd                                                                               |only
 tci-0.1.1/tci/man/gen_data.Rd                                                                                  |    4 
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 tci-0.1.1/tci/man/inv_emax.Rd                                                                                  |    4 
 tci-0.1.1/tci/man/inv_emax_eleveld.Rd                                                                          |   12 
 tci-0.1.1/tci/man/log_likelihood.Rd                                                                            |    5 
 tci-0.1.1/tci/man/log_posterior_neg.Rd                                                                         |    6 
 tci-0.1.1/tci/man/log_prior.Rd                                                                                 |    4 
 tci-0.1.1/tci/man/marsh_poppk.Rd                                                                               |   24 
 tci-0.1.1/tci/man/pal.Rd                                                                                       |    3 
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 tci-0.1.1/tci/man/pkmod1cpt.Rd                                                                                 |    4 
 tci-0.1.1/tci/man/pkmod2cpt.Rd                                                                                 |    5 
 tci-0.1.1/tci/man/pkmod3cpt.Rd                                                                                 |    5 
 tci-0.1.1/tci/man/pkmod3cptm.Rd                                                                                |    5 
 tci-0.1.1/tci/man/plot.Rd                                                                                      |   16 
 tci-0.1.1/tci/man/predict.pkmod.Rd                                                                             |    4 
 tci-0.1.1/tci/man/predict_pkmod.Rd                                                                             |only
 tci-0.1.1/tci/man/restrict_sigmoid.Rd                                                                          |    8 
 tci-0.1.1/tci/man/schnider_poppk.Rd                                                                            |    9 
 tci-0.1.1/tci/man/seqby.Rd                                                                                     |    3 
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 tci-0.1.1/tci/man/tail_vec.Rd                                                                                  |    4 
 tci-0.1.1/tci/man/tci.Rd                                                                                       |    3 
 tci-0.1.1/tci/man/tci_comb.Rd                                                                                  |    3 
 tci-0.1.1/tci/man/tci_effect.Rd                                                                                |    3 
 tci-0.1.1/tci/man/tci_pd.Rd                                                                                    |    3 
 tci-0.1.1/tci/man/tci_plasma.Rd                                                                                |    3 
 tci-0.1.1/tci/src                                                                                              |only
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 tci-0.1.1/tci/vignettes/overview.Rmd                                                                           |    2 
 tci-0.1.1/tci/vignettes/user-defined-ode-pkmod.Rmd                                                             |    2 
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Package roxut updated to version 0.3.23 with previous version 0.2.40 dated 2021-04-26

Title: Document Unit Tests Roxygen-Style
Description: Much as 'roxygen2' allows one to document functions in the same file as the function itself, 'roxut' allows one to write the unit tests in the same file as the function. Once processed, the unit tests are moved to the appropriate directory. Currently supports 'testthat' and 'tinytest' frameworks. The 'roxygen2' package provides much of the infrastructure.
Author: Bryan A. Hanson [aut, cre] (<https://orcid.org/0000-0003-3536-8246>), Claudia Beleites [ctb], Hadley Wickham [aut, cph] (roxygen2 code), Peter Danenberg [aut, cph] (roxygen2 code), Gábor Csárdi [aut] (roxygen2 code), Manuel Eugster [aut, cph] (roxygen2 code), RStudio [cph] (roxygen2 code)
Maintainer: Bryan A. Hanson <hanson@depauw.edu>

Diff between roxut versions 0.2.40 dated 2021-04-26 and 0.3.23 dated 2021-08-15

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Package d3r updated to version 1.0.0 with previous version 0.9.1 dated 2020-11-20

Title: 'd3.js' Utilities for R
Description: Provides a suite of functions to help ease the use of 'd3.js' in R. These helpers include 'htmltools::htmlDependency' functions, hierarchy builders, and conversion tools for 'partykit', 'igraph,' 'table', and 'data.frame' R objects into the 'JSON' that 'd3.js' expects.
Author: Mike Bostock [aut, cph] (d3.js library in htmlwidgets/lib, http://d3js.org), Kent Russell [aut, cre, cph] (R interface), Gregor Aisch [aut, cph] (d3-jetpack creator, https://github.com/gka/d3-jetpack), Adam Pearce [aut] (core contributor to d3-jetpack), Ben Ortiz [ctb]
Maintainer: Kent Russell <kent.russell@timelyportfolio.com>

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Package clam updated to version 2.4.0 with previous version 2.3.9 dated 2021-05-11

Title: Classical Age-Depth Modelling of Cores from Deposits
Description: Performs 'classical' age-depth modelling of dated sediment deposits - prior to applying more sophisticated techniques such as Bayesian age-depth modelling. Any radiocarbon dated depths are calibrated. Age-depth models are constructed by sampling repeatedly from the dated levels, each time drawing age-depth curves. Model types include linear interpolation, linear or polynomial regression, and a range of splines. See Blaauw (2010). <doi:10.1016/j.quageo.2010.01.002>.
Author: Maarten Blaauw [aut, cre] (<https://orcid.org/0000-0002-5680-1515>), J. Andres Christen [ctb], Judith Esquivel Vazquez [ctb], Simon Goring [ctb]
Maintainer: Maarten Blaauw <maarten.blaauw@qub.ac.uk>

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Package RMVL updated to version 0.0.2.1 with previous version 0.0.1.6 dated 2021-07-18

Title: Mappable Vector Library for Handling Large Datasets
Description: Mappable vector library provides convenient way to access large datasets on solid state drives. This bypasses limitation of physical memory size as well as limited bandwidth of database interfaces. Memory mapped data can be shared between multiple R processes. Access speed depends on storage medium, so solid state drive is recommended, preferably with PCI Express (or M.2 nvme) interface. The data is memory mapped into R and then accessed using usual R list and array subscription operators. The layout of underlying MVL files is optimized for large datasets. The vectors are stored to guarantee alignment for vector intrinsics after memory map. The package is built on top of libMVL, which can be used as standalone C library. libMVL has simple C API making it easy to interchange of datasets with outside programs.
Author: Vladimir Dergachev [aut, cre] (<https://orcid.org/0000-0003-4708-6625>)
Maintainer: Vladimir Dergachev <support@altumrete.com>

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Package paws.common updated to version 0.3.12 with previous version 0.3.11 dated 2021-05-20

Title: Paws Low-Level Amazon Web Services API
Description: Functions for making low-level API requests to Amazon Web Services <https://aws.amazon.com>. The functions handle building, signing, and sending requests, and receiving responses. They are designed to help build higher-level interfaces to individual services, such as Simple Storage Service (S3).
Author: David Kretch [aut, cre], Adam Banker [aut], Amazon.com, Inc. [cph]
Maintainer: David Kretch <david.kretch@gmail.com>

Diff between paws.common versions 0.3.11 dated 2021-05-20 and 0.3.12 dated 2021-08-15

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Package profoc updated to version 0.8.3 with previous version 0.8.0 dated 2021-07-28

Title: Probabilistic Forecast Combination Using CRPS Learning
Description: Combine probabilistic forecasts using CRPS learning algorithms proposed in Berrisch, Ziel (2021) <arXiv:2102.00968>. The package implements multiple online learning algorithms like Bernstein online aggregation; see Wintenberger (2014) <arXiv:1404.1356>. Quantile regression is also implemented for comparison purposes. Model parameters can be tuned automatically with respect to the loss of the forecast combination. Methods like predict(), update(), plot() and print() are available for convenience. This package utilizes the optim C++ library for numeric optimization <https://github.com/kthohr/optim>.
Author: Jonathan Berrisch [cre] (<https://orcid.org/0000-0002-4944-9074>), Florian Ziel [aut] (<https://orcid.org/0000-0002-2974-2660>)
Maintainer: Jonathan Berrisch <Jonathan@Berrisch.biz>

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Package ggpmisc updated to version 0.4.2-1 with previous version 0.4.2 dated 2021-08-04

Title: Miscellaneous Extensions to 'ggplot2'
Description: Extensions to 'ggplot2' respecting the grammar of graphics paradigm. Statistics: locate and tag peaks and valleys; label plot with the equation of a polynomial fitted with lm() or other types of models; labels with P-value, R^2 or adjusted R^2 or information criteria for fitted models; label with ANOVA table for fitted models; label with summary for fitted models. Model fit classes for which suitable methods are provided by package 'broom' and 'broom.mixed' are supported. Scales and stats to build volcano and quadrant plots based on outcomes, fold changes, p-values and false discovery rates.
Author: Pedro J. Aphalo [aut, cre] (<https://orcid.org/0000-0003-3385-972X>), Kamil Slowikowski [ctb] (<https://orcid.org/0000-0002-2843-6370>), Samer Mouksassi [ctb] (<https://orcid.org/0000-0002-7152-6654>)
Maintainer: Pedro J. Aphalo <pedro.aphalo@helsinki.fi>

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Package scrobbler updated to version 1.0.2 with previous version 1.0.1 dated 2021-01-15

Title: Download 'Scrobbles' from 'Last.fm'
Description: 'Last.fm'<https://www.last.fm> is a music platform focussed on building a detailed profile of a users listening habits. It does this by 'scrobbling' (recording) every track you listen to on other platforms ('spotify', 'youtube', 'soundcloud' etc) and transferring them to your 'Last.fm' database. This allows 'Last.fm' to act as a complete record of your entire listening history. 'scrobbler' provides helper functions to download and analyse your listening history in R.
Author: Conor Neilson
Maintainer: Conor Neilson <condwanaland@gmail.com>

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Package inti updated to version 0.4.2 with previous version 0.4.1 dated 2021-06-25

Title: Tools and Statistical Procedures in Plant Science
Description: The 'inti' package is part of the 'inkaverse' project for developing different procedures and tools used in plant science and experimental designs. The mean aim of the package is to support researchers during the planning of experiments and data collection (tarpuy()), data analysis and graphics (yupana()) , and technical writing. Learn more about the 'inkaverse' project at <https://inkaverse.com/>.
Author: Flavio Lozano-Isla [aut, cre] (<https://orcid.org/0000-0002-0714-669X>)
Maintainer: Flavio Lozano-Isla <flavjack@gmail.com>

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 100 files changed, 34954 insertions(+), 34778 deletions(-)

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