Title: UK Flood Estimation
Description: Functions to implement the methods of the Flood Estimation Handbook (FEH), associated updates and the revitalised flood hydrograph model (ReFH). Currently the package uses NRFA peak flow dataset version 10. Aside from FEH functionality, further hydrological functions are available. Most of the methods implemented in this package are described in one or more of the following: "Flood Estimation Handbook", Centre for Ecology & Hydrology (1999, ISBN:0 948540 94 X). "Flood Estimation Handbook Supplementary Report No. 1", Kjeldsen (2007, ISBN:0 903741 15 7). "Regional Frequency Analysis - an approach based on L-moments", Hosking & Wallis (1997, ISBN: 978 0 521 01940 8). "Proposal of the extreme rank plot for extreme value analysis: with an emphasis on flood frequency studies", Hammond (2019, <doi:10.2166/nh.2019.157>). "Making better use of local data in flood frequency estimation", Environment Agency (2017, ISBN: 978 1 84911 387 8). "Improving the FEH statistical procedures for flood frequency estimation", Environment Agency (2008, ISBN: 978 1 84432 920 5). "Low flow estimation in the United Kingdom", Institute of Hydrology (1992, ISBN 0 948540 45 1). Wallingford HydroSolutions, (2016, <http://software.hydrosolutions.co.uk/winfap4/Urban-Adjustment-Procedure-Technical-Note.pdf>). Data from the UK National River Flow Archive (<https://nrfa.ceh.ac.uk/>, terms and conditions: <https://nrfa.ceh.ac.uk/costs-terms-and-conditions>.
Author: Anthony Hammond
Maintainer: Anthony Hammond <agqhammond@gmail.com>
Diff between UKFE versions 0.1.8 dated 2021-10-03 and 0.1.9 dated 2021-10-05
DESCRIPTION | 6 +++--- MD5 | 6 +++--- data/NRFAData.RData |binary data/QMEDData.RData |binary 4 files changed, 6 insertions(+), 6 deletions(-)
Title: Nonparametric Estimation of the Trend and Its Derivatives in TS
Description: The nonparametric trend and its derivatives in equidistant time
series (TS) with short-memory stationary errors can be estimated. The
estimation is conducted via local polynomial regression using an
automatically selected bandwidth obtained by a built-in iterative plug-in
algorithm or a bandwidth fixed by the user. A Nadaraya-Watson kernel
smoother is also built-in as a comparison. With version 1.1.0, a linearity
test for the trend function, forecasting methods and backtesting
approaches are implemented as well.
The smoothing methods of the package are described in Feng, Y., Gries, T.,
and Fritz, M. (2020) <doi:10.1080/10485252.2020.1759598>.
Author: Yuanhua Feng [aut] (Paderborn University, Germany),
Sebastian Letmathe [aut] (Paderborn University, Germany),
Dominik Schulz [aut, cre] (Paderborn University, Germany),
Thomas Gries [ctb] (Paderborn University, Germany),
Marlon Fritz [ctb] (Paderborn University, Germany)
Maintainer: Dominik Schulz <schulzd@mail.uni-paderborn.de>
Diff between smoots versions 1.1.1 dated 2021-09-22 and 1.1.2 dated 2021-10-05
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- NAMESPACE | 1 + NEWS.md | 7 +++++++ R/bootCast.R | 1 + tests/testthat/test_bootCast_parallel.R | 8 ++++---- 6 files changed, 21 insertions(+), 12 deletions(-)
Title: Simulate and Model Family Pedigrees with Structured Founders
Description: The focus is on simulating and modeling families with founders drawn from a structured population (for example, with different ancestries or other potentially non-family relatedness), in contrast to traditional pedigree analysis that treats all founders as equally unrelated. Main function simulates a random pedigree for many generations, avoiding close relatives, pairing closest individuals according to a 1D geography and their randomly-drawn sex, and with variable children sizes to result in a target population size per generation. Auxiliary functions calculate kinship matrices, admixture matrices, and draw random genotypes across arbitrary pedigree structures starting from the corresponding founder values. The code is built around the plink FAM table format for pedigrees. Partially described in Yao and Ochoa (2019) <doi:10.1101/858399>.
Author: Alejandro Ochoa [aut, cre] (<https://orcid.org/0000-0003-4928-3403>)
Maintainer: Alejandro Ochoa <alejandro.ochoa@duke.edu>
Diff between simfam versions 1.0.2 dated 2021-09-02 and 1.0.3 dated 2021-10-05
DESCRIPTION | 8 +++--- MD5 | 8 +++--- NEWS.md | 6 +++++ inst/doc/simfam.html | 50 ++++++++++++++++++++----------------------- tests/testthat/test-simfam.R | 2 - 5 files changed, 39 insertions(+), 35 deletions(-)
Title: Fast and Comprehensive K-Mer Counting Package
Description: A fast implementation of k-mer (subsequences of length k) counting with the support for all types of biological sequences and k-mer variants.
Author: Jadwiga Słowik [aut, cre] (<https://orcid.org/0000-0003-3466-8933>),
Michał Burdukiewicz [ths] (<https://orcid.org/0000-0001-8926-582X>)
Maintainer: Jadwiga Słowik <jadwiga.slowik5@gmail.com>
Diff between seqR versions 1.0.0 dated 2021-09-15 and 1.0.1 dated 2021-10-05
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- README.md | 9 +++++++-- inst/doc/features-overview.html | 8 ++++---- src/gapped_kmer_counter.h | 3 +-- 5 files changed, 20 insertions(+), 16 deletions(-)
Title: Simulate Agricultural Production and Evolution of Pesticide
Resistance
Description: Simulates individual-based models of agricultural pest management
and the evolution of pesticide resistance. Management occurs on a spatially
explicit landscape that is divided into an arbitrary number of farms that
can grow one of up to 10 crops and apply one of up to 10 pesticides. Pest
genomes are modelled in a way that allows for any number of pest traits with
an arbitrary covariance structure that is constructed using an evolutionary
algorithm in the mine_gmatrix() function. Simulations are then run using the
run_farm_sim() function. This package thereby allows for highly mechanistic
social-ecological models of the evolution of pesticide resistance under
different types of crop rotation and pesticide application regimes.
Author: A. Bradley Duthie [aut, cre] (<https://orcid.org/0000-0001-8343-4995>),
Rose McKeon [aut, ctr],
Rosie Mangan [ctr],
Luc Bussiére [ctr],
Matthew Tinsley [ctr]
Maintainer: A. Bradley Duthie <brad.duthie@gmail.com>
Diff between resevol versions 0.2.0.2 dated 2021-09-22 and 0.2.0.8 dated 2021-10-05
DESCRIPTION | 9 +++---- MD5 | 16 ++++++------- README.md | 3 ++ inst/doc/evolutionary_algorithm.html | 42 +++++++++++++++++------------------ src/land_change.c | 16 ++++++------- src/mine_gmatrix.c | 2 + src/parents.c | 2 - src/pesticide.c | 2 - src/reproduction.c | 14 +++++------ 9 files changed, 55 insertions(+), 51 deletions(-)
Title: Simulation Methods for Legislative Redistricting
Description: Enables researchers to sample redistricting plans from a pre-specified
target distribution using Sequential Monte Carlo and Markov Chain Monte Carlo
algorithms. The package allows for the implementation of various constraints in
the redistricting process such as geographic compactness and population parity
requirements. Tools for analysis such as computation of various summary statistics
and plotting functionality are also included. The package implements methods
described in Fifield, Higgins, Imai and Tarr (2020) <doi:10.1080/10618600.2020.1739532>,
Fifield, Imai, Kawahara, and Kenny (2020) <doi:10.1080/2330443X.2020.1791773>,
and McCartan and Imai (2020) <arXiv:2008.06131>.
Author: Christopher T. Kenny [aut, cre],
Cory McCartan [aut],
Ben Fifield [aut],
Kosuke Imai [aut],
Jun Kawahara [ctb],
Alexander Tarr [ctb],
Michael Higgins [ctb]
Maintainer: Christopher T. Kenny <christopherkenny@fas.harvard.edu>
Diff between redist versions 3.1.4 dated 2021-09-19 and 3.1.5 dated 2021-10-05
ChangeLog | 6 DESCRIPTION | 8 MD5 | 516 +- NAMESPACE | 560 +- NEWS.md | 93 R/RcppExports.R | 486 - R/adjacency.R | 240 R/calcstats.R | 148 R/classify_compare.R | 648 +- R/compactness.R | 1084 ++-- R/competitiveness.R | 62 R/constraint_helpers.R | 484 - R/cores.R | 248 R/counties.R | 172 R/crsg.R | 228 R/data.R | 390 - R/distances.R | 402 - R/enumpart.R | 724 +- R/filler_generics.R | 338 - R/findtarget.R | 124 R/freeze.R | 198 R/generics.R | 68 R/group_percent.R | 104 R/metrics.R | 480 - R/parity.R | 128 R/pick_a_plan.R | 234 R/plot_cores.R | 118 R/plot_diagnostics.R | 342 - R/plot_interactive.R | 198 R/plot_majmin.R | 122 R/plot_map.R | 706 +- R/plot_penalty.R | 110 R/plot_plans.R | 686 +- R/plot_varinfo.R | 152 R/pop_overlap.R | 350 - R/random_subgraph.R | 194 R/redist-package.R | 94 R/redist-preproc.R | 1068 ++-- R/redist-smc.R | 378 - R/redistMPI.R | 1826 +++---- R/redist_findparams.R | 890 +-- R/redist_flip_tidy.R | 902 +-- R/redist_map.R | 1162 ++-- R/redist_mcmc.R | 2396 ++++----- R/redist_ms.R | 254 R/redist_ms_parallel.R | 412 - R/redist_ms_tidy.R | 500 - R/redist_plans.R | 840 +-- R/redist_shortburst.R | 1058 ++-- R/redist_smc_tidy.R | 646 +- R/reindex.R | 138 R/rsg.R | 250 R/skinny_flips.R | 124 R/splits.R | 294 - R/subset.R | 134 R/tidy.R | 1208 ++-- build/vignette.rds |binary data/datalist | 12 inst/CITATION | 28 inst/doc/glossary.R | 160 inst/doc/glossary.Rmd | 380 - inst/doc/glossary.html | 712 +- inst/doc/map-preproc.R | 248 inst/doc/map-preproc.Rmd | 646 +- inst/doc/map-preproc.html | 858 +-- inst/doc/mcmc.R | 432 - inst/doc/mcmc.Rmd | 956 +-- inst/doc/mcmc.html | 1514 ++--- inst/doc/mpi-slurm.R | 290 - inst/doc/mpi-slurm.Rmd | 452 - inst/doc/mpi-slurm.html | 746 +- inst/doc/redist.R | 150 inst/doc/redist.Rmd | 774 +-- inst/doc/redist.html | 1016 +-- inst/enumpart/BigInteger.hpp | 1090 ++-- inst/enumpart/ComponentRatioSpec.hpp | 856 +-- inst/enumpart/ComponentWeightSpec.hpp | 776 +-- inst/enumpart/Graph.hpp | 1350 ++--- inst/enumpart/GraphPartitionSpec.hpp | 1218 ++-- inst/enumpart/GraphPartitionSpecL31.hpp | 900 +-- inst/enumpart/RandomSample.hpp | 248 inst/enumpart/SAPPOROBDD/BDD.cc | 1036 ++-- inst/enumpart/SAPPOROBDD/ZBDD.cc | 2176 ++++---- inst/enumpart/SAPPOROBDD/ZBDD.h | 532 +- inst/enumpart/SAPPOROBDD/bddc.c | 5678 +++++++++++----------- inst/enumpart/SAPPOROBDD/bddc.h | 316 - inst/enumpart/SBDD_helper.h | 5884 +++++++++++------------ inst/enumpart/enumpart.cpp | 1182 ++-- inst/enumpart/grid2x2.dat | 8 inst/enumpart/grid2x2_v.dat | 2 inst/enumpart/tdzdd/DdEval.hpp | 288 - inst/enumpart/tdzdd/DdSpec.hpp | 1322 ++--- inst/enumpart/tdzdd/DdSpecOp.hpp | 342 - inst/enumpart/tdzdd/DdStructure.hpp | 1498 ++--- inst/enumpart/tdzdd/dd/DataTable.hpp | 390 - inst/enumpart/tdzdd/dd/DdBuilder.hpp | 3056 +++++------ inst/enumpart/tdzdd/dd/DdReducer.hpp | 1236 ++-- inst/enumpart/tdzdd/dd/DdSweeper.hpp | 340 - inst/enumpart/tdzdd/dd/DepthFirstSearcher.hpp | 228 inst/enumpart/tdzdd/dd/Node.hpp | 420 - inst/enumpart/tdzdd/dd/NodeTable.hpp | 988 +-- inst/enumpart/tdzdd/dd/PathCounter.hpp | 918 +-- inst/enumpart/tdzdd/eval/Cardinality.hpp | 424 - inst/enumpart/tdzdd/eval/ToZBDD.hpp | 134 inst/enumpart/tdzdd/op/BinaryOperation.hpp | 1132 ++-- inst/enumpart/tdzdd/op/Lookahead.hpp | 390 - inst/enumpart/tdzdd/op/Unreduction.hpp | 290 - inst/enumpart/tdzdd/spec/DegreeConstraint.hpp | 300 - inst/enumpart/tdzdd/spec/FrontierBasedSearch.hpp | 972 +-- inst/enumpart/tdzdd/spec/LinearConstraints.hpp | 326 - inst/enumpart/tdzdd/spec/SapporoZdd.hpp | 178 inst/enumpart/tdzdd/spec/SizeConstraint.hpp | 140 inst/enumpart/tdzdd/util/BigNumber.hpp | 746 +- inst/enumpart/tdzdd/util/Graph.hpp | 1358 ++--- inst/enumpart/tdzdd/util/IntSubset.hpp | 140 inst/enumpart/tdzdd/util/MemoryPool.hpp | 476 - inst/enumpart/tdzdd/util/MessageHandler.hpp | 542 +- inst/enumpart/tdzdd/util/MyHashTable.hpp | 1234 ++-- inst/enumpart/tdzdd/util/MyList.hpp | 1178 ++-- inst/enumpart/tdzdd/util/MySet.hpp | 1162 ++-- inst/enumpart/tdzdd/util/MyVector.hpp | 1118 ++-- inst/enumpart/tdzdd/util/ResourceUsage.hpp | 394 - inst/enumpart/tdzdd/util/demangle.hpp | 198 inst/enumpart/testGP.hpp | 434 - inst/python/ndscut.py | 828 +-- man/add_reference.Rd | 50 man/as.matrix.redist.Rd | 38 man/classify_plans.Rd | 60 man/compare_plans.Rd | 176 man/fl25.Rd | 88 man/fl250.Rd | 86 man/fl25_adj.Rd | 50 man/fl25_enum.Rd | 76 man/fl70.Rd | 86 man/flip_constraints_helper.Rd | 166 man/get_adj.Rd | 50 man/get_existing.Rd | 36 man/get_mh_acceptance_rate.Rd | 36 man/get_plans_matrix.Rd | 50 man/get_plans_weights.Rd | 54 man/get_pop_tol.Rd | 52 man/get_sampling_info.Rd | 36 man/get_target.Rd | 36 man/imp_confint.Rd | 56 man/iowa.Rd | 76 man/is_contiguous.Rd | 36 man/is_county_split.Rd | 42 man/last_plan.Rd | 36 man/match_numbers.Rd | 66 man/merge_by.Rd | 66 man/number_by.Rd | 52 man/persily.Rd | 60 man/pick_a_plan.Rd | 86 man/plans_diversity.Rd | 70 man/plot.redist_classified.Rd | 58 man/plot.redist_map.Rd | 104 man/plot.redist_plans.Rd | 46 man/prec_assignment.Rd | 40 man/prec_cooccurrence.Rd | 50 man/print.redist.Rd | 38 man/print.redist_classified.Rd | 38 man/pullback.Rd | 42 man/rbind.redist_plans.Rd | 48 man/redist-package.Rd | 66 man/redist.adjacency.Rd | 38 man/redist.calc.frontier.size.Rd | 64 man/redist.coarsen.adjacency.Rd | 40 man/redist.combine.Rd | 194 man/redist.combine.anneal.Rd | 112 man/redist.combine.mpi.Rd | 174 man/redist.compactness.Rd | 344 - man/redist.competitiveness.Rd | 86 man/redist.constraint.helper.Rd | 82 man/redist.county.id.Rd | 48 man/redist.county.relabel.Rd | 62 man/redist.crsg.Rd | 146 man/redist.diagplot.Rd | 170 man/redist.dist.pop.overlap.Rd | 110 man/redist.distances.Rd | 138 man/redist.enumpart.Rd | 116 man/redist.find.target.Rd | 56 man/redist.findparams.Rd | 244 man/redist.flip.Rd | 508 - man/redist.flip.anneal.Rd | 298 - man/redist.freeze.Rd | 90 man/redist.group.percent.Rd | 98 man/redist.identify.cores.Rd | 120 man/redist.init.enumpart.Rd | 52 man/redist.ipw.Rd | 222 man/redist.mcmc.mpi.Rd | 392 - man/redist.metrics.Rd | 216 man/redist.multisplits.Rd | 54 man/redist.parity.Rd | 86 man/redist.plot.adj.Rd | 100 man/redist.plot.cores.Rd | 50 man/redist.plot.distr_qtys.Rd | 108 man/redist.plot.hist.Rd | 82 man/redist.plot.interactive.Rd | 78 man/redist.plot.majmin.Rd | 44 man/redist.plot.map.Rd | 110 man/redist.plot.penalty.Rd | 90 man/redist.plot.plans.Rd | 76 man/redist.plot.scatter.Rd | 84 man/redist.plot.varinfo.Rd | 48 man/redist.prec.pop.overlap.Rd | 110 man/redist.prep.enumpart.Rd | 94 man/redist.prep.polsbypopper.Rd | 60 man/redist.random.subgraph.Rd | 48 man/redist.read.enumpart.Rd | 66 man/redist.reduce.adjacency.Rd | 50 man/redist.reorder.Rd | 52 man/redist.rsg.Rd | 166 man/redist.run.enumpart.Rd | 116 man/redist.segcalc.Rd | 130 man/redist.sink.plan.Rd | 58 man/redist.smc_is_ci.Rd | 50 man/redist.splits.Rd | 56 man/redist.subset.Rd | 76 man/redist.uncoarsen.Rd | 44 man/redist_flip.Rd | 462 - man/redist_map.Rd | 170 man/redist_mergesplit.Rd | 448 - man/redist_mergesplit_parallel.Rd | 396 - man/redist_plans.Rd | 124 man/redist_quantile_trunc.Rd | 42 man/redist_shortburst.Rd | 212 man/redist_smc.Rd | 526 +- man/reexports.Rd | 32 man/scorer-arith.Rd | 60 man/scorers.Rd | 186 man/subset_sampled.Rd | 44 tests/testthat.R | 8 tests/testthat/setup.R | 28 tests/testthat/test_adj.R | 38 tests/testthat/test_burst.R | 16 tests/testthat/test_compactness.R | 114 tests/testthat/test_competitiveness.R | 16 tests/testthat/test_constraint_helpers.R | 16 tests/testthat/test_crsg.R | 26 tests/testthat/test_enumpart.R | 236 tests/testthat/test_freeze.R | 76 tests/testthat/test_group-pct.R | 48 tests/testthat/test_mcmc.R | 160 tests/testthat/test_meas.R | 66 tests/testthat/test_metrics.R | 108 tests/testthat/test_ms.R | 68 tests/testthat/test_parity.R | 30 tests/testthat/test_plots.R | 58 tests/testthat/test_redist_map.R | 92 tests/testthat/test_redist_plans.R | 130 tests/testthat/test_rsg.R | 22 tests/testthat/test_skinny_flips.R | 26 tests/testthat/test_smc.R | 181 tests/testthat/test_tidy_meas.R | 44 vignettes/glossary.Rmd | 380 - vignettes/map-preproc.Rmd | 646 +- vignettes/mcmc.Rmd | 956 +-- vignettes/mpi-slurm.Rmd | 452 - vignettes/redist.Rmd | 774 +-- 259 files changed, 49900 insertions(+), 49896 deletions(-)
Title: Pseudo-Likelihood Estimation of Log-Multiplicative Association
Models
Description: Log-multiplicative association models (LMA) are
models for cross-classifications of categorical variables
where interactions are represented by products of category
scale values and an association parameter. Maximum
likelihood estimation (MLE) fails for moderate to large
numbers of categorical variables. The 'pleLMA' package
overcomes this limitation of MLE by using pseudo-likelihood
estimation to fit the models to small or large
cross-classifications dichotomous or multi-category variables.
Originally proposed by Besag (1974,
<doi:10.1111/j.2517-6161.1974.tb00999.x>), pseudo-likelihood
estimation takes large complex models and breaks it down
into smaller ones. Rather than maximizing the likelihood
of the joint distribution of all the variables, a
pseudo-likelihood function, which is the product likelihoods
from conditional distributions, is maximized. LMA models can
be derived from a number of different frameworks including
(but not limited to) graphical models and uni-dimensional
and multi-dimensional item response theory models. More
details about the models and estimation can be found in
the vignette.
Author: Carolyn J. Anderson
Maintainer: Carolyn J. Anderson <cja@illinois.edu>
Diff between pleLMA versions 0.1.1 dated 2021-05-21 and 0.2.1 dated 2021-10-05
pleLMA-0.1.1/pleLMA/R/ScaleItem.R |only pleLMA-0.1.1/pleLMA/R/summaryModel.R |only pleLMA-0.1.1/pleLMA/inst/REFERENCES.bib |only pleLMA-0.1.1/pleLMA/man/ScaleItem.Rd |only pleLMA-0.1.1/pleLMA/man/summaryModel.Rd |only pleLMA-0.1.1/pleLMA/vignettes/pandoc2c04408f2a35.html |only pleLMA-0.2.1/pleLMA/DESCRIPTION | 10 pleLMA-0.2.1/pleLMA/MD5 | 77 -- pleLMA-0.2.1/pleLMA/NAMESPACE | 2 pleLMA-0.2.1/pleLMA/NEWS |only pleLMA-0.2.1/pleLMA/R/ItemGPCM_data.R | 5 pleLMA-0.2.1/pleLMA/R/ItemLoop.R | 44 - pleLMA-0.2.1/pleLMA/R/Scale.R | 2 pleLMA-0.2.1/pleLMA/R/convergence.stats.R | 6 pleLMA-0.2.1/pleLMA/R/fitStack.R | 28 pleLMA-0.2.1/pleLMA/R/fitStackGPCM.R | 5 pleLMA-0.2.1/pleLMA/R/fit_gpcm.R | 62 - pleLMA-0.2.1/pleLMA/R/fit_independence.R | 34 pleLMA-0.2.1/pleLMA/R/fit_nominal.R | 74 +- pleLMA-0.2.1/pleLMA/R/fit_rasch.R | 64 + pleLMA-0.2.1/pleLMA/R/item_gpcm.R | 18 pleLMA-0.2.1/pleLMA/R/lma_summary.R | 10 pleLMA-0.2.1/pleLMA/R/ple_lma.R | 67 - pleLMA-0.2.1/pleLMA/R/set_up.R | 6 pleLMA-0.2.1/pleLMA/inst/doc/pleLMA_vignette.R | 8 pleLMA-0.2.1/pleLMA/inst/doc/pleLMA_vignette.Rmd | 81 +- pleLMA-0.2.1/pleLMA/inst/doc/pleLMA_vignette.html | 623 ++++++++--------- pleLMA-0.2.1/pleLMA/man/ItemLoop.Rd | 2 pleLMA-0.2.1/pleLMA/man/Scale.Rd | 2 pleLMA-0.2.1/pleLMA/man/convergence.stats.Rd | 4 pleLMA-0.2.1/pleLMA/man/fit.gpcm.Rd | 4 pleLMA-0.2.1/pleLMA/man/fit.independence.Rd | 2 pleLMA-0.2.1/pleLMA/man/fit.nominal.Rd | 14 pleLMA-0.2.1/pleLMA/man/fit.rasch.Rd | 11 pleLMA-0.2.1/pleLMA/man/item.gpcm.Rd | 2 pleLMA-0.2.1/pleLMA/man/ple.lma.Rd | 7 pleLMA-0.2.1/pleLMA/man/set.up.Rd | 2 pleLMA-0.2.1/pleLMA/tests/testthat/test_gpcm.R | 13 pleLMA-0.2.1/pleLMA/tests/testthat/test_independence.R | 2 pleLMA-0.2.1/pleLMA/tests/testthat/test_nominal.R | 7 pleLMA-0.2.1/pleLMA/tests/testthat/test_rasch.R | 8 pleLMA-0.2.1/pleLMA/vignettes/pleLMA_vignette.Rmd | 81 +- pleLMA-0.2.1/pleLMA/vignettes/pleLMA_vignette.bib | 20 43 files changed, 740 insertions(+), 667 deletions(-)
Title: Bayesian Regression with Meshed Gaussian Processes
Description: Fits Bayesian spatial or spatiotemporal multivariate regression models based on latent Meshed Gaussian Processes (MGP) as described in Peruzzi, Banerjee, Finley (2020) <doi:10.1080/01621459.2020.1833889> and Peruzzi, Banerjee, Dunson, and Finley (2021) <arXiv:2101.03579>. Funded by ERC grant 856506 and NIH grant R01ES028804.
Author: Michele Peruzzi
Maintainer: Michele Peruzzi <michele.peruzzi@duke.edu>
Diff between meshed versions 0.1.2 dated 2021-06-22 and 0.1.3 dated 2021-10-05
DESCRIPTION | 8 +++--- MD5 | 24 +++++++++--------- NEWS.md | 6 ++++ build/partial.rdb |binary build/vignette.rds |binary inst/doc/multivariate_irregular.html | 12 ++++----- inst/doc/univariate_gridded.html | 12 ++++----- inst/doc/univariate_irregular.html | 12 ++++----- inst/doc/univariate_irregular_poisson.html | 12 ++++----- src/RcppExports.cpp | 5 +++ src/mcmc_hmc_nodes.cpp | 8 +++--- src/mcmc_ramadapt.h | 2 - src/meshed_mcmc.cpp | 38 ++++++++++++----------------- 13 files changed, 72 insertions(+), 67 deletions(-)
Title: Efficient Simulation-Based Power and Sample Size Calculations
for a Broad Class of Late-Stage Clinical Trials
Description: The following modules are included in the package:
Adaptive designs with data-driven sample size or event count re-estimation,
Adaptive designs with data-driven treatment selection,
Adaptive designs with data-driven population selection,
Optimal selection of a futility stopping rule,
Event prediction in event-driven trials,
Adaptive trials with response-adaptive randomization (experimental module),
Traditional trials with multiple objectives (experimental module).
Author: Alex Dmitrienko [aut, cre]
Maintainer: Alex Dmitrienko <admitrienko@mediana.us>
Diff between MedianaDesigner versions 0.3 dated 2021-09-20 and 0.4 dated 2021-10-05
MedianaDesigner-0.3/MedianaDesigner/src/meddebug.h |only MedianaDesigner-0.4/MedianaDesigner/CHANGELOG | 8 MedianaDesigner-0.4/MedianaDesigner/DESCRIPTION | 12 MedianaDesigner-0.4/MedianaDesigner/MD5 | 71 ++--- MedianaDesigner-0.4/MedianaDesigner/R/ADPopSel.r | 5 MedianaDesigner-0.4/MedianaDesigner/R/ADRand.r | 40 ++- MedianaDesigner-0.4/MedianaDesigner/R/ADSSMod.r | 4 MedianaDesigner-0.4/MedianaDesigner/R/ADTreatSel.r | 89 +++++- MedianaDesigner-0.4/MedianaDesigner/R/EventPred.r | 2 MedianaDesigner-0.4/MedianaDesigner/R/FutRule.r | 51 --- MedianaDesigner-0.4/MedianaDesigner/R/MultAdj.r | 26 + MedianaDesigner-0.4/MedianaDesigner/data/EventPredData.RData |binary MedianaDesigner-0.4/MedianaDesigner/inst/ADPopSelApp/ui.r | 9 MedianaDesigner-0.4/MedianaDesigner/inst/ADRandApp/server.r | 6 MedianaDesigner-0.4/MedianaDesigner/inst/ADSSModApp/ui.r | 6 MedianaDesigner-0.4/MedianaDesigner/inst/ADTreatSelApp/server.r | 8 MedianaDesigner-0.4/MedianaDesigner/inst/ADTreatSelApp/ui.r | 23 - MedianaDesigner-0.4/MedianaDesigner/inst/EventPredApp/ui.r | 7 MedianaDesigner-0.4/MedianaDesigner/inst/FutRuleApp/server.r | 43 --- MedianaDesigner-0.4/MedianaDesigner/inst/FutRuleApp/ui.r | 34 -- MedianaDesigner-0.4/MedianaDesigner/inst/MultAdjApp/server.r | 4 MedianaDesigner-0.4/MedianaDesigner/inst/MultAdjApp/ui.r | 4 MedianaDesigner-0.4/MedianaDesigner/man/ADRand.Rd | 3 MedianaDesigner-0.4/MedianaDesigner/man/ADTreatSel.Rd | 8 MedianaDesigner-0.4/MedianaDesigner/man/ADTreatSelExample1.Rd | 8 MedianaDesigner-0.4/MedianaDesigner/man/ADTreatSelExample2.Rd | 10 MedianaDesigner-0.4/MedianaDesigner/man/ADTreatSelExample3.Rd | 8 MedianaDesigner-0.4/MedianaDesigner/man/MedianaDesigner-package.Rd | 10 MedianaDesigner-0.4/MedianaDesigner/man/MultAdj.Rd | 4 MedianaDesigner-0.4/MedianaDesigner/src/md.cpp | 131 ++++++---- MedianaDesigner-0.4/MedianaDesigner/src/meddist.h | 2 MedianaDesigner-0.4/MedianaDesigner/src/medmult.h | 62 +++- MedianaDesigner-0.4/MedianaDesigner/tests/testthat/test-ADPopSel.r | 6 MedianaDesigner-0.4/MedianaDesigner/tests/testthat/test-ADRand.r | 9 MedianaDesigner-0.4/MedianaDesigner/tests/testthat/test-ADTreatSel.r | 100 ++++++- MedianaDesigner-0.4/MedianaDesigner/tests/testthat/test-EventPred.r | 21 + MedianaDesigner-0.4/MedianaDesigner/tests/testthat/test-MultAdj.r | 51 +-- 37 files changed, 539 insertions(+), 346 deletions(-)
More information about MedianaDesigner at CRAN
Permanent link
Title: Utilities for Making and Plotting Mazes
Description: Functionality for generating and plotting random mazes. The mazes are based on matrices, so can only consist of vertical and horizontal lines along a regular grid. But there is no need to use every possible space, so they can take on many different shapes.
Author: Kelly Street [aut, cre] (<https://orcid.org/0000-0001-6379-5013>)
Maintainer: Kelly Street <street.kelly@gmail.com>
Diff between mazing versions 1.0.2 dated 2021-06-02 and 1.0.5 dated 2021-10-05
DESCRIPTION | 9 +-- MD5 | 32 +++++----- R/paths.R | 33 ++++++++--- R/plotting.R | 66 ++++++++++++++++++++-- README.md | 4 + build/vignette.rds |binary inst/doc/inspiration.R | 10 +++ inst/doc/inspiration.Rmd | 16 +++++ inst/doc/inspiration.html | 129 ++++++++++++++++++++++++------------------- inst/logo.R | 6 +- inst/mazing.png |binary man/find_maze_refpoint.Rd | 14 +++- man/plot.maze.Rd | 26 ++++++++ man/solve_maze.Rd | 10 ++- tests/testthat/Rplots.pdf |binary tests/testthat/test-mazing.R | 34 +++++++++++ vignettes/inspiration.Rmd | 16 +++++ 17 files changed, 304 insertions(+), 101 deletions(-)
Title: R at the Command-Line via 'r'
Description: A scripting and command-line front-end
is provided by 'r' (aka 'littler') as a lightweight binary wrapper around
the GNU R language and environment for statistical computing and graphics.
While R can be used in batch mode, the r binary adds full support for
both 'shebang'-style scripting (i.e. using a hash-mark-exclamation-path
expression as the first line in scripts) as well as command-line use in
standard Unix pipelines. In other words, r provides the R language without
the environment.
Author: Dirk Eddelbuettel and Jeff Horner
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between littler versions 0.3.13 dated 2021-07-24 and 0.3.14 dated 2021-10-05
ChangeLog | 33 +++++++++++++++++++++++++++++++++ DESCRIPTION | 11 ++++++----- MD5 | 23 ++++++++++++----------- build/vignette.rds |binary configure | 18 +++++++++--------- configure.ac | 16 +++++++--------- inst/NEWS.Rd | 30 +++++++++++++++++++++++------- inst/doc/littler-examples.html | 2 +- inst/examples/getQuartoCli.r |only inst/examples/getRStudioDesktop.r | 10 ++++++---- inst/examples/getRStudioServer.r | 11 +++++++---- inst/examples/roxy.r | 10 ++++++++-- src/config.h.in | 22 +++++----------------- 13 files changed, 117 insertions(+), 69 deletions(-)
Title: Evaluation of Proximity Programs
Description: A toolbox for coverage evaluation of proximity programs.
Author: Richard Detomasi [aut, cre] (<https://orcid.org/0000-0002-6725-0261>),
German Botto [aut] (<https://orcid.org/0000-0002-4055-9277>)
Maintainer: Richard Detomasi <richard.detomasi@gmail.com>
Diff between EPP versions 0.3.2 dated 2021-08-05 and 0.3.3 dated 2021-10-05
DESCRIPTION | 11 MD5 | 47 NAMESPACE | 8 NEWS.md | 13 R/assign_clust.R | 6 R/assign_nn.R |only R/byosrmRoute.R | 38 R/clust_it.R | 5 R/data.R | 14 R/epp.R | 9 R/leafepp.R | 117 R/osrm_matrixby100.R | 68 README.md | 37 data/labels_es.rda |only man/assign_nn.Rd |only man/byosrmRoute.Rd | 24 man/centers.Rd | 32 man/figures/logo_text.svg | 4108 +++++++++++++++---------------- man/figures/logo_text_b.svg | 4124 ++++++++++++++++---------------- man/labels_es.Rd |only man/leafepp.Rd | 74 man/osrm_matrixby100.Rd | 27 man/pop.Rd | 32 tests/testthat/test-assign_nn.R |only tests/testthat/test-assignation_exist.R | 2 tests/testthat/test-leafepp.R | 5 tests/testthat/test-osrm_matrixby100.R | 4 27 files changed, 4492 insertions(+), 4313 deletions(-)
Title: MBSTS Models for Causal Inference and Forecasting
Description: Infers the causal effect of an intervention on a multivariate response through the use of Multivariate
Bayesian Structural Time Series models (MBSTS) as described in Menchetti & Bojinov (2020) <arXiv:2006.12269>.
The package also includes functions for model building and forecasting.
Author: Iavor Bojinov [aut],
Fiammetta Menchetti [aut, cre],
Victoria L. Prince [ctb],
Ista Zahn [ctb]
Maintainer: Fiammetta Menchetti <fiammetta.menchetti@gmail.com>
Diff between CausalMBSTS versions 0.1.0 dated 2020-11-03 and 0.1.1 dated 2021-10-05
DESCRIPTION | 9 MD5 | 9 NEWS.md |only build/vignette.rds |binary inst/doc/CausalMBSTS.html | 471 ++++++++------------------------------ tests/testthat/test-CausalMBSTS.R | 4 6 files changed, 121 insertions(+), 372 deletions(-)
Title: Alternating Manifold Proximal Gradient Method for Sparse PCA
Description: Alternating Manifold Proximal Gradient Method for Sparse PCA uses the Alternating Manifold Proximal
Gradient (AManPG) method to find sparse principal components from a data or covariance matrix. Provides
a novel algorithm for solving the sparse principal component analysis problem which provides
advantages over existing methods in terms of efficiency and convergence guarantees.
Chen, S., Ma, S., Xue, L., & Zou, H. (2020) <doi:10.1287/ijoo.2019.0032>.
Zou, H., Hastie, T., & Tibshirani, R. (2006) <doi:10.1198/106186006X113430>.
Zou, H., & Xue, L. (2018) <doi:10.1109/JPROC.2018.2846588>.
Author: Shixiang Chen [aut],
Justin Huang [aut],
Benjamin Jochem [aut],
Shiqian Ma [aut],
Lingzhou Xue [cre, aut],
Hui Zou [aut]
Maintainer: Lingzhou Xue <lzxue@psu.edu>
Diff between amanpg versions 0.3.2 dated 2021-10-02 and 0.3.3 dated 2021-10-05
DESCRIPTION | 12 +++++++----- MD5 | 4 ++-- inst/doc/An-Introduction-to-amanpg.pdf |binary 3 files changed, 9 insertions(+), 7 deletions(-)
Title: Wizardry Code Offensive Programming
Description: Allows to turn standard R code into offensive programming code.
Provides code instrumentation to ease this change and tools to assist and
accelerate code production and tuning while using offensive programming code
technics.
Should improve code robustness and quality. Function calls can be easily
verified on-demand or in batch mode to assess parameter types and length
conformities.
Should improve coders productivity as offensive programming reduces the code
size due to reduced number of controls all along the call chain.
Should speed up processing as many checks will be reduced to one single check.
Author: Fabien Gelineau <neonira@gmail.com>
Maintainer: Fabien Gelineau <neonira@gmail.com>
Diff between wyz.code.offensiveProgramming versions 1.1.18 dated 2020-04-19 and 1.1.23 dated 2021-10-05
wyz.code.offensiveProgramming-1.1.18/wyz.code.offensiveProgramming/inst/doc/release.R |only wyz.code.offensiveProgramming-1.1.18/wyz.code.offensiveProgramming/inst/doc/release.Rmd |only wyz.code.offensiveProgramming-1.1.18/wyz.code.offensiveProgramming/inst/doc/release.html |only wyz.code.offensiveProgramming-1.1.18/wyz.code.offensiveProgramming/vignettes/release.Rmd |only wyz.code.offensiveProgramming-1.1.18/wyz.code.offensiveProgramming/vignettes/vignette-common.R |only wyz.code.offensiveProgramming-1.1.23/wyz.code.offensiveProgramming/DESCRIPTION | 15 +-- wyz.code.offensiveProgramming-1.1.23/wyz.code.offensiveProgramming/MD5 | 27 +++--- wyz.code.offensiveProgramming-1.1.23/wyz.code.offensiveProgramming/NAMESPACE | 1 wyz.code.offensiveProgramming-1.1.23/wyz.code.offensiveProgramming/R/FunctionParameterTypeFactory.R | 16 +++ wyz.code.offensiveProgramming-1.1.23/wyz.code.offensiveProgramming/R/matchFunctionArguments.R | 17 +++- wyz.code.offensiveProgramming-1.1.23/wyz.code.offensiveProgramming/build/partial.rdb |binary wyz.code.offensiveProgramming-1.1.23/wyz.code.offensiveProgramming/build/vignette.rds |binary wyz.code.offensiveProgramming-1.1.23/wyz.code.offensiveProgramming/inst/doc/release-notes.R |only wyz.code.offensiveProgramming-1.1.23/wyz.code.offensiveProgramming/inst/doc/release-notes.Rmd |only wyz.code.offensiveProgramming-1.1.23/wyz.code.offensiveProgramming/inst/doc/release-notes.html |only wyz.code.offensiveProgramming-1.1.23/wyz.code.offensiveProgramming/inst/extdata |only wyz.code.offensiveProgramming-1.1.23/wyz.code.offensiveProgramming/man/retrievePackageFunctionNames.Rd | 4 wyz.code.offensiveProgramming-1.1.23/wyz.code.offensiveProgramming/vignettes/common-style.R |only wyz.code.offensiveProgramming-1.1.23/wyz.code.offensiveProgramming/vignettes/release-notes.Rmd |only wyz.code.offensiveProgramming-1.1.23/wyz.code.offensiveProgramming/vignettes/style.css | 41 ++++++---- 20 files changed, 78 insertions(+), 43 deletions(-)
More information about wyz.code.offensiveProgramming at CRAN
Permanent link
Title: Collection of Household Survey Packages Conducted by IBGE
Description: Provides access to packages developed for downloading, reading and analysing microdata
from household surveys conducted by Brazilian Institute of Geography and Statistics - IBGE.
More information can be obtained from the official website <https://www.ibge.gov.br/>.
Author: Gabriel Assuncao [aut, cre],
Luna Hidalgo [aut],
Douglas Braga [ctb]
Maintainer: Gabriel Assuncao <pacotesipd@ibge.gov.br>
Diff between SIPDIBGE versions 0.1.4 dated 2021-06-24 and 0.1.5 dated 2021-10-05
DESCRIPTION | 16 ++++++++-------- MD5 | 30 +++++++++++++++--------------- NAMESPACE | 1 - NEWS.md | 4 ++-- R/sipd_conflicts.R | 6 +++--- R/sipd_deps.R | 6 +++--- R/sipd_logo.R | 4 ++-- R/sipd_packages.R | 4 ++-- R/sipd_sitrep.R | 10 +++++----- R/sipd_update.R | 4 ++-- man/sipd_conflicts.Rd | 4 ++-- man/sipd_deps.Rd | 4 ++-- man/sipd_logo.Rd | 2 +- man/sipd_packages.Rd | 2 +- man/sipd_sitrep.Rd | 8 ++++---- man/sipd_update.Rd | 2 +- 16 files changed, 53 insertions(+), 54 deletions(-)
Title: Making Census Data More Usable
Description: Creates a common framework for organizing, naming, and gathering population, age, race, and ethnicity data from the Census Bureau. Accesses the API <https://www.census.gov/data/developers/data-sets.html> via the package tidycensus. Provides tools for adding information to existing data to line up with Census data.
Author: Christopher T. Kenny [aut, cre]
(<https://orcid.org/0000-0002-9386-6860>)
Maintainer: Christopher T. Kenny <christopherkenny@fas.harvard.edu>
Diff between censable versions 0.0.2 dated 2021-07-29 and 0.0.3 dated 2021-10-05
DESCRIPTION | 10 - LICENSE | 4 MD5 | 85 ++++----- NAMESPACE | 130 +++++++-------- NEWS.md |only R/add_r_environ.R | 4 R/build_acs.R | 339 +++++++++++++++++++-------------------- R/build_dec.R | 354 +++++++++++++++++++++-------------------- R/collapse.R | 10 - R/data.R | 5 R/geoid.R | 7 R/helpers.R | 2 R/memoise.R | 14 + R/recode.R | 24 +- R/utils-pipe.R | 28 +-- README.md | 150 ++++++++--------- data/fips_2020.rda |binary man/add_r_environ.Rd | 72 ++++---- man/build_acs.Rd | 218 ++++++++++++------------- man/build_dec.Rd | 210 ++++++++++++------------ man/fips_2000.Rd | 1 man/fips_2010.Rd | 1 man/fips_2020.Rd | 1 man/join_name_abb.Rd | 48 ++--- man/match_abb.Rd | 44 ++--- man/match_fips.Rd | 44 ++--- man/mt_county.Rd | 1 man/pipe.Rd | 40 ++-- man/recode_abb_ansi.Rd | 48 ++--- man/recode_abb_fips.Rd | 48 ++--- man/recode_abb_name.Rd | 48 ++--- man/recode_ansi_abb.Rd | 48 ++--- man/recode_ansi_fips.Rd | 48 ++--- man/recode_fips_abb.Rd | 48 ++--- man/recode_fips_ansi.Rd | 48 ++--- man/recode_fips_name.Rd | 48 ++--- man/recode_name_abb.Rd | 48 ++--- man/recode_name_ansi.Rd | 48 ++--- man/recode_name_fips.Rd | 48 ++--- man/stata.Rd | 53 +++--- man/tidyeval.Rd | 102 +++++------ tests/testthat/test-collapse.R | 12 - tests/testthat/test-geoid.R | 8 tests/testthat/test-match.R | 8 44 files changed, 1287 insertions(+), 1270 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-09-13 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-09-15 1.0.6
2021-09-13 1.0.5
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-09-17 1.1.7
2021-09-13 1.1.5
2021-01-11 1.1.2
2020-09-17 1.1.1
2020-08-13 0.1.8
2020-05-04 0.1.7
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-07-13 1.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-09-14 0.3.7
2021-08-01 0.3.6
2021-06-20 0.3.5
2021-05-01 0.3.4
2021-04-12 0.3.3
2021-02-26 0.3.2
2021-02-16 0.3.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-09-06 1.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-09-20 0.3-0
2021-02-24 0.2-1
2020-03-30 0.2-0
2019-10-02 0.1-1
2019-08-19 0.1-0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-10-03 0.0.2
2021-02-16 0.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-09-28 0.0.10
2020-04-19 0.0.8
2016-10-25 0.0.7
2016-08-14 0.0.4
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-09-20 2.0.0
2021-01-10 1.3.0
2020-11-25 1.1.0
2020-09-20 0.15.0
2020-07-02 0.12.1
2020-07-01 0.12.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-11-04 1.0.1
Title: A Collection of Methods for Singular Spectrum Analysis
Description: Methods and tools for Singular Spectrum Analysis including decomposition,
forecasting and gap-filling for univariate and multivariate time series.
General description of the methods with many examples can be found in the book
Golyandina (2018, <doi:10.1007/978-3-662-57380-8>).
See 'citation("Rssa")' for details.
Author: Anton Korobeynikov, Alex Shlemov, Konstantin Usevich, Nina Golyandina
Maintainer: Anton Korobeynikov <anton@korobeynikov.info>
Diff between Rssa versions 1.0.3 dated 2020-11-19 and 1.0.4 dated 2021-10-05
DESCRIPTION | 6 +++--- MD5 | 6 +++--- configure | 18 +++++++++--------- configure.ac | 8 +++----- 4 files changed, 18 insertions(+), 20 deletions(-)
Title: Robust Linear Quantile Regression
Description: It fits a robust linear quantile regression model using a new family of zero-quantile distributions for the error term. Missing values and censored observations can be handled as well. This family of distribution includes skewed versions of the Normal, Student's t, Laplace, Slash and Contaminated Normal distribution. It also performs logistic quantile regression for bounded responses as shown in Galarza et.al.(2020) <doi:10.1007/s13571-020-00231-0>. It provides estimates and full inference. It also provides envelopes plots for assessing the fit and confidences bands when several quantiles are provided simultaneously.
Author: Christian E. Galarza <chedgala@espol.edu.ec>, Luis Benites <lbenitess@pucp.edu.pe>, Marcelo Bourguignon <m.p.bourguignon@gmail.com>, Victor H. Lachos <hlachos@uconn.edu>
Maintainer: Christian E. Galarza <cgalarza88@gmail.com>
Diff between lqr versions 3.43 dated 2021-03-22 and 4.0 dated 2021-10-05
DESCRIPTION | 18 ++++++------------ MD5 | 6 +++--- R/pdqr.R | 48 +++++++++++++++++++++++++++++++++++++++++++----- build/partial.rdb |binary 4 files changed, 52 insertions(+), 20 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-05-21 0.8.1
2015-05-28 0.8
2014-02-11 0.7.1
2014-02-10 0.7
2012-09-20 0.5-3
2012-06-21 0.5-2
2012-01-25 0.5
2012-01-14 0.4
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-09-13 2021.9-12
2020-09-11 2020.9-10
2020-05-21 2020.5-21
2020-05-02 2020.5-1
2018-08-20 2018.8-20
2017-12-03 2017.12-3
2016-07-31 2016.7-31
2016-07-26 2016.7-26
2015-03-04 2015.3-3
2014-11-08 14.11-8
2014-11-02 14.10-31
2013-12-01 13.12-01
2013-07-21 0.3-4
2013-07-16 0.3-3
2013-07-14 0.3-2
2013-07-13 0.3-1
2013-06-21 0.2-1
2013-05-10 0.1-1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-06-06 0.5.1
2019-02-07 0.5
2018-12-05 0.4.1
2018-10-14 0.4
2018-06-07 0.3
2018-04-24 0.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-04-24 0.8
2017-10-15 0.7
2017-03-31 0.6
2016-08-01 0.5
2016-05-04 0.3.2
2015-10-09 0.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-02-20 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-01-08 0.3.1
2020-05-28 0.2.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-07-25 0.9.8.4
2020-03-04 0.9.8.3
2019-07-08 0.9.8.2
2019-03-17 0.9.8.1
2019-02-10 0.9.8
2018-10-30 0.9.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-11-15 0.1.1
2018-11-14 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-04-01 3.1.1.1
2019-01-08 3.1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-07-09 1.0.2
Title: Download 'nflverse' Data
Description: A low-level package for downloading data from 'GitHub'
repositories of the 'nflverse' project.
Author: Tan Ho [aut, cre, cph] (<https://orcid.org/0000-0001-8388-5155>),
Sebastian Carl [aut],
John Edwards [ctb],
Ben Baldwin [ctb],
Thomas Mock [ctb],
Lee Sharpe [ctb]
Maintainer: Tan Ho <tan@tanho.ca>
Diff between nflreadr versions 1.1.0 dated 2021-09-02 and 1.1.1 dated 2021-10-05
nflreadr-1.1.0/nflreadr/R/nflreadr-package.R |only nflreadr-1.1.1/nflreadr/DESCRIPTION | 10 nflreadr-1.1.1/nflreadr/MD5 | 67 nflreadr-1.1.1/nflreadr/NAMESPACE | 6 nflreadr-1.1.1/nflreadr/NEWS.md | 16 nflreadr-1.1.1/nflreadr/R/data.R | 56 nflreadr-1.1.1/nflreadr/R/from_url.R | 27 nflreadr-1.1.1/nflreadr/R/load_ffverse.R | 15 nflreadr-1.1.1/nflreadr/R/load_nflverse.R | 51 nflreadr-1.1.1/nflreadr/R/name_cleaning.R |only nflreadr-1.1.1/nflreadr/R/utils.R | 11 nflreadr-1.1.1/nflreadr/README.md | 1298 ---------- nflreadr-1.1.1/nflreadr/data/player_name_mapping.rda |only nflreadr-1.1.1/nflreadr/data/team_abbr_mapping.rda |only nflreadr-1.1.1/nflreadr/data/team_abbr_mapping_norelocate.rda |only nflreadr-1.1.1/nflreadr/inst/doc/dictionary_nextgen_stats.R | 13 nflreadr-1.1.1/nflreadr/inst/doc/dictionary_nextgen_stats.Rmd | 12 nflreadr-1.1.1/nflreadr/inst/doc/dictionary_nextgen_stats.html | 336 ++ nflreadr-1.1.1/nflreadr/inst/doc/dictionary_pbp.html | 4 nflreadr-1.1.1/nflreadr/inst/doc/dictionary_pfr_passing.R | 13 nflreadr-1.1.1/nflreadr/inst/doc/dictionary_pfr_passing.Rmd | 12 nflreadr-1.1.1/nflreadr/inst/doc/dictionary_pfr_passing.html | 166 + nflreadr-1.1.1/nflreadr/inst/doc/dictionary_player_stats.html | 4 nflreadr-1.1.1/nflreadr/inst/doc/dictionary_rosters.html | 4 nflreadr-1.1.1/nflreadr/inst/doc/dictionary_schedules.html | 4 nflreadr-1.1.1/nflreadr/man/clean_homeaway.Rd |only nflreadr-1.1.1/nflreadr/man/clean_player_names.Rd |only nflreadr-1.1.1/nflreadr/man/clean_team_abbrs.Rd |only nflreadr-1.1.1/nflreadr/man/load_ff_rankings.Rd | 5 nflreadr-1.1.1/nflreadr/man/load_pfr_advstats.Rd |only nflreadr-1.1.1/nflreadr/man/nflreadr-package.Rd | 2 nflreadr-1.1.1/nflreadr/man/player_name_mapping.Rd |only nflreadr-1.1.1/nflreadr/man/progressively.Rd | 4 nflreadr-1.1.1/nflreadr/man/team_abbr_mapping.Rd |only nflreadr-1.1.1/nflreadr/man/team_abbr_mapping_norelocate.Rd |only nflreadr-1.1.1/nflreadr/tests/testthat/test-ffverse.R | 10 nflreadr-1.1.1/nflreadr/tests/testthat/test-from_url.R | 1 nflreadr-1.1.1/nflreadr/tests/testthat/test-name_cleaning.R |only nflreadr-1.1.1/nflreadr/tests/testthat/test-nflverse.R | 19 nflreadr-1.1.1/nflreadr/vignettes/dictionary_nextgen_stats.Rmd | 12 nflreadr-1.1.1/nflreadr/vignettes/dictionary_pfr_passing.Rmd | 12 41 files changed, 754 insertions(+), 1436 deletions(-)
Title: Analysis of NCES Education Survey and Assessment Data
Description: Read in and analyze functions for education survey and assessment data from the National Center for Education Statistics (NCES) <https://nces.ed.gov/>, including National Assessment of Educational Progress (NAEP) data <https://nces.ed.gov/nationsreportcard/> and data from the International Assessment Database: Organisation for Economic Co-operation and Development (OECD) <https://www.oecd.org/>, including Programme for International Student Assessment (PISA), Teaching and Learning International Survey (TALIS), Programme for the International Assessment of Adult Competencies (PIAAC), and International Association for the Evaluation of Educational Achievement (IEA) <https://www.iea.nl/>, including Trends in International Mathematics and Science Study (TIMSS), TIMSS Advanced, Progress in International Reading Literacy Study (PIRLS), International Civic and Citizenship Study (ICCS), International Computer and Information Literacy Study (ICILS), and Civic Education Study (CivEd).
Author: Paul Bailey [aut, cre],
Ahmad Emad [aut],
Huade Huo [aut],
Michael Lee [aut],
Yuqi Liao [aut],
Alex Lishinski [aut],
Trang Nguyen [aut],
Qingshu Xie [aut],
Jiao Yu [aut],
Ting Zhang [aut],
Eric Buehler [aut],
person("Sun-joo", "Lee", role="aut"),
person("Emmanuel", "Sikali", role="pdr", email = "Emmanuel.Sikali@ed.gov")),
Jeppe Bundsgaard [ctb],
Ren C'deBaca [ctb],
Anders Astrup Christensen [ctb]
Maintainer: Paul Bailey <pbailey@air.org>
Diff between EdSurvey versions 2.7.0 dated 2021-07-19 and 2.7.1 dated 2021-10-05
EdSurvey-2.7.0/EdSurvey/R/readBB_2001.R |only EdSurvey-2.7.0/EdSurvey/R/readBB_2003.R |only EdSurvey-2.7.0/EdSurvey/R/readBB_2012.R |only EdSurvey-2.7.0/EdSurvey/R/readBPS_1994.R |only EdSurvey-2.7.0/EdSurvey/R/readBPS_2001.R |only EdSurvey-2.7.0/EdSurvey/R/readBPS_2009.R |only EdSurvey-2.7.0/EdSurvey/R/readBPS_2014.R |only EdSurvey-2.7.0/EdSurvey/R/readNLS72.R |only EdSurvey-2.7.0/EdSurvey/inst/suggestWeights |only EdSurvey-2.7.0/EdSurvey/man/examples/readBB_2001.R |only EdSurvey-2.7.0/EdSurvey/man/examples/readBB_2003.R |only EdSurvey-2.7.0/EdSurvey/man/examples/readBB_2012.R |only EdSurvey-2.7.0/EdSurvey/man/examples/readBPS_1994.R |only EdSurvey-2.7.0/EdSurvey/man/examples/readBPS_2001.R |only EdSurvey-2.7.0/EdSurvey/man/examples/readBPS_2009.R |only EdSurvey-2.7.0/EdSurvey/man/examples/readBPS_2014.R |only EdSurvey-2.7.0/EdSurvey/man/examples/suggestWeights.R |only EdSurvey-2.7.0/EdSurvey/man/readBB_2001.Rd |only EdSurvey-2.7.0/EdSurvey/man/readBB_2003.Rd |only EdSurvey-2.7.0/EdSurvey/man/readBB_2012.Rd |only EdSurvey-2.7.0/EdSurvey/man/readBPS_1994.Rd |only EdSurvey-2.7.0/EdSurvey/man/readBPS_2001.Rd |only EdSurvey-2.7.0/EdSurvey/man/readBPS_2009.Rd |only EdSurvey-2.7.0/EdSurvey/man/readBPS_2014.Rd |only EdSurvey-2.7.0/EdSurvey/man/readNLS72.Rd |only EdSurvey-2.7.0/EdSurvey/tests/testthat/REF-01-linking.R |only EdSurvey-2.7.0/EdSurvey/tests/testthat/test-80-mvrlm.R |only EdSurvey-2.7.1/EdSurvey/DESCRIPTION | 9 EdSurvey-2.7.1/EdSurvey/MD5 | 151 +- EdSurvey-2.7.1/EdSurvey/NAMESPACE | 8 EdSurvey-2.7.1/EdSurvey/R/achievementLevels.R | 4 EdSurvey-2.7.1/EdSurvey/R/all.R | 15 EdSurvey-2.7.1/EdSurvey/R/cacheMetaReqUpdate.R | 25 EdSurvey-2.7.1/EdSurvey/R/cor.sdf.R | 15 EdSurvey-2.7.1/EdSurvey/R/descriptionOfFile.R | 91 - EdSurvey-2.7.1/EdSurvey/R/downloadNHES.R |only EdSurvey-2.7.1/EdSurvey/R/downloadSSOCS.R |only EdSurvey-2.7.1/EdSurvey/R/edsurvey.data.frame.R | 23 EdSurvey-2.7.1/EdSurvey/R/edsurvey.data.frame.list.R | 175 +- EdSurvey-2.7.1/EdSurvey/R/edsurveyTable.R | 17 EdSurvey-2.7.1/EdSurvey/R/gap.R | 6 EdSurvey-2.7.1/EdSurvey/R/getData.R | 43 EdSurvey-2.7.1/EdSurvey/R/glm.sdf.R | 22 EdSurvey-2.7.1/EdSurvey/R/lm.sdf.R | 24 EdSurvey-2.7.1/EdSurvey/R/nhesTable.R |only EdSurvey-2.7.1/EdSurvey/R/print.edsurvey.data.frame.R | 2 EdSurvey-2.7.1/EdSurvey/R/readNAEP.r | 392 +++++- EdSurvey-2.7.1/EdSurvey/R/readNHES.R |only EdSurvey-2.7.1/EdSurvey/R/readPISA.R | 1 EdSurvey-2.7.1/EdSurvey/R/readSSOCS.R |only EdSurvey-2.7.1/EdSurvey/R/readTIMSS.R | 6 EdSurvey-2.7.1/EdSurvey/R/readUTILS.R | 594 +++++----- EdSurvey-2.7.1/EdSurvey/R/rq.sdf.R | 7 EdSurvey-2.7.1/EdSurvey/R/searchSDF.R | 34 EdSurvey-2.7.1/EdSurvey/R/showCutPoints.R | 10 EdSurvey-2.7.1/EdSurvey/R/summary2.R | 35 EdSurvey-2.7.1/EdSurvey/R/utilities.R | 30 EdSurvey-2.7.1/EdSurvey/R/waldTest.R | 50 EdSurvey-2.7.1/EdSurvey/R/zzz.R | 3 EdSurvey-2.7.1/EdSurvey/inst/NEWS.Rd | 30 EdSurvey-2.7.1/EdSurvey/inst/doc/introduction.Rmd | 2 EdSurvey-2.7.1/EdSurvey/inst/doc/introduction.html | 20 EdSurvey-2.7.1/EdSurvey/inst/extdata/NAEP_AL.rds |only EdSurvey-2.7.1/EdSurvey/inst/extdata/NHES_FileLookup.rds |only EdSurvey-2.7.1/EdSurvey/inst/extdata/SSOCS_FileLookup.rds |only EdSurvey-2.7.1/EdSurvey/inst/extdata/SSOCS_ValueLabels.rds |only EdSurvey-2.7.1/EdSurvey/man/SD.Rd | 24 EdSurvey-2.7.1/EdSurvey/man/downloadNHES.Rd |only EdSurvey-2.7.1/EdSurvey/man/downloadSSOCS.Rd |only EdSurvey-2.7.1/EdSurvey/man/edsurvey-class.Rd | 2 EdSurvey-2.7.1/EdSurvey/man/edsurvey.data.frame.list.Rd | 18 EdSurvey-2.7.1/EdSurvey/man/examples/SD.R | 3 EdSurvey-2.7.1/EdSurvey/man/examples/downloadNHES.R |only EdSurvey-2.7.1/EdSurvey/man/examples/downloadSSOCS.R |only EdSurvey-2.7.1/EdSurvey/man/examples/edsurvey.data.frame.list.R | 12 EdSurvey-2.7.1/EdSurvey/man/examples/getNHES_SurveyInfo.R |only EdSurvey-2.7.1/EdSurvey/man/examples/readNAEP.R | 4 EdSurvey-2.7.1/EdSurvey/man/examples/readNHES.R |only EdSurvey-2.7.1/EdSurvey/man/examples/readSSOCS.R |only EdSurvey-2.7.1/EdSurvey/man/examples/viewNHES_SurveyCodes.R |only EdSurvey-2.7.1/EdSurvey/man/getNHES_SurveyInfo.Rd |only EdSurvey-2.7.1/EdSurvey/man/readNAEP.Rd | 4 EdSurvey-2.7.1/EdSurvey/man/readNHES.Rd |only EdSurvey-2.7.1/EdSurvey/man/readSSOCS.Rd |only EdSurvey-2.7.1/EdSurvey/man/showCutPoints.Rd | 4 EdSurvey-2.7.1/EdSurvey/man/viewNHES_SurveyCodes.Rd |only EdSurvey-2.7.1/EdSurvey/tests/testthat/REF-0-main.R | 41 EdSurvey-2.7.1/EdSurvey/tests/testthat/REF-12-SSOCS.R |only EdSurvey-2.7.1/EdSurvey/tests/testthat/REF-2-esdfl.R | 30 EdSurvey-2.7.1/EdSurvey/tests/testthat/REF-5-piaac.R | 30 EdSurvey-2.7.1/EdSurvey/tests/testthat/gap_main_SD.rds |binary EdSurvey-2.7.1/EdSurvey/tests/testthat/gddat.rds |binary EdSurvey-2.7.1/EdSurvey/tests/testthat/test-10-main.R | 94 + EdSurvey-2.7.1/EdSurvey/tests/testthat/test-20-esdfl.R | 12 EdSurvey-2.7.1/EdSurvey/tests/testthat/test-27-SSOCS.R |only EdSurvey-2.7.1/EdSurvey/tests/testthat/test-30-TIMSS.R | 24 EdSurvey-2.7.1/EdSurvey/tests/testthat/test-51-YAFS.R | 4 EdSurvey-2.7.1/EdSurvey/tests/testthat/test-60-ECLS_K.R | 8 EdSurvey-2.7.1/EdSurvey/tests/testthat/test-70-mixed.R | 3 EdSurvey-2.7.1/EdSurvey/tests/testthat_tests.R | 1 EdSurvey-2.7.1/EdSurvey/vignettes/introduction.Rmd | 2 101 files changed, 1347 insertions(+), 817 deletions(-)
Title: TK Rplot
Description: Simple mechanism for placing R graphics in a Tk widget.
Author: Luke Tierney <luke-tierney@uiowa.edu>
Maintainer: Luke Tierney <luke-tierney@uiowa.edu>
Diff between tkrplot versions 0.0-25 dated 2021-02-05 and 0.0-26 dated 2021-10-05
DESCRIPTION | 6 MD5 | 6 configure | 6251 ++++++++++++++++++----------------------------------------- configure.ac | 17 4 files changed, 1997 insertions(+), 4283 deletions(-)
Title: Less Code, More Results
Description: Each function accomplishes the work of several or more standard R functions. For example, two function calls, Read() and CountAll(), read the data and generate summary statistics for all variables in the data frame, plus histograms and bar charts as appropriate. Other functions provide for descriptive statistics, a comprehensive regression analysis, analysis of variance and t-test, plotting including the introduced here Violin/Box/Scatter plot for a numerical variable, bar chart, histogram, box plot, density curves, calibrated power curve, reading multiple data formats with the same function call, variable labels, color themes, Trellis graphics and a built-in help system. Also includes a confirmatory factor analysis of multiple indicator measurement models, pedagogical routines for data simulation such as for the Central Limit Theorem, and generation and rendering of R markdown instructions for interpretative output.
Author: David Gerbing, The School of Business, Portland State University
Maintainer: David W. Gerbing <gerbing@pdx.edu>
Diff between lessR versions 4.0.3 dated 2021-09-09 and 4.0.5 dated 2021-10-05
DESCRIPTION | 8 - MD5 | 92 +++++++------- NEWS | 54 ++++++++ R/ANOVA.R | 10 - R/ANOVAz1.R | 41 +++--- R/BarChart.R | 10 + R/Plot.R | 35 ++--- R/Regression.R | 2 R/bc.zmain.R | 50 ++----- R/dn.zmain.R | 3 R/dpmat.zmain.R | 14 +- R/hst.zmain.R | 3 R/lc.zmain.R | 3 R/logit.z4Pred.R | 2 R/pivot.R | 36 ++++- R/plt.zlattice.R | 35 +++-- R/plt.zmain.R | 64 ++++++--- R/plt.ztxt.R | 68 +++++----- R/reg.z3resfitResidual.R | 2 R/reg.z5Plot.R | 2 R/reg.zRmd.R | 22 +-- R/style.R | 6 R/ttp2zgraph.R | 2 R/values.R | 1 R/zzz.R | 31 ++-- inst/doc/BarChart.html | 4 inst/doc/Customize.html | 12 - inst/doc/Extract.html | 18 +- inst/doc/Histogram.html | 2 inst/doc/Means.html | 8 - inst/doc/Plot.R | 8 - inst/doc/Plot.Rmd | 68 +++++----- inst/doc/Plot.html | 299 ++++++++++++++++++++++------------------------ inst/doc/Proportions.Rmd | 2 inst/doc/Proportions.html | 2 inst/doc/Regression.html | 42 +++--- inst/doc/Time.html | 18 +- inst/doc/pivot.R | 14 +- inst/doc/pivot.Rmd | 102 ++++++++------- inst/doc/pivot.html | 203 ++++++++++++++++--------------- inst/doc/utilities.html | 16 +- man/ANOVA.Rd | 20 ++- man/BarChart.Rd | 5 man/Plot.Rd | 9 + vignettes/Plot.Rmd | 68 +++++----- vignettes/Proportions.Rmd | 2 vignettes/pivot.Rmd | 102 ++++++++------- 47 files changed, 897 insertions(+), 723 deletions(-)
Title: Spreadsheet Interface for Relational Databases
Description: Use 'SQLite3' as a database system via a complete SQL free R interface, treating the data as if it was a single spreadsheet.
Author: Benjamin Becker [aut, cre]
Maintainer: Benjamin Becker <b.becker@iqb.hu-berlin.de>
Diff between eatDB versions 0.4.1 dated 2020-07-17 and 0.5.0 dated 2021-10-05
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- NEWS.md | 5 +++++ R/04_DB_pulls.R | 11 ++++++++++- R/sqlite_keywords.R | 22 ++++++++++------------ README.md | 4 ++-- man/dbPull.Rd | 2 +- man/sqlite_keywords.Rd | 3 --- tests/testthat/test_04_pullDB.R | 10 ++++++---- 9 files changed, 46 insertions(+), 35 deletions(-)
Title: Methods and Tools for Bayesian Dynamic Conditional Correlation
GARCH(1,1) Model
Description: Bayesian estimation of dynamic conditional correlation GARCH model for multivariate time series volatility (Fioruci, J.A., Ehlers, R.S. and Andrade-Filho, M.G., (2014). <doi:10.1080/02664763.2013.839635>.
Author: Jose Augusto Fiorucci [aut, cre, cph]
(<https://orcid.org/0000-0002-1201-9089>),
Ricardo Sanders Ehlers [aut, cph]
(<https://orcid.org/0000-0001-9034-5173>),
Francisco Louzada [aut, cph] (<https://orcid.org/0000-0001-7815-9554>)
Maintainer: Jose Augusto Fiorucci <jafiorucci@gmail.com>
Diff between bayesDccGarch versions 2.2 dated 2021-04-07 and 3.0.3 dated 2021-10-05
bayesDccGarch-2.2/bayesDccGarch/data/DaxCacNik.txt.gz |only bayesDccGarch-3.0.3/bayesDccGarch/ChangeLog | 13 bayesDccGarch-3.0.3/bayesDccGarch/DESCRIPTION | 28 bayesDccGarch-3.0.3/bayesDccGarch/MD5 | 24 bayesDccGarch-3.0.3/bayesDccGarch/NAMESPACE | 6 bayesDccGarch-3.0.3/bayesDccGarch/R/mainFunctions.R | 499 ++++++---- bayesDccGarch-3.0.3/bayesDccGarch/README.md |only bayesDccGarch-3.0.3/bayesDccGarch/data/DaxCacNik.txt |only bayesDccGarch-3.0.3/bayesDccGarch/man/DaxCacNik.Rd | 12 bayesDccGarch-3.0.3/bayesDccGarch/man/bayesDccGarch-package.Rd | 16 bayesDccGarch-3.0.3/bayesDccGarch/man/bayesDccGarch.Rd | 58 - bayesDccGarch-3.0.3/bayesDccGarch/man/plot.bayesDccGarch.Rd | 86 - bayesDccGarch-3.0.3/bayesDccGarch/man/plotVol.Rd | 7 bayesDccGarch-3.0.3/bayesDccGarch/man/predict.bayesDccGarch.Rd |only bayesDccGarch-3.0.3/bayesDccGarch/src/bayesDccGarch.c | 472 ++++----- 15 files changed, 683 insertions(+), 538 deletions(-)
Title: A Computational Tool for Astrochronology
Description: Routines for astrochronologic testing, astronomical time scale construction, and time series analysis <doi:10.1016/j.earscirev.2018.11.015>. Also included are a range of statistical analysis and modeling routines that are relevant to time scale development and paleoclimate analysis.
Author: Stephen Meyers [aut,cre], Alberto Malinverno [ctb], Linda Hinnov [ctb], Christian Zeeden [ctb], Huaran Liu [ctb], Vincent Moron [ctb]
Maintainer: Stephen Meyers <smeyers@geology.wisc.edu>
Diff between astrochron versions 1.0 dated 2021-02-11 and 1.1 dated 2021-10-05
astrochron-1.0/astrochron/R/FUNCTION-anchorTime_v4.R |only astrochron-1.0/astrochron/R/FUNCTION-autoPlot_v12.R |only astrochron-1.0/astrochron/R/FUNCTION-eAsm_v3.R |only astrochron-1.0/astrochron/R/FUNCTION-eTimeOpt_v8.R |only astrochron-1.0/astrochron/R/FUNCTION-eha_v22.R |only astrochron-1.0/astrochron/R/FUNCTION-imbrie_v5.R |only astrochron-1.0/astrochron/R/FUNCTION-integratePower_v9.R |only astrochron-1.0/astrochron/R/FUNCTION-peak_v6a.R |only astrochron-1.0/astrochron/R/FUNCTION-plotEha_v5.R |only astrochron-1.0/astrochron/R/FUNCTION-read_v33.R |only astrochron-1.0/astrochron/R/FUNCTION-slideCor_v9.R |only astrochron-1.0/astrochron/R/FUNCTION-testBackground_v8.R |only astrochron-1.0/astrochron/R/FUNCTION-timeOptTemplate_v24.R |only astrochron-1.0/astrochron/R/FUNCTION-traceFreq_v7.R |only astrochron-1.0/astrochron/R/FUNCTION-tracePeak_v2.R |only astrochron-1.0/astrochron/R/FUNCTION-trackFreq_v9.R |only astrochron-1.0/astrochron/R/FUNCTION-trackPeak_v2.R |only astrochron-1.0/astrochron/R/FUNCTION-trough_v2a.R |only astrochron-1.1/astrochron/DESCRIPTION | 16 - astrochron-1.1/astrochron/MD5 | 125 +++++++------ astrochron-1.1/astrochron/NAMESPACE | 11 + astrochron-1.1/astrochron/NEWS | 28 ++ astrochron-1.1/astrochron/R/FUNCTION-anchorTime_v4a.R |only astrochron-1.1/astrochron/R/FUNCTION-autoPlot_v13.R |only astrochron-1.1/astrochron/R/FUNCTION-bioturb_v2.R |only astrochron-1.1/astrochron/R/FUNCTION-conv_fft.R |only astrochron-1.1/astrochron/R/FUNCTION-deconv.R |only astrochron-1.1/astrochron/R/FUNCTION-eAsm_v4.R |only astrochron-1.1/astrochron/R/FUNCTION-eTimeOpt_v9.R |only astrochron-1.1/astrochron/R/FUNCTION-eha_v23.R |only astrochron-1.1/astrochron/R/FUNCTION-imbrie_v7a.R |only astrochron-1.1/astrochron/R/FUNCTION-impulseResponse.R |only astrochron-1.1/astrochron/R/FUNCTION-integratePower_v10.R |only astrochron-1.1/astrochron/R/FUNCTION-mwStatsGrid_v4.R |only astrochron-1.1/astrochron/R/FUNCTION-mwinGrid_v2.R |only astrochron-1.1/astrochron/R/FUNCTION-peak_v7.R |only astrochron-1.1/astrochron/R/FUNCTION-periodogram_v16.R | 5 astrochron-1.1/astrochron/R/FUNCTION-plotEha_v6.R |only astrochron-1.1/astrochron/R/FUNCTION-read_v34.R |only astrochron-1.1/astrochron/R/FUNCTION-slideCor_v14.R |only astrochron-1.1/astrochron/R/FUNCTION-testBackground_v8a.R |only astrochron-1.1/astrochron/R/FUNCTION-timeOptSimPwrLaw_v4.R |only astrochron-1.1/astrochron/R/FUNCTION-timeOptTemplate_v25.R |only astrochron-1.1/astrochron/R/FUNCTION-timeOpt_v16.R | 2 astrochron-1.1/astrochron/R/FUNCTION-traceFreq_v8.R |only astrochron-1.1/astrochron/R/FUNCTION-tracePeak_v3.R |only astrochron-1.1/astrochron/R/FUNCTION-trackFreq_v10.R |only astrochron-1.1/astrochron/R/FUNCTION-trackPeak_v3.R |only astrochron-1.1/astrochron/R/FUNCTION-trough_v3.R |only astrochron-1.1/astrochron/R/FUNCTION-unbioturb_v3.R |only astrochron-1.1/astrochron/R/startupMessage.R | 4 astrochron-1.1/astrochron/man/anchorTime.Rd | 2 astrochron-1.1/astrochron/man/ar1etp.Rd | 4 astrochron-1.1/astrochron/man/astrochron-package.Rd | 31 ++- astrochron-1.1/astrochron/man/autoPlot.Rd | 6 astrochron-1.1/astrochron/man/bioturb.Rd |only astrochron-1.1/astrochron/man/conv_fft.Rd |only astrochron-1.1/astrochron/man/deconv.Rd |only astrochron-1.1/astrochron/man/eAsm.Rd | 7 astrochron-1.1/astrochron/man/eTimeOpt.Rd | 4 astrochron-1.1/astrochron/man/eha.Rd | 4 astrochron-1.1/astrochron/man/imbrie.Rd | 2 astrochron-1.1/astrochron/man/impulseResponse.Rd |only astrochron-1.1/astrochron/man/integratePower.Rd | 5 astrochron-1.1/astrochron/man/linage.Rd | 4 astrochron-1.1/astrochron/man/mwStats.Rd | 2 astrochron-1.1/astrochron/man/mwStatsGrid.Rd |only astrochron-1.1/astrochron/man/mwinGrid.Rd |only astrochron-1.1/astrochron/man/peak.Rd | 3 astrochron-1.1/astrochron/man/plotEha.Rd | 20 +- astrochron-1.1/astrochron/man/pwrLawFit.Rd | 10 - astrochron-1.1/astrochron/man/slideCor.Rd | 16 + astrochron-1.1/astrochron/man/stepHeat.Rd | 4 astrochron-1.1/astrochron/man/testBackground.Rd | 8 astrochron-1.1/astrochron/man/testPrecession.Rd | 4 astrochron-1.1/astrochron/man/testTilt.Rd | 4 astrochron-1.1/astrochron/man/timeOptPlot.Rd | 4 astrochron-1.1/astrochron/man/timeOptSim.Rd | 4 astrochron-1.1/astrochron/man/timeOptSimPwrLaw.Rd |only astrochron-1.1/astrochron/man/timeOptTemplate.Rd | 2 astrochron-1.1/astrochron/man/traceFreq.Rd | 11 - astrochron-1.1/astrochron/man/tracePeak.Rd | 7 astrochron-1.1/astrochron/man/trackFreq.Rd | 8 astrochron-1.1/astrochron/man/trackPeak.Rd | 7 astrochron-1.1/astrochron/man/trough.Rd | 3 astrochron-1.1/astrochron/man/unbioturb.Rd |only astrochron-1.1/astrochron/man/wtMean.Rd | 4 astrochron-1.1/astrochron/src/Impulse_Response.c |only astrochron-1.1/astrochron/src/Root_Search.c |only astrochron-1.1/astrochron/src/init.c | 17 + astrochron-1.1/astrochron/src/mwinGrid_R.f |only 91 files changed, 260 insertions(+), 138 deletions(-)
Title: Provides a Link Between the 'Refinitiv Datastream' System and R
Description: Provides a set of functions and a class to connect, extract and
upload information from the 'Refinitiv Datastream' database. This
package uses the 'DSWS' API and server used by the 'Datastream DFO addin'.
Details of this API are available at <https://www.refinitiv.com/en>.
Please report issues at <https://github.com/CharlesCara/DatastreamDSWS2R/issues>.
Author: Charles Cara
Maintainer: Charles Cara <charles.cara@absolute-strategy.com>
Diff between DatastreamDSWS2R versions 1.7.9 dated 2020-11-25 and 1.8.2 dated 2021-10-05
DESCRIPTION | 13 MD5 | 58 NEWS.md | 89 R/UCTSUpload.R | 910 ++--- R/classConstructor.R | 3409 +++++++++---------- README.md | 322 - man/UCTSAppend.Rd | 160 man/UCTSUpload.Rd | 152 man/cbindRobust.Rd | 36 man/dotconvertJSONString.Rd | 52 man/dotconvert_JSON_Bool.Rd | 52 man/dotconvert_JSON_Date.Rd | 52 man/dotconvert_JSON_Datetime.Rd | 52 man/dotconvert_JSON_Double.Rd | 52 man/dotconvert_JSON_Integer.Rd | 52 man/dotconvert_JSON_String.Rd | 52 man/dotgetTimeseries.Rd | 54 man/dotgetType.Rd | 56 man/dotgetValue.Rd | 56 man/dotgetValueTyped.Rd | 58 man/getDataStream.Rd | 62 man/listRequest.Rd | 88 man/myStaticRequestSet.Rd | 72 man/staticListRequestSet.Rd | 68 man/staticRequest.Rd | 88 man/staticRequestSet.Rd | 74 man/timeSeriesListRequest.Rd | 112 man/timeSeriesRequest.Rd | 120 tests/testthat/test-dsws-timeSeriesListRequest.R | 15 tests/testthat/test-dsws-timeSeriesRequestChunking.R | 90 30 files changed, 3253 insertions(+), 3273 deletions(-)
More information about DatastreamDSWS2R at CRAN
Permanent link
Title: Functions for Analysis of fMRI Datasets Stored in the ANALYZE or
NIFTI Format
Description: Functions for I/O, visualisation and analysis of functional Magnetic Resonance Imaging (fMRI) datasets stored in the ANALYZE or NIFTI format. Note that the latest version of XQuartz seems to be necessary under MacOS.
Author: Pierre Lafaye De Micheaux [aut, cre],
Jonathan L Marchini [aut],
Cleve Moler [cph] (LAPACK/BLAS routines in src),
Jack Dongarra [cph] (LAPACK/BLAS routines in src),
Richard Hanson [cph] (LAPACK/BLAS routines in src),
Sven Hammarling [cph] (LAPACK/BLAS routines in src),
Jeremy Du Croz [cph] (LAPACK/BLAS routines in src)
Maintainer: Pierre Lafaye De Micheaux <lafaye@unsw.edu.au>
Diff between AnalyzeFMRI versions 1.1-23 dated 2020-12-15 and 1.1-24 dated 2021-10-05
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- configure.ac | 9 ++++----- inst/HISTORY | 6 ++++++ 4 files changed, 17 insertions(+), 12 deletions(-)
Title: Simulate Stock-Flow Consistent Models
Description: Routines to write, simulate, and validate stock-flow consistent (SFC) models. The accounting structure of SFC models are described in Godley and Lavoie (2007, ISBN:978-1-137-08599-3). The algorithms implemented to solve the models (Gauss-Seidel and Broyden) are described in Kinsella and O'Shea (2010) <doi:10.2139/ssrn.1729205> and Peressini and Sullivan (1988, ISBN:0-387-96614-5).
Author: Joao Macalos [aut, cre] (<https://orcid.org/0000-0001-6050-6394>)
Maintainer: Joao Macalos <joaomacalos@gmail.com>
Diff between sfcr versions 0.1.1 dated 2021-01-08 and 0.2.0 dated 2021-10-05
DESCRIPTION | 7 MD5 | 27 +- NEWS.md | 20 + R/sfcr_baseline.R | 16 + R/sfcr_portfolio.R | 380 ++++++++++++++++++------------------ R/sfcr_scenario.R | 67 ++++++ R/sfcr_shock.R | 12 + README.md | 118 ++++++++++- build/partial.rdb |binary inst/doc/sfcr_multis.html | 361 +++++----------------------------- man/dot-check_shock_consistency.Rd |only man/dot-check_symmetry.Rd | 2 man/sfcr_shock.Rd | 13 + tests/testthat/test-sfcr_baseline.R | 21 + tests/testthat/test-sfcr_scenario.R | 44 ++++ 15 files changed, 562 insertions(+), 526 deletions(-)
More information about multIntTestFunc at CRAN
Permanent link
Title: Tools for Multiple Imputation in Multilevel Modeling
Description: Provides tools for multiple imputation of missing data in multilevel
modeling. Includes a user-friendly interface to the packages 'pan' and 'jomo',
and several functions for visualization, data management and the analysis
of multiply imputed data sets.
Author: Simon Grund [aut,cre], Alexander Robitzsch [aut], Oliver Luedtke [aut]
Maintainer: Simon Grund <grund@ipn.uni-kiel.de>
Diff between mitml versions 0.4-2 dated 2021-09-10 and 0.4-3 dated 2021-10-05
DESCRIPTION | 8 ++++---- MD5 | 24 +++++++++++++----------- NAMESPACE | 2 ++ NEWS | 11 +++++++++++ R/internal-methods-estimates.R | 4 ++++ R/internal-zzz.R | 3 ++- R/mids2mitml.list.R | 2 +- R/mitml.list2mids.R |only inst/doc/Analysis.Rmd | 14 +++++++------- inst/doc/Analysis.html | 2 +- inst/doc/Introduction.html | 2 +- inst/doc/Level2.html | 2 +- man/mitml.list2mids.Rd |only vignettes/Analysis.Rmd | 14 +++++++------- 14 files changed, 54 insertions(+), 34 deletions(-)
Title: A Tool for Processing and Analyzing Dendrometer Data
Description: There are various functions for managing and cleaning data before the application of different approaches. This includes identifying and erasing sudden jumps in dendrometer data not related to environmental change, identifying the time gaps of recordings, and changing the temporal resolution of data to different frequencies. Furthermore, the package calculates daily statistics of dendrometer data, including the daily amplitude of tree growth. Various approaches can be applied to separate radial growth from daily cyclic shrinkage and expansion due to uptake and loss of stem water. In addition, it identifies periods of consecutive days with user-defined climatic conditions in daily meteorological data, then check what trees are doing during that period.
Author: Sugam Aryal [aut, cre, dtc],
Martin Häusser [aut],
Jussi Grießinger [aut],
Ze-Xin Fan [aut],
Achim Bräuning [aut, dgs]
Maintainer: Sugam Aryal <sugam.aryal@fau.de>
Diff between dendRoAnalyst versions 0.1.1 dated 2020-07-03 and 0.1.2 dated 2021-10-05
DESCRIPTION | 10 MD5 | 23 - R/clim.twd.R | 4 R/daily.data.R | 4 R/phase.sc.R | 6 R/phase.zg.R | 461 +++++++++++++++++----------------- build/partial.rdb |only build/vignette.rds |binary inst/doc/dendRoAnalyst_vignettes.html | 193 -------------- man/clim.twd.Rd | 4 man/daily.data.Rd | 4 man/phase.sc.Rd | 6 man/phase.zg.Rd | 4 13 files changed, 280 insertions(+), 439 deletions(-)
Title: Utilities for the Simulation and Analysis of Random Fields
Description: Various utilities are provided that might be used in spatial statistics and elsewhere. It delivers a method for solving linear equations that checks the sparsity of the matrix before any algorithm is used. Furthermore, it includes the Struve functions.
Author: Martin Schlather [aut, cre], Reinhard Furrer [ctb], Martin Kroll [ctb], Brian D. Ripley [ctb]
Maintainer: Martin Schlather <schlather@math.uni-mannheim.de>
Diff between RandomFieldsUtils versions 0.5.4 dated 2021-09-22 and 0.5.5 dated 2021-10-05
DESCRIPTION | 7 ++- MD5 | 64 ++++++++++++++++++-------------- inst/include/Basic_utils.h | 62 +++++++++++++++++++------------ inst/include/Basic_utils_local.h |only inst/include/General_utils.h | 10 +---- inst/include/Options_utils.h | 15 ------- inst/include/Utils.h | 3 + inst/include/errors_messages.h | 58 ++++++++++++----------------- inst/include/extern.h |only inst/include/intrinsics.h | 4 +- inst/include/intrinsics.specific.h |only inst/include/kleinkram.h | 4 -- inst/include/own.h | 4 -- src/Basic_utils.h | 62 +++++++++++++++++++------------ src/Basic_utils_local.h |only src/General_utils.h | 10 +---- src/Options_utils.h | 15 ------- src/RFoptions.cc | 7 ++- src/Utils.h | 3 + src/brdomain.cc | 4 -- src/errors_messages.h | 58 ++++++++++++----------------- src/extern.cc |only src/extern.h |only src/intrinsics.h | 72 ++----------------------------------- src/intrinsics.specific.h |only src/kleinkram.cc | 3 + src/kleinkram.h | 4 -- src/linear.cc | 3 - src/maths.cc | 2 - src/options.cc | 12 +++--- src/own.cc | 17 +------- src/own.h | 4 -- src/parallel_simd.h |only src/scalar.cc | 4 +- src/solve.cc | 62 ++++++++++++++++--------------- src/sort.cc | 2 - src/utils.cc | 4 +- 37 files changed, 235 insertions(+), 344 deletions(-)
More information about RandomFieldsUtils at CRAN
Permanent link
Title: Landscape Epidemiology and Evolution
Description: A stochastic, spatially-explicit, demo-genetic model simulating the spread and evolution
of a plant pathogen in a heterogeneous landscape to assess resistance deployment strategies.
It is based on a spatial geometry for describing the landscape and allocation of different cultivars,
a dispersal kernel for the dissemination of the pathogen, and a SEIR
('Susceptible-Exposed-Infectious-Removed’) structure with a discrete time step.
It provides a useful tool to assess the performance of a wide range of deployment options with
respect to their epidemiological, evolutionary and economic outcomes.
Loup Rimbaud, Julien Papaïx, Jean-François Rey, Luke G Barrett,
Peter H Thrall (2018) <doi:10.1371/journal.pcbi.1006067>.
Author: Loup Rimbaud [aut],
Julien Papaix [aut],
Jean-François Rey [aut, cre] (<https://orcid.org/0000-0003-3281-6701>),
Jean-Loup Gaussen [ctb]
Maintainer: Jean-François Rey <jean-francois.rey@inrae.fr>
Diff between landsepi versions 1.1.0 dated 2021-07-26 and 1.1.1 dated 2021-10-05
DESCRIPTION | 10 +++++----- MD5 | 24 ++++++++++++------------ R/landsepi.R | 4 ++-- build/vignette.rds |binary configure | 13 +++++++------ configure.ac | 6 +++--- data/dispP_a40_b7.rda |binary data/landscapesTEST.rda |binary inst/doc/O1-run_simple_simul.html | 6 +++--- inst/doc/landsepi_poster.pdf |binary inst/doc/list_of_parameters.pdf |binary man/landsepi-package.Rd | 4 ++-- vignettes/landsepiposter.pdf |binary 13 files changed, 34 insertions(+), 33 deletions(-)
Title: Correlation-Based Feature Selection for Single-Cell RNA
Sequencing Data
Description: Determining the optimal set of feature genes to characterise cell types in single-cell RNA sequencing data using stepwise regression on gene-gene correlations. <doi:10.1101/2020.10.07.330563>.
Author: Bobby Ranjan [aut, cre],
Kunal Mishra [ctb],
Shyam Lab [cph],
Bryan Hanson [ctb],
Damian Coventry [ctb],
Brandon Crosby [ctb],
Gregoire Thomas [ctb]
Maintainer: Bobby Ranjan <ranjan_bobby@gis.a-star.edu.sg>
Diff between DUBStepR versions 1.1.3 dated 2021-06-03 and 1.2.0 dated 2021-10-05
DUBStepR-1.1.3/DUBStepR/man/figures/Methodology.png |only DUBStepR-1.1.3/DUBStepR/vignettes/pbmc_1k_v2_filtered_feature_bc_matrix.h5 |only DUBStepR-1.2.0/DUBStepR/DESCRIPTION | 6 DUBStepR-1.2.0/DUBStepR/LICENSE | 2 DUBStepR-1.2.0/DUBStepR/MD5 | 60 DUBStepR-1.2.0/DUBStepR/NAMESPACE | 12 DUBStepR-1.2.0/DUBStepR/R/DUBStepR.R | 101 - DUBStepR-1.2.0/DUBStepR/R/findElbow.R | 322 +-- DUBStepR-1.2.0/DUBStepR/R/getCorrelationRange.R | 52 DUBStepR-1.2.0/DUBStepR/R/getFilteredData.R | 78 DUBStepR-1.2.0/DUBStepR/R/getGGC.R | 108 - DUBStepR-1.2.0/DUBStepR/R/getOptimalFeatureSet.R | 194 +- DUBStepR-1.2.0/DUBStepR/R/logNormalize.R | 54 DUBStepR-1.2.0/DUBStepR/R/pbmc_norm_small_data-data.R | 16 DUBStepR-1.2.0/DUBStepR/R/runStepwiseReg.R | 308 +-- DUBStepR-1.2.0/DUBStepR/R/sysdata.rda |binary DUBStepR-1.2.0/DUBStepR/README.md | 30 DUBStepR-1.2.0/DUBStepR/build/vignette.rds |binary DUBStepR-1.2.0/DUBStepR/data/pbmc_norm_small_data.rda |binary DUBStepR-1.2.0/DUBStepR/inst/doc/dub-vignette.R | 112 - DUBStepR-1.2.0/DUBStepR/inst/doc/dub-vignette.Rmd | 260 +- DUBStepR-1.2.0/DUBStepR/inst/doc/dub-vignette.html | 970 ++++------ DUBStepR-1.2.0/DUBStepR/man/DUBStepR.Rd | 13 DUBStepR-1.2.0/DUBStepR/man/figures/methodology_compressed.png |only DUBStepR-1.2.0/DUBStepR/man/findElbow.Rd | 102 - DUBStepR-1.2.0/DUBStepR/man/getCorrelationRange.Rd | 34 DUBStepR-1.2.0/DUBStepR/man/getFilteredData.Rd | 4 DUBStepR-1.2.0/DUBStepR/man/getGGC.Rd | 34 DUBStepR-1.2.0/DUBStepR/man/getOptimalFeatureSet.Rd | 68 DUBStepR-1.2.0/DUBStepR/man/logNormalize.Rd | 38 DUBStepR-1.2.0/DUBStepR/man/runStepwiseReg.Rd | 34 DUBStepR-1.2.0/DUBStepR/vignettes/counts.rda |only DUBStepR-1.2.0/DUBStepR/vignettes/dub-vignette.Rmd | 260 +- 33 files changed, 1557 insertions(+), 1715 deletions(-)
Title: The Complete R6 Probability Distributions Interface
Description: An R6 object oriented distributions package. Unified
interface for 42 probability distributions and 11 kernels including
functionality for multiple scientific types. Additionally
functionality for composite distributions and numerical imputation.
Design patterns including wrappers and decorators are described in
Gamma et al. (1994, ISBN:0-201-63361-2). For quick reference of
probability distributions including d/p/q/r functions and results we
refer to McLaughlin, M. P. (2001). Additionally Devroye (1986,
ISBN:0-387-96305-7) for sampling the Dirichlet distribution, Gentle
(2009) <doi:10.1007/978-0-387-98144-4> for sampling the Multivariate
Normal distribution and Michael et al. (1976) <doi:10.2307/2683801>
for sampling the Wald distribution.
Author: Raphael Sonabend [aut, cre] (<https://orcid.org/0000-0001-9225-4654>),
Franz Kiraly [aut],
Peter Ruckdeschel [ctb] (Author of distr),
Matthias Kohl [ctb] (Author of distr),
Nurul Ain Toha [ctb],
Shen Chen [ctb],
Jordan Deenichin [ctb],
Chengyang Gao [ctb],
Chloe Zhaoyuan Gu [ctb],
Yunjie He [ctb],
Xiaowen Huang [ctb],
Shuhan Liu [ctb],
Runlong Yu [ctb],
Chijing Zeng [ctb],
Qian Zhou [ctb]
Maintainer: Raphael Sonabend <raphaelsonabend@gmail.com>
Diff between distr6 versions 1.6.0 dated 2021-09-06 and 1.6.2 dated 2021-10-05
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NEWS.md | 8 ++++++++ R/SDistribution_Hypergeometric.R | 1 - inst/doc/distr6.html | 4 ++-- tests/testthat/test-decorator-functionimputation.R | 6 +++--- 6 files changed, 22 insertions(+), 15 deletions(-)
Title: Variational Bayesian Inference for Genome-Wide Regression
Description: Conducts linear regression using variational Bayesian inference, particularly optimized for genome-wide association mapping and whole-genome prediction which use a number of DNA markers as the explanatory variables. Provides seven regression models which select the important variables (i.e., the variables related to response variables) among the given explanatory variables in different ways (i.e., model structures).
Author: Akio Onogi
Maintainer: Akio Onogi <onogiakio@gmail.com>
Diff between VIGoR versions 1.0 dated 2015-05-20 and 1.1.0 dated 2021-10-05
VIGoR-1.0/VIGoR/man/Covariates.Rd |only VIGoR-1.0/VIGoR/man/Geno.Rd |only VIGoR-1.0/VIGoR/man/Pheno.Rd |only VIGoR-1.0/VIGoR/src/MT.h |only VIGoR-1.0/VIGoR/src/vigorr.c |only VIGoR-1.0/VIGoR/src/vigorr.h |only VIGoR-1.1.0/VIGoR/DESCRIPTION | 10 VIGoR-1.1.0/VIGoR/MD5 | 30 VIGoR-1.1.0/VIGoR/NAMESPACE | 6 VIGoR-1.1.0/VIGoR/R/hyperpara.R | 234 +++--- VIGoR-1.1.0/VIGoR/R/predict_vigor.R |only VIGoR-1.1.0/VIGoR/R/vigor.R | 1174 +++++++++++++++++++++++--------- VIGoR-1.1.0/VIGoR/data/sampledata.RData |binary VIGoR-1.1.0/VIGoR/man/X.Rd |only VIGoR-1.1.0/VIGoR/man/Y.Rd |only VIGoR-1.1.0/VIGoR/man/Z.Rd |only VIGoR-1.1.0/VIGoR/man/hyperpara.Rd | 86 +- VIGoR-1.1.0/VIGoR/man/predict_vigor.Rd |only VIGoR-1.1.0/VIGoR/man/vigor.Rd | 425 ++++++----- VIGoR-1.1.0/VIGoR/src/Boolean.h |only VIGoR-1.1.0/VIGoR/src/Rdynload.h |only VIGoR-1.1.0/VIGoR/src/header1.h |only VIGoR-1.1.0/VIGoR/src/header2.h |only VIGoR-1.1.0/VIGoR/src/main.c |only 24 files changed, 1326 insertions(+), 639 deletions(-)
Title: Sparse Interval Sliced Inverse Regression
Description: An interval fusion procedure for functional data in the
semiparametric framework of SIR, as described in
<doi:10.1007/s11222-018-9806-6>. Standard ridge and sparse SIR are
also included in the package.
Author: Victor Picheny [aut],
Remi Servien [aut],
Nathalie Vialaneix [aut, cre]
Maintainer: Nathalie Vialaneix <nathalie.vialaneix@inrae.fr>
Diff between SISIR versions 0.1-1 dated 2020-06-05 and 0.1-2 dated 2021-10-05
SISIR-0.1-1/SISIR/man/tune.Rd |only SISIR-0.1-2/SISIR/DESCRIPTION | 10 +++++----- SISIR-0.1-2/SISIR/MD5 | 10 +++++----- SISIR-0.1-2/SISIR/NAMESPACE | 3 +-- SISIR-0.1-2/SISIR/NEWS | 4 ++++ SISIR-0.1-2/SISIR/R/ridgeSIR.R | 10 ++-------- SISIR-0.1-2/SISIR/man/tune.ridgeSIR.Rd |only 7 files changed, 17 insertions(+), 20 deletions(-)
Title: A Fast and Lightweight R6 Parameter Interface
Description: By making use of 'set6', alongside the S3 and R6 paradigms, this package provides a fast and lightweight R6 interface for parameters and parameter sets.
Author: Raphael Sonabend [aut, cre] (<https://orcid.org/0000-0001-9225-4654>)
Maintainer: Raphael Sonabend <raphaelsonabend@gmail.com>
Diff between param6 versions 0.2.2 dated 2021-09-22 and 0.2.3 dated 2021-10-05
DESCRIPTION | 6 LICENSE | 2 MD5 | 70 - NAMESPACE | 56 - NEWS.md | 72 - R/ParameterSet.R | 876 +++++++++---------- R/ParameterSet_S3methods.R | 390 ++++---- R/ParameterSet_helpers.R | 680 +++++++------- R/ParameterSet_methods.R | 982 ++++++++++----------- R/cnd.R | 188 ++-- R/helpers.R | 294 +++--- R/prm.R | 250 ++--- R/support_dictionary.R | 116 +- R/tools.R | 100 +- R/zzz.R | 30 README.md | 432 ++++----- man/ParameterSet.Rd | 1336 ++++++++++++++--------------- man/as.ParameterSet.Rd | 52 - man/as.data.table.ParameterSet.Rd | 42 man/as.prm.Rd | 44 man/c.ParameterSet.Rd | 44 man/cnd.Rd | 114 +- man/cpset.Rd | 50 - man/expect_equal_ps.Rd | 28 man/length.ParameterSet.Rd | 28 man/param6-package.Rd | 50 - man/prm.Rd | 122 +- man/pset.Rd | 106 +- man/rep.ParameterSet.Rd | 68 - man/sub-.ParameterSet.Rd | 34 man/support_dictionary.Rd | 32 tests/testthat.R | 4 tests/testthat/helpers.R | 6 tests/testthat/test-helpers.R | 230 ++--- tests/testthat/test-paramset.R | 1724 +++++++++++++++++++------------------- tests/testthat/test-prm.R | 164 +-- 36 files changed, 4413 insertions(+), 4409 deletions(-)
Title: Visualization and Tools for Ichimoku Kinko Hyo Strategies
Description: An implementation of 'Ichimoku Kinko Hyo', also commonly known as
'cloud charts'. Static and interactive visualizations with tools for
creating, backtesting and development of quantitative 'ichimoku' strategies.
As described in Sasaki (1996, ISBN:4925152009), the technique is a refinement
on candlestick charting, originating from Japan and now in widespread use in
technical analysis worldwide. Translating as 'one-glance equilibrium chart',
it allows the price action and market structure of financial securities to
be determined 'at-a-glance'. Incorporates an interface with the OANDA
fxTrade API <https://developer.oanda.com/> for retrieving historical and
live streaming price data for major currencies, metals, commodities,
government bonds and stock indices.
Author: Charlie Gao [aut, cre] (<https://orcid.org/0000-0002-0750-061X>)
Maintainer: Charlie Gao <charlie.gao@shikokuchuo.net>
Diff between ichimoku versions 1.2.1 dated 2021-09-23 and 1.2.2 dated 2021-10-05
ichimoku-1.2.1/ichimoku/vignettes/oanda-stream.jpg |only ichimoku-1.2.2/ichimoku/DESCRIPTION | 12 ichimoku-1.2.2/ichimoku/MD5 | 90 +-- ichimoku-1.2.2/ichimoku/NAMESPACE | 7 ichimoku-1.2.2/ichimoku/NEWS.md | 19 ichimoku-1.2.2/ichimoku/R/archive.R | 17 ichimoku-1.2.2/ichimoku/R/ichimoku-package.R | 66 +- ichimoku-1.2.2/ichimoku/R/ichimoku.R | 10 ichimoku-1.2.2/ichimoku/R/look.R | 10 ichimoku-1.2.2/ichimoku/R/mltools.R | 68 +- ichimoku-1.2.2/ichimoku/R/oanda.R | 327 +++++++++++--- ichimoku-1.2.2/ichimoku/R/plot.R | 7 ichimoku-1.2.2/ichimoku/R/switch.R | 19 ichimoku-1.2.2/ichimoku/R/sysdata.rda |binary ichimoku-1.2.2/ichimoku/R/utils.R | 45 + ichimoku-1.2.2/ichimoku/README.md | 48 +- ichimoku-1.2.2/ichimoku/inst/doc/reference.R | 2 ichimoku-1.2.2/ichimoku/inst/doc/reference.Rmd | 16 ichimoku-1.2.2/ichimoku/inst/doc/reference.html | 20 ichimoku-1.2.2/ichimoku/inst/doc/strategies.Rmd | 2 ichimoku-1.2.2/ichimoku/inst/doc/strategies.html | 2 ichimoku-1.2.2/ichimoku/inst/doc/utilities.R | 6 ichimoku-1.2.2/ichimoku/inst/doc/utilities.Rmd | 16 ichimoku-1.2.2/ichimoku/inst/doc/utilities.html | 177 +++---- ichimoku-1.2.2/ichimoku/inst/doc/xoanda.R | 50 +- ichimoku-1.2.2/ichimoku/inst/doc/xoanda.Rmd | 139 ++++- ichimoku-1.2.2/ichimoku/inst/doc/xoanda.html | 124 +++-- ichimoku-1.2.2/ichimoku/man/archive.Rd | 13 ichimoku-1.2.2/ichimoku/man/df_append.Rd | 17 ichimoku-1.2.2/ichimoku/man/figures/README-ichimoku-1.png |binary ichimoku-1.2.2/ichimoku/man/ichimoku-package.Rd | 47 -- ichimoku-1.2.2/ichimoku/man/ichimoku.Rd | 2 ichimoku-1.2.2/ichimoku/man/oanda.Rd | 2 ichimoku-1.2.2/ichimoku/man/oanda_chart.Rd | 2 ichimoku-1.2.2/ichimoku/man/oanda_positions.Rd |only ichimoku-1.2.2/ichimoku/man/oanda_quote.Rd |only ichimoku-1.2.2/ichimoku/man/oanda_stream.Rd | 2 ichimoku-1.2.2/ichimoku/man/oanda_view.Rd |only ichimoku-1.2.2/ichimoku/man/tradingDays.Rd | 15 ichimoku-1.2.2/ichimoku/tests/testthat/test-archive.R | 1 ichimoku-1.2.2/ichimoku/tests/testthat/test-ichimoku.R | 6 ichimoku-1.2.2/ichimoku/tests/testthat/test-oanda.R | 12 ichimoku-1.2.2/ichimoku/tests/testthat/test-plot.R | 6 ichimoku-1.2.2/ichimoku/tests/testthat/test-utils.R | 5 ichimoku-1.2.2/ichimoku/vignettes/reference.Rmd | 16 ichimoku-1.2.2/ichimoku/vignettes/strategies.Rmd | 2 ichimoku-1.2.2/ichimoku/vignettes/utilities.Rmd | 16 ichimoku-1.2.2/ichimoku/vignettes/xoanda.Rmd | 139 ++++- 48 files changed, 1025 insertions(+), 577 deletions(-)
Title: Quantification of Fate Bias in Multipotent Progenitors
Description: Application of 'FateID' allows computation and visualization of cell fate bias for multi-lineage single cell transcriptome data. Herman, J.S., Sagar, Grün D. (2018) <DOI:10.1038/nmeth.4662>.
Author: Dominic Grün <dominic.gruen@gmail.com>
Maintainer: Dominic Grün <dominic.gruen@gmail.com>
Diff between FateID versions 0.2.0 dated 2021-04-07 and 0.2.1 dated 2021-10-05
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- inst/doc/FateID.Rmd | 2 +- inst/doc/FateID.html | 38 +++++++++++++++++++------------------- vignettes/FateID.Rmd | 2 +- 5 files changed, 29 insertions(+), 29 deletions(-)
Title: Multidimensional Scaling for Big Data
Description: MDS is a statistic tool for reduction of dimensionality, using as input a distance
matrix of dimensions n × n. When n is large, classical algorithms suffer from
computational problems and MDS configuration can not be obtained.
With this package, we address these problems by means of three algorithms:
- Divide-and-conquer MDS proposed by Delicado P. and C. Pachón-García (2021)
<arXiv:2007.11919>.
- Interpolation MDS, also proposed by Delicado P. and C. Pachón-García (2021)
<arXiv:2007.11919>, which uses Gower's interpolation formula as described in
Gower, J. C. and D. J. Hand (1995).
- Fast MDS, which is an implementation of the algorithm proposed by
Yang, T., J. Liu, L. McMillan, and W. Wang (2006).
The main idea of these algorithms is based on partitioning the data set into small
pieces, where classical methods can work. In order to align all the solutions,
Procrustes formula is used as described in Borg, I. and P. Groenen (2005).
Author: Cristian Pachón García [aut, cre]
(<https://orcid.org/0000-0001-9518-4874>),
Pedro Delicado [aut] (<https://orcid.org/0000-0003-3933-4852>)
Maintainer: Cristian Pachón García <cc.pachon@gmail.com>
Diff between bigmds versions 2.0.0 dated 2021-10-02 and 2.0.1 dated 2021-10-05
DESCRIPTION | 38 ++++++++++++++++++++++---------------- MD5 | 18 +++++++++--------- NEWS.md | 4 ++++ R/divide_conquer_mds.R | 9 +++++---- R/fast_mds.R | 16 ++++++++-------- R/interpolation_mds.R | 12 ++++++------ README.md | 6 +++--- man/divide_conquer_mds.Rd | 9 +++++---- man/fast_mds.Rd | 16 ++++++++-------- man/interpolation_mds.Rd | 12 ++++++------ 10 files changed, 76 insertions(+), 64 deletions(-)
Title: A Suite of Packages for Analysis of Big Genomic Data
Description: An umbrella package providing a phenotype/genotype data structure
and scalable and efficient computational methods for large genomic datasets
in combination with several other packages: 'BEDMatrix', 'LinkedMatrix',
and 'symDMatrix'.
Author: Gustavo de los Campos [aut],
Alexander Grueneberg [aut, cre],
Paulino Perez [ctb],
Ana Vazquez [ctb]
Maintainer: Alexander Grueneberg <cran@agrueneberg.info>
Diff between BGData versions 2.2.0 dated 2020-08-02 and 2.3.0 dated 2021-10-05
BGData-2.2.0/BGData/src/fitLSYS.c |only BGData-2.2.0/BGData/src/fitLSYS.h |only BGData-2.3.0/BGData/DESCRIPTION | 6 +-- BGData-2.3.0/BGData/MD5 | 38 +++++++++++----------- BGData-2.3.0/BGData/NAMESPACE | 1 BGData-2.3.0/BGData/NEWS.md | 13 +++++++ BGData-2.3.0/BGData/R/BGData.R | 4 +- BGData-2.3.0/BGData/R/findRelated.R | 13 +++---- BGData-2.3.0/BGData/R/getG.R | 33 ++++--------------- BGData-2.3.0/BGData/R/preprocess.R | 7 ++-- BGData-2.3.0/BGData/R/segments.R |only BGData-2.3.0/BGData/README.md | 9 ++--- BGData-2.3.0/BGData/man/BGData-package.Rd | 6 +-- BGData-2.3.0/BGData/man/GWAS.Rd | 39 ++++++++++++++++++----- BGData-2.3.0/BGData/man/getG.Rd | 11 ++++-- BGData-2.3.0/BGData/man/getG_symDMatrix.Rd | 6 ++- BGData-2.3.0/BGData/man/preprocess.Rd | 7 +++- BGData-2.3.0/BGData/man/segments.Rd |only BGData-2.3.0/BGData/src/init.c | 4 -- BGData-2.3.0/BGData/src/preprocess.c | 17 +++++----- BGData-2.3.0/BGData/src/preprocess.h | 2 - BGData-2.3.0/BGData/tests/testthat/test-BGData.R | 21 ++++++++++-- 22 files changed, 142 insertions(+), 95 deletions(-)
Title: Who Ever Care About the [Art of R] Scripts?
Description: For instructions, check <https://github.com/Hzhang-ouce/ARTofR>. This is a wrapper of 'bannerCommenter', for generating neat comments!
Author: Huanyuan Zhang [aut, cre] (<https://orcid.org/0000-0003-4801-8771>)
Maintainer: Huanyuan Zhang <hyzhang1996@gmail.com>
Diff between ARTofR versions 0.2.2 dated 2021-10-03 and 0.2.3 dated 2021-10-05
ARTofR-0.2.2/ARTofR/inst/doc/my-vignette.R |only ARTofR-0.2.2/ARTofR/inst/doc/my-vignette.Rmd |only ARTofR-0.2.2/ARTofR/inst/doc/my-vignette.html |only ARTofR-0.2.2/ARTofR/man/xxx_divider2.Rd |only ARTofR-0.2.2/ARTofR/vignettes/my-vignette.Rmd |only ARTofR-0.2.3/ARTofR/DESCRIPTION | 11 ++-- ARTofR-0.2.3/ARTofR/MD5 | 32 ++++++------- ARTofR-0.2.3/ARTofR/NEWS.md | 8 ++- ARTofR-0.2.3/ARTofR/R/my_own_banner.R | 4 - ARTofR-0.2.3/ARTofR/R/xxx_box.R | 10 ++-- ARTofR-0.2.3/ARTofR/R/xxx_divider.R | 47 ++++++++++--------- ARTofR-0.2.3/ARTofR/R/xxx_title.R | 2 ARTofR-0.2.3/ARTofR/README.md | 62 ++++++++++++++------------ ARTofR-0.2.3/ARTofR/build/vignette.rds |binary ARTofR-0.2.3/ARTofR/inst/doc/User_guide.R |only ARTofR-0.2.3/ARTofR/inst/doc/User_guide.Rmd |only ARTofR-0.2.3/ARTofR/inst/doc/User_guide.html |only ARTofR-0.2.3/ARTofR/man/my_own_banner.Rd | 1 ARTofR-0.2.3/ARTofR/man/xxx_box.Rd | 4 - ARTofR-0.2.3/ARTofR/man/xxx_divider1.Rd |only ARTofR-0.2.3/ARTofR/man/xxx_title1.Rd | 2 ARTofR-0.2.3/ARTofR/vignettes/User_guide.Rmd |only 22 files changed, 100 insertions(+), 83 deletions(-)
Title: Clustering of Weighted Data
Description: Clusters state sequences and weighted data. It provides an optimized weighted PAM algorithm as well as functions for aggregating replicated cases, computing cluster quality measures for a range of clustering solutions and plotting (fuzzy) clusters of state sequences. Parametric bootstraps methods to validate typology of sequences are also provided.
Author: Matthias Studer [aut, cre]
Maintainer: Matthias Studer <matthias.studer@unige.ch>
Diff between WeightedCluster versions 1.4-1 dated 2020-07-06 and 1.6-0 dated 2021-10-05
DESCRIPTION | 12 ++++++------ MD5 | 19 ++++++++++++------- NAMESPACE | 14 +++++++++++--- NEWS | 6 ++++++ R/seqnull.R |only R/seqnullcqi.R |only build/partial.rdb |only build/vignette.rds |binary inst/doc/WeightedCluster.pdf |binary inst/doc/WeightedClusterFR.pdf |binary inst/doc/WeightedClusterPreview.pdf |binary man/seqnull.Rd |only man/seqnullcqi.Rd |only 13 files changed, 35 insertions(+), 16 deletions(-)
More information about WeightedCluster at CRAN
Permanent link
Title: Bayesian Statistics for 2D/3D Transformations
Description: Fits 2D and 3D geometric transformations via 'Stan' probabilistic programming engine (
Stan Development Team (2021) <https://mc-stan.org>). Returns posterior distribution for individual
parameters of the fitted distribution. Allows for computation of LOO and WAIC information criteria
(Vehtari A, Gelman A, Gabry J (2017) <doi:10.1007/s11222-016-9696-4>) as well as Bayesian R-squared
(Gelman A, Goodrich B, Gabry J, and Vehtari A (2018) <doi:10.1080/00031305.2018.1549100>).
Author: Alexander (Sasha) Pastukhov [cre, ctb],
Claus-Christian Carbon [aut]
Maintainer: Alexander (Sasha) Pastukhov <pastukhov.alexander@gmail.com>
Diff between TriDimRegression versions 1.0.0.0 dated 2021-05-04 and 1.0.1 dated 2021-10-05
DESCRIPTION | 6 MD5 | 19 NEWS.md |only build/partial.rdb |binary build/vignette.rds |binary inst/doc/calibration.html | 16 inst/doc/comparing_faces.html | 792 +++++++++++++++++----------------- inst/doc/transformation_matrices.Rmd | 2 inst/doc/transformation_matrices.html | 4 src/RcppExports.cpp | 5 vignettes/transformation_matrices.Rmd | 2 11 files changed, 426 insertions(+), 420 deletions(-)
More information about TriDimRegression at CRAN
Permanent link
Title: Semiparametric Spatial Filtering with Eigenvectors in
(Generalized) Linear Models
Description: Tools to decompose (transformed) spatial connectivity matrices and perform supervised or unsupervised semiparametric spatial filtering in a regression framework. The package supports unsupervised spatial filtering in standard linear as well as some generalized linear regression models.
Author: Sebastian Juhl [aut, cre] (<https://orcid.org/0000-0002-7123-5398>)
Maintainer: Sebastian Juhl <sebastian.juhl@t-online.de>
Diff between spfilteR versions 1.1.0 dated 2021-05-12 and 1.1.1 dated 2021-10-05
DESCRIPTION | 10 MD5 | 61 ++--- NEWS.md | 17 + R/MI.decomp.R | 83 ++++--- R/MI.ev.R | 6 R/MI.local.R | 50 ++-- R/MI.resid.R | 87 ++++--- R/MI.sf.R | 4 R/MI.vec.R | 62 +++-- R/getEVs.R | 26 +- R/glmFilter.R | 439 +++++++++++++++++++++------------------- R/lmFilter.R | 370 ++++++++++++++++++--------------- R/methods.R | 118 +++++----- R/partialR2.R | 42 ++- R/utils.R | 115 +++++----- R/vif.ev.R | 32 +- R/vp.R | 128 ++++++----- README.md | 2 inst/CITATION |only inst/doc/spfilteR_vignette.R | 55 ++--- inst/doc/spfilteR_vignette.Rmd | 59 ++--- inst/doc/spfilteR_vignette.html | 208 +++++++++++------- man/MI.decomp.Rd | 10 man/MI.resid.Rd | 14 - man/MI.vec.Rd | 6 man/getEVs.Rd | 4 man/glmFilter.Rd | 40 +-- man/lmFilter.Rd | 32 +- man/partialR2.Rd | 4 man/vif.ev.Rd | 6 man/vp.Rd | 6 vignettes/spfilteR_vignette.Rmd | 59 ++--- 32 files changed, 1193 insertions(+), 962 deletions(-)
Title: Multivariate Analysis of Spatial Data Using a Unifying Spatial
Fusion Framework
Description: Multivariate modelling of geostatistical (point), lattice (areal) and point pattern data in a unifying spatial fusion framework. Details are given in Wang and Furrer (2021) <doi:10.1016/j.csda.2021.107240>. Model inference is done using either 'Stan' <https://mc-stan.org/> or 'INLA' <https://www.r-inla.org/>.
Author: Craig Wang [aut, cre] (<https://orcid.org/0000-0003-1804-2463>),
Reinhard Furrer [ctb] (<https://orcid.org/0000-0002-6319-2332>)
Maintainer: Craig Wang <craig.wang@math.uzh.ch>
Diff between spatialfusion versions 0.6-3 dated 2021-06-27 and 0.6-4 dated 2021-10-05
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ build/partial.rdb |binary man/fusion.Rd | 2 ++ man/fusion.dstan.Rd | 2 ++ man/fusionSimulate.Rd | 2 ++ man/spatialfusion-package.Rd | 4 ++-- 7 files changed, 18 insertions(+), 12 deletions(-)
Title: Linear Models for Panel Data
Description: A set of estimators and tests for panel data
econometrics, as described in Baltagi (2021), Econometric Analysis of Panel Data, ISBN-13:978-3-030-53952-8,
Hsiao (2014), Analysis of Panel Data <doi:10.1017/CBO9781139839327>, and
Croissant and Millo (2018), Panel Data Econometrics with R, ISBN-13:978-1-118-94918-4.
Author: Yves Croissant [aut, cre],
Giovanni Millo [aut],
Kevin Tappe [aut],
Ott Toomet [ctb],
Christian Kleiber [ctb],
Achim Zeileis [ctb],
Arne Henningsen [ctb],
Liviu Andronic [ctb],
Nina Schoenfelder [ctb]
Maintainer: Yves Croissant <yves.croissant@univ-reunion.fr>
Diff between plm versions 2.4-2 dated 2021-09-21 and 2.4-3 dated 2021-10-05
plm-2.4-2/plm/tests/Examples |only plm-2.4-2/plm/tests/test_Chow.R |only plm-2.4-2/plm/tests/test_Chow.Rout.save |only plm-2.4-2/plm/tests/test_Errors.R |only plm-2.4-2/plm/tests/test_Errors.Rout.save |only plm-2.4-2/plm/tests/test_Estimators.R |only plm-2.4-2/plm/tests/test_Estimators.Rout.save |only plm-2.4-2/plm/tests/test_EstimatorsIV.R |only plm-2.4-2/plm/tests/test_EstimatorsIV.Rout.save |only plm-2.4-2/plm/tests/test_EstimatorsNested.R |only plm-2.4-2/plm/tests/test_EstimatorsNested.Rout.save |only plm-2.4-2/plm/tests/test_Evaluation.Rout.save |only plm-2.4-2/plm/tests/test_FD_models.R |only plm-2.4-2/plm/tests/test_FD_models.Rout.save |only plm-2.4-2/plm/tests/test_R2_adj_R2.R |only plm-2.4-2/plm/tests/test_as.data.frame_as.matrix.R |only plm-2.4-2/plm/tests/test_as.list.pdata.frame.R |only plm-2.4-2/plm/tests/test_cipstest.R |only plm-2.4-2/plm/tests/test_cipstest.Rout.save |only plm-2.4-2/plm/tests/test_clubSandwich_interoperability.R |only 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|only plm-2.4-2/plm/tests/test_pdata.frame_subsetting.Rout.save |only plm-2.4-2/plm/tests/test_pdata.frame_unused_levels.R |only plm-2.4-2/plm/tests/test_pdiff_fd.R |only plm-2.4-2/plm/tests/test_pdwtest.R |only plm-2.4-2/plm/tests/test_pggls.R |only plm-2.4-2/plm/tests/test_pgmm.R |only plm-2.4-2/plm/tests/test_pgmm.Rout.save |only plm-2.4-2/plm/tests/test_pgrangertest.R |only plm-2.4-2/plm/tests/test_pgrangertest.Rout.save |only plm-2.4-2/plm/tests/test_pht.R |only plm-2.4-2/plm/tests/test_pht.Rout.save |only plm-2.4-2/plm/tests/test_phtest_Hausman_regression.R |only plm-2.4-2/plm/tests/test_phtest_Hausman_regression.Rout.save |only plm-2.4-2/plm/tests/test_plm.data.R |only plm-2.4-2/plm/tests/test_plm_na.action.R |only plm-2.4-2/plm/tests/test_plmtest_unbalanced.R |only plm-2.4-2/plm/tests/test_plmtest_unbalanced.Rout.save |only plm-2.4-2/plm/tests/test_preserve_rownames.R |only plm-2.4-2/plm/tests/test_pseries_subsetting.R |only plm-2.4-2/plm/tests/test_pseries_subsetting.Rout.save |only plm-2.4-2/plm/tests/test_punbalancedness.R |only plm-2.4-2/plm/tests/test_purtest.R |only plm-2.4-2/plm/tests/test_purtest.Rout.save |only plm-2.4-2/plm/tests/test_pvar.R |only plm-2.4-2/plm/tests/test_pvar.Rout.save |only plm-2.4-2/plm/tests/test_pvcm.R |only plm-2.4-2/plm/tests/test_pvcm.Rout.save |only plm-2.4-2/plm/tests/test_pwaldtest.R |only plm-2.4-2/plm/tests/test_pwaldtest.Rout.save |only plm-2.4-2/plm/tests/test_pwaldtest_vcovG_attr_cluster.R |only plm-2.4-2/plm/tests/test_pwaldtest_vcovG_attr_cluster.Rout.save |only plm-2.4-2/plm/tests/test_pwfdtest_pwartest.R |only plm-2.4-2/plm/tests/test_pwtest.R |only plm-2.4-2/plm/tests/test_ranef.R |only plm-2.4-2/plm/tests/test_ranef.Rout.save |only plm-2.4-2/plm/tests/test_residuals_overall_fitted_exp.R |only plm-2.4-2/plm/tests/test_summary.plm_vcov.R |only plm-2.4-2/plm/tests/test_summary.pseries_character_logical_factor.R |only plm-2.4-2/plm/tests/test_transformations.R |only plm-2.4-2/plm/tests/test_transformations_collapse.R |only plm-2.4-2/plm/tests/test_vcovG_lin_dep.R |only plm-2.4-2/plm/tests/test_within_intercept.R |only plm-2.4-2/plm/tests/test_within_intercept.Rout.save |only plm-2.4-3/plm/DESCRIPTION | 17 plm-2.4-3/plm/MD5 | 277 plm-2.4-3/plm/NEWS.md | 49 plm-2.4-3/plm/R/est_cce.R | 4 plm-2.4-3/plm/R/test_serial.R | 2 plm-2.4-3/plm/R/test_uroot.R | 22 plm-2.4-3/plm/R/tool_transformations_collapse.R | 10 plm-2.4-3/plm/R/tool_vcovG.R | 2 plm-2.4-3/plm/README.md |only plm-2.4-3/plm/build/partial.rdb |binary plm-2.4-3/plm/build/vignette.rds |binary plm-2.4-3/plm/data/Cigar.rda |binary plm-2.4-3/plm/data/Crime.rda |binary plm-2.4-3/plm/data/EmplUK.rda |binary plm-2.4-3/plm/data/Gasoline.rda |binary plm-2.4-3/plm/data/Grunfeld.rda |binary plm-2.4-3/plm/data/Hedonic.rda |binary plm-2.4-3/plm/data/LaborSupply.rda |binary plm-2.4-3/plm/data/Males.rda |binary plm-2.4-3/plm/data/Parity.rda |binary plm-2.4-3/plm/data/Produc.rda |binary plm-2.4-3/plm/data/RiceFarms.rda |binary plm-2.4-3/plm/data/Snmesp.rda |binary plm-2.4-3/plm/data/SumHes.rda |binary plm-2.4-3/plm/data/Wages.rda |binary plm-2.4-3/plm/inst/CITATION | 6 plm-2.4-3/plm/inst/REFERENCES.bib | 14 plm-2.4-3/plm/inst/doc/A_plmPackage.R | 582 - plm-2.4-3/plm/inst/doc/A_plmPackage.html | 4301 ++++------ plm-2.4-3/plm/inst/doc/B_plmFunction.R | 304 plm-2.4-3/plm/inst/doc/B_plmFunction.html | 1469 +-- plm-2.4-3/plm/inst/doc/C_plmModelComponents.R | 144 plm-2.4-3/plm/inst/doc/C_plmModelComponents.html | 759 - plm-2.4-3/plm/inst/tests |only plm-2.4-3/plm/man/pbltest.Rd | 2 plm-2.4-3/plm/man/pcce.Rd | 4 plm-2.4-3/plm/man/vcovHC.plm.Rd | 2 138 files changed, 3702 insertions(+), 4268 deletions(-)
Title: Add Even More Interactivity to Interactive Charts
Description: Like package 'manipulate' does for static graphics, this package
helps to easily add controls like sliders, pickers, checkboxes, etc. that
can be used to modify the input data or the parameters of an interactive
chart created with package 'htmlwidgets'.
Author: Veronique Bachelier [aut, cre],
Jalal-Edine ZAWAM [aut],
Francois Guillem [aut],
RTE [cph],
JJ Allaire [ctb],
Marion Praz [ctb] (New user interface),
Benoit Thieurmel [ctb],
Titouan Robert [ctb],
Duncan Murdoch [ctb]
Maintainer: Veronique Bachelier <veronique.bachelier@rte-france.com>
Diff between manipulateWidget versions 0.11.0 dated 2021-05-31 and 0.11.1 dated 2021-10-05
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NEWS.md | 5 +++++ build/vignette.rds |binary inst/doc/manipulateWidgets.html | 18 +++++++++--------- tests/testthat/test-inputs.R | 16 ++++++++-------- 6 files changed, 31 insertions(+), 26 deletions(-)
More information about manipulateWidget at CRAN
Permanent link
Title: May All Data be Reproducible and Transparent (MADRaT) *
Description: Provides a framework which should improve reproducibility and transparency in data processing. It provides functionality such as automatic meta data creation and management, rudimentary quality management, data caching, work-flow management and data aggregation.
* The title is a wish not a promise. By no means we expect this package to deliver everything what is needed to achieve full reproducibility and transparency, but we believe that it supports efforts in this direction.
Author: Jan Philipp Dietrich [aut, cre],
Lavinia Baumstark [aut],
Stephen Wirth [aut],
Anastasis Giannousakis [aut],
Renato Rodrigues [aut],
Benjamin Leon Bodirsky [aut],
Ulrich Kreidenweis [aut],
David Klein [aut],
Pascal Führlich [aut]
Maintainer: Jan Philipp Dietrich <dietrich@pik-potsdam.de>
Diff between madrat versions 1.64.5 dated 2019-12-17 and 2.3.1 dated 2021-10-05
madrat-1.64.5/madrat/R/diagnosticSources.R |only madrat-1.64.5/madrat/R/file2destination.R |only madrat-1.64.5/madrat/R/getDependentCalls.R |only madrat-1.64.5/madrat/R/plotdiagnostics.R |only madrat-1.64.5/madrat/R/toolMappingFile.R |only madrat-1.64.5/madrat/man/diagnosticSources.Rd |only madrat-1.64.5/madrat/man/file2destination.Rd |only madrat-1.64.5/madrat/man/getDependentCalls.Rd |only madrat-1.64.5/madrat/man/plotDiagnostics.Rd |only madrat-1.64.5/madrat/man/toolMappingFile.Rd |only madrat-1.64.5/madrat/tests/testthat/test-travisCI.R |only madrat-2.3.1/madrat/DESCRIPTION | 26 madrat-2.3.1/madrat/MD5 | 236 ++-- madrat-2.3.1/madrat/NAMESPACE | 67 - madrat-2.3.1/madrat/R/cacheArgumentsHash.R |only madrat-2.3.1/madrat/R/cacheCopy.R |only madrat-2.3.1/madrat/R/cacheGet.R |only madrat-2.3.1/madrat/R/cacheName.R |only madrat-2.3.1/madrat/R/cachePut.R |only madrat-2.3.1/madrat/R/calcOutput.R | 534 ++++++---- madrat-2.3.1/madrat/R/calcTauTotal.R | 14 madrat-2.3.1/madrat/R/checkBidirectional.R |only madrat-2.3.1/madrat/R/compareData.R |only madrat-2.3.1/madrat/R/convertTau.R | 7 madrat-2.3.1/madrat/R/downloadSource.R | 89 + madrat-2.3.1/madrat/R/downloadTau.R | 48 madrat-2.3.1/madrat/R/findBottlenecks.R |only madrat-2.3.1/madrat/R/fingerprint.R | 185 ++- madrat-2.3.1/madrat/R/fullEXAMPLE.R | 34 madrat-2.3.1/madrat/R/getCalculations.R | 54 - 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madrat-2.3.1/madrat/R/toolCountryFill.R | 145 +- madrat-2.3.1/madrat/R/toolFillWithRegionAvg.R | 129 +- madrat-2.3.1/madrat/R/toolFillYears.R | 2 madrat-2.3.1/madrat/R/toolGetMapping.R | 98 + madrat-2.3.1/madrat/R/toolISOhistorical.R | 188 +-- madrat-2.3.1/madrat/R/toolOrderCells.R |only madrat-2.3.1/madrat/R/toolSplitSubtype.R |only madrat-2.3.1/madrat/R/toolSubtypeSelect.R | 4 madrat-2.3.1/madrat/R/toolTimeAverage.R |only madrat-2.3.1/madrat/R/toolTimeSpline.R |only madrat-2.3.1/madrat/R/toolXlargest.R | 26 madrat-2.3.1/madrat/R/toolendmessage.R | 49 madrat-2.3.1/madrat/R/toolstartmessage.R | 63 - madrat-2.3.1/madrat/R/vcat.R | 103 + madrat-2.3.1/madrat/README.md | 52 madrat-2.3.1/madrat/build/vignette.rds |binary madrat-2.3.1/madrat/inst/doc/madrat-caching.R |only madrat-2.3.1/madrat/inst/doc/madrat-caching.Rmd |only madrat-2.3.1/madrat/inst/doc/madrat-caching.html |only madrat-2.3.1/madrat/inst/doc/madrat.R | 48 madrat-2.3.1/madrat/inst/doc/madrat.Rmd | 94 - madrat-2.3.1/madrat/inst/doc/madrat.html | 426 ++++--- madrat-2.3.1/madrat/inst/extdata/country2iso.csv | 39 madrat-2.3.1/madrat/inst/extdata/regionmappingH12.csv | 500 ++++----- madrat-2.3.1/madrat/man/cacheArgumentsHash.Rd |only madrat-2.3.1/madrat/man/cacheCopy.Rd |only madrat-2.3.1/madrat/man/cacheGet.Rd |only madrat-2.3.1/madrat/man/cacheName.Rd |only madrat-2.3.1/madrat/man/cachePut.Rd |only madrat-2.3.1/madrat/man/calcOutput.Rd | 61 - madrat-2.3.1/madrat/man/calcTauTotal.Rd | 5 madrat-2.3.1/madrat/man/compareData.Rd |only madrat-2.3.1/madrat/man/downloadSource.Rd | 35 madrat-2.3.1/madrat/man/findBottlenecks.Rd |only madrat-2.3.1/madrat/man/fingerprint.Rd | 46 madrat-2.3.1/madrat/man/fullEXAMPLE.Rd | 6 madrat-2.3.1/madrat/man/getCalculations.Rd | 2 madrat-2.3.1/madrat/man/getCode.Rd |only madrat-2.3.1/madrat/man/getConfig.Rd | 4 madrat-2.3.1/madrat/man/getDependencies.Rd |only madrat-2.3.1/madrat/man/getMadratGraph.Rd |only madrat-2.3.1/madrat/man/getMadratInfo.Rd |only madrat-2.3.1/madrat/man/getMainfolder.Rd | 4 madrat-2.3.1/madrat/man/getNonDefaultArguments.Rd |only madrat-2.3.1/madrat/man/getSources.Rd | 19 madrat-2.3.1/madrat/man/installedMadratUniverse.Rd |only madrat-2.3.1/madrat/man/madapply.Rd | 62 - madrat-2.3.1/madrat/man/madlapply.Rd | 61 - madrat-2.3.1/madrat/man/metadataGFZ.Rd |only madrat-2.3.1/madrat/man/readSource.Rd | 11 madrat-2.3.1/madrat/man/readTau.Rd | 5 madrat-2.3.1/madrat/man/regionscode.Rd | 20 madrat-2.3.1/madrat/man/retrieveData.Rd | 18 madrat-2.3.1/madrat/man/robustOrder.Rd |only madrat-2.3.1/madrat/man/setConfig.Rd | 58 - madrat-2.3.1/madrat/man/toolAggregate.Rd | 43 madrat-2.3.1/madrat/man/toolCodeLabels.Rd |only madrat-2.3.1/madrat/man/toolConditionalReplace.Rd | 6 madrat-2.3.1/madrat/man/toolConvertMapping.Rd | 17 madrat-2.3.1/madrat/man/toolCountry2isocode.Rd | 4 madrat-2.3.1/madrat/man/toolCountryFill.Rd | 19 madrat-2.3.1/madrat/man/toolFillWithRegionAvg.Rd | 18 madrat-2.3.1/madrat/man/toolGetMapping.Rd | 19 madrat-2.3.1/madrat/man/toolISOhistorical.Rd | 3 madrat-2.3.1/madrat/man/toolOrderCells.Rd |only madrat-2.3.1/madrat/man/toolSplitSubtype.Rd |only madrat-2.3.1/madrat/man/toolSubtypeSelect.Rd | 2 madrat-2.3.1/madrat/man/toolTimeAverage.Rd |only madrat-2.3.1/madrat/man/toolTimeSpline.Rd |only madrat-2.3.1/madrat/man/toolXlargest.Rd | 11 madrat-2.3.1/madrat/man/toolendmessage.Rd | 24 madrat-2.3.1/madrat/man/toolstartmessage.Rd | 25 madrat-2.3.1/madrat/man/vcat.Rd | 12 madrat-2.3.1/madrat/tests/testthat/test-cacheCopy.R |only madrat-2.3.1/madrat/tests/testthat/test-caching.R |only madrat-2.3.1/madrat/tests/testthat/test-calcOutput.R |only madrat-2.3.1/madrat/tests/testthat/test-compareData.R |only madrat-2.3.1/madrat/tests/testthat/test-config.R |only madrat-2.3.1/madrat/tests/testthat/test-findBottlenecks.R |only madrat-2.3.1/madrat/tests/testthat/test-fingerprint.R |only madrat-2.3.1/madrat/tests/testthat/test-getCalculations.R |only madrat-2.3.1/madrat/tests/testthat/test-getCode.R |only madrat-2.3.1/madrat/tests/testthat/test-getDependencies.R |only madrat-2.3.1/madrat/tests/testthat/test-getISOlist.R |only madrat-2.3.1/madrat/tests/testthat/test-getMadratGraph.R |only madrat-2.3.1/madrat/tests/testthat/test-getMadratInfo.R |only madrat-2.3.1/madrat/tests/testthat/test-getNonDefaultArguments.R |only madrat-2.3.1/madrat/tests/testthat/test-getSources.R |only madrat-2.3.1/madrat/tests/testthat/test-metadataGFZ.R |only madrat-2.3.1/madrat/tests/testthat/test-prepFunctionName.R |only madrat-2.3.1/madrat/tests/testthat/test-readSource.R |only madrat-2.3.1/madrat/tests/testthat/test-regionscode.R |only madrat-2.3.1/madrat/tests/testthat/test-retrieveData.R |only madrat-2.3.1/madrat/tests/testthat/test-robustOrder.R |only madrat-2.3.1/madrat/tests/testthat/test-toolAggregate.R | 232 +++- madrat-2.3.1/madrat/tests/testthat/test-toolCountry2isocode.R |only madrat-2.3.1/madrat/tests/testthat/test-toolCountryFill.R |only madrat-2.3.1/madrat/tests/testthat/test-toolFillWithRegionAvg.R |only madrat-2.3.1/madrat/tests/testthat/test-toolGetMapping.R |only madrat-2.3.1/madrat/tests/testthat/test-toolISOhistorical.R |only madrat-2.3.1/madrat/tests/testthat/test-toolOrderCells.R |only madrat-2.3.1/madrat/tests/testthat/test-toolSplitSubtype.R |only madrat-2.3.1/madrat/tests/testthat/test-toolTimeAverage.R |only madrat-2.3.1/madrat/tests/testthat/test-variousTools.R |only madrat-2.3.1/madrat/vignettes/madrat-caching.Rmd |only madrat-2.3.1/madrat/vignettes/madrat.Rmd | 94 - 162 files changed, 3296 insertions(+), 2601 deletions(-)
Title: Geostatistical Modelling with Likelihood and Bayes
Description: Geostatistical modelling facilities using 'Raster' and 'SpatialPoints'
objects are provided. Non-Gaussian models are fit using 'INLA', and Gaussian
geostatistical models use Maximum Likelihood Estimation. For details see Brown (2015) <doi:10.18637/jss.v063.i12>.
Author: Patrick Brown <patrick.brown@utoronto.ca>[aut, cre], Robert Hijmans [ctb]
Maintainer: Patrick Brown <patrick.brown@utoronto.ca>
Diff between geostatsp versions 1.8.5 dated 2021-03-18 and 1.8.6 dated 2021-10-05
DESCRIPTION | 12 ++++---- MD5 | 66 ++++++++++++++++++++++++------------------------- R/0gm.R | 4 ++ R/RFsimulate.R | 12 +++++--- R/lgcp.R | 4 ++ R/matern.R | 6 ++-- R/param.R | 20 +++++++++----- build/geostatsp.pdf |binary build/vignette.rds |binary data/gambiaUTM.RData |binary data/loaloa.RData |binary data/murder.RData |binary data/rongelapUTM.RData |binary data/swissRain.RData |binary data/swissRainR.RData |binary data/torontoPop.RData |binary data/wheat.RData |binary inst/doc/glgm.R | 1 inst/doc/glgm.Rnw | 1 inst/doc/glgm.pdf |binary inst/doc/lgcp.R | 29 +++++++++++---------- inst/doc/lgcp.Rnw | 29 +++++++++++---------- inst/doc/lgcp.pdf |binary man/RFsimulate.Rd | 13 +++------ man/loaloa.Rd | 4 ++ src/geostatsp.h | 11 ++++++++ src/gmrfEdge.c | 2 - src/gmrfLik.c | 18 ++++++++----- src/matern.c | 36 ++++++++++++++------------ src/maternLogL.c | 18 ++++++++----- tests/lgmRaster.R | 8 ++++- tests/profLlgm.R | 3 +- vignettes/glgm.Rnw | 1 vignettes/lgcp.Rnw | 29 +++++++++++---------- 34 files changed, 186 insertions(+), 141 deletions(-)
Title: Co-Ranking Matrix
Description: Calculates the co-ranking matrix to assess the
quality of a dimensionality reduction.
Author: Guido Kraemer
Maintainer: Guido Kraemer <guido.kraemer@uni-leipzig.de>
Diff between coRanking versions 0.2.1 dated 2020-02-12 and 0.2.2 dated 2021-10-05
DESCRIPTION | 12 +- MD5 | 25 ++-- NAMESPACE | 1 R/coranking-package.R | 9 + R/r_nx.R | 15 ++ README.md | 1 build/vignette.rds |binary inst/doc/coranking.R | 17 ++- inst/doc/coranking.Rmd | 49 +++++---- inst/doc/coranking.html | 247 ++++++++++++++++++++++++++++------------------ man/Q_NX.Rd |only man/coRanking-package.Rd | 10 + tests/testthat/test_rnx.R | 24 +++- vignettes/coranking.Rmd | 49 +++++---- 14 files changed, 292 insertions(+), 167 deletions(-)
Title: Automated Deconvolution Augmentation of Profiles for Tissue
Specific Cells
Description: Tools to construct (or add to) cell-type signature matrices using flow sorted or single cell samples and deconvolve bulk gene expression data.
Useful for assessing the quality of single cell RNAseq experiments, estimating the accuracy of signature matrices, and determining cell-type spillover.
Please cite: Danziger SA et al. (2019) ADAPTS: Automated Deconvolution Augmentation of Profiles for Tissue Specific cells <doi:10.1371/journal.pone.0224693>.
Author: Samuel A Danziger
Maintainer: Samuel A Danziger <sam.danziger@gmail.com>
Diff between ADAPTS versions 1.0.6 dated 2020-10-17 and 1.0.21 dated 2021-10-05
DESCRIPTION | 12 +- MD5 | 35 +++--- NAMESPACE | 1 R/MakeSigMatrix.R | 152 ++++++++++++++++++--------- R/onlyDeconAlgorithms.R | 52 +++++++-- R/runLoops.R | 67 ++++++++--- build/vignette.rds |binary inst/doc/ADAPTS5.vignette.html.asis | 2 man/AugmentSigMatrix.Rd | 5 man/estCellPercent.DeconRNASeq.Rd | 4 man/estCellPercent.Rd | 17 ++- man/estCellPercent.proportionsInAdmixture.Rd | 2 man/loopTillConvergence.Rd | 7 - man/matrixToGenelist.Rd |only man/meanResults.Rd | 6 + man/remakeLM22p.Rd | 9 + man/scSample.Rd | 5 man/testAllSigMatrices.Rd | 19 +++ vignettes/ADAPTS5.vignette.html.asis | 2 19 files changed, 284 insertions(+), 113 deletions(-)
Title: Actuarial Functions and Heavy Tailed Distributions
Description: Functions and data sets for actuarial science:
modeling of loss distributions; risk theory and ruin theory;
simulation of compound models, discrete mixtures and compound
hierarchical models; credibility theory. Support for many additional
probability distributions to model insurance loss size and
frequency: 23 continuous heavy tailed distributions; the
Poisson-inverse Gaussian discrete distribution; zero-truncated and
zero-modified extensions of the standard discrete distributions.
Support for phase-type distributions commonly used to compute ruin
probabilities.
Author: Vincent Goulet [cre, aut],
Sébastien Auclair [ctb],
Christophe Dutang [aut],
Walter Garcia-Fontes [ctb],
Nicholas Langevin [ctb],
Xavier Milhaud [ctb],
Tommy Ouellet [ctb],
Alexandre Parent [ctb],
Mathieu Pigeon [aut],
Louis-Philippe Pouliot [ctb],
Jeffrey A. Ryan [aut] (Package API),
Robert Gentleman [aut] (Parts of the R to C interface),
Ross Ihaka [aut] (Parts of the R to C interface),
R Core Team [aut] (Parts of the R to C interface),
R Foundation [aut] (Parts of the R to C interface)
Maintainer: Vincent Goulet <vincent.goulet@act.ulaval.ca>
Diff between actuar versions 3.1-4 dated 2021-05-31 and 3.2-0 dated 2021-10-05
DESCRIPTION | 11 +++-- MD5 | 80 ++++++++++++++++++++++--------------------- NAMESPACE | 8 +++- R/CTE.R | 3 - R/Extract.grouped.data.R | 28 +++++++-------- R/VaR.R | 3 - R/elev.R | 2 - R/emm.R | 5 +- R/grouped.data.R | 4 +- R/hache.barycenter.R | 2 - R/hache.origin.R | 8 ++-- R/hist.grouped.data.R | 31 ++++++++-------- R/mean.grouped.data.R | 9 ++-- R/ogive.R | 19 +++++----- R/quantile.grouped.data.R | 17 ++++++++- R/simS.R | 4 +- R/var-methods.R |only demo/lossdist.R | 28 +++++++++------ inst/NEWS.Rd | 30 +++++++++++++++- inst/doc/actuar.pdf |binary inst/doc/coverage.pdf |binary inst/doc/credibility.pdf |binary inst/doc/distributions.pdf |binary inst/doc/modeling.R | 60 ++++++++++++++++++-------------- inst/doc/modeling.Rnw | 24 +++++++++--- inst/doc/modeling.pdf |binary inst/doc/risk.pdf |binary inst/doc/simulation.pdf |binary man/cm.Rd | 5 +- man/emm.Rd | 14 +++---- man/grouped.data.Rd | 4 +- man/hist.grouped.data.Rd | 2 - man/mde.Rd | 2 - man/mean.grouped.data.Rd | 12 ++++-- man/quantile.grouped.data.Rd | 18 ++++++++- man/rcompound.Rd | 4 +- man/rmixture.Rd | 2 - man/ruin.Rd | 2 - man/simul.Rd | 4 +- man/var-methods.Rd |only src/util.c | 24 +++++++----- vignettes/modeling.Rnw | 24 +++++++++--- 42 files changed, 303 insertions(+), 190 deletions(-)
Title: Scrape Lake Metadata Tables from Wikipedia
Description: Scrape lake metadata tables from Wikipedia <https://www.wikipedia.org/>.
Author: Jemma Stachelek [aut, cre] (<https://orcid.org/0000-0002-5924-2464>)
Maintainer: Jemma Stachelek <stachel2@msu.edu>
Diff between wikilake versions 0.5.0 dated 2021-02-09 and 0.6.0 dated 2021-10-05
DESCRIPTION | 14 +++++++------- MD5 | 20 +++++++++++--------- NAMESPACE | 1 + NEWS.md | 4 ++++ R/browser.R |only README.md | 3 +-- build/vignette.rds |binary inst/doc/scrape_michigan_lakes.R | 29 ++++++++++++++--------------- inst/doc/scrape_michigan_lakes.Rmd | 34 ++++++++++++++++------------------ inst/doc/scrape_michigan_lakes.html | 33 ++++++++++++++++++--------------- man/lake_wiki_browser.Rd |only vignettes/scrape_michigan_lakes.Rmd | 34 ++++++++++++++++------------------ 12 files changed, 88 insertions(+), 84 deletions(-)
Title: Spatial Data Analysis
Description: Methods for spatial data analysis with raster and vector data. Raster methods allow for low-level data manipulation as well as high-level global, local, zonal, and focal computation. The predict and interpolate methods facilitate the use of regression type (interpolation, machine learning) models for spatial prediction, including with satellite remote sensing data. Processing of very large files is supported. See the manual and tutorials on <https://rspatial.org/terra/> to get started. 'terra' is very similar to the 'raster' package; but 'terra' can do more, is easier to use, and it is faster.
Author: Robert J. Hijmans [cre, aut] (<https://orcid.org/0000-0001-5872-2872>),
Roger Bivand [ctb] (<https://orcid.org/0000-0003-2392-6140>),
Karl Forner [ctb],
Jeroen Ooms [ctb] (<https://orcid.org/0000-0002-4035-0289>),
Edzer Pebesma [ctb] (<https://orcid.org/0000-0001-8049-7069>)
Maintainer: Robert J. Hijmans <r.hijmans@gmail.com>
Diff between terra versions 1.3-22 dated 2021-08-20 and 1.4-7 dated 2021-10-05
DESCRIPTION | 12 MD5 | 161 +++++----- NAMESPACE | 4 NEWS.md | 58 +++ R/Agenerics.R | 24 + R/Zdeprecated.R | 2 R/click.R | 4 R/coerce.R | 73 ++-- R/colors.R | 2 R/crs.R | 84 +++-- R/extract.R | 115 ++++++- R/focal.R | 4 R/generics.R | 88 +++++ R/lapp.R | 4 R/levels.R | 59 +++ R/options.R | 4 R/plot.R | 22 - R/plot2rasters.R | 11 R/plotRGB.R | 2 R/plot_raster.R | 49 +-- R/plot_scale.R | 2 R/plot_vector.R | 13 R/rast.R | 66 ++-- R/relate.R | 1 R/replace.R | 28 - R/sample.R | 48 ++- R/show.R | 23 + R/spatvec.R | 4 R/tapp.R | 2 R/values.R | 30 + R/write.R | 1 R/zonal.R | 15 configure | 3 configure.ac | 29 - inst/tinytest/test_geom.R | 31 -- man/clamp.Rd | 3 man/coerce.Rd | 2 man/compareGeom.Rd | 5 man/coords.Rd | 7 man/crs.Rd | 5 man/ext.Rd | 1 man/extract.Rd | 3 man/figures |only man/freq.Rd | 13 man/match.Rd | 2 man/names.Rd | 2 man/origin.Rd | 11 man/plot.Rd | 5 man/plotRGB.Rd | 2 man/rast.Rd | 5 man/sample.Rd | 9 man/shade.Rd | 4 man/sources.Rd | 7 man/summarize-generics.Rd | 5 man/summary.Rd | 7 man/terra-package.Rd | 13 man/values.Rd | 3 man/writeRaster.Rd | 7 man/xyCellFrom.Rd | 6 src/RcppExports.cpp | 5 src/RcppFunctions.cpp | 2 src/RcppModule.cpp | 9 src/arith.cpp | 4 src/distRaster.cpp | 35 -- src/focal.cpp | 691 ++++++++++++++++++++++------------------------ src/gdal_algs.cpp | 13 src/gdalio.cpp | 39 +- src/gdalio.h | 2 src/geos_methods.cpp | 10 src/raster_methods.cpp | 16 - src/raster_stats.cpp | 2 src/rasterize.cpp | 16 - src/read_gdal.cpp | 53 +-- src/sample.cpp | 87 +++++ src/spatBase.cpp | 26 + src/spatBase.h | 5 src/spatRaster.cpp | 21 - src/spatRaster.h | 23 - src/spatSources.cpp | 7 src/write.cpp | 9 src/write_gdal.cpp | 2 src/write_ogr.cpp | 5 82 files changed, 1419 insertions(+), 868 deletions(-)
Title: Structural Equation Models
Description: Functions for fitting general linear structural
equation models (with observed and latent variables) using the RAM approach,
and for fitting structural equations in observed-variable models by two-stage least squares.
Author: John Fox [aut, cre],
Zhenghua Nie [aut],
Jarrett Byrnes [aut],
Michael Culbertson [ctb],
Saikat DebRoy [ctb],
Michael Friendly [ctb],
Benjamin Goodrich [ctb],
Richard H. Jones [ctb],
Adam Kramer [ctb],
Georges Monette [ctb],
Frederick Novomestky [ctb],
R-Core [ctb]
Maintainer: John Fox <jfox@mcmaster.ca>
Diff between sem versions 3.1-11 dated 2020-05-19 and 3.1-13 dated 2021-10-05
DESCRIPTION | 19 +- MD5 | 27 +-- NAMESPACE | 268 ++++++++++++++++++------------------- NEWS | 267 +++++++++++++++++++------------------ R/from-matrixcalc.R |only data/Bollen.rda |binary data/CNES.rda |binary data/HS.data.rda |binary data/Tests.rda |binary man/bootSem.Rd | 370 ++++++++++++++++++++++++++-------------------------- man/miSem.Rd | 276 +++++++++++++++++++------------------- src/csem.cpp | 36 ++--- src/csemnlm.c | 8 - src/csemnlm.h | 8 + src/uncmin.c | 42 ++--- 15 files changed, 671 insertions(+), 650 deletions(-)
Title: Multivariate State Space Models
Description: Provides methods to perform parameter estimation and
make analysis of multivariate observed outcomes through time which depends
on a latent state variable. All methods scale well in the dimension
of the observed outcomes at each time point. The package contains an
implementation of a Laplace approximation, particle filters like
suggested by Lin, Zhang, Cheng, & Chen (2005)
<doi:10.1198/016214505000000349>, and the gradient and observed information
matrix approximation suggested by Poyiadjis, Doucet, & Singh (2011)
<doi:10.1093/biomet/asq062>.
Author: Benjamin Christoffersen [cre, aut]
(<https://orcid.org/0000-0002-7182-1346>),
Anthony Williams [cph]
Maintainer: Benjamin Christoffersen <boennecd@gmail.com>
Diff between mssm versions 0.1.4 dated 2020-12-15 and 0.1.5 dated 2021-10-05
DESCRIPTION | 15 +++++++++------ MD5 | 10 +++++----- README.md | 2 +- src/RcppExports.cpp | 5 +++++ tests/testthat/test-gets-old-mssm.R | 9 ++++++++- tests/testthat/test-man-pages.R | 2 +- 6 files changed, 29 insertions(+), 14 deletions(-)
Title: Visualisations for Generalized Additive Models
Description: Extension of the 'mgcv' package, providing visual tools for Generalized Additive Models that exploit the additive structure of such models, scale to large data sets and can be used in conjunction with a wide range of response distributions. The focus is providing visual methods for better understanding the model output and for aiding model checking and development beyond simple exponential family regression. The graphical framework is based on the layering system provided by 'ggplot2'.
Author: Matteo Fasiolo [aut, cre],
Raphael Nedellec [aut],
Yannig Goude [ctb],
Christian Capezza [ctb],
Simon N. Wood [ctb]
Maintainer: Matteo Fasiolo <matteo.fasiolo@gmail.com>
Diff between mgcViz versions 0.1.8 dated 2021-08-21 and 0.1.9 dated 2021-10-05
mgcViz-0.1.8/mgcViz/R/I_prepareInnerSI.R |only mgcViz-0.1.8/mgcViz/R/I_prepareNested.R |only mgcViz-0.1.8/mgcViz/R/plot_si_smooth_1D.R |only mgcViz-0.1.9/mgcViz/DESCRIPTION | 12 mgcViz-0.1.9/mgcViz/MD5 | 25 mgcViz-0.1.9/mgcViz/NAMESPACE | 7 mgcViz-0.1.9/mgcViz/R/plotRGL_mgcv_smooth_2D.R | 48 mgcViz-0.1.9/mgcViz/R/plotRGL_mgcv_smooth_MD.R | 13 mgcViz-0.1.9/mgcViz/build/vignette.rds |binary mgcViz-0.1.9/mgcViz/inst/doc/mgcviz.R | 1 mgcViz-0.1.9/mgcViz/inst/doc/mgcviz.html | 8024 ---------------------- mgcViz-0.1.9/mgcViz/inst/doc/mgcviz.rmd | 1 mgcViz-0.1.9/mgcViz/man/plotRGL.mgcv.smooth.2D.Rd | 9 mgcViz-0.1.9/mgcViz/man/plotRGL.mgcv.smooth.MD.Rd | 7 mgcViz-0.1.9/mgcViz/vignettes/mgcviz.rmd | 1 15 files changed, 136 insertions(+), 8012 deletions(-)
Title: Manage Spatial Metadata for Known Locations
Description: A suite of utility functions for discovering and managing metadata
associated with spatially unique "known locations".
Author: Jonathan Callahan [aut, cre],
Eli Grosman [aut]
Maintainer: Jonathan Callahan <jonathan.s.callahan@gmail.com>
Diff between MazamaLocationUtils versions 0.1.13 dated 2021-01-28 and 0.2.0 dated 2021-10-05
MazamaLocationUtils-0.1.13/MazamaLocationUtils/R/table_findOverlappingLocations.R |only MazamaLocationUtils-0.1.13/MazamaLocationUtils/man/table_findOverlappingLocations.Rd |only MazamaLocationUtils-0.1.13/MazamaLocationUtils/tests/testthat/test-table_findOverlappingLocations.R |only MazamaLocationUtils-0.2.0/MazamaLocationUtils/DESCRIPTION | 16 MazamaLocationUtils-0.2.0/MazamaLocationUtils/MD5 | 151 - MazamaLocationUtils-0.2.0/MazamaLocationUtils/NAMESPACE | 12 MazamaLocationUtils-0.2.0/MazamaLocationUtils/NEWS.md | 28 MazamaLocationUtils-0.2.0/MazamaLocationUtils/R/MazamaLocationUtils.R | 2 MazamaLocationUtils-0.2.0/MazamaLocationUtils/R/data.R | 6 MazamaLocationUtils-0.2.0/MazamaLocationUtils/R/location_createID.R | 4 MazamaLocationUtils-0.2.0/MazamaLocationUtils/R/location_getCensusBlock.R | 12 MazamaLocationUtils-0.2.0/MazamaLocationUtils/R/location_getSingleAddress_Photon.R | 4 MazamaLocationUtils-0.2.0/MazamaLocationUtils/R/location_getSingleAddress_TexasAM.R | 4 MazamaLocationUtils-0.2.0/MazamaLocationUtils/R/location_getSingleElevation_USGS.R | 4 MazamaLocationUtils-0.2.0/MazamaLocationUtils/R/location_initialize.R | 4 MazamaLocationUtils-0.2.0/MazamaLocationUtils/R/table_addColumn.R | 10 MazamaLocationUtils-0.2.0/MazamaLocationUtils/R/table_addCoreMetadata.R |only MazamaLocationUtils-0.2.0/MazamaLocationUtils/R/table_addLocation.R | 35 MazamaLocationUtils-0.2.0/MazamaLocationUtils/R/table_addSingleLocation.R | 28 MazamaLocationUtils-0.2.0/MazamaLocationUtils/R/table_export.R | 4 MazamaLocationUtils-0.2.0/MazamaLocationUtils/R/table_findAdjacentDistances.R |only MazamaLocationUtils-0.2.0/MazamaLocationUtils/R/table_findAdjacentLocations.R |only MazamaLocationUtils-0.2.0/MazamaLocationUtils/R/table_getLocationID.R | 61 MazamaLocationUtils-0.2.0/MazamaLocationUtils/R/table_getNearestDistance.R | 64 MazamaLocationUtils-0.2.0/MazamaLocationUtils/R/table_getNearestLocation.R | 29 MazamaLocationUtils-0.2.0/MazamaLocationUtils/R/table_getRecordIndex.R | 8 MazamaLocationUtils-0.2.0/MazamaLocationUtils/R/table_initializeExisting.R | 299 +-- MazamaLocationUtils-0.2.0/MazamaLocationUtils/R/table_leaflet.R |only MazamaLocationUtils-0.2.0/MazamaLocationUtils/R/table_leafletAdd.R |only MazamaLocationUtils-0.2.0/MazamaLocationUtils/R/table_load.R | 2 MazamaLocationUtils-0.2.0/MazamaLocationUtils/R/table_removeColumn.R | 6 MazamaLocationUtils-0.2.0/MazamaLocationUtils/R/table_removeRecord.R | 10 MazamaLocationUtils-0.2.0/MazamaLocationUtils/R/table_save.R | 6 MazamaLocationUtils-0.2.0/MazamaLocationUtils/R/table_updateColumn.R | 22 MazamaLocationUtils-0.2.0/MazamaLocationUtils/R/table_updateSingleRecord.R | 6 MazamaLocationUtils-0.2.0/MazamaLocationUtils/R/utils.R | 79 MazamaLocationUtils-0.2.0/MazamaLocationUtils/README.md | 32 MazamaLocationUtils-0.2.0/MazamaLocationUtils/build/vignette.rds |binary MazamaLocationUtils-0.2.0/MazamaLocationUtils/data/id_monitors_500.rda |binary MazamaLocationUtils-0.2.0/MazamaLocationUtils/data/or_monitors_500.rda |binary MazamaLocationUtils-0.2.0/MazamaLocationUtils/data/wa_airfire_meta.rda |binary MazamaLocationUtils-0.2.0/MazamaLocationUtils/data/wa_monitors_500.rda |binary MazamaLocationUtils-0.2.0/MazamaLocationUtils/inst/doc/MazamaLocationUtils.R | 10 MazamaLocationUtils-0.2.0/MazamaLocationUtils/inst/doc/MazamaLocationUtils.Rmd | 24 MazamaLocationUtils-0.2.0/MazamaLocationUtils/inst/doc/MazamaLocationUtils.html | 814 +++++----- MazamaLocationUtils-0.2.0/MazamaLocationUtils/man/MazamaLocationUtils.Rd | 2 MazamaLocationUtils-0.2.0/MazamaLocationUtils/man/id_monitors_500.Rd | 2 MazamaLocationUtils-0.2.0/MazamaLocationUtils/man/location_createID.Rd | 4 MazamaLocationUtils-0.2.0/MazamaLocationUtils/man/location_getCensusBlock.Rd | 4 MazamaLocationUtils-0.2.0/MazamaLocationUtils/man/location_getSingleAddress_Photon.Rd | 4 MazamaLocationUtils-0.2.0/MazamaLocationUtils/man/location_getSingleAddress_TexasAM.Rd | 4 MazamaLocationUtils-0.2.0/MazamaLocationUtils/man/location_getSingleElevation_USGS.Rd | 4 MazamaLocationUtils-0.2.0/MazamaLocationUtils/man/location_initialize.Rd | 4 MazamaLocationUtils-0.2.0/MazamaLocationUtils/man/or_monitors_500.Rd | 2 MazamaLocationUtils-0.2.0/MazamaLocationUtils/man/table_addColumn.Rd | 8 MazamaLocationUtils-0.2.0/MazamaLocationUtils/man/table_addCoreMetadata.Rd |only MazamaLocationUtils-0.2.0/MazamaLocationUtils/man/table_addLocation.Rd | 18 MazamaLocationUtils-0.2.0/MazamaLocationUtils/man/table_addSingleLocation.Rd | 16 MazamaLocationUtils-0.2.0/MazamaLocationUtils/man/table_export.Rd | 2 MazamaLocationUtils-0.2.0/MazamaLocationUtils/man/table_findAdjacentDistances.Rd |only MazamaLocationUtils-0.2.0/MazamaLocationUtils/man/table_findAdjacentLocations.Rd |only MazamaLocationUtils-0.2.0/MazamaLocationUtils/man/table_getLocationID.Rd | 32 MazamaLocationUtils-0.2.0/MazamaLocationUtils/man/table_getNearestDistance.Rd | 32 MazamaLocationUtils-0.2.0/MazamaLocationUtils/man/table_getNearestLocation.Rd | 18 MazamaLocationUtils-0.2.0/MazamaLocationUtils/man/table_getRecordIndex.Rd | 6 MazamaLocationUtils-0.2.0/MazamaLocationUtils/man/table_initializeExisting.Rd | 30 MazamaLocationUtils-0.2.0/MazamaLocationUtils/man/table_leaflet.Rd |only MazamaLocationUtils-0.2.0/MazamaLocationUtils/man/table_leafletAdd.Rd |only MazamaLocationUtils-0.2.0/MazamaLocationUtils/man/table_load.Rd | 2 MazamaLocationUtils-0.2.0/MazamaLocationUtils/man/table_removeColumn.Rd | 4 MazamaLocationUtils-0.2.0/MazamaLocationUtils/man/table_removeRecord.Rd | 8 MazamaLocationUtils-0.2.0/MazamaLocationUtils/man/table_save.Rd | 4 MazamaLocationUtils-0.2.0/MazamaLocationUtils/man/table_updateColumn.Rd | 20 MazamaLocationUtils-0.2.0/MazamaLocationUtils/man/table_updateSingleRecord.Rd | 4 MazamaLocationUtils-0.2.0/MazamaLocationUtils/man/validateLocationTbl.Rd |only MazamaLocationUtils-0.2.0/MazamaLocationUtils/man/validateLonLat.Rd | 4 MazamaLocationUtils-0.2.0/MazamaLocationUtils/man/validateLonsLats.Rd | 9 MazamaLocationUtils-0.2.0/MazamaLocationUtils/man/wa_monitors_500.Rd | 2 MazamaLocationUtils-0.2.0/MazamaLocationUtils/tests/testthat/test-table_findAdjacentDistances.R |only MazamaLocationUtils-0.2.0/MazamaLocationUtils/tests/testthat/test-table_getLocationID.R | 6 MazamaLocationUtils-0.2.0/MazamaLocationUtils/tests/testthat/test-table_getNearestDistance.R | 4 MazamaLocationUtils-0.2.0/MazamaLocationUtils/tests/testthat/test-table_getNearestLocation.R | 4 MazamaLocationUtils-0.2.0/MazamaLocationUtils/tests/testthat/test-table_updateColumn.R | 2 MazamaLocationUtils-0.2.0/MazamaLocationUtils/vignettes/MazamaLocationUtils.Rmd | 24 84 files changed, 1152 insertions(+), 933 deletions(-)
More information about MazamaLocationUtils at CRAN
Permanent link
Title: Introduction to Statistical Learning, Second Edition
Description: We provide the collection of data-sets used in the book 'An Introduction to Statistical Learning with Applications in R, Second Edition'. These include many data-sets that we used in the first edition (some with minor changes), and some new datasets.
Author: Gareth James [aut],
Daniela Witten [aut],
Trevor Hastie [aut, cre],
Rob Tibshirani [aut],
Balasubramanian Narasimhan [ctb]
Maintainer: Trevor Hastie <hastie@stanford.edu>
Diff between ISLR2 versions 1.2 dated 2021-09-14 and 1.3 dated 2021-10-05
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- inst/helpers/install.R | 2 +- 3 files changed, 7 insertions(+), 7 deletions(-)
Title: Diffs for R Objects
Description: Generate a colorized diff of two R objects for an intuitive
visualization of their differences.
Author: Brodie Gaslam [aut, cre],
Michael B. Allen [ctb, cph] (Original C implementation of Myers Diff
Algorithm)
Maintainer: Brodie Gaslam <brodie.gaslam@yahoo.com>
Diff between diffobj versions 0.3.4 dated 2021-03-22 and 0.3.5 dated 2021-10-05
diffobj-0.3.4/diffobj/tests/startup.Rs |only diffobj-0.3.5/diffobj/DESCRIPTION | 9 ++---- diffobj-0.3.5/diffobj/MD5 | 28 +++++++++---------- diffobj-0.3.5/diffobj/NEWS.md | 17 +++++++++-- diffobj-0.3.5/diffobj/R/guides.R | 30 +++++++++++---------- diffobj-0.3.5/diffobj/R/misc.R | 2 - diffobj-0.3.5/diffobj/R/options.R | 12 ++++---- diffobj-0.3.5/diffobj/build/vignette.rds |binary diffobj-0.3.5/diffobj/inst/doc/diffobj.html | 9 +++++- diffobj-0.3.5/diffobj/inst/doc/embed.html | 9 +++++- diffobj-0.3.5/diffobj/tests/_helper/check.R |only diffobj-0.3.5/diffobj/tests/test-diffChr.R | 3 ++ diffobj-0.3.5/diffobj/tests/test-diffChr.Rout.save | 16 +++++++---- diffobj-0.3.5/diffobj/tests/test-guide.R | 7 ++++ diffobj-0.3.5/diffobj/tests/test-guide.Rout.save | 22 +++++++++++---- diffobj-0.3.5/diffobj/tests/zz-test-check.R | 22 --------------- 16 files changed, 112 insertions(+), 74 deletions(-)
Title: Delaunay Triangulation and Dirichlet (Voronoi) Tessellation
Description: Calculates the Delaunay triangulation and the Dirichlet
or Voronoi tessellation (with respect to the entire plane) of
a planar point set. Plots triangulations and tessellations in
various ways. Clips tessellations to sub-windows. Calculates
perimeters of tessellations. Summarises information about
the tiles of the tessellation. Calculates the centroidal
Voronoi (Dirichlet) tessellation using Lloyd's algorithm.
Author: Rolf Turner
Maintainer: Rolf Turner <r.turner@auckland.ac.nz>
Diff between deldir versions 0.2-10 dated 2021-02-16 and 1.0-2 dated 2021-10-05
deldir-0.2-10/deldir/R/dumpts.R |only deldir-0.2-10/deldir/build |only deldir-0.2-10/deldir/man/divchain.default.Rd |only deldir-0.2-10/deldir/man/divchain.deldir.Rd |only deldir-1.0-2/deldir/ChangeLog | 69 +++++ deldir-1.0-2/deldir/DESCRIPTION | 8 deldir-1.0-2/deldir/MD5 | 90 +++---- deldir-1.0-2/deldir/NAMESPACE | 1 deldir-1.0-2/deldir/R/First.R | 38 +-- deldir-1.0-2/deldir/R/deldir.R | 313 +++++++++++-------------- deldir-1.0-2/deldir/R/divchain.default.R | 10 deldir-1.0-2/deldir/R/divchain.deldir.R | 7 deldir-1.0-2/deldir/R/getCol.R | 2 deldir-1.0-2/deldir/R/lawSummary.R | 17 - deldir-1.0-2/deldir/R/plot.deldir.R | 115 +++++---- deldir-1.0-2/deldir/R/plot.tile.list.R | 5 deldir-1.0-2/deldir/R/print.deldir.R | 9 deldir-1.0-2/deldir/R/triang.list.R | 3 deldir-1.0-2/deldir/data/grapherXmpl.rda |binary deldir-1.0-2/deldir/data/niProperties.rda |binary deldir-1.0-2/deldir/data/seaweed.rda |binary deldir-1.0-2/deldir/data/volTriPoints.rda |binary deldir-1.0-2/deldir/inst/ratfor/binsrt.r | 22 - deldir-1.0-2/deldir/inst/ratfor/delout.r | 8 deldir-1.0-2/deldir/inst/ratfor/delseg.r | 6 deldir-1.0-2/deldir/inst/ratfor/dirout.r | 8 deldir-1.0-2/deldir/inst/ratfor/dirseg.r | 8 deldir-1.0-2/deldir/inst/ratfor/master.r | 14 - deldir-1.0-2/deldir/man/cvt.Rd | 4 deldir-1.0-2/deldir/man/deldir-internal.Rd | 2 deldir-1.0-2/deldir/man/deldir.Rd | 336 +++++++++++---------------- deldir-1.0-2/deldir/man/divchain.Rd | 99 +++++-- deldir-1.0-2/deldir/man/lawSummary.Rd | 11 deldir-1.0-2/deldir/man/plot.deldir.Rd | 88 +++---- deldir-1.0-2/deldir/man/plot.divchain.Rd | 6 deldir-1.0-2/deldir/man/plot.tile.list.Rd | 97 ++++--- deldir-1.0-2/deldir/man/tile.centroids.Rd | 7 deldir-1.0-2/deldir/man/tile.list.Rd | 8 deldir-1.0-2/deldir/man/tileArea.Rd | 2 deldir-1.0-2/deldir/man/triMat.Rd | 4 deldir-1.0-2/deldir/man/triang.list.Rd | 18 - deldir-1.0-2/deldir/man/which.tile.Rd | 6 deldir-1.0-2/deldir/src/binsrt.f | 18 - deldir-1.0-2/deldir/src/delout.f | 6 deldir-1.0-2/deldir/src/delseg.f | 6 deldir-1.0-2/deldir/src/dirout.f | 6 deldir-1.0-2/deldir/src/dirseg.f | 10 deldir-1.0-2/deldir/src/master.f | 18 - 48 files changed, 771 insertions(+), 734 deletions(-)
Title: Assessing Skill of Climate Forecasts on Seasonal-to-Decadal
Timescales
Description: Exploits dynamical seasonal forecasts in order to provide
information relevant to stakeholders at the seasonal timescale. The package
contains process-based methods for forecast calibration, bias correction,
statistical and stochastic downscaling, optimal forecast combination and
multivariate verification, as well as basic and advanced tools to obtain
tailored products. This package was developed in the context of the
ERA4CS project MEDSCOPE and the H2020 S2S4E project.
Doblas-Reyes et al. (2005) <doi:10.1111/j.1600-0870.2005.00104.x>.
Mishra et al. (2018) <doi:10.1007/s00382-018-4404-z>.
Sanchez-Garcia et al. (2019) <doi:10.5194/asr-16-165-2019>.
Straus et al. (2007) <doi:10.1175/JCLI4070.1>.
Terzago et al. (2018) <doi:10.5194/nhess-18-2825-2018>.
Torralba et al. (2017) <doi:10.1175/JAMC-D-16-0204.1>.
D'Onofrio et al. (2014) <doi:10.1175/JHM-D-13-096.1>.
Verfaillie et al. (2017) <doi:10.5194/gmd-10-4257-2017>.
Van Schaeybroeck et al. (2019) <doi:10.1016/B978-0-12-812372-0.00010-8>.
Yiou et al. (2013) <doi:10.1007/s00382-012-1626-3>.
Author: Nuria Perez-Zanon [aut, cre] (<https://orcid.org/0000-0001-8568-3071>),
Louis-Philippe Caron [aut] (<https://orcid.org/0000-0001-5221-0147>),
Carmen Alvarez-Castro [aut] (<https://orcid.org/0000-0002-9958-010X>),
Lauriane Batte [aut],
Carlos Delgado [aut],
Jost von Hardenberg [aut] (<https://orcid.org/0000-0002-5312-8070>),
Llorenç LLedo [aut],
Nicolau Manubens [aut],
Lluís Palma [aut],
Eroteida Sanchez-Garcia [aut],
Bert van Schaeybroeck [aut],
Veronica Torralba [aut],
Deborah Verfaillie [aut],
Filippo Cali Quaglia [ctb],
Maria M. Chaves-Montero [ctb],
Chihchung Chou [ctb],
Nicola Cortesi [ctb],
Susanna Corti [ctb],
Paolo Davini [ctb],
Gildas Dayon [ctb],
Marta Dominguez [ctb],
Federico Fabiano [ctb],
Ignazio Giuntoli [ctb],
Raul Marcos [ctb],
Paola Marson [ctb],
Niti Mishra [ctb],
Jesus Peña [ctb],
Francesc Roura-Adserias [ctb],
Silvia Terzago [ctb],
Danila Volpi [ctb],
BSC-CNS [cph]
Maintainer: Nuria Perez-Zanon <nuria.perez@bsc.es>
Diff between CSTools versions 4.0.0 dated 2021-02-23 and 4.0.1 dated 2021-10-05
DESCRIPTION | 10 MD5 | 54 +++-- NAMESPACE | 8 NEWS.md | 19 + R/CST_Analogs.R | 62 +++-- R/CST_BiasCorrection.R | 127 ++++++++---- R/CST_Calibration.R | 12 - R/CST_DynBiasCorrection.R |only R/CST_ProxiesAttractor.R |only R/CST_SaveExp.R | 28 +- R/PlotCombinedMap.R | 28 ++ R/Predictability.R |only inst/doc/Analogs_vignette.Rmd | 4 inst/doc/Analogs_vignette.html | 2 inst/doc/RainFARM_vignette.Rmd | 2 inst/doc/RainFARM_vignette.html | 2 inst/doc/UseCase1_WindEvent_March2018.R |only inst/doc/UseCase2_PrecipitationDownscaling_RainFARM_RF100.R |only inst/doc/UseCase2_PrecipitationDownscaling_RainFARM_RF4.R |only inst/doc/UseCase3_data_preparation_SCHEME_model.R |only inst/doc/launch_UseCase2_PrecipitationDownscaling_RF4.sh |only man/Analogs.Rd | 29 +- man/BiasCorrection.Rd |only man/CST_BiasCorrection.Rd | 4 man/CST_DynBiasCorrection.Rd |only man/CST_ProxiesAttractor.Rd |only man/CST_SaveExp.Rd | 4 man/Calibration.Rd | 2 man/DynBiasCorrection.Rd |only man/PlotCombinedMap.Rd | 11 + man/Predictability.Rd |only man/ProxiesAttractor.Rd |only man/SaveExp.Rd | 7 vignettes/Analogs_vignette.Rmd | 4 vignettes/RainFARM_vignette.Rmd | 2 35 files changed, 301 insertions(+), 120 deletions(-)
Title: Adds Functionality to the R Markdown + Shiny Bootstrap Framework
Description: The Bootstrap framework lets you add some JavaScript functionality to your web site by
adding attributes to your HTML tags - Bootstrap takes care of the JavaScript
<https://getbootstrap.com/docs/3.3/javascript/>. If you are using R Markdown or Shiny, you can
use these functions to create collapsible sections, accordion panels, modals, tooltips,
popovers, and an accordion sidebar framework (not described at Bootstrap site).
Please note this package was designed for Bootstrap 3.3.
Author: Ian Lyttle [aut, cre, cph] (<https://orcid.org/0000-0001-9962-4849>),
Schneider Electric [cph],
Alex Shum [ctb],
Emily Bosak [ctb]
Maintainer: Ian Lyttle <ian.lyttle@se.com>
Diff between bsplus versions 0.1.2 dated 2020-06-25 and 0.1.3 dated 2021-10-05
DESCRIPTION | 20 ++++++++++---------- MD5 | 38 +++++++++++++++++++------------------- NEWS.md | 6 ++++++ R/accordion.R | 2 +- R/button.R | 2 +- R/carousel.R | 2 +- R/embed_popover.R | 2 +- R/embed_tooltip.R | 2 +- R/modal.R | 2 +- R/panel.R | 2 +- R/set_attr.R | 2 +- README.md | 17 +++++++---------- man/bs_accordion.Rd | 2 +- man/bs_button.Rd | 2 +- man/bs_carousel.Rd | 2 +- man/bs_embed_popover.Rd | 2 +- man/bs_embed_tooltip.Rd | 2 +- man/bs_modal.Rd | 2 +- man/bs_panel.Rd | 10 +++++----- man/bs_set_data.Rd | 2 +- 20 files changed, 62 insertions(+), 59 deletions(-)
Title: Hierarchical Modelling of Faecal Egg Counts
Description: An implementation of Bayesian hierarchical models
for faecal egg count data to assess anthelmintic
efficacy. Bayesian inference is done via MCMC sampling using 'Stan' <https://mc-stan.org/>.
Author: Craig Wang [aut, cre] (<https://orcid.org/0000-0003-1804-2463>),
Michaela Paul [aut],
Tea Isler [ctb],
Reinhard Furrer [ctb] (<https://orcid.org/0000-0002-6319-2332>),
Trustees of Columbia University [cph] (src/init.cpp, tools/make_cc.R,
R/stanmodels.R)
Maintainer: Craig Wang <craig.wang@math.uzh.ch>
Diff between eggCounts versions 2.3 dated 2020-01-19 and 2.3-1 dated 2021-10-05
DESCRIPTION | 16 MD5 | 131 +-- NAMESPACE | 48 - NEWS.md | 302 +++---- R/fec_models_stan.R | 192 ++-- R/fec_stan.R | 160 +-- R/fecr_models_stan.R | 688 ++++++++-------- R/fecr_probability.R | 62 - R/fecr_stan.R | 526 ++++++------ R/fecr_stanExtra.R | 234 ++--- R/fecr_stanSimple.R | 172 ++-- R/getPrior.R | 116 +- R/plotCounts.R | 28 R/printSummary.R | 20 R/profile.R | 20 R/simData.R | 172 ++-- R/stan2mcmc.R | 146 +-- R/stanmodels.R | 74 - R/waavpMethods.R | 132 +-- R/zzz.R | 22 build/partial.rdb |only build/vignette.rds |binary cleanup.win | 14 configure |only configure.win |only demo/00Index | 2 demo/fecm_stan.R | 62 - inst/CITATION | 118 +- inst/chunks/gpl.txt | 1348 ++++++++++++++++----------------- inst/doc/eggCounts_vignettes.pdf.asis | 4 man/eggCounts-package.Rd | 86 +- man/epgs.Rd | 40 man/fec_stan.Rd | 160 +-- man/fecr_probability.Rd | 86 +- man/fecr_stan.Rd | 260 +++--- man/fecr_stanExtra.Rd | 216 ++--- man/fecr_stanSimple.Rd | 160 +-- man/fecrtCI.Rd | 84 +- man/getPrior_delta.Rd | 60 - man/getPrior_mu.Rd | 64 - man/plotCounts.Rd | 80 - man/simData1s.Rd | 88 +- man/simData2s.Rd | 122 +- man/stan2mcmc.Rd | 68 - src/Makevars | 7 src/Makevars.win | 6 src/stan_files/chunks/license.stan | 34 src/stan_files/indefficacy.stan | 66 - src/stan_files/nb.stan | 46 - src/stan_files/paired.stan | 60 - src/stan_files/simple.stan | 56 - src/stan_files/unpaired.stan | 68 - src/stan_files/zinb.stan | 58 - src/stan_files/zipaired.stan | 84 +- src/stan_files/ziunpaired.stan | 94 +- tests/testthat/include |only tests/testthat/stan_files |only tests/testthat/test.R | 114 +- tools/make_cc.R | 96 +- vignettes/eggCounts_vignettes.pdf.asis | 4 60 files changed, 3605 insertions(+), 3571 deletions(-)
Title: Agglomerative Partitioning Framework for Dimension Reduction
Description: A fast and flexible framework for agglomerative
partitioning. 'partition' uses an approach called
Direct-Measure-Reduce to create new variables that maintain the
user-specified minimum level of information. Each reduced variable is
also interpretable: the original variables map to one and only one
variable in the reduced data set. 'partition' is flexible, as well:
how variables are selected to reduce, how information loss is
measured, and the way data is reduced can all be customized.
'partition' is based on the Partition framework discussed in Millstein
et al. (2020) <doi: 10.1093/bioinformatics/btz661>.
Author: Joshua Millstein [aut],
Malcolm Barrett [aut, cre] (<https://orcid.org/0000-0003-0299-5825>)
Maintainer: Malcolm Barrett <malcolmbarrett@gmail.com>
Diff between partition versions 0.1.3 dated 2021-01-07 and 0.1.4 dated 2021-10-05
DESCRIPTION | 8 MD5 | 30 NEWS.md | 5 R/reducers.R | 6 README.md | 32 build/partial.rdb |binary build/vignette.rds |binary inst/WORDLIST | 48 - inst/doc/extending-partition.html | 619 ++++++------------- inst/doc/introduction-to-partition.html | 648 +++++++------------- man/figures/README-secret_benchmarks1-1.png |binary man/figures/README-secret_benchmarks2-1.png |binary man/figures/README-stacked_area_chart-1.png |binary src/RcppExports.cpp | 5 tests/testthat/test-misc-partitioner-arguments.R | 7 tests/testthat/test-partitioners-reduce-correctly.R | 18 16 files changed, 528 insertions(+), 898 deletions(-)
Title: Pacote Experimental Designs (Portugues)
Description: Pacote para análise de delineamentos experimentais (DIC, DBC e DQL), experimentos em esquema fatorial duplo (em DIC e DBC), experimentos em parcelas subdivididas (em DIC e DBC), experimentos em esquema fatorial duplo com um tratamento adicional (em DIC e DBC), experimentos em fatorial triplo (em DIC e DBC) e experimentos em esquema fatorial triplo com um tratamento adicional (em DIC e DBC), fazendo analise de variancia e comparacao de multiplas medias (para tratamentos qualitativos), ou ajustando modelos de regressao ate a terceira potencia (para tratamentos quantitativos); analise de residuos (Ferreira, Cavalcanti and Nogueira, 2014) <doi:10.4236/am.2014.519280>.
Author: Eric Batista Ferreira, Portya Piscitelli Cavalcanti, Denismar Alves Nogueira
Maintainer: Eric Batista Ferreira <eric.ferreira@unifal-mg.edu.br>
Diff between ExpDes.pt versions 1.2.1 dated 2021-01-06 and 1.2.2 dated 2021-10-05
DESCRIPTION | 10 MD5 | 144 ++--- NAMESPACE | 2 R/anscombetukey.r | 114 ++-- R/bartlett.r | 102 +-- R/ccF.r | 310 ++++++------ R/ccboot.r | 606 +++++++++++------------ R/dbc.r | 26 - R/dic.r | 32 - R/dql.r | 26 - R/duncan.r | 348 ++++++------- R/est21Ad.r | 24 R/ex.r | 40 - R/ex1.r | 48 - R/ex2.r | 48 - R/ex3.r | 52 +- R/ex4.r | 66 +- R/ex5.r | 52 +- R/ex6.r | 40 - R/ex7.r | 58 +- R/ex8.r | 54 +- R/ex9.r | 54 +- R/exnl.r | 36 - R/faixas.r | 39 + R/fat2.ad.dbc.r | 236 ++++----- R/fat2.ad.dic.r | 312 ++++++------ R/fat2.ad2.dbc.r |only R/fat2.ad2.dic.r |only R/fat2.dbc.r | 279 +++++----- R/fat2.dic.r | 294 ++++++----- R/fat3.ad.dbc.r | 1343 ++++++++++++++++++++++++++-------------------------- R/fat3.ad.dic.r | 1289 +++++++++++++++++++++++-------------------------- R/fat3.dbc.r | 944 +++++++++++++----------------------- R/fat3.dic.r | 1278 +++++++++++++++++++++++-------------------------- R/ginv.r | 64 +- R/graficos.r | 316 ++++++------ R/han.r | 112 ++-- R/lastC.r | 50 - R/layard.r | 116 ++-- R/levene.r | 102 +-- R/lsd.r | 194 +++---- R/lsdb.r | 192 +++---- R/oneilldbc.r | 128 ++-- R/oneillmathews.r | 118 ++-- R/order.group.r | 192 +++---- R/order.stat.SNK.R | 164 +++--- R/plotres.r | 21 R/psub2.dbc.r | 47 + R/psub2.dic.r | 334 ++++++------ R/reg.nl.r | 706 +++++++++++++-------------- R/reg.poly.r | 322 ++++++------ R/respAd.r | 22 R/samiuddin.r | 124 ++-- R/scottknott.r | 312 ++++++------ R/secaAd.r | 24 R/snk.r | 354 ++++++------- R/tapply.stat.r | 126 ++-- R/tukey.r | 196 +++---- data/exnl.txt | 62 +- man/dbc.Rd | 10 man/dic.Rd | 18 man/dql.Rd | 10 man/faixas.Rd | 11 man/fat2.ad.dbc.Rd | 14 man/fat2.ad.dic.Rd | 16 man/fat2.ad2.dbc.Rd |only man/fat2.ad2.dic.Rd |only man/fat2.dbc.Rd | 15 man/fat2.dic.Rd | 15 man/fat3.ad.dbc.Rd | 19 man/fat3.ad.dic.Rd | 17 man/fat3.dbc.Rd | 14 man/fat3.dic.Rd | 16 man/psub2.dbc.Rd | 11 man/psub2.dic.Rd | 13 75 files changed, 6417 insertions(+), 6486 deletions(-)
Title: Experimental Designs Package
Description: Package for analysis of simple experimental designs (CRD, RBD and LSD), experiments in double factorial schemes (in CRD and RBD), experiments in a split plot in time schemes (in CRD and RBD), experiments in double factorial schemes with an additional treatment (in CRD and RBD), experiments in triple factorial scheme (in CRD and RBD) and experiments in triple factorial schemes with an additional treatment (in CRD and RBD), performing the analysis of variance and means comparison by fitting regression models until the third power (quantitative treatments) or by a multiple comparison test, Tukey test, test of Student-Newman-Keuls (SNK), Scott-Knott, Duncan test, t test (LSD) and Bonferroni t test (protected LSD) - for qualitative treatments; residual analysis (Ferreira, Cavalcanti and Nogueira, 2014) <doi:10.4236/am.2014.519280>.
Author: Eric Batista Ferreira, Portya Piscitelli Cavalcanti, Denismar Alves Nogueira
Maintainer: Eric Batista Ferreira <eric.ferreira@unifal-mg.edu.br>
Diff between ExpDes versions 1.2.1 dated 2021-01-06 and 1.2.2 dated 2021-10-05
DESCRIPTION | 10 MD5 | 146 ++--- NAMESPACE | 2 R/anscombetukey.R | 108 ++-- R/bartlett.R | 90 +-- R/ccF.r | 300 +++++------ R/ccboot.r | 598 +++++++++++----------- R/crd.R | 25 R/duncan.R | 180 +++--- R/est21Ad.r | 24 R/ex.r | 40 - R/ex1.r | 46 - R/ex2.r | 48 - R/ex3.r | 50 - R/ex4.r | 66 +- R/ex5.r | 52 - R/ex6.r | 40 - R/ex7.r | 58 +- R/ex8.r | 56 +- R/ex9.r | 52 - R/exnl.r | 36 - R/fat2.ad.crd.R | 319 ++++++------ R/fat2.ad.rbd.R | 43 + R/fat2.ad2.crd.r |only R/fat2.ad2.rbd.r |only R/fat2.crd.R | 50 + R/fat2.rbd.R | 49 + R/fat3.ad.crd.R | 1339 +++++++++++++++++++++++++-------------------------- R/fat3.ad.rbd.R | 1336 +++++++++++++++++++++++++------------------------- R/fat3.crd.R | 1330 +++++++++++++++++++++++++------------------------- R/fat3.rbd.R | 48 + R/ginv.R | 68 +- R/graphics.R | 308 +++++------ R/han.R | 112 ++-- R/lastC.R | 52 - R/latsd.R | 25 R/layard.R | 114 ++-- R/levene.R | 100 +-- R/lsd.R | 196 +++---- R/lsdb.R | 196 +++---- R/oneilldbc.R | 130 ++-- R/oneillmathews.R | 112 ++-- R/order.group.R | 174 +++--- R/order.stat.SNK.R | 164 +++--- R/plotres.R | 132 ++--- R/rbd.R | 35 + R/reg.nl.R | 704 +++++++++++++------------- R/reg.poly.R | 328 ++++++------ R/respAd.r | 22 R/samiuddin.R | 120 ++-- R/scottknott.R | 314 +++++------ R/secaAd.r | 24 R/snk.R | 236 ++++---- R/split2.crd.R | 43 + R/split2.rbd.R | 37 + R/strip.R | 39 - R/tapply.stat.R | 128 ++-- R/tukey.R | 208 +++---- data/exnl.txt | 62 +- man/anscombetukey.Rd | 158 +++--- man/crd.Rd | 10 man/fat2.ad.crd.Rd | 15 man/fat2.ad.rbd.Rd | 13 man/fat2.ad2.crd.Rd |only man/fat2.ad2.rbd.Rd |only man/fat2.crd.Rd | 10 man/fat2.rbd.Rd | 12 man/fat3.ad.crd.Rd | 13 man/fat3.ad.rbd.Rd | 13 man/fat3.crd.Rd | 11 man/fat3.rbd.Rd | 12 man/latsd.Rd | 10 man/rbd.Rd | 19 man/split2.crd.Rd | 10 man/split2.rbd.Rd | 10 man/strip.Rd | 10 76 files changed, 5694 insertions(+), 5356 deletions(-)