Title: Add Tooltips in 'Shiny' Apps with 'Hint.css'
Description: In 'Shiny' apps, it is sometimes useful to store information
on a particular item in a tooltip. 'Prompter' allows you to easily
create such tooltips, using 'Hint.css'.
Author: Etienne Bacher [aut, cre, cph]
Maintainer: Etienne Bacher <etienne.bacher@protonmail.com>
Diff between prompter versions 1.0.0 dated 2021-01-11 and 1.1.0 dated 2021-10-07
DESCRIPTION | 9 ++++----- MD5 | 11 ++++++----- NEWS.md |only R/add_prompt.R | 32 ++++++++++++++++++++++++++++++-- README.md | 9 ++++++++- inst/hint/hint.min.css | 8 ++++---- man/add_prompt.Rd | 8 +++++++- 7 files changed, 59 insertions(+), 18 deletions(-)
Title: Universal Storage Engine for Sparse and Dense Multidimensional
Arrays
Description: The universal storage engine 'TileDB' introduces a
powerful on-disk format for multi-dimensional arrays. It supports
dense and sparse arrays, dataframes and key-values stores, cloud
storage ('S3', 'GCS', 'Azure'), chunked arrays, multiple compression,
encryption and checksum filters, uses a fully multi-threaded
implementation, supports parallel I/O, data versioning ('time
travel'), metadata and groups. It is implemented as an embeddable
cross-platform C++ library with APIs from several languages, and
integrations.
Author: TileDB, Inc. [aut, cph],
Dirk Eddelbuettel [cre]
Maintainer: Dirk Eddelbuettel <dirk@tiledb.com>
Diff between tiledb versions 0.9.6 dated 2021-09-04 and 0.9.7 dated 2021-10-07
DESCRIPTION | 14 - MD5 | 88 ++++++----- NAMESPACE | 19 ++ NEWS.md | 37 ++++ R/ArraySchema.R | 20 ++ R/ArraySchemaEvolution.R |only R/Ctx.R | 13 + R/DataFrame.R | 4 R/Matrix.R |only R/Metadata.R | 17 -- R/Query.R | 13 + R/QueryCondition.R | 36 +++- R/RcppExports.R | 24 +++ R/SparseMatrix.R | 38 ++++ R/TileDBArray.R | 158 +++++++++++++++++++- README.md | 3 configure | 18 +- configure.ac | 11 - inst/doc/documentation.Rmd | 3 inst/doc/documentation.html | 20 +- inst/include/tiledb.h | 17 +- inst/tinytest/test_arrayschemaevolution.R |only inst/tinytest/test_arrowio.R | 4 inst/tinytest/test_dataframe.R | 17 ++ inst/tinytest/test_matrix.R |only inst/tinytest/test_query.R | 12 + inst/tinytest/test_sparsematrix.R | 20 ++ inst/tinytest/test_tiledbarray.R | 49 +++++- man/fromDataFrame.Rd | 4 man/fromMatrix.Rd |only man/generics.Rd | 12 + man/parse_query_condition.Rd | 7 man/query_statistics-set-tiledb_array-method.Rd |only man/query_statistics-tiledb_array-method.Rd |only man/tdb_collect-tiledb_array-method.Rd |only man/tdb_filter-tiledb_array-method.Rd |only man/tdb_select-tiledb_array-method.Rd |only man/tiledb_array-class.Rd | 7 man/tiledb_array.Rd | 9 + man/tiledb_array_schema_evolution-class.Rd |only man/tiledb_array_schema_evolution.Rd |only man/tiledb_array_schema_evolution_add_attribute.Rd |only man/tiledb_array_schema_evolution_array_evolve.Rd |only man/tiledb_array_schema_evolution_drop_attribute.Rd |only man/tiledb_ctx_stats.Rd |only man/tiledb_put_metadata.Rd | 2 man/tiledb_query_stats.Rd |only man/tiledb_schema_get_dim_attr_status.Rd |only src/Makevars.win | 2 src/RcppExports.cpp | 75 +++++++++ src/finalizers.h | 9 + src/libtiledb.cpp | 137 ++++++++++++++++- tools/tiledbVersion.txt | 4 vignettes/documentation.Rmd | 3 54 files changed, 783 insertions(+), 143 deletions(-)
Title: Miscellaneous 3D Plots
Description: A collection of miscellaneous 3d plots, including
isosurfaces.
Author: Dai Feng and Luke Tierney
Maintainer: Luke Tierney <luke-tierney@uiowa.edu>
Diff between misc3d versions 0.9-0 dated 2020-09-06 and 0.9-1 dated 2021-10-07
DESCRIPTION | 7 ++++--- MD5 | 6 +++--- demo/teapot.R | 2 +- inst/CITATION | 4 ++-- 4 files changed, 10 insertions(+), 9 deletions(-)
Title: Higher Level 'API' for 'torch'
Description: A high level interface for 'torch' providing utilities to reduce the
the amount of code needed for common tasks, abstract away torch details and
make the same code work on both the 'CPU' and 'GPU'. It's flexible enough to
support expressing a large range of models. It's heavily inspired by 'fastai' by
Howard et al. (2020) <arXiv:2002.04688>, 'Keras' by Chollet et al. (2015) and
'Pytorch Lightning' by Falcon et al. (2019) <doi:10.5281/zenodo.3828935>.
Author: Daniel Falbel [aut, cre, cph],
RStudio [cph]
Maintainer: Daniel Falbel <daniel@rstudio.com>
Diff between luz versions 0.1.0 dated 2021-06-17 and 0.2.0 dated 2021-10-07
DESCRIPTION | 17 MD5 | 88 +-- NAMESPACE | 25 NEWS.md |only R/accelerator.R | 15 R/as_dataloader.R |only R/callbacks-monitor-metrics.R |only R/callbacks-profile.R | 4 R/callbacks.R | 214 ------- R/context.R | 433 +++++++++++++++- R/lr-finder.R |only R/metrics.R | 1 R/module-plot.R | 2 R/module-print.R | 45 + R/module.R | 414 +++++++++------ R/serialization.R | 18 R/utils.R | 1 README.md | 10 inst/doc/get-started.R | 53 + inst/doc/get-started.Rmd | 5 inst/doc/get-started.html | 64 +- man/accelerator.Rd | 9 man/as_dataloader.Rd |only man/context.Rd | 130 ++++ man/ctx.Rd | 6 man/evaluate.Rd |only man/fit.luz_module_generator.Rd | 76 +- man/get_metrics.Rd |only man/lr_finder.Rd |only man/luz_callback.Rd | 10 man/luz_callback_early_stopping.Rd | 4 man/luz_callback_model_checkpoint.Rd | 2 man/predict.luz_module_fitted.Rd |only man/rmd/callbacks.Rmd | 3 man/rmd/ctx.Rmd | 8 man/rmd/evaluate.Rmd |only man/rmd/evaluate.html |only man/setup.Rd | 6 tests/testthat/_snaps/callbacks-monitor-metrics.md |only tests/testthat/_snaps/callbacks.md | 91 --- tests/testthat/_snaps/module-plot/ggplot2-histogram.svg | 2 tests/testthat/_snaps/module.md | 12 tests/testthat/helper-expectations.R | 7 tests/testthat/test-as_dataloader.R |only tests/testthat/test-callbacks-monitor-metrics.R |only tests/testthat/test-callbacks-profile.R | 16 tests/testthat/test-callbacks.R | 140 ----- tests/testthat/test-lr-finder.R |only tests/testthat/test-module.R | 142 +++++ tests/testthat/test-utils.R | 2 vignettes/examples/index.Rmd | 4 vignettes/examples/pets-unet.Rmd |only vignettes/get-started.Rmd | 5 53 files changed, 1357 insertions(+), 727 deletions(-)
Title: Confusion Matrix Toolset
Description: Takes the outputs of a 'caret' confusion matrix and allows for the quick conversion of these list items to lists.
The intended usage is to allow the tool to work with the outputs of machine learning classification models.
This tool works with classification problems for binary and multi-classification problems and allows for the record level conversion of the confusion matrix outputs.
This is useful, as it allows quick conversion of these objects for storage in database systems and to track ML model performance over time.
Traditionally, this approach has been used for highlighting model representation and feature slippage.
Author: Gary Hutson [aut, cre] (<https://orcid.org/0000-0003-3534-6143>)
Maintainer: Gary Hutson <hutsons-hacks@outlook.com>
Diff between ConfusionTableR versions 1.0.1 dated 2021-07-21 and 1.0.2 dated 2021-10-07
DESCRIPTION | 10 ++--- MD5 | 12 +++--- NAMESPACE | 11 ++++++ NEWS.md | 5 ++ R/dummycoder.R |only R/globals.R | 2 - inst/doc/ConfusionTableR.html | 76 +++++++++++++++++++++--------------------- man/dummy_encoder.Rd |only 8 files changed, 67 insertions(+), 49 deletions(-)
More information about ConfusionTableR at CRAN
Permanent link
Title: Optimal Pricing of Assets with Fixed Expiry Date
Description: Calculates the optimal price of assets (such as
airline flight seats, hotel room bookings) whose value
becomes zero after a fixed ``expiry date''. Assumes
potential customers arrive (possibly in groups) according
to a known inhomogeneous Poisson process. Also assumes a
known time-varying elasticity of demand (price sensitivity)
function. Uses elementary techniques based on ordinary
differential equations. Uses the package deSolve to effect
the solution of these differential equations.
Author: Rolf Turner <r.turner@auckland.ac.nz>
Maintainer: Rolf Turner <r.turner@auckland.ac.nz>
Diff between AssetPricing versions 1.0-1 dated 2018-03-31 and 1.0-3 dated 2021-10-07
Changelog | 9 +++++++++ DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- inst/CITATION | 4 ++-- man/buildS.Rd | 6 +++--- man/plot.AssetPricing.Rd | 6 +++--- man/vsolve.Rd | 9 ++++----- man/xsolve.Rd | 6 +++--- 8 files changed, 35 insertions(+), 27 deletions(-)
Title: Core Utilities for Single-Cell RNA-Seq
Description: Core utilities for single-cell RNA-seq data analysis. Contained within are utility functions for working with differential expression (DE) matrices and count matrices, a collection of functions for manipulating and plotting data via 'ggplot2', and functions to work with cell graphs and cell embeddings. Graph-based methods include embedding kNN cell graphs into a UMAP <doi:10.21105/joss.00861>, collapsing vertices of each cluster in the graph, and propagating graph labels.
Author: Viktor Petukhov [aut],
Ramus Rydbirk [aut],
Peter Kharchenko [aut],
Evan Biederstedt [aut, cre]
Maintainer: Evan Biederstedt <evan.biederstedt@gmail.com>
Diff between sccore versions 0.1.3 dated 2021-05-05 and 1.0.0 dated 2021-10-07
DESCRIPTION | 6 +- MD5 | 18 +++--- R/RcppExports.R | 2 R/graphs.R | 20 ++++--- R/helpers.R | 6 -- R/plots.R | 6 +- README.md | 6 +- src/Makevars | 4 - src/Makevars.win | 4 - src/graph_embedding.cpp | 132 +++++++++++------------------------------------- 10 files changed, 69 insertions(+), 135 deletions(-)
Title: Density Goodness-of-Fit Test
Description: Provides functions for the implementation of a density goodness-of-fit test, based on piecewise approximation of the L2 distance.
Author: Dimitrios Bagkavos [aut, cre]
Maintainer: Dimitrios Bagkavos <dimitrios.bagkavos@gmail.com>
Diff between L2DensityGoFtest versions 0.1.0 dated 2020-03-25 and 0.2.0 dated 2021-10-07
L2DensityGoFtest-0.1.0/L2DensityGoFtest/R/hopt.cutoff.R |only L2DensityGoFtest-0.1.0/L2DensityGoFtest/man/hopt.cutoff.Rd |only L2DensityGoFtest-0.2.0/L2DensityGoFtest/DESCRIPTION | 7 - L2DensityGoFtest-0.2.0/L2DensityGoFtest/MD5 | 20 ++- L2DensityGoFtest-0.2.0/L2DensityGoFtest/NAMESPACE | 2 L2DensityGoFtest-0.2.0/L2DensityGoFtest/R/cutoff.asymptotic.R |only L2DensityGoFtest-0.2.0/L2DensityGoFtest/R/cutoff.edgeworth.R |only L2DensityGoFtest-0.2.0/L2DensityGoFtest/R/hopt.be.R |only L2DensityGoFtest-0.2.0/L2DensityGoFtest/R/hopt.edgeworth.R |only L2DensityGoFtest-0.2.0/L2DensityGoFtest/man/Kernels.Rd | 5 L2DensityGoFtest-0.2.0/L2DensityGoFtest/man/NDistDens.Rd | 2 L2DensityGoFtest-0.2.0/L2DensityGoFtest/man/S.n.Rd | 54 +++++----- L2DensityGoFtest-0.2.0/L2DensityGoFtest/man/cutoff.asymptotic.Rd |only L2DensityGoFtest-0.2.0/L2DensityGoFtest/man/cutoff.edgeworth.Rd |only L2DensityGoFtest-0.2.0/L2DensityGoFtest/man/hopt.be.Rd |only L2DensityGoFtest-0.2.0/L2DensityGoFtest/man/hopt.edgeworth.Rd |only 16 files changed, 49 insertions(+), 41 deletions(-)
More information about L2DensityGoFtest at CRAN
Permanent link
Title: Weighted BACON Algorithms
Description: The BACON algorithms are methods for multivariate outlier
nomination (detection) and robust linear regression by Billor, Hadi,
and Velleman (2000) <doi:10.1016/S0167-9473(99)00101-2>. The extension
to weighted problems is due to Beguin and Hulliger (2008)
<https://www150.statcan.gc.ca/n1/en/catalogue/12-001-X200800110616>; see
also <doi:10.21105/joss.03238>.
Author: Tobias Schoch [aut, cre] (<https://orcid.org/0000-0002-1640-3395>),
R-core [cph] (plot.wbaconlm derives from plot.lm)
Maintainer: Tobias Schoch <tobias.schoch@gmail.com>
Diff between wbacon versions 0.5-1 dated 2021-06-17 and 0.5-2 dated 2021-10-07
DESCRIPTION | 9 MD5 | 64 ++-- NAMESPACE | 92 +++--- R/median_w.R | 8 R/plot_wbaconlm.R | 388 +++++++++++++------------- R/plot_wbaconmv.R | 208 ++++++------- R/predict_wbaconlm.R | 34 +- R/quantile_w.R | 102 +++--- R/wbacon.R | 286 +++++++++---------- R/wbacon_reg.R | 254 ++++++++--------- inst/CITATION | 18 - inst/NEWS.Rd | 57 ++- inst/doc/doc_c_functions.pdf |binary inst/doc/methods.pdf |binary inst/doc/wbacon.Rmd | 640 +++++++++++++++++++++---------------------- man/is_outlier.Rd | 62 ++-- man/median_w.Rd | 54 +-- man/plot_wbaconlm.Rd | 170 +++++------ man/plot_wbaconmv.Rd | 146 ++++----- man/predict_wbaconlm.Rd | 114 +++---- man/quantile_w.Rd | 86 ++--- man/wbacon-package.Rd | 56 +-- man/wbacon.Rd | 284 +++++++++---------- man/wbacon_reg.Rd | 312 ++++++++++---------- src/fitwls.c | 6 src/fitwls.h | 12 src/wbacon.c | 10 src/wbacon.h | 12 src/wbacon_reg.c | 12 src/wbacon_reg.h | 12 tests/test_wbacon.R | 206 ++++++------- tests/test_wbacon_reg.R | 122 ++++---- vignettes/wbacon.Rmd | 640 +++++++++++++++++++++---------------------- 33 files changed, 2257 insertions(+), 2219 deletions(-)
Title: Visualizing Generalized Canonical Discriminant and Canonical
Correlation Analysis
Description: Functions for computing and visualizing
generalized canonical discriminant analyses and canonical correlation analysis
for a multivariate linear model.
Traditional canonical discriminant analysis is restricted to a one-way 'MANOVA'
design and is equivalent to canonical correlation analysis between a set of quantitative
response variables and a set of dummy variables coded from the factor variable.
The 'candisc' package generalizes this to higher-way 'MANOVA' designs
for all factors in a multivariate linear model,
computing canonical scores and vectors for each term. The graphic functions provide low-rank (1D, 2D, 3D)
visualizations of terms in an 'mlm' via the 'plot.candisc' and 'heplot.candisc' methods. Related plots are
now provided for canonical correlation analysis when all predictors are quantitative.
Author: Michael Friendly [aut, cre],
John Fox [aut]
Maintainer: Michael Friendly <friendly@yorku.ca>
Diff between candisc versions 0.8-5 dated 2021-01-22 and 0.8-6 dated 2021-10-07
DESCRIPTION | 9 +++++---- MD5 | 30 ++++++++++++++++-------------- NEWS | 4 ++++ build/partial.rdb |binary data/Grass.rda |binary data/HSB.rda |binary data/Wine.RData |binary data/Wolves.rda |binary inst/CITATION |only inst/WORDLIST |only inst/doc/diabetes.Rmd | 2 +- inst/doc/diabetes.html | 27 ++++++++++++++++----------- man/candisc-package.Rd | 9 +++++---- man/candisc.Rd | 4 ++-- man/heplot.candisc.Rd | 4 +++- man/heplot.candiscList.Rd | 5 ++++- vignettes/diabetes.Rmd | 2 +- 17 files changed, 57 insertions(+), 39 deletions(-)
Title: Ready to Use Extra Datasets for Torch
Description: Provides datasets in a format that can be easily consumed by torch 'dataloaders'.
Handles data downloading from multiple sources, caching and pre-processing so
users can focus only on their model implementations.
Author: Daniel Falbel [aut, cre],
RStudio [cph]
Maintainer: Daniel Falbel <daniel@rstudio.com>
Diff between torchdatasets versions 0.0.1 dated 2021-01-19 and 0.1.0 dated 2021-10-07
DESCRIPTION | 11 +++---- MD5 | 35 ++++++++++++++++------ NAMESPACE | 4 ++ NEWS.md |only R/bank-marketing.R |only R/bird-species.R | 26 ++-------------- R/cityscapes-pix2pix.R |only R/guess-the-correlation.R | 43 ++++++++++++++-------------- R/imdb.R |only R/oxford-pet-dataset.R |only R/utils.R |only README.md | 9 +++++ man/bank_marketing_dataset.Rd |only man/bird_species_dataset.Rd | 4 +- man/cityscapes_pix2pix_dataset.Rd |only man/dogs_vs_cats_dataset.Rd | 2 - man/guess_the_correlation_dataset.Rd | 5 ++- man/imdb_dataset.Rd |only man/oxford_pet_dataset.Rd |only tests/testthat/helper-torchdatasets.R |only tests/testthat/test-bank-marketing.R |only tests/testthat/test-cityscapes-pix2pix.R |only tests/testthat/test-dogs-vs-cats.R | 7 +++- tests/testthat/test-guess-the-correlation.R | 5 +-- tests/testthat/test-imdb.R |only tests/testthat/test-oxford-pet-dataset.R |only 26 files changed, 84 insertions(+), 67 deletions(-)
Title: Tidy RSS for R
Description: With the objective of including data from RSS feeds into your analysis,
'tidyRSS' parses RSS, Atom and JSON feeds and returns a tidy data frame.
Author: Robert Myles McDonnell [aut, cre],
Jonathan Carroll [ctb],
Mike Smith [ctb],
Joseph Stachelek [ctb]
Maintainer: Robert Myles McDonnell <robertmylesmcdonnell@gmail.com>
Diff between tidyRSS versions 2.0.3 dated 2020-09-13 and 2.0.4 dated 2021-10-07
DESCRIPTION | 7 +++---- MD5 | 6 +++--- NEWS.md | 6 ++++++ R/utils.R | 2 +- 4 files changed, 13 insertions(+), 8 deletions(-)
Title: Power and Sample Size for Health Researchers via Shiny
Description: Power and Sample Size for Health Researchers is a Shiny application that brings together a
series of functions related to sample size and power calculations for common analysis in the healthcare
field. There are functionalities to calculate the power, sample size to estimate or test hypotheses for means and
proportions (including test for correlated groups, equivalence, non-inferiority and superiority), association, correlations coefficients,
regression coefficients (linear, logistic and Cox), linear mixed model,
Cronbach's alpha, interobserver agreement, intraclass correlation coefficients,
limit of agreement on Bland-Altman plots,
area under the curve, sensitivity and specificity incorporating the prevalence of disease.
You can also use the online version at <https://hcpa-unidade-bioestatistica.shinyapps.io/PSS_Health/>.
Author: Rogério Boff Borges [aut, cre]
(<https://orcid.org/0000-0002-2548-1889>),
Guilherme Serpa Azambuja [aut]
(<https://orcid.org/0000-0001-6246-4538>),
Aline Castello Branco Mancuso [aut]
(<https://orcid.org/0000-0001-6033-8335>),
Vanessa Bielefeldt Leotti [aut]
(<https://orcid.org/0000-0003-3860-9367>),
Vânia Naomi Hirakata [aut] (<https://orcid.org/0000-0003-4645-2080>),
Suzi Alves Camey [aut] (<https://orcid.org/0000-0002-5564-081X>),
Stela Maris de Jezus Castro [aut]
(<https://orcid.org/0000-0001-5862-6709>),
Hospital de Clínicas de Porto Alegre [fnd]
Maintainer: Rogério Boff Borges <roborges@hcpa.edu.br>
Diff between PSS.Health versions 0.2.1 dated 2021-06-17 and 0.3.1 dated 2021-10-07
DESCRIPTION | 8 MD5 | 14 inst/PSS.Health/R |only inst/PSS.Health/global.R | 54 inst/PSS.Health/server.R | 2138 +++--------------- inst/PSS.Health/ui.R | 1351 +++++------ inst/PSS.Health/www/Delta_two_groups_independents.Rmd | 8 inst/PSS.Health/www/PSS.png |only inst/PSS.Health/www/Teste_Mcnemar.Rmd | 2 9 files changed, 1189 insertions(+), 2386 deletions(-)
Title: Simulating from the Polya Posterior
Description: Simulate via Markov chain Monte Carlo (hit-and-run algorithm)
a Dirichlet distribution conditioned to satisfy a finite set of linear
equality and inequality constraints (hence to lie in a convex polytope
that is a subset of the unit simplex).
Author: Glen Meeden <glen@stat.umn.edu> and Radu Lazar
<lazar@stat.umn.edu> and Charles J. Geyer <charlie@stat.umn.edu>
Maintainer: Glen Meeden <glen@stat.umn.edu>
Diff between polyapost versions 1.6 dated 2020-05-01 and 1.7 dated 2021-10-07
DESCRIPTION | 10 +++++----- MD5 | 10 +++++----- build/partial.rdb |binary build/vignette.rds |binary inst/doc/pp1.pdf |binary src/hitrun.c | 14 ++++++++++---- 6 files changed, 20 insertions(+), 14 deletions(-)
Title: Import and Analyse Ego-Centered Network Data
Description: Tools for importing, analyzing and visualizing ego-centered
network data. Supports several data formats, including the export formats of
'EgoNet', 'EgoWeb 2.0' and 'openeddi'. An interactive (shiny) app for the
intuitive visualization of ego-centered networks is provided. Also included
are procedures for creating and visualizing Clustered Graphs
(Lerner 2008 <DOI:10.1109/PACIFICVIS.2008.4475458>).
Author: Till Krenz [aut, cre],
Pavel N. Krivitsky [aut],
Raffaele Vacca [aut],
Michal Bojanowski [aut] (<https://orcid.org/0000-0001-7503-852X>),
Markus Gamper [ctb],
Andreas Herz [aut],
Christopher McCarty [ctb]
Maintainer: Till Krenz <egor@tillt.net>
Diff between egor versions 1.21.7 dated 2021-07-01 and 1.21.10 dated 2021-10-07
DESCRIPTION | 8 ++-- MD5 | 19 +++++----- R/clustered.graphs.R | 13 +++++-- R/egor.R | 7 +++ R/plot_ego_gram.R | 2 - inst/doc/egor_allbus.html | 6 +-- inst/doc/qualtrics.html | 6 +-- inst/doc/using_egor.html | 60 ++++++++++++++++----------------- tests/testthat/test-activate.R |only tests/testthat/test-clustered_graphs.R | 54 +++++++++++++++++++++++++++++ tests/testthat/test-subset.R | 29 +++++++++++++++ 11 files changed, 149 insertions(+), 55 deletions(-)
Title: Make Dealing with Dates a Little Easier
Description: Functions to work with date-times and time-spans:
fast and user friendly parsing of date-time data, extraction and
updating of components of a date-time (years, months, days, hours,
minutes, and seconds), algebraic manipulation on date-time and
time-span objects. The 'lubridate' package has a consistent and
memorable syntax that makes working with dates easy and fun. Parts of
the 'CCTZ' source code, released under the Apache 2.0 License, are
included in this package. See <https://github.com/google/cctz> for
more details.
Author: Vitalie Spinu [aut, cre],
Garrett Grolemund [aut],
Hadley Wickham [aut],
Davis Vaughan [ctb],
Ian Lyttle [ctb],
Imanuel Costigan [ctb],
Jason Law [ctb],
Doug Mitarotonda [ctb],
Joseph Larmarange [ctb],
Jonathan Boiser [ctb],
Chel Hee Lee [ctb],
Google Inc. [ctb, cph]
Maintainer: Vitalie Spinu <spinuvit@gmail.com>
Diff between lubridate versions 1.7.10 dated 2021-02-26 and 1.8.0 dated 2021-10-07
lubridate-1.7.10/lubridate/R/RcppExports.R |only lubridate-1.7.10/lubridate/src/RcppExports.cpp |only lubridate-1.8.0/lubridate/DESCRIPTION | 45 ++-- lubridate-1.8.0/lubridate/MD5 | 80 +++---- lubridate-1.8.0/lubridate/NAMESPACE | 1 lubridate-1.8.0/lubridate/NEWS.md | 19 + lubridate-1.8.0/lubridate/R/Dates.r | 19 + lubridate-1.8.0/lubridate/R/POSIXt.r | 13 + lubridate-1.8.0/lubridate/R/accessors-quarter.r | 57 +++-- lubridate-1.8.0/lubridate/R/coercion.r | 29 +- lubridate-1.8.0/lubridate/R/cpp11-wrappers.R |only lubridate-1.8.0/lubridate/R/cpp11.R |only lubridate-1.8.0/lubridate/R/durations.r | 10 lubridate-1.8.0/lubridate/R/guess.r | 2 lubridate-1.8.0/lubridate/R/instants.r | 18 + lubridate-1.8.0/lubridate/R/intervals.r | 13 - lubridate-1.8.0/lubridate/R/ops-subtraction.r | 10 lubridate-1.8.0/lubridate/R/package.r | 9 lubridate-1.8.0/lubridate/R/parse.r | 6 lubridate-1.8.0/lubridate/R/periods.r | 45 ++-- lubridate-1.8.0/lubridate/R/round.r | 19 - lubridate-1.8.0/lubridate/R/stamp.r | 9 lubridate-1.8.0/lubridate/R/time-zones.r | 10 lubridate-1.8.0/lubridate/R/tzdir.R |only lubridate-1.8.0/lubridate/R/update.r | 2 lubridate-1.8.0/lubridate/R/zzz.R | 40 --- lubridate-1.8.0/lubridate/inst/doc/lubridate.html | 1 lubridate-1.8.0/lubridate/man/as_date.Rd | 3 lubridate-1.8.0/lubridate/man/duration.Rd | 6 lubridate-1.8.0/lubridate/man/hidden_aliases.Rd | 2 lubridate-1.8.0/lubridate/man/lubridate-package.Rd | 1 lubridate-1.8.0/lubridate/man/quarter.Rd | 27 +- lubridate-1.8.0/lubridate/man/round_date.Rd | 2 lubridate-1.8.0/lubridate/man/stamp.Rd | 4 lubridate-1.8.0/lubridate/man/within-interval.Rd | 13 - lubridate-1.8.0/lubridate/src/Makevars | 2 lubridate-1.8.0/lubridate/src/Makevars.win | 2 lubridate-1.8.0/lubridate/src/cpp11.cpp |only lubridate-1.8.0/lubridate/src/update.cpp | 157 +++++++------- lubridate-1.8.0/lubridate/tests/testthat/test-Dates.R | 21 + lubridate-1.8.0/lubridate/tests/testthat/test-POSIXt.R | 32 ++ lubridate-1.8.0/lubridate/tests/testthat/test-accessors.R | 109 ++++++++- lubridate-1.8.0/lubridate/tests/testthat/test-durations.R | 10 lubridate-1.8.0/lubridate/tests/testthat/test-guess.R | 26 ++ 44 files changed, 574 insertions(+), 300 deletions(-)
Title: Structural Exploration of the Gene Ontology (GO) Knowledge Base
Description: It provides an effective, efficient, and fast way to explore the Gene Ontology (GO).
Given a set of genes, the package contains functions to assess the GO and obtain the
terms associated with the genes and the levels of the GO terms. The package provides
functions for the three different GO ontology. We discussed the methods explicitly in
the following article <doi:10.1038/s41598-020-73326-3>.
Author: Kalifa Manjang, Frank Emmert-Streib, Shailesh Tripathi, Olli Yli-Harja, Matthias Dehmer
Maintainer: Kalifa Manjang <kalifamanjang1@gmail.com>
Diff between GOxploreR versions 1.2.2 dated 2021-07-08 and 1.2.3 dated 2021-10-07
DESCRIPTION | 8 - MD5 | 12 +- R/allgotree.R | 234 +++++++++++++++++++++++++++++++++++++++++-------- R/rankingFun.R | 9 - build/vignette.rds |binary inst/doc/GOxploreR.pdf |binary man/GetLeafNodesMF.Rd | 2 7 files changed, 214 insertions(+), 51 deletions(-)
Title: Geostatistical Modelling of Spatially Referenced Prevalence Data
Description: Provides functions for both likelihood-based
and Bayesian analysis of spatially referenced prevalence data. For a tutorial on the use of the R package, see Giorgi and Diggle (2017) <doi:10.18637/jss.v078.i08>.
Author: Emanuele Giorgi, Peter J. Diggle
Maintainer: Emanuele Giorgi <e.giorgi@lancaster.ac.uk>
Diff between PrevMap versions 1.5.3 dated 2020-02-06 and 1.5.4 dated 2021-10-07
PrevMap-1.5.3/PrevMap/build |only PrevMap-1.5.3/PrevMap/inst/doc |only PrevMap-1.5.3/PrevMap/vignettes |only PrevMap-1.5.4/PrevMap/DESCRIPTION | 11 - PrevMap-1.5.4/PrevMap/MD5 | 41 +----- PrevMap-1.5.4/PrevMap/R/foo.R | 118 ------------------- PrevMap-1.5.4/PrevMap/man/Laplace.sampling.Rd | 14 -- PrevMap-1.5.4/PrevMap/man/adjust.sigma2.Rd | 15 -- PrevMap-1.5.4/PrevMap/man/binomial.logistic.Bayes.Rd | 34 ----- PrevMap-1.5.4/PrevMap/man/continuous.sample.Rd | 13 -- PrevMap-1.5.4/PrevMap/man/data_sim.Rd | 4 PrevMap-1.5.4/PrevMap/man/galicia.Rd | 4 PrevMap-1.5.4/PrevMap/man/galicia.boundary.Rd | 4 PrevMap-1.5.4/PrevMap/man/linear.model.Bayes.Rd | 20 --- PrevMap-1.5.4/PrevMap/man/linear.model.MLE.Rd | 26 ---- PrevMap-1.5.4/PrevMap/man/loaloa.Rd | 4 16 files changed, 31 insertions(+), 277 deletions(-)
Title: Generate Raster Data Lazily from 'GDAL'
Description: Read raster data at a specified resolution on-demand via 'GDAL'
(the Geospatial Data Abstraction Library <https://gdal.org/>). Augments the
'raster' package by never reading data from a raster source until necessary for
generating an in-memory 'raster' object. A 'lazyraster' object may be cropped
and converted to 'raster' object, and by default will only read a small amount
of data sufficient for an overall summary. The amount of data read can be
controlled by specifying the output dimensions.
Author: Michael Sumner [aut, cre]
Maintainer: Michael Sumner <mdsumner@gmail.com>
Diff between lazyraster versions 0.5.0 dated 2019-10-09 and 0.5.1 dated 2021-10-07
DESCRIPTION | 9 +++----- MD5 | 24 ++++++++++----------- NEWS.md | 6 +++++ R/lazyraster.R | 5 ++++ README.md | 34 +++++++++++++++++++------------ man/as_raster.Rd | 3 -- man/figures/README-mars-1.png |binary man/figures/README-mars-2.png |binary man/figures/README-tms-1.png |binary man/figures/README-tms-2.png |binary man/figures/README-unnamed-chunk-1-1.png |binary man/lazyraster-raster-S4.Rd | 1 man/quadmesh.Rd | 3 -- 13 files changed, 50 insertions(+), 35 deletions(-)
Title: Generalized Graded Unfolding Model
Description: An implementation of the generalized graded unfolding model (GGUM) in R, see Roberts, Donoghue, and Laughlin (2000) <doi:10.1177/01466216000241001>). It allows to simulate data sets based on the GGUM. It fits the GGUM and the GUM, and it retrieves item and person parameter estimates. Several plotting functions are available (item and test information functions; item and test characteristic curves; item category response curves). Additionally, there are some functions that facilitate the communication between R and 'GGUM2004'. Finally, a model-fit checking utility, MODFIT(), is also available.
Author: Jorge N. Tendeiro [aut, cre],
Sebastian Castro-Alvarez [aut]
Maintainer: Jorge N. Tendeiro <tendeiro@hiroshima-u.ac.jp>
Diff between GGUM versions 0.4-2 dated 2021-02-21 and 0.4-3 dated 2021-10-07
DESCRIPTION | 9 ++++----- MD5 | 14 +++++++------- R/GGUM.R | 10 +++++++++- R/GUM_internal.R | 10 ++++++++-- R/Model4.R | 11 +++++++++-- R/pkgname.R | 5 ++++- build/partial.rdb |binary man/GGUM-package.Rd | 5 ++++- 8 files changed, 45 insertions(+), 19 deletions(-)
Title: Functions for Tabular Reporting
Description: Create pretty tables for 'HTML', 'PDF', 'Microsoft Word' and 'Microsoft PowerPoint'
documents from 'R Markdown'. Functions are provided to let users create tables, modify and format
their content. It also extends package 'officer' that does not contain any feature for customized
tabular reporting.
Author: David Gohel [aut, cre],
Clementine Jager [ctb],
Quentin Fazilleau [ctb],
Maxim Nazarov [ctb] (rmarkdown for docx output),
Titouan Robert [ctb],
Michael Barrowman [ctb] (inline footnotes),
Atsushi Yasumoto [ctb] (support for bookdown cross reference),
Paul Julian [ctb] (support for gam objects)
Maintainer: David Gohel <david.gohel@ardata.fr>
Diff between flextable versions 0.6.8 dated 2021-09-06 and 0.6.9 dated 2021-10-07
DESCRIPTION | 10 +- MD5 | 71 ++++++++++----------- NAMESPACE | 4 + NEWS.md | 19 +++++ R/borders.R | 136 +++++++++++++++++++++++++++++++++++++++- R/defaults.R | 11 ++- R/docx_str.R | 10 ++ R/format_fun.R | 109 +++++++++++++++++++++++++------- R/formatters.R | 39 +++++++---- R/html_str.R | 4 - R/latex_chunks.R | 1 R/latex_str.R | 137 ++++++++++++++++++++++++----------------- R/printers.R | 17 +++-- man/border.Rd | 41 ++++++------ man/border_inner.Rd | 2 man/border_inner_h.Rd | 2 man/border_inner_v.Rd | 2 man/border_outer.Rd | 2 man/border_remove.Rd | 2 man/colformat_char.Rd | 3 man/colformat_date.Rd | 5 + man/colformat_datetime.Rd | 5 + man/colformat_double.Rd | 5 + man/colformat_image.Rd | 5 + man/colformat_int.Rd | 5 + man/colformat_lgl.Rd | 5 + man/colformat_num.Rd | 5 + man/hline.Rd | 2 man/hline_bottom.Rd | 2 man/hline_top.Rd | 2 man/print.flextable.Rd | 4 - man/set_flextable_defaults.Rd | 3 man/surround.Rd |only man/vline.Rd | 2 man/vline_left.Rd | 2 man/vline_right.Rd | 2 tests/testthat/test-captions.R | 4 - 37 files changed, 486 insertions(+), 194 deletions(-)
Title: Statistical Inference of Vine Copulas
Description: Provides tools for the statistical analysis of regular vine copula
models, see Aas et al. (2009) <doi:10.1016/j.insmatheco.2007.02.001> and
Dissman et al. (2013) <doi:10.1016/j.csda.2012.08.010>.
The package includes tools for parameter estimation, model selection,
simulation, goodness-of-fit tests, and visualization. Tools for estimation,
selection and exploratory data analysis of bivariate copula models are also
provided.
Author: Thomas Nagler [aut, cre],
Ulf Schepsmeier [aut],
Jakob Stoeber [aut],
Eike Christian Brechmann [aut],
Benedikt Graeler [aut],
Tobias Erhardt [aut],
Carlos Almeida [ctb],
Aleksey Min [ctb, ths],
Claudia Czado [ctb, ths],
Mathias Hofmann [ctb],
Matthias Killiches [ctb],
Harry Joe [ctb],
Thibault Vatter [ctb]
Maintainer: Thomas Nagler <mail@tnagler.com>
Diff between VineCopula versions 2.4.2 dated 2021-05-12 and 2.4.3 dated 2021-10-07
DESCRIPTION | 10 +++--- MD5 | 58 +++++++++++++++++----------------- NEWS.md | 9 +++++ R/BiCopPar2Tau.R | 68 +++++++++-------------------------------- R/BiCopTau2Par.R | 2 - R/RVineCopSelect.R | 3 - R/RVineSeqEst.R | 3 - R/RVineStructureSelect.R | 3 - R/VineCopula-package.R | 2 - README.md | 5 +-- build/partial.rdb |binary inst/include/VineCopula/vine.h | 4 +- man/RVineCopSelect.Rd | 3 - man/RVineSeqEst.Rd | 3 - man/RVineStructureSelect.Rd | 3 - man/VineCopula-package.Rd | 2 - src/cdvine.c | 4 +- src/condsim.c | 4 +- src/deriv.c | 4 +- src/deriv2.c | 4 +- src/evCopula.c | 4 +- src/hfunc.c | 4 +- src/hfuncderiv.c | 4 +- src/hfuncderiv2.c | 4 +- src/likelihood.c | 4 +- src/logderiv.c | 4 +- src/pit.c | 4 +- src/rvinederiv2.c | 4 +- src/tcopuladeriv.c | 4 +- src/tcopuladeriv_new.c | 4 +- 30 files changed, 101 insertions(+), 133 deletions(-)
Title: Lightweight Access to the 'Geospatial Data Abstraction Library'
('GDAL')
Description: Provides low-level access to 'GDAL' functionality for R packages.
'GDAL' is the 'Geospatial Data Abstraction Library' a translator for raster and vector geospatial data formats
that presents a single raster abstract data model and single vector abstract data model to the calling application
for all supported formats <https://gdal.org/>.
Author: Michael Sumner [aut, cre] (<https://orcid.org/0000-0002-2471-7511>),
Simon Wotherspoon [ctb] (figured out the mechanism for the resampling
algorithm),
Mark Padgham [ctb] (helped get started :)),
Edzer Pebesma [ctb] (wrote allocate_attribute, copied here from sf),
Roger Bivand [ctb] (wrote configure.ac, adapted here from rgdal),
Jim Hester [ctb] (wrote CollectorList.h, copied here from fs package),
Timothy Keitt [ctb] (wrote GetPointsInternal copied here from rgdal2
package),
Jeroen Ooms [ctb] (tweaked build process, provided Windows build tools),
Dale Maschette [ctb] (created the hex logo),
Joseph Stachelek [ctb],
Even Rouault [ctb] (primary author of the COG format and its use of the
GDALwarp app-library, example code used by the warper function
here),
Robert Hijmans [ctb] (wrote some source in the warper, terra package
used as example/inspiration)
Maintainer: Michael Sumner <mdsumner@gmail.com>
Diff between vapour versions 0.8.0 dated 2021-08-25 and 0.8.5 dated 2021-10-07
vapour-0.8.0/vapour/src/00headers_dirigible.cpp |only vapour-0.8.0/vapour/src/00headers_read_fids.cpp |only vapour-0.8.5/vapour/DESCRIPTION | 8 vapour-0.8.5/vapour/MD5 | 61 - vapour-0.8.5/vapour/NAMESPACE | 11 vapour-0.8.5/vapour/NEWS.md | 39 vapour-0.8.5/vapour/R/00_read_block.R |only vapour-0.8.5/vapour/R/RcppExports.R | 144 +- vapour-0.8.5/vapour/R/raster-info.R | 5 vapour-0.8.5/vapour/R/raster-input.R | 447 +++++++- vapour-0.8.5/vapour/README.md | 18 vapour-0.8.5/vapour/build/vignette.rds |binary vapour-0.8.5/vapour/configure | 3 vapour-0.8.5/vapour/configure.ac | 24 vapour-0.8.5/vapour/inst/doc/feature-access.html | 68 - vapour-0.8.5/vapour/inst/doc/vapour.html | 327 +++--- vapour-0.8.5/vapour/inst/include/gdalgeometry/gdalgeometry.h | 6 vapour-0.8.5/vapour/inst/include/gdallibrary/gdallibrary.h | 134 +- vapour-0.8.5/vapour/inst/include/gdalreadwrite |only vapour-0.8.5/vapour/inst/include/gdalwarpmem/gdalwarpmem.h | 271 +++-- vapour-0.8.5/vapour/man/vapour_raster_info.Rd | 2 vapour-0.8.5/vapour/man/vapour_read_raster.Rd | 9 vapour-0.8.5/vapour/man/vapour_read_raster_block.Rd |only vapour-0.8.5/vapour/man/vapour_read_raster_raw.Rd |only vapour-0.8.5/vapour/man/vapour_warp_raster.Rd | 77 + vapour-0.8.5/vapour/man/vapour_warp_raster_raw.Rd |only vapour-0.8.5/vapour/src/00_gdal.cpp |only vapour-0.8.5/vapour/src/00_geometry.cpp |only vapour-0.8.5/vapour/src/00_raster.cpp |only vapour-0.8.5/vapour/src/00_raster_block_io.cpp |only vapour-0.8.5/vapour/src/RcppExports.cpp | 498 +++++----- vapour-0.8.5/vapour/tests/testthat/test-api-funs.R |only vapour-0.8.5/vapour/tests/testthat/test-features.R | 32 vapour-0.8.5/vapour/tests/testthat/test-gdal.R |only vapour-0.8.5/vapour/tests/testthat/test-layers.R |only vapour-0.8.5/vapour/tests/testthat/test-raster-read.R |only vapour-0.8.5/vapour/tests/testthat/test-raster_read_block.R |only vapour-0.8.5/vapour/tests/testthat/test-rasterio-resampling.R | 2 vapour-0.8.5/vapour/tests/testthat/test-vsi_list.R |only vapour-0.8.5/vapour/tests/testthat/test-warper.R | 16 40 files changed, 1413 insertions(+), 789 deletions(-)
Title: Download Data from Bank of Spain
Description: Tools to download data series from 'Banco de España' ('BdE')
on 'tibble' format. 'Banco de España' is the national central bank
and, within the framework of the Single Supervisory Mechanism ('SSM'),
the supervisor of the Spanish banking system along with the European
Central Bank. This package is in no way sponsored endorsed or
administered by 'Banco de España'.
Author: Diego H. Herrero [aut, cre, cph]
(<https://orcid.org/0000-0001-8457-4658>, rOpenSpain)
Maintainer: Diego H. Herrero <dev.dieghernan@gmail.com>
Diff between tidyBdE versions 0.2.0 dated 2021-08-04 and 0.2.1 dated 2021-10-07
tidyBdE-0.2.0/tidyBdE/inst/schemaorg.json |only tidyBdE-0.2.1/tidyBdE/DESCRIPTION | 24 - tidyBdE-0.2.1/tidyBdE/MD5 | 81 +-- tidyBdE-0.2.1/tidyBdE/NAMESPACE | 1 tidyBdE-0.2.1/tidyBdE/NEWS.md | 8 tidyBdE-0.2.1/tidyBdE/R/bde_pals.R | 6 tidyBdE-0.2.1/tidyBdE/R/catalogs.R | 34 - tidyBdE-0.2.1/tidyBdE/R/indicators.R | 7 tidyBdE-0.2.1/tidyBdE/R/scales.R | 4 tidyBdE-0.2.1/tidyBdE/R/series.R | 57 +- tidyBdE-0.2.1/tidyBdE/R/theme_bde.R | 8 tidyBdE-0.2.1/tidyBdE/R/utils.R | 68 ++ tidyBdE-0.2.1/tidyBdE/README.md | 77 ++- tidyBdE-0.2.1/tidyBdE/build/vignette.rds |binary tidyBdE-0.2.1/tidyBdE/inst/CITATION | 25 - tidyBdE-0.2.1/tidyBdE/inst/COPYRIGHTS |only tidyBdE-0.2.1/tidyBdE/inst/WORDLIST |only tidyBdE-0.2.1/tidyBdE/inst/doc/tidyBdE.R | 63 ++ tidyBdE-0.2.1/tidyBdE/inst/doc/tidyBdE.Rmd | 150 ++++-- tidyBdE-0.2.1/tidyBdE/inst/doc/tidyBdE.html | 304 ++++++++----- tidyBdE-0.2.1/tidyBdE/man/bde_catalog_load.Rd | 13 tidyBdE-0.2.1/tidyBdE/man/bde_catalog_search.Rd | 20 tidyBdE-0.2.1/tidyBdE/man/bde_catalog_update.Rd | 14 tidyBdE-0.2.1/tidyBdE/man/bde_check_access.Rd |only tidyBdE-0.2.1/tidyBdE/man/bde_indicators.Rd | 12 tidyBdE-0.2.1/tidyBdE/man/bde_pals.Rd | 68 +- tidyBdE-0.2.1/tidyBdE/man/bde_parse_dates.Rd | 7 tidyBdE-0.2.1/tidyBdE/man/bde_series_full_load.Rd | 12 tidyBdE-0.2.1/tidyBdE/man/bde_series_load.Rd | 21 tidyBdE-0.2.1/tidyBdE/man/figures/README-gdp-1.png |binary tidyBdE-0.2.1/tidyBdE/man/figures/README-macroseries-1.png |binary tidyBdE-0.2.1/tidyBdE/man/figures/README-palettes-1.png |binary tidyBdE-0.2.1/tidyBdE/man/figures/README-palettes-2.png |only tidyBdE-0.2.1/tidyBdE/man/figures/logo.png |binary tidyBdE-0.2.1/tidyBdE/man/scales_bde.Rd | 6 tidyBdE-0.2.1/tidyBdE/man/theme_bde.Rd | 7 tidyBdE-0.2.1/tidyBdE/man/tidyBdE-package.Rd | 14 tidyBdE-0.2.1/tidyBdE/tests/testthat/test-catalogs.R | 6 tidyBdE-0.2.1/tidyBdE/tests/testthat/test-indicators.R | 6 tidyBdE-0.2.1/tidyBdE/tests/testthat/test-series.R | 12 tidyBdE-0.2.1/tidyBdE/vignettes/chart-1.png |binary tidyBdE-0.2.1/tidyBdE/vignettes/gdp-1.png |binary tidyBdE-0.2.1/tidyBdE/vignettes/macroseries-1.png |binary tidyBdE-0.2.1/tidyBdE/vignettes/tidyBdE.Rmd | 150 ++++-- 44 files changed, 833 insertions(+), 452 deletions(-)
Title: 'Rcpp' Integration for 'GNU GSL' Vectors and Matrices
Description: 'Rcpp' integration for 'GNU GSL' vectors and matrices
The 'GNU Scientific Library' (or 'GSL') is a collection of numerical routines for
scientific computing. It is particularly useful for C and C++ programs as it
provides a standard C interface to a wide range of mathematical routines. There
are over 1000 functions in total with an extensive test suite. The 'RcppGSL'
package provides an easy-to-use interface between 'GSL' data structures and
R using concepts from 'Rcpp' which is itself a package that eases the
interfaces between R and C++. This package also serves as a prime example of
how to build a package that uses 'Rcpp' to connect to another third-party
library. The 'autoconf' script, 'inline' plugin and example package can all
be used as a stanza to write a similar package against another library.
Author: Dirk Eddelbuettel and Romain Francois
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppGSL versions 0.3.9 dated 2021-06-23 and 0.3.10 dated 2021-10-07
ChangeLog | 22 +++++++++++++++++++--- DESCRIPTION | 8 ++++---- MD5 | 20 ++++++++++---------- build/partial.rdb |binary build/vignette.rds |binary configure | 35 +++++++++++++++++++---------------- configure.ac | 7 ++++--- inst/NEWS.Rd | 12 ++++++++++-- inst/doc/RcppGSL-intro.pdf |binary inst/tinytest/test_client_package.R | 8 +++++++- man/fastLm.Rd | 2 +- 11 files changed, 74 insertions(+), 40 deletions(-)
Title: Data and Code Behind the Stories and Interactives at
'FiveThirtyEight'
Description: Datasets and code published by the data journalism website
'FiveThirtyEight' available at <https://github.com/fivethirtyeight/data>.
Note that while we received guidance from editors at 'FiveThirtyEight', this
package is not officially published by 'FiveThirtyEight'.
Author: Albert Y. Kim [aut, cre] (<https://orcid.org/0000-0001-7824-306X>),
Chester Ismay [aut] (<https://orcid.org/0000-0003-2820-2547>),
Jennifer Chunn [aut],
Meredith Manley [ctb] (<https://orcid.org/0000-0001-7707-0654>),
Maggie Shea [ctb],
Starry Yujia Zhou [ctb],
Andrew Flowers [ctb],
Jonathan Bouchet [ctb],
G. Elliott Morris [ctb],
Adam Spannbauer [ctb],
Pradeep Adhokshaja [ctb],
Olivia Barrows [ctb],
Jojo Miller [ctb],
Jayla Nakayama [ctb],
Ben Baumer [ctb] (<https://orcid.org/0000-0002-3279-0516>),
Rana Gahwagy [ctb] (<https://orcid.org/0000-0002-6331-2840>),
Natalia Iannucci [ctb] (<https://orcid.org/0000-0001-5663-1731>),
Marium Tapal [ctb] (<https://orcid.org/0000-0001-5093-6462>),
Irene Ryan [ctb],
Alina Barylsky [ctb],
Danica Miguel [ctb],
Sunni Raleigh [ctb],
Anna Ballou [ctb],
Jane Bang [ctb],
Jordan Moody [ctb],
Kara Van Allen [ctb],
Jessica Keast [ctb],
Lizette Carpenter [ctb],
Fatima Keita [ctb]
Maintainer: Albert Y. Kim <albert.ys.kim@gmail.com>
Diff between fivethirtyeight versions 0.6.1 dated 2020-08-05 and 0.6.2 dated 2021-10-07
DESCRIPTION | 6 MD5 | 60 ++++---- NEWS.md | 10 + R/data.R | 34 ++--- build/vignette.rds |binary data/datasets_master.rda |binary inst/doc/fivethirtyeight.Rmd | 2 inst/doc/fivethirtyeight.html | 209 ++++++++++++++++--------------- inst/doc/tame.R | 3 inst/doc/tame.Rmd | 21 +-- inst/doc/tame.html | 63 +++++---- inst/doc/user_contributed_vignettes.html | 23 ++- man/ahca_polls.Rd | 2 man/bechdel.Rd | 2 man/librarians.Rd | 2 man/masculinity_survey.Rd | 2 man/mlb_as_play_talent.Rd | 2 man/mlb_as_team_talent.Rd | 2 man/nfl_fandom_google.Rd | 2 man/nfl_fandom_surveymonkey.Rd | 2 man/nfl_fav_team.Rd | 2 man/nutrition_pvalues.Rd | 4 man/police_killings.Rd | 2 man/spi_global_rankings.Rd | 2 man/tv_hurricanes.Rd | 2 man/tv_hurricanes_by_network.Rd | 2 man/tv_states.Rd | 2 man/undefeated.Rd | 2 vignettes/bibliography.bib | 16 +- vignettes/fivethirtyeight.Rmd | 2 vignettes/tame.Rmd | 21 +-- 31 files changed, 279 insertions(+), 225 deletions(-)
More information about fivethirtyeight at CRAN
Permanent link
Title: Correcting False Discovery Rates
Description: There are many estimators of false discovery rate. In this package we compute the Nonlocal False
Discovery Rate (NFDR) and the estimators of local false discovery rate: Corrected False discovery
Rate (CFDR), Re-ranked False Discovery rate (RFDR) and the blended estimator.
Bickel, D.R., Rahal, A. (2019) <https://tinyurl.com/kkdc9rk8>.
Author: Abbas Rahal, Anna Akpawu, Justin Chitpin and David R. Bickel
Maintainer: Abbas Rahal <Abbas.Rahal13@gmail.com>
Diff between CorrectedFDR versions 1.0 dated 2018-02-14 and 1.1 dated 2021-10-07
DESCRIPTION | 13 ++++++------- MD5 | 10 +++++----- build/partial.rdb |binary man/BlendedLFDR.Rd | 2 +- man/CorrectedFDR-package.Rd | 9 +++++---- man/EstimatorsFDR.Rd | 5 +++-- 6 files changed, 20 insertions(+), 19 deletions(-)
Title: Thematic Cartography
Description: Create and integrate maps in your R workflow. This package helps
to design cartographic representations such as proportional symbols,
choropleth, typology, flows or discontinuities maps. It also offers several
features that improve the graphic presentation of maps, for instance, map
palettes, layout elements (scale, north arrow, title...), labels or legends.
See Giraud and Lambert (2017) <doi:10.1007/978-3-319-57336-6_13>.
Author: Timothée Giraud [cre, aut] (<https://orcid.org/0000-0002-1932-3323>),
Nicolas Lambert [aut],
Diego Hernangómez [ctb] (<https://orcid.org/0000-0001-8457-4658>),
Ian Fellows [cph] (no overlap algorithm for labels, from wordcloud
package)
Maintainer: Timothée Giraud <timothee.giraud@cnrs.fr>
Diff between cartography versions 3.0.0 dated 2021-03-18 and 3.0.1 dated 2021-10-07
DESCRIPTION | 8 MD5 | 62 +- NEWS.md | 7 R/data.R | 18 R/dotDensityLayer.R | 8 R/getBorders.R | 10 R/getFigDim.R | 6 R/getGridLayer.R | 11 R/getOuterBorders.R | 11 R/getTiles.R | 8 README.md | 5 build/vignette.rds |binary inst/doc/cartography.Rmd | 2 inst/doc/cartography.html | 898 ++++++++++++++++++++------------------- inst/doc/cheatsheet.html | 33 + inst/tinytest/test_getPngLayer.R | 24 - man/coasts.spdf.Rd | 2 man/countries.spdf.Rd | 2 man/dotDensityLayer.Rd | 5 man/frame.spdf.Rd | 2 man/getBorders.Rd | 8 man/getFigDim.Rd | 4 man/getGridLayer.Rd | 6 man/getTiles.Rd | 5 man/graticule.spdf.Rd | 2 man/nuts0.spdf.Rd | 2 man/nuts1.spdf.Rd | 2 man/nuts2.spdf.Rd | 2 man/nuts3.spdf.Rd | 2 man/world.spdf.Rd | 2 src/RcppExports.cpp | 5 vignettes/cartography.Rmd | 2 32 files changed, 592 insertions(+), 572 deletions(-)
Title: Database Storage of Genotype Probabilities for QTL Mapping
Description: Uses the 'fst' package to store genotype probabilities on disk for the 'qtl2' package. These genotype probabilities are a central data object for mapping quantitative trait loci (QTL), but they can be quite large. The facilities in this package enable the genotype probabilities to be stored on disk, leading to reduced memory usage with only a modest increase in computation time.
Author: Karl W Broman [aut, cre] (<https://orcid.org/0000-0002-4914-6671>),
Brian S Yandell [aut] (<https://orcid.org/0000-0002-8774-9377>),
Petr Simecek [aut] (<https://orcid.org/0000-0002-2922-7183>)
Maintainer: Karl W Broman <broman@wisc.edu>
Diff between qtl2fst versions 0.24 dated 2021-04-28 and 0.26 dated 2021-10-07
DESCRIPTION | 10 +++++----- MD5 | 20 ++++++++++---------- NEWS.md | 16 +++++++++++++++- R/cbind_fst_genoprob.R | 6 ++++-- R/fst_genoprob.R | 8 +++++++- R/genoprob_to_alleleprob_fst.R | 4 ++++ README.md | 4 ++-- build/vignette.rds |binary inst/doc/qtl2fst.Rmd | 4 ++-- inst/doc/qtl2fst.html | 8 ++++---- vignettes/qtl2fst.Rmd | 4 ++-- 11 files changed, 55 insertions(+), 29 deletions(-)
Title: Import 'OpenStreetMap' Data as Simple Features or Spatial
Objects
Description: Download and import of 'OpenStreetMap' ('OSM') data as 'sf'
or 'sp' objects. 'OSM' data are extracted from the 'Overpass' web
server (<https://overpass-api.de/>) and processed with very fast 'C++'
routines for return to 'R'.
Author: Mark Padgham [aut, cre],
Bob Rudis [aut],
Robin Lovelace [aut],
Maëlle Salmon [aut],
Andrew Smith [ctb],
James Smith [ctb],
Andrea Gilardi [ctb],
Enrico Spinielli [ctb],
Anthony North [ctb],
Marcin Kalicinski [ctb, cph] (Author of included RapidXML code),
Finkelstein Noam [ctb, cph] (Author of included stub.R code),
Bartnik Lukasz [ctb, cph] (Author of included stub.R code)
Maintainer: Mark Padgham <mark.padgham@email.com>
Diff between osmdata versions 0.1.6 dated 2021-07-28 and 0.1.7 dated 2021-10-07
osmdata-0.1.6/osmdata/inst/WORDLIST |only osmdata-0.1.6/osmdata/inst/precommit |only osmdata-0.1.7/osmdata/DESCRIPTION | 64 +++++------------ osmdata-0.1.7/osmdata/MD5 | 25 +++--- osmdata-0.1.7/osmdata/NEWS.md | 9 ++ osmdata-0.1.7/osmdata/R/getbb.R | 8 +- osmdata-0.1.7/osmdata/R/opq.R | 31 ++++++-- osmdata-0.1.7/osmdata/R/wkt4326.R |only osmdata-0.1.7/osmdata/build/vignette.rds |binary osmdata-0.1.7/osmdata/inst/doc/osm-sf-translation.html | 6 - osmdata-0.1.7/osmdata/inst/doc/osmdata-sc.html | 12 +-- osmdata-0.1.7/osmdata/inst/doc/osmdata.html | 6 - osmdata-0.1.7/osmdata/man/add_osm_feature.Rd | 16 ++++ osmdata-0.1.7/osmdata/man/add_osm_features.Rd | 16 ++++ osmdata-0.1.7/osmdata/src/osmdata.h | 17 +++- 15 files changed, 127 insertions(+), 83 deletions(-)
Title: Biodiversity Assessment Tools
Description: Includes algorithms to assess alpha and beta diversity
in all their dimensions (taxonomic, phylogenetic and functional).
It allows performing a number of analyses based on species
identities/abundances, phylogenetic/functional distances, trees,
convex-hulls or kernel density n-dimensional hypervolumes
depicting species relationships.
Cardoso et al. (2015) <doi:10.1111/2041-210X.12310>.
Author: Pedro Cardoso [aut, cre],
Stefano Mammola [aut],
Francois Rigal [aut],
Jose Carvalho [aut]
Maintainer: Pedro Cardoso <pedro.cardoso@helsinki.fi>
Diff between BAT versions 2.7.0 dated 2021-08-02 and 2.7.1 dated 2021-10-07
DESCRIPTION | 10 ++-- MD5 | 10 ++-- NAMESPACE | 1 R/BAT.R | 110 ++++++++++++++++++++++++++++++---------------------- man/beta.Rd | 6 +- man/kernel.build.Rd | 10 ++-- 6 files changed, 84 insertions(+), 63 deletions(-)
More information about SIMPLE.REGRESSION at CRAN
Permanent link
Title: High Performance Algorithms for Vine Copula Modeling
Description: Provides an interface to 'vinecopulib', a C++ library for vine
copula modeling. The 'rvinecopulib' package implements the core features of the
popular 'VineCopula' package, in particular inference algorithms for both vine
copula and bivariate copula models. Advantages over 'VineCopula' are a sleeker
and more modern API, improved performances, especially in high dimensions,
nonparametric and multi-parameter families, and the ability to model discrete
variables. The 'rvinecopulib' package includes 'vinecopulib' as header-only
C++ library (currently version 0.6.1). Thus users do not need to install
'vinecopulib' itself in order to use 'rvinecopulib'. Since their initial
releases, 'vinecopulib' is licensed under the MIT License, and 'rvinecopulib'
is licensed under the GNU GPL version 3.
Author: Thomas Nagler [aut, cre],
Thibault Vatter [aut]
Maintainer: Thomas Nagler <info@vinecopulib.org>
Diff between rvinecopulib versions 0.5.5.1.1 dated 2021-01-06 and 0.6.1.1.1 dated 2021-10-07
DESCRIPTION | 9 MD5 | 169 +++++----- NEWS.md | 26 + R/bicop.R | 4 R/vine_methods.R | 2 R/vinecop.R | 12 R/vinecop_methods.R | 19 - R/vinecop_plot.R | 13 README.md | 7 inst/include/vinecopulib.hpp | 3 inst/include/vinecopulib/bicop/abstract.hpp | 6 inst/include/vinecopulib/bicop/archimedean.hpp | 2 inst/include/vinecopulib/bicop/bb1.hpp | 2 inst/include/vinecopulib/bicop/bb6.hpp | 2 inst/include/vinecopulib/bicop/bb7.hpp | 2 inst/include/vinecopulib/bicop/bb8.hpp | 6 inst/include/vinecopulib/bicop/class.hpp | 10 inst/include/vinecopulib/bicop/clayton.hpp | 2 inst/include/vinecopulib/bicop/elliptical.hpp | 2 inst/include/vinecopulib/bicop/family.hpp | 2 inst/include/vinecopulib/bicop/fit_controls.hpp | 2 inst/include/vinecopulib/bicop/frank.hpp | 2 inst/include/vinecopulib/bicop/gaussian.hpp | 2 inst/include/vinecopulib/bicop/gumbel.hpp | 2 inst/include/vinecopulib/bicop/implementation/abstract.ipp | 2 inst/include/vinecopulib/bicop/implementation/archimedean.ipp | 2 inst/include/vinecopulib/bicop/implementation/bb1.ipp | 2 inst/include/vinecopulib/bicop/implementation/bb6.ipp | 3 inst/include/vinecopulib/bicop/implementation/bb7.ipp | 3 inst/include/vinecopulib/bicop/implementation/bb8.ipp | 3 inst/include/vinecopulib/bicop/implementation/class.ipp | 64 +-- inst/include/vinecopulib/bicop/implementation/clayton.ipp | 2 inst/include/vinecopulib/bicop/implementation/elliptical.ipp | 2 inst/include/vinecopulib/bicop/implementation/family.ipp | 36 +- inst/include/vinecopulib/bicop/implementation/fit_controls.ipp | 2 inst/include/vinecopulib/bicop/implementation/frank.ipp | 6 inst/include/vinecopulib/bicop/implementation/gaussian.ipp | 5 inst/include/vinecopulib/bicop/implementation/gumbel.ipp | 2 inst/include/vinecopulib/bicop/implementation/indep.ipp | 5 inst/include/vinecopulib/bicop/implementation/joe.ipp | 8 inst/include/vinecopulib/bicop/implementation/kernel.ipp | 13 inst/include/vinecopulib/bicop/implementation/parametric.ipp | 10 inst/include/vinecopulib/bicop/implementation/student.ipp | 8 inst/include/vinecopulib/bicop/implementation/tll.ipp | 7 inst/include/vinecopulib/bicop/implementation/tools_select.ipp | 8 inst/include/vinecopulib/bicop/indep.hpp | 2 inst/include/vinecopulib/bicop/joe.hpp | 2 inst/include/vinecopulib/bicop/kernel.hpp | 6 inst/include/vinecopulib/bicop/parametric.hpp | 6 inst/include/vinecopulib/bicop/student.hpp | 2 inst/include/vinecopulib/bicop/tll.hpp | 2 inst/include/vinecopulib/bicop/tools_select.hpp | 2 inst/include/vinecopulib/misc/implementation/tools_eigen.ipp | 2 inst/include/vinecopulib/misc/implementation/tools_interpolation.ipp | 2 inst/include/vinecopulib/misc/implementation/tools_optimization.ipp | 2 inst/include/vinecopulib/misc/implementation/tools_stats.ipp | 2 inst/include/vinecopulib/misc/nlohmann_json.hpp |only inst/include/vinecopulib/misc/tools_batch.hpp | 2 inst/include/vinecopulib/misc/tools_bobyqa.hpp | 2 inst/include/vinecopulib/misc/tools_constants.hpp | 2 inst/include/vinecopulib/misc/tools_eigen.hpp | 5 inst/include/vinecopulib/misc/tools_integration.hpp | 2 inst/include/vinecopulib/misc/tools_interface.hpp | 2 inst/include/vinecopulib/misc/tools_interpolation.hpp | 2 inst/include/vinecopulib/misc/tools_optimization.hpp | 2 inst/include/vinecopulib/misc/tools_serialization.hpp | 153 +++------ inst/include/vinecopulib/misc/tools_stats.hpp | 2 inst/include/vinecopulib/misc/tools_stats_ghalton.hpp | 2 inst/include/vinecopulib/misc/tools_stats_sobol.hpp | 2 inst/include/vinecopulib/misc/tools_stl.hpp | 2 inst/include/vinecopulib/misc/tools_thread.hpp | 2 inst/include/vinecopulib/misc/triangular_array.hpp | 2 inst/include/vinecopulib/version.hpp | 6 inst/include/vinecopulib/vinecop/class.hpp | 9 inst/include/vinecopulib/vinecop/fit_controls.hpp | 2 inst/include/vinecopulib/vinecop/implementation/class.ipp | 116 +++--- inst/include/vinecopulib/vinecop/implementation/fit_controls.ipp | 2 inst/include/vinecopulib/vinecop/implementation/rvine_structure.ipp | 50 +- inst/include/vinecopulib/vinecop/implementation/tools_select.ipp | 6 inst/include/vinecopulib/vinecop/rvine_structure.hpp | 11 inst/include/vinecopulib/vinecop/tools_select.hpp | 2 man/bicop.Rd | 4 man/plot.vinecop_dist.Rd | 13 man/vinecop.Rd | 12 src/RcppExports.cpp | 5 tests/testthat/Rplots.pdf |binary 86 files changed, 510 insertions(+), 443 deletions(-)
Title: Computing Optimal Cutpoints in Diagnostic Tests
Description: Computes optimal cutpoints for diagnostic tests or continuous markers. Various approaches for selecting optimal cutoffs have been implemented, including methods based on cost-benefit analysis and diagnostic test accuracy measures (Sensitivity/Specificity, Predictive Values and Diagnostic Likelihood Ratios). Numerical and graphical output for all methods is easily obtained.
Author: Monica Lopez-Raton, Maria Xose Rodriguez-Alvarez
Maintainer: Monica Lopez Raton <monica.lopez.raton@gmail.com>
Diff between OptimalCutpoints versions 1.1-4 dated 2019-04-01 and 1.1-5 dated 2021-10-07
DESCRIPTION | 8 MD5 | 9 build |only inst/CITATION | 4 man/OptimalCutpoints-package.Rd | 80 ++--- man/optimal.cutpoints.Rd | 636 ++++++++++++++++++++-------------------- 6 files changed, 369 insertions(+), 368 deletions(-)
More information about OptimalCutpoints at CRAN
Permanent link
Title: Distributed Lag Non-Linear Models
Description: Collection of functions for distributed lag linear and non-linear models.
Author: Antonio Gasparrini [aut, cre],
Ben Armstrong [aut],
Fabian Scheipl [ctb]
Maintainer: Antonio Gasparrini <antonio.gasparrini@lshtm.ac.uk>
Diff between dlnm versions 2.4.6 dated 2021-06-15 and 2.4.7 dated 2021-10-07
DESCRIPTION | 8 ++++---- MD5 | 24 ++++++++++++------------ build/vignette.rds |binary inst/CITATION | 5 +++-- inst/doc/dlnmExtended.pdf |binary inst/doc/dlnmOverview.Rnw | 2 +- inst/doc/dlnmOverview.pdf |binary inst/doc/dlnmPenalized.pdf |binary inst/doc/dlnmTS.pdf |binary man/chicagoNMMAPS.Rd | 6 +----- man/plot.crosspred.Rd | 4 ++-- vignettes/biblioVignette.bib | 22 +++++++++++----------- vignettes/dlnmOverview.Rnw | 2 +- 13 files changed, 35 insertions(+), 38 deletions(-)
Title: Search and Retrieve Data from Eurostat Database
Description: Eurostat is the statistical office of the European Union and provides high quality statistics for Europe.
Large set of the data is disseminated through the Eurostat database (<https://ec.europa.eu/eurostat/data/database>).
The tools are using the REST API with the Statistical Data and Metadata eXchange (SDMX) Web Services
(<https://ec.europa.eu/eurostat/web/sdmx-web-services/about-this-service>) to search and download data from
the Eurostat database using the SDMX standard.
Author: Mátyás Mészáros [aut, cre]
Maintainer: Mátyás Mészáros <matyas.meszaros@ec.europa.eu>
Diff between restatapi versions 0.11.3 dated 2021-09-15 and 0.12.3 dated 2021-10-07
DESCRIPTION | 10 - MD5 | 66 +++---- NEWS.md | 21 ++ R/clean_restatapi_cache.R | 2 R/create_filter_table.R | 7 R/extract_data.R | 2 R/extract_dsd.R | 7 R/extract_toc.R | 2 R/filter_raw_data.R | 4 R/get_compressed_sdmx.R | 11 - R/get_eurostat_bulk.R | 6 R/get_eurostat_cache.R | 6 R/get_eurostat_data.R | 33 +++ R/get_eurostat_dsd.R | 9 - R/get_eurostat_raw.R | 4 R/get_eurostat_toc.R | 4 R/load_cfg.R | 6 R/search_eurostat_dsd.R | 5 R/search_eurostat_toc.R | 10 - inst/tinytest/test_restatapi.R | 343 ++++++++++++++++++++++------------------- man/create_filter_table.Rd | 5 man/extract_data.Rd | 2 man/extract_dsd.Rd | 7 man/extract_toc.Rd | 2 man/filter_raw_data.Rd | 3 man/get_compressed_sdmx.Rd | 3 man/get_eurostat_bulk.Rd | 2 man/get_eurostat_data.Rd | 2 man/get_eurostat_dsd.Rd | 7 man/get_eurostat_raw.Rd | 2 man/get_eurostat_toc.Rd | 2 man/load_cfg.Rd | 3 man/search_eurostat_dsd.Rd | 5 man/search_eurostat_toc.Rd | 10 - 34 files changed, 373 insertions(+), 240 deletions(-)
Title: Classical Goodness-of-Fit Tests for Univariate Distributions
Description: Cramer-Von Mises and Anderson-Darling tests of goodness-of-fit
for continuous univariate distributions, using
efficient algorithms.
Author: Julian Faraway [aut],
George Marsaglia [aut],
John Marsaglia [aut],
Adrian Baddeley [aut, cre]
Maintainer: Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>
Diff between goftest versions 1.2-2 dated 2019-12-02 and 1.2-3 dated 2021-10-07
DESCRIPTION | 8 ++++---- MD5 | 9 +++++---- build |only man/ad.test.Rd | 2 +- man/goftest-package.Rd | 2 +- man/pAD.Rd | 2 +- 6 files changed, 12 insertions(+), 11 deletions(-)
Title: Tensors and Neural Networks with 'GPU' Acceleration
Description: Provides functionality to define and train neural networks similar to
'PyTorch' by Paszke et al (2019) <arXiv:1912.01703> but written entirely in R
using the 'libtorch' library. Also supports low-level tensor operations and
'GPU' acceleration.
Author: Daniel Falbel [aut, cre, cph],
Javier Luraschi [aut],
Dmitriy Selivanov [ctb],
Athos Damiani [ctb],
Christophe Regouby [ctb],
Krzysztof Joachimiak [ctb],
RStudio [cph]
Maintainer: Daniel Falbel <daniel@rstudio.com>
Diff between torch versions 0.5.0 dated 2021-08-17 and 0.6.0 dated 2021-10-07
torch-0.5.0/torch/vignettes/model.pt |only torch-0.5.0/torch/vignettes/path.pt |only torch-0.5.0/torch/vignettes/tensor.pt |only torch-0.6.0/torch/DESCRIPTION | 6 torch-0.6.0/torch/MD5 | 135 +++++++------- torch-0.6.0/torch/NAMESPACE | 3 torch-0.6.0/torch/NEWS.md | 23 ++ torch-0.6.0/torch/R/gen-namespace.R | 4 torch-0.6.0/torch/R/install.R | 2 torch-0.6.0/torch/R/nn-conv.R | 48 +++-- torch-0.6.0/torch/R/nn.R | 62 ++++-- torch-0.6.0/torch/R/nnf-loss.R | 5 torch-0.6.0/torch/R/optim-adadelta.R | 2 torch-0.6.0/torch/R/optim-adagrad.R | 2 torch-0.6.0/torch/R/optim-adam.R | 2 torch-0.6.0/torch/R/optim-asgd.R | 2 torch-0.6.0/torch/R/optim-lbfgs.R | 2 torch-0.6.0/torch/R/optim-rmsprop.R | 2 torch-0.6.0/torch/R/optim-rprop.R | 2 torch-0.6.0/torch/R/optim-sgd.R | 2 torch-0.6.0/torch/R/optim.R | 2 torch-0.6.0/torch/R/tensor.R | 10 + torch-0.6.0/torch/R/utils-data.R | 9 torch-0.6.0/torch/R/utils.R | 6 torch-0.6.0/torch/R/with-indices.R | 11 + torch-0.6.0/torch/build/partial.rdb |binary torch-0.6.0/torch/inst/doc/distributions.R | 90 ++++----- torch-0.6.0/torch/inst/doc/distributions.html | 101 +++++++++- torch-0.6.0/torch/inst/doc/extending-autograd.R | 96 +++++----- torch-0.6.0/torch/inst/doc/extending-autograd.html | 5 torch-0.6.0/torch/inst/doc/indexing.R | 80 ++++---- torch-0.6.0/torch/inst/doc/indexing.html | 160 ++++++++++++++-- torch-0.6.0/torch/inst/doc/loading-data.R | 160 ++++++++-------- torch-0.6.0/torch/inst/doc/loading-data.html | 78 +++++++- torch-0.6.0/torch/inst/doc/serialization.R | 86 ++++----- torch-0.6.0/torch/inst/doc/serialization.html | 23 +- torch-0.6.0/torch/inst/doc/tensor-creation.R | 32 +-- torch-0.6.0/torch/inst/doc/tensor-creation.html | 57 +++++- torch-0.6.0/torch/inst/doc/torchscript.R | 114 ++++++------ torch-0.6.0/torch/inst/doc/torchscript.html | 123 +++++++++++-- torch-0.6.0/torch/inst/doc/using-autograd.R | 198 ++++++++++----------- torch-0.6.0/torch/inst/doc/using-autograd.html | 86 +++++++-- torch-0.6.0/torch/man/macros/teqn.Rd | 2 torch-0.6.0/torch/man/nn_conv1d.Rd | 2 torch-0.6.0/torch/man/nn_conv2d.Rd | 6 torch-0.6.0/torch/man/nn_conv3d.Rd | 2 torch-0.6.0/torch/man/nn_sequential.Rd | 4 torch-0.6.0/torch/man/optim_adadelta.Rd | 10 - torch-0.6.0/torch/man/optim_adagrad.Rd | 9 torch-0.6.0/torch/man/optim_adam.Rd | 9 torch-0.6.0/torch/man/optim_asgd.Rd | 9 torch-0.6.0/torch/man/optim_lbfgs.Rd | 7 torch-0.6.0/torch/man/optim_rmsprop.Rd | 9 torch-0.6.0/torch/man/optim_rprop.Rd | 10 - torch-0.6.0/torch/man/optim_sgd.Rd | 9 torch-0.6.0/torch/man/optimizer.Rd | 10 - torch-0.6.0/torch/man/rmd/optim-note.Rmd |only torch-0.6.0/torch/src/indexing.cpp | 66 ++++--- torch-0.6.0/torch/src/script_module.cpp | 2 torch-0.6.0/torch/src/tensor.cpp | 2 torch-0.6.0/torch/src/torch_types.cpp | 12 + torch-0.6.0/torch/tests/testthat/_snaps/tensor.md | 27 ++ torch-0.6.0/torch/tests/testthat/test-indexing.R | 30 +++ torch-0.6.0/torch/tests/testthat/test-nn-conv.R | 9 torch-0.6.0/torch/tests/testthat/test-nn-loss.R | 5 torch-0.6.0/torch/tests/testthat/test-nn.R | 54 +++++ torch-0.6.0/torch/tests/testthat/test-tensor.R | 11 + torch-0.6.0/torch/tests/testthat/test-utils-data.R | 15 + torch-0.6.0/torch/tools/create-decls.R | 4 torch-0.6.0/torch/tools/revdep.R |only torch-0.6.0/torch/tools/torchgen/R/r.R | 2 71 files changed, 1501 insertions(+), 667 deletions(-)
Title: Spatial Data Analysis
Description: Methods for spatial data analysis with raster and vector data. Raster methods allow for low-level data manipulation as well as high-level global, local, zonal, and focal computation. The predict and interpolate methods facilitate the use of regression type (interpolation, machine learning) models for spatial prediction, including with satellite remote sensing data. Processing of very large files is supported. See the manual and tutorials on <https://rspatial.org/terra/> to get started. 'terra' is very similar to the 'raster' package; but 'terra' can do more, is easier to use, and it is faster.
Author: Robert J. Hijmans [cre, aut] (<https://orcid.org/0000-0001-5872-2872>),
Roger Bivand [ctb] (<https://orcid.org/0000-0003-2392-6140>),
Karl Forner [ctb],
Jeroen Ooms [ctb] (<https://orcid.org/0000-0002-4035-0289>),
Edzer Pebesma [ctb] (<https://orcid.org/0000-0001-8049-7069>)
Maintainer: Robert J. Hijmans <r.hijmans@gmail.com>
Diff between terra versions 1.4-7 dated 2021-10-05 and 1.4-9 dated 2021-10-07
DESCRIPTION | 8 +-- MD5 | 66 ++++++++++++++++---------------- NAMESPACE | 2 NEWS.md | 19 ++++++++- R/Agenerics.R | 4 - R/Zdeprecated.R | 6 -- R/clean.R | 2 R/coerce.R | 96 ++++++++++++++++++++++++----------------------- R/extent.R | 16 ------- R/extract.R | 4 + R/generics.R | 28 +++++++++---- R/geom.R | 32 +++++++-------- R/hist.R | 8 ++- R/levels.R | 8 ++- R/plot.R | 7 +++ R/sample.R | 2 man/aggregate.Rd | 2 man/contour.Rd | 2 man/crop.Rd | 12 +---- man/disaggregate.Rd | 18 ++++---- man/ext.Rd | 3 - man/project.Rd | 18 +++++--- man/resample.Rd | 16 +++---- man/shade.Rd | 2 man/terra-package.Rd | 5 +- src/RcppModule.cpp | 2 src/distRaster.cpp | 46 +++++++++++++++------- src/extract.cpp | 32 +++++++++++---- src/read_gdal.cpp | 1 src/spatDataframe.h | 3 - src/spatRaster.cpp | 14 +++++- src/spatRaster.h | 5 +- src/write_gdal.cpp | 11 ++++- src/write_ogr.cpp | 104 +++++++++++++++++++++++++++++++++++++++++++++++++++ 34 files changed, 392 insertions(+), 212 deletions(-)
Title: Predicting Ethnic Group from Names
Description: Implementation of the ethnicity prediction method, described
in "Rethnicity: Predicting Ethnicity from Names" by Fangzhou Xie (2021) <arXiv:2109.09228>.
Author: Fangzhou Xie [aut, cre] (<https://orcid.org/0000-0001-7702-093X>)
Maintainer: Fangzhou Xie <fangzhou.xie@rutgers.edu>
Diff between rethnicity versions 0.1.1 dated 2021-09-22 and 0.1.2 dated 2021-10-07
DESCRIPTION | 8 +-- MD5 | 14 ++--- NEWS.md | 3 + README.md | 112 +++++---------------------------------------- inst/doc/introduction.R | 7 +- inst/doc/introduction.Rmd | 17 ++++-- inst/doc/introduction.html | 30 ++++++------ vignettes/introduction.Rmd | 17 ++++-- 8 files changed, 67 insertions(+), 141 deletions(-)
Title: Interface with 'Nominatim' API Service
Description: Lite interface for getting data from 'OSM' service
'Nominatim' <https://nominatim.org/release-docs/latest/>. Extract
coordinates from addresses, find places near a set of coordinates,
search for amenities and return spatial objects on 'sf' format.
Author: Diego Hernangómez [aut, cre, cph]
(<https://orcid.org/0000-0001-8457-4658>),
Jindra Lacko [ctb, rev],
OpenStreetMap contributors [cph] (for the data.)
Maintainer: Diego Hernangómez <diego.hernangomezherrero@gmail.com>
Diff between nominatimlite versions 0.1.1 dated 2021-09-30 and 0.1.2 dated 2021-10-07
DESCRIPTION | 6 +- MD5 | 83 ++++++++++++++-------------- NAMESPACE | 1 NEWS.md | 6 ++ R/bbox_to_poly.R | 2 R/geo_address_lookup.R | 6 +- R/geo_address_lookup_sf.R | 6 +- R/geo_amenity.R | 6 +- R/geo_amenity_sf.R | 6 +- R/geo_lite.R | 4 - R/geo_lite_sf.R | 4 - R/nominatim_check_access.R |only R/reverse_geo_lite.R | 2 R/reverse_geo_lite_sf.R | 8 +- README.md | 33 ++++++----- data/osm_amenities.rda |binary inst/doc/nominatimlite.R | 14 ++-- inst/doc/nominatimlite.Rmd | 1 inst/doc/nominatimlite.html | 13 ++-- man/bbox_to_poly.Rd | 2 man/figures/README-McDonalds-1.png |binary man/figures/README-line-object-1.png |binary man/figures/README-penta-1.png |binary man/geo_address_lookup.Rd | 2 man/geo_address_lookup_sf.Rd | 2 man/geo_amenity.Rd | 3 - man/geo_amenity_sf.Rd | 2 man/geo_lite.Rd | 2 man/geo_lite_sf.Rd | 2 man/nominatim_check_access.Rd |only man/reverse_geo_lite.Rd | 2 man/reverse_geo_lite_sf.Rd | 2 tests/testthat/test-check_access.R |only tests/testthat/test-geo_address_lookup.R | 11 ++- tests/testthat/test-geo_address_lookup_sf.R | 8 ++ tests/testthat/test-geo_amenity.R | 16 ++++- tests/testthat/test-geo_amenity_sf.R | 14 ++++ tests/testthat/test-geo_lite.R | 12 ++-- tests/testthat/test-geo_lite_sf.R | 11 +++ tests/testthat/test-reverse_geo_lite.R | 23 +++++++ tests/testthat/test-reverse_geo_lite_sf.R | 19 ++++++ vignettes/McDonalds-1.png |binary vignettes/nominatimlite.Rmd | 1 vignettes/penta-1.png |binary 44 files changed, 220 insertions(+), 115 deletions(-)
Title: Harrell Miscellaneous
Description: Contains many functions useful for data
analysis, high-level graphics, utility operations, functions for
computing sample size and power, simulation, importing and annotating datasets,
imputing missing values, advanced table making, variable clustering,
character string manipulation, conversion of R objects to LaTeX and html code,
and recoding variables.
Author: Frank E Harrell Jr [aut, cre] (<https://orcid.org/0000-0002-8271-5493>),
Charles Dupont [ctb] (contributed several functions and maintains latex
functions)
Maintainer: Frank E Harrell Jr <fh@fharrell.com>
Diff between Hmisc versions 4.5-0 dated 2021-02-28 and 4.6-0 dated 2021-10-07
DESCRIPTION | 26 +++- MD5 | 109 ++++++++++---------- NAMESPACE | 2 NEWS | 30 +++++ R/Misc.s | 14 +- R/combplotp.r | 44 ++++---- R/describe.s | 17 +-- R/dotchart3.s | 9 + R/dotchartpl.s | 3 R/ecdf.s | 6 - R/fit.mult.impute.s | 2 R/gbayesSeqSim.r | 44 ++++---- R/ggfreqScatter.r | 4 R/ggplotlyr.r |only R/histSpikeg.s | 2 R/html.s | 35 +++++- R/labcurve.s | 20 +-- R/latex.s | 2 R/latexTherm.s | 8 - R/mdb.get.s | 9 + R/multLines.s | 2 R/na.delete.s | 1 R/panel.bpplot.s | 3 R/plot.describe.s | 2 R/plotCorrM.r |only R/plotlyM.r | 7 - R/plsmo.s | 8 - R/popower.s | 13 +- R/rcspline.plot.s | 2 R/rcspline.restate.s | 6 - R/sas.get.s | 14 ++ R/scat1d.s | 12 ++ R/sedit.s | 6 - R/simMarkovOrd.r | 251 ++++++++++++++++++++++++++++++++++++++++------- R/spower.s | 10 - R/stat-plsmo.r | 2 R/summary.formula.s | 14 +- R/summaryM.s | 6 - R/tabulr.s | 8 + R/transace.s | 5 man/combplotp.Rd | 42 ++++--- man/estSeqMarkovOrd.Rd | 16 ++ man/estSeqSim.Rd | 44 ++++---- man/first.word.Rd | 2 man/format.df.Rd | 2 man/ggplotlyr.Rd |only man/intMarkovOrd.Rd | 2 man/multLines.Rd | 12 +- man/plotCorrM.Rd |only man/plotCorrPrecision.Rd | 2 man/popower.Rd | 2 man/soprobMarkovOrdm.Rd |only man/unix/sas.get.Rd | 4 man/valueTags.Rd | 2 man/windows/sas.get.Rd | 6 - src/Hmisc.c | 4 src/Hmisc.h | 1 src/mChoice.c | 6 - 58 files changed, 629 insertions(+), 276 deletions(-)
Title: Google Analytics API into R
Description: Interact with the Google Analytics
APIs <https://developers.google.com/analytics/>, including
the Core Reporting API (v3 and v4), Management API, User Activity API
GA4's Data API and Admin API and Multi-Channel Funnel API.
Author: Mark Edmondson [aut, cre] (<https://orcid.org/0000-0002-8434-3881>),
Artem Klevtsov [ctb],
Johann deBoer [ctb],
David Watkins [ctb],
Olivia Brode-Roger [ctb],
Jas Sohi [ctb],
Zoran Selinger [ctb],
Octavian Corlade [ctb],
Maegan Whytock [ctb]
Maintainer: Mark Edmondson <m@sunholo.com>
Diff between googleAnalyticsR versions 1.0.0 dated 2021-04-17 and 1.0.1 dated 2021-10-07
googleAnalyticsR-1.0.0/googleAnalyticsR/tests |only googleAnalyticsR-1.0.1/googleAnalyticsR/DESCRIPTION | 12 +- googleAnalyticsR-1.0.1/googleAnalyticsR/MD5 | 43 +--------- googleAnalyticsR-1.0.1/googleAnalyticsR/NEWS.md | 5 + googleAnalyticsR-1.0.1/googleAnalyticsR/R/auth.R | 2 googleAnalyticsR-1.0.1/googleAnalyticsR/R/measurement_protocol.R | 6 - googleAnalyticsR-1.0.1/googleAnalyticsR/README.md | 2 7 files changed, 23 insertions(+), 47 deletions(-)
More information about googleAnalyticsR at CRAN
Permanent link
Title: Estimation of Fractal Dimensions
Description: Implements various methods for estimating fractal dimension of time series and 2-dimensional data <doi:10.1214/11-STS370>.
Author: Hana Sevcikova <hanas@uw.edu>,
Don Percival <dbp@apl.washington.edu>,
Tilmann Gneiting <tilmann@stat.washington.edu>
Maintainer: Hana Sevcikova <hanas@uw.edu>
Diff between fractaldim versions 0.8-4 dated 2014-02-24 and 0.8-5 dated 2021-10-07
DESCRIPTION | 12 ++++++------ MD5 | 16 ++++++++-------- NAMESPACE | 4 +++- R/fractaldim.R | 6 ++---- R/spectral.R | 5 +++-- R/variation.R | 5 +++-- man/fd.estimate.method.Rd | 4 +++- man/fractaldim-package.Rd | 12 ++---------- tests/run_tests.R | 15 +++++++++------ 9 files changed, 39 insertions(+), 40 deletions(-)
Title: Distances on Directed Graphs
Description: Distances on dual-weighted directed graphs using
priority-queue shortest paths (Padgham (2019) <doi:10.32866/6945>).
Weighted directed graphs have weights from A to B which may differ
from those from B to A. Dual-weighted directed graphs have two sets
of such weights. A canonical example is a street network to be used
for routing in which routes are calculated by weighting distances
according to the type of way and mode of transport, yet lengths of
routes must be calculated from direct distances.
Author: Mark Padgham [aut, cre],
Andreas Petutschnig [aut],
Robin Lovelace [ctb],
Andrew Smith [ctb],
Malcolm Morgan [ctb],
Shane Saunders [cph] (Original author of included code for priority
heaps)
Maintainer: Mark Padgham <mark.padgham@email.com>
Diff between dodgr versions 0.2.9 dated 2021-08-07 and 0.2.11 dated 2021-10-07
DESCRIPTION | 44 ++---- MD5 | 215 ++++++++++++++++---------------- NAMESPACE | 2 NEWS.md | 8 + R/RcppExports.R | 27 +++- R/centrality.R | 5 R/compare-heaps.R | 1 R/dists-categorical.R |only R/dists.R | 2 R/dodgr-package.R | 3 R/dodgr-streetnet.R | 4 R/flowmap.R | 1 R/flows.R | 7 - R/fund-cycles.R | 7 - R/graph-contraction.R | 2 R/graph-conversion.R | 5 R/graph-functions-misc.R | 2 R/graph-functions.R | 4 R/graph-merge.R | 1 R/iso.R | 3 R/paths.R | 1 R/times.R | 1 R/utils.R | 3 R/weight-streetnet.R | 7 - R/weighting_profiles.R | 1 README.md | 21 ++- build/vignette.rds |binary inst/doc/dists-categorical.R |only inst/doc/dists-categorical.Rmd |only inst/doc/dists-categorical.html |only inst/doc/dodgr.html | 130 ++++++++----------- inst/doc/flows.html | 12 - inst/doc/times.html | 18 +- man/clear_dodgr_cache.Rd | 6 man/compare_heaps.Rd | 16 ++ man/dodgr_cache_off.Rd | 6 man/dodgr_cache_on.Rd | 6 man/dodgr_centrality.Rd | 6 man/dodgr_components.Rd | 6 man/dodgr_contract_graph.Rd | 6 man/dodgr_distances.Rd | 14 ++ man/dodgr_dists.Rd | 14 ++ man/dodgr_dists_categorical.Rd |only man/dodgr_flowmap.Rd | 16 ++ man/dodgr_flows_aggregate.Rd | 14 ++ man/dodgr_flows_disperse.Rd | 14 ++ man/dodgr_flows_si.Rd | 14 ++ man/dodgr_full_cycles.Rd | 16 ++ man/dodgr_fundamental_cycles.Rd | 16 ++ man/dodgr_insert_vertex.Rd | 16 ++ man/dodgr_isochrones.Rd | 14 ++ man/dodgr_isodists.Rd | 14 ++ man/dodgr_isoverts.Rd | 14 ++ man/dodgr_paths.Rd | 14 ++ man/dodgr_sample.Rd | 16 ++ man/dodgr_sflines_to_poly.Rd | 16 ++ man/dodgr_streetnet.Rd | 7 + man/dodgr_streetnet_sc.Rd | 7 + man/dodgr_times.Rd | 14 ++ man/dodgr_to_igraph.Rd | 7 + man/dodgr_to_sf.Rd | 8 + man/dodgr_to_sfc.Rd | 8 + man/dodgr_to_tidygraph.Rd | 8 + man/dodgr_uncontract_graph.Rd | 6 man/dodgr_vertices.Rd | 16 ++ man/estimate_centrality_threshold.Rd | 6 man/estimate_centrality_time.Rd | 6 man/hampi.Rd | 6 man/igraph_to_dodgr.Rd | 7 + man/match_points_to_graph.Rd | 16 ++ man/match_pts_to_graph.Rd | 16 ++ man/merge_directed_graph.Rd | 16 ++ man/os_roads_bristol.Rd | 6 man/summary.dodgr_dists_categorical.Rd |only man/weight_railway.Rd | 7 + man/weight_streetnet.Rd | 21 +++ man/weighting_profiles.Rd | 6 man/write_dodgr_wt_profile.Rd | 15 ++ src/Makevars | 2 src/Makevars.win | 2 src/RcppExports.cpp | 37 +++++ src/centrality.cpp | 60 ++++---- src/dgraph.cpp | 30 ++-- src/dgraph.h | 18 +- src/dodgr-to-sf.h | 6 src/flows.cpp | 197 ++++++++++++++--------------- src/graph-contract.cpp | 15 +- src/graph-sample.cpp | 42 +++--- src/graph.cpp | 123 +++++++++--------- src/graph.h | 22 +-- src/heaps/bheap.cpp | 24 +-- src/heaps/bheap.h | 48 +++---- src/heaps/fheap.cpp | 40 ++--- src/heaps/fheap.h | 20 +- src/heaps/heap.h | 20 +- src/heaps/heap23.cpp | 48 +++---- src/heaps/heap23.h | 20 +- src/heaps/heap23_2.h | 22 +-- src/heaps/triheap.cpp | 60 ++++---- src/heaps/triheap.h | 25 +-- src/heaps/triheap_ext.cpp | 60 ++++---- src/heaps/triheap_ext.h | 29 +--- src/pathfinders.cpp | 56 ++++---- src/pathfinders.h | 83 ++++++++---- src/run_sp.cpp | 165 ++++++++++++------------ src/run_sp.h | 26 +++ src/run_sp_categorical.cpp |only src/sf-as-network.cpp | 31 ++-- src/sf-as-network.h | 2 tests/testthat/test-cache.R | 8 - tests/testthat/test-dists-categorical.R |only tests/testthat/test-streetnet.R | 15 +- vignettes/dists-categorical.Rmd |only 113 files changed, 1511 insertions(+), 865 deletions(-)
Title: Solvers for Initial Value Problems of Differential Equations
('ODE', 'DAE', 'DDE')
Description: Functions that solve initial value problems of a system
of first-order ordinary differential equations ('ODE'), of
partial differential equations ('PDE'), of differential
algebraic equations ('DAE'), and of delay differential
equations. The functions provide an interface to the FORTRAN
functions 'lsoda', 'lsodar', 'lsode', 'lsodes' of the 'ODEPACK'
collection, to the FORTRAN functions 'dvode', 'zvode' and 'daspk'
and a C-implementation of solvers of the 'Runge-Kutta' family with
fixed or variable time steps. The package contains routines
designed for solving 'ODEs' resulting from 1-D, 2-D and 3-D
partial differential equations ('PDE') that have been converted
to 'ODEs' by numerical differencing.
Author: Karline Soetaert [aut] (<https://orcid.org/0000-0003-4603-7100>),
Thomas Petzoldt [aut, cre] (<https://orcid.org/0000-0002-4951-6468>),
R. Woodrow Setzer [aut] (<https://orcid.org/0000-0002-6709-9186>),
Peter N. Brown [ctb] (files ddaspk.f, dvode.f, zvode.f),
George D. Byrne [ctb] (files dvode.f, zvode.f),
Ernst Hairer [ctb] (files radau5.f, radau5a),
Alan C. Hindmarsh [ctb] (files ddaspk.f, dlsode.f, dvode.f, zvode.f,
opdkmain.f, opdka1.f),
Cleve Moler [ctb] (file dlinpck.f),
Linda R. Petzold [ctb] (files ddaspk.f, dlsoda.f),
Youcef Saad [ctb] (file dsparsk.f),
Clement W. Ulrich [ctb] (file ddaspk.f)
Maintainer: Thomas Petzoldt <thomas.petzoldt@tu-dresden.de>
Diff between deSolve versions 1.29 dated 2021-09-22 and 1.30 dated 2021-10-07
DESCRIPTION | 6 +++--- MD5 | 25 +++++++++++++------------ NEWS | 4 ++++ build/partial.rdb |only inst/CITATION | 8 ++------ inst/doc/compiledCode.pdf |binary inst/doc/deSolve.pdf |binary man/daspk.Rd | 2 ++ man/deSolve.Rd | 5 +++-- man/lsoda.Rd | 1 + man/lsodar.Rd | 1 + man/rkMethod.Rd | 2 ++ man/vode.Rd | 3 +++ man/zvode.Rd | 3 +++ 14 files changed, 37 insertions(+), 23 deletions(-)
Title: Data Validation Infrastructure
Description: Declare data validation rules and data quality indicators;
confront data with them and analyze or visualize the results.
The package supports rules that are per-field, in-record,
cross-record or cross-dataset. Rules can be automatically
analyzed for rule type and connectivity. Supports checks implied
by an SDMS DSD file as well. See also Van der Loo
and De Jonge (2018) <doi:10.1002/9781118897126>, Chapter 6
and the JSS paper (2021) <doi:10.18637/jss.v097.i10>.
Author: Mark van der Loo [cre, aut] (<https://orcid.org/0000-0002-9807-4686>),
Edwin de Jonge [aut] (<https://orcid.org/0000-0002-6580-4718>),
Paul Hsieh [ctb]
Maintainer: Mark van der Loo <mark.vanderloo@gmail.com>
Diff between validate versions 1.0.4 dated 2021-04-29 and 1.1.0 dated 2021-10-07
DESCRIPTION | 16 - MD5 | 47 ++- NAMESPACE | 5 NEWS | 12 R/confrontation.R | 16 - R/expressionset.R | 21 + R/parse.R | 116 ++++++--- R/sdmx.R |only R/utils.R | 8 R/validator.R | 1 build/vignette.rds |binary inst/doc/JSS_3483.pdf |binary inst/doc/cookbook.R | 36 ++ inst/doc/cookbook.Rmd | 227 ++++++++++++++++++ inst/doc/cookbook.html | 341 +++++++++++++++++++++------- inst/tinytest/test_confrontation.R | 5 inst/tinytest/test_gh_issue_148.R |only inst/tinytest/test_gh_issue_149.R |only inst/tinytest/test_gh_issue_151.R |only inst/tinytest/test_methods.R | 7 inst/tinytest/test_parse.R | 54 ++++ inst/tinytest/test_sdmx.R |only inst/tinytest/yamltests/duplicate_name.yaml |only man/plot-validation-method.Rd | 2 man/sdmx_codelist.Rd |only man/sdmx_endpoint.Rd |only man/validator_from_dsd.Rd |only vignettes/cookbook.Rmd | 227 ++++++++++++++++++ vignettes/jss3483.pdf |binary 29 files changed, 980 insertions(+), 161 deletions(-)
Title: Smooth Hazard Ratio Curves Taking a Reference Value
Description: Provides flexible hazard ratio curves allowing non-linear
relationships between continuous predictors and survival.
To better understand the effects that each continuous covariate
has on the outcome, results are ex pressed in terms of hazard
ratio curves, taking a specific covariate value as reference.
Confidence bands for these curves are also derived.
Author: Artur Araujo [aut, cre] (<https://orcid.org/0000-0003-1419-4208>),
Luis Meira-Machado [aut] (<https://orcid.org/0000-0002-8577-7665>)
Maintainer: Artur Araujo <artur.stat@gmail.com>
Diff between smoothHR versions 1.0.2 dated 2015-11-09 and 1.0.3 dated 2021-10-07
DESCRIPTION | 45 ++++++++++++++++++++--------- LICENSE |only MD5 | 22 +++++++------- build |only inst/CITATION | 2 - inst/NEWS.Rd | 27 ++++++++++------- man/dfmacox.Rd | 6 ++- man/plot.HR.Rd | 8 +++-- man/predict.HR.Rd | 4 +- man/print.HR.Rd | 9 ++--- man/smoothHR-package.Rd | 74 ++++++++++++++++++++++++++---------------------- man/smoothHR.Rd | 10 +++--- man/whas500.Rd | 63 ++++++++++++++++++++-------------------- 13 files changed, 154 insertions(+), 116 deletions(-)
Title: Statistical Inference in High Dimensional Regression
Description: Inference procedures in the high-dimensional setting for (1) linear functionals and quadratic functionals in linear regression ('Cai et al.' (2019) <arXiv:1904.12891>, 'Guo et al.' (2019) <arXiv:1909.01503>), (2) linear functional in logistic regression ('Guo et al.' <arXiv:2012.07133>), (3) individual treatment effects in linear and logistic regression, (4) single regression coefficient in binary outcome regression.
Author: Prabrisha Rakshit [aut, cre],
Tony Cai [aut],
Zijian Guo [aut]
Maintainer: Prabrisha Rakshit <prabrisha.rakshit@rutgers.edu>
Diff between SIHR versions 0.1.0 dated 2021-06-14 and 0.2.0 dated 2021-10-07
SIHR-0.1.0/SIHR/R/Source_Logistic.R |only SIHR-0.2.0/SIHR/DESCRIPTION | 8 SIHR-0.2.0/SIHR/MD5 | 45 +- SIHR-0.2.0/SIHR/NAMESPACE | 5 SIHR-0.2.0/SIHR/R/GLM_binary.R |only SIHR-0.2.0/SIHR/R/LF_linear.R | 56 +-- SIHR-0.2.0/SIHR/R/LF_logistic.R | 66 ++- SIHR-0.2.0/SIHR/R/Projection_Directions.R | 4 SIHR-0.2.0/SIHR/R/QF.R | 63 +-- SIHR-0.2.0/SIHR/R/Source_GLM.R |only SIHR-0.2.0/SIHR/README.md | 179 +++++++-- SIHR-0.2.0/SIHR/build/partial.rdb |binary SIHR-0.2.0/SIHR/inst/REFERENCES.bib | 8 SIHR-0.2.0/SIHR/inst/doc/README.R | 87 ++++ SIHR-0.2.0/SIHR/inst/doc/README.Rmd | 96 +++++ SIHR-0.2.0/SIHR/inst/doc/README.html | 468 +++++++++++++++----------- SIHR-0.2.0/SIHR/man/Direction_fixedtuning.Rd | 2 SIHR-0.2.0/SIHR/man/Direction_searchtuning.Rd | 2 SIHR-0.2.0/SIHR/man/GLM_binary.Rd |only SIHR-0.2.0/SIHR/man/ITE.Rd | 19 - SIHR-0.2.0/SIHR/man/ITE_Logistic.Rd | 17 SIHR-0.2.0/SIHR/man/LF.Rd | 15 SIHR-0.2.0/SIHR/man/LF_logistic.Rd | 13 SIHR-0.2.0/SIHR/man/QF.Rd | 15 SIHR-0.2.0/SIHR/vignettes/README.Rmd | 96 +++++ SIHR-0.2.0/SIHR/vignettes/REFERENCES.bib |only 26 files changed, 858 insertions(+), 406 deletions(-)
Title: Simple Features for R
Description: Support for simple features, a standardized way to
encode spatial vector data. Binds to 'GDAL' for reading and writing
data, to 'GEOS' for geometrical operations, and to 'PROJ' for
projection conversions and datum transformations. Uses by default the 's2'
package for spherical geometry operations on ellipsoidal (long/lat) coordinates.
Author: Edzer Pebesma [aut, cre] (<https://orcid.org/0000-0001-8049-7069>),
Roger Bivand [ctb] (<https://orcid.org/0000-0003-2392-6140>),
Etienne Racine [ctb],
Michael Sumner [ctb],
Ian Cook [ctb],
Tim Keitt [ctb],
Robin Lovelace [ctb],
Hadley Wickham [ctb],
Jeroen Ooms [ctb] (<https://orcid.org/0000-0002-4035-0289>),
Kirill Müller [ctb],
Thomas Lin Pedersen [ctb],
Dan Baston [ctb],
Dewey Dunnington [ctb] (<https://orcid.org/0000-0002-9415-4582>)
Maintainer: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Diff between sf versions 1.0-2 dated 2021-07-26 and 1.0-3 dated 2021-10-07
DESCRIPTION | 23 MD5 | 98 NAMESPACE | 5 NEWS.md | 16 R/aggregate.R | 4 R/cast_sfc.R | 2 R/geom-measures.R | 4 R/geom-transformers.R | 46 R/grid.R | 132 R/plot.R | 10 R/read.R | 4 R/s2.R | 7 R/sample.R | 2 R/sgbp.R | 9 R/stars.R | 8 R/terra.R | 41 R/tidyverse.R | 8 R/transform.R | 3 R/valid.R | 10 build/vignette.rds |binary configure | 1 configure.ac | 27 inst/doc/sf1.html | 6 inst/doc/sf2.html | 6 inst/doc/sf4.html | 2 inst/doc/sf5.R | 14 inst/doc/sf5.Rmd | 11 inst/doc/sf5.html | 4933 ----------------------------------- inst/doc/sf6.html | 2 inst/doc/sf7.R | 27 inst/doc/sf7.Rmd | 61 inst/doc/sf7.html | 307 +- inst/docker/gdal/Dockerfile | 60 man/geos_measures.Rd | 4 man/geos_unary.Rd | 34 man/s2.Rd | 15 man/st_as_sf.Rd | 7 man/st_as_sfc.Rd | 14 man/st_sample.Rd | 2 src/gdal.cpp | 17 src/geos.cpp | 54 tests/dplyr.Rout.save | 38 tests/empty.Rout.save | 8 tests/read.Rout.save | 9 tests/testthat/test_geos.R | 4 tests/testthat/test_st_cast.R | 13 tests/testthat/test_valid.R |only tests/testthat/test_write.R | 2 tests/testthat/testthat-problems.rds |only vignettes/sf5.Rmd | 11 vignettes/sf7.Rmd | 61 51 files changed, 754 insertions(+), 5428 deletions(-)
Title: Intensive Care Unit Data with R
Description: Focused on (but not exclusive to) data sets hosted on PhysioNet
(<https://physionet.org>), 'ricu' provides utilities for download, setup
and access of intensive care unit (ICU) data sets. In addition to
functions for running arbitrary queries against available data sets, a
system for defining clinical concepts and encoding their representations
in tabular ICU data is presented.
Author: Nicolas Bennett [aut, cre],
Drago Plecko [aut],
Ida-Fong Ukor [aut]
Maintainer: Nicolas Bennett <nicolas.bennett@stat.math.ethz.ch>
Diff between ricu versions 0.5.0 dated 2021-08-18 and 0.5.1 dated 2021-10-07
DESCRIPTION | 6 MD5 | 46 +++--- NAMESPACE | 3 NEWS.md | 6 R/assertions.R | 20 ++ R/callback-cncpt.R | 182 ++++++++++++++++---------- R/callback-itm.R | 54 +++++++ R/callback-scores.R | 16 +- R/callback-sep3.R | 18 +- R/callback-sofa.R | 25 ++- R/concept-utils.R | 7 - R/utils-ts.R | 53 +++++-- inst/doc/jss.Rmd | 2 inst/doc/jss.pdf |binary inst/doc/uom.html | 43 ++---- inst/extdata/config/concept-dict.R | 119 +++++++++-------- inst/extdata/config/concept-dict.json | 231 +++++++++++++++------------------- man/callback_cncpt.Rd | 49 +++---- man/callback_itm.Rd | 5 man/change_id.Rd | 20 +- man/data_env.Rd | 54 +++---- tests/testthat/_snaps/concept.md | 6 tests/testthat/test-concept.R | 8 - vignettes/jss.Rmd | 2 24 files changed, 549 insertions(+), 426 deletions(-)
Title: Implementation of the Radar-Boxplot
Description: Creates the radar-boxplot, a plot that was created by the
author during his Ph.D. in forest resources.
The radar-boxplot is a visualization feature suited for
multivariate classification/clustering. It provides an intuitive
deep understanding of the data.
Author: Caio Hamamura [aut, cre]
Maintainer: Caio Hamamura <caiohamamura@gmail.com>
Diff between radarBoxplot versions 1.0.0 dated 2019-05-17 and 1.0.5 dated 2021-10-07
radarBoxplot-1.0.0/radarBoxplot/inst |only radarBoxplot-1.0.5/radarBoxplot/DESCRIPTION | 18 radarBoxplot-1.0.5/radarBoxplot/LICENSE | 4 radarBoxplot-1.0.5/radarBoxplot/MD5 | 27 radarBoxplot-1.0.5/radarBoxplot/NAMESPACE | 26 radarBoxplot-1.0.5/radarBoxplot/NEWS.md |only radarBoxplot-1.0.5/radarBoxplot/R/data.R | 41 radarBoxplot-1.0.5/radarBoxplot/R/radarBoxplot.R | 1273 ++++++------- radarBoxplot-1.0.5/radarBoxplot/R/utils.R | 378 +-- radarBoxplot-1.0.5/radarBoxplot/README.md | 207 +- radarBoxplot-1.0.5/radarBoxplot/data/winequality_red.rda |binary radarBoxplot-1.0.5/radarBoxplot/data/winequality_white.rda |only radarBoxplot-1.0.5/radarBoxplot/man/figures/Example.png |binary radarBoxplot-1.0.5/radarBoxplot/man/figures/logo.png |only radarBoxplot-1.0.5/radarBoxplot/man/radarBoxplot.Rd | 176 + radarBoxplot-1.0.5/radarBoxplot/man/winequality_red.Rd | 50 radarBoxplot-1.0.5/radarBoxplot/man/winequality_white.Rd |only 17 files changed, 1134 insertions(+), 1066 deletions(-)
Title: Non-Negative Garrote Estimation with Penalized Initial
Estimators
Description: Functions to compute the non-negative garrote estimator as
proposed by Breiman (1995) <https://www.jstor.org/stable/1269730>
with the penalized initial estimators extension as proposed by
Yuan and Lin (2007) <https://www.jstor.org/stable/4623260>.
Author: Anthony Christidis <anthony.christidis@stat.ubc.ca>,
Stefan Van Aelst <stefan.vanaelst@kuleuven.be>,
Ruben Zamar <ruben@stat.ubc.ca>
Maintainer: Anthony Christidis <anthony.christidis@stat.ubc.ca>
Diff between nnGarrote versions 1.0.3 dated 2020-07-06 and 1.0.4 dated 2021-10-07
DESCRIPTION | 12 ++++++------ MD5 | 11 ++++++----- NAMESPACE | 1 + NEWS.md | 3 +++ R/create_folds.R |only R/cv.nnGarrote.R | 8 +++++--- README.md | 2 +- 7 files changed, 22 insertions(+), 15 deletions(-)
Title: Classes and Methods for Seismic Data Analysis
Description: Provides classes and methods for seismic data analysis. The
base classes and methods are inspired by the python code found in
the 'ObsPy' python toolbox <https://github.com/obspy/obspy>. Additional classes and
methods support data returned by web services provided by the 'IRIS DMC'
<http://service.iris.edu/>.
Author: Jonathan Callahan [aut],
Rob Casey [aut],
Gillian Sharer [aut, cre],
Mary Templeton [aut],
Chad Trabant [ctb]
Maintainer: Gillian Sharer <gillian@iris.washington.edu>
Diff between IRISSeismic versions 1.6.2 dated 2021-03-22 and 1.6.3 dated 2021-10-07
DESCRIPTION | 6 MD5 | 22 - R/mseedWrappers.R | 2 R/spectralUtils.R | 2 build/vignette.rds |binary inst/doc/IRISSeismic-intro.Rmd | 4 inst/doc/IRISSeismic-intro.html | 598 +++++++++++++--------------------------- man/IRISSeismic-package.Rd | 5 man/STALTA.Rd | 2 man/crossSpectrum.Rd | 2 src/parseMiniSEED.c | 3 vignettes/IRISSeismic-intro.Rmd | 4 12 files changed, 224 insertions(+), 426 deletions(-)
Title: Convolution of Gamma Distributions
Description: Evaluation for density and distribution function of convolution of gamma
distributions in R. Two related exact methods and one approximate method are
implemented with efficient algorithm and C++ code. A quick guide for choosing
correct method and usage of this package is given in package vignette. For the
detail of methods used in this package, we refer the user to
Mathai(1982)<doi:10.1007/BF02481056>,
Moschopoulos(1984)<doi:10.1007/BF02481123>,
Barnabani(2017)<doi:10.1080/03610918.2014.963612>,
Hu et al.(2020)<doi:10.1007/s00180-019-00924-9>.
Author: Chaoran Hu [aut, cre],
Vladimir Pozdnyakov [ths],
Jun Yan [ths]
Maintainer: Chaoran Hu <chaoran.hu@uconn.edu>
Diff between coga versions 1.1.0 dated 2019-10-08 and 1.1.1 dated 2021-10-07
DESCRIPTION | 14 - MD5 | 16 - NEWS.md | 8 build/vignette.rds |binary configure | 727 +++++++++++++++++++++++++++------------------------- configure.ac | 5 inst/CITATION | 14 - man/coga.Rd | 1 src/RcppExports.cpp | 5 9 files changed, 430 insertions(+), 360 deletions(-)
Title: Bird Point Count Simulator
Description: A highly scientific and utterly addictive
bird point count simulator
to test statistical assumptions, aid survey design,
and have fun while doing it.
The simulations follow time-removal and distance sampling models
based on Matsuoka et al. (2012) <doi:10.1525/auk.2012.11190>,
Solymos et al. (2013) <doi:10.1111/2041-210X.12106>,
and Solymos et al. (2018) <doi:10.1650/CONDOR-18-32.1>,
and sound attenuation experiments by
Yip et al. (2017) <doi:10.1650/CONDOR-16-93.1>.
Author: Peter Solymos [aut, cre] (<https://orcid.org/0000-0001-7337-1740>)
Maintainer: Peter Solymos <solymos@ualberta.ca>
Diff between bSims versions 0.2-1 dated 2019-12-20 and 0.3-0 dated 2021-10-07
bSims-0.2-1/bSims/inst/doc/intro.R |only bSims-0.2-1/bSims/inst/doc/intro.Rmd |only bSims-0.2-1/bSims/inst/doc/intro.html |only bSims-0.2-1/bSims/inst/shiny/rsconnect |only bSims-0.2-1/bSims/vignettes/intro.Rmd |only bSims-0.3-0/bSims/DESCRIPTION | 11 - bSims-0.3-0/bSims/MD5 | 56 +++-- bSims-0.3-0/bSims/NEWS.md | 21 ++ bSims-0.3-0/bSims/R/bsims_animate.R | 9 bSims-0.3-0/bSims/R/bsims_detect.R | 205 +++++++++++++++++---- bSims-0.3-0/bSims/R/bsims_transcribe.R | 42 +++- bSims-0.3-0/bSims/R/dist_fun2.R | 1 bSims-0.3-0/bSims/R/estimate.R | 37 ++- bSims-0.3-0/bSims/R/get_detections.R | 5 bSims-0.3-0/bSims/R/plot.bsims_detections.R | 31 ++- bSims-0.3-0/bSims/R/plot.bsims_detectionss_table.R | 15 + bSims-0.3-0/bSims/R/plot.bsims_events_table.R | 15 + bSims-0.3-0/bSims/R/plot.bsims_transcript.R | 29 ++ bSims-0.3-0/bSims/R/zzz.R | 9 bSims-0.3-0/bSims/build/vignette.rds |binary bSims-0.3-0/bSims/inst/doc/bsims01-intro.R |only bSims-0.3-0/bSims/inst/doc/bsims01-intro.Rmd |only bSims-0.3-0/bSims/inst/doc/bsims01-intro.html |only bSims-0.3-0/bSims/inst/doc/bsims02-layers.R |only bSims-0.3-0/bSims/inst/doc/bsims02-layers.Rmd |only bSims-0.3-0/bSims/inst/doc/bsims02-layers.html |only bSims-0.3-0/bSims/inst/doc/bsims03-workflow.R |only bSims-0.3-0/bSims/inst/doc/bsims03-workflow.Rmd |only bSims-0.3-0/bSims/inst/doc/bsims03-workflow.html |only bSims-0.3-0/bSims/inst/shiny/bsimsH.R | 93 ++++++--- bSims-0.3-0/bSims/inst/shiny/bsimsHER.R | 60 ++++-- bSims-0.3-0/bSims/man/bsims_init.Rd | 35 +++ bSims-0.3-0/bSims/man/plot.Rd | 18 + bSims-0.3-0/bSims/tests/tests.R | 18 + bSims-0.3-0/bSims/vignettes/bsims01-intro.Rmd |only bSims-0.3-0/bSims/vignettes/bsims02-layers.Rmd |only bSims-0.3-0/bSims/vignettes/bsims03-workflow.Rmd |only 37 files changed, 531 insertions(+), 179 deletions(-)
Title: A Gallery of Animations in Statistics and Utilities to Create
Animations
Description: Provides functions for animations in statistics, covering topics
in probability theory, mathematical statistics, multivariate statistics,
non-parametric statistics, sampling survey, linear models, time series,
computational statistics, data mining and machine learning. These functions
may be helpful in teaching statistics and data analysis. Also provided in this
package are a series of functions to save animations to various formats, e.g.
Flash, 'GIF', HTML pages, 'PDF' and videos. 'PDF' animations can be inserted
into 'Sweave' / 'knitr' easily.
Author: Yihui Xie [aut, cre],
Christian Mueller [ctb],
Lijia Yu [ctb],
Weicheng Zhu [ctb]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between animation versions 2.6 dated 2018-12-11 and 2.7 dated 2021-10-07
animation-2.6/animation/NEWS |only animation-2.7/animation/DESCRIPTION | 10 - animation-2.7/animation/MD5 | 205 +++++++++++------------ animation-2.7/animation/NEWS.md |only animation-2.7/animation/R/BM.circle.R | 2 animation-2.7/animation/R/MC.hitormiss.R | 2 animation-2.7/animation/R/MC.samplemean.R | 2 animation-2.7/animation/R/Rosling.bubbles.R | 2 animation-2.7/animation/R/ani.options.R | 17 - animation-2.7/animation/R/ani.record.R | 2 animation-2.7/animation/R/animation-package.R | 13 - animation-2.7/animation/R/bisection.method.R | 2 animation-2.7/animation/R/boot.iid.R | 2 animation-2.7/animation/R/boot.lowess.R | 2 animation-2.7/animation/R/brownian.motion.R | 2 animation-2.7/animation/R/buffon.needle.R | 2 animation-2.7/animation/R/clt.ani.R | 2 animation-2.7/animation/R/conf.int.R | 2 animation-2.7/animation/R/cv.ani.R | 2 animation-2.7/animation/R/cv.nfeaturesLDA.R | 2 animation-2.7/animation/R/flip.coin.R | 2 animation-2.7/animation/R/g.brownian.motion.R | 3 animation-2.7/animation/R/grad.desc.R | 2 animation-2.7/animation/R/im.convert.R | 2 animation-2.7/animation/R/kmeans.ani.R | 2 animation-2.7/animation/R/knn.ani.R | 2 animation-2.7/animation/R/least.squares.R | 2 animation-2.7/animation/R/lln.ani.R | 2 animation-2.7/animation/R/moving.block.R | 2 animation-2.7/animation/R/mwar.ani.R | 2 animation-2.7/animation/R/newton.method.R | 2 animation-2.7/animation/R/pdftk.R | 2 animation-2.7/animation/R/price.ani.R | 2 animation-2.7/animation/R/qpdf.R | 2 animation-2.7/animation/R/quincunx.R | 2 animation-2.7/animation/R/sample.cluster.R | 2 animation-2.7/animation/R/sample.ratio.R | 2 animation-2.7/animation/R/sample.simple.R | 2 animation-2.7/animation/R/sample.strat.R | 2 animation-2.7/animation/R/sample.system.R | 2 animation-2.7/animation/R/saveGIF.R | 5 animation-2.7/animation/R/saveHTML.R | 18 +- animation-2.7/animation/R/saveLatex.R | 2 animation-2.7/animation/R/saveSWF.R | 2 animation-2.7/animation/R/saveVideo.R | 28 +-- animation-2.7/animation/R/sim.qqnorm.R | 2 animation-2.7/animation/R/vi.lilac.chaser.R | 2 animation-2.7/animation/README.md | 9 - animation-2.7/animation/build |only animation-2.7/animation/demo/Xmas.R | 2 animation-2.7/animation/demo/fire.R | 2 animation-2.7/animation/inst/CITATION | 4 animation-2.7/animation/inst/articles/jss725.bib | 2 animation-2.7/animation/man/BM.circle.Rd | 2 animation-2.7/animation/man/CLELAL09.Rd | 6 animation-2.7/animation/man/HuSpeech.Rd | 7 animation-2.7/animation/man/MC.hitormiss.Rd | 13 + animation-2.7/animation/man/MC.samplemean.Rd | 11 - animation-2.7/animation/man/ObamaSpeech.Rd | 4 animation-2.7/animation/man/Rosling.bubbles.Rd | 25 ++ animation-2.7/animation/man/ani.options.Rd | 21 +- animation-2.7/animation/man/ani.record.Rd | 2 animation-2.7/animation/man/animation-package.Rd | 6 animation-2.7/animation/man/bisection.method.Rd | 16 + animation-2.7/animation/man/boot.iid.Rd | 17 + animation-2.7/animation/man/boot.lowess.Rd | 2 animation-2.7/animation/man/brownian.motion.Rd | 2 animation-2.7/animation/man/buffon.needle.Rd | 20 +- animation-2.7/animation/man/clt.ani.Rd | 17 + animation-2.7/animation/man/conf.int.Rd | 2 animation-2.7/animation/man/convert.Rd | 22 +- animation-2.7/animation/man/cv.ani.Rd | 10 - animation-2.7/animation/man/cv.nfeaturesLDA.Rd | 14 + animation-2.7/animation/man/ecol.death.sim.Rd | 15 + animation-2.7/animation/man/flip.coin.Rd | 15 + animation-2.7/animation/man/g.brownian.motion.Rd | 16 + animation-2.7/animation/man/grad.desc.Rd | 18 +- animation-2.7/animation/man/iatemp.Rd | 6 animation-2.7/animation/man/kmeans.ani.Rd | 11 - animation-2.7/animation/man/knn.ani.Rd | 18 +- animation-2.7/animation/man/least.squares.Rd | 23 ++ animation-2.7/animation/man/lln.ani.Rd | 13 + animation-2.7/animation/man/moving.block.Rd | 2 animation-2.7/animation/man/mwar.ani.Rd | 14 + animation-2.7/animation/man/newton.method.Rd | 18 +- animation-2.7/animation/man/pageview.Rd | 10 - animation-2.7/animation/man/pdftk.Rd | 4 animation-2.7/animation/man/pollen.Rd | 6 animation-2.7/animation/man/price.ani.Rd | 16 + animation-2.7/animation/man/qpdf.Rd | 4 animation-2.7/animation/man/quincunx.Rd | 22 +- animation-2.7/animation/man/sample.cluster.Rd | 11 - animation-2.7/animation/man/sample.ratio.Rd | 17 + animation-2.7/animation/man/sample.simple.Rd | 11 - animation-2.7/animation/man/sample.strat.Rd | 12 - animation-2.7/animation/man/sample.system.Rd | 11 - animation-2.7/animation/man/saveGIF.Rd | 37 +++- animation-2.7/animation/man/saveHTML.Rd | 23 +- animation-2.7/animation/man/saveLatex.Rd | 32 ++- animation-2.7/animation/man/saveSWF.Rd | 19 +- animation-2.7/animation/man/saveVideo.Rd | 24 +- animation-2.7/animation/man/sim.qqnorm.Rd | 2 animation-2.7/animation/man/vanke1127.Rd | 6 animation-2.7/animation/man/vi.grid.illusion.Rd | 10 - animation-2.7/animation/man/vi.lilac.chaser.Rd | 2 105 files changed, 688 insertions(+), 371 deletions(-)
Title: Spherical Principal Curves
Description: Fitting dimension reduction methods to data lying on two-dimensional sphere.
This package provides principal geodesic analysis, principal circle, principal curves
proposed by Hauberg, and spherical principal curves. Moreover, it offers the method of locally
defined principal geodesics which is underway. The detailed procedures
are described in Lee, J., Kim, J.-H. and Oh, H.-S. (2021) <doi:10.1109/TPAMI.2020.3025327>.
Also see Kim, J.-H., Lee, J. and Oh, H.-S. (2020) <arXiv:2003.02578>.
Author: Jongmin Lee [aut, cre],
Jang-Hyun Kim [ctb],
Hee-Seok Oh [aut]
Maintainer: Jongmin Lee <jongminlee9218@gmail.com>
Diff between spherepc versions 0.1.5 dated 2021-10-06 and 0.1.7 dated 2021-10-07
DESCRIPTION | 12 ++++++------ MD5 | 12 ++++++------ R/spherepc.R | 34 +++++++++++++++++++++------------- man/PrincipalCircle.Rd | 4 ++-- man/Proj.Hauberg.Rd | 2 ++ man/SPC.Hauberg.Rd | 2 ++ man/SPC.Rd | 5 +++-- 7 files changed, 42 insertions(+), 29 deletions(-)
Title: Simulation of Ecological (and Other) Dynamic Systems
Description: An object oriented framework to simulate
ecological (and other) dynamic systems. It can be used for
differential equations, individual-based (or agent-based) and other
models as well. It supports structuring of simulation scenarios (to avoid copy
and paste) and aims to improve readability and re-usability of code.
Author: Thomas Petzoldt [aut, cre] (<https://orcid.org/0000-0002-4951-6468>)
Maintainer: Thomas Petzoldt <thomas.petzoldt@tu-dresden.de>
Diff between simecol versions 0.8-13 dated 2019-07-15 and 0.8-14 dated 2021-10-07
DESCRIPTION | 6 MD5 | 36 - build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 8 inst/NEWS | 3 inst/doc/a-simecol-introduction.R | 622 +++++++++--------- inst/doc/a-simecol-introduction.Rnw | 22 inst/doc/a-simecol-introduction.pdf |binary inst/doc/b-simecol-howtos.R | 986 ++++++++++++++--------------- inst/doc/b-simecol-howtos.Rnw | 9 inst/doc/b-simecol-howtos.pdf |binary inst/doc/examples/dynload/simecol_clotka.R | 2 inst/doc/examples/dynload/test_clotka.R | 2 man/fitOdeModel.Rd | 2 man/p.constrain.Rd | 2 man/pcuseries.Rd | 4 vignettes/a-simecol-introduction.Rnw | 22 vignettes/b-simecol-howtos.Rnw | 9 19 files changed, 868 insertions(+), 867 deletions(-)
Title: Retrieval, Analysis and Visualization of Air Traffic Data
Description: Provides functionalities and data structures to retrieve, analyze and visualize aviation
data. It includes a client interface to the 'OpenSky' API <https://opensky-network.org>. It allows
retrieval of flight information, as well as aircraft state vectors.
Author: Rafael Ayala, Daniel Ayala, David Ruiz, Aleix Sellés, Lara Sellés Vidal
Maintainer: Rafael Ayala <rafael.ayala@oist.jp>
Diff between openSkies versions 1.1.4 dated 2021-08-23 and 1.1.5 dated 2021-10-07
DESCRIPTION | 8 +-- MD5 | 37 +++++++-------- NAMESPACE | 1 NEWS | 12 ++++ R/openSkies_checkInputFunctions.R | 10 ++++ R/openSkies_classDefinitions.R | 40 ++++++++++++---- R/openSkies_clusteringFunctions.R | 16 ++---- R/openSkies_formatResponseFunctions.R | 4 - R/openSkies_getFlightsFunctions.R | 8 +-- R/openSkies_getMetadataFunctions.R | 50 +++++++++++++++++++- R/openSkies_getStateVectorsFunctions.R | 70 +++++++++++++++++++++++++--- R/openSkies_otherSupportFunctions.R | 51 +++++++++++++++++++-- R/openSkies_plottingFunctions.R | 11 +++- inst/doc/openSkies.html | 26 +++++----- man/getIntervalStateVectors.Rd | 80 +++++++++++++++++++++++++++++++-- man/getOSNCoverage.Rd |only man/getVectorSetFeatures.Rd | 15 +++--- man/getVectorSetListFeatures.Rd | 18 ++++--- man/openSkiesFlight.Rd | 9 ++- man/openSkiesStateVectorSet.Rd | 17 ++++++- 20 files changed, 386 insertions(+), 97 deletions(-)
Title: Computing Variances and Covariances, Visualization and Missing
Data Solution for Multivariate Meta-Analysis
Description: Collection of functions to compute covariances for different effect sizes, data visualization, and single and multiple imputation for missing data. Effect sizes include correlation (r), mean difference (MD), standardized mean difference (SMD), log odds ratio (logOR), log risk ratio (logRR), and risk difference (RD).
Author: Min Lu <m.lu6@umiami.edu>
Maintainer: Min Lu <m.lu6@umiami.edu>
Diff between metavcov versions 2.1 dated 2021-08-21 and 2.1.1 dated 2021-10-07
DESCRIPTION | 15 +-- MD5 | 69 +++++++------ NAMESPACE | 21 +++- R/lgOR.vcov.R | 41 ++++---- R/lgRR.vcov.R | 41 ++++---- R/md.vcov.R | 36 +++---- R/metafixed.R |only R/metami.R |only R/mix.vcov.R | 240 +++++++++++++++++++++++++++++++++++------------- R/plotCI.R |only R/r.vcov.R | 148 ++++++++++++++++------------- R/rd.vcov.R | 38 +++---- R/smd.vcov.R | 84 +++++++++++----- data/Craft2003.rda |binary inst/CITATION | 10 +- inst/NEWS |only man/Craft2003.Rd | 16 +-- man/Geeganage2010.Rd | 36 +++---- man/lgOR.vcov.Rd | 73 +++++++++----- man/lgRR.vcov.Rd | 68 +++++++++---- man/lgor_lgrr.Rd | 41 ++++---- man/lgor_rd.Rd | 40 ++++---- man/lgrr_rd.Rd | 40 ++++---- man/md.vcov.Rd | 61 ++++++++---- man/md_lgor.Rd | 37 ++++--- man/md_lgrr.Rd | 37 ++++--- man/md_rd.Rd | 37 ++++--- man/md_smd.Rd | 40 ++++---- man/metafixed.Rd |only man/metami.Rd |only man/metavcov-package.Rd | 127 ++++++++++++++++++++++--- man/mix.vcov.Rd | 110 +++++++++++++--------- man/plotCI.Rd |only man/r.vcov.Rd | 126 ++++++++++++++++--------- man/rd.vcov.Rd | 66 ++++++++----- man/smd.vcov.Rd | 71 ++++++++++---- man/smd_lgor.Rd | 43 ++++---- man/smd_lgrr.Rd | 43 ++++---- man/smd_rd.Rd | 41 ++++---- 39 files changed, 1203 insertions(+), 693 deletions(-)
Title: Exact Sequential Analysis for Poisson and Binomial Data
Description: Functions to calculate exact critical values, statistical power, expected time to signal, and required sample sizes for performing exact sequential analysis. All these calculations can be done for either Poisson or binomial data, for continuous or group sequential analyses, and for different types of rejection boundaries. In case of group sequential analyses, the group sizes do not have to be specified in advance and the alpha spending can be arbitrarily settled.
Author: Ivair Ramos Silva and Martin Kulldorff
Maintainer: Ivair Ramos Silva <ivair@ufop.edu.br>
Diff between Sequential versions 4.0 dated 2021-09-30 and 4.1 dated 2021-10-07
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/SampleSize.Poisson.R | 12 ++++++------ man/ConfidenceInterval.Binomial.Rd | 4 +++- man/Sequential-package.Rd | 8 ++++++-- 5 files changed, 23 insertions(+), 17 deletions(-)
Title: Ensemble Empirical Mode Decomposition (EEMD) and Its Complete
Variant (CEEMDAN)
Description: An R interface for libeemd (Luukko, Helske, Räsänen, 2016) <doi:10.1007/s00180-015-0603-9>,
a C library of highly efficient parallelizable functions for performing the ensemble empirical mode decomposition (EEMD),
its complete variant (CEEMDAN), the regular empirical mode decomposition (EMD), and bivariate EMD (BEMD).
Due to the possible portability issues CRAN version no longer supports OpenMP, you can install OpenMP-supported version
from GitHub: <https://github.com/helske/Rlibeemd/>.
Author: Jouni Helske [aut, cre] (R interface,
<https://orcid.org/0000-0001-7130-793X>),
Perttu Luukko [aut] (Original libeemd C library,
<https://orcid.org/0000-0003-3786-9685>)
Maintainer: Jouni Helske <jouni.helske@iki.fi>
Diff between Rlibeemd versions 1.4.1 dated 2018-12-19 and 1.4.2 dated 2021-10-07
.aspell/defaults.R | 10 +- ChangeLog | 13 ++- DESCRIPTION | 10 +- MD5 | 52 ++++++------ NAMESPACE | 26 +++--- R/bemd.R | 164 ++++++++++++++++++++-------------------- R/ecg.R | 3 R/zzz.R | 14 +++ cleanup | 3 configure | 37 ++++++--- configure.ac | 12 +- inst/CITATION | 60 +++++++------- man/ECG.Rd | 51 ++++++------ man/Rlibeemd.Rd | 57 ++++++-------- man/bemd.Rd | 138 +++++++++++++++++----------------- man/ceemdan.Rd | 169 +++++++++++++++++++++--------------------- man/eemd.Rd | 160 ++++++++++++++++++++------------------- man/emd.Rd | 90 +++++++++++----------- man/extrema.Rd | 98 ++++++++++++------------ man/float.Rd | 68 ++++++++-------- man/nIMFs.Rd | 40 ++++----- src/Makevars.in | 9 -- src/Makevars.win | 8 - src/RcppExports.cpp | 5 + tests/test-all.R | 4 tests/testthat/test-bemd.R | 134 ++++++++++++++++----------------- tests/testthat/test-ceemdan.R | 118 ++++++++++++++--------------- tests/testthat/test-eemd.R | 96 +++++++++++------------ 28 files changed, 852 insertions(+), 797 deletions(-)
Title: Qualitative Validation Methods
Description: Qualitative methods for the validation of dynamic models.
It contains (i) an orthogonal set of deviance measures for absolute,
relative and ordinal scale and (ii) approaches accounting for time
shifts. The first approach transforms time to take time delays and speed
differences into account. The second divides the time series into
interval units according to their main features and finds the longest
common subsequence (LCS) using a dynamic programming algorithm.
Author: K. Gerald van den Boogaart [aut, ths]
(<https://orcid.org/0000-0003-4646-943X>),
Stefanie Rost [aut],
Thomas Petzoldt [aut, ths, cre]
(<https://orcid.org/0000-0002-4951-6468>)
Maintainer: Thomas Petzoldt <thomas.petzoldt@tu-dresden.de>
Diff between qualV versions 0.3-3 dated 2017-06-12 and 0.3-4 dated 2021-10-07
DESCRIPTION | 20 ++++++++++++-------- MD5 | 21 +++++++++++---------- R/LCS.R | 25 ++++++++++++++++++------- build |only data/phyto.rda |binary inst/CITATION | 8 ++------ inst/NEWS | 4 ++++ man/phyto.Rd | 3 +-- man/qualV.Rd | 2 +- man/quantV.Rd | 2 +- man/qvalLCS.Rd | 2 +- src/R_init_qualV.c | 18 ++++-------------- 12 files changed, 55 insertions(+), 50 deletions(-)
Title: Convert Data among QTL Mapping Packages
Description: Functions to convert data structures among the 'qtl2', 'qtl', and 'DOQTL' packages for mapping quantitative trait loci (QTL).
Author: Karl W Broman [aut, cre] (<https://orcid.org/0000-0002-4914-6671>)
Maintainer: Karl W Broman <broman@wisc.edu>
Diff between qtl2convert versions 0.24 dated 2021-04-29 and 0.26 dated 2021-10-07
DESCRIPTION | 10 +++++----- MD5 | 8 +++++--- NAMESPACE | 1 + NEWS.md | 8 ++++++++ R/cross2_ril_to_genril.R |only man/cross2_ril_to_genril.Rd |only 6 files changed, 19 insertions(+), 8 deletions(-)
Title: Multivariate Data Handling in Ecology and Biogeography
Description: A framework package aimed to provide standardized computational environment for specialist work via object classes to represent the data coded by samples, taxa and segments (i.e. subpopulations, repeated measures). It supports easy processing of the data along with cross tabulation and relational data tables for samples and taxa. An object of class `mefa' is a project specific compendium of the data and can be easily used in further analyses. Methods are provided for extraction, aggregation, conversion, plotting, summary and reporting of `mefa' objects. Reports can be generated in plain text or LaTeX format. Vignette contains worked examples.
Author: Peter Solymos
Maintainer: Peter Solymos <solymos@ualberta.ca>
Diff between mefa versions 3.2-7 dated 2016-01-11 and 3.2-8 dated 2021-10-07
mefa-3.2-7/mefa/build/vignette.rds |only mefa-3.2-7/mefa/inst/doc |only mefa-3.2-7/mefa/vignettes |only mefa-3.2-8/mefa/DESCRIPTION | 9 mefa-3.2-8/mefa/MD5 | 209 +++---- mefa-3.2-8/mefa/NAMESPACE | 180 +++--- mefa-3.2-8/mefa/R/aggregate.mefa.R | 114 +-- mefa-3.2-8/mefa/R/aoplot.R | 2 mefa-3.2-8/mefa/R/aoplot.default.R | 36 - mefa-3.2-8/mefa/R/as.array.mefa.R | 18 mefa-3.2-8/mefa/R/as.data.frame.mefa.R | 24 mefa-3.2-8/mefa/R/as.data.frame.stcs.R | 22 mefa-3.2-8/mefa/R/as.list.mefa.R | 20 mefa-3.2-8/mefa/R/as.matrix.mefa.R | 12 mefa-3.2-8/mefa/R/as.mefa.R | 12 mefa-3.2-8/mefa/R/as.mefa.array.R | 36 - mefa-3.2-8/mefa/R/as.mefa.default.R | 38 - mefa-3.2-8/mefa/R/as.mefa.list.R | 40 - mefa-3.2-8/mefa/R/as.stcs.R | 12 mefa-3.2-8/mefa/R/as.stcs.default.R | 6 mefa-3.2-8/mefa/R/boxplot.mefa.R | 68 +- mefa-3.2-8/mefa/R/boxplot.stcs.R | 12 mefa-3.2-8/mefa/R/cdrop.R | 38 - mefa-3.2-8/mefa/R/coercionMethodsForMefa4.R | 110 +-- mefa-3.2-8/mefa/R/dim.mefa.R | 16 mefa-3.2-8/mefa/R/dimnames.mefa.R | 22 mefa-3.2-8/mefa/R/extract.mefa.R | 182 +++--- mefa-3.2-8/mefa/R/fill.na.R | 46 - mefa-3.2-8/mefa/R/image.dist.R | 60 +- mefa-3.2-8/mefa/R/image.mefa.R | 90 +-- mefa-3.2-8/mefa/R/image.stcs.R | 14 mefa-3.2-8/mefa/R/is.dist.R | 6 mefa-3.2-8/mefa/R/is.mefa.R | 12 mefa-3.2-8/mefa/R/is.stcs.R | 16 mefa-3.2-8/mefa/R/label.R | 28 mefa-3.2-8/mefa/R/mat2list.R | 26 mefa-3.2-8/mefa/R/mefa.R | 132 ++-- mefa-3.2-8/mefa/R/mefaCheck.R | 116 +-- mefa-3.2-8/mefa/R/mefaCompare.R | 90 +-- mefa-3.2-8/mefa/R/mefaCrosstab.R | 76 +- mefa-3.2-8/mefa/R/mefaNestedless.R | 40 - mefa-3.2-8/mefa/R/mefaTables.R | 112 +-- mefa-3.2-8/mefa/R/mefadocs.R | 32 - mefa-3.2-8/mefa/R/mefalogo.R | 82 +- mefa-3.2-8/mefa/R/mefaweb.R | 12 mefa-3.2-8/mefa/R/melt.R | 12 mefa-3.2-8/mefa/R/melt.mefa.R | 230 +++---- mefa-3.2-8/mefa/R/mfill.R | 4 mefa-3.2-8/mefa/R/msr.R | 28 mefa-3.2-8/mefa/R/mss.R | 36 - mefa-3.2-8/mefa/R/mtr.R | 34 - mefa-3.2-8/mefa/R/mts.R | 36 - mefa-3.2-8/mefa/R/plot.mefa.R | 152 ++--- mefa-3.2-8/mefa/R/plot.stcs.R | 12 mefa-3.2-8/mefa/R/print.mefa.R | 58 - mefa-3.2-8/mefa/R/print.summary.mefa.R | 58 - mefa-3.2-8/mefa/R/qvector.R | 22 mefa-3.2-8/mefa/R/rdrop.R | 38 - mefa-3.2-8/mefa/R/rep.data.frame.R | 6 mefa-3.2-8/mefa/R/report.R | 12 mefa-3.2-8/mefa/R/report.mefa.R | 538 +++++++++--------- mefa-3.2-8/mefa/R/samp.R | 4 mefa-3.2-8/mefa/R/samp.default.R | 20 mefa-3.2-8/mefa/R/segm.R | 4 mefa-3.2-8/mefa/R/segm.default.R | 20 mefa-3.2-8/mefa/R/stack.dist.R | 46 - mefa-3.2-8/mefa/R/stcs.R | 172 ++--- mefa-3.2-8/mefa/R/summary.mefa.R | 46 - mefa-3.2-8/mefa/R/summary.stcs.R | 18 mefa-3.2-8/mefa/R/taxa.R | 4 mefa-3.2-8/mefa/R/taxa.default.R | 18 mefa-3.2-8/mefa/R/vec2dist.R | 24 mefa-3.2-8/mefa/R/xtab.R | 4 mefa-3.2-8/mefa/R/xtab.default.R | 10 mefa-3.2-8/mefa/R/zzz.R | 22 mefa-3.2-8/mefa/build/partial.rdb |only mefa-3.2-8/mefa/demo/00Index | 2 mefa-3.2-8/mefa/demo/mefa.R | 488 ++++++++-------- mefa-3.2-8/mefa/inst/CITATION | 37 - mefa-3.2-8/mefa/inst/ChangeLog | 836 ++++++++++++++-------------- mefa-3.2-8/mefa/inst/SampleReport | 80 +- mefa-3.2-8/mefa/inst/tmp |only mefa-3.2-8/mefa/man/aggregate.mefa.Rd | 172 ++--- mefa-3.2-8/mefa/man/aoplot.Rd | 92 +-- mefa-3.2-8/mefa/man/as.mefa.Rd | 204 +++--- mefa-3.2-8/mefa/man/dolina.Rd | 118 +-- mefa-3.2-8/mefa/man/fill.na.Rd | 86 +- mefa-3.2-8/mefa/man/image.dist.Rd | 83 +- mefa-3.2-8/mefa/man/label.Rd | 90 +-- mefa-3.2-8/mefa/man/mat2list.Rd | 138 ++-- mefa-3.2-8/mefa/man/mefa.Rd | 298 ++++----- mefa-3.2-8/mefa/man/mefaCheck.Rd | 86 +- mefa-3.2-8/mefa/man/mefaCrosstab.Rd | 94 +-- mefa-3.2-8/mefa/man/mefaNestedless.Rd | 70 +- mefa-3.2-8/mefa/man/mefaTables.Rd | 96 +-- mefa-3.2-8/mefa/man/mefadocs.Rd | 50 - mefa-3.2-8/mefa/man/mefalogo.Rd | 84 +- mefa-3.2-8/mefa/man/mefaweb.Rd | 58 - mefa-3.2-8/mefa/man/melt.mefa.Rd | 137 ++-- mefa-3.2-8/mefa/man/plot.mefa.Rd | 212 +++---- mefa-3.2-8/mefa/man/qvector.Rd | 86 +- mefa-3.2-8/mefa/man/rep.data.frame.Rd | 80 +- mefa-3.2-8/mefa/man/report.mefa.Rd | 154 ++--- mefa-3.2-8/mefa/man/stack.dist.Rd | 136 ++-- mefa-3.2-8/mefa/man/stcs.Rd | 174 ++--- mefa-3.2-8/mefa/tests/tests.R | 4 106 files changed, 4078 insertions(+), 4083 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-03-05 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-04-16 1.3.3
2021-01-14 1.3.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-09-02 0.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-09-23 0.0.1
2021-09-23 0.0.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-09-11 1.0.1
2020-09-10 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-09-22 1.0.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-05-15 2.2.1
2018-12-03 2.2.0
2016-06-28 2.1.3
2015-10-30 2.1
2015-03-10 2.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-05-28 1.2.6
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-09-22 1.1.4
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-09-22 0.2.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-02-12 0.2-16
2014-04-14 0.2-15
2013-12-17 0.2-14
2013-12-16 0.2-13
2012-07-02 0.2-12
Title: Global Surface Summary of the Day ('GSOD') Weather Data Client
Description: Provides automated downloading, parsing, cleaning, unit conversion
and formatting of Global Surface Summary of the Day ('GSOD') weather data
from the from the USA National Centers for Environmental Information
('NCEI'). Units are converted from from United States Customary System
('USCS') units to International System of Units ('SI'). Stations may be
individually checked for number of missing days defined by the user, where
stations with too many missing observations are omitted. Only stations with
valid reported latitude and longitude values are permitted in the final
data. Additional useful elements, saturation vapour pressure ('es'), actual
vapour pressure ('ea') and relative humidity ('RH') are calculated from the
original data using the improved August-Roche-Magnus approximation (Alduchov
& Eskridge 1996) and included in the final data set. The resulting metadata
include station identification information, country, state, latitude,
longitude, elevation, weather observations and associated flags. For
information on the 'GSOD' data from 'NCEI', please see the 'GSOD'
'readme.txt' file available from,
<https://www1.ncdc.noaa.gov/pub/data/gsod/readme.txt>.
Author: Adam H. Sparks [aut, cre] (<https://orcid.org/0000-0002-0061-8359>),
Tomislav Hengl [aut] (<https://orcid.org/0000-0002-9921-5129>),
Andrew Nelson [aut] (<https://orcid.org/0000-0002-7249-3778>),
Hugh Parsonage [cph, ctb] (<https://orcid.org/0000-0003-4055-0835>),
Taras Kaduk [ctb] (Suggestion for handling bulk station downloads more
efficiently),
Gwenael Giboire [ctb] (Several bug reports in early versions and
testing feedback),
Łukasz Pawlik [ctb] (Reported bug in windspeed conversion calculation),
Ross Darnell [ctb] (Reported bug in 'Windows OS' versions causing
'GSOD' data untarring to fail,
<https://orcid.org/0000-0002-7973-6322>),
Tyler Widdison [ctb] (Reported bug where `nearest_stations()` did not
return stations in order of nearest to farthest)
Maintainer: Adam H. Sparks <adamhsparks@gmail.com>
Diff between GSODR versions 3.1.2 dated 2021-07-04 and 3.1.4 dated 2021-10-07
DESCRIPTION | 8 ++++---- MD5 | 36 ++++++++++++++++++------------------ NEWS.md | 13 +++++++++++++ R/get_GSOD.R | 18 +++++++++--------- R/get_inventory.R | 2 +- R/nearest_stations.R | 10 +++++----- R/reformat_GSOD.R | 6 +++--- R/update_station_list.R | 12 ++++++------ build/vignette.rds |binary inst/extdata/isd_diff.rda |binary inst/extdata/isd_history.rda |binary man/GSODR-package.Rd | 28 ++++------------------------ man/get_GSOD.Rd | 18 +++++++++--------- man/get_inventory.Rd | 2 +- man/nearest_stations.Rd | 10 +++++----- man/reformat_GSOD.Rd | 4 ++-- man/update_station_list.Rd | 12 ++++++------ tests/testthat/test-get_inventory.R | 1 + tests/testthat/test-process_csv.R | 2 +- 19 files changed, 88 insertions(+), 94 deletions(-)
Title: Electronic Health Record (EHR) Data Processing and Analysis Tool
Description: Process and analyze electronic health record (EHR) data. The 'EHR'
package provides modules to perform diverse medication-related studies using
data from EHR databases. Especially, the package includes modules to perform
pharmacokinetic/pharmacodynamic (PK/PD) analyses using EHRs, as outlined in
Choi, Beck, McNeer, Weeks, Williams, James, Niu, Abou-Khalil, Birdwell, Roden,
Stein, Bejan, Denny, and Van Driest (2020) <doi:10.1002/cpt.1787>. Additional
modules will be added in future. In addition, this package provides various
functions useful to perform Phenome Wide Association Study (PheWAS) to explore
associations between drug exposure and phenotypes obtained from EHR data, as
outlined in Choi, Carroll, Beck, Mosley, Roden, Denny, and Van Driest (2018)
<doi:10.1093/bioinformatics/bty306>.
Author: Leena Choi [aut, cre] (<https://orcid.org/0000-0002-2544-7090>),
Cole Beck [aut] (<https://orcid.org/0000-0002-6849-6255>),
Hannah Weeks [aut] (<https://orcid.org/0000-0002-0262-6790>),
Elizabeth McNeer [aut],
Nathan James [aut] (<https://orcid.org/0000-0001-7079-9151>),
Michael Williams [aut]
Maintainer: Leena Choi <naturechoi@gmail.com>
Diff between EHR versions 0.4-1 dated 2021-06-09 and 0.4-4 dated 2021-10-07
EHR-0.4-1/EHR/inst/doc/ehr_vignette_01_mxr.html |only EHR-0.4-1/EHR/inst/doc/ehr_vignette_02_str.html |only EHR-0.4-1/EHR/inst/doc/ehr_vignette_03_DoseBuilding.html |only EHR-0.4-1/EHR/inst/doc/ehr_vignette_04_Build_PK_Oral.html |only EHR-0.4-4/EHR/DESCRIPTION | 9 EHR-0.4-4/EHR/MD5 | 86 - EHR-0.4-4/EHR/R/modDemo.R | 4 EHR-0.4-4/EHR/R/modDrugLevel.R | 34 EHR-0.4-4/EHR/R/modLabs.R | 4 EHR-0.4-4/EHR/R/modMedStr1.R | 282 +++-- EHR-0.4-4/EHR/R/modMedStr2.R | 44 EHR-0.4-4/EHR/R/modPK.R | 359 +++++- EHR-0.4-4/EHR/R/pkDosingInterval.R | 14 EHR-0.4-4/EHR/R/utilsId.R | 25 EHR-0.4-4/EHR/R/utilsMod.R | 514 ++++++---- EHR-0.4-4/EHR/R/utilsPk.R | 132 -- EHR-0.4-4/EHR/build/vignette.rds |binary EHR-0.4-4/EHR/inst/doc/ehr_vignette_01_mxr.R | 11 EHR-0.4-4/EHR/inst/doc/ehr_vignette_01_mxr.Rmd | 29 EHR-0.4-4/EHR/inst/doc/ehr_vignette_01_mxr.pdf |only EHR-0.4-4/EHR/inst/doc/ehr_vignette_02_str.R | 257 ++--- EHR-0.4-4/EHR/inst/doc/ehr_vignette_02_str.Rmd | 345 ++++-- EHR-0.4-4/EHR/inst/doc/ehr_vignette_02_str.pdf |only EHR-0.4-4/EHR/inst/doc/ehr_vignette_03_DoseBuilding.R | 56 + EHR-0.4-4/EHR/inst/doc/ehr_vignette_03_DoseBuilding.Rmd | 68 + EHR-0.4-4/EHR/inst/doc/ehr_vignette_03_DoseBuilding.pdf |only EHR-0.4-4/EHR/inst/doc/ehr_vignette_04_Build_PK_Oral.Rmd | 44 EHR-0.4-4/EHR/inst/doc/ehr_vignette_04_Build_PK_Oral.pdf |only EHR-0.4-4/EHR/inst/examples/str_ex1/Demographics_DATA_simple.csv | 26 EHR-0.4-4/EHR/inst/mxr_tune/tune_note1.ann | 9 EHR-0.4-4/EHR/inst/mxr_tune/tune_note1.txt | 4 EHR-0.4-4/EHR/inst/mxr_tune/tune_note2.ann | 14 EHR-0.4-4/EHR/inst/mxr_tune/tune_note2.txt | 4 EHR-0.4-4/EHR/inst/mxr_tune/tune_note3.ann | 7 EHR-0.4-4/EHR/man/EHR-package.Rd | 7 EHR-0.4-4/EHR/man/mod-internal.Rd | 6 EHR-0.4-4/EHR/man/pk-internal.Rd | 6 EHR-0.4-4/EHR/man/run_Build_PK_IV.Rd | 96 + EHR-0.4-4/EHR/man/run_Build_PK_Oral.Rd | 2 EHR-0.4-4/EHR/man/run_Demo.Rd | 2 EHR-0.4-4/EHR/man/run_DrugLevel.Rd | 32 EHR-0.4-4/EHR/man/run_Labs.Rd | 2 EHR-0.4-4/EHR/man/run_MedStrI.Rd | 111 +- EHR-0.4-4/EHR/man/run_MedStrII.Rd | 21 EHR-0.4-4/EHR/vignettes/ehr_vignette_01_mxr.Rmd | 29 EHR-0.4-4/EHR/vignettes/ehr_vignette_02_str.Rmd | 345 ++++-- EHR-0.4-4/EHR/vignettes/ehr_vignette_03_DoseBuilding.Rmd | 68 + EHR-0.4-4/EHR/vignettes/ehr_vignette_04_Build_PK_Oral.Rmd | 44 48 files changed, 2051 insertions(+), 1101 deletions(-)