Title: An Implementation of Matrix Mathematics
Description: An implementation of matrix mathematics wherein operations are performed "by name."
Author: Matthew Heun [aut, cre] (<https://orcid.org/0000-0002-7438-214X>)
Maintainer: Matthew Heun <matthew.heun@me.com>
Diff between matsbyname versions 0.4.24 dated 2021-10-02 and 0.4.25 dated 2021-10-12
DESCRIPTION | 8 +++--- MD5 | 26 ++++++++++---------- NAMESPACE | 3 ++ NEWS.md | 10 +++++++ R/Unary.R | 13 +++++----- R/notation.R | 33 ++++++++++++++++++++++++-- README.md | 2 - inst/CITATION | 4 +-- inst/doc/about-vector-arguments.html | 4 +-- inst/doc/applybyname-vignette.html | 4 +-- inst/doc/matsbyname.html | 4 +-- man/aggregate_byname.Rd | 13 +++++----- man/row-col-notation.Rd | 18 ++++++++++++-- tests/testthat/test-notation.R | 44 +++++++++++++++++++++++++++++++++++ 14 files changed, 143 insertions(+), 43 deletions(-)
Title: Fast Statistical Hypothesis Tests on Rows and Columns of
Matrices
Description: Functions to perform fast statistical hypothesis tests on rows/columns of matrices.
The main goals are: 1) speed via vectorization, 2) output that is detailed and easy to use,
3) compatibility with tests implemented in R (like those available in the 'stats' package).
Author: Karolis Koncevičius [aut, cre]
Maintainer: Karolis Koncevičius <karolis.koncevicius@gmail.com>
Diff between matrixTests versions 0.1.9 dated 2020-05-01 and 0.1.9.1 dated 2021-10-12
DESCRIPTION | 15 +++++++-------- MD5 | 10 +++++----- R/waerden.R | 2 +- inst/benchmarks/row_waerden.R | 4 ++-- man/waerden.Rd | 2 +- tests/testthat/test-correct-waerden.R | 2 +- 6 files changed, 17 insertions(+), 18 deletions(-)
Title: Sustainable Transport Planning
Description: Tools for transport planning with an emphasis on spatial transport
data and non-motorized modes. Enables common transport planning tasks including:
downloading and cleaning transport datasets; creating geographic "desire lines"
from origin-destination (OD) data; route assignment, locally and via
interfaces to routing services such as <https://cyclestreets.net/> and
calculation of route segment attributes such as bearing.
The package implements the 'travel flow aggregration' method
described in Morgan and Lovelace (2020) <doi:10.1177/2399808320942779>.
Further information on the package's aim and scope can be found
in the vignettes and in a paper in the R Journal
(Lovelace and Ellison 2018) <doi:10.32614/RJ-2018-053>.
Author: Robin Lovelace [aut, cre] (<https://orcid.org/0000-0001-5679-6536>),
Richard Ellison [aut],
Malcolm Morgan [aut] (<https://orcid.org/0000-0002-9488-9183>),
Barry Rowlingson [ctb],
Nick Bearman [ctb],
Nikolai Berkoff [ctb],
Scott Chamberlain [rev] (Scott reviewed the package for rOpenSci, see
https://github.com/ropensci/onboarding/issues/10),
Mark Padgham [ctb],
Andrea Gilardi [ctb] (<https://orcid.org/0000-0002-9424-7439>)
Maintainer: Robin Lovelace <rob00x@gmail.com>
Diff between stplanr versions 0.8.3 dated 2021-07-22 and 0.8.4 dated 2021-10-12
DESCRIPTION | 10 - MD5 | 60 +++--- NEWS.md | 5 R/oneway.R | 16 - R/overline.R | 14 + R/route.R | 4 R/route_bikecitizens.R | 2 R/route_osrm.R | 4 build/partial.rdb |binary build/vignette.rds |binary inst/doc/stplanr-od.R | 82 ++++---- inst/doc/stplanr-od.Rmd | 15 + inst/doc/stplanr-od.html | 362 ++++++++++++--------------------------- inst/doc/stplanr-paper.html | 6 inst/doc/stplanr-route-nets.R | 6 inst/doc/stplanr-route-nets.Rmd | 10 - inst/doc/stplanr-route-nets.html | 2 inst/doc/stplanr-routing.R | 3 inst/doc/stplanr-routing.Rmd | 3 inst/doc/stplanr-routing.html | 7 inst/doc/stplanr.R | 7 inst/doc/stplanr.Rmd | 7 inst/doc/stplanr.html | 12 - man/od_id.Rd | 16 - man/route.Rd | 4 man/route_bikecitizens.Rd | 2 man/route_osrm.Rd | 4 vignettes/stplanr-od.Rmd | 15 + vignettes/stplanr-route-nets.Rmd | 10 - vignettes/stplanr-routing.Rmd | 3 vignettes/stplanr.Rmd | 7 31 files changed, 296 insertions(+), 402 deletions(-)
Title: A Tool for Sensitivity Analysis in Structural Equation Modeling
Description: Perform sensitivity analysis in structural equation modeling using
meta-heuristic optimization methods (e.g., ant colony optimization and others).
The references for the proposed methods are:
(1) Leite, W., & Shen, Z., Marcoulides, K., Fish, C., & Harring, J. (in press).
<doi:10.1080/10705511.2021.1881786>
(2) Harring, J. R., McNeish, D. M., & Hancock, G. R. (2017)
<doi:10.1080/10705511.2018.1506925>;
(3) Socha, K., & Dorigo, M. (2008) <doi:10.1016/j.ejor.2006.06.046>.
We also thank Dr. Krzysztof Socha for sharing his research on ant colony optimization
algorithm with continuous domains and associated R code,
which provided the base for the development of this package.
Author: Walter Leite [aut, cre],
Zuchao Shen [aut],
Gail Fish [ctb],
YongSeok Lee [ctb],
Sanaz Nazari [ctb],
Jia Quan [ctb],
Eric Wright [ctb],
Huibin Zhang [ctb]
Maintainer: Walter Leite <walter.leite@coe.ufl.edu>
Diff between SEMsens versions 1.0.1 dated 2021-02-23 and 1.0.2 dated 2021-10-12
DESCRIPTION | 14 +++++------- MD5 | 44 ++++++++++++++++++++-------------------- NEWS.md | 8 +++++++ R/sa.aco.R | 3 +- R/smith19.R | 5 ++++ build/vignette.rds |binary inst/doc/Hom-vignette.R | 1 inst/doc/Hom-vignette.Rmd | 1 inst/doc/Hom-vignette.pdf |binary inst/doc/SEMsens.R | 1 inst/doc/SEMsens.Rmd | 1 inst/doc/SEMsens.pdf |binary inst/doc/Smith12vignette.R | 1 inst/doc/Smith12vignette.Rmd | 1 inst/doc/Smith12vignette.pdf |binary inst/doc/Smith19_6phantom3.R | 17 ++++++++------- inst/doc/Smith19_6phantom3.Rmd | 25 ++++++++++------------ inst/doc/Smith19_6phantom3.pdf |binary man/smith19.use.Rd | 6 +++++ vignettes/Hom-vignette.Rmd | 1 vignettes/SEMsens.Rmd | 1 vignettes/Smith12vignette.Rmd | 1 vignettes/Smith19_6phantom3.Rmd | 25 ++++++++++------------ 23 files changed, 91 insertions(+), 65 deletions(-)
Title: Paws Low-Level Amazon Web Services API
Description: Functions for making low-level API requests to Amazon Web Services
<https://aws.amazon.com>. The functions handle building, signing, and
sending requests, and receiving responses. They are designed to help build
higher-level interfaces to individual services, such as Simple Storage
Service (S3).
Author: David Kretch [aut, cre],
Adam Banker [aut],
Amazon.com, Inc. [cph]
Maintainer: David Kretch <david.kretch@gmail.com>
Diff between paws.common versions 0.3.12 dated 2021-08-15 and 0.3.13 dated 2021-10-12
DESCRIPTION | 8 MD5 | 164 +- NAMESPACE | 42 NEWS.md | 346 ++--- R/client.R | 256 ++-- R/config.R | 467 ++++--- R/convert.R | 154 +- R/credential_providers.R | 652 +++++----- R/credential_sts.R | 134 +- R/credentials.R | 96 - R/custom_dynamodb.R | 26 R/custom_rds.R | 50 R/custom_s3.R | 448 +++---- R/dateutil.R | 26 R/error.R | 120 - R/handlers.R | 370 +++--- R/handlers_core.R | 252 ++-- R/handlers_ec2query.R | 88 - R/handlers_jsonrpc.R | 124 +- R/handlers_query.R | 136 +- R/handlers_rest.R | 496 ++++---- R/handlers_restjson.R | 94 - R/handlers_restxml.R | 70 - R/idempotency.R | 54 R/iniutil.R | 74 - R/jsonutil.R | 508 ++++---- R/net.R | 336 ++--- R/populate.R | 188 +-- R/populateutil.R | 76 - R/queryutil.R | 300 ++-- R/request.R | 528 ++++---- R/service.R | 316 ++--- R/signer_s3.R | 12 R/signer_s3v4.R | 12 R/signer_v2.R | 8 R/signer_v4.R | 926 +++++++-------- R/stream.R | 222 +-- R/struct.R | 116 - R/tags.R | 322 ++--- R/time.R | 10 R/url.R | 396 +++--- R/util.R | 120 - R/xmlutil.R | 594 ++++----- README.md | 12 man/aws_error.Rd | 78 - man/handlers.Rd | 76 - man/new_request.Rd | 86 - man/new_service.Rd | 156 +- man/send_request.Rd | 60 man/set_config.Rd | 109 - man/tags.Rd | 122 +- tests/testthat.R | 8 tests/testthat/data_ini | 54 tests/testthat/test_aws_error.R | 82 - tests/testthat/test_client.R | 166 +- tests/testthat/test_config.R | 135 +- tests/testthat/test_convert.R | 60 tests/testthat/test_credential_providers.R | 54 tests/testthat/test_credentials.R | 282 ++-- tests/testthat/test_custom_rds.R | 26 tests/testthat/test_custom_s3.R | 450 +++---- tests/testthat/test_dateutil.R | 34 tests/testthat/test_handlers.R | 90 - tests/testthat/test_handlers_core.R | 126 +- tests/testthat/test_handlers_ec2query.R | 854 +++++++------- tests/testthat/test_handlers_jsonrpc.R | 1440 +++++++++++------------ tests/testthat/test_handlers_query.R | 1520 ++++++++++++------------- tests/testthat/test_handlers_rest.R | 148 +- tests/testthat/test_handlers_restjson.R | 1752 ++++++++++++++--------------- tests/testthat/test_handlers_restxml.R | 1538 ++++++++++++------------- tests/testthat/test_iniutil.R | 80 - tests/testthat/test_jsonutil.R | 70 - tests/testthat/test_net.R | 88 - tests/testthat/test_populateutil.R | 78 - tests/testthat/test_queryutil.R | 2 tests/testthat/test_request.R | 54 tests/testthat/test_service.R | 232 +-- tests/testthat/test_signer_v4.R | 278 ++-- tests/testthat/test_struct.R | 98 - tests/testthat/test_tags.R | 182 +-- tests/testthat/test_url.R | 22 tests/testthat/test_util.R | 74 - tests/testthat/test_xmlutil.R | 48 83 files changed, 10303 insertions(+), 10258 deletions(-)
Title: Modeling Workflows
Description: Managing both a 'parsnip' model and a preprocessor, such as a
model formula or recipe from 'recipes', can often be challenging. The goal
of 'workflows' is to streamline this process by bundling the model alongside
the preprocessor, all within the same object.
Author: Davis Vaughan [aut, cre],
RStudio [cph]
Maintainer: Davis Vaughan <davis@rstudio.com>
Diff between workflows versions 0.2.3 dated 2021-07-15 and 0.2.4 dated 2021-10-12
workflows-0.2.3/workflows/R/tune.R |only workflows-0.2.3/workflows/tests/testthat/out |only workflows-0.2.3/workflows/tests/testthat/test-tune.R |only workflows-0.2.4/workflows/DESCRIPTION | 8 workflows-0.2.4/workflows/MD5 | 55 ++--- workflows-0.2.4/workflows/NEWS.md | 12 + workflows-0.2.4/workflows/R/extract.R | 24 +- workflows-0.2.4/workflows/R/fit-action-model.R | 10 - workflows-0.2.4/workflows/R/generics.R |only workflows-0.2.4/workflows/R/pull.R | 54 ----- workflows-0.2.4/workflows/R/zzz.R | 15 - workflows-0.2.4/workflows/README.md | 2 workflows-0.2.4/workflows/build/vignette.rds |binary workflows-0.2.4/workflows/man/add_formula.Rd | 40 +--- workflows-0.2.4/workflows/man/add_model.Rd | 12 - workflows-0.2.4/workflows/man/extract-workflow.Rd | 10 - workflows-0.2.4/workflows/man/fit-workflow.Rd | 6 workflows-0.2.4/workflows/man/rmd/add-formula.Rmd | 8 workflows-0.2.4/workflows/man/workflow-extractors.Rd | 4 workflows-0.2.4/workflows/man/workflow.Rd | 6 workflows-0.2.4/workflows/man/workflows-package.Rd | 5 workflows-0.2.4/workflows/tests/testthat/_snaps/extract.md |only workflows-0.2.4/workflows/tests/testthat/_snaps/printing.md |only workflows-0.2.4/workflows/tests/testthat/_snaps/pull.md |only workflows-0.2.4/workflows/tests/testthat/helper-lifecycle.R |only workflows-0.2.4/workflows/tests/testthat/test-generics.R |only workflows-0.2.4/workflows/tests/testthat/test-pre-action-variables.R | 4 workflows-0.2.4/workflows/tests/testthat/test-printing.R | 49 +---- workflows-0.2.4/workflows/tests/testthat/test-pull.R | 93 ++++++++++ 29 files changed, 218 insertions(+), 199 deletions(-)
Title: Predictive Data Analysis System
Description: Perform a supervised data analysis on a database through a 'shiny' graphical interface. It includes methods such as K-Nearest Neighbors, Decision Trees, ADA Boosting, Extreme Gradient Boosting, Random Forest, Neural Networks, Deep Learning, Support Vector Machines and Bayesian Methods.
Author: Oldemar Rodriguez [aut, cre],
Diego Jiménez [ctb, prg],
Andres Navarro [ctb, prg],
Joseline Quirós [ctb, prg]
Maintainer: Oldemar Rodriguez <oldemar.rodriguez@ucr.ac.cr>
Diff between predictoR versions 2.0.4 dated 2021-08-19 and 2.0.5 dated 2021-10-12
DESCRIPTION | 16 +++---- MD5 | 34 ++++++++-------- R/app_ui.R | 85 +++++++++++++++++++++--------------------- R/golem_utils_server.R | 2 R/golem_utils_ui.R | 6 +- R/mod_acercade.R | 2 R/mod_boosting.R | 2 R/mod_distribuciones.R | 4 - R/mod_ind_nuevos.R | 32 +++++++-------- R/mod_knn.R | 2 R/mod_poder_pred.R | 26 ++++++++---- R/mod_poder_pred_utils.R | 5 -- R/mod_r_forest.R | 2 R/mod_xgboosting.R | 2 R/predictoR.R | 2 inst/app/lang/diccionario.csv | 2 inst/app/lang/translation.bin |binary inst/golem-config.yml | 2 18 files changed, 119 insertions(+), 107 deletions(-)
Title: Historical and Contemporary Boundaries of the United States of
America
Description: The boundaries for geographical units in the United States of
America contained in this package include state, county, congressional
district, and zip code tabulation area. Contemporary boundaries are provided
by the U.S. Census Bureau (public domain). Historical boundaries for the
years from 1629 to 2000 are provided form the Newberry Library's 'Atlas of
Historical County Boundaries' (licensed CC BY-NC-SA). Additional data is
provided in the 'USAboundariesData' package; this package provides an
interface to access that data.
Author: Lincoln Mullen [aut, cre] (<https://orcid.org/0000-0001-5103-6917>),
Jordan Bratt [aut] (<https://orcid.org/0000-0001-9051-7203>),
United States Census Bureau [cph]
Maintainer: Lincoln Mullen <lincoln@lincolnmullen.com>
Diff between USAboundaries versions 0.3.1 dated 2018-03-29 and 0.4.0 dated 2021-10-12
USAboundaries-0.3.1/USAboundaries/R/us_boundaries.R |only USAboundaries-0.3.1/USAboundaries/man/us_boundaries.Rd |only USAboundaries-0.3.1/USAboundaries/tests/testthat/test-us_boundaries.R |only USAboundaries-0.3.1/USAboundaries/tools |only USAboundaries-0.4.0/USAboundaries/DESCRIPTION | 19 USAboundaries-0.4.0/USAboundaries/MD5 | 91 USAboundaries-0.4.0/USAboundaries/NAMESPACE | 2 USAboundaries-0.4.0/USAboundaries/NEWS.md | 7 USAboundaries-0.4.0/USAboundaries/R/data-doc.R | 2 USAboundaries-0.4.0/USAboundaries/R/install-data-pkg.R | 34 USAboundaries-0.4.0/USAboundaries/R/state_codes.R | 2 USAboundaries-0.4.0/USAboundaries/R/us_congressional.R | 2 USAboundaries-0.4.0/USAboundaries/R/us_counties.R | 2 USAboundaries-0.4.0/USAboundaries/R/us_states.R | 2 USAboundaries-0.4.0/USAboundaries/R/us_zipcodes.R | 2 USAboundaries-0.4.0/USAboundaries/R/usboundaries-package.r | 11 USAboundaries-0.4.0/USAboundaries/README.md | 73 USAboundaries-0.4.0/USAboundaries/build/vignette.rds |binary USAboundaries-0.4.0/USAboundaries/data/states_contemporary_lores.rda |binary USAboundaries-0.4.0/USAboundaries/inst/doc/usaboundaries-sample-analysis.R | 22 USAboundaries-0.4.0/USAboundaries/inst/doc/usaboundaries-sample-analysis.Rmd | 6 USAboundaries-0.4.0/USAboundaries/inst/doc/usaboundaries-sample-analysis.html | 4225 ---------- USAboundaries-0.4.0/USAboundaries/man/USAboundaries.Rd | 12 USAboundaries-0.4.0/USAboundaries/man/figures |only USAboundaries-0.4.0/USAboundaries/man/state_codes.Rd | 8 USAboundaries-0.4.0/USAboundaries/man/state_proj.Rd | 6 USAboundaries-0.4.0/USAboundaries/man/states_contemporary_lores.Rd | 6 USAboundaries-0.4.0/USAboundaries/man/us_congressional.Rd | 2 USAboundaries-0.4.0/USAboundaries/man/us_counties.Rd | 2 USAboundaries-0.4.0/USAboundaries/man/us_states.Rd | 2 USAboundaries-0.4.0/USAboundaries/man/us_zipcodes.Rd | 2 USAboundaries-0.4.0/USAboundaries/tests/testthat/test-state_plane-standalone.R | 1 USAboundaries-0.4.0/USAboundaries/tests/testthat/test-us_cities.R | 11 USAboundaries-0.4.0/USAboundaries/tests/testthat/test-us_congressional.R | 1 USAboundaries-0.4.0/USAboundaries/tests/testthat/test-us_counties.R | 1 USAboundaries-0.4.0/USAboundaries/tests/testthat/test-us_states-standalone.R | 1 USAboundaries-0.4.0/USAboundaries/tests/testthat/test-us_states.R | 1 USAboundaries-0.4.0/USAboundaries/tests/testthat/test-us_zipcodes.R | 1 USAboundaries-0.4.0/USAboundaries/vignettes/usaboundaries-sample-analysis.Rmd | 6 39 files changed, 311 insertions(+), 4254 deletions(-)
Title: Shadow-Test Approach to Computerized Adaptive Testing
Description: As an advanced approach to computerized adaptive testing (CAT),
shadow testing (van der Linden(2005) <doi:10.1007/0-387-29054-0>) dynamically
assembles entire shadow tests as a part of
selecting items throughout the testing process.
Selecting items from shadow tests guarantees the compliance of all content
constraints defined by the blueprint. 'RSCAT' is an R package for the
shadow-test approach to CAT. The objective of
'RSCAT' is twofold: 1) Enhancing the effectiveness of shadow-test CAT simulation;
2) Contributing to the academic and scientific community for CAT research.
RSCAT is currently designed for dichotomous items based on the three-parameter logistic (3PL) model.
Author: Bingnan Jiang [aut, cre],
ACT, Inc. [cph]
Maintainer: Bingnan Jiang <bnjiangece@gmail.com>
Diff between RSCAT versions 1.1.2 dated 2021-05-16 and 1.1.3 dated 2021-10-12
RSCAT-1.1.2/RSCAT/inst/java/RSCAT-1.1.2.jar |only RSCAT-1.1.3/RSCAT/DESCRIPTION | 7 ++++--- RSCAT-1.1.3/RSCAT/MD5 | 8 ++++---- RSCAT-1.1.3/RSCAT/README.md | 3 +-- RSCAT-1.1.3/RSCAT/inst/java/RSCAT-1.1.3.jar |only RSCAT-1.1.3/RSCAT/java/pom.xml | 2 +- 6 files changed, 10 insertions(+), 10 deletions(-)
Title: Generate "LaTeX"" Tables of Descriptive Statistics
Description: These functions are especially helpful when writing reports of data analysis using "Sweave".
Author: Kaspar Rufibach
Maintainer: Kaspar Rufibach <kaspar.rufibach@gmail.com>
Diff between reporttools versions 1.1.2 dated 2015-07-04 and 1.1.3 dated 2021-10-12
DESCRIPTION | 12 ++++++------ MD5 | 29 ++++++++++++++++------------- NAMESPACE | 1 + NEWS | 7 +++++++ R/addLineBreak.r | 15 +++++++++------ R/tableDate.r | 14 ++++++++------ R/transformVarNames2.r |only build/partial.rdb |only build/vignette.rds |binary inst/CITATION | 7 ++++--- inst/doc/reporttools.pdf |binary man/addLineBreak.Rd | 1 + man/reporttools-package.Rd | 6 +++--- man/tableContinuous.Rd | 2 +- man/tableDate.Rd | 2 +- man/tableNominal.Rd | 2 +- man/transformVarNames2.Rd |only 17 files changed, 58 insertions(+), 40 deletions(-)
Title: Advanced Tables for Markdown/HTML
Description: Tables with state-of-the-art layout elements such as row spanners,
column spanners, table spanners, zebra striping, and more. While allowing
advanced layout, the underlying css-structure is simple in order to maximize
compatibility with word processors such as 'MS Word' or 'LibreOffice'. The package
also contains a few text formatting functions that help outputting text
compatible with HTML/LaTeX.
Author: Max Gordon [aut, cre],
Stephen Gragg [aut],
Peter Konings [aut]
Maintainer: Max Gordon <max@gforge.se>
Diff between htmlTable versions 2.2.1 dated 2021-05-18 and 2.3.0 dated 2021-10-12
htmlTable-2.2.1/htmlTable/tests/testthat/structure.tex |only htmlTable-2.2.1/htmlTable/tests/visual_tests/word_test.html |only htmlTable-2.3.0/htmlTable/DESCRIPTION | 8 htmlTable-2.3.0/htmlTable/MD5 | 26 htmlTable-2.3.0/htmlTable/NEWS.md | 6 htmlTable-2.3.0/htmlTable/R/tidyHtmlTable.R | 40 htmlTable-2.3.0/htmlTable/R/tidyHtmlTable_helpers_checkUniqueness.r | 16 htmlTable-2.3.0/htmlTable/R/tidyHtmlTable_helpers_getRowTbl.r | 2 htmlTable-2.3.0/htmlTable/R/txtFrmt.R | 1 htmlTable-2.3.0/htmlTable/build/vignette.rds |binary htmlTable-2.3.0/htmlTable/inst/doc/complex_tables.html | 555 +++------- htmlTable-2.3.0/htmlTable/inst/doc/general.html | 499 ++------ htmlTable-2.3.0/htmlTable/inst/doc/tidyHtmlTable.html | 289 ----- htmlTable-2.3.0/htmlTable/man/tidyHtmlTable.Rd | 42 htmlTable-2.3.0/htmlTable/tests/testthat/test-txtFrmt.R | 9 15 files changed, 523 insertions(+), 970 deletions(-)
Title: Several Methods for Procedural Name Generation
Description: A small, dependency-free way to generate random names. Methods
provided include the adjective-surname approach of Docker containers
('<https://github.com/moby/moby/blob/master/pkg/namesgenerator/names-generator.go'),
and combinations of common English or Spanish words.
Author: Michael Mahoney [aut, cre] (<https://orcid.org/0000-0003-2402-304X>)
Maintainer: Michael Mahoney <mike.mahoney.218@gmail.com>
Diff between proceduralnames versions 0.2.0 dated 2021-10-01 and 0.2.1 dated 2021-10-12
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 5 +++++ R/make_names.R | 4 ++-- README.md | 14 +++++++------- 5 files changed, 21 insertions(+), 16 deletions(-)
More information about proceduralnames at CRAN
Permanent link
Title: Estimate a Log-Concave Probability Density from Iid Observations
Description: Given independent and identically distributed observations X(1), ..., X(n), compute the maximum likelihood estimator (MLE) of a density as well as a smoothed version of it under the assumption that the density is log-concave, see Rufibach (2007) and Duembgen and Rufibach (2009). The main function of the package is 'logConDens' that allows computation of the log-concave MLE and its smoothed version. In addition, we provide functions to compute (1) the value of the density and distribution function estimates (MLE and smoothed) at a given point (2) the characterizing functions of the estimator, (3) to sample from the estimated distribution, (5) to compute a two-sample permutation test based on log-concave densities, (6) the ROC curve based on log-concave estimates within cases and controls, including confidence intervals for given values of false positive fractions (7) computation of a confidence interval for the value of the true density at a fixed point. Finally, three datasets that have been used to illustrate log-concave density estimation are made available.
Author: Kaspar Rufibach <kaspar.rufibach@gmail.com> and Lutz Duembgen <duembgen@stat.unibe.ch>
Maintainer: Kaspar Rufibach <kaspar.rufibach@gmail.com>
Diff between logcondens versions 2.1.5 dated 2016-07-13 and 2.1.6 dated 2021-10-12
DESCRIPTION | 10 - MD5 | 87 ++++++++-------- NEWS | 4 build/partial.rdb |only build/vignette.rds |binary data/brightstar.rda |binary data/pancreas.rda |binary data/reliability.rda |binary inst/CITATION | 4 inst/doc/logcondens.pdf |binary man/Jfunctions.Rd | 6 - man/Lhat_eta.Rd | 2 man/Local_LL.Rd | 2 man/Local_LL_all.Rd | 2 man/MLE.Rd | 2 man/Q00.Rd | 4 man/activeSetLogCon.Rd | 6 - man/activeSetRoutines.Rd | 2 man/evaluateLogConDens.Rd | 2 man/icmaLogCon.Rd | 4 man/intECDF.Rd | 6 - man/intF.Rd | 6 - man/isoMean.Rd | 2 man/logConCI.Rd | 208 +++++++++++++++++++-------------------- man/logConCIfunctions.Rd | 6 - man/logConDens.Rd | 6 - man/logConROC.Rd | 2 man/logconTwoSample.Rd | 4 man/logcondens-package.Rd | 14 +- man/maxDiffCDF.Rd | 4 man/plot.dlc.Rd | 6 - man/preProcess.Rd | 2 man/qloglin.Rd | 2 man/quadDeriv.Rd | 2 man/quantilesLogConDens.Rd | 2 man/reliability.Rd | 2 man/reparametrizations.Rd | 2 man/rlogcon.Rd | 4 man/robust.Rd | 4 man/summary.dlc.Rd | 6 - vignettes/plots/-plot1.pdf |binary vignettes/plots/-plot2.pdf |binary vignettes/plots/-plot2sample.pdf |binary vignettes/plots/-plotSimul.pdf |binary vignettes/plots/-sim1.pdf |binary 45 files changed, 216 insertions(+), 211 deletions(-)
Title: Plot Functions for Use in Bibliometrics
Description: Currently, the package provides several functions for plotting and analyzing bibliometric data (JIF, Journal Impact Factor, and paper percentile values), beamplots with citations and percentiles, and three plot functions to visualize the result of a reference publication year spectroscopy (RPYS) analysis performed in the free software 'CRExplorer' (see <http://crexplorer.net>). Further extension to more plot variants is planned.
Author: Robin Haunschild [aut, cre]
Maintainer: Robin Haunschild <R.Haunschild@fkf.mpg.de>
Diff between BibPlots versions 0.0.7 dated 2021-08-18 and 0.0.8 dated 2021-10-12
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++++------ NAMESPACE | 2 ++ R/inv_perc_beamplot.R |only R/perc_beamplot.R |only R/rpys.R | 2 +- R/rpys_bl.R | 20 ++++++++++---------- man/inv_perc_beamplot.Rd |only man/perc_beamplot.Rd |only man/rpys.Rd | 2 +- man/rpys_bl.Rd | 12 ++++++------ 11 files changed, 34 insertions(+), 28 deletions(-)
Title: A Flexible Modelling Environment for Inverse Modelling,
Sensitivity, Identifiability and Monte Carlo Analysis
Description: Provides functions to help in fitting models to data, to
perform Monte Carlo, sensitivity and identifiability analysis. It is
intended to work with models be written as a set of differential
equations that are solved either by an integration routine from
package 'deSolve', or a steady-state solver from package
'rootSolve'. However, the methods can also be used with other types of
functions.
Author: Karline Soetaert [aut, cre] (<https://orcid.org/0000-0003-4603-7100>),
Thomas Petzoldt [aut] (<https://orcid.org/0000-0002-4951-6468>)
Maintainer: Karline Soetaert <karline.soetaert@nioz.nl>
Diff between FME versions 1.3.6.1 dated 2019-12-18 and 1.3.6.2 dated 2021-10-12
FME-1.3.6.1/FME/build/vignette.rds |only FME-1.3.6.1/FME/inst/doc/FME.R |only FME-1.3.6.1/FME/inst/doc/FME.Rnw |only FME-1.3.6.1/FME/inst/doc/FMEdyna.R |only FME-1.3.6.1/FME/inst/doc/FMEdyna.Rnw |only FME-1.3.6.1/FME/inst/doc/FMEmcmc.R |only FME-1.3.6.1/FME/inst/doc/FMEmcmc.Rnw |only FME-1.3.6.1/FME/inst/doc/FMEother.R |only FME-1.3.6.1/FME/inst/doc/FMEother.Rnw |only FME-1.3.6.1/FME/inst/doc/FMEsteady.R |only FME-1.3.6.1/FME/inst/doc/FMEsteady.Rnw |only FME-1.3.6.2/FME/DESCRIPTION | 12 FME-1.3.6.2/FME/MD5 | 45 - FME-1.3.6.2/FME/build/partial.rdb |only FME-1.3.6.2/FME/inst/CITATION | 4 FME-1.3.6.2/FME/inst/doc/FME-HIV.pdf |only FME-1.3.6.2/FME/inst/doc/FME.pdf |binary FME-1.3.6.2/FME/inst/doc/FMEdyna.pdf |binary FME-1.3.6.2/FME/inst/doc/FMEmcmc.pdf |binary FME-1.3.6.2/FME/inst/doc/FMEother.pdf |binary FME-1.3.6.2/FME/inst/doc/FMEsteady.pdf |binary FME-1.3.6.2/FME/man/FME.Rd | 2 FME-1.3.6.2/FME/man/collin.Rd | 9 FME-1.3.6.2/FME/man/cross2long.Rd | 5 FME-1.3.6.2/FME/man/modCRL.Rd | 7 FME-1.3.6.2/FME/man/modCost.Rd | 5 FME-1.3.6.2/FME/man/modFit.Rd | 12 FME-1.3.6.2/FME/man/modMCMC.Rd | 1107 ++++++++++++++++----------------- FME-1.3.6.2/FME/man/sensFun.Rd | 9 FME-1.3.6.2/FME/man/sensRange.Rd | 8 30 files changed, 603 insertions(+), 622 deletions(-)
Title: Durability of Vaccine Efficacy
Description: Implements maximum likelihood methods for
evaluating the durability of vaccine efficacy in a randomized,
placebo-controlled clinical trial with staggered enrollment of participants
and potential crossover of placebo recipients before the end of the trial.
Lin, D. Y., Zeng, D., and Gilbert, P. B. (2021)
<doi:10.1093/cid/ciab226>
and
Lin, D. Y., Gu, Y., Zeng, D., Janes, H. E., and Gilbert, P. B. (2021)
<doi:10.1093/cid/ciab630>.
Author: Danyu Lin [aut],
Yu Gu [aut],
Donglin Zeng [aut],
Shannon Holloway [aut, cre]
Maintainer: Shannon Holloway <sthollow@ncsu.edu>
Diff between DOVE versions 1.7 dated 2021-09-06 and 1.8 dated 2021-10-12
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NEWS | 9 ++++++++- data/doveData.RData |binary inst/doc/dove-vignette.pdf |binary src/compare.cpp | 2 +- 6 files changed, 18 insertions(+), 11 deletions(-)
Title: Variable Importance and Variable Interaction Displays
Description: A suite of plots for displaying variable importance and two-way variable interaction jointly. Can also display partial dependence plots laid out in a pairs plot or 'zenplots' style.
Author: Alan Inglis [aut, cre],
Andrew Parnell [aut],
Catherine Hurley [aut]
Maintainer: Alan Inglis <alan.inglis@mu.ie>
Diff between vivid versions 0.2.1 dated 2021-08-20 and 0.2.2 dated 2021-10-12
DESCRIPTION | 6 +++--- MD5 | 24 ++++++++++++------------ NEWS.md | 6 ++++-- R/pdpPairs.R | 41 ++++++++++++++++++++++++++++++++--------- R/pdpZen.R | 11 +++-------- R/viviHeatmap.R | 25 ++++++++++++++++--------- R/viviNetwork.R | 17 ++++++++++------- README.md | 2 +- inst/doc/vivid.html | 22 +++++++++++----------- inst/doc/vividQStart.html | 14 +++++++------- man/pdpPairs.Rd | 3 +++ man/viviHeatmap.Rd | 11 +++++++---- man/viviNetwork.Rd | 13 ++++++++----- 13 files changed, 117 insertions(+), 78 deletions(-)
Title: Shared Tools for Tracking Data
Description: A collection of commonly used tools for animal movement and other tracking
data. Variously distance, angle, bearing, distance-to, bearing-to and speed are
provided for geographic data that can be used directly or within 'tidyverse'
syntax. Distances and bearings are calculated using modern geodesic methods as
provided by Charles F. F. Karney (2013) <doi:10.1007/s00190-012-0578-z>
via the 'geodist' and 'geosphere' packages.
Author: Michael Sumner [aut, cre] (<https://orcid.org/0000-0002-2471-7511>)
Maintainer: Michael Sumner <mdsumner@gmail.com>
Diff between traipse versions 0.2.0 dated 2020-10-25 and 0.2.5 dated 2021-10-12
DESCRIPTION | 6 +-- MD5 | 20 +++++----- NEWS.md | 7 +++ README.md | 56 ++++++++++++------------------ man/figures/README-dest-point-1.png |binary man/figures/README-example-group_by-1.png |binary man/figures/README-example-group_by-2.png |binary man/figures/README-example-group_by-3.png |binary man/figures/README-intermediate-1.png |binary man/figures/README-intermediate-2.png |binary tests/testthat/test-bearing_to.R | 9 ++++ 11 files changed, 50 insertions(+), 48 deletions(-)
Title: Automatic Calculation of Effects for Piecewise Structural
Equation Models
Description: Automatically calculate direct, indirect, and total effects for
piecewise structural equation models, comprising lists of fitted models
representing structured equations (Lefcheck 2016 <doi:10/f8s8rb>).
Confidence intervals are provided via bootstrapping.
Author: Mark Murphy [aut, cre]
Maintainer: Mark Murphy <murphymv@gmail.com>
Diff between semEff versions 0.5.0 dated 2021-04-09 and 0.6.0 dated 2021-10-12
semEff-0.5.0/semEff/data/Shipley.rda |only semEff-0.5.0/semEff/man/Shipley.Growth.Rd |only semEff-0.5.0/semEff/man/Shipley.Rd |only semEff-0.5.0/semEff/man/Shipley.SEM.Boot.Rd |only semEff-0.5.0/semEff/man/Shipley.SEM.Eff.Rd |only semEff-0.5.0/semEff/man/Shipley.SEM.Rd |only semEff-0.5.0/semEff/man/figures |only semEff-0.6.0/semEff/DESCRIPTION | 26 semEff-0.6.0/semEff/MD5 | 92 +- semEff-0.6.0/semEff/NAMESPACE | 12 semEff-0.6.0/semEff/NEWS.md | 36 semEff-0.6.0/semEff/R/bootEff-fun.R | 481 ++++++----- semEff-0.6.0/semEff/R/data.R | 67 - semEff-0.6.0/semEff/R/helper-fun.R | 173 ++-- semEff-0.6.0/semEff/R/semEff-fun.R | 945 +++++++++++++++------- semEff-0.6.0/semEff/R/semEff-package.R | 4 semEff-0.6.0/semEff/R/stdEff-fun.R | 1162 ++++++++++++++++------------ semEff-0.6.0/semEff/README.md | 153 --- semEff-0.6.0/semEff/build |only semEff-0.6.0/semEff/data/shipley.rda |only semEff-0.6.0/semEff/inst/WORDLIST | 16 semEff-0.6.0/semEff/inst/doc |only semEff-0.6.0/semEff/man/Param.Type.Rd | 2 semEff-0.6.0/semEff/man/R2.Rd | 219 ++--- semEff-0.6.0/semEff/man/RVIF.Rd | 2 semEff-0.6.0/semEff/man/VIF.Rd | 36 semEff-0.6.0/semEff/man/avgEst.Rd | 37 semEff-0.6.0/semEff/man/bootCI.Rd | 72 - semEff-0.6.0/semEff/man/bootEff.Rd | 191 ++-- semEff-0.6.0/semEff/man/getData.Rd | 36 semEff-0.6.0/semEff/man/getEff.Rd | 49 - semEff-0.6.0/semEff/man/getX.Rd |only semEff-0.6.0/semEff/man/getY.Rd | 27 semEff-0.6.0/semEff/man/glt.Rd | 111 +- semEff-0.6.0/semEff/man/pSapply.Rd | 49 - semEff-0.6.0/semEff/man/predEff.Rd | 131 +-- semEff-0.6.0/semEff/man/print.bootCI.Rd |only semEff-0.6.0/semEff/man/print.semEff.Rd | 25 semEff-0.6.0/semEff/man/rMapply.Rd | 23 semEff-0.6.0/semEff/man/sdW.Rd | 8 semEff-0.6.0/semEff/man/semEff-package.Rd | 6 semEff-0.6.0/semEff/man/semEff.Rd | 156 +-- semEff-0.6.0/semEff/man/shipley.Rd |only semEff-0.6.0/semEff/man/shipley.growth.Rd |only semEff-0.6.0/semEff/man/shipley.sem.Rd |only semEff-0.6.0/semEff/man/shipley.sem.boot.Rd |only semEff-0.6.0/semEff/man/shipley.sem.eff.Rd |only semEff-0.6.0/semEff/man/stdEff.Rd | 188 ++-- semEff-0.6.0/semEff/man/summary.semEff.Rd |only semEff-0.6.0/semEff/man/varW.Rd | 9 semEff-0.6.0/semEff/man/xNam.Rd | 6 semEff-0.6.0/semEff/vignettes |only 52 files changed, 2620 insertions(+), 1930 deletions(-)
Title: R Bindings to the 'Quantuccia' Header-Only Essentials of
'QuantLib'
Description: 'QuantLib' bindings are provided for R using 'Rcpp' and the
header-only 'Quantuccia' variant (put together by Peter Caspers) offering
an essential subset of 'QuantLib'. See the included file 'AUTHORS' for a full
list of contributors to both 'QuantLib' and 'Quantuccia'.
Author: Dirk Eddelbuettel; the authors and contributors of QuantLib
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppQuantuccia versions 0.0.3 dated 2019-08-19 and 0.0.4 dated 2021-10-12
ChangeLog | 36 +++++++ DESCRIPTION | 11 +- MD5 | 16 +-- README.md | 10 +- build/partial.rdb |binary inst/NEWS.Rd | 13 ++ inst/include/RcppQuantuccia_types.h | 14 ++- inst/include/ql/time/calendars/unitedstates.hpp | 112 +++++++++++++++++++++++- man/RcppQuantuccia-package.Rd | 2 9 files changed, 193 insertions(+), 21 deletions(-)
More information about RcppQuantuccia at CRAN
Permanent link
Title: Design and Analysis of Replication Studies
Description: Provides utilities for the design and analysis of replication studies.
Features both traditional methods based on statistical significance and
more recent methods such as the sceptical p-value; Held L. (2020) <doi:10.1111/rssa.12493>.
Also provides related methods including the harmonic mean chi-squared test; Held, L. (2020), <doi:10.1111/rssc.12410>,
and intrinsic credibility; Held, L. (2019) <doi:10.1098/rsos.181534>.
Contains datasets from four large-scale replication projects.
Author: Leonhard Held [aut] (<https://orcid.org/0000-0002-8686-5325>),
Samuel Pawel [cre, aut] (<https://orcid.org/0000-0003-2779-320X>),
Charlotte Micheloud [aut] (<https://orcid.org/0000-0002-4995-4505>),
Florian Gerber [aut] (<https://orcid.org/0000-0001-8545-5263>)
Maintainer: Samuel Pawel <samuel.pawel@uzh.ch>
Diff between ReplicationSuccess versions 1.0.0 dated 2021-07-16 and 1.1.0 dated 2021-10-12
DESCRIPTION | 25 +-- MD5 | 23 +- NAMESPACE | 2 NEWS.md | 10 + R/hMeanChiSq.R | 314 ++++++++++++++++++++++++++++----------- README.md | 7 build/partial.rdb |binary build/vignette.rds |binary inst/doc/ReplicationSuccess.Rnw | 4 inst/doc/ReplicationSuccess.pdf |binary man/hMeanChiSq.Rd | 103 ++++++++---- man/unirootAll.Rd |only vignettes/ReplicationSuccess.Rnw | 4 13 files changed, 348 insertions(+), 144 deletions(-)
More information about ReplicationSuccess at CRAN
Permanent link
Title: Gaussian Parsimonious Clustering Models with Covariates and a
Noise Component
Description: Clustering via parsimonious Gaussian Mixtures of Experts using the MoEClust models introduced by Murphy and Murphy (2020) <doi:10.1007/s11634-019-00373-8>. This package fits finite Gaussian mixture models with a formula interface for supplying gating and/or expert network covariates using a range of parsimonious covariance parameterisations from the GPCM family via the EM/CEM algorithm. Visualisation of the results of such models using generalised pairs plots and the inclusion of an additional noise component is also facilitated. A greedy forward stepwise search algorithm is provided for identifying the optimal model in terms of the number of components, the GPCM covariance parameterisation, and the subsets of gating/expert network covariates.
Author: Keefe Murphy [aut, cre] (<https://orcid.org/0000-0002-7709-3159>),
Thomas Brendan Murphy [ctb] (<https://orcid.org/0000-0002-5668-7046>)
Maintainer: Keefe Murphy <keefe.murphy@mu.ie>
Diff between MoEClust versions 1.4.0 dated 2021-06-21 and 1.4.1 dated 2021-10-12
DESCRIPTION | 10 MD5 | 30 - R/Functions.R | 862 ++++++++++++++++++++++++++++++------------------ R/MoEClust.R | 4 R/Plotting_Functions.R | 13 README.md | 2 build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 15 inst/NEWS.md | 23 + inst/doc/MoEClust.html | 22 - man/MoEClust-package.Rd | 4 man/MoE_compare.Rd | 2 man/MoE_control.Rd | 28 + man/MoE_gpairs.Rd | 2 man/MoE_stepwise.Rd | 45 +- 16 files changed, 677 insertions(+), 385 deletions(-)
Title: log Normal Linear Regression
Description: Functions to fits simple linear regression models with log normal errors
and identity link, i.e. taking the responses on the original scale. See
Muggeo (2018) <doi:10.13140/RG.2.2.18118.16965>.
Author: Vito M. R. Muggeo [aut, cre] (<https://orcid.org/0000-0002-3386-4054>)
Maintainer: Vito M. R. Muggeo <vito.muggeo@unipa.it>
Diff between logNormReg versions 0.3-0 dated 2019-10-16 and 0.4-0 dated 2021-10-12
DESCRIPTION | 10 - MD5 | 36 +++--- NAMESPACE | 38 +++---- NEWS | 14 ++ R/confint.lognlm.R | 249 +++++++++++++++++++++++----------------------- R/extractAIC.lognlm.R | 13 +- R/logLik.lognlm.R | 6 - R/lognlm.R | 12 +- R/lognlm.fit.R | 142 +++++++++++++++++--------- R/print.lognlm.R | 9 + R/print.summary.lognlm.R | 12 +- R/vcov.lognlm.R | 77 ++++++++------ build/partial.rdb |binary man/confint.lognlm.Rd | 14 +- man/logLik.lognlm.Rd | 8 - man/logNormReg-package.Rd | 6 - man/lognlm.Rd | 17 +-- man/lognlm.fit.Rd | 7 - man/vcov.lognlm.Rd | 28 ++--- 19 files changed, 394 insertions(+), 304 deletions(-)
Title: Visualize Data on Spirals
Description: It visualizes data along an Archimedean spiral <https://en.wikipedia.org/wiki/Archimedean_spiral>.
It has two major advantages for visualization: 1. It is able to visualize data with very long axis with high
resolution. 2. It is efficient for time series data to reveal periodic patterns.
Author: Zuguang Gu [aut, cre] (<https://orcid.org/0000-0002-7395-8709>)
Maintainer: Zuguang Gu <z.gu@dkfz.de>
Diff between spiralize versions 1.0.2 dated 2021-07-08 and 1.0.3 dated 2021-10-12
DESCRIPTION | 14 +++++++------- MD5 | 21 +++++++++++---------- NAMESPACE | 1 - NEWS | 5 +++++ R/dendrogram.R | 6 +++++- R/graphics.R | 6 +++++- R/initialize.R | 23 ++++++++++++++++++++--- inst/doc/spiralize.Rmd | 2 +- inst/doc/spiralize.html | 6 +++--- inst/extdata/circadian_expression_mouse_Elf1.rds |only man/spiral_initialize.Rd | 3 ++- vignettes/spiralize.Rmd | 2 +- 12 files changed, 60 insertions(+), 29 deletions(-)
Title: Weighted and Standard Elo Rates
Description: Estimates the standard and weighted Elo (WElo, Angelini et al., 2021 <doi:10.1016/j.ejor.2021.04.011>) rates. The current version provides these rates for tennis. In the future, new sports will be added. The 'welo' package offers a flexible tool to estimate the WElo and Elo rates, according to different systems of weights (games or sets) and scale factors (constant, proportional to the number of matches, with more weight on Grand Slam matches or on matches played on a specific surface). Moreover, the package gives the possibility of estimating the (bootstrap) standard errors for the rates. Finally, the package includes a betting function which automatically selects the matches on which place a bet.
Author: Vincenzo Candila [aut, cre]
Maintainer: Vincenzo Candila <candilav@gmail.com>
Diff between welo versions 0.1.0 dated 2021-04-30 and 0.1.1 dated 2021-10-12
DESCRIPTION | 10 - MD5 | 9 - NEWS.md |only R/functions.R | 437 ++++++++++++++++++++---------------------------------- build/partial.rdb |binary man/welofit.Rd | 18 +- 6 files changed, 185 insertions(+), 289 deletions(-)
Title: Handling and Manipulating Remote Sensing Data
Description: Herein, we provide a broad variety of functions which are useful
for handling, manipulating, and visualizing satellite-based remote sensing
data. These operations range from mere data import and layer handling (eg
subsetting), over Raster* typical data wrangling (eg crop, extend), to more
sophisticated (pre-)processing tasks typically applied to satellite imagery
(eg atmospheric and topographic correction). This functionality is
complemented by a full access to the satellite layers' metadata at any
stage and the documentation of performed actions in a separate log file.
Currently available sensors include Landsat 4-5 (TM), 7 (ETM+), and 8
(OLI/TIRS Combined), and additional compatibility is ensured for the Landsat
Global Land Survey data set.
Author: Thomas Nauss, Hanna Meyer, Tim Appelhans, Florian Detsch
Maintainer: Florian Detsch <fdetsch@web.de>
Diff between satellite versions 1.0.3 dated 2021-10-06 and 1.0.4 dated 2021-10-12
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- NAMESPACE | 3 ++- NEWS | 12 ++++++++++++ NEWS.md | 22 +++++++++++++++++----- R/satellite-package.R | 1 + build/partial.rdb |binary inst/doc/landsat-calibration.html | 4 ++-- inst/doc/satellite.html | 28 ++++++++++++++-------------- 9 files changed, 60 insertions(+), 34 deletions(-)
Title: An R Interface to the Onigmo Regular Expression Library
Description: Provides an alternative to R's built-in functionality for handling
regular expressions, based on the Onigmo library. Offers first-class
compiled regex objects, partial matching and function-based substitutions,
amongst other features.
Author: Jon Clayden, based on Onigmo by K. Kosako and K. Takata
Maintainer: Jon Clayden <code@clayden.org>
Diff between ore versions 1.6.3 dated 2019-11-02 and 1.7.0 dated 2021-10-12
ore-1.6.3/ore/man/ore.dict.Rd |only ore-1.6.3/ore/man/ore.escape.Rd |only ore-1.6.3/ore/man/ore.file.Rd |only ore-1.6.3/ore/man/ore.ismatch.Rd |only ore-1.6.3/ore/man/ore.lastmatch.Rd |only ore-1.6.3/ore/man/ore.search.Rd |only ore-1.6.3/ore/man/ore.split.Rd |only ore-1.6.3/ore/man/ore.subst.Rd |only ore-1.6.3/ore/tests/test-all.R |only ore-1.6.3/ore/tests/testthat |only ore-1.7.0/ore/DESCRIPTION | 13 ore-1.7.0/ore/MD5 | 194 + ore-1.7.0/ore/NAMESPACE | 6 ore-1.7.0/ore/NEWS | 43 ore-1.7.0/ore/R/dict.R | 10 ore-1.7.0/ore/R/es.R | 23 ore-1.7.0/ore/R/file.R | 10 ore-1.7.0/ore/R/match.R | 270 +- ore-1.7.0/ore/R/ore.R | 41 ore-1.7.0/ore/R/zzz.R | 46 ore-1.7.0/ore/README.md | 392 ++-- ore-1.7.0/ore/configure | 2935 ++++++++++++++---------------- ore-1.7.0/ore/configure.ac | 6 ore-1.7.0/ore/data |only ore-1.7.0/ore/inst |only ore-1.7.0/ore/man/es.Rd | 6 ore-1.7.0/ore/man/glass.Rd |only ore-1.7.0/ore/man/matches.Rd | 21 ore-1.7.0/ore/man/ore.Rd | 28 ore-1.7.0/ore/man/ore_dict.Rd |only ore-1.7.0/ore/man/ore_escape.Rd |only ore-1.7.0/ore/man/ore_file.Rd |only ore-1.7.0/ore/man/ore_ismatch.Rd |only ore-1.7.0/ore/man/ore_lastmatch.Rd |only ore-1.7.0/ore/man/ore_search.Rd |only ore-1.7.0/ore/man/ore_split.Rd |only ore-1.7.0/ore/man/ore_subst.Rd |only ore-1.7.0/ore/man/ore_switch.Rd |only ore-1.7.0/ore/src/Makevars | 2 ore-1.7.0/ore/src/compile.c | 231 -- ore-1.7.0/ore/src/compile.h | 17 ore-1.7.0/ore/src/escape.c | 11 ore-1.7.0/ore/src/match.c | 270 -- ore-1.7.0/ore/src/match.h | 15 ore-1.7.0/ore/src/onig/config.h.in | 42 ore-1.7.0/ore/src/onig/config.h.win | 173 - ore-1.7.0/ore/src/onig/enc/ascii.c | 4 ore-1.7.0/ore/src/onig/enc/big5.c | 12 ore-1.7.0/ore/src/onig/enc/euc_jp.c | 4 ore-1.7.0/ore/src/onig/enc/euc_kr.c | 8 ore-1.7.0/ore/src/onig/enc/euc_tw.c | 4 ore-1.7.0/ore/src/onig/enc/gb18030.c | 4 ore-1.7.0/ore/src/onig/enc/iso_8859_1.c | 6 ore-1.7.0/ore/src/onig/enc/iso_8859_10.c | 6 ore-1.7.0/ore/src/onig/enc/iso_8859_11.c | 4 ore-1.7.0/ore/src/onig/enc/iso_8859_13.c | 6 ore-1.7.0/ore/src/onig/enc/iso_8859_14.c | 6 ore-1.7.0/ore/src/onig/enc/iso_8859_15.c | 6 ore-1.7.0/ore/src/onig/enc/iso_8859_16.c | 6 ore-1.7.0/ore/src/onig/enc/iso_8859_2.c | 6 ore-1.7.0/ore/src/onig/enc/iso_8859_3.c | 6 ore-1.7.0/ore/src/onig/enc/iso_8859_4.c | 6 ore-1.7.0/ore/src/onig/enc/iso_8859_5.c | 6 ore-1.7.0/ore/src/onig/enc/iso_8859_6.c | 4 ore-1.7.0/ore/src/onig/enc/iso_8859_7.c | 6 ore-1.7.0/ore/src/onig/enc/iso_8859_8.c | 4 ore-1.7.0/ore/src/onig/enc/iso_8859_9.c | 6 ore-1.7.0/ore/src/onig/enc/koi8_r.c | 4 ore-1.7.0/ore/src/onig/enc/koi8_u.c | 4 ore-1.7.0/ore/src/onig/enc/shift_jis.c | 4 ore-1.7.0/ore/src/onig/enc/unicode.c | 27 ore-1.7.0/ore/src/onig/enc/utf_16be.c | 4 ore-1.7.0/ore/src/onig/enc/utf_16le.c | 4 ore-1.7.0/ore/src/onig/enc/utf_32be.c | 4 ore-1.7.0/ore/src/onig/enc/utf_32le.c | 4 ore-1.7.0/ore/src/onig/enc/utf_8.c | 143 + ore-1.7.0/ore/src/onig/enc/windows_1250.c | 6 ore-1.7.0/ore/src/onig/enc/windows_1251.c | 6 ore-1.7.0/ore/src/onig/enc/windows_1252.c | 6 ore-1.7.0/ore/src/onig/enc/windows_1253.c | 6 ore-1.7.0/ore/src/onig/enc/windows_1254.c | 6 ore-1.7.0/ore/src/onig/enc/windows_1257.c | 6 ore-1.7.0/ore/src/onig/enc/windows_31j.c | 4 ore-1.7.0/ore/src/onig/onigmo.h | 12 ore-1.7.0/ore/src/onig/regcomp.c | 267 -- ore-1.7.0/ore/src/onig/regenc.c | 8 ore-1.7.0/ore/src/onig/regenc.h | 6 ore-1.7.0/ore/src/onig/regerror.c | 18 ore-1.7.0/ore/src/onig/regexec.c | 452 ---- ore-1.7.0/ore/src/onig/regint.h | 13 ore-1.7.0/ore/src/onig/regparse.c | 980 ++-------- ore-1.7.0/ore/src/onig/regparse.h | 4 ore-1.7.0/ore/src/onig/regversion.c | 8 ore-1.7.0/ore/src/print.c | 77 ore-1.7.0/ore/src/print.h | 37 ore-1.7.0/ore/src/split.c | 65 ore-1.7.0/ore/src/subst.c | 454 +++- ore-1.7.0/ore/src/subst.h | 15 ore-1.7.0/ore/src/text.c |only ore-1.7.0/ore/src/text.h |only ore-1.7.0/ore/src/zzz.c | 6 ore-1.7.0/ore/tests/tinytest.R |only 102 files changed, 3630 insertions(+), 3955 deletions(-)
Title: Generalised Joint Regression Modelling
Description: Routines for fitting various joint (and univariate) regression models, with several types of covariate effects, in the presence of equations' errors association, endogeneity, non-random sample selection or partial observability.
Author: Giampiero Marra <giampiero.marra@ucl.ac.uk> and Rosalba Radice <rosalba.radice@city.ac.uk>
Maintainer: Giampiero Marra <giampiero.marra@ucl.ac.uk>
Diff between GJRM versions 0.2-5 dated 2021-09-17 and 0.2-5.1 dated 2021-10-12
ChangeLog | 3 DESCRIPTION | 14 - MD5 | 72 +++++---- NAMESPACE | 7 R/AT.r | 324 ++++++++++++++++++++++++++++++++++++++++++- R/CopulaCLM.r | 2 R/SemiParROY.fit.post.r | 73 ++++++--- R/SemiParROY.r | 32 +++- R/ass.ms.r | 2 R/bprobgHsBinROY.r | 2 R/bprobgHsCont2ROY.r | 2 R/bprobgHsCont3ROY.r | 2 R/bprobgHsDiscr1ROY.r | 7 R/bprobgHsDiscr2ROY.r | 6 R/copulaSampleSel.r | 2 R/gamls.upsv.r | 14 - R/gamlss.R | 2 R/ggmtrust.R | 9 - R/gjrm.r | 2 R/int.postcheck.R | 81 +++++----- R/overall.svG.R | 4 R/post.check.R | 222 +++++++++++++++++++++++++++-- R/ppROY.r |only R/pream.wm.r | 6 R/pred.mvt.r | 4 R/print.AT.r | 21 ++ R/print.SemiParBIV.r | 6 R/print.SemiParROY.r |only R/print.summary.SemiParROY.r |only R/pscr.r | 288 +++++++++++++++++++++++++++++++++++++- R/pscr0.r | 77 ++++++++++ R/summary.SemiParROY.r |only R/summary.copulaSampleSel.r | 2 R/summary.gamlss.r | 2 R/summary.gjrm.r | 2 R/susu.r | 19 ++ R/susutsn.r | 113 +++++++++++++- man/meps.Rd | 3 man/print.SemiParROY.Rd |only man/summary.SemiParROY.Rd |only 40 files changed, 1249 insertions(+), 178 deletions(-)
Title: Calculate Text Polarity Sentiment
Description: Calculate text polarity sentiment at the sentence level and
optionally aggregate by rows or grouping variable(s).
Author: Tyler Rinker [aut, cre]
Maintainer: Tyler Rinker <tyler.rinker@gmail.com>
Diff between sentimentr versions 2.7.1 dated 2019-03-22 and 2.9.0 dated 2021-10-12
sentimentr-2.7.1/sentimentr/data/datalist |only sentimentr-2.9.0/sentimentr/DESCRIPTION | 13 sentimentr-2.9.0/sentimentr/MD5 | 147 ++++------ sentimentr-2.9.0/sentimentr/NEWS | 44 ++ sentimentr-2.9.0/sentimentr/R/emotion.R | 42 +- sentimentr-2.9.0/sentimentr/R/extract_emotion_terms.R | 19 - sentimentr-2.9.0/sentimentr/R/extract_sentiment_terms.R | 24 + sentimentr-2.9.0/sentimentr/R/get_sentences.R | 17 - sentimentr-2.9.0/sentimentr/R/highlight.R | 2 sentimentr-2.9.0/sentimentr/R/profanity.R | 1 sentimentr-2.9.0/sentimentr/R/profanity_by.R | 1 sentimentr-2.9.0/sentimentr/R/sentiment.R | 118 +++++++- sentimentr-2.9.0/sentimentr/R/sentiment_by.R | 13 sentimentr-2.9.0/sentimentr/R/sentimentr-package.R | 28 - sentimentr-2.9.0/sentimentr/R/uncombine.R | 2 sentimentr-2.9.0/sentimentr/R/utils.R | 14 sentimentr-2.9.0/sentimentr/README.md | 20 - sentimentr-2.9.0/sentimentr/data/course_evaluations.rda |binary sentimentr-2.9.0/sentimentr/data/crowdflower_deflategate.rda |binary sentimentr-2.9.0/sentimentr/data/crowdflower_products.rda |binary sentimentr-2.9.0/sentimentr/data/crowdflower_self_driving_cars.rda |binary sentimentr-2.9.0/sentimentr/data/crowdflower_weather.rda |binary sentimentr-2.9.0/sentimentr/data/hotel_reviews.rda |binary sentimentr-2.9.0/sentimentr/data/hu_liu_apex_reviews.rda |binary sentimentr-2.9.0/sentimentr/data/hu_liu_cannon_reviews.rda |binary sentimentr-2.9.0/sentimentr/data/hu_liu_jukebox_reviews.rda |binary sentimentr-2.9.0/sentimentr/data/hu_liu_nikon_reviews.rda |binary sentimentr-2.9.0/sentimentr/data/hu_liu_nokia_reviews.rda |binary sentimentr-2.9.0/sentimentr/data/kaggle_movie_reviews.rda |binary sentimentr-2.9.0/sentimentr/data/kotzias_reviews_amazon_cells.rda |binary sentimentr-2.9.0/sentimentr/data/kotzias_reviews_imdb.rda |binary sentimentr-2.9.0/sentimentr/data/kotzias_reviews_yelp.rda |binary sentimentr-2.9.0/sentimentr/data/nyt_articles.rda |binary sentimentr-2.9.0/sentimentr/data/presidential_debates_2012.rda |binary sentimentr-2.9.0/sentimentr/data/sam_i_am.rda |binary sentimentr-2.9.0/sentimentr/inst/CITATION | 12 sentimentr-2.9.0/sentimentr/man/as_key.Rd | 32 +- sentimentr-2.9.0/sentimentr/man/average_downweighted_zero.Rd | 8 sentimentr-2.9.0/sentimentr/man/combine_data.Rd | 9 sentimentr-2.9.0/sentimentr/man/course_evaluations.Rd | 4 sentimentr-2.9.0/sentimentr/man/crowdflower_deflategate.Rd | 6 sentimentr-2.9.0/sentimentr/man/crowdflower_products.Rd | 6 sentimentr-2.9.0/sentimentr/man/crowdflower_self_driving_cars.Rd | 6 sentimentr-2.9.0/sentimentr/man/crowdflower_weather.Rd | 6 sentimentr-2.9.0/sentimentr/man/emotion.Rd | 28 + sentimentr-2.9.0/sentimentr/man/emotion_by.Rd | 3 sentimentr-2.9.0/sentimentr/man/extract_emotion_terms.Rd | 15 - sentimentr-2.9.0/sentimentr/man/extract_profanity_terms.Rd | 7 sentimentr-2.9.0/sentimentr/man/extract_sentiment_terms.Rd | 16 - sentimentr-2.9.0/sentimentr/man/general_rescale.Rd | 11 sentimentr-2.9.0/sentimentr/man/highlight.Rd | 11 sentimentr-2.9.0/sentimentr/man/hotel_reviews.Rd | 6 sentimentr-2.9.0/sentimentr/man/hu_liu_apex_reviews.Rd | 6 sentimentr-2.9.0/sentimentr/man/hu_liu_cannon_reviews.Rd | 6 sentimentr-2.9.0/sentimentr/man/hu_liu_jukebox_reviews.Rd | 6 sentimentr-2.9.0/sentimentr/man/hu_liu_nikon_reviews.Rd | 4 sentimentr-2.9.0/sentimentr/man/hu_liu_nokia_reviews.Rd | 6 sentimentr-2.9.0/sentimentr/man/kaggle_movie_reviews.Rd | 4 sentimentr-2.9.0/sentimentr/man/kotzias_reviews_amazon_cells.Rd | 6 sentimentr-2.9.0/sentimentr/man/kotzias_reviews_imdb.Rd | 6 sentimentr-2.9.0/sentimentr/man/kotzias_reviews_yelp.Rd | 6 sentimentr-2.9.0/sentimentr/man/nyt_articles.Rd | 4 sentimentr-2.9.0/sentimentr/man/plot.emotion.Rd | 8 sentimentr-2.9.0/sentimentr/man/plot.profanity.Rd | 3 sentimentr-2.9.0/sentimentr/man/plot.sentiment.Rd | 3 sentimentr-2.9.0/sentimentr/man/presidential_debates_2012.Rd | 4 sentimentr-2.9.0/sentimentr/man/profanity.Rd | 15 - sentimentr-2.9.0/sentimentr/man/profanity_by.Rd | 8 sentimentr-2.9.0/sentimentr/man/reexports.Rd | 2 sentimentr-2.9.0/sentimentr/man/sam_i_am.Rd | 4 sentimentr-2.9.0/sentimentr/man/sentiment.Rd | 113 ++++++- sentimentr-2.9.0/sentimentr/man/sentiment_attributes.Rd | 7 sentimentr-2.9.0/sentimentr/man/sentiment_by.Rd | 14 sentimentr-2.9.0/sentimentr/man/sentimentr.Rd | 5 sentimentr-2.9.0/sentimentr/man/uncombine.Rd | 2 75 files changed, 652 insertions(+), 281 deletions(-)
Title: 'OpenID Connect' Discovery and Authentication
Description: Discover 'OpenID Connect' endpoints and authenticate
using device flow. Used by 'MOLGENIS' packages.
Author: Fleur Kelpin [aut] (<https://orcid.org/0000-0003-1527-5130>),
Tommy de Boer [aut] (<https://orcid.org/0000-0002-4492-7225>),
Sido Haakma [aut, cre] (<https://orcid.org/0000-0003-1278-9144>),
MOLGENIS org [cph, fnd]
Maintainer: Sido Haakma <s.haakma@rug.nl>
Diff between MolgenisAuth versions 0.0.14 dated 2020-11-06 and 0.0.18 dated 2021-10-12
DESCRIPTION | 19 +++++++++---------- MD5 | 8 ++++---- NEWS.md | 8 ++++++++ README.md | 5 ++--- man/MolgenisAuth-package.Rd | 4 ++-- 5 files changed, 25 insertions(+), 19 deletions(-)
Title: Armadillo Client for the Armadillo Service
Description: A set of functions to be able to manage data shared on a
'MOLGENIS Armadillo' storage server ('MinIO').
Author: Sido Haakma [aut, cre] (<https://orcid.org/0000-0003-1278-9144>),
Tommy de Boer [aut] (<https://orcid.org/0000-0002-4492-7225>),
Fleur Kelpin [aut] (<https://orcid.org/0000-0003-1527-5130>),
Morris Swertz [aut] (<https://orcid.org/0000-0002-0979-3401>)
Maintainer: Sido Haakma <s.haakma@rug.nl>
Diff between MolgenisArmadillo versions 1.0.1 dated 2021-02-08 and 1.0.3 dated 2021-10-12
DESCRIPTION | 20 - MD5 | 12 NEWS.md | 4 README.md | 4 inst/doc/MolgenisArmadillo.html | 604 ++++++++++++------------------------ inst/doc/creating_data_subsets.html | 454 +++++++-------------------- man/MolgenisArmadillo-package.Rd | 4 7 files changed, 365 insertions(+), 737 deletions(-)
More information about MolgenisArmadillo at CRAN
Permanent link
Title: 'DataSHIELD' Client for 'MOLGENIS Armadillo'
Description: 'DataSHIELD' is an infrastructure and series of R packages that
enables the remote and 'non-disclosive' analysis of sensitive research data.
This package is the 'DataSHIELD' interface implementation to analyze data
shared on a 'MOLGENIS Armadillo' server. 'MOLGENIS Armadillo' is a
light-weight 'DataSHIELD' server using a file store and an 'RServe' server.
Author: Sido Haakma [aut, cre] (<https://orcid.org/0000-0003-1278-9144>),
Tommy de Boer [aut] (<https://orcid.org/0000-0002-4492-7225>),
Fleur Kelpin [aut] (<https://orcid.org/0000-0003-1527-5130>),
MOLGENIS org [cph, fnd]
Maintainer: Sido Haakma <s.haakma@rug.nl>
Diff between DSMolgenisArmadillo versions 1.3.5 dated 2021-03-20 and 1.3.6 dated 2021-10-12
DESCRIPTION | 18 +++++++++--------- MD5 | 8 ++++---- NEWS.md | 2 ++ README.md | 5 ++--- man/DSMolgenisArmadillo-package.Rd | 4 ++-- 5 files changed, 19 insertions(+), 18 deletions(-)
More information about DSMolgenisArmadillo at CRAN
Permanent link
Title: Continuous Time Meta-Analysis ('CoTiMA')
Description: The 'CoTiMA' package performs meta-analyses of correlation matrices of repeatedly measured variables taken from
studies that used different time intervals. Different time intervals between measurement occasions impose problems for
meta-analyses because the effects (e.g. cross-lagged effects) cannot be simply aggregated, for example, by means of common
fixed or random effects analysis. However, continuous time math, which is applied in 'CoTiMA', can be used to extrapolate or
intrapolate the results from all studies to any desired time lag. By this, effects obtained in studies that used different
time intervals can be meta-analyzed. 'CoTiMA' fits models to empirical data using the structural equation model (SEM) package
'ctsem', the effects specified in a SEM are related to parameters that are not directly included in the model (i.e.,
continuous time parameters; together, they represent the continuous time structural equation model, CTSEM). Statistical
model comparisons and significance tests are then performed on the continuous time parameter estimates. 'CoTiMA' also allows
analysis of publication bias (Egger's test, PET-PEESE estimates, zcurve analysis etc.) and analysis of statistical power
(post hoc power, required sample sizes). See Dormann, C., Guthier, C., & Cortina, J. M. (2019) <doi:10.1177/1094428119847277>.
and Guthier, C., Dormann, C., & Voelkle, M. C. (2020) <doi:10.1037/bul0000304>.
Author: Christian Dormann [aut, cph],
Markus Homberg [aut, com, cre],
Christina Guthier [ctb],
Manuel Voelkle [ctb]
Maintainer: Markus Homberg <cotima@uni-mainz.de>
Diff between CoTiMA versions 0.4.3 dated 2021-09-02 and 0.4.4 dated 2021-10-12
CoTiMA-0.4.3/CoTiMA/R/ctmaModDrift.R |only CoTiMA-0.4.3/CoTiMA/man/ctmaModDrift.Rd |only CoTiMA-0.4.4/CoTiMA/DESCRIPTION | 8 CoTiMA-0.4.4/CoTiMA/MD5 | 14 - CoTiMA-0.4.4/CoTiMA/NAMESPACE | 2 CoTiMA-0.4.4/CoTiMA/R/ctmaInit.R | 179 ++++++++++++++++++--- CoTiMA-0.4.4/CoTiMA/R/ctmaPlot.R | 150 ++++++++++------- CoTiMA-0.4.4/CoTiMA/R/ctmaPower.R | 4 CoTiMA-0.4.4/CoTiMA/inst/doc/CoTiMA_User_Guide.pdf |binary 9 files changed, 265 insertions(+), 92 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-11-14 0.90.96
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-11-20 0.13.0
2014-02-24 0.12.0
2014-01-28 0.11.0
2014-01-02 0.10.0
2013-10-24 0.9-3
2013-10-21 0.9-2
2013-09-20 0.9-1
2013-07-26 0.9-0
2012-06-26 0.2-0
2012-06-11 0.1-0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-05-01 0.9.5
2020-01-13 0.9.4
Title: Multi-Way Component Analysis
Description: For single tensor data, any matrix factorization method can be specified the matricised tensor in each dimension by Multi-way Component Analysis (MWCA). An originally extended MWCA is also implemented to specify and decompose multiple matrices and tensors simultaneously (CoupledMWCA). See the reference section of GitHub README.md <https://github.com/rikenbit/mwTensor>, for details of the methods.
Author: Koki Tsuyuzaki [aut, cre]
Maintainer: Koki Tsuyuzaki <k.t.the-answer@hotmail.co.jp>
Diff between mwTensor versions 0.99.2 dated 2021-10-03 and 0.99.5 dated 2021-10-12
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- R/CoupledMWCA.R | 23 +++++++++++++++-------- R/mwTensor-internal.R | 1 - build/partial.rdb |binary inst/NEWS | 2 +- 6 files changed, 25 insertions(+), 19 deletions(-)
Title: 'systemPipeShiny' UI and Server Components
Description: The systemPipeShiny (SPS) framework comes with many UI and server components. However, installing the whole framework is heavy and takes some time. If you would like to use UI and server components from SPS in your own Shiny apps, do not hesitate to try this package.
Author: Le Zhang [aut, cre]
Maintainer: Le Zhang <lezhang100@gmail.com>
Diff between spsComps versions 0.3.0 dated 2021-05-18 and 0.3.1 dated 2021-10-12
DESCRIPTION | 12 +-- MD5 | 35 ++++----- NAMESPACE | 3 NEWS.md | 18 ++++ R/css_loader.R | 16 ++-- R/depend.R | 16 +++- R/font_awesome_animate.R | 14 ++- R/popover_tip.R | 8 +- R/spsServerCollections.R | 125 +++++++++++++++++++++++++++++++--- R/sps_timeline.R | 2 R/util.R | 29 +++++-- README.md | 9 +- inst/assets/js/sps_update_timeline.js | 1 man/addLoader.Rd | 13 +-- man/animateUI.Rd | 12 +-- man/incRv.Rd |only man/shinyCatch.Rd | 32 +++++++- man/spsTimeline.Rd | 2 man/spsValidate.Rd | 8 +- 19 files changed, 268 insertions(+), 87 deletions(-)
Title: Generalized Joint Attribute Modeling
Description: Analyzes joint attribute data (e.g., species abundance) that are combinations of continuous and discrete data with Gibbs sampling. Full model and computation details are described in Clark et al. (2018) <doi:10.1002/ecm.1241>.
Author: James S. Clark, Daniel Taylor-Rodriquez
Maintainer: James S. Clark <jimclark@duke.edu>
Diff between gjam versions 2.3.9 dated 2021-07-14 and 2.5 dated 2021-10-12
DESCRIPTION | 8 MD5 | 26 R/gjamHfunctions.R | 572 ++++++++++------- build/vignette.rds |binary inst/doc/gjamVignette.R | 385 ++++++----- inst/doc/gjamVignette.Rmd | 409 ++++++------ inst/doc/gjamVignette.html | 1451 ++++++++++++++++++++------------------------- man/gjam-package.Rd | 6 man/gjamIIE.Rd | 2 man/gjamPredict.Rd | 55 - man/gjamSensitivity.Rd | 2 man/gjamSpec2Trait.Rd | 3 src/RcppExports.cpp | 5 vignettes/gjamVignette.Rmd | 409 ++++++------ 14 files changed, 1722 insertions(+), 1611 deletions(-)
Title: Fast Extraction from Raster Datasets using Polygons
Description: Provides a replacement for the 'extract' function from the 'raster' package
that is suitable for extracting raster values using 'sf' polygons.
Author: Daniel Baston [aut, cre],
ISciences, LLC [cph]
Maintainer: Daniel Baston <dbaston@isciences.com>
Diff between exactextractr versions 0.7.0 dated 2021-09-10 and 0.7.1 dated 2021-10-12
DESCRIPTION | 6 +-- MD5 | 22 ++++++------ NEWS.md | 5 ++ R/exact_extract.R | 52 ++++++++++++++++-------------- R/exact_extract_helpers.R | 50 ++++++++++++++++++++++++++++ configure | 18 +++++----- configure.ac | 2 - man/exact_extract.Rd | 52 ++++++++++++++++-------------- src/coverage_fraction.cpp | 3 + src/raster_utils.cpp | 20 +++++------ src/resample.cpp | 3 + tests/testthat/test_exact_extract_terra.R | 11 ++++++ 12 files changed, 160 insertions(+), 84 deletions(-)