Title: Additive Partitions of Integers
Description: Additive partitions of integers. Enumerates the
partitions, unequal partitions, and restricted partitions of an
integer; the three corresponding partition functions are also
given. Set partitions and now compositions are included.
Author: Robin K. S. Hankin [aut, cre] (<https://orcid.org/0000-0001-5982-0415>),
Paul Egeler [ctb] (<https://orcid.org/0000-0001-6948-9498>)
Maintainer: Robin K. S. Hankin <hankin.robin@gmail.com>
Diff between partitions versions 1.10-2 dated 2021-02-23 and 1.10-4 dated 2021-10-23
partitions-1.10-2/partitions/inst/restrictedpartitionsgeneratingfunction.Rmd |only partitions-1.10-4/partitions/DESCRIPTION | 6 - partitions-1.10-4/partitions/MD5 | 31 +++--- partitions-1.10-4/partitions/R/partitions.R | 8 + partitions-1.10-4/partitions/README.md | 45 ++++----- partitions-1.10-4/partitions/build/partial.rdb |only partitions-1.10-4/partitions/build/partitions.pdf |binary partitions-1.10-4/partitions/build/vignette.rds |binary partitions-1.10-4/partitions/inst/doc/partitionspaper.pdf |binary partitions-1.10-4/partitions/inst/doc/scrabble.pdf |binary partitions-1.10-4/partitions/inst/doc/setpartitions.R | 21 ++++ partitions-1.10-4/partitions/inst/doc/setpartitions.Rnw | 47 ++++++++++ partitions-1.10-4/partitions/inst/doc/setpartitions.pdf |binary partitions-1.10-4/partitions/man/conjugate.Rd | 10 +- partitions-1.10-4/partitions/man/figures |only partitions-1.10-4/partitions/man/parts.Rd | 34 ++++++- partitions-1.10-4/partitions/man/setparts.Rd | 12 ++ partitions-1.10-4/partitions/vignettes/setpartitions.Rnw | 47 ++++++++++ 18 files changed, 211 insertions(+), 50 deletions(-)
Title: Isolation-Based Outlier Detection
Description: Fast and multi-threaded implementation of
isolation forest (Liu, Ting, Zhou (2008) <doi:10.1109/ICDM.2008.17>),
extended isolation forest (Hariri, Kind, Brunner (2018) <arXiv:1811.02141>),
SCiForest (Liu, Ting, Zhou (2010) <doi:10.1007/978-3-642-15883-4_18>),
and fair-cut forest (Cortes (2019) <arXiv:1911.06646>),
for isolation-based outlier detection, clustered outlier detection, distance or similarity
approximation (Cortes (2019) <arXiv:1910.12362>),
and imputation of missing values (Cortes (2019) <arXiv:1911.06646>),
based on random or guided decision tree splitting. Provides simple heuristics for fitting the model to
categorical columns and handling missing data, and offers options for varying between random and guided
splits, and for using different splitting criteria.
Author: David Cortes [aut, cre, cph],
Thibaut Goetghebuer-Planchon [cph] (Copyright holder of included
robinmap library),
David Blackman [cph] (Copyright holder of original Xoshiro code),
Sebastiano Vigna [cph] (Copyright holder of original Xoshiro code)
Maintainer: David Cortes <david.cortes.rivera@gmail.com>
Diff between isotree versions 0.3.0 dated 2021-08-22 and 0.3.9 dated 2021-10-23
isotree-0.3.0/isotree/inst |only isotree-0.3.0/isotree/src/Makevars |only isotree-0.3.0/isotree/src/robinmap/LICENSE |only isotree-0.3.9/isotree/DESCRIPTION | 8 isotree-0.3.9/isotree/LICENSE | 2 isotree-0.3.9/isotree/MD5 | 64 - isotree-0.3.9/isotree/NAMESPACE | 1 isotree-0.3.9/isotree/R/RcppExports.R | 28 isotree-0.3.9/isotree/R/helpers.R | 625 +++++++++--------- isotree-0.3.9/isotree/R/isoforest.R | 563 +++++++++++----- isotree-0.3.9/isotree/configure |only isotree-0.3.9/isotree/configure.ac |only isotree-0.3.9/isotree/configure.win |only isotree-0.3.9/isotree/man/isolation.forest.Rd | 146 +++- isotree-0.3.9/isotree/man/isotree.add.tree.Rd | 14 isotree-0.3.9/isotree/man/isotree.append.trees.Rd | 9 isotree-0.3.9/isotree/man/isotree.drop.imputer.Rd | 4 isotree-0.3.9/isotree/man/isotree.export.model.Rd | 7 isotree-0.3.9/isotree/man/isotree.import.model.Rd | 2 isotree-0.3.9/isotree/man/predict.isolation_forest.Rd | 20 isotree-0.3.9/isotree/src/Makevars.in |only isotree-0.3.9/isotree/src/RcppExports.cpp | 99 +- isotree-0.3.9/isotree/src/Rwrapper.cpp | 479 ++++++++----- isotree-0.3.9/isotree/src/crit.h | 96 +- isotree-0.3.9/isotree/src/dist.h | 7 isotree-0.3.9/isotree/src/extended.h | 170 ++++ isotree-0.3.9/isotree/src/fit_model.h | 52 + isotree-0.3.9/isotree/src/impute.h | 2 isotree-0.3.9/isotree/src/instantiate_model.h | 14 isotree-0.3.9/isotree/src/isoforest.h | 4 isotree-0.3.9/isotree/src/isotree-win.def |only isotree-0.3.9/isotree/src/isotree.h | 54 + isotree-0.3.9/isotree/src/mult.h | 171 ++++ isotree-0.3.9/isotree/src/predict.h | 245 ++++--- isotree-0.3.9/isotree/src/serialize.cpp | 259 +++++-- isotree-0.3.9/isotree/src/utils.h | 186 ++++- isotree-0.3.9/isotree/src/xoshiro.h | 38 - 37 files changed, 2274 insertions(+), 1095 deletions(-)
Title: Adrian Dusa's Miscellaneous
Description: Contains functions used across packages 'declared', 'DDIwR', 'mixed', 'QCA'
and 'venn'. Interprets and translates, factorizes and negates SOP - Sum of Products
expressions, for both binary and multi-value crisp sets, and extracts information
(set names, set values) from those expressions. Other functions perform various
other checks if possibly numeric (even if all numbers reside in a character vector)
and coerce to numeric, or check if the numbers are whole. It also offers, among
many others, a highly flexible recoding routine.
Author: Adrian Dusa [aut, cre, cph] (<https://orcid.org/0000-0002-3525-9253>)
Maintainer: Adrian Dusa <dusa.adrian@unibuc.ro>
Diff between admisc versions 0.18 dated 2021-09-01 and 0.19 dated 2021-10-23
DESCRIPTION | 8 +- MD5 | 41 +++++----- NAMESPACE | 3 R/asSOP.R |only R/checkMV.R | 24 +++--- R/checkValid.R |only R/compute.R | 13 ++- R/getInfo.R | 52 +++++++++++++ R/getLevels.R | 35 +++++++-- R/invert.R | 7 + R/mvSOP.R |only R/recreate.R | 2 R/replaceText.R | 21 +++-- R/simplify.R | 4 - R/translate.R | 185 ++++++++++++++++++++++++++++++++++++------------- R/verify.R | 14 ++- R/writePrimeimp.R | 50 ++++++++++--- build/partial.rdb |binary inst/ChangeLog | 9 +- man/SOPexpression.Rd | 148 +++++++++++++++++++++------------------ man/admisc-internal.Rd | 1 man/admisc.package.Rd | 4 - man/negate.Rd | 35 +++++---- 23 files changed, 451 insertions(+), 205 deletions(-)
Title: Data Sets for Predictive Analytics Exam
Description: Contains all data sets for Exam PA: Predictive Analytics at
<https://exampa.net/>.
Author: Guanglai Li [aut, cre],
Sam Castillo [aut]
Maintainer: Guanglai Li <liguanglai@gmail.com>
Diff between ExamPAData versions 0.4.0 dated 2021-05-26 and 0.5.0 dated 2021-10-23
DESCRIPTION | 8 ++++---- MD5 | 8 +++++++- R/travel_insurance.R |only R/travel_spending.R |only data/travel_insurance.RData |only data/travel_spending.RData |only man/travel_insurance.Rd |only man/travel_spending.Rd |only 8 files changed, 11 insertions(+), 5 deletions(-)
Title: R Bindings to the Calendaring Functionality of 'QuantLib'
Description: 'QuantLib' bindings are provided for R using 'Rcpp' via an updated
variant of the header-only 'Quantuccia' project (put together initially by Peter
Caspers) offering an essential subset of 'QuantLib' (and now maintained separately
for the calendaring subset). See the included file 'AUTHORS' for a full list of
contributors to both 'QuantLib' and 'Quantuccia'.
Author: Dirk Eddelbuettel; the authors and contributors of QuantLib
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppQuantuccia versions 0.0.4 dated 2021-10-12 and 0.0.5 dated 2021-10-23
RcppQuantuccia-0.0.4/RcppQuantuccia/inst/include/ql/compounding.hpp |only RcppQuantuccia-0.0.4/RcppQuantuccia/inst/include/ql/config.ansi.hpp |only RcppQuantuccia-0.0.4/RcppQuantuccia/inst/include/ql/config.mingw.hpp |only RcppQuantuccia-0.0.4/RcppQuantuccia/inst/include/ql/config.msvc.hpp |only RcppQuantuccia-0.0.4/RcppQuantuccia/inst/include/ql/config.sun.hpp |only RcppQuantuccia-0.0.4/RcppQuantuccia/inst/include/ql/currency.hpp |only RcppQuantuccia-0.0.4/RcppQuantuccia/inst/include/ql/handle.hpp |only RcppQuantuccia-0.0.4/RcppQuantuccia/inst/include/ql/math |only RcppQuantuccia-0.0.4/RcppQuantuccia/inst/include/ql/mathconstants.hpp |only RcppQuantuccia-0.0.4/RcppQuantuccia/inst/include/ql/methods |only RcppQuantuccia-0.0.4/RcppQuantuccia/inst/include/ql/patterns/curiouslyrecurring.hpp |only RcppQuantuccia-0.0.4/RcppQuantuccia/inst/include/ql/patterns/lazyobject.hpp |only RcppQuantuccia-0.0.4/RcppQuantuccia/inst/include/ql/stochasticprocess.hpp |only RcppQuantuccia-0.0.4/RcppQuantuccia/inst/include/ql/time/daycounter.hpp |only RcppQuantuccia-0.0.4/RcppQuantuccia/inst/include/ql/time/daycounters |only RcppQuantuccia-0.0.4/RcppQuantuccia/inst/include/ql/timegrid.hpp |only RcppQuantuccia-0.0.4/RcppQuantuccia/inst/include/ql/userconfig.hpp |only RcppQuantuccia-0.0.4/RcppQuantuccia/inst/include/ql/utilities/disposable.hpp |only RcppQuantuccia-0.0.4/RcppQuantuccia/inst/include/ql/utilities/steppingiterator.hpp |only RcppQuantuccia-0.0.4/RcppQuantuccia/inst/include/ql/utilities/vectors.hpp |only RcppQuantuccia-0.0.4/RcppQuantuccia/inst/include/ql/version.hpp |only RcppQuantuccia-0.0.5/RcppQuantuccia/ChangeLog | 78 ++ RcppQuantuccia-0.0.5/RcppQuantuccia/DESCRIPTION | 20 RcppQuantuccia-0.0.5/RcppQuantuccia/MD5 | 189 +------ RcppQuantuccia-0.0.5/RcppQuantuccia/NAMESPACE | 1 RcppQuantuccia-0.0.5/RcppQuantuccia/R/RcppExports.R | 13 RcppQuantuccia-0.0.5/RcppQuantuccia/README.md | 34 + RcppQuantuccia-0.0.5/RcppQuantuccia/build/partial.rdb |binary RcppQuantuccia-0.0.5/RcppQuantuccia/inst/NEWS.Rd | 10 RcppQuantuccia-0.0.5/RcppQuantuccia/inst/include/RcppQuantuccia_RcppExports.h | 65 ++ RcppQuantuccia-0.0.5/RcppQuantuccia/inst/include/ql/errors.hpp | 99 ++- RcppQuantuccia-0.0.5/RcppQuantuccia/inst/include/ql/patterns/all.hpp | 3 RcppQuantuccia-0.0.5/RcppQuantuccia/inst/include/ql/patterns/singleton.hpp | 216 +++----- RcppQuantuccia-0.0.5/RcppQuantuccia/inst/include/ql/qldefines.hpp | 36 - RcppQuantuccia-0.0.5/RcppQuantuccia/inst/include/ql/quantlib.hpp | 20 RcppQuantuccia-0.0.5/RcppQuantuccia/inst/include/ql/settings.hpp | 37 - RcppQuantuccia-0.0.5/RcppQuantuccia/inst/include/ql/shared_ptr.hpp |only RcppQuantuccia-0.0.5/RcppQuantuccia/inst/include/ql/time/all.hpp | 6 RcppQuantuccia-0.0.5/RcppQuantuccia/inst/include/ql/time/businessdayconvention.hpp | 4 RcppQuantuccia-0.0.5/RcppQuantuccia/inst/include/ql/time/calendar.hpp | 156 ++++- RcppQuantuccia-0.0.5/RcppQuantuccia/inst/include/ql/time/calendars/all.hpp | 1 RcppQuantuccia-0.0.5/RcppQuantuccia/inst/include/ql/time/calendars/bespokecalendar.hpp | 37 - RcppQuantuccia-0.0.5/RcppQuantuccia/inst/include/ql/time/calendars/brazil.hpp |only RcppQuantuccia-0.0.5/RcppQuantuccia/inst/include/ql/time/calendars/canada.hpp | 22 RcppQuantuccia-0.0.5/RcppQuantuccia/inst/include/ql/time/calendars/china.hpp | 85 ++- RcppQuantuccia-0.0.5/RcppQuantuccia/inst/include/ql/time/calendars/germany.hpp | 52 - RcppQuantuccia-0.0.5/RcppQuantuccia/inst/include/ql/time/calendars/japan.hpp | 63 +- RcppQuantuccia-0.0.5/RcppQuantuccia/inst/include/ql/time/calendars/jointcalendar.hpp | 56 +- RcppQuantuccia-0.0.5/RcppQuantuccia/inst/include/ql/time/calendars/nullcalendar.hpp | 8 RcppQuantuccia-0.0.5/RcppQuantuccia/inst/include/ql/time/calendars/target.hpp | 6 RcppQuantuccia-0.0.5/RcppQuantuccia/inst/include/ql/time/calendars/unitedkingdom.hpp | 96 +-- RcppQuantuccia-0.0.5/RcppQuantuccia/inst/include/ql/time/calendars/unitedstates.hpp | 40 - RcppQuantuccia-0.0.5/RcppQuantuccia/inst/include/ql/time/date.hpp | 80 ++- RcppQuantuccia-0.0.5/RcppQuantuccia/inst/include/ql/time/dategenerationrule.hpp | 15 RcppQuantuccia-0.0.5/RcppQuantuccia/inst/include/ql/time/ecb.hpp |only RcppQuantuccia-0.0.5/RcppQuantuccia/inst/include/ql/time/frequency.hpp | 2 RcppQuantuccia-0.0.5/RcppQuantuccia/inst/include/ql/time/imm.hpp | 10 RcppQuantuccia-0.0.5/RcppQuantuccia/inst/include/ql/time/period.hpp | 35 - RcppQuantuccia-0.0.5/RcppQuantuccia/inst/include/ql/time/schedule.hpp | 265 ++++++---- RcppQuantuccia-0.0.5/RcppQuantuccia/inst/include/ql/time/weekday.hpp | 6 RcppQuantuccia-0.0.5/RcppQuantuccia/inst/include/ql/utilities/all.hpp | 7 RcppQuantuccia-0.0.5/RcppQuantuccia/inst/include/ql/utilities/dataformatters.hpp | 8 RcppQuantuccia-0.0.5/RcppQuantuccia/inst/include/ql/utilities/dataparsers.hpp | 40 - RcppQuantuccia-0.0.5/RcppQuantuccia/inst/include/ql/utilities/null.hpp | 2 RcppQuantuccia-0.0.5/RcppQuantuccia/inst/include/ql/utilities/observablevalue.hpp | 6 RcppQuantuccia-0.0.5/RcppQuantuccia/man/getHolidays.Rd | 11 RcppQuantuccia-0.0.5/RcppQuantuccia/src/RcppExports.cpp | 87 +++ RcppQuantuccia-0.0.5/RcppQuantuccia/src/dates.cpp | 72 -- 68 files changed, 1260 insertions(+), 839 deletions(-)
More information about RcppQuantuccia at CRAN
Permanent link
Title: Text Mining for Bahasa Malaysia
Description: It is designed to work with text written in Bahasa Malaysia. We provide
functions and data sets that will make working with Bahasa Malaysia text much easier.
For word stemming in particular, we will look up the Malay words in a dictionary and
then proceed to remove "extra suffix" as explained in Khan, Rehman Ullah,
Fitri Suraya Mohamad, Muh Inam UlHaq, Shahren Ahmad Zadi Adruce,
Philip Nuli Anding, Sajjad Nawaz Khan, and Abdulrazak Yahya Saleh Al-Hababi
(2017) <https://ijrest.net/vol-4-issue-12.html> . This package includes
a dictionary of Malay words that may be used to perform word stemming.
Author: Zahier Nasrudin [aut, cre] (<https://orcid.org/0000-0002-7060-776X>)
Maintainer: Zahier Nasrudin <zahiernasrudin@gmail.com>
Diff between malaytextr versions 0.1.1 dated 2021-08-17 and 0.1.2 dated 2021-10-23
DESCRIPTION | 17 ++---- MD5 | 29 +++++----- NEWS.md | 72 ++++++++++++++++++++++++- R/malayrootwords.R | 2 R/malaystopwords.R |only R/stem.R | 116 ++++++++++++++++++++++------------------- README.md | 94 +++++++++++++++++++++++---------- data/malayrootwords.rda |binary data/malaystopwords.rda |only inst/doc/malaytextr.R | 9 ++- inst/doc/malaytextr.Rmd | 15 ++++- inst/doc/malaytextr.html | 37 +++++++++---- man/malayrootwords.Rd | 2 man/malaystopwords.Rd |only man/stem_malay.Rd | 21 ++++--- tests/testthat/test_function.r | 4 - vignettes/malaytextr.Rmd | 15 ++++- 17 files changed, 299 insertions(+), 134 deletions(-)
Title: Interactive Scatter Plot and Volcano Plot Labels
Description: Interactive labelling of scatter plots, volcano plots and
Manhattan plots using a 'shiny' and 'plotly' interface. Users can hover
over points to see where specific points are located and click points
on/off to easily label them. Labels can be dragged around the plot to place
them optimally. Plots can be exported directly to PDF for publication.
Author: Myles Lewis [aut, cre] (<https://orcid.org/0000-0001-9365-5345>),
Katriona Goldmann [aut] (<https://orcid.org/0000-0002-9073-6323>),
Cankut Cubuk [ctb] (<https://orcid.org/0000-0003-4646-0849>)
Maintainer: Myles Lewis <myles.lewis@qmul.ac.uk>
Diff between easylabel versions 0.1.0 dated 2021-10-05 and 0.2.2 dated 2021-10-23
DESCRIPTION | 21 +- MD5 | 33 ++- NAMESPACE | 8 NEWS.md | 11 + R/data.R |only R/easyVolcano.R | 230 ++++++++++++++++++++++++-- R/easylabel.R | 410 ++++++++++++++++++++++++++++++------------------ README.md | 18 +- data |only inst/doc/easylabel.R | 95 +++++++++-- inst/doc/easylabel.Rmd | 262 ++++++++++++++++++++++-------- inst/doc/easylabel.html | 177 ++++++++++++++++---- man/easyMAplot.Rd | 11 - man/easyManhattan.Rd |only man/easyVolcano.Rd | 15 + man/easylabel.Rd | 53 +++++- man/volc1.Rd |only man/volc2.Rd |only vignettes/easylabel.Rmd | 262 ++++++++++++++++++++++-------- vignettes/manhattan.png |only 20 files changed, 1181 insertions(+), 425 deletions(-)
Title: High-Dimensional Shrinkage Optimal Portfolios
Description: Constructs shrinkage estimators of high-dimensional mean-variance portfolios and performs
high-dimensional tests on optimality of a given portfolio. The techniques developed in
Bodnar et al. (2018) <doi:10.1016/j.ejor.2017.09.028>, Bodnar et al. (2019)
<doi:10.1109/TSP.2019.2929964>, Bodnar et al. (2020) <doi:10.1109/TSP.2020.3037369>
are central to the package. They provide simple and feasible estimators and tests for optimal
portfolio weights, which are applicable for 'large p and large n' situations where p is the
portfolio dimension (number of stocks) and n is the sample size. The package also includes tools
for constructing portfolios based on shrinkage estimators of the mean vector and covariance matrix
as well as a new Bayesian estimator for the Markowitz efficient frontier recently developed by
Bauder et al. (2021) <doi:10.1080/14697688.2020.1748214>.
Author: Taras Bodnar [aut] (<https://orcid.org/0000-0001-7855-8221>),
Solomiia Dmytriv [aut] (<https://orcid.org/0000-0003-1855-3044>),
Yarema Okhrin [aut] (<https://orcid.org/0000-0003-4704-5233>),
Dmitry Otryakhin [aut, cre] (<https://orcid.org/0000-0002-4700-7221>),
Nestor Parolya [aut] (<https://orcid.org/0000-0003-2147-2288>)
Maintainer: Dmitry Otryakhin <d.otryakhin.acad@protonmail.ch>
Diff between HDShOP versions 0.1.1 dated 2021-09-02 and 0.1.2 dated 2021-10-23
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ NEWS.md | 4 ++++ R/Matrix_shrink.R | 16 +++++++++++++--- R/random_cov_matrix.R | 2 +- build/partial.rdb |binary man/RandCovMtrx.Rd | 2 +- 7 files changed, 29 insertions(+), 15 deletions(-)
Title: Analysis of Parent-Specific DNA Copy Numbers
Description: Segmentation of allele-specific DNA copy number data and detection of regions with abnormal copy number within each parental chromosome. Both tumor-normal paired and tumor-only analyses are supported.
Author: Henrik Bengtsson [aut, cre, cph],
Pierre Neuvial [aut],
Venkatraman E. Seshan [aut],
Adam B. Olshen [aut],
Paul T. Spellman [aut],
Richard A. Olshen [aut],
Frank E Harrell Jr [ctb] (Weighted quantile estimator adopted from
Hmisc::wtd.quantile())
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between PSCBS versions 0.65.0 dated 2019-05-05 and 0.66.0 dated 2021-10-23
DESCRIPTION | 30 ++-- MD5 | 154 ++++++++++----------- NAMESPACE | 5 NEWS | 44 +++++- R/AbstractCBS.HCLUST.R | 2 R/AbstractCBS.PRUNE.R | 8 - R/AbstractCBS.R | 27 ++- R/AbstractCBS.REPORT.R | 6 R/AbstractCBS.RESTRUCT.R | 11 - R/CBS.CALL.R | 24 +-- R/CBS.EXTS.R | 6 R/CBS.PLOT,many.R | 2 R/CBS.PLOT.R | 4 R/CBS.R | 10 - R/CBS.RESTRUCT.R | 10 - R/CBS.joinSegments.R | 2 R/DNAcopy.EXTS.R | 4 R/NonPairedPSCBS.R | 10 - R/PSCBS.R | 2 R/PSCBS.RESTRUCT.R | 2 R/PairedPSCBS.BOOT.R | 14 - R/PairedPSCBS.BOOT.sets.R | 6 R/PairedPSCBS.CALL.R | 4 R/PairedPSCBS.EXTS.R | 8 - R/PairedPSCBS.PLOT,many.R | 4 R/PairedPSCBS.PLOT.R | 6 R/PairedPSCBS.PLOT2.R | 6 R/PairedPSCBS.R | 4 R/PairedPSCBS.RESTRUCT.R | 14 - R/PairedPSCBS.applyByRegion.R | 2 R/PairedPSCBS.callAB.R | 2 R/PairedPSCBS.callCopyNeutral.R | 12 - R/PairedPSCBS.callGNL.R | 6 R/PairedPSCBS.callLOH.R | 2 R/PairedPSCBS.estimateDeltaAB.R | 24 +-- R/PairedPSCBS.estimateDeltaLOH.R | 12 - R/PairedPSCBS.estimateKappa.R | 6 R/PairedPSCBS.extractSegmentDataByLocus.R | 2 R/PairedPSCBS.updateMeans.R | 6 R/findLargeGaps.R | 2 R/findNeutralCopyNumberState.R | 2 R/gapsToSegments.R | 4 R/installDNAcopy.R | 2 R/segmentByCBS.R | 22 +-- R/segmentByNonPairedPSCBS.R | 8 - R/segmentByPairedPSCBS.R | 44 +++--- R/testROH.R | 2 R/weightedQuantile.R | 85 +++++++++-- R/writeWIG.R | 2 README.md |only build/vignette.rds |binary inst/CITATION | 106 +++++++------- inst/WORDLIST |only inst/doc/CBS.pdf |binary inst/doc/CBS.tex.rsp | 4 inst/doc/PairedPSCBS.pdf |binary inst/doc/PairedPSCBS.tex.rsp | 6 man/AbstractCBS.Rd | 2 man/CBS.Rd | 2 man/NonPairedPSCBS.Rd | 2 man/PSCBS.Rd | 2 man/PairedPSCBS.Rd | 2 man/append.AbstractCBS.Rd | 2 man/bootstrapTCNandDHByRegion.PairedPSCBS.Rd | 2 man/estimateDeltaAB.PairedPSCBS.Rd | 2 man/estimateDeltaLOH.PairedPSCBS.Rd | 2 man/estimateDeltaLOHByMinC1ForNonAB.PairedPSCBS.Rd | 2 man/figures |only man/findNeutralCopyNumberState.Rd | 2 man/load.AbstractCBS.Rd | 2 man/save.AbstractCBS.Rd | 2 man/segmentByNonPairedPSCBS.Rd | 2 man/segmentByPairedPSCBS.Rd | 2 man/weightedQuantile.Rd | 8 - tests/segmentByCBS,futures.R | 8 - tests/segmentByPairedPSCBS,futures.R | 29 ++- tests/weightedQuantile.R |only vignettes/CBS.tex.rsp | 4 vignettes/PSCBS.bib | 6 vignettes/PairedPSCBS.tex.rsp | 6 80 files changed, 507 insertions(+), 376 deletions(-)
Title: Interface to 'Azure Resource Manager'
Description: A lightweight but powerful R interface to the 'Azure Resource Manager' REST API. The package exposes a comprehensive class framework and related tools for creating, updating and deleting 'Azure' resource groups, resources and templates. While 'AzureRMR' can be used to manage any 'Azure' service, it can also be extended by other packages to provide extra functionality for specific services. Part of the 'AzureR' family of packages.
Author: Hong Ooi [aut, cre],
Microsoft [cph]
Maintainer: Hong Ooi <hongooi73@gmail.com>
Diff between AzureRMR versions 2.4.2 dated 2021-06-03 and 2.4.3 dated 2021-10-23
AzureRMR |only 1 file changed
Title: Spatial Absorbing Markov Chains
Description: Implements functions for working with absorbing Markov chains. The
implementation is based on the framework described in "Toward a unified
framework for connectivity that disentangles movement and mortality in space
and time" by Fletcher et al. (2019) <doi:10.1111/ele.13333>, which applies
them to spatial ecology. This framework incorporates both resistance and
absorption with spatial absorbing Markov chains (SAMC) to provide several
short-term and long-term predictions for metrics related to connectivity in
landscapes. Despite the ecological context of the framework, this package
can be used in any application of absorbing Markov chains.
Author: Andrew Marx [aut, cre, cph] (<https://orcid.org/0000-0002-7456-1631>),
Robert Fletcher [ctb] (<https://orcid.org/0000-0003-1717-5707>),
Miguel Acevedo [ctb] (<https://orcid.org/0000-0002-8289-1497>),
Jorge Sefair [ctb] (<https://orcid.org/0000-0002-5887-8938>),
Chao Wang [ctb] (<https://orcid.org/0000-0003-2706-5122>)
Maintainer: Andrew Marx <andrewjmarx@ufl.edu>
Diff between samc versions 1.4.1 dated 2021-09-02 and 2.0.0 dated 2021-10-23
DESCRIPTION | 9 MD5 | 70 ++-- NEWS.md | 9 R/RcppExports.R | 4 R/cond_passage.R | 44 ++ R/dispersal.R | 6 R/generics.R | 11 R/samc-class.R | 8 R/samc.R | 212 ------------ R/zzz.R | 17 - build/vignette.rds |binary inst/doc/code-snippets.html | 225 +------------ inst/doc/data-disconnected.html | 221 +------------ inst/doc/example-maze-part1.R |only inst/doc/example-maze-part1.Rmd |only inst/doc/example-maze-part1.html |only inst/doc/overview.html | 247 ++------------ inst/doc/parallel.R |only inst/doc/parallel.Rmd |only inst/doc/parallel.html |only inst/doc/performance.Rmd | 2 inst/doc/performance.html | 188 ----------- inst/doc/troubleshooting.html | 303 +++-------------- inst/doc/tutorial-animations.html | 365 +++++---------------- inst/doc/tutorial-basic.html | 493 +++++++++-------------------- inst/doc/tutorial-ggplot.html | 429 +++++++------------------ inst/doc/tutorial-locations.html | 419 +++++++----------------- inst/doc/tutorial-multiple-absorption.html | 443 +++++++------------------- inst/doc/tutorial-temporal.html | 353 +++++--------------- man/cond_passage.Rd | 18 + man/samc-class.Rd | 8 man/samc.Rd | 74 ---- src/RcppExports.cpp | 11 src/dispersal.cpp | 114 ++++-- tests/testthat/test-cond_passage.R | 16 tests/testthat/test-dispersal.R | 13 tests/testthat/test-distribution.R | 2 vignettes/example-maze-part1.Rmd |only vignettes/parallel.Rmd |only vignettes/performance.Rmd | 2 40 files changed, 1146 insertions(+), 3190 deletions(-)
Title: Delaunay Triangulation and Dirichlet (Voronoi) Tessellation
Description: Calculates the Delaunay triangulation and the Dirichlet
or Voronoi tessellation (with respect to the entire plane) of
a planar point set. Plots triangulations and tessellations in
various ways. Clips tessellations to sub-windows. Calculates
perimeters of tessellations. Summarises information about
the tiles of the tessellation. Calculates the centroidal
Voronoi (Dirichlet) tessellation using Lloyd's algorithm.
Author: Rolf Turner
Maintainer: Rolf Turner <r.turner@auckland.ac.nz>
Diff between deldir versions 1.0-5 dated 2021-10-09 and 1.0-6 dated 2021-10-23
ChangeLog | 5 +++++ DESCRIPTION | 8 ++++---- MD5 | 10 ++++++---- R/deldir.R | 4 ++-- data/toyPattern.rda |only man/deldir.Rd | 8 +++----- man/toyPattern.Rd |only 7 files changed, 20 insertions(+), 15 deletions(-)
Title: A Bootstrap-Based Heterogeneity Test for Meta-Analysis
Description: Implements a bootstrap-based heterogeneity test for standardized mean differences (d), Fisher-transformed Pearson's correlations (r), and natural-logarithm-transformed odds ratio (or) in meta-analysis studies. Depending on the presence of moderators, this Monte Carlo based test can be implemented in the random- or mixed-effects model. This package uses rma() function from the R package 'metafor' to obtain parameter estimates and likelihoods, so installation of R package 'metafor' is required. This approach refers to the studies of Anscombe (1956) <doi:10.2307/2332926>, Haldane (1940) <doi:10.2307/2332614>, Hedges (1981) <doi:10.3102/10769986006002107>, Hedges & Olkin (1985, ISBN:978-0123363800), Silagy, Lancaster, Stead, Mant, & Fowler (2004) <doi:10.1002/14651858.CD000146.pub2>, Viechtbauer (2010) <doi:10.18637/jss.v036.i03>, and Zuckerman (1994, ISBN:978-0521432009).
Author: Ge Jiang [aut, cre],
Han Du [aut],
Zijun Ke [ctb]
Maintainer: Ge Jiang <gejiang2@illinois.edu>
Diff between boot.heterogeneity versions 1.1.2 dated 2021-01-07 and 1.1.5 dated 2021-10-23
DESCRIPTION | 9 - MD5 | 18 +- R/Internal.R | 46 ++++-- R/boot.d.R | 15 +- R/boot.fcor.R | 15 +- R/boot.lnOR.R | 15 +- build/vignette.rds |binary inst/doc/boot.heterogeneity.Rmd | 1 inst/doc/boot.heterogeneity.html | 277 +++++---------------------------------- vignettes/boot.heterogeneity.Rmd | 1 10 files changed, 118 insertions(+), 279 deletions(-)
More information about boot.heterogeneity at CRAN
Permanent link