Title: 'systemPipeShiny' Utility Functions
Description: The systemPipeShiny (SPS) framework comes with many useful utility functions. However, installing the whole framework is heavy and takes some time. If you like only a few useful utility functions from SPS, install this package is enough.
Author: Le Zhang [aut, cre]
Maintainer: Le Zhang <lezhang100@gmail.com>
Diff between spsUtil versions 0.2.1 dated 2021-10-29 and 0.2.2 dated 2021-10-30
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NEWS.md | 6 ++++++ R/spsUtil.R | 27 +++++++++++++++++---------- man/checkNameSpace.Rd | 15 +++++++-------- 5 files changed, 38 insertions(+), 26 deletions(-)
Title: Mapping Averaged Pairwise Information
Description: Mapping Averaged Pairwise Information (MAPI) is an
exploratory method providing graphical representations summarizing the
spatial variation of pairwise metrics (eg. distance, similarity
coefficient, ...) computed between georeferenced samples.
Author: Sylvain Piry [aut, cre] (<https://orcid.org/0000-0002-7717-7555>),
Thomas Campolunghi [aut],
Florent Cestier [aut],
Karine Berthier [aut] (<https://orcid.org/0000-0002-2260-7968>)
Maintainer: Sylvain Piry <sylvain.piry@inrae.fr>
Diff between mapi versions 1.0.1 dated 2019-10-22 and 1.0.3 dated 2021-10-30
DESCRIPTION | 24 ++++++++++++------------ MD5 | 34 ++++++++++++++++++---------------- NEWS.md | 7 +++++-- R/MAPI_CheckData.R | 3 +++ R/MAPI_RunOnGrid.R | 7 ++++--- R/mapi.R | 18 +++++++++++++----- build |only data/metric.rda |binary data/samples.rda |binary inst/WORDLIST | 12 ++++++++++++ man/MAPI_CheckData.Rd | 7 +++++-- man/MAPI_Plot.Rd | 18 +++++++++++++----- man/MAPI_Plot2.Rd | 18 +++++++++++++----- man/MAPI_RunAuto.Rd | 19 +++++++++++++++---- man/MAPI_RunOnGrid.Rd | 16 +++++++++++++--- man/MAPI_Tails.Rd | 2 +- man/mapi.Rd | 20 ++++++++++++++------ src/MAPI.cpp | 6 ++++-- src/code.cpp |only 19 files changed, 145 insertions(+), 66 deletions(-)
Title: Simulated Goodness-of-Fit Tests for Discrete Distributions
Description: Implements Monte Carlo simulations for
goodness-of-fit (GOF) tests for discrete distributions. This
includes tests based on the Chi-squared statistic, the
log-likelihood-ratio (G^2) statistic, the Freeman-Tukey
(Hellinger-distance) statistic, the Kolmogorov-Smirnov
statistic, the Cramer-von Mises statistic as described in
Choulakian, Lockhart and Stephens (1994) <doi:10.2307/3315828>,
and the root-mean-square statistic, see Perkins,
Tygert, and Ward (2011) <doi:10.1016/j.amc.2011.03.124>.
Author: Josh McCormick [aut, cre]
Maintainer: Josh McCormick <josh.mccormick@aya.yale.edu>
Diff between discretefit versions 0.1.0 dated 2021-10-25 and 0.1.1 dated 2021-10-30
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- NEWS.md | 4 ++++ README.md | 22 +++++++++++----------- inst/doc/package_introduction.Rmd | 2 +- inst/doc/package_introduction.html | 20 ++++++++++---------- src/statistics.cpp | 4 ++-- vignettes/package_introduction.Rmd | 2 +- 8 files changed, 39 insertions(+), 35 deletions(-)
Title: Distributed Gaussian Process Calculations
Description: Distributes Gaussian process calculations across nodes
in a distributed memory setting, using Rmpi. The bigGP class
provides high-level methods for maximum likelihood with normal data,
prediction, calculation of uncertainty (i.e., posterior covariance
calculations), and simulation of realizations. In addition, bigGP
provides an API for basic matrix calculations with distributed
covariance matrices, including Cholesky decomposition, back/forwardsolve,
crossproduct, and matrix multiplication.
Author: Christopher Paciorek [aut, cre],
Benjamin Lipshitz [aut],
Prabhat [ctb],
Cari Kaufman [ctb],
Tina Zhuo [ctb],
Rollin Thomas [ctb]
Maintainer: Christopher Paciorek <paciorek@stat.berkeley.edu>
Diff between bigGP versions 0.1-6 dated 2015-07-08 and 0.1-7 dated 2021-10-30
bigGP-0.1-6/bigGP/data/datalist |only bigGP-0.1-7/bigGP/DESCRIPTION | 10 +- bigGP-0.1-7/bigGP/MD5 | 34 ++++---- bigGP-0.1-7/bigGP/NEWS | 9 ++ bigGP-0.1-7/bigGP/README | 4 - bigGP-0.1-7/bigGP/build |only bigGP-0.1-7/bigGP/configure | 15 +++ bigGP-0.1-7/bigGP/configure.ac | 18 ++-- bigGP-0.1-7/bigGP/data/SN2011fe.rda |binary bigGP-0.1-7/bigGP/inst/CITATION | 5 - bigGP-0.1-7/bigGP/man/SN2011fe.Rd | 8 +- bigGP-0.1-7/bigGP/man/bigGP.Rd | 4 - bigGP-0.1-7/bigGP/man/krigeProblem-class.Rd | 4 - bigGP-0.1-7/bigGP/man/remoteCalcChol.Rd | 4 - bigGP-0.1-7/bigGP/man/remoteCrossProdMatSelf.Rd | 4 - bigGP-0.1-7/bigGP/man/remoteCrossProdMatVec.Rd | 4 - bigGP-0.1-7/bigGP/man/remoteForwardsolve.Rd | 4 - bigGP-0.1-7/bigGP/man/remoteMultChol.Rd | 4 - bigGP-0.1-7/bigGP/src/wrappers.c | 93 ++++++++++++++++++++++++ 19 files changed, 169 insertions(+), 55 deletions(-)
Title: Fast Fixed-Effects Estimations
Description: Fast and user-friendly estimation of econometric models with multiple fixed-effects. Includes ordinary least squares (OLS), generalized linear models (GLM) and the negative binomial.
The core of the package is based on optimized parallel C++ code, scaling especially well for large data sets. The method to obtain the fixed-effects coefficients is based on Berge (2018) <https://wwwen.uni.lu/content/download/110162/1299525/file/2018_13>.
Further provides tools to export and view the results of several estimations with intuitive design to cluster the standard-errors.
Author: Laurent Berge [aut, cre],
Sebastian Krantz [ctb],
Grant McDermott [ctb] (<https://orcid.org/0000-0001-7883-8573>)
Maintainer: Laurent Berge <laurent.berge@u-bordeaux.fr>
Diff between fixest versions 0.10.0 dated 2021-09-28 and 0.10.1 dated 2021-10-30
fixest-0.10.0/fixest/man/extraline_register.Rd |only fixest-0.10.1/fixest/DESCRIPTION | 12 fixest-0.10.1/fixest/MD5 | 105 fixest-0.10.1/fixest/NAMESPACE | 22 fixest-0.10.1/fixest/NEWS.md | 199 + fixest-0.10.1/fixest/R/ESTIMATION_FUNS.R | 115 fixest-0.10.1/fixest/R/Lagging.R | 88 fixest-0.10.1/fixest/R/MiscFuns.R | 2857 ++++++++++++++-- fixest-0.10.1/fixest/R/RcppExports.R | 8 fixest-0.10.1/fixest/R/VCOV.R | 94 fixest-0.10.1/fixest/R/coefplot.R | 11 fixest-0.10.1/fixest/R/etable.R | 244 - fixest-0.10.1/fixest/R/etable_aliases.R | 8 fixest-0.10.1/fixest/R/fixest_env.R | 48 fixest-0.10.1/fixest/R/fixest_multi.R | 30 fixest-0.10.1/fixest/R/onLoad.R | 4 fixest-0.10.1/fixest/R/test_fun.R | 75 fixest-0.10.1/fixest/build/vignette.rds |binary fixest-0.10.1/fixest/inst/doc/exporting_tables.Rmd | 2 fixest-0.10.1/fixest/inst/doc/exporting_tables.html | 43 fixest-0.10.1/fixest/inst/doc/fixest_walkthrough.R | 2 fixest-0.10.1/fixest/inst/doc/fixest_walkthrough.Rmd | 6 fixest-0.10.1/fixest/inst/doc/fixest_walkthrough.html | 182 - fixest-0.10.1/fixest/inst/doc/multiple_estimations.html | 102 fixest-0.10.1/fixest/inst/doc/standard_errors.Rmd | 4 fixest-0.10.1/fixest/inst/doc/standard_errors.html | 10 fixest-0.10.1/fixest/man/bin.Rd | 79 fixest-0.10.1/fixest/man/check_conv_feols.Rd |only fixest-0.10.1/fixest/man/demean.Rd | 10 fixest-0.10.1/fixest/man/dsb.Rd |only fixest-0.10.1/fixest/man/etable.Rd | 45 fixest-0.10.1/fixest/man/extralines_register.Rd |only fixest-0.10.1/fixest/man/feNmlm.Rd | 18 fixest-0.10.1/fixest/man/feglm.Rd | 18 fixest-0.10.1/fixest/man/femlm.Rd | 18 fixest-0.10.1/fixest/man/feols.Rd | 47 fixest-0.10.1/fixest/man/fixef.fixest.Rd | 16 fixest-0.10.1/fixest/man/fixest_startup_msg.Rd | 4 fixest-0.10.1/fixest/man/i.Rd | 19 fixest-0.10.1/fixest/man/n_unik.Rd |only fixest-0.10.1/fixest/man/osize.Rd |only fixest-0.10.1/fixest/man/sample_df.Rd |only fixest-0.10.1/fixest/man/setFixest_dict.Rd | 7 fixest-0.10.1/fixest/man/setFixest_fml.Rd | 5 fixest-0.10.1/fixest/man/setFixest_notes.Rd | 11 fixest-0.10.1/fixest/man/setFixest_nthreads.Rd | 9 fixest-0.10.1/fixest/man/ssc.Rd | 7 fixest-0.10.1/fixest/man/style.tex.Rd | 2 fixest-0.10.1/fixest/man/summary.fixest_multi.Rd | 4 fixest-0.10.1/fixest/man/vcov_hac.Rd | 12 fixest-0.10.1/fixest/man/xpd.Rd | 18 fixest-0.10.1/fixest/src/RcppExports.cpp | 26 fixest-0.10.1/fixest/src/misc_funs.cpp | 145 fixest-0.10.1/fixest/tests/fixest_tests.R | 87 fixest-0.10.1/fixest/vignettes/exporting_tables.Rmd | 2 fixest-0.10.1/fixest/vignettes/fixest_walkthrough.Rmd | 6 fixest-0.10.1/fixest/vignettes/standard_errors.Rmd | 4 57 files changed, 4071 insertions(+), 819 deletions(-)
Title: Simplify Connections to Database Sources
Description: Connecting to databases requires boilerplate code to specify
connection parameters and to set up sessions properly with the DBMS.
This package provides a simple tool to fill two purposes: abstracting
connection details, including secret credentials, out of your source
code and managing configuration for frequently-used database connections
in a persistent and flexible way, while minimizing requirements on the
runtime environment.
Author: Charles Bailey [aut, cre],
Hanieh Razzaghi [aut]
Maintainer: Charles Bailey <baileyc@chop.edu>
Diff between srcr versions 1.0.0 dated 2020-12-15 and 1.1.0 dated 2021-10-30
DESCRIPTION | 9 - MD5 | 33 ++-- NEWS.md |only R/config_files.R | 17 +- R/create_src.R | 14 + R/srcr.R | 2 README.md | 8 build/vignette.rds |binary inst/doc/Managing_data_sources.Rmd | 36 ++-- inst/doc/Managing_data_sources.html | 249 ++++--------------------------- man/find_config_files.Rd | 11 - man/srcr.Rd | 20 +- tests/testthat/config_etc/defaults_fun.R | 6 tests/testthat/test_config_defaults.R | 4 tests/testthat/test_post_connect.R | 20 +- tests/testthat/test_read_config.R | 2 tests/testthat/test_src_create.R | 4 vignettes/Managing_data_sources.Rmd | 36 ++-- 18 files changed, 174 insertions(+), 297 deletions(-)
Title: Secure Password Hashing
Description: Utilities for secure password hashing via the argon2 algorithm.
It is a relatively new hashing algorithm and is believed to be very secure.
The 'argon2' implementation included in the package is the reference
implementation. The package also includes some utilities that should be
useful for digest authentication, including a wrapper of 'blake2b'. For
similar R packages, see sodium and 'bcrypt'. See
<https://en.wikipedia.org/wiki/Argon2> or
<https://eprint.iacr.org/2015/430.pdf> for more information.
Author: Drew Schmidt [aut, cre]
Maintainer: Drew Schmidt <wrathematics@gmail.com>
Diff between argon2 versions 0.2-0 dated 2017-06-12 and 0.4-0 dated 2021-10-30
argon2-0.2-0/argon2/R/pw.r |only argon2-0.2-0/argon2/src/Makevars |only argon2-0.2-0/argon2/src/argon2.c |only argon2-0.4-0/argon2/ChangeLog | 8 argon2-0.4-0/argon2/DESCRIPTION | 8 argon2-0.4-0/argon2/LICENSE | 2 argon2-0.4-0/argon2/MD5 | 72 ++- argon2-0.4-0/argon2/R/pw_hash.r |only argon2-0.4-0/argon2/README.md | 15 argon2-0.4-0/argon2/cleanup | 2 argon2-0.4-0/argon2/configure |only argon2-0.4-0/argon2/configure.ac |only argon2-0.4-0/argon2/configure.win |only argon2-0.4-0/argon2/inst/CITATION | 13 argon2-0.4-0/argon2/man/hashing.Rd | 25 - argon2-0.4-0/argon2/src/Makevars.in |only argon2-0.4-0/argon2/src/Makevars.win |only argon2-0.4-0/argon2/src/argon2/argon2.c | 24 + argon2-0.4-0/argon2/src/argon2/bench.c |only argon2-0.4-0/argon2/src/argon2/blake2/blake2-impl.h | 8 argon2-0.4-0/argon2/src/argon2/blake2/blake2.h | 30 - argon2-0.4-0/argon2/src/argon2/blake2/blake2b.c | 6 argon2-0.4-0/argon2/src/argon2/blake2/blamka-round-opt.h | 299 ++++++++++++++- argon2-0.4-0/argon2/src/argon2/blake2/blamka-round-ref.h | 8 argon2-0.4-0/argon2/src/argon2/core.c | 75 ++- argon2-0.4-0/argon2/src/argon2/core.h | 16 argon2-0.4-0/argon2/src/argon2/encoding.c | 27 + argon2-0.4-0/argon2/src/argon2/encoding.h | 6 argon2-0.4-0/argon2/src/argon2/genkat.c |only argon2-0.4-0/argon2/src/argon2/genkat.h | 8 argon2-0.4-0/argon2/src/argon2/opt.c |only argon2-0.4-0/argon2/src/argon2/ref.c | 21 - argon2-0.4-0/argon2/src/argon2/run.c |only argon2-0.4-0/argon2/src/argon2/test.c |only argon2-0.4-0/argon2/src/argon2/thread.c | 10 argon2-0.4-0/argon2/src/argon2/thread.h | 12 argon2-0.4-0/argon2/src/argon2_native.c | 4 argon2-0.4-0/argon2/src/common.h | 14 argon2-0.4-0/argon2/src/gen_nonce.c | 2 argon2-0.4-0/argon2/src/pw_hash.c |only argon2-0.4-0/argon2/src/random_uchars.h |only argon2-0.4-0/argon2/tests/blake2b.R | 57 ++ argon2-0.4-0/argon2/tests/gen_nonce.R |only argon2-0.4-0/argon2/tests/pw_hash.R | 25 + argon2-0.4-0/argon2/tests/raw_as_char.R | 1 argon2-0.4-0/argon2/tools |only 46 files changed, 625 insertions(+), 173 deletions(-)
Title: Access Finnish Geospatial Data
Description: Tools for reading Finnish open geospatial data in R.
Author: Markus Kainu [aut, cre] (<https://orcid.org/0000-0003-1376-503X>),
Joona Lehtomaki [aut] (<https://orcid.org/0000-0002-7891-0843>),
Juuso Parkkinen [ctb] (<https://orcid.org/0000-0002-7818-5901>),
Jani Miettinen [ctb],
Pyry Kantanen [ctb],
Sampo Vesanen [ctb],
Leo Lahti [aut] (<https://orcid.org/0000-0001-5537-637X>)
Maintainer: Markus Kainu <markus.kainu@kapsi.fi>
Diff between geofi versions 1.0.4 dated 2021-08-18 and 1.0.5 dated 2021-10-30
geofi-1.0.4/geofi/man/figures/logo.svg |only geofi-1.0.5/geofi/DESCRIPTION | 64 +++----- geofi-1.0.5/geofi/MD5 | 35 ++-- geofi-1.0.5/geofi/NEWS.md | 6 geofi-1.0.5/geofi/README.md | 85 +++++------ geofi-1.0.5/geofi/data/municipality_key.rda |binary geofi-1.0.5/geofi/data/municipality_key_2018.rda |binary geofi-1.0.5/geofi/data/municipality_key_2019.rda |binary geofi-1.0.5/geofi/data/municipality_key_2020.rda |binary geofi-1.0.5/geofi/data/municipality_key_2021.rda |binary geofi-1.0.5/geofi/inst/doc/geofi_datasets.html | 46 ++--- geofi-1.0.5/geofi/inst/doc/geofi_joining_attribute_data.html | 6 geofi-1.0.5/geofi/inst/doc/geofi_making_maps.Rmd | 4 geofi-1.0.5/geofi/inst/doc/geofi_making_maps.html | 40 ++--- geofi-1.0.5/geofi/inst/doc/geofi_spatial_analysis.Rmd | 2 geofi-1.0.5/geofi/inst/doc/geofi_spatial_analysis.html | 18 +- geofi-1.0.5/geofi/man/figures/readme_map-1.png |binary geofi-1.0.5/geofi/vignettes/geofi_making_maps.Rmd | 4 geofi-1.0.5/geofi/vignettes/geofi_spatial_analysis.Rmd | 2 19 files changed, 155 insertions(+), 157 deletions(-)
Title: A Collection of Neural Networks
Description: Contains versions of Autoencoder, BP, LVQ, MAM NN and a module to define custom neural networks.
Author: Vasilis Nikolaidis [aut, cph, cre]
(<https://orcid.org/0000-0003-1471-8788>)
Maintainer: Vasilis Nikolaidis <vnikolaidis@us.uop.gr>
Diff between nnlib2Rcpp versions 0.1.7 dated 2021-05-05 and 0.1.8 dated 2021-10-30
DESCRIPTION | 6 +++--- MD5 | 12 +++++++----- build/partial.rdb |only build/vignette.rds |binary inst/CITATION | 28 ++++++++++++++-------------- inst/doc/manual.pdf |binary man/nnlib2Rcpp.Rd |only src/RcppExports.cpp | 5 +++++ 8 files changed, 29 insertions(+), 22 deletions(-)
Title: Get and Show Personal 'Google Scholar' Profile
Description: Provides functions to get personal 'Google Scholar'
profile data from web API and show it in table or figure format.
Author: Shixiang Wang [aut, cre] (<https://orcid.org/0000-0001-9855-7357>)
Maintainer: Shixiang Wang <w_shixiang@163.com>
Diff between tinyscholar versions 0.1.3 dated 2021-05-17 and 0.1.4 dated 2021-10-30
DESCRIPTION | 6 MD5 | 14 - NEWS.md | 4 R/scholar_search.R | 23 +- R/tidyscholar.R | 36 +++- build/vignette.rds |binary inst/doc/tinyscholar.html | 405 ++++++++++++++++++++++------------------------ man/tinyscholar.Rd | 15 + 8 files changed, 258 insertions(+), 245 deletions(-)
Title: Legislative Speeches
Description: Converts the floor speeches of Uruguayan legislators, extracted from the
parliamentary minutes, to tidy data.frame where each observation is the intervention of a single legislator.
Author: Nicolas Schmidt [aut, cre] (<https://orcid.org/0000-0001-5083-5792>),
Diego Lujan [aut],
Juan Andres Moraes [aut],
Elina Gomez [ctb]
Maintainer: Nicolas Schmidt <nschmidt@cienciassociales.edu.uy>
Diff between speech versions 0.1.3 dated 2021-09-08 and 0.1.4 dated 2021-10-30
DESCRIPTION | 10 ++-- MD5 | 12 ++-- NEWS.md | 5 ++ R/utils.R | 75 ++++++++++++++++++++++--------- README.md | 37 ++++++++------- man/figures/README-unnamed-chunk-2-1.png |binary man/figures/README-unnamed-chunk-3-1.png |binary 7 files changed, 91 insertions(+), 48 deletions(-)
Title: Parallel Use of Statistical Packages in Teaching
Description: When teaching statistics, it can often be desirable to
uncouple the content from specific software packages. To ease such
efforts, the Rosetta Stats website (<https://rosettastats.com>) allows
comparing analyses in different packages. This package is the companion
to the Rosetta Stats website, aiming to provide functions that produce
output that is similar to output from other statistical packages, thereby
facilitating 'software-agnostic' teaching of statistics.
Author: Gjalt-Jorn Peters [aut, cre] (<https://orcid.org/0000-0002-0336-9589>),
Ron Pat-El [ctb] (<https://orcid.org/0000-0002-4742-0163>),
Peter Verboon [ctb] (<https://orcid.org/0000-0001-8656-0890>),
Melissa Gordon Wolf [ctb] (<https://orcid.org/0000-0001-7677-0659>)
Maintainer: Gjalt-Jorn Peters <gjalt-jorn@behaviorchange.eu>
Diff between rosetta versions 0.3.6 dated 2021-03-29 and 0.3.8 dated 2021-10-30
DESCRIPTION | 16 +++--- MD5 | 35 ++++++++++---- NAMESPACE | 9 +++ R/ad.test_from_nortest.R |only R/dataShape.R |only R/descr.R | 4 - R/dlvPlot.R | 4 - R/examine.R |only R/examineBy.R |only R/fanova.R | 103 ++++++++++++++++++++++++++----------------- R/ggqq.R |only R/histogram.R | 14 ++++- R/logRegr.R | 24 +++++++--- R/normalHist.R |only R/normalityAssessment.R |only R/rMatrix.R |only R/samplingDistribution.R |only R/ufs_import_scatterMatrix.R | 4 - README.md | 12 +---- man/examine.Rd |only man/figures |only man/ggqq.Rd |only man/histogram.Rd | 11 ++++ man/rMatrix.Rd |only man/scatterMatrix.Rd | 4 - 25 files changed, 155 insertions(+), 85 deletions(-)
Title: R Bindings to the Calendaring Functionality of 'QuantLib'
Description: 'QuantLib' bindings are provided for R using 'Rcpp' via an updated
variant of the header-only 'Quantuccia' project (put together initially by Peter
Caspers) offering an essential subset of 'QuantLib' (and now maintained separately
for the calendaring subset). See the included file 'AUTHORS' for a full list of
contributors to both 'QuantLib' and 'Quantuccia'.
Author: Dirk Eddelbuettel; the authors and contributors of QuantLib
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppQuantuccia versions 0.0.5 dated 2021-10-23 and 0.1.0 dated 2021-10-30
RcppQuantuccia-0.0.5/RcppQuantuccia/inst/include/ql |only RcppQuantuccia-0.1.0/RcppQuantuccia/ChangeLog | 35 + RcppQuantuccia-0.1.0/RcppQuantuccia/DESCRIPTION | 8 RcppQuantuccia-0.1.0/RcppQuantuccia/MD5 | 207 +++++++--- RcppQuantuccia-0.1.0/RcppQuantuccia/NAMESPACE | 3 RcppQuantuccia-0.1.0/RcppQuantuccia/R/RcppExports.R | 19 RcppQuantuccia-0.1.0/RcppQuantuccia/R/calendars.R |only RcppQuantuccia-0.1.0/RcppQuantuccia/README.md | 109 ++++- RcppQuantuccia-0.1.0/RcppQuantuccia/build/partial.rdb |binary RcppQuantuccia-0.1.0/RcppQuantuccia/cleanup | 3 RcppQuantuccia-0.1.0/RcppQuantuccia/inst/NEWS.Rd | 8 RcppQuantuccia-0.1.0/RcppQuantuccia/inst/include/RcppQuantuccia_RcppExports.h | 42 ++ RcppQuantuccia-0.1.0/RcppQuantuccia/inst/include/RcppQuantuccia_as_wrap.h | 17 RcppQuantuccia-0.1.0/RcppQuantuccia/inst/include/RcppQuantuccia_declarations.h | 4 RcppQuantuccia-0.1.0/RcppQuantuccia/inst/include/RcppQuantuccia_types.h | 187 +++++++-- RcppQuantuccia-0.1.0/RcppQuantuccia/man/calendars.Rd |only RcppQuantuccia-0.1.0/RcppQuantuccia/man/getName.Rd |only RcppQuantuccia-0.1.0/RcppQuantuccia/src/Makevars | 74 +++ RcppQuantuccia-0.1.0/RcppQuantuccia/src/RcppExports.cpp | 72 +++ RcppQuantuccia-0.1.0/RcppQuantuccia/src/dates.cpp | 25 + RcppQuantuccia-0.1.0/RcppQuantuccia/src/ql |only RcppQuantuccia-0.1.0/RcppQuantuccia/src/utils.cpp | 5 22 files changed, 710 insertions(+), 108 deletions(-)
More information about RcppQuantuccia at CRAN
Permanent link
Title: Graphic Devices Based on AGG
Description: Anti-Grain Geometry (AGG) is a high-quality and high-performance
2D drawing library. The 'ragg' package provides a set of graphic devices
based on AGG to use as alternative to the raster devices provided through
the 'grDevices' package.
Author: Thomas Lin Pedersen [cre, aut]
(<https://orcid.org/0000-0002-5147-4711>),
Maxim Shemanarev [aut, cph] (Author of AGG),
Tony Juricic [ctb, cph] (Contributor to AGG),
Milan Marusinec [ctb, cph] (Contributor to AGG),
Spencer Garrett [ctb] (Contributor to AGG),
RStudio [cph]
Maintainer: Thomas Lin Pedersen <thomas.pedersen@rstudio.com>
Diff between ragg versions 1.1.3 dated 2021-06-09 and 1.2.0 dated 2021-10-30
DESCRIPTION | 8 MD5 | 48 + NEWS.md | 15 README.md | 23 configure | 2 man/figures/README-unnamed-chunk-3-1.png |binary man/figures/README-unnamed-chunk-4-1.png |binary src/AggDevice.h | 761 ++++++++++++++++++++++--------- src/AggDevice16.h | 5 src/AggDeviceCapture.h | 5 src/AggDeviceJpeg.h | 8 src/AggDevicePng.h | 10 src/AggDevicePpm.h | 8 src/AggDeviceTiff.h | 5 src/RenderBuffer.h |only src/agg/include/agg_span_gradient.h | 18 src/agg/src/agg_font_freetype.cpp | 24 src/files.h |only src/init_device.h | 82 ++- src/jpeg_dev.cpp | 5 src/pattern.h |only src/png_dev.cpp | 18 src/ppm_dev.cpp | 5 src/ragg.h | 5 src/rendering.h |only src/text_renderer.h | 66 -- src/tiff_dev.cpp | 12 27 files changed, 767 insertions(+), 366 deletions(-)
Title: Maps of Peru
Description: Geographic information of the departmental and regional boundaries of Peru.
Author: Jorge L. C. Musaja [aut, cre]
Maintainer: Jorge L. C. Musaja <musajajorge@gmail.com>
Diff between mapsPERU versions 0.1.2 dated 2021-10-26 and 0.1.3 dated 2021-10-30
DESCRIPTION | 6 +++--- MD5 | 26 +++++++++++++------------- R/boundaries_DEP.R | 10 +++++----- R/boundaries_REG.R | 10 +++++----- R/centroids_DEP.R | 9 +++++---- R/centroids_REG.R | 9 +++++---- data/boundaries_DEP.rda |binary data/boundaries_REG.rda |binary data/centroids_DEP.rda |binary data/centroids_REG.rda |binary man/boundaries_DEP.Rd | 10 +++++----- man/boundaries_REG.Rd | 10 +++++----- man/centroids_DEP.Rd | 9 +++++---- man/centroids_REG.Rd | 9 +++++---- 14 files changed, 56 insertions(+), 52 deletions(-)
Title: Comprehensive Statistical Analysis of Plant Breeding Experiments
Description: Performs statistical data analysis of various Plant Breeding experiments. Contains functions for Line by Tester analysis as per Arunachalam, V.(1974) <http://repository.ias.ac.in/89299/> and Diallel analysis as per Griffing, B. (1956) <https://www.publish.csiro.au/bi/pdf/BI9560463>.
Author: Nandan Patil [cre, aut] (<https://orcid.org/0000-0003-0100-9931>),
Lakshmi R. Gangavati [aut, ctb]
Maintainer: Nandan Patil <tryanother609@gmail.com>
Diff between gpbStat versions 0.3.4 dated 2021-08-10 and 0.3.5 dated 2021-10-30
DESCRIPTION | 12 +++++++----- MD5 | 22 ++++++++++++++++++---- NAMESPACE | 4 ++++ R/check.R |only R/hcc.R |only R/hybrid.R |only R/sysdata.rda |binary R/utils-pipe.R |only build/vignette.rds |binary data/check.rda |only data/hybrid.rda |only inst/doc/hcc.R |only inst/doc/hcc.Rmd |only inst/doc/hcc.html |only man/check.Rd |only man/hcc.Rd |only man/hybrid.Rd |only man/pipe.Rd |only vignettes/hcc.Rmd |only 19 files changed, 29 insertions(+), 9 deletions(-)
Title: Chandler-Bate Sandwich Loglikelihood Adjustment
Description: Performs adjustments of a user-supplied independence loglikelihood
function using a robust sandwich estimator of the parameter covariance
matrix, based on the methodology in Chandler and Bate (2007)
<doi:10.1093/biomet/asm015>. This can be used for cluster correlated data
when interest lies in the parameters of the marginal distributions or for
performing inferences that are robust to certain types of model
misspecification. Functions for profiling the adjusted loglikelihoods are
also provided, as are functions for calculating and plotting confidence
intervals, for single model parameters, and confidence regions, for pairs
of model parameters. Nested models can be compared using an adjusted
likelihood ratio test.
Author: Paul J. Northrop [aut, cre, cph],
Richard E. Chandler [aut, cph]
Maintainer: Paul J. Northrop <p.northrop@ucl.ac.uk>
Diff between chandwich versions 1.1.4 dated 2021-07-02 and 1.1.5 dated 2021-10-30
DESCRIPTION | 11 ++++++----- MD5 | 19 ++++++++++--------- NEWS.md | 6 ++++++ README.md | 2 +- build/partial.rdb |binary build/vignette.rds |binary inst/doc/chandwich-vignette.Rmd | 1 + inst/doc/chandwich-vignette.html | 14 +++++++------- vignettes/chandwich-vignette.Rmd | 1 + vignettes/chandwich.bib | 7 ++----- vignettes/taylor-and-francis-chicago-author-date.csl |only 11 files changed, 34 insertions(+), 27 deletions(-)
Title: Generate High-Resolution Venn and Euler Plots
Description: A set of functions to generate high-resolution Venn and Euler plots. Includes handling for several special cases, including two-case scaling, and extensive customization of plot shape and structure.
Author: Hanbo Chen
Maintainer: Paul Boutros <pboutros@mednet.ucla.edu>
Diff between VennDiagram versions 1.6.20 dated 2018-03-28 and 1.7.0 dated 2021-10-30
VennDiagram-1.6.20/VennDiagram/R/partitionText.R |only VennDiagram-1.6.20/VennDiagram/inst |only VennDiagram-1.7.0/VennDiagram/DESCRIPTION | 10 VennDiagram-1.7.0/VennDiagram/MD5 | 75 +-- VennDiagram-1.7.0/VennDiagram/NAMESPACE | 3 VennDiagram-1.7.0/VennDiagram/NEWS | 20 + VennDiagram-1.7.0/VennDiagram/R/decide.special.case.R | 2 VennDiagram-1.7.0/VennDiagram/R/draw.pairwise.venn.R | 228 +++++------ VennDiagram-1.7.0/VennDiagram/R/draw.quad.venn.R | 158 ++++---- VennDiagram-1.7.0/VennDiagram/R/draw.quintuple.venn.R | 192 +++++----- VennDiagram-1.7.0/VennDiagram/R/draw.single.venn.R | 106 ++--- VennDiagram-1.7.0/VennDiagram/R/draw.sp.case.R | 38 - VennDiagram-1.7.0/VennDiagram/R/draw.sp.case.preprocess.R | 56 +- VennDiagram-1.7.0/VennDiagram/R/draw.sp.case.scaled.R | 64 +-- VennDiagram-1.7.0/VennDiagram/R/draw.triple.venn.R | 178 ++++----- VennDiagram-1.7.0/VennDiagram/R/flip.venn.R | 2 VennDiagram-1.7.0/VennDiagram/R/get.venn.partitions.R |only VennDiagram-1.7.0/VennDiagram/R/make.truth.table.R |only VennDiagram-1.7.0/VennDiagram/R/venn.diagram.R | 38 + VennDiagram-1.7.0/VennDiagram/man/VennDiagram-package.Rd | 2 VennDiagram-1.7.0/VennDiagram/man/draw.pairwise.venn.Rd | 8 VennDiagram-1.7.0/VennDiagram/man/draw.quad.venn.Rd | 9 VennDiagram-1.7.0/VennDiagram/man/draw.quintuple.venn.Rd | 9 VennDiagram-1.7.0/VennDiagram/man/draw.single.venn.Rd | 9 VennDiagram-1.7.0/VennDiagram/man/draw.triple.venn.Rd | 9 VennDiagram-1.7.0/VennDiagram/man/get.venn.partitions.Rd | 4 VennDiagram-1.7.0/VennDiagram/man/make.truth.table.Rd | 2 VennDiagram-1.7.0/VennDiagram/man/venn.diagram.Rd | 230 +++++++----- VennDiagram-1.7.0/VennDiagram/tests/test-all.R | 2 VennDiagram-1.7.0/VennDiagram/tests/testthat/test-Five.R | 40 +- VennDiagram-1.7.0/VennDiagram/tests/testthat/test-Four.R | 42 +- VennDiagram-1.7.0/VennDiagram/tests/testthat/test-Log.R |only VennDiagram-1.7.0/VennDiagram/tests/testthat/test-One.R | 46 +- VennDiagram-1.7.0/VennDiagram/tests/testthat/test-Three.R | 43 +- VennDiagram-1.7.0/VennDiagram/tests/testthat/test-Two.R | 48 +- VennDiagram-1.7.0/VennDiagram/tests/testthat/testFunction.R | 87 ++-- 36 files changed, 945 insertions(+), 815 deletions(-)
Title: REST API Client for the 'PGS' Catalog
Description: Programmatic access to the 'PGS' Catalog.
This package provides easy access to 'PGS' Catalog data by
accessing the REST API <https://www.pgscatalog.org/rest/>.
Author: Ramiro Magno [aut, cre] (<https://orcid.org/0000-0001-5226-3441>),
Isabel Duarte [aut] (<https://orcid.org/0000-0003-0060-2936>),
Ana-Teresa Maia [aut] (<https://orcid.org/0000-0002-0454-9207>),
CINTESIS [cph, fnd]
Maintainer: Ramiro Magno <ramiro.magno@gmail.com>
Diff between quincunx versions 0.1.2 dated 2021-10-29 and 0.1.4 dated 2021-10-30
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- R/read_pgs_scoring_file.R | 8 ++++---- build/partial.rdb |binary man/read_scoring_file.Rd | 8 ++++---- 5 files changed, 15 insertions(+), 15 deletions(-)
Title: Tools for Spatial Data
Description: For curve, surface and function fitting with an emphasis
on splines, spatial data, geostatistics, and spatial statistics. The major methods
include cubic, and thin plate splines, Kriging, and compactly supported
covariance functions for large data sets. The splines and Kriging methods are
supported by functions that can determine the smoothing parameter
(nugget and sill variance) and other covariance function parameters by cross
validation and also by restricted maximum likelihood. For Kriging
there is an easy to use function that also estimates the correlation
scale (range parameter). A major feature is that any covariance function
implemented in R and following a simple format can be used for
spatial prediction. There are also many useful functions for plotting
and working with spatial data as images. This package also contains
an implementation of sparse matrix methods for large spatial data
sets and currently requires the sparse matrix (spam) package. Use
help(fields) to get started and for an overview. The fields source
code is deliberately commented and provides useful explanations of
numerical details as a companion to the manual pages. The commented
source code can be viewed by expanding the source code version
and looking in the R subdirectory. The reference for fields can be generated
by the citation function in R and has DOI <doi:10.5065/D6W957CT>. Development
of this package was supported in part by the National Science Foundation Grant
1417857, the National Center for Atmospheric Research, and Colorado School of Mines.
See the Fields URL
for a vignette on using this package and some background on spatial statistics.
Author: Douglas Nychka [aut, cre],
Reinhard Furrer [aut],
John Paige [aut],
Stephan Sain [aut],
Florian Gerber [aut],
Matthew Iverson [aut],
University Corporation for Atmospheric Research [cph]
Maintainer: Douglas Nychka <douglasnychka@gmail.com>
Diff between fields versions 12.5 dated 2021-06-25 and 13.3 dated 2021-10-30
DESCRIPTION | 10 MD5 | 666 ++++++++++++++++----------------- R/BD.R | 13 R/ChicagoO3.R | 13 R/Exponential.R | 13 R/ExponentialUpper.R | 13 R/Krig.R | 22 + R/Krig.family.R | 13 R/KrigFindLambda.R | 13 R/Matern.R | 13 R/Matern.parameters.R | 13 R/QSreg.R | 13 R/QTps.R | 13 R/RMprecip.R | 13 R/RadialBasis.R | 13 R/RdistEarth.R | 76 +-- R/SUBSCRIPTINGSpatialDesign.R | 13 R/Tps.R | 13 R/US.R | 13 R/add.image.R | 13 R/addColorBarTriangle.R | 23 + R/addLegend.R | 21 + R/arrow.plot.R | 13 R/as.image.R | 13 R/as.surface.R | 13 R/bisection.search.R | 13 R/bplot.family.R | 13 R/bubblePlot.R | 26 + R/cat.matrix.R | 13 R/cat.to.list.R | 13 R/ceiling2.R | 13 R/circulantEmbedding.R | 13 R/circulantEmbeddingSetup.R | 54 +- R/coef.Krig.R | 13 R/color.scale.R | 13 R/colorBar.R | 21 + R/colorbar.plot.R | 13 R/compactToMat.R | 13 R/confidenceIntervalMLE.R | 29 + R/cover.design.R | 13 R/cubic.cov.R | 13 R/describe.R | 13 R/discretize.image.R | 13 R/double.exp.R | 13 R/drape.color.R | 13 R/drape.plot.R | 13 R/dyadic.2check.R | 13 R/dyadic.check.R | 13 R/envelopePlot.R | 21 + R/evlpoly.R | 13 R/evlpoly2.R | 13 R/exp.cov.R | 13 R/exp.earth.cov.R | 13 R/exp.image.cov.R | 13 R/exp.simple.cov.R | 13 R/fast.1way.R | 13 R/fastTps.R | 21 + R/fields.color.picker.R | 13 R/fields.convert.grid.R | 13 R/fields.derivative.poly.R | 13 R/fields.duplicated.matrix.R | 13 R/fields.mkpoly.R | 13 R/fields.rdist.near.R | 13 R/fields.style.R | 13 R/fields.x.to.grid.R | 13 R/find.upcross.R | 13 R/fitted.Krig.R | 13 R/flame.R | 13 R/gauss.cov.R | 13 R/gcv.sreg.R | 13 R/golden.section.search.R | 13 R/image.family.R | 13 R/image.plot.R | 13 R/image.smooth.R | 13 R/imagePlot.R | 13 R/in.poly.R | 13 R/interp.surface.R | 13 R/interp.surface.grid.R | 13 R/larry.colors.R | 13 R/mKrig.R | 101 +++-- R/mKrigCheckXY.R | 11 R/mKrigMLEGrid.R | 21 - R/mKrigMLEJoint.R | 35 + R/mKrigMisc.R | 36 + R/make.surface.grid.R | 13 R/makeMultiIndex.R | 21 + R/matern.image.cov.R | 13 R/minimax.crit.R | 13 R/minitri.R | 13 R/multWendlandGrid.R | 13 R/offGridWeights.R |only R/parse.grid.list.R | 13 R/plot.Krig.R | 13 R/plot.spatialDesign.R | 13 R/plot.spatialProcess.R | 13 R/plot.sreg.R | 13 R/plot.surface.R | 13 R/plot.vgram.matrix.R | 13 R/poly.image.R | 13 R/predict.Krig.R | 13 R/predict.fastTps.R | 13 R/predict.interp.surface.R | 13 R/predict.mKrig.R | 21 + R/predict.sreg.R | 13 R/predictDerivative.Krig.R | 13 R/predictSE.Krig.R | 22 + R/predictSE.R | 13 R/predictSE.mKrig.R | 21 + R/predictSEUsingKrigA.R | 13 R/predictSurface.Krig.R | 60 +- R/predictSurface.family.R | 13 R/predictSurfaceSE.R | 13 R/print.Krig.R | 13 R/print.mKrig.R | 21 + R/print.mKrig.summary.R | 21 + R/print.spatial.design.R | 13 R/print.spatialProcess.R | 15 R/print.spatialProcessSummary.R | 15 R/print.sreg.R | 13 R/print.summary.Krig.R | 13 R/print.summary.sreg.R | 13 R/print.summarySpatialDesign.R | 13 R/printGCVWarnings.R | 13 R/profile.R | 17 R/profileCI.R | 21 + R/profileMLE.R | 21 + R/qr.q2ty.R | 13 R/qr.yq2.R | 13 R/qsreg.family.R | 13 R/quickPrint.R | 13 R/quilt.plot.R | 17 R/rad.cov.R | 13 R/rad.image.cov.R | 13 R/rad.simple.cov.R | 13 R/radbas.constant.R | 13 R/rat.diet.R | 13 R/rdist.R | 13 R/rdist.earth.R | 13 R/rdist.earth.vec.R | 13 R/rdist.vec.R | 13 R/residuals.Krig.R | 13 R/ribbon.plot.R | 13 R/set.panel.R | 13 R/setup.image.smooth.R | 13 R/setupLegend.R | 24 + R/sim.Krig.R | 13 R/sim.Krig.approx.R | 13 R/sim.mKrig.approx.R | 13 R/sim.rf.R | 13 R/sim.spatialProcess.R | 13 R/simLocal.mKrig.R |only R/simSpatialData.R | 17 R/smooth.2d.R | 13 R/snow.colors.R | 27 + R/spam_2lz.R | 13 R/spatialProcess.R | 56 ++ R/spatialProcessSetDefaults.R | 21 + R/splint.R | 13 R/sreg.family.R | 13 R/stationary.cov.R | 13 R/stationary.image.cov.R | 13 R/stationary.taper.cov.R | 13 R/stats.R | 13 R/stats.bin.R | 13 R/summary.Krig.R | 13 R/summary.mKrig.R | 21 + R/summary.ncdf.R | 13 R/summary.spatialDesign.R | 13 R/summary.spatialProcess.R | 15 R/summary.sreg.R | 13 R/summaryGCV.Krig.R | 13 R/summaryGCV.sreg.R | 13 R/supportsArg.R | 13 R/surface.family.R | 17 R/temp.R |only R/test.for.zero.R | 13 R/tim.colors.R | 13 R/transformx.R | 13 R/unrollZGrid.R | 13 R/unscale.R | 13 R/vgram.family.R | 13 R/vgram.matrix.R | 13 R/wendland.family.R | 13 R/wendland.image.cov.R | 13 R/which.max.matrix.R | 13 R/world.R | 13 R/xline.R | 13 R/yline.R | 13 inst/CITATION | 5 man/BD.Rd | 13 man/CO.Rd | 13 man/CO2.Rd | 13 man/CovarianceUpper.Rd | 13 man/Exponential.Rd | 13 man/FORTRAN.internal.Rd | 13 man/Krig.Amatrix.Rd | 13 man/Krig.Rd | 13 man/Krig.engine.default.Rd | 13 man/Krig.null.function.Rd | 13 man/Krig.replicates.Rd | 13 man/KrigFindLambda.Rd | 13 man/NorthAmericanRainfall.Rd | 15 man/QTps.Rd | 29 - man/RCMexample.Rd | 13 man/RMprecip.Rd | 13 man/Tps.Rd | 15 man/US.Rd | 13 man/US.dat.Rd | 13 man/Wendland.Rd | 13 man/WorldBank.Rd | 13 man/add.image.Rd | 13 man/arrow.plot.Rd | 13 man/as.image.Rd | 13 man/as.surface.Rd | 13 man/bplot.Rd | 13 man/bplot.xy.Rd | 13 man/colorbar.plot.Rd | 13 man/compactToMat.Rd | 13 man/cover.design.Rd | 13 man/drape.plot.Rd | 13 man/envelopePlot.Rd | 21 + man/exp.cov.Rd | 13 man/fields-internal.Rd | 13 man/fields-stuff.Rd | 13 man/fields.Rd | 84 ++-- man/fields.grid.Rd | 13 man/fields.hints.Rd | 13 man/fields.tests.Rd | 13 man/flame.Rd | 13 man/grid.list.Rd | 13 man/image.cov.Rd | 13 man/image.plot.Rd | 13 man/image.smooth.Rd | 13 man/image2lz.Rd | 13 man/imagePlot.Rd | 29 - man/interp.surface.Rd | 13 man/lennon.Rd | 13 man/mKrig.Rd | 21 - man/mKrigMLE.Rd | 32 - man/minitri.Rd | 13 man/offGridWeights.Rd |only man/ozone.Rd | 13 man/ozone2.Rd | 13 man/plot.Krig.Rd | 13 man/plot.surface.Rd | 13 man/poly.image.Rd | 13 man/predict.Krig.Rd | 13 man/predictSE.Krig.Rd | 13 man/predictSurface.Rd | 13 man/print.Krig.Rd | 13 man/pushpin.Rd | 13 man/qsreg.Rd | 13 man/quilt.plot.Rd | 50 +- man/rat.diet.Rd | 13 man/rdist.Rd | 13 man/rdist.earth.Rd | 13 man/registeredC.Rd | 19 man/ribbon.plot.Rd | 13 man/set.panel.Rd | 13 man/sim.Krig.Rd | 118 ++++- man/sim.rf.Rd | 18 man/smooth.2d.Rd | 13 man/spam2lz.Rd | 13 man/spatialProcess.Rd | 17 man/splint.Rd | 13 man/sreg.Rd | 13 man/stats.Rd | 13 man/stats.bin.Rd | 13 man/summary.Krig.Rd | 13 man/summary.ncdf.Rd | 13 man/supportsArg.Rd | 13 man/surface.Krig.Rd | 15 man/tim.colors.Rd | 25 - man/transformx.Rd | 13 man/vgram.Rd | 13 man/vgram.matrix.Rd | 13 man/world.Rd | 13 man/xline.Rd | 13 man/yline.Rd | 13 tests/Krig.Z.test.R | 37 + tests/Krig.Z.test.Rout.save | 41 +- tests/Krig.se.W.R | 37 + tests/Krig.se.W.Rout.save | 41 +- tests/Krig.se.grid.test.R | 37 + tests/Krig.se.grid.test.Rout.save | 41 +- tests/Krig.se.test.R | 37 + tests/Krig.se.test.Rout.save | 41 +- tests/Krig.test.R | 37 + tests/Krig.test.Rout.save | 41 +- tests/Krig.test.W.R | 37 + tests/Krig.test.W.Rout.save | 41 +- tests/KrigGCVREML.test.R | 37 + tests/KrigGCVREML.test.Rout.save | 41 +- tests/Likelihood.test.R | 37 + tests/Likelihood.test.Rout.save | 41 +- tests/SEFixedParameters.R | 19 tests/SEFixedParameters.Rout.save | 23 - tests/Tps.test.R | 37 + tests/Tps.test.Rout.save | 41 +- tests/Wend.test.R | 37 + tests/Wend.test.Rout.save | 41 +- tests/cov.test.R | 37 + tests/cov.test.Rout.save | 41 +- tests/cov.test2.R | 37 + tests/cov.test2.Rout.save | 41 +- tests/derivative.test.R | 37 + tests/derivative.test.Rout.save | 41 +- tests/diag.multiply.test.R | 37 + tests/diag.multiply.test.Rout.save | 41 +- tests/evlpoly.test.R | 37 + tests/evlpoly.test.Rout.save | 41 +- tests/fastTpsPredict.test.R | 37 + tests/fastTpsPredict.test.Rout.save | 41 +- tests/mKrig.Z.R | 37 + tests/mKrig.Z.Rout.save | 41 +- tests/mKrig.parameters.test.R | 37 + tests/mKrig.parameters.test.Rout.save | 41 +- tests/mKrig.se.test.R | 37 + tests/mKrig.se.test.Rout.save | 41 +- tests/mKrig.test.R | 37 + tests/mKrig.test.Rout.save | 41 +- tests/mKrigMLETest.R | 37 + tests/mKrigMLETest.Rout.save | 41 +- tests/mKrigREMLTest.R | 37 + tests/mKrigREMLTest.Rout.save | 41 +- tests/misc.test.R | 37 + tests/misc.test.Rout.save | 41 +- tests/offGridWeights.test.R |only tests/offGridWeights.test.Rout.save |only tests/offGridWeightsNEW.test.Rout.save |only tests/offGridWeightsNew.test.R |only tests/spam.test.R | 37 + tests/spam.test.Rout.save | 41 +- tests/sreg.test.R | 37 + tests/sreg.test.Rout.save | 41 +- tests/temp.R | 37 + tests/vgram.test.R | 37 + tests/vgram.test.Rout.save | 41 +- 338 files changed, 4219 insertions(+), 2959 deletions(-)
Title: Understand and Describe Bayesian Models and Posterior
Distributions
Description: Provides utilities to describe posterior
distributions and Bayesian models. It includes point-estimates such as
Maximum A Posteriori (MAP), measures of dispersion (Highest Density
Interval - HDI; Kruschke, 2015 <doi:10.1016/C2012-0-00477-2>) and
indices used for null-hypothesis testing (such as ROPE percentage, pd
and Bayes factors).
Author: Dominique Makowski [aut, cre] (<https://orcid.org/0000-0001-5375-9967>,
@Dom_Makowski),
Daniel Lüdecke [aut] (<https://orcid.org/0000-0002-8895-3206>,
@strengejacke),
Mattan S. Ben-Shachar [aut] (<https://orcid.org/0000-0002-4287-4801>,
@mattansb),
Indrajeet Patil [aut] (<https://orcid.org/0000-0003-1995-6531>,
@patilindrajeets),
Michael D. Wilson [aut] (<https://orcid.org/0000-0003-4143-7308>),
Brenton M. Wiernik [aut] (<https://orcid.org/0000-0001-9560-6336>,
@bmwiernik),
Paul-Christian Bürkner [rev],
Tristan Mahr [rev] (<https://orcid.org/0000-0002-8890-5116>),
Henrik Singmann [ctb] (<https://orcid.org/0000-0002-4842-3657>),
Quentin F. Gronau [ctb] (<https://orcid.org/0000-0001-5510-6943>),
Sam Crawley [ctb] (<https://orcid.org/0000-0002-7847-0411>)
Maintainer: Dominique Makowski <dom.makowski@gmail.com>
Diff between bayestestR versions 0.11.0 dated 2021-09-02 and 0.11.5 dated 2021-10-30
bayestestR-0.11.0/bayestestR/man/figures/unnamed-chunk-10-1.png |only bayestestR-0.11.0/bayestestR/man/figures/unnamed-chunk-11-1.png |only bayestestR-0.11.0/bayestestR/man/figures/unnamed-chunk-12-1.png |only bayestestR-0.11.0/bayestestR/man/figures/unnamed-chunk-14-1.png |only bayestestR-0.11.0/bayestestR/man/figures/unnamed-chunk-16-1.png |only bayestestR-0.11.0/bayestestR/man/figures/unnamed-chunk-5-1.png |only bayestestR-0.11.0/bayestestR/man/figures/unnamed-chunk-6-1.png |only bayestestR-0.11.0/bayestestR/man/figures/unnamed-chunk-7-1.png |only bayestestR-0.11.5/bayestestR/DESCRIPTION | 10 bayestestR-0.11.5/bayestestR/MD5 | 103 +- bayestestR-0.11.5/bayestestR/NAMESPACE | 1 bayestestR-0.11.5/bayestestR/NEWS.md | 7 bayestestR-0.11.5/bayestestR/R/bci.R | 2 bayestestR-0.11.5/bayestestR/R/ci.R | 6 bayestestR-0.11.5/bayestestR/R/contr.orthonorm.R | 24 bayestestR-0.11.5/bayestestR/R/cwi.R | 15 bayestestR-0.11.5/bayestestR/R/describe_posterior.R | 8 bayestestR-0.11.5/bayestestR/R/plot.R | 13 bayestestR-0.11.5/bayestestR/R/si.R | 20 bayestestR-0.11.5/bayestestR/README.md | 47 - bayestestR-0.11.5/bayestestR/build/partial.rdb |binary bayestestR-0.11.5/bayestestR/build/vignette.rds |binary bayestestR-0.11.5/bayestestR/inst/doc/bayes_factors.R | 94 +- bayestestR-0.11.5/bayestestR/inst/doc/bayes_factors.Rmd | 114 +- bayestestR-0.11.5/bayestestR/inst/doc/bayes_factors.html | 193 ++-- bayestestR-0.11.5/bayestestR/inst/doc/bayestestR.html | 4 bayestestR-0.11.5/bayestestR/inst/doc/example1.R | 2 bayestestR-0.11.5/bayestestR/inst/doc/example1.Rmd | 2 bayestestR-0.11.5/bayestestR/inst/doc/example1.html | 2 bayestestR-0.11.5/bayestestR/inst/doc/example2.html | 10 bayestestR-0.11.5/bayestestR/inst/doc/example3.html | 2 bayestestR-0.11.5/bayestestR/inst/doc/guidelines.html | 2 bayestestR-0.11.5/bayestestR/inst/doc/mediation.html | 2 bayestestR-0.11.5/bayestestR/man/bci.Rd | 2 bayestestR-0.11.5/bayestestR/man/ci.Rd | 4 bayestestR-0.11.5/bayestestR/man/contr.orthonorm.Rd | 25 bayestestR-0.11.5/bayestestR/man/cwi.Rd | 214 +--- bayestestR-0.11.5/bayestestR/man/figures/LetsPokeAPizza.jpg |only bayestestR-0.11.5/bayestestR/man/figures/YodaBayes.jpg |only bayestestR-0.11.5/bayestestR/man/figures/banner.png |only bayestestR-0.11.5/bayestestR/man/figures/bayesianMaster.jpg |only bayestestR-0.11.5/bayestestR/man/figures/deathsticks.jpg |only bayestestR-0.11.5/bayestestR/man/figures/logo.png |binary bayestestR-0.11.5/bayestestR/man/figures/profsanders.jpg |only bayestestR-0.11.5/bayestestR/man/figures/unnamed-chunk-13-1.png |binary bayestestR-0.11.5/bayestestR/man/figures/unnamed-chunk-15-1.png |binary bayestestR-0.11.5/bayestestR/man/figures/unnamed-chunk-17-1.png |binary bayestestR-0.11.5/bayestestR/man/figures/unnamed-chunk-8-1.png |binary bayestestR-0.11.5/bayestestR/man/figures/unnamed-chunk-9-1.png |binary bayestestR-0.11.5/bayestestR/man/figures/watto.jpg |only bayestestR-0.11.5/bayestestR/tests/testthat/test-bayesfactor_parameters.R | 42 bayestestR-0.11.5/bayestestR/tests/testthat/test-blavaan.R | 11 bayestestR-0.11.5/bayestestR/tests/testthat/test-check_prior.R | 9 bayestestR-0.11.5/bayestestR/tests/testthat/test-describe_posterior.R | 469 +++++----- bayestestR-0.11.5/bayestestR/tests/testthat/test-describe_prior.R | 38 bayestestR-0.11.5/bayestestR/tests/testthat/test-map_estimate.R | 28 bayestestR-0.11.5/bayestestR/tests/testthat/test-rope.R | 50 - bayestestR-0.11.5/bayestestR/tests/testthat/test-rope_range.R | 48 - bayestestR-0.11.5/bayestestR/vignettes/bayes_factors.Rmd | 114 +- bayestestR-0.11.5/bayestestR/vignettes/example1.Rmd | 2 60 files changed, 950 insertions(+), 789 deletions(-)
Title: Basic Biological Sequence Handling
Description: Basic functions for microbial sequence data analysis. The idea is to use generic R data structures as much as possible, making R data wrangling possible also for sequence data.
Author: Lars Snipen, Kristian Hovde Liland
Maintainer: Lars Snipen <lars.snipen@nmbu.no>
Diff between microseq versions 2.1.4 dated 2021-01-25 and 2.1.5 dated 2021-10-30
DESCRIPTION | 12 ++++++------ MD5 | 18 +++++++++--------- R/external.R | 5 +++-- R/fastq.R | 2 +- build/vignette.rds |binary inst/doc/vignette.Rnw | 2 +- inst/doc/vignette.pdf |binary man/muscle.Rd | 2 +- src/RcppExports.cpp | 5 +++++ vignettes/vignette.Rnw | 2 +- 10 files changed, 27 insertions(+), 21 deletions(-)
Title: Linear Discriminant Function and Canonical Correlation Analysis
Description: Produces SPSS- and SAS-like output for linear discriminant
function analysis and canonical correlation analysis. The methods are described in
Manly & Alberto (2017, ISBN:9781498728966),
Tabachnik & Fidell (2013, ISBN-10:0-205-89081-4), and
Venables & Ripley (2002, ISBN:0-387-95457-0).
Author: Brian P. O'Connor
Maintainer: Brian P. O'Connor <brian.oconnor@ubc.ca>
Diff between DFA.CANCOR versions 0.2.1 dated 2021-06-19 and 0.2.2 dated 2021-10-30
DESCRIPTION | 8 +++--- MD5 | 8 +++--- R/CANCOR.R | 72 ++++++++++++++++++++++++++++++------------------------------ R/DFA.R | 6 +++-- R/boc.R | 14 +++++++++-- 5 files changed, 59 insertions(+), 49 deletions(-)
Title: Time Series, Analysis and Application
Description: Accompanies the book Rainer Schlittgen and Cristina Sattarhoff (2020) <https://www.degruyter.com/view/title/575978> "Angewandte Zeitreihenanalyse mit R, 4. Auflage" . The package contains the time series and functions used therein. It was developed over many years teaching courses about time series analysis.
Author: Rainer Schlittgen
Maintainer: Rainer Schlittgen <R.Schlittgen@t-online.de>
Diff between tsapp versions 1.0.3 dated 2020-11-05 and 1.0.4 dated 2021-10-30
DESCRIPTION | 8 ++++---- MD5 | 23 ++++++++++++++++------- NAMESPACE | 7 ++++--- R/HACLasso.r |only R/frequdom.r | 42 +++++++++++++++++++++++++++++++++--------- R/series.r | 14 ++++++++++++-- data/MACHINES.RData |only man/ENGINES.Rd | 6 +++--- man/MACHINES.Rd |only man/init_values.Rd |only man/lambdaCalculationHAC.Rd |only man/lambdaCalculationLoad.Rd |only man/periodogram.Rd | 6 +++--- man/perwinda.Rd |only man/rlassoHAC.Rd |only man/rlassoLoad.Rd |only man/specest.Rd | 13 ++++++++++--- 17 files changed, 85 insertions(+), 34 deletions(-)
Title: Algorithms for Bundling Edges in Networks and Visualizing Flow
and Metro Maps
Description: Implements several algorithms for bundling edges in networks and flow and metro map layouts. This includes force directed edge bundling <doi:10.1111/j.1467-8659.2009.01450.x>, a flow algorithm based on Steiner trees<doi:10.1080/15230406.2018.1437359> and a multicriteria optimization method for metro map layouts <doi:10.1109/TVCG.2010.24>.
Author: David Schoch [aut, cre] (<https://orcid.org/0000-0003-2952-4812>)
Maintainer: David Schoch <david.schoch@manchester.ac.uk>
Diff between edgebundle versions 0.2.1 dated 2021-08-09 and 0.3.0 dated 2021-10-30
DESCRIPTION | 8 - MD5 | 24 ++--- NAMESPACE | 1 NEWS.md | 6 + R/bundle_force.R | 2 R/bundle_hammer.R | 2 R/bundle_path.R |only R/bundle_stub.R | 2 README.md | 207 ++++++++++++++++++++++++++++++---------------- man/edge_bundle_force.Rd | 2 man/edge_bundle_hammer.Rd | 2 man/edge_bundle_path.Rd |only man/edge_bundle_stub.Rd | 2 src/RcppExports.cpp | 5 + 14 files changed, 172 insertions(+), 91 deletions(-)
Title: Multimodal and Multilevel Network Analysis
Description: A set of tools that extend common social network analysis packages
for analysing multimodal and multilevel networks.
It includes functions for one- and two-mode (and sometimes three-mode)
centrality, centralization, clustering, and constraint,
as well as for one- and two-mode network regression and block-modelling.
All functions operate with matrices, edge lists,
and 'igraph', 'network'/'sna', and 'tidygraph' objects.
The package is released as a complement to
'Multimodal Political Networks' (2021, ISBN:9781108985000),
and includes various datasets used in the book.
Author: James Hollway [cph, cre, aut, ctb] (IHEID,
<https://orcid.org/0000-0002-8361-9647>)
Maintainer: James Hollway <james.hollway@graduateinstitute.ch>
Diff between migraph versions 0.8.2 dated 2021-10-25 and 0.8.5 dated 2021-10-30
migraph-0.8.2/migraph/R/blockmodel_visualisation.R |only migraph-0.8.2/migraph/R/coercion.R |only migraph-0.8.2/migraph/inst/carte-geographique-du-monde.jpg |only migraph-0.8.2/migraph/inst/doc/blockmodel.R |only migraph-0.8.2/migraph/inst/doc/blockmodel.Rmd |only migraph-0.8.2/migraph/inst/doc/blockmodel.html |only migraph-0.8.2/migraph/man/blockmodel_visualisation.Rd |only migraph-0.8.2/migraph/man/ggidentify.Rd |only migraph-0.8.2/migraph/man/graph_triad_census.Rd |only migraph-0.8.2/migraph/man/marvel.Rd |only migraph-0.8.2/migraph/tests/testthat/test-coercion.R |only migraph-0.8.2/migraph/tests/testthat/test-ggraphgrid.R |only migraph-0.8.2/migraph/vignettes/blockmodel.Rmd |only migraph-0.8.5/migraph/DESCRIPTION | 10 migraph-0.8.5/migraph/MD5 | 119 ++++++----- migraph-0.8.5/migraph/NAMESPACE | 38 +++ migraph-0.8.5/migraph/NEWS.md | 79 +++++++ migraph-0.8.5/migraph/R/as.R |only migraph-0.8.5/migraph/R/autographr.R | 24 ++ migraph-0.8.5/migraph/R/blockmodel.R | 60 ++--- migraph-0.8.5/migraph/R/blockmodel_vis.R |only migraph-0.8.5/migraph/R/census.R | 138 ++++++++++--- migraph-0.8.5/migraph/R/centralization.R | 27 +- migraph-0.8.5/migraph/R/cluster.R |only migraph-0.8.5/migraph/R/cohesion.R | 59 +++-- migraph-0.8.5/migraph/R/constraint.R | 27 ++ migraph-0.8.5/migraph/R/create.R | 58 ++++- migraph-0.8.5/migraph/R/data_m182.R | 12 - migraph-0.8.5/migraph/R/generate.R | 31 ++ migraph-0.8.5/migraph/R/ggidentify.R | 21 + migraph-0.8.5/migraph/R/ggraphgrid.R | 105 --------- migraph-0.8.5/migraph/R/is.R | 16 + migraph-0.8.5/migraph/R/layout.R |only migraph-0.8.5/migraph/R/project.R | 1 migraph-0.8.5/migraph/R/reexports_ggplot2.R | 12 + migraph-0.8.5/migraph/R/reexports_tidygraph.R | 4 migraph-0.8.5/migraph/R/smallworld.R | 8 migraph-0.8.5/migraph/R/to.R | 56 ++++- migraph-0.8.5/migraph/build/vignette.rds |binary migraph-0.8.5/migraph/inst/doc/p3centrality.R |only migraph-0.8.5/migraph/inst/doc/p3centrality.Rmd |only migraph-0.8.5/migraph/inst/doc/p3centrality.html |only migraph-0.8.5/migraph/inst/doc/p4community.R |only migraph-0.8.5/migraph/inst/doc/p4community.Rmd |only migraph-0.8.5/migraph/inst/doc/p4community.html |only migraph-0.8.5/migraph/inst/doc/p5blockmodel.R |only migraph-0.8.5/migraph/inst/doc/p5blockmodel.Rmd |only migraph-0.8.5/migraph/inst/doc/p5blockmodel.html |only migraph-0.8.5/migraph/man/autographr.Rd | 6 migraph-0.8.5/migraph/man/blockmodel.Rd | 12 - migraph-0.8.5/migraph/man/blockmodel_vis.Rd |only migraph-0.8.5/migraph/man/census.Rd | 27 +- migraph-0.8.5/migraph/man/centralization.Rd | 14 - migraph-0.8.5/migraph/man/cluster.Rd |only migraph-0.8.5/migraph/man/cluster_triad_census.Rd |only migraph-0.8.5/migraph/man/coercion.Rd | 14 + migraph-0.8.5/migraph/man/cohesion.Rd | 14 - migraph-0.8.5/migraph/man/create.Rd | 27 ++ migraph-0.8.5/migraph/man/generate.Rd | 16 + migraph-0.8.5/migraph/man/ggraphgrid.Rd | 6 migraph-0.8.5/migraph/man/ggtools.Rd |only migraph-0.8.5/migraph/man/graph_census.Rd |only migraph-0.8.5/migraph/man/graph_components.Rd |only migraph-0.8.5/migraph/man/is.Rd | 16 + migraph-0.8.5/migraph/man/layouts.Rd |only migraph-0.8.5/migraph/man/m182.Rd |only migraph-0.8.5/migraph/man/node_components.Rd |only migraph-0.8.5/migraph/man/node_smallworld.Rd | 6 migraph-0.8.5/migraph/man/project.Rd | 7 migraph-0.8.5/migraph/man/reexports.Rd | 8 migraph-0.8.5/migraph/man/to.Rd | 51 ++++ migraph-0.8.5/migraph/tests/testthat/Rplots.pdf |binary migraph-0.8.5/migraph/tests/testthat/test-as.R |only migraph-0.8.5/migraph/tests/testthat/test-centralization.R | 58 ++--- migraph-0.8.5/migraph/tests/testthat/test-cohesion.R | 2 migraph-0.8.5/migraph/tests/testthat/test-create.R | 2 migraph-0.8.5/migraph/tests/testthat/test-to.R | 115 ++++++++++ migraph-0.8.5/migraph/vignettes/p3centrality.Rmd |only migraph-0.8.5/migraph/vignettes/p4community.Rmd |only migraph-0.8.5/migraph/vignettes/p5blockmodel.Rmd |only 80 files changed, 932 insertions(+), 374 deletions(-)
Title: Utility Functions for Conducting and Interpreting Meta-Analyses
Description: Contains functions to estimate the proportion of effects stronger than a threshold
of scientific importance (function prop_stronger), to nonparametrically characterize the distribution of effects in a meta-analysis (calib_ests, pct_pval),
to make effect size conversions (r_to_d, r_to_z, z_to_r, d_to_logRR), to compute and format inference in a meta-analysis (format_CI, format_stat, tau_CI), to scrape results from
existing meta-analyses for re-analysis (scrape_meta, parse_CI_string, ci_to_var).
Author: Maya B. Mathur, Rui Wang, Tyler J. VanderWeele
Maintainer: Maya B. Mathur <mmathur@stanford.edu>
Diff between MetaUtility versions 2.1.1 dated 2021-03-16 and 2.1.2 dated 2021-10-30
DESCRIPTION | 11 +- MD5 | 21 ++-- NAMESPACE | 1 R/functions.R | 240 +++++++++++++++++++++++++++++---------------------- man/calib_ests.Rd | 2 man/ci_to_var.Rd |only man/d_to_logRR.Rd | 4 man/pct_pval.Rd | 2 man/prop_stronger.Rd | 2 man/r_to_z.Rd | 3 man/tau_CI.Rd | 2 man/z_to_r.Rd | 3 12 files changed, 166 insertions(+), 125 deletions(-)
Title: Read and Write Files to SQLite Databases
Description: Reads and writes files to SQLite databases
<https://www.sqlite.org/index.html> as flobs (a flob is a blob that
preserves the file extension).
Author: Sebastian Dalgarno [aut] (<https://orcid.org/0000-0002-3658-4517>),
Joe Thorley [aut] (<https://orcid.org/0000-0002-7683-4592>),
Evan Amies-Galonski [aut, cre]
(<https://orcid.org/0000-0003-1096-2089>),
Poisson Consulting [cph, fnd]
Maintainer: Evan Amies-Galonski <evan@poissonconsulting.ca>
Diff between dbflobr versions 0.1.0 dated 2020-05-13 and 0.2.1 dated 2021-10-30
dbflobr-0.1.0/dbflobr/tests/testthat/test-utils.R |only dbflobr-0.2.1/dbflobr/DESCRIPTION | 51 +- dbflobr-0.2.1/dbflobr/MD5 | 46 +- dbflobr-0.2.1/dbflobr/NEWS.md | 29 + dbflobr-0.2.1/dbflobr/R/check.R | 32 + dbflobr-0.2.1/dbflobr/R/dbflob.R | 13 dbflobr-0.2.1/dbflobr/R/import.R | 103 ++++- dbflobr-0.2.1/dbflobr/R/save.R | 82 +++- dbflobr-0.2.1/dbflobr/R/utils.R | 32 + dbflobr-0.2.1/dbflobr/README.md | 15 dbflobr-0.2.1/dbflobr/build/vignette.rds |binary dbflobr-0.2.1/dbflobr/inst/WORDLIST |only dbflobr-0.2.1/dbflobr/inst/doc/vignette.Rmd | 2 dbflobr-0.2.1/dbflobr/inst/doc/vignette.html | 195 ---------- dbflobr-0.2.1/dbflobr/man/dbflobr-package.Rd | 6 dbflobr-0.2.1/dbflobr/man/import_all_flobs.Rd | 21 + dbflobr-0.2.1/dbflobr/man/import_flobs.Rd | 15 dbflobr-0.2.1/dbflobr/man/read_flob.Rd | 7 dbflobr-0.2.1/dbflobr/man/save_all_flobs.Rd | 22 + dbflobr-0.2.1/dbflobr/man/save_flobs.Rd | 22 + dbflobr-0.2.1/dbflobr/tests/testthat/test-check.R | 25 + dbflobr-0.2.1/dbflobr/tests/testthat/test-db.R | 2 dbflobr-0.2.1/dbflobr/tests/testthat/test-import.R | 386 ++++++++++++++++++++- dbflobr-0.2.1/dbflobr/tests/testthat/test-save.R | 204 +++++++++-- dbflobr-0.2.1/dbflobr/vignettes/vignette.Rmd | 2 25 files changed, 951 insertions(+), 361 deletions(-)
Title: Binary Expansion Testing
Description: Nonparametric detection of nonuniformity and dependence with Binary Expansion Testing (BET). See Kai Zhang (2019) BET on Independence, Journal of the American Statistical Association, 114:528, 1620-1637, <DOI:10.1080/01621459.2018.1537921>, Kai Zhang, Zhigen Zhai, and Wen Zhou. (2021). BEAUTY Powered BEAST, <arXiv:2103.00674> and Zhigen Zhao, Michael Baiocchi, Kai Zhang. SorBET: A Fast and Powerful Algorithm to Test Dependence of Variables.
Author: Wan Zhang [aut, cre],
Zhigen Zhao [aut],
Michael Baiocchi [aut],
Kai Zhang [aut]
Maintainer: Wan Zhang <wanz63@live.unc.edu>
Diff between BET versions 0.4.0 dated 2021-09-11 and 0.4.1 dated 2021-10-30
DESCRIPTION | 8 ++++---- MD5 | 18 +++++++++--------- R/plot.R | 44 +++++++++++++++++++++++--------------------- build/partial.rdb |binary man/BEAST_null.Rd | 2 +- man/BET.Rd | 2 +- man/BETs.Rd | 2 +- man/Beast.Rd | 2 +- src/BET3.cpp | 22 ++++++++++++++++++---- src/RcppExports.cpp | 5 +++++ 10 files changed, 63 insertions(+), 42 deletions(-)
Title: Bayesian Fertility Projection
Description: Making probabilistic projections of total fertility rate for all countries of the world, using a Bayesian hierarchical model <doi:10.1007/s13524-011-0040-5>. Subnational probabilistic projections are also supported.
Author: Hana Sevcikova (hanas@uw.edu), Leontine Alkema (alkema@nus.edu.sg), Peiran Liu (prliu@uw.edu), Adrian Raftery (raftery@uw.edu), Bailey Fosdick (bfosdick@uw.edu), Patrick Gerland (gerland@un.org)
Maintainer: Hana Sevcikova <hanas@uw.edu>
Diff between bayesTFR versions 7.0-5 dated 2021-09-17 and 7.1-1 dated 2021-10-30
ChangeLog | 14 ++++ DESCRIPTION | 10 +- MD5 | 69 ++++++++++---------- NAMESPACE | 1 R/get_outputs.R | 149 +++++++++++++++++++++++++++++--------------- R/mcmc_ini.R | 50 +++++++++----- R/mcmc_sampling.R | 2 R/mcmc_update.R | 9 +- R/plot_functions.R | 107 ++++++++++++++++++++----------- R/predict_tfr.R | 57 +++++++--------- R/run_mcmc.R | 59 ++++++++++------- R/tfr_median_set_new.R | 24 +++---- R/updated_functions.R | 37 ++++++---- R/wpp_data.R | 45 +++++++------ build |only inst/CITATION | 4 - man/bayesTFR-package.Rd | 11 +-- man/get.country.object.Rd | 7 +- man/get.est.model.Rd | 10 +- man/get.tfr.estimation.Rd | 9 +- man/get.tfr.trajectories.Rd | 2 man/get.thinned.tfr.mcmc.Rd | 10 +- man/plot-DLcurve.Rd | 2 man/plot-pardensity.Rd | 2 man/plot-partraces.Rd | 2 man/plot-trajectories.Rd | 8 -- man/predict-tfr.Rd | 5 - man/run-mcmc.Rd | 11 ++- man/run.tfr.mcmc.extra.Rd | 5 + man/run.tfr3.mcmc.Rd | 4 - man/summary-mcmc.Rd | 4 - man/summary-prediction.Rd | 6 - man/tfr.estimation.plot.Rd | 12 ++- man/tfr.median.set.all.Rd | 5 + man/tfr.predict.extra.Rd | 6 + tests/test_functions.R | 18 +++++ 36 files changed, 467 insertions(+), 309 deletions(-)
Title: Download Data from the Wittgenstein Centre Human Capital Data
Explorer
Description: Download and plot education specific demographic data from the Wittgenstein Centre for Demography and Human Capital Data Explorer <http://dataexplorer.wittgensteincentre.org/>.
Author: Guy J. Abel [aut, cre, ctb] (<https://orcid.org/0000-0002-4893-5687>),
Samir K.C. [ctb] (<https://orcid.org/0000-0002-5213-9181>),
Michaela Potancokova [ctb],
Claudia Reiter [ctb] (<https://orcid.org/0000-0002-1485-3851>),
Andrea Tamburini [ctb],
Dilek Yildiz [ctb] (<https://orcid.org/0000-0001-6192-0634>)
Maintainer: Guy J. Abel <g.j.abel@gmail.com>
Diff between wcde versions 0.0.2 dated 2021-07-28 and 0.0.3 dated 2021-10-30
wcde-0.0.2/wcde/R/find_indicators.R |only wcde-0.0.2/wcde/R/wcde_pull.R |only wcde-0.0.2/wcde/inst/doc/intro.R |only wcde-0.0.2/wcde/inst/doc/intro.Rmd |only wcde-0.0.2/wcde/inst/doc/intro.html |only wcde-0.0.2/wcde/man/wcde_pull.Rd |only wcde-0.0.2/wcde/vignettes/intro.Rmd |only wcde-0.0.3/wcde/DESCRIPTION | 19 ++--- wcde-0.0.3/wcde/MD5 | 56 +++++++------- wcde-0.0.3/wcde/NEWS.md | 11 ++ wcde-0.0.3/wcde/R/edu_group_sum.R | 124 +++++++++++++++++---------------- wcde-0.0.3/wcde/R/find_indicator.R |only wcde-0.0.3/wcde/R/get_wcde.R | 4 - wcde-0.0.3/wcde/R/get_wcde_single.R |only wcde-0.0.3/wcde/R/wic_col4.R | 2 wcde-0.0.3/wcde/R/wic_col6.R | 2 wcde-0.0.3/wcde/R/wic_col8.R | 2 wcde-0.0.3/wcde/R/wic_indicators.R | 4 - wcde-0.0.3/wcde/R/wic_locations.R | 4 - wcde-0.0.3/wcde/R/wic_scenarios.R | 4 - wcde-0.0.3/wcde/R/zzz.R |only wcde-0.0.3/wcde/build/vignette.rds |binary wcde-0.0.3/wcde/inst/doc/wcde.R |only wcde-0.0.3/wcde/inst/doc/wcde.Rmd |only wcde-0.0.3/wcde/inst/doc/wcde.html |only wcde-0.0.3/wcde/inst/figures |only wcde-0.0.3/wcde/man/edu_group_sum.Rd | 3 wcde-0.0.3/wcde/man/find_indicator.Rd | 2 wcde-0.0.3/wcde/man/get_wcde.Rd | 2 wcde-0.0.3/wcde/man/get_wcde_single.Rd |only wcde-0.0.3/wcde/man/wic_col4.Rd | 2 wcde-0.0.3/wcde/man/wic_col6.Rd | 2 wcde-0.0.3/wcde/man/wic_col8.Rd | 2 wcde-0.0.3/wcde/man/wic_indicators.Rd | 4 - wcde-0.0.3/wcde/man/wic_locations.Rd | 4 - wcde-0.0.3/wcde/man/wic_scenarios.Rd | 4 - wcde-0.0.3/wcde/vignettes/wcde.Rmd |only 37 files changed, 138 insertions(+), 119 deletions(-)
Title: Storage Management in 'Azure'
Description: Manage storage in Microsoft's 'Azure' cloud: <https://azure.microsoft.com/en-us/product-categories/storage/>. On the admin side, 'AzureStor' includes features to create, modify and delete storage accounts. On the client side, it includes an interface to blob storage, file storage, and 'Azure Data Lake Storage Gen2': upload and download files and blobs; list containers and files/blobs; create containers; and so on. Authenticated access to storage is supported, via either a shared access key or a shared access signature (SAS). Part of the 'AzureR' family of packages.
Author: Hong Ooi [aut, cre],
Microsoft [cph]
Maintainer: Hong Ooi <hongooi73@gmail.com>
Diff between AzureStor versions 3.5.1 dated 2021-08-13 and 3.5.2 dated 2021-10-30
DESCRIPTION | 12 ++-- MD5 | 39 +++++++------ NEWS.md | 7 ++ R/adls_client_funcs.R | 106 ++++++++++++++++++++---------------- R/blob_client_funcs.R | 88 ++++++++--------------------- R/file_client_funcs.R | 22 +++++-- R/storage_utils.R | 2 build/vignette.rds |binary man/blob.Rd | 4 - man/file.Rd | 2 tests/testthat/setup.R | 43 +++++++------- tests/testthat/test02a_blobext.R | 2 tests/testthat/test02c_blobappend.R | 2 tests/testthat/test02d_blobdeldir.R |only tests/testthat/test03a_fileext.R | 2 tests/testthat/test03b_filedeldir.R |only tests/testthat/test04_adls.R | 2 tests/testthat/test04a_adlsext.R | 2 tests/testthat/test04b_adlsdeldir.R |only tests/testthat/test05_generics.R | 2 tests/testthat/test08_interop1.R | 2 tests/testthat/test08a_interop2.R | 2 22 files changed, 169 insertions(+), 172 deletions(-)
Title: Toolbox for Pseudo and Quasi Random Number Generation and Random
Generator Tests
Description: Provides (1) pseudo random generators - general linear congruential generators,
multiple recursive generators and generalized feedback shift register (SF-Mersenne Twister
algorithm and WELL generators); (2) quasi random generators - the Torus algorithm, the
Sobol sequence, the Halton sequence (including the Van der Corput sequence) and (3) some
generator tests - the gap test, the serial test, the poker test.
See e.g. Gentle (2003) <doi:10.1007/b97336>. The package can be provided
without the rngWELL dependency on demand.
Take a look at the Distribution task view of types and tests of random number generators.
Version in Memoriam of Diethelm and Barbara Wuertz.
Author: R port by Yohan Chalabi, Christophe Dutang, Petr Savicky and Diethelm Wuertz with some underlying C codes of (i) the SFMT algorithm from M. Matsumoto and M. Saito, (ii) the Knuth-TAOCP RNG from D. Knuth.
Maintainer: Christophe Dutang <christophe.dutang@ensimag.fr>
Diff between randtoolbox versions 1.31.0 dated 2021-10-27 and 1.31.1 dated 2021-10-30
DESCRIPTION | 6 +-- MD5 | 36 ++++++++++----------- inst/NEWS | 16 ++++----- inst/doc/fullpres.pdf |binary inst/doc/shortintro.pdf |binary man/freqtest.Rd | 2 - man/pseudoRNG.Rd | 12 +++---- man/quasiRNG.Rd | 28 ++++++++-------- src/version.c | 2 - tests/test-SFMT.R | 14 ++++---- tests/test-runifInterface-LCG.R | 4 +- tests/test-runifInterface-nonLCG.R | 11 +++--- tests/test-sobol-Ccode.R | 30 ++++++++++------- tests/test-sobol-basic.R | 29 ++++++++++------- tests/test-sobol-scram.R | 62 ++++++++++++++++++------------------- tests/testHalton.R | 31 +++++++++--------- tests/testSobol.R | 15 ++++---- tests/testStirling.R | 26 ++++++++++----- tests/testTorus.R | 34 ++++++++++---------- 19 files changed, 192 insertions(+), 166 deletions(-)
Title: Methods for the Indirect Estimation of Bilateral Migration
Description: Tools for estimating, measuring and working with migration data.
Author: Guy J. Abel [aut, cre] (<https://orcid.org/0000-0002-4893-5687>)
Maintainer: Guy J. Abel <g.j.abel@gmail.com>
Diff between migest versions 2.0.0 dated 2021-07-25 and 2.0.1 dated 2021-10-30
migest-2.0.0/migest/R/counter.R |only migest-2.0.0/migest/R/sum_turnover.R |only migest-2.0.0/migest/man/counter.Rd |only migest-2.0.0/migest/man/sum_turnover.Rd |only migest-2.0.1/migest/DESCRIPTION | 17 migest-2.0.1/migest/MD5 | 213 +- migest-2.0.1/migest/NAMESPACE | 6 migest-2.0.1/migest/NEWS.md |only migest-2.0.1/migest/R/birth_mat.R | 8 migest-2.0.1/migest/R/block_matrix.R | 3 migest-2.0.1/migest/R/block_sum.R | 2 migest-2.0.1/migest/R/cm2.R | 8 migest-2.0.1/migest/R/cm3.R | 6 migest-2.0.1/migest/R/cm_net.R | 5 migest-2.0.1/migest/R/cm_net_tot.R | 4 migest-2.0.1/migest/R/death_mat.R | 18 migest-2.0.1/migest/R/dict_ims.R |only migest-2.0.1/migest/R/ffs_demo.R | 54 migest-2.0.1/migest/R/ffs_diff.R | 12 migest-2.0.1/migest/R/ffs_rates.R | 12 migest-2.0.1/migest/R/format_migration_tibble.R | 4 migest-2.0.1/migest/R/index_age.R | 5 migest-2.0.1/migest/R/index_age_rc.R | 7 migest-2.0.1/migest/R/index_connectivity.R | 10 migest-2.0.1/migest/R/index_distance.R | 3 migest-2.0.1/migest/R/index_impact.R | 5 migest-2.0.1/migest/R/index_intensity.R | 4 migest-2.0.1/migest/R/indian_sub.R | 7 migest-2.0.1/migest/R/ipf2_block.R | 2 migest-2.0.1/migest/R/ipf2_stripe.R | 4 migest-2.0.1/migest/R/ipf_seed.R | 24 migest-2.0.1/migest/R/ipumsi_age.R | 8 migest-2.0.1/migest/R/italy_area.R | 5 migest-2.0.1/migest/R/korea_dist.R | 2 migest-2.0.1/migest/R/korea_pop.R | 2 migest-2.0.1/migest/R/korea_reg.R | 2 migest-2.0.1/migest/R/manila_1970.R | 2 migest-2.0.1/migest/R/match_pob_tot.R | 50 migest-2.0.1/migest/R/mig_chord.R |only migest-2.0.1/migest/R/multi_comp.R | 8 migest-2.0.1/migest/R/multi_comp2.R | 8 migest-2.0.1/migest/R/nchars_wrap.R |only migest-2.0.1/migest/R/net_sr.R | 2 migest-2.0.1/migest/R/net_vs.R | 4 migest-2.0.1/migest/R/new_england_1960.R | 6 migest-2.0.1/migest/R/rc_model_un.R | 2 migest-2.0.1/migest/R/rescale_net.R | 2 migest-2.0.1/migest/R/str_wrap_n.R |only migest-2.0.1/migest/R/str_wrap_n_single.R |only migest-2.0.1/migest/R/stripe_matrix.R | 2 migest-2.0.1/migest/R/sum_bilateral.R |only migest-2.0.1/migest/R/sum_expand.R | 11 migest-2.0.1/migest/R/sum_lump.R | 36 migest-2.0.1/migest/R/sum_net.R | 10 migest-2.0.1/migest/R/sum_od.R | 9 migest-2.0.1/migest/R/sum_region.R |only migest-2.0.1/migest/R/uar_1960.R | 1 migest-2.0.1/migest/R/umbrella.R |only migest-2.0.1/migest/R/usa_1960.R | 2 migest-2.0.1/migest/README.md | 39 migest-2.0.1/migest/data/dict_ims.rda |only migest-2.0.1/migest/data/umbrella.rda |only migest-2.0.1/migest/demo/cfplot_nat.R | 114 - migest-2.0.1/migest/demo/cfplot_reg.R | 106 - migest-2.0.1/migest/demo/cfplot_reg2.R | 254 +- migest-2.0.1/migest/inst/imr/reg_flow.csv | 1784 ++++++++++----------- migest-2.0.1/migest/man/alabama_1970.Rd | 54 migest-2.0.1/migest/man/birth_mat.Rd | 6 migest-2.0.1/migest/man/block_matrix.Rd | 3 migest-2.0.1/migest/man/bombay_1951.Rd | 52 migest-2.0.1/migest/man/cm2.Rd | 8 migest-2.0.1/migest/man/cm3.Rd | 6 migest-2.0.1/migest/man/cm_net_tot.Rd | 2 migest-2.0.1/migest/man/death_mat.Rd | 6 migest-2.0.1/migest/man/dict_ims.Rd |only migest-2.0.1/migest/man/ffs_demo.Rd | 54 migest-2.0.1/migest/man/ffs_diff.Rd | 13 migest-2.0.1/migest/man/ffs_rates.Rd | 20 migest-2.0.1/migest/man/format_migration_matrix.Rd | 62 migest-2.0.1/migest/man/format_migration_tibble.Rd | 56 migest-2.0.1/migest/man/index_age.Rd | 144 - migest-2.0.1/migest/man/index_age_rc.Rd | 56 migest-2.0.1/migest/man/index_connectivity.Rd | 132 - migest-2.0.1/migest/man/index_distance.Rd | 124 - migest-2.0.1/migest/man/index_impact.Rd | 144 - migest-2.0.1/migest/man/index_intensity.Rd | 140 - migest-2.0.1/migest/man/indian_sub.Rd | 57 migest-2.0.1/migest/man/ipf2_block.Rd | 2 migest-2.0.1/migest/man/ipf2_stripe.Rd | 4 migest-2.0.1/migest/man/ipf_seed.Rd | 10 migest-2.0.1/migest/man/ipumsi_age.Rd | 55 migest-2.0.1/migest/man/italy_area.Rd | 55 migest-2.0.1/migest/man/korea_dist.Rd | 38 migest-2.0.1/migest/man/korea_pop.Rd | 48 migest-2.0.1/migest/man/korea_reg.Rd | 50 migest-2.0.1/migest/man/manila_1970.Rd | 60 migest-2.0.1/migest/man/mig_chord.Rd |only migest-2.0.1/migest/man/multi_comp.Rd | 8 migest-2.0.1/migest/man/multi_comp2.Rd | 9 migest-2.0.1/migest/man/nchars_wrap.Rd |only migest-2.0.1/migest/man/net_sr.Rd | 125 - migest-2.0.1/migest/man/net_vs.Rd | 93 - migest-2.0.1/migest/man/new_england_1960.Rd | 54 migest-2.0.1/migest/man/pipe.Rd | 40 migest-2.0.1/migest/man/rc_model_fund.Rd | 46 migest-2.0.1/migest/man/rc_model_un.Rd | 52 migest-2.0.1/migest/man/rescale_net.Rd | 2 migest-2.0.1/migest/man/str_wrap_n.Rd |only migest-2.0.1/migest/man/str_wrap_n_single.Rd |only migest-2.0.1/migest/man/stripe_matrix.Rd | 2 migest-2.0.1/migest/man/sum_bilateral.Rd |only migest-2.0.1/migest/man/sum_expand.Rd | 198 +- migest-2.0.1/migest/man/sum_lump.Rd | 171 +- migest-2.0.1/migest/man/sum_net.Rd | 12 migest-2.0.1/migest/man/sum_od.Rd | 11 migest-2.0.1/migest/man/sum_region.Rd |only migest-2.0.1/migest/man/uar_1960.Rd | 49 migest-2.0.1/migest/man/umbrella.Rd |only migest-2.0.1/migest/man/usa_1960.Rd | 56 119 files changed, 2722 insertions(+), 2581 deletions(-)