Title: Generate High-Resolution Venn and Euler Plots
Description: A set of functions to generate high-resolution Venn and Euler plots. Includes handling for several special cases, including two-case scaling, and extensive customization of plot shape and structure.
Author: Hanbo Chen
Maintainer: Paul Boutros <pboutros@mednet.ucla.edu>
Diff between VennDiagram versions 1.7.0 dated 2021-10-30 and 1.7.1 dated 2021-12-02
DESCRIPTION | 10 +++++----- MD5 | 28 ++++++++++++++-------------- NEWS | 5 +++++ tests/testthat/Rplots.pdf |binary tests/testthat/data/plotsFive.rda |binary tests/testthat/data/plotsFour.rda |binary tests/testthat/data/plotsOne.rda |binary tests/testthat/data/plotsThree.rda |binary tests/testthat/data/plotsTwo.rda |binary tests/testthat/test-Five.R | 13 ++----------- tests/testthat/test-Four.R | 13 ++----------- tests/testthat/test-One.R | 13 ++----------- tests/testthat/test-Three.R | 12 ++---------- tests/testthat/test-Two.R | 13 ++----------- tests/testthat/testFunction.R | 22 ++++++++++++++++++++++ 15 files changed, 56 insertions(+), 73 deletions(-)
Title: Autoregressive Cokriging Models for Multifidelity Codes
Description: For emulating multifidelity computer models. The major methods include univariate autoregressive cokriging and multivariate autoregressive cokriging. The autoregressive cokriging methods are implemented for both hierarchically nested design and non-nested design. For hierarchically nested design, the model parameters are estimated via standard optimization algorithms; For non-nested design, the model parameters are estimated via Monte Carlo expectation-maximization (MCEM) algorithms. In both cases, the priors are chosen such that the posterior distributions are proper. Notice that the uniform priors on range parameters in the correlation function lead to improper posteriors. This should be avoided when Bayesian analysis is adopted. The development of objective priors for autoregressive cokriging models can be found in Pulong Ma (2020) <DOI:10.1137/19M1289893>. The development of the multivariate autoregressive cokriging models with possibly non-nested design can be found in Pulong Ma, Georgios Karagiannis, Bledar A Konomi, Taylor G Asher, Gabriel R Toro, and Andrew T Cox (2019) <arXiv:1909.01836>.
Author: Pulong Ma [aut, cre]
Maintainer: Pulong Ma <mpulong@gmail.com>
Diff between ARCokrig versions 0.1.1 dated 2020-07-08 and 0.1.2 dated 2021-12-02
ARCokrig-0.1.1/ARCokrig/tests |only ARCokrig-0.1.2/ARCokrig/DESCRIPTION | 16 ++++++++-------- ARCokrig-0.1.2/ARCokrig/MD5 | 10 +++++----- ARCokrig-0.1.2/ARCokrig/NAMESPACE | 1 + ARCokrig-0.1.2/ARCokrig/R/startup.R |only ARCokrig-0.1.2/ARCokrig/R/utils.R | 2 +- ARCokrig-0.1.2/ARCokrig/inst/NEWS.Rd |only 7 files changed, 15 insertions(+), 14 deletions(-)
Title: Query 'R' Data Frames with 'SQL'
Description: Use 'SQL' 'SELECT' statements to query 'R' data
frames.
Author: Ian Cook [aut, cre],
Cloudera [cph]
Maintainer: Ian Cook <ianmcook@gmail.com>
Diff between tidyquery versions 0.2.2 dated 2021-02-06 and 0.2.3 dated 2021-12-02
DESCRIPTION | 32 +++++++------ MD5 | 50 ++++++++++----------- NAMESPACE | 1 NEWS.md | 6 ++ R/compat.R | 8 ++- R/join.R | 78 +++++++++++++++++++++++----------- R/query.R | 60 ++++++++++++++++---------- R/quote.R | 4 - R/remove.R | 18 +++---- R/replace.R | 2 R/show_dplyr.R | 5 +- R/unscope.R | 2 README.md | 14 +++--- man/show_dplyr.Rd | 3 - tests/testthat/setup-load_data.R | 1 tests/testthat/test-dtplyr.R | 2 tests/testthat/test-environments.R | 42 +++++++++++++----- tests/testthat/test-errors.R | 6 ++ tests/testthat/test-examples.R | 12 +++-- tests/testthat/test-in_and_between.R | 2 tests/testthat/test-joins.R | 12 ++--- tests/testthat/test-order_by.R | 4 - tests/testthat/test-select_distinct.R | 4 - tests/testthat/test-select_simple.R | 12 +++-- tests/testthat/test-select_where.R | 2 tests/testthat/test-show_dplyr.R | 30 +++---------- 26 files changed, 245 insertions(+), 167 deletions(-)
Title: Raw Data Quality Control Tool for LC-MS System
Description: Assess LC–MS system performance by visualizing instrument log files and monitoring raw quality control samples within a project.
Author: Yonghui Dong
Maintainer: Yonghui Dong <yonghui.dong@gmail.com>
Diff between RawHummus versions 0.2.0 dated 2021-10-11 and 0.2.1 dated 2021-12-02
DESCRIPTION | 10 MD5 | 18 NAMESPACE | 1 R/runGui.R | 40 - README.md | 29 inst/shiny/Gui/Report.Rmd | 1185 +++++++++++++++++++-------------------- inst/shiny/Gui/mds/contact.md | 42 - inst/shiny/Gui/mds/landing.md | 2 inst/shiny/Gui/ui-tab-convert.R | 2 inst/shiny/Gui/ui-tab-evaluate.R | 203 +++--- 10 files changed, 782 insertions(+), 750 deletions(-)
Title: Multivariable Fractional Polynomials
Description: Fractional polynomials are used to represent curvature in regression models. A key reference is Royston and Altman, 1994.
Author: original by Gareth Ambler <gareth@stats.ucl.ac.uk>, modified by Axel Benner <benner@dkfz.de>
Maintainer: ORPHANED
Diff between mfp versions 1.5.2 dated 2015-09-09 and 1.5.2.1 dated 2021-12-02
DESCRIPTION | 13 +++++++++---- MD5 | 4 ++-- data/bodyfat.rda |binary 3 files changed, 11 insertions(+), 6 deletions(-)
Title: Tokenization, Parts of Speech Tagging, Lemmatization and
Dependency Parsing with the 'UDPipe' 'NLP' Toolkit
Description: This natural language processing toolkit provides language-agnostic
'tokenization', 'parts of speech tagging', 'lemmatization' and 'dependency
parsing' of raw text. Next to text parsing, the package also allows you to train
annotation models based on data of 'treebanks' in 'CoNLL-U' format as provided
at <https://universaldependencies.org/format.html>. The techniques are explained
in detail in the paper: 'Tokenizing, POS Tagging, Lemmatizing and Parsing UD 2.0
with UDPipe', available at <doi:10.18653/v1/K17-3009>.
The toolkit also contains functionalities for commonly used data manipulations on texts
which are enriched with the output of the parser. Namely functionalities and algorithms
for collocations, token co-occurrence, document term matrix handling,
term frequency inverse document frequency calculations,
information retrieval metrics (Okapi BM25), handling of multi-word expressions,
keyword detection (Rapid Automatic Keyword Extraction, noun phrase extraction, syntactical patterns)
sentiment scoring and semantic similarity analysis.
Author: Jan Wijffels [aut, cre, cph],
BNOSAC [cph],
Institute of Formal and Applied Linguistics, Faculty of Mathematics and
Physics, Charles University in Prague, Czech Republic [cph],
Milan Straka [ctb, cph],
Jana Straková [ctb, cph]
Maintainer: Jan Wijffels <jwijffels@bnosac.be>
Diff between udpipe versions 0.8.6 dated 2021-06-01 and 0.8.8 dated 2021-12-02
DESCRIPTION | 6 MD5 | 237 - NAMESPACE | 241 - NEWS.md | 411 +- R/RcppExports.R | 70 R/datasets.R | 242 - R/nlp_collocation.R | 224 - R/nlp_cooccurrence.R | 466 +- R/nlp_dependency_parsing.R | 304 - R/nlp_dependency_utlities.R | 862 ++--- R/nlp_flow.R | 2903 +++++++++--------- R/nlp_morphological.R | 254 - R/nlp_phrase_sequences.R | 360 +- R/nlp_rake.R | 186 - R/pkg.R | 20 R/sentiment.R | 382 +- R/topicmodels.R | 288 - R/udpipe_models.R | 996 +++--- R/udpipe_parse.R | 1034 +++--- R/udpipe_reconstruct.R | 352 +- R/udpipe_train.R | 738 ++-- R/utils.R | 1773 +++++----- README.md | 200 - build/vignette.rds |binary data/brussels_reviews_w2v_embeddings_lemma_nl.RData |only inst/doc/udpipe-annotation.R | 158 inst/doc/udpipe-annotation.Rmd | 366 +- inst/doc/udpipe-annotation.html | 869 +++-- inst/doc/udpipe-parallel.R | 84 inst/doc/udpipe-parallel.Rmd | 224 - inst/doc/udpipe-parallel.html | 644 ++- inst/doc/udpipe-train.R | 318 - inst/doc/udpipe-train.Rmd | 1108 +++--- inst/doc/udpipe-train.html | 2014 ++++++------ inst/doc/udpipe-tryitout.R | 62 inst/doc/udpipe-tryitout.Rmd | 144 inst/doc/udpipe-tryitout.html | 739 ++-- inst/doc/udpipe-universe.R | 8 inst/doc/udpipe-universe.Rmd | 82 inst/doc/udpipe-universe.html | 377 +- inst/doc/udpipe-usecase-postagging-lemmatisation.R | 236 - inst/doc/udpipe-usecase-postagging-lemmatisation.Rmd | 446 +- inst/doc/udpipe-usecase-postagging-lemmatisation.html | 930 +++-- inst/doc/udpipe-usecase-topicmodelling.R | 292 - inst/doc/udpipe-usecase-topicmodelling.Rmd | 530 +-- inst/doc/udpipe-usecase-topicmodelling.html | 1089 +++--- inst/dummydata/traindata.conllu | 80 inst/models-ud-2.0/params_parser | 136 inst/models-ud-2.0/params_tagger | 136 inst/models-ud-2.0/params_tokenizer | 136 man/as.data.frame.udpipe_connlu.Rd | 92 man/as.matrix.cooccurrence.Rd | 64 man/as_conllu.Rd | 112 man/as_cooccurrence.Rd | 60 man/as_fasttext.Rd | 56 man/as_phrasemachine.Rd | 100 man/as_word2vec.Rd | 64 man/brussels_listings.Rd | 44 man/brussels_reviews.Rd | 52 man/brussels_reviews_anno.Rd | 120 man/brussels_reviews_w2v_embeddings_lemma_nl.Rd |only man/cbind_dependencies.Rd | 136 man/cbind_morphological.Rd | 118 man/cooccurrence.Rd | 242 - man/document_term_frequencies.Rd | 188 - man/document_term_frequencies_statistics.Rd | 68 man/document_term_matrix.Rd | 326 +- man/dtm_bind.Rd | 148 man/dtm_chisq.Rd | 118 man/dtm_colsums.Rd | 132 man/dtm_conform.Rd | 178 - man/dtm_cor.Rd | 60 man/dtm_remove_lowfreq.Rd | 80 man/dtm_remove_sparseterms.Rd | 74 man/dtm_remove_terms.Rd | 70 man/dtm_remove_tfidf.Rd | 104 man/dtm_reverse.Rd | 60 man/dtm_svd_similarity.Rd | 202 - man/dtm_tfidf.Rd | 62 man/keywords_collocation.Rd | 158 man/keywords_phrases.Rd | 220 - man/keywords_rake.Rd | 152 man/paste.data.frame.Rd | 90 man/predict.LDA.Rd | 218 - man/strsplit.data.frame.Rd | 102 man/syntaxpatterns.Rd | 22 man/syntaxrelation.Rd | 58 man/txt_collapse.Rd | 58 man/txt_contains.Rd | 88 man/txt_count.Rd | 58 man/txt_freq.Rd | 56 man/txt_grepl.Rd |only man/txt_highlight.Rd | 56 man/txt_next.Rd | 62 man/txt_nextgram.Rd | 90 man/txt_overlap.Rd | 50 man/txt_previous.Rd | 62 man/txt_previousgram.Rd | 90 man/txt_recode.Rd | 88 man/txt_recode_ngram.Rd | 100 man/txt_sample.Rd | 54 man/txt_sentiment.Rd | 234 - man/txt_show.Rd | 46 man/txt_tagsequence.Rd | 134 man/udpipe.Rd | 212 - man/udpipe_accuracy.Rd | 132 man/udpipe_annotate.Rd | 228 - man/udpipe_annotation_params.Rd | 64 man/udpipe_download_model.Rd | 380 +- man/udpipe_load_model.Rd | 104 man/udpipe_read_conllu.Rd | 46 man/udpipe_train.Rd | 258 - man/unique_identifier.Rd | 70 man/unlist_tokens.Rd | 50 vignettes/udpipe-annotation.Rmd | 366 +- vignettes/udpipe-parallel.Rmd | 224 - vignettes/udpipe-train.Rmd | 1108 +++--- vignettes/udpipe-tryitout.Rmd | 144 vignettes/udpipe-universe.Rmd | 82 vignettes/udpipe-usecase-postagging-lemmatisation.Rmd | 446 +- vignettes/udpipe-usecase-topicmodelling.Rmd | 530 +-- 121 files changed, 17577 insertions(+), 16100 deletions(-)
Title: Creates Simultaneous Testing Bands for QQ-Plots
Description: Provides functionality for creating Quantile-Quantile (QQ) and Probability-Probability (PP) plots with simultaneous
testing bands to asses significance of sample deviation from a reference distribution.
Author: Eric Weine [aut, cre],
Mary Sara McPeek [aut],
Abney Mark [aut]
Maintainer: Eric Weine <ericweine15@gmail.com>
Diff between qqconf versions 1.0.0 dated 2021-08-17 and 1.1.0 dated 2021-12-02
DESCRIPTION | 11 ++-- MD5 | 16 ++++-- R/one_sided.R | 80 ++++++++++++--------------------- build |only inst |only man/get_level_from_bounds_one_sided.Rd | 15 +++++- src/jointlevel_one_sided.c |only src/jointlevel_two_sided.c | 1 src/qqconf_init.c | 2 vignettes |only 10 files changed, 64 insertions(+), 61 deletions(-)
Title: Publication Quality Descriptive Statistics Tables
Description: Provides functions to create descriptive statistics tables for continuous and categorical variables.
By default, summary statistics such as mean, standard deviation, quantiles, minimum and maximum for continuous
variables and relative and absolute frequencies for categorical variables are calculated. 'DescrTab2' features a sophisticated algorithm to
choose appropriate test statistics for your data and provides p-values. On top of this, confidence intervals for group
differences of appropriated summary measures are automatically produces for two-group comparison.
Tables generated by 'DescrTab2' can be integrated in a variety of document formats, including .html, .tex and .docx documents.
'DescrTab2' also allows printing tables to console and saving table objects for later use.
Author: Jan Meis [aut, cre] (<https://orcid.org/0000-0001-5407-7220>),
Lukas Baumann [aut] (<https://orcid.org/0000-0001-7931-7470>),
Maximilian Pilz [aut] (<https://orcid.org/0000-0002-9685-1613>),
Lukas Sauer [aut] (<https://orcid.org/0000-0002-1340-9994>),
Lorenz Uhlmann [ctb],
Csilla van Lunteren [ctb],
Kevin Kunzmann [ctb],
Hao Zhu [ctb] (<https://orcid.org/0000-0002-3386-6076>)
Maintainer: Jan Meis <meis@imbi.uni-heidelberg.de>
Diff between DescrTab2 versions 2.0.7 dated 2021-03-15 and 2.1.7 dated 2021-12-02
DescrTab2-2.0.7/DescrTab2/inst/doc/maintenance_guide.R |only DescrTab2-2.0.7/DescrTab2/inst/doc/maintenance_guide.Rmd |only DescrTab2-2.0.7/DescrTab2/inst/doc/maintenance_guide.html |only DescrTab2-2.0.7/DescrTab2/inst/doc/test_choice_tree_pdf.R |only DescrTab2-2.0.7/DescrTab2/inst/doc/test_choice_tree_pdf.Rmd |only DescrTab2-2.0.7/DescrTab2/inst/doc/test_choice_tree_pdf.pdf |only DescrTab2-2.0.7/DescrTab2/inst/doc/usage_guide.R |only DescrTab2-2.0.7/DescrTab2/inst/doc/usage_guide.Rmd |only DescrTab2-2.0.7/DescrTab2/inst/doc/usage_guide.html |only DescrTab2-2.0.7/DescrTab2/inst/doc/validation_report.R |only DescrTab2-2.0.7/DescrTab2/inst/doc/validation_report.Rmd |only DescrTab2-2.0.7/DescrTab2/inst/doc/validation_report.html |only DescrTab2-2.0.7/DescrTab2/man/test_cat.Rd |only DescrTab2-2.0.7/DescrTab2/man/test_cont.Rd |only DescrTab2-2.0.7/DescrTab2/tests/testthat/test_console.R |only DescrTab2-2.0.7/DescrTab2/vignettes/maintenance_guide.Rmd |only 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DescrTab2-2.1.7/DescrTab2/tests/testthat/test_numeric_factors.R | 11 DescrTab2-2.1.7/DescrTab2/tests/testthat/test_options.R | 646 + DescrTab2-2.1.7/DescrTab2/tests/testthat/test_summary_stats.R |only DescrTab2-2.1.7/DescrTab2/tests/testthat/test_tests.R | 561 + DescrTab2-2.1.7/DescrTab2/tests/testthat/test_tex.R | 3 DescrTab2-2.1.7/DescrTab2/tests/testthat/test_word.R | 29 DescrTab2-2.1.7/DescrTab2/vignettes/a_usage_guide.Rmd |only DescrTab2-2.1.7/DescrTab2/vignettes/b_test_choice_tree_pdf.Rmd |only DescrTab2-2.1.7/DescrTab2/vignettes/c_other_software_comparison.Rmd |only DescrTab2-2.1.7/DescrTab2/vignettes/d_validation_statement.Rmd |only DescrTab2-2.1.7/DescrTab2/vignettes/e_maintenance_guide.Rmd |only DescrTab2-2.1.7/DescrTab2/vignettes/test_choice_tree.pdf |binary DescrTab2-2.1.7/DescrTab2/vignettes/test_choice_tree.tex | 41 DescrTab2-2.1.7/DescrTab2/vignettes/tex/test_choice_tree.aux |only DescrTab2-2.1.7/DescrTab2/vignettes/tex/test_choice_tree.fdb_latexmk |only DescrTab2-2.1.7/DescrTab2/vignettes/tex/test_choice_tree.fls |only DescrTab2-2.1.7/DescrTab2/vignettes/tex/test_choice_tree.log |only DescrTab2-2.1.7/DescrTab2/vignettes/tex/test_choice_tree.pdf |only DescrTab2-2.1.7/DescrTab2/vignettes/tex/test_choice_tree.synctex.gz |only DescrTab2-2.1.7/DescrTab2/vignettes/tex/test_choice_tree.tex | 40 DescrTab2-2.1.7/DescrTab2/vignettes/usage_guide.html |only DescrTab2-2.1.7/DescrTab2/vignettes/validation_report/aov/aov_dat_1.csv | 81 DescrTab2-2.1.7/DescrTab2/vignettes/validation_report/aov/aov_example_1.html | 76 DescrTab2-2.1.7/DescrTab2/vignettes/validation_report/aov/aov_sas_example_1.sas | 10 DescrTab2-2.1.7/DescrTab2/vignettes/validation_report/gen_sasdata_aov.R | 6 DescrTab2-2.1.7/DescrTab2/vignettes/validation_report/wilcox_1_sample |only DescrTab2-2.1.7/DescrTab2/vignettes/validation_report/wilcox_2_sample |only 143 files changed, 4706 insertions(+), 3325 deletions(-)
Title: A 'pkgdown' Template
Description: This is an accessible template for 'pkgdown'. It uses two
bootstrap themes, Flatly and Darkly and utilizes the
'prefers-color-scheme' CSS variable to automatically serve either of
the two based on user’s operating system setting, or allowing them to
manually toggle between them.
Author: Amir Masoud Abdol [aut, cre]
Maintainer: Amir Masoud Abdol <i@amirmasoudabdol.name>
Diff between preferably versions 0.3.1 dated 2021-05-02 and 0.4 dated 2021-12-02
preferably-0.3.1/preferably/inst/pkgdown/assets |only preferably-0.3.1/preferably/inst/pkgdown/templates |only preferably-0.4/preferably/DESCRIPTION | 8 ++-- preferably-0.4/preferably/MD5 | 36 +++++++++++--------- preferably-0.4/preferably/NEWS.md | 17 +++++++++ preferably-0.4/preferably/README.md | 18 +++++++--- preferably-0.4/preferably/build/vignette.rds |binary preferably-0.4/preferably/inst/doc/in-the-wild.Rmd | 6 +++ preferably-0.4/preferably/inst/doc/in-the-wild.html | 6 +++ preferably-0.4/preferably/inst/pkgdown/BS3 |only preferably-0.4/preferably/inst/pkgdown/BS5 |only preferably-0.4/preferably/vignettes/in-the-wild.Rmd | 6 +++ 12 files changed, 74 insertions(+), 23 deletions(-)
Title: Date-Time Types and Tools
Description: Provides a comprehensive library for date-time manipulations
using a new family of orthogonal date-time classes (durations, time
points, zoned-times, and calendars) that partition responsibilities so
that the complexities of time zones are only considered when they are
really needed. Capabilities include: date-time parsing, formatting,
arithmetic, extraction and updating of components, and rounding.
Author: Davis Vaughan [aut, cre],
RStudio [cph, fnd]
Maintainer: Davis Vaughan <davis@rstudio.com>
Diff between clock versions 0.5.0 dated 2021-10-29 and 0.6.0 dated 2021-12-02
DESCRIPTION | 6 MD5 | 90 ++-- NAMESPACE | 11 NEWS.md | 19 R/calendar.R | 147 +++++++ R/cpp11.R | 8 R/date.R | 256 +++++++++++++ R/duration.R | 43 +- R/gregorian-year-day.R | 86 ++++ R/gregorian-year-month-day.R | 109 +++++ R/gregorian-year-month-weekday.R | 72 +++ R/iso-year-week-day.R | 82 ++++ R/posixt.R | 191 +++++++++ R/quarterly-year-quarter-day.R | 99 +++++ R/time-point.R | 143 +++++++ inst/doc/recipes.R | 85 ++++ inst/doc/recipes.Rmd | 140 +++++++ inst/doc/recipes.html | 352 +++++++++++------- man/calendar-count-between.Rd |only man/date-count-between.Rd |only man/date_count_between.Rd |only man/iso-year-week-day-count-between.Rd |only man/posixt-count-between.Rd |only man/time_point_count_between.Rd |only man/year-day-count-between.Rd |only man/year-month-day-count-between.Rd |only man/year-month-weekday-count-between.Rd |only man/year-quarter-day-count-between.Rd |only src/cpp11.cpp | 16 src/duration.cpp | 131 ++++++ tests/testthat/_snaps/calendar.md | 45 ++ tests/testthat/_snaps/date.md | 16 tests/testthat/_snaps/duration.md | 32 + tests/testthat/_snaps/gregorian-year-day.md | 8 tests/testthat/_snaps/gregorian-year-month-day.md | 8 tests/testthat/_snaps/gregorian-year-month-weekday.md | 8 tests/testthat/_snaps/iso-year-week-day.md | 8 tests/testthat/_snaps/posixt.md | 16 tests/testthat/_snaps/quarterly-year-quarter-day.md | 8 tests/testthat/_snaps/time-point.md | 65 +++ tests/testthat/test-calendar.R | 31 + tests/testthat/test-date.R | 27 + tests/testthat/test-duration.R | 55 ++ tests/testthat/test-gregorian-year-day.R | 39 + tests/testthat/test-gregorian-year-month-day.R | 65 +++ tests/testthat/test-gregorian-year-month-weekday.R | 65 +++ tests/testthat/test-iso-year-week-day.R | 39 + tests/testthat/test-posixt.R | 78 +++ tests/testthat/test-quarterly-year-quarter-day.R | 56 ++ tests/testthat/test-time-point.R | 96 ++++ vignettes/recipes.Rmd | 140 +++++++ 51 files changed, 2814 insertions(+), 177 deletions(-)
Title: Quantification of Asymmetric Dependence
Description: A copula-based measure for quantifying asymmetry in dependence and associations. Documentation and theory about 'qad' is provided
by the paper by Junker, Griessenberger & Trutschnig (2021, <doi:10.1016/j.csda.2020.107058>), and the paper by Trutschnig (2011, <doi:10.1016/j.jmaa.2011.06.013>).
Author: Florian Griessenberger [aut, cre],
Robert R. Junker [aut],
Valentin Petzel [aut],
Wolfgang Trutschnig [aut]
Maintainer: Florian Griessenberger <florian.griessenberger@sbg.ac.at>
Diff between qad versions 1.0.0 dated 2021-02-27 and 1.0.1 dated 2021-12-02
qad-1.0.0/qad/man/figures/README-example-1.png |only qad-1.0.0/qad/man/figures/README-example-2.png |only qad-1.0.0/qad/man/figures/README-example-3.png |only qad-1.0.0/qad/man/figures/README-unnamed-chunk-2-1.png |only qad-1.0.0/qad/man/figures/README-unnamed-chunk-2-2.png |only qad-1.0.1/qad/DESCRIPTION | 15 ++-- qad-1.0.1/qad/MD5 | 43 +++++++++++--- qad-1.0.1/qad/NEWS.md | 52 +++++++++-------- qad-1.0.1/qad/README.md |only qad-1.0.1/qad/build |only qad-1.0.1/qad/inst/doc |only qad-1.0.1/qad/man/figures/README-unnamed-chunk-4-1.png |only qad-1.0.1/qad/man/figures/hex.png |only qad-1.0.1/qad/src/RcppExports.cpp | 5 + qad-1.0.1/qad/tests |only qad-1.0.1/qad/vignettes |only 16 files changed, 78 insertions(+), 37 deletions(-)
Title: Multistage Sampling Allocation and Sample Selection
Description: Multivariate optimal allocation for different domains in one and two stages stratified sample design. R2BEAT extends the Neyman (1934) – Tschuprow (1923) allocation method to the case of several variables, adopting a generalization of the Bethel’s proposal (1989).R2BEAT develops this methodology but, moreover, it allows to determine the sample allocation in the multivariate and multi-domains case of estimates for two-stage stratified samples. It also allows to perform both Primary Stage Units and Secondary Stage Units selection. This package requires the availability of ReGenesees, that can be installed from <https://github.com/DiegoZardetto/ReGenesees>.
Author: Andrea Fasulo,Giulio Barcaroli,Stefano Falorsi,Alessio Guandalini,Daniela Pagliuca,Marco Dionisio Terribili
Maintainer: Andrea Fasulo <fasulo@istat.it>
Diff between R2BEAT versions 1.0.3 dated 2021-06-24 and 1.0.4 dated 2021-12-02
R2BEAT-1.0.3/R2BEAT/R/StratSel.R |only R2BEAT-1.0.3/R2BEAT/R/prepareInputToAllocation.R |only R2BEAT-1.0.3/R2BEAT/R/sensitivity.R |only R2BEAT-1.0.3/R2BEAT/man/StratSel.Rd |only R2BEAT-1.0.3/R2BEAT/man/prepareInputToAllocation.Rd |only R2BEAT-1.0.3/R2BEAT/man/sensitivity.Rd |only R2BEAT-1.0.4/R2BEAT/DESCRIPTION | 10 R2BEAT-1.0.4/R2BEAT/MD5 | 69 R2BEAT-1.0.4/R2BEAT/NAMESPACE | 12 R2BEAT-1.0.4/R2BEAT/NEWS.md | 23 R2BEAT-1.0.4/R2BEAT/R/beatcv.R | 287 +- R2BEAT-1.0.4/R2BEAT/R/beth1.R | 393 +-- R2BEAT-1.0.4/R2BEAT/R/beth2.R | 442 ++-- R2BEAT-1.0.4/R2BEAT/R/buildFrameDF.R |only R2BEAT-1.0.4/R2BEAT/R/buildStrataDF.R |only R2BEAT-1.0.4/R2BEAT/R/eval_2stage.r |only R2BEAT-1.0.4/R2BEAT/R/input_to_beat.2st_1.R | 2 R2BEAT-1.0.4/R2BEAT/R/plot_sens.R |only R2BEAT-1.0.4/R2BEAT/R/prepareInputToAllocation1.R |only R2BEAT-1.0.4/R2BEAT/R/prepareInputToAllocation2.R |only R2BEAT-1.0.4/R2BEAT/R/select_PSU.R |only R2BEAT-1.0.4/R2BEAT/R/select_SSU.R | 80 R2BEAT-1.0.4/R2BEAT/R/sensitivity_min_SSU.R |only R2BEAT-1.0.4/R2BEAT/R/sensitivity_min_SSU2.R |only R2BEAT-1.0.4/R2BEAT/inst/doc/R2BEAT_methodology.html | 2 R2BEAT-1.0.4/R2BEAT/inst/doc/R2BEAT_workflow.html | 932 +++----- R2BEAT-1.0.4/R2BEAT/inst/doc/R2BEAT_workflow_from_frame.html | 1168 ++++------- R2BEAT-1.0.4/R2BEAT/inst/doc/index.html |only R2BEAT-1.0.4/R2BEAT/man/PSU_strat.Rd | 2 R2BEAT-1.0.4/R2BEAT/man/beatcv.Rd | 3 R2BEAT-1.0.4/R2BEAT/man/beth2.Rd | 54 R2BEAT-1.0.4/R2BEAT/man/deft_start.Rd | 2 R2BEAT-1.0.4/R2BEAT/man/design.Rd | 2 R2BEAT-1.0.4/R2BEAT/man/effst.Rd | 3 R2BEAT-1.0.4/R2BEAT/man/errors.Rd | 2 R2BEAT-1.0.4/R2BEAT/man/eval_2stage.Rd |only R2BEAT-1.0.4/R2BEAT/man/input_to_beat.2st_1.Rd | 10 R2BEAT-1.0.4/R2BEAT/man/input_to_beat.2st_2.Rd | 7 R2BEAT-1.0.4/R2BEAT/man/plot_sens.Rd |only R2BEAT-1.0.4/R2BEAT/man/prepareInputToAllocation1.Rd |only R2BEAT-1.0.4/R2BEAT/man/prepareInputToAllocation2.Rd |only R2BEAT-1.0.4/R2BEAT/man/rho.Rd | 2 R2BEAT-1.0.4/R2BEAT/man/select_PSU.Rd |only R2BEAT-1.0.4/R2BEAT/man/select_SSU.Rd | 48 R2BEAT-1.0.4/R2BEAT/man/sensitivity_min_SSU.Rd |only R2BEAT-1.0.4/R2BEAT/man/sensitivity_min_SSU2.Rd |only R2BEAT-1.0.4/R2BEAT/man/strata.Rd | 2 47 files changed, 1653 insertions(+), 1904 deletions(-)
Title: Multivariate Morphometric Analysis
Description: Tools for multivariate analyses of morphological data, wrapped in one package, to make the workflow convenient and fast. Statistical and graphical tools provide a comprehensive framework for checking and manipulating input data, statistical analyses, and visualization of results. Several methods are provided for the analysis of raw data, to make the dataset ready for downstream analyses. Integrated statistical methods include hierarchical classification, principal component analysis, principal coordinates analysis, non-metric multidimensional scaling, and multiple discriminant analyses: canonical, stepwise, and classificatory (linear, quadratic, and the non-parametric k nearest neighbours). The philosophy of the package will be described in Šlenker et al. (in prep).
Author: Marek Šlenker [aut, cre] (https://orcid.org/0000-0002-5919-890X)
Petr Koutecký [ctb] (https://orcid.org/0000-0002-3455-850X)
Karol Marhold [ctb] (https://orcid.org/0000-0002-7658-0844)
Maintainer: Marek Šlenker <marek.slenker@savba.sk>
Diff between MorphoTools2 versions 0.9.0 dated 2021-11-22 and 0.9.1 dated 2021-12-02
MorphoTools2-0.9.0/MorphoTools2/inst/CITATION |only MorphoTools2-0.9.1/MorphoTools2/DESCRIPTION | 12 ++-- MorphoTools2-0.9.1/MorphoTools2/MD5 | 21 ++++---- MorphoTools2-0.9.1/MorphoTools2/R/pcoa.calc.R | 25 +++++----- MorphoTools2-0.9.1/MorphoTools2/R/zzz.R | 2 MorphoTools2-0.9.1/MorphoTools2/README.md | 6 +- MorphoTools2-0.9.1/MorphoTools2/inst/doc/MorphoTools2_tutorial.R | 2 MorphoTools2-0.9.1/MorphoTools2/inst/doc/MorphoTools2_tutorial.Rmd | 4 - MorphoTools2-0.9.1/MorphoTools2/inst/doc/MorphoTools2_tutorial.pdf |binary MorphoTools2-0.9.1/MorphoTools2/tests/testthat/test.pcoa.calc.R | 7 +- MorphoTools2-0.9.1/MorphoTools2/tests/testthat/test.plot.points.pcoadata.R | 4 - MorphoTools2-0.9.1/MorphoTools2/vignettes/MorphoTools2_tutorial.Rmd | 4 - 12 files changed, 44 insertions(+), 43 deletions(-)
Title: Clustering Data with Non-Ignorable Missingness using
Semi-Parametric Mixture Models
Description: Clustering of data under a non-ignorable missingness mechanism. Clustering is achieved by a semi-parametric mixture model and missingness is managed by using the pattern-mixture approach. More details of the approach are available in Du Roy de Chaumaray et al. (2020) <arXiv:2009.07662>.
Author: Marie Du Roy de Chaumaray [aut],
Matthieu Marbac [aut, cre, cph]
Maintainer: Matthieu Marbac <matthieu.marbac-lourdelle@ensai.fr>
Diff between MNARclust versions 1.0.0 dated 2021-07-16 and 1.1.0 dated 2021-12-02
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- R/MNARclust.R | 4 ++-- R/tools.R | 14 +++++++------- man/MNARclust-package.Rd | 4 ++-- src/MNARclust.cpp | 2 +- 6 files changed, 20 insertions(+), 20 deletions(-)
Title: Tools to Visualize CM SAF NetCDF Data
Description: The Satellite Application Facility on Climate Monitoring (CM SAF)
is a ground segment of the European Organization for the Exploitation of
Meteorological Satellites (EUMETSAT) and one of EUMETSATs Satellite Application
Facilities. The CM SAF contributes to the sustainable monitoring of the climate
system by providing essential climate variables related to the energy and water
cycle of the atmosphere (<https://www.cmsaf.eu>). It is a joint cooperation of eight
National Meteorological and Hydrological Services.
The 'cmsafvis' R-package provides a collection of R-operators for the analysis and
visualization of CM SAF NetCDF data.
CM SAF climate data records are provided for free via (<https://wui.cmsaf.eu/safira>).
Detailed information and test data are provided on the CM SAF webpage
(<http://www.cmsaf.eu/R_toolbox>).
Author: Steffen Kothe [aut, cre],
Danny Parsons [ctb]
Maintainer: Steffen Kothe <Steffen.Kothe@dwd.de>
Diff between cmsafvis versions 1.1.8 dated 2021-11-02 and 1.1.9 dated 2021-12-02
DESCRIPTION | 11 +- MD5 | 42 +++++----- NAMESPACE | 1 NEWS.md | 9 ++ R/calculate_climatology_outfile.R | 2 R/cmsaf.hist.R | 4 - R/cmsaf.hovmoller.R | 4 - R/cmsaf.side.by.side.R | 4 - R/extractFinalOutfile.R | 2 R/extractOutfile.R | 2 R/extractOutfileMean.R | 2 R/fieldmean_ensemble.R | 22 +++-- R/fieldmean_plot.R | 1 R/getColors.R | 119 +++++++++++++++++------------- R/get_basename_vis.R |only R/plot_fieldmean.R | 32 +++++--- R/quicklook.R | 2 R/render_plot.R | 30 +++---- R/render_plot_side_by_side.R | 58 +++++++-------- R/render_region_plot.R | 28 +++---- build/partial.rdb |binary man/cmsafvis.Rd | 146 +++++++++++++++++++------------------- man/get_basename_vis.Rd |only 23 files changed, 285 insertions(+), 236 deletions(-)
Title: Tools for CM SAF NetCDF Data
Description: The Satellite Application Facility on Climate Monitoring (CM SAF)
is a ground segment of the European Organization for the Exploitation of
Meteorological Satellites (EUMETSAT) and one of EUMETSATs Satellite Application
Facilities. The CM SAF contributes to the sustainable monitoring of the climate
system by providing essential climate variables related to the energy and water
cycle of the atmosphere (<https://www.cmsaf.eu>). It is a joint cooperation of eight
National Meteorological and Hydrological Services.
The 'cmsafops' R-package provides a collection of R-operators for the analysis and
manipulation of CM SAF NetCDF formatted data. Other CF conform NetCDF data with time,
longitude and latitude dimension should be applicable, but there is no guarantee for
an error-free application.
CM SAF climate data records are provided for free via (<https://wui.cmsaf.eu/safira>).
Detailed information and test data are provided on the CM SAF webpage
(<http://www.cmsaf.eu/R_toolbox>).
Author: Steffen Kothe [aut, cre],
Danny Parsons [ctb]
Maintainer: Steffen Kothe <Steffen.Kothe@dwd.de>
Diff between cmsafops versions 1.2.1 dated 2021-10-14 and 1.2.2 dated 2021-12-02
DESCRIPTION | 8 MD5 | 302 ++-- NEWS.md | 4 R/acsaf_box_mergetime.R | 856 +++++------ R/arith_wrapper.R | 8 R/arithc_wrapper.R | 8 R/box_mergetime.R | 4 R/cmsaf.abs.R | 2 R/cmsaf.cat.R | 2 R/cmsaf.detrend.R | 2 R/cmsaf.regres.R | 2 R/cmsaf.sub.rel.R | 2 R/dayrange.R | 2 R/dayx_wrapper.R | 16 R/extract.level.R | 2 R/extract.period.R | 2 R/fld_cor_covar_wrapper.R | 4 R/fldx_wrapper.R | 14 R/gridboxx_wrapper.R | 14 R/hourx_wrapper.R | 4 R/merx_wrapper.R | 2 R/mon.anomaly.R | 2 R/mon.anomaly.climatology.R | 2 R/mon_num_wrapper.R | 6 R/mondaymean.R | 2 R/monx_wrapper.R | 16 R/multimonmean.R | 2 R/multimonsum.R | 2 R/remap.R | 2 R/runx_wrapper.R | 12 R/seas.anomaly.R | 2 R/seasx_wrapper.R | 8 R/sellonlatbox.R | 2 R/selmon.R | 2 R/selperiod.R | 2 R/selpoint.R | 2 R/selpoint.multi.R | 2 R/seltime.R | 2 R/selyear.R | 2 R/trend.R | 2 R/trend_advanced.R | 2 R/wfldmean.R | 6 R/xdpm_wrapper.R | 4 R/ydaymean.R | 2 R/ydayx_wrapper.R | 10 R/ydrunx_wrapper.R | 6 R/year.anomaly.R | 2 R/yearmean.R | 2 R/yearsum.R | 2 R/yearx_wrapper.R | 10 R/ymonx_wrapper.R | 10 R/yseasx_wrapper.R | 8 R/zonx_wrapper.R | 4 build/partial.rdb |binary man/cmsafops.Rd | 280 +-- man/wfldmean.Rd | 6 tests/testthat/test_box_mergetime.R | 2310 +++++++++++++++---------------- tests/testthat/test_cmsaf.abs.R | 406 ++--- tests/testthat/test_cmsaf.add.R | 2 tests/testthat/test_cmsaf.addc.R | 1954 +++++++++++++------------- tests/testthat/test_cmsaf.cat.R | 1558 ++++++++++----------- tests/testthat/test_cmsaf.detrend.R | 394 ++--- tests/testthat/test_cmsaf.div.R | 1978 +++++++++++++------------- tests/testthat/test_cmsaf.divc.R | 1808 ++++++++++++------------ tests/testthat/test_cmsaf.mul.R | 1944 +++++++++++++------------- tests/testthat/test_cmsaf.mulc.R | 1946 +++++++++++++------------- tests/testthat/test_cmsaf.regres.R | 378 ++--- tests/testthat/test_cmsaf.sub.R | 1890 ++++++++++++------------- tests/testthat/test_cmsaf.subc.R | 1934 +++++++++++++------------- tests/testthat/test_dayavg.R | 1376 +++++++++--------- tests/testthat/test_daymax.R | 1376 +++++++++--------- tests/testthat/test_daymean.R | 1376 +++++++++--------- tests/testthat/test_daymin.R | 1376 +++++++++--------- tests/testthat/test_daypctl.R | 1376 +++++++++--------- tests/testthat/test_dayrange.R | 1256 ++++++++--------- tests/testthat/test_daysd.R | 1376 +++++++++--------- tests/testthat/test_daysum.R | 1376 +++++++++--------- tests/testthat/test_dayvar.R | 1376 +++++++++--------- tests/testthat/test_divdpm.R | 1180 +++++++-------- tests/testthat/test_extract.level.R | 2438 ++++++++++++++++----------------- tests/testthat/test_extract.period.R | 744 +++++----- tests/testthat/test_fldcor.R | 168 +- tests/testthat/test_fldcovar.R | 168 +- tests/testthat/test_fldmax.R | 392 ++--- tests/testthat/test_fldmean.R | 390 ++--- tests/testthat/test_fldmin.R | 390 ++--- tests/testthat/test_fldrange.R | 392 ++--- tests/testthat/test_fldsd.R | 392 ++--- tests/testthat/test_fldsum.R | 392 ++--- tests/testthat/test_gridboxmax.R | 244 +-- tests/testthat/test_gridboxmean.R | 244 +-- tests/testthat/test_gridboxmin.R | 244 +-- tests/testthat/test_gridboxrange.R | 244 +-- tests/testthat/test_gridboxsd.R | 244 +-- tests/testthat/test_gridboxsum.R | 244 +-- tests/testthat/test_gridboxvar.R | 244 +-- tests/testthat/test_hourmean.R | 1376 +++++++++--------- tests/testthat/test_hoursum.R | 1376 +++++++++--------- tests/testthat/test_levbox_mergetime.R | 192 +- tests/testthat/test_mermean.R | 184 +- tests/testthat/test_monavg.R | 422 ++--- tests/testthat/test_mondaymean.R | 2 tests/testthat/test_monmax.R | 412 ++--- tests/testthat/test_monmean.R | 410 ++--- tests/testthat/test_monmin.R | 410 ++--- tests/testthat/test_monpctl.R | 428 ++--- tests/testthat/test_monsd.R | 416 ++--- tests/testthat/test_monsum.R | 414 ++--- tests/testthat/test_monvar.R | 428 ++--- tests/testthat/test_runmax.R | 188 +- tests/testthat/test_runmean.R | 192 +- tests/testthat/test_runmin.R | 190 +- tests/testthat/test_runrange.R | 172 +- tests/testthat/test_runsd.R | 188 +- tests/testthat/test_runsum.R | 190 +- tests/testthat/test_seassd.R | 260 +-- tests/testthat/test_seasvar.R | 260 +-- tests/testthat/test_sellonlatbox.R | 2264 +++++++++++++++--------------- tests/testthat/test_selmon.R | 1834 ++++++++++++------------ tests/testthat/test_selperiod.R | 1832 ++++++++++++------------ tests/testthat/test_selpoint.R | 1728 +++++++++++------------ tests/testthat/test_seltime.R | 1518 ++++++++++---------- tests/testthat/test_selyear.R | 1832 ++++++++++++------------ tests/testthat/test_wfldmean.R | 382 ++--- tests/testthat/test_ydaymax.R | 534 +++---- tests/testthat/test_ydaymean.R | 508 +++--- tests/testthat/test_ydaymin.R | 534 +++---- tests/testthat/test_ydayrange.R | 466 +++--- tests/testthat/test_ydaysd.R | 466 +++--- tests/testthat/test_ydaysum.R | 534 +++---- tests/testthat/test_ydrunmean.R | 242 +-- tests/testthat/test_ydrunsd.R | 246 +-- tests/testthat/test_ydrunsum.R | 238 +-- tests/testthat/test_year.anomaly.R | 386 ++--- tests/testthat/test_yearmax.R | 406 ++--- tests/testthat/test_yearmean.R | 388 ++--- tests/testthat/test_yearmin.R | 406 ++--- tests/testthat/test_yearrange.R | 406 ++--- tests/testthat/test_yearsd.R | 406 ++--- tests/testthat/test_yearsum.R | 396 ++--- tests/testthat/test_yearvar.R | 406 ++--- tests/testthat/test_ymonmax.R | 886 +++++------ tests/testthat/test_ymonmean.R | 408 ++--- tests/testthat/test_ymonmin.R | 408 ++--- tests/testthat/test_ymonsd.R | 414 ++--- tests/testthat/test_ymonsum.R | 408 ++--- tests/testthat/test_yseasmax.R | 404 ++--- tests/testthat/test_yseasmean.R | 404 ++--- tests/testthat/test_yseasmin.R | 404 ++--- tests/testthat/test_yseassd.R | 408 ++--- tests/testthat/test_zonmean.R | 176 +- tests/testthat/test_zonsum.R | 176 +- 152 files changed, 36086 insertions(+), 36084 deletions(-)
Title: A Toolbox for CM SAF NetCDF Data
Description: The Satellite Application Facility on Climate Monitoring (CM SAF)
is a ground segment of the European Organization for the Exploitation of
Meteorological Satellites (EUMETSAT) and one of EUMETSATs Satellite Application
Facilities. The CM SAF contributes to the sustainable monitoring of the climate
system by providing essential climate variables related to the energy and water
cycle of the atmosphere (<https://www.cmsaf.eu>). It is a joint cooperation of eight
National Meteorological and Hydrological Services.
The 'cmsaf' R-package includes a 'shiny' based interface for an easy application of
the 'cmsafops' and 'cmsafvis' packages - the CM SAF R Toolbox. The Toolbox offers an
easy way to prepare, manipulate, analyse and visualize CM SAF NetCDF formatted data.
Other CF conform NetCDF data with time, longitude and latitude dimension should be
applicable, but there is no guarantee for an error-free application.
CM SAF climate data records are provided for free via (<https://wui.cmsaf.eu/safira>).
Detailed information and test data are provided on the CM SAF webpage
(<http://www.cmsaf.eu/R_toolbox>).
Author: Steffen Kothe [aut, cre],
Danny Parsons [ctb]
Maintainer: Steffen Kothe <Steffen.Kothe@dwd.de>
Diff between cmsaf versions 3.3.0 dated 2021-10-14 and 3.3.1 dated 2021-12-02
DESCRIPTION | 8 - MD5 | 15 +-- NEWS.md | 8 + build/partial.rdb |binary inst/WORDLIST | 7 + inst/toolbox/global.R | 2 inst/toolbox/server.R | 157 +++++++++++++++++++++++++++++++--- inst/toolbox/ui.R | 13 ++ inst/toolbox/www/images/pal_larry.png |only 9 files changed, 183 insertions(+), 27 deletions(-)
Title: Simultaneous Semi-Parametric Estimation of Clustering and
Regression
Description: Parameter estimation of regression models with fixed group effects, when the group variable is missing while group-related variables are available. Parametric and semi-parametric approaches described in Marbac et al. (2020) <arXiv:2012.14159> are implemented.
Author: Matthieu Marbac [aut, cre, cph],
Mohammed Sedki [aut],
Christophe Biernacki [aut],
Vincent Vandewalle [aut]
Maintainer: Matthieu Marbac <matthieu.marbac-lourdelle@ensai.fr>
Diff between ClusPred versions 1.0.0 dated 2021-06-18 and 1.1.0 dated 2021-12-02
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- R/Singleblock_algo_NP.R | 2 +- R/cluspred.R | 4 ++-- man/ClusPred-package.Rd | 4 ++-- src/ClusPred.cpp | 6 +++--- 6 files changed, 16 insertions(+), 16 deletions(-)
Title: Calculates Basic Network Measures Commonly Used in Network
Medicine
Description: Calculates network measures such as Largest Connected Component (LCC), Proximity, Separation, Jaccard Index,
along with permutation, when needed.
Author: Deisy Gysi
Maintainer: Deisy Morselli Gysi <deisy.ccnr@gmail.com>
Diff between NetSci versions 0.1.1 dated 2021-08-03 and 0.1.2 dated 2021-12-02
DESCRIPTION | 8 +- MD5 | 16 +++- NAMESPACE | 10 +++ R/Global.R | 16 ++++ R/Internal.R | 134 ++++++++++++++++++++++++++++++++++++++++- R/Separation.R | 19 ++--- R/extract_LCC.R |only R/separation_Significance.R |only man/extract_LCC.Rd |only man/separation.Rd | 18 +++++ man/separation_Significance.Rd |only 11 files changed, 198 insertions(+), 23 deletions(-)
Title: Required 'libphonenumber' jars for the 'dialr' Package
Description: Collects 'libphonenumber' jars required for the
'dialr' package.
Author: Danny Smith [aut, cre],
Google Inc. [ctb, cph] (libphonenumber),
Vonage Holdings Corp. [ctb, cph] (libphonenumber),
Ian Galpin [ctb, cph] (libphonenumber),
Ben Gertzfield [ctb, cph] (libphonenumber)
Maintainer: Danny Smith <danny@gorcha.org>
Diff between dialrjars versions 8.12.29 dated 2021-08-23 and 8.12.38 dated 2021-12-02
dialrjars-8.12.29/dialrjars/inst/java/carrier-1.155.jar |only dialrjars-8.12.29/dialrjars/inst/java/geocoder-2.165.jar |only dialrjars-8.12.29/dialrjars/inst/java/libphonenumber-8.12.29.jar |only dialrjars-8.12.29/dialrjars/inst/java/prefixmapper-2.165.jar |only dialrjars-8.12.38/dialrjars/DESCRIPTION | 6 dialrjars-8.12.38/dialrjars/MD5 | 12 - dialrjars-8.12.38/dialrjars/NEWS.md | 80 ++++++++++ dialrjars-8.12.38/dialrjars/inst/java/carrier-1.164.jar |only dialrjars-8.12.38/dialrjars/inst/java/geocoder-2.174.jar |only dialrjars-8.12.38/dialrjars/inst/java/libphonenumber-8.12.38.jar |only dialrjars-8.12.38/dialrjars/inst/java/prefixmapper-2.174.jar |only 11 files changed, 89 insertions(+), 9 deletions(-)
Title: Elastic Analysis of Sparse, Dense and Irregular Curves
Description: Provides functions to align curves and to compute mean curves based on the
elastic distance defined in the square-root-velocity framework. For more details on
this framework see Srivastava and Klassen (2016, <doi:10.1007/978-1-4939-4020-2>).
For more theoretical details on our methods and algorithms see
Steyer et al. (2021, <arXiv:2104.11039>).
Author: Lisa Steyer <lisa.steyer@hu-berlin.de>
Maintainer: Lisa Steyer <lisa.steyer@hu-berlin.de>
Diff between elasdics versions 0.1.3 dated 2021-10-28 and 0.1.4 dated 2021-12-02
DESCRIPTION | 6 +++--- MD5 | 4 ++-- R/align_curves.R | 2 +- 3 files changed, 6 insertions(+), 6 deletions(-)
Title: Propensity Score Weighting for Causal Inference with
Observational Studies and Randomized Trials
Description: Supports propensity score weighting analysis of observational studies and randomized trials. Enables the estimation and inference of average causal effects with binary and multiple treatments using overlap weights (ATO), inverse probability of treatment weights (ATE), average treatment effect among the treated weights (ATT), matching weights (ATM) and entropy weights (ATEN), with and without propensity score trimming. These weights are members of the family of balancing weights introduced in Li, Morgan and Zaslavsky (2018) <doi:10.1080/01621459.2016.1260466> and Li and Li (2019) <doi:10.1214/19-AOAS1282>.
Author: Tianhui Zhou [aut, cre],
Guangyu Tong [aut],
Fan Li [aut],
Laine Thomas [aut],
Fan Li [aut]
Maintainer: Tianhui Zhou <tianhui.zhou@duke.edu>
Diff between PSweight versions 1.1.5 dated 2021-10-28 and 1.1.6 dated 2021-12-02
DESCRIPTION | 9 +++++---- MD5 | 7 ++++++- build |only inst |only vignettes |only 5 files changed, 11 insertions(+), 5 deletions(-)
Title: Functions for the Japanese Regional Mesh Codes ('JIS X 0410')
Description: Functions for the Japanese regional mesh codes defined in 'JIS
X 0410'
(<https://www.jisc.go.jp/app/jis/general/GnrJISNumberNameSearchList?show&jisStdNo=X0410>).
Conversion between regional mesh codes and longitude/latitude, and
between mesh codes of different scales.
Author: Mizuki Uchida [aut, cre]
Maintainer: Mizuki Uchida <uchidamizuki@vivaldi.net>
Diff between japanmesh versions 0.1.0 dated 2021-11-19 and 0.1.1 dated 2021-12-02
japanmesh-0.1.0/japanmesh/R/sfc.R |only japanmesh-0.1.0/japanmesh/R/zoom.R |only japanmesh-0.1.0/japanmesh/man/sfc.Rd |only japanmesh-0.1.0/japanmesh/tests/testthat/test-sfc.R |only japanmesh-0.1.1/japanmesh/DESCRIPTION | 35 japanmesh-0.1.1/japanmesh/MD5 | 83 +- japanmesh-0.1.1/japanmesh/NAMESPACE | 4 japanmesh-0.1.1/japanmesh/NEWS.md | 13 japanmesh-0.1.1/japanmesh/R/XY.R | 19 japanmesh-0.1.1/japanmesh/R/data.R |only japanmesh-0.1.1/japanmesh/R/deprecated.R |only japanmesh-0.1.1/japanmesh/R/distance.R | 12 japanmesh-0.1.1/japanmesh/R/grid.R |only japanmesh-0.1.1/japanmesh/R/japanmesh.R | 14 japanmesh-0.1.1/japanmesh/R/line.R | 16 japanmesh-0.1.1/japanmesh/R/mesh.R | 190 ++--- japanmesh-0.1.1/japanmesh/R/move.R | 11 japanmesh-0.1.1/japanmesh/R/sf.R |only japanmesh-0.1.1/japanmesh/R/subdivide.R |only japanmesh-0.1.1/japanmesh/R/utils.R | 2 japanmesh-0.1.1/japanmesh/README.md | 362 +++------- japanmesh-0.1.1/japanmesh/data |only japanmesh-0.1.1/japanmesh/man/bbox_to_mesh.Rd |only japanmesh-0.1.1/japanmesh/man/figures/README-unnamed-chunk-10-1.png |only japanmesh-0.1.1/japanmesh/man/figures/README-unnamed-chunk-11-1.png |only japanmesh-0.1.1/japanmesh/man/figures/README-unnamed-chunk-12-1.png |only japanmesh-0.1.1/japanmesh/man/figures/README-unnamed-chunk-13-1.png |only japanmesh-0.1.1/japanmesh/man/figures/README-unnamed-chunk-14-1.png |only japanmesh-0.1.1/japanmesh/man/figures/README-unnamed-chunk-4-1.png |binary japanmesh-0.1.1/japanmesh/man/figures/README-unnamed-chunk-5-1.png |only japanmesh-0.1.1/japanmesh/man/figures/README-unnamed-chunk-7-1.png |binary japanmesh-0.1.1/japanmesh/man/figures/README-unnamed-chunk-8-1.png |binary japanmesh-0.1.1/japanmesh/man/figures/README-unnamed-chunk-9-1.png |binary japanmesh-0.1.1/japanmesh/man/figures/lifecycle-archived.svg |only japanmesh-0.1.1/japanmesh/man/figures/lifecycle-defunct.svg |only japanmesh-0.1.1/japanmesh/man/figures/lifecycle-deprecated.svg |only japanmesh-0.1.1/japanmesh/man/figures/lifecycle-experimental.svg |only japanmesh-0.1.1/japanmesh/man/figures/lifecycle-maturing.svg |only japanmesh-0.1.1/japanmesh/man/figures/lifecycle-questioning.svg |only japanmesh-0.1.1/japanmesh/man/figures/lifecycle-stable.svg |only japanmesh-0.1.1/japanmesh/man/figures/lifecycle-superseded.svg |only japanmesh-0.1.1/japanmesh/man/geometry_to_mesh.Rd |only japanmesh-0.1.1/japanmesh/man/japanmesh.Rd |only japanmesh-0.1.1/japanmesh/man/mesh_city2015.Rd |only japanmesh-0.1.1/japanmesh/man/mesh_class.Rd | 2 japanmesh-0.1.1/japanmesh/man/mesh_distance.Rd | 2 japanmesh-0.1.1/japanmesh/man/mesh_grid.Rd |only japanmesh-0.1.1/japanmesh/man/mesh_line.Rd | 2 japanmesh-0.1.1/japanmesh/man/mesh_move.Rd | 4 japanmesh-0.1.1/japanmesh/man/mesh_neighbor.Rd | 4 japanmesh-0.1.1/japanmesh/man/mesh_subdivide.Rd |only japanmesh-0.1.1/japanmesh/man/mesh_to_geometry.Rd |only japanmesh-0.1.1/japanmesh/man/mesh_zoomin.Rd | 9 japanmesh-0.1.1/japanmesh/man/mesh_zoomout.Rd | 9 japanmesh-0.1.1/japanmesh/man/point_to_mesh.Rd | 6 japanmesh-0.1.1/japanmesh/tests/testthat/test-XY.R | 37 - japanmesh-0.1.1/japanmesh/tests/testthat/test-grid.R |only japanmesh-0.1.1/japanmesh/tests/testthat/test-sf.R |only japanmesh-0.1.1/japanmesh/tests/testthat/test-zoom.R | 17 59 files changed, 438 insertions(+), 415 deletions(-)
More information about easyDifferentialGeneCoexpression at CRAN
Permanent link
Title: Automatic Structural Time Series Models
Description: Automatic model selection for structural time series decomposition into trend, cycle, and seasonal components, plus optionality for structural interpolation, using the Kalman filter.
Koopman, Siem Jan and Marius Ooms (2012) "Forecasting Economic Time Series Using Unobserved Components Time Series Models" <doi:10.1093/oxfordhb/9780195398649.013.0006>.
Kim, Chang-Jin and Charles R. Nelson (1999) "State-Space Models with Regime Switching: Classical and Gibbs-Sampling Approaches with Applications" <doi:10.7551/mitpress/6444.001.0001><http://econ.korea.ac.kr/~cjkim/>.
Author: Alex Hubbard
Maintainer: Alex Hubbard <hubbard.alex@gmail.com>
Diff between autostsm versions 2.0 dated 2021-11-08 and 2.1 dated 2021-12-02
DESCRIPTION | 11 MD5 | 44 ++- R/data.R | 7 R/stsm_detect_cycle.R | 16 - R/stsm_detect_multiplicative.R | 6 R/stsm_detect_seasonality.R | 26 +- R/stsm_detect_trend.R | 81 ++++++- R/stsm_estimate.R | 134 ++++++++--- R/stsm_forecast.R | 100 ++++---- R/stsm_init_pars.R | 64 +++-- R/stsm_na_kalman.R | 3 R/stsm_ssm.R | 11 data/DGS5.RData |only inst/doc/autostsm_vignette.R | 150 +++++++++++++ inst/doc/autostsm_vignette.Rmd | 162 +++++++++++++- inst/doc/autostsm_vignette.html | 454 ++++++++++++++++++++++++++-------------- man/DGS5.Rd |only man/stsm_detect_cycle.Rd | 3 man/stsm_detect_seasonality.Rd | 3 man/stsm_detect_trend.Rd | 109 +++++---- man/stsm_estimate.Rd | 35 ++- man/stsm_forecast.Rd | 3 man/stsm_init_pars.Rd | 9 vignettes/autostsm_vignette.Rmd | 162 +++++++++++++- 24 files changed, 1209 insertions(+), 384 deletions(-)
Title: Computation of Satellite Position
Description: Provides basic functionalities to calculate the position of
satellites given a known state vector. The package includes implementations
of the SGP4 and SDP4 simplified perturbation models to propagate orbital
state vectors, as well as utilities to read TLE files and convert coordinates
between different frames of reference. Several of the functionalities of the
package (including the high-precision numerical orbit propagator) require
the coefficients and data included in the 'asteRiskData' package, available
in a 'drat' repository. To install this data package, run
'install.packages("asteRiskData", repos="https://rafael-ayala.github.io/drat/")'.
Felix R. Hoots, Ronald L. Roehrich and T.S. Kelso (1988) <https://celestrak.com/NORAD/documentation/spacetrk.pdf>.
David Vallado, Paul Crawford, Richard Hujsak and T.S. Kelso (2012) <doi:10.2514/6.2006-6753>.
Felix R. Hoots, Paul W. Schumacher Jr. and Robert A. Glover (2014) <doi:10.2514/1.9161>.
Author: Rafael Ayala [aut, cre] (<https://orcid.org/0000-0002-9332-4623>),
Daniel Ayala [aut] (<https://orcid.org/0000-0003-2095-1009>),
David Ruiz [aut] (<https://orcid.org/0000-0003-4460-5493>),
Lara Selles Vidal [aut] (<https://orcid.org/0000-0003-2537-6824>)
Maintainer: Rafael Ayala <rafael.ayala@oist.jp>
Diff between asteRisk versions 1.1.0 dated 2021-07-05 and 1.2.0 dated 2021-12-02
asteRisk-1.1.0/asteRisk/R/hpopConstants.R |only asteRisk-1.1.0/asteRisk/R/radau_tests.R |only asteRisk-1.1.0/asteRisk/man/ECEFtoGCRF.Rd |only asteRisk-1.1.0/asteRisk/man/ECEFtoLATLON.Rd |only asteRisk-1.1.0/asteRisk/man/GCRFtoECEF.Rd |only asteRisk-1.1.0/asteRisk/man/TEMEtoECEF.Rd |only asteRisk-1.2.0/asteRisk/DESCRIPTION | 8 asteRisk-1.2.0/asteRisk/MD5 | 70 asteRisk-1.2.0/asteRisk/NAMESPACE | 11 asteRisk-1.2.0/asteRisk/NEWS | 13 asteRisk-1.2.0/asteRisk/R/SOFAfunctions.R | 171 -- asteRisk-1.2.0/asteRisk/R/auxiliaryFunctions.R | 21 asteRisk-1.2.0/asteRisk/R/constants.R | 159 -- asteRisk-1.2.0/asteRisk/R/coordinatesTransformations.R | 108 - asteRisk-1.2.0/asteRisk/R/coordinatesTransformations_auxiliaryFunctions.R |only asteRisk-1.2.0/asteRisk/R/fileParsers.R | 253 ++- asteRisk-1.2.0/asteRisk/R/hpop.R | 5 asteRisk-1.2.0/asteRisk/R/hpop_acceleration.R | 164 -- asteRisk-1.2.0/asteRisk/R/hpop_auxiliaryFunctions.R | 85 - asteRisk-1.2.0/asteRisk/R/models.R | 114 - asteRisk-1.2.0/asteRisk/R/nrlmsise00_model.R | 124 + asteRisk-1.2.0/asteRisk/build/vignette.rds |binary asteRisk-1.2.0/asteRisk/inst/SGP4-VER.TLE |only asteRisk-1.2.0/asteRisk/inst/doc/asteRisk.R | 90 - asteRisk-1.2.0/asteRisk/inst/doc/asteRisk.Rmd | 41 asteRisk-1.2.0/asteRisk/inst/doc/asteRisk.html | 780 +++++----- asteRisk-1.2.0/asteRisk/inst/unitTests/test_all.R | 49 asteRisk-1.2.0/asteRisk/man/GCRFtoITRF.Rd |only asteRisk-1.2.0/asteRisk/man/GCRFtoLATLON.Rd | 2 asteRisk-1.2.0/asteRisk/man/ITRFtoGCRF.Rd |only asteRisk-1.2.0/asteRisk/man/ITRFtoLATLON.Rd |only asteRisk-1.2.0/asteRisk/man/LATLONtoGCRF.Rd |only asteRisk-1.2.0/asteRisk/man/LATLONtoITRF.Rd |only asteRisk-1.2.0/asteRisk/man/TEMEtoITRF.Rd |only asteRisk-1.2.0/asteRisk/man/TEMEtoLATLON.Rd | 4 asteRisk-1.2.0/asteRisk/man/hpop.Rd | 15 asteRisk-1.2.0/asteRisk/man/readGLONASSNavigationRINEX.Rd | 34 asteRisk-1.2.0/asteRisk/man/readGPSNavigationRINEX.Rd | 90 - asteRisk-1.2.0/asteRisk/man/sdp4.Rd | 2 asteRisk-1.2.0/asteRisk/man/sgdp4.Rd | 2 asteRisk-1.2.0/asteRisk/man/sgp4.Rd | 2 asteRisk-1.2.0/asteRisk/vignettes/asteRisk.Rmd | 41 asteRisk-1.2.0/asteRisk/vignettes/figures |only 43 files changed, 1322 insertions(+), 1136 deletions(-)
Title: The Uniform Manifold Approximation and Projection (UMAP) Method
for Dimensionality Reduction
Description: An implementation of the Uniform Manifold Approximation and
Projection dimensionality reduction by McInnes et al. (2018)
<arXiv:1802.03426>. It also provides means to transform new data and to
carry out supervised dimensionality reduction. An implementation of the
related LargeVis method of Tang et al. (2016) <arXiv:1602.00370> is also
provided. This is a complete re-implementation in R (and C++, via the 'Rcpp'
package): no Python installation is required. See the uwot website
(<https://github.com/jlmelville/uwot>) for more documentation and examples.
Author: James Melville [aut, cre],
Aaron Lun [ctb],
Mohamed Nadhir Djekidel [ctb],
Yuhan Hao [ctb]
Maintainer: James Melville <jlmelville@gmail.com>
Diff between uwot versions 0.1.10 dated 2020-12-15 and 0.1.11 dated 2021-12-02
uwot-0.1.10/uwot/src/optimize.cpp |only uwot-0.1.11/uwot/DESCRIPTION | 11 uwot-0.1.11/uwot/MD5 | 73 - uwot-0.1.11/uwot/NAMESPACE | 26 uwot-0.1.11/uwot/NEWS.md | 74 + uwot-0.1.11/uwot/R/RcppExports.R | 16 uwot-0.1.11/uwot/R/affinity.R | 306 ++--- uwot-0.1.11/uwot/R/bigstatsr_init.R |only uwot-0.1.11/uwot/R/init.R | 386 ++++-- uwot-0.1.11/uwot/R/neighbors.R | 8 uwot-0.1.11/uwot/R/rspectra_init.R |only uwot-0.1.11/uwot/R/transform.R | 284 +++-- uwot-0.1.11/uwot/R/util.R | 53 uwot-0.1.11/uwot/R/uwot.R | 510 ++++++--- uwot-0.1.11/uwot/inst/include/RcppPerpendicular.h | 109 + uwot-0.1.11/uwot/inst/include/uwot/coords.h |only uwot-0.1.11/uwot/inst/include/uwot/epoch.h |only uwot-0.1.11/uwot/inst/include/uwot/gradient.h | 61 + uwot-0.1.11/uwot/inst/include/uwot/optimize.h | 178 +-- uwot-0.1.11/uwot/inst/include/uwot/sampler.h | 26 uwot-0.1.11/uwot/inst/include/uwot/tauprng.h | 6 uwot-0.1.11/uwot/inst/include/uwot/update.h |only uwot-0.1.11/uwot/man/load_uwot.Rd | 128 +- uwot-0.1.11/uwot/man/lvish.Rd | 815 +++++++------- uwot-0.1.11/uwot/man/save_uwot.Rd | 154 +- uwot-0.1.11/uwot/man/tumap.Rd | 913 ++++++++-------- uwot-0.1.11/uwot/man/umap.Rd | 1075 ++++++++++--------- uwot-0.1.11/uwot/man/umap_transform.Rd | 313 +++-- uwot-0.1.11/uwot/src/RcppExports.cpp | 95 - uwot-0.1.11/uwot/src/nn_parallel.h | 9 uwot-0.1.11/uwot/src/r_uwot.cpp |only uwot-0.1.11/uwot/src/rng.h | 80 + uwot-0.1.11/uwot/src/rparallel.h |only uwot-0.1.11/uwot/src/rprogress.h |only uwot-0.1.11/uwot/tests/testthat.R | 8 uwot-0.1.11/uwot/tests/testthat/helper_data.R | 2 uwot-0.1.11/uwot/tests/testthat/test_errors.R | 3 uwot-0.1.11/uwot/tests/testthat/test_normlaplacian.R |only uwot-0.1.11/uwot/tests/testthat/test_optonly.R |only uwot-0.1.11/uwot/tests/testthat/test_output.R | 75 + uwot-0.1.11/uwot/tests/testthat/test_pca.R | 111 + uwot-0.1.11/uwot/tests/testthat/test_spectral.R | 135 -- uwot-0.1.11/uwot/tests/testthat/test_transform.R | 27 43 files changed, 3570 insertions(+), 2500 deletions(-)
Title: Fast Calculation of the Likelihood of a Stochastic Survival
Model
Description: Given exposure and survival time series as well as parameter values, GUTS allows for the fast calculation of the survival probabilities as well as the logarithm of the corresponding likelihood.
Author: Carlo Albert <carlo.albert@eawag.ch>, Sören Vogel <soeren.vogel@posteo.ch>, Oliver Jakoby <oliver.jakoby@rifcon.de>, Alexander Singer <alexander.singer@rifcon.de> and Dirk Nickisch <dirk.nickisch@rifcon.de>
Maintainer: Oliver Jakoby <oliver.jakoby@rifcon.de>
Diff between GUTS versions 1.1.1 dated 2019-07-05 and 1.2 dated 2021-12-02
GUTS-1.1.1/GUTS/src/guts_engine.cpp |only GUTS-1.1.1/GUTS/src/init.c |only GUTS-1.2/GUTS/DESCRIPTION | 16 GUTS-1.2/GUTS/MD5 | 73 - GUTS-1.2/GUTS/NAMESPACE | 3 GUTS-1.2/GUTS/R/GUTS.R | 412 +++--- GUTS-1.2/GUTS/build/partial.rdb |only GUTS-1.2/GUTS/build/vignette.rds |binary GUTS-1.2/GUTS/data/diazinon.rda |binary GUTS-1.2/GUTS/inst/doc/GUTS-proper.R | 34 GUTS-1.2/GUTS/inst/doc/GUTS-proper.Rmd | 10 GUTS-1.2/GUTS/inst/doc/GUTS-proper.html | 498 ++++--- GUTS-1.2/GUTS/inst/doc/ringTest.R | 88 - GUTS-1.2/GUTS/inst/doc/ringTest.Rmd | 48 GUTS-1.2/GUTS/inst/doc/ringTest.html | 660 +++++----- GUTS-1.2/GUTS/inst/extdata/vignetteGUTS-Proper-MCMCresults.Rdata |binary GUTS-1.2/GUTS/inst/extdata/vignetteGUTS-Proper-forecast.Rdata |binary GUTS-1.2/GUTS/inst/extdata/vignetteGUTS-Proper-initialValues.Rdata |binary GUTS-1.2/GUTS/inst/extdata/vignetteGUTS-ringTest-IT-MCMCresults.Rdata |binary GUTS-1.2/GUTS/inst/extdata/vignetteGUTS-ringTest-SD-MCMCresults.Rdata |binary GUTS-1.2/GUTS/inst/extdata/vignetteGUTS-ringTest-forecast.Rdata |binary GUTS-1.2/GUTS/inst/extdata/vignetteGUTS-ringTest-logLC50.Rdata |binary GUTS-1.2/GUTS/man/GUTS-package.Rd | 8 GUTS-1.2/GUTS/man/GUTS.Rd | 59 GUTS-1.2/GUTS/man/diazinon.Rd | 2 GUTS-1.2/GUTS/src/GUTS_RED.h |only GUTS-1.2/GUTS/src/GUTS_base.h |only GUTS-1.2/GUTS/src/RcppExports.cpp | 10 GUTS-1.2/GUTS/src/Rcpp_GUTS_RED_interface.cpp |only GUTS-1.2/GUTS/src/TD.h |only GUTS-1.2/GUTS/src/TD_IT.h |only GUTS-1.2/GUTS/src/TD_SD.h |only GUTS-1.2/GUTS/src/TD_base.h |only GUTS-1.2/GUTS/src/TD_proper.h |only GUTS-1.2/GUTS/src/TK_RED.h |only GUTS-1.2/GUTS/src/TK_base.h |only GUTS-1.2/GUTS/src/TK_single_concentration.h |only GUTS-1.2/GUTS/src/external_data.h |only GUTS-1.2/GUTS/src/external_data_def_and_checks.h |only GUTS-1.2/GUTS/src/helpers.h |only GUTS-1.2/GUTS/src/random_distributions.h |only GUTS-1.2/GUTS/src/samplers.cpp |only GUTS-1.2/GUTS/src/samplers.h |only GUTS-1.2/GUTS/tests |only GUTS-1.2/GUTS/vignettes/GUTS-proper.Rmd | 10 GUTS-1.2/GUTS/vignettes/ringTest.Rmd | 48 46 files changed, 1074 insertions(+), 905 deletions(-)
Title: 'grid' Pattern Grobs
Description: Provides 'grid' grobs that fill in a user-defined area with various patterns. Includes enhanced versions of the geometric and image-based patterns originally contained in the 'ggpattern' package as well as original 'pch', 'polygon_tiling', 'regular_polygon', 'rose', 'text', 'wave', and 'weave' patterns plus support for custom user-defined patterns.
Author: Mike FC [aut] (Code/docs adapted from ggpattern),
Trevor L Davis [aut, cre],
Thomas Lin Pedersen [ctb] (new_data_frame() copied from ggplot2)
Maintainer: Trevor L Davis <trevor.l.davis@gmail.com>
Diff between gridpattern versions 0.2.1 dated 2021-07-17 and 0.3.1 dated 2021-12-02
DESCRIPTION | 16 LICENSE | 6 MD5 | 132 ++-- NEWS.md | 71 ++ R/clippingPathGrob.R | 2 R/grid-pattern.R | 31 R/gridpattern-package.R | 1 R/pattern-array-ambient.R | 8 R/pattern-array-image.R | 28 R/pattern-array-magick.R | 19 R/pattern-array-placeholder.R | 17 R/pattern-array-plasma.R | 17 R/pattern-both-gradient.R | 42 - R/pattern-both-rose.R | 2 R/pattern-both-text.R | 2 R/pattern-geometry-circle.R | 3 R/pattern-geometry-crosshatch.R | 5 R/pattern-geometry-regular_polygon.R | 35 - R/pattern-geometry-stripe.R | 4 R/pattern-geometry-tiling.R | 716 +++++++++++++++++++++-- R/pattern-geometry-wave.R | 1 R/pattern_square.R | 24 R/star_scale.R | 21 R/utils-geometry.R | 33 + R/utils-magick-misc.R | 7 R/utils-misc.R |only R/utils-params.R | 2 R/utils-polygon_df.R | 27 README.md | 6 build/vignette.rds |binary inst/doc/developing-patterns.R |only inst/doc/developing-patterns.Rmd |only inst/doc/developing-patterns.html |only inst/doc/tiling.R | 194 +++++- inst/doc/tiling.Rmd | 204 +++++- inst/doc/tiling.html | 447 +++++++++----- man/clippingPathGrob.Rd | 2 man/grid.pattern.Rd | 31 man/grid.pattern_ambient.Rd | 5 man/grid.pattern_circle.Rd | 3 man/grid.pattern_crosshatch.Rd | 5 man/grid.pattern_gradient.Rd | 7 man/grid.pattern_image.Rd | 27 man/grid.pattern_magick.Rd | 16 man/grid.pattern_placeholder.Rd | 15 man/grid.pattern_plasma.Rd | 12 man/grid.pattern_polygon_tiling.Rd | 62 + man/grid.pattern_regular_polygon.Rd | 19 man/grid.pattern_rose.Rd | 2 man/grid.pattern_stripe.Rd | 4 man/grid.pattern_text.Rd | 2 man/grid.pattern_wave.Rd | 3 man/gridpattern-package.Rd | 5 tests/testthat/_snaps/tiling/12-12-4.svg |only tests/testthat/_snaps/tiling/12-3-12-3.svg |only tests/testthat/_snaps/tiling/18-18-3.svg |only tests/testthat/_snaps/tiling/2-2-2-2.svg |only tests/testthat/_snaps/tiling/2-3-12.svg |only tests/testthat/_snaps/tiling/3-3-3-12-3-3-12.svg |only tests/testthat/_snaps/tiling/3-3-3-3-alt.svg |only tests/testthat/_snaps/tiling/3-3-3-3.svg |only tests/testthat/_snaps/tiling/3-3-8-3-4-3-8.svg |only tests/testthat/_snaps/tiling/3-3-8-4-8.svg |only tests/testthat/_snaps/tiling/3-4-6-3-12.svg |only tests/testthat/_snaps/tiling/3-4-8-3-8.svg |only tests/testthat/_snaps/tiling/3-6-6.svg |only tests/testthat/_snaps/tiling/4-2-4-2.svg |only tests/testthat/_snaps/tiling/4-4-4.svg |only tests/testthat/_snaps/tiling/4-6-4-6-4-6.svg |only tests/testthat/_snaps/tiling/4-6-4-6.svg |only tests/testthat/_snaps/tiling/4-8-4-8.svg |only tests/testthat/_snaps/tiling/6-6-6-6.svg |only tests/testthat/_snaps/tiling/8-4-8-4.svg |only tests/testthat/_snaps/tiling/9-3-9-3.svg |only tests/testthat/_snaps/tiling/rhombille.svg |only tests/testthat/_snaps/tiling/tetrakis-square.svg |only tests/testthat/test_tiling.R | 46 + tests/testthat/test_utils.R | 7 tests/text_diagrams/vertical.txt | 14 vignettes/developing-patterns.Rmd |only vignettes/tiling.Rmd | 204 +++++- 81 files changed, 2026 insertions(+), 588 deletions(-)
Title: Robust Data-Driven Statistical Inference in
Regression-Discontinuity Designs
Description: Regression-discontinuity (RD) designs are quasi-experimental research designs popular in social, behavioral and natural sciences. The RD design is usually employed to study the (local) causal effect of a treatment, intervention or policy. This package provides tools for data-driven graphical and analytical statistical inference in RD designs: rdrobust() to construct local-polynomial point estimators and robust confidence intervals for average treatment effects at the cutoff in Sharp, Fuzzy and Kink RD settings, rdbwselect() to perform bandwidth selection for the different procedures implemented, and rdplot() to conduct exploratory data analysis (RD plots).
Author: Sebastian Calonico <sebastian.calonico@columbia.edu>, Matias D. Cattaneo <cattaneo@princeton.edu>, Max H. Farrell <max.farrell@chicagobooth.edu>, Rocio Titiunik <titiunik@princeton.edu>
Maintainer: Sebastian Calonico <sebastian.calonico@columbia.edu>
Diff between rdrobust versions 1.0.7 dated 2021-11-05 and 1.0.8 dated 2021-12-02
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/rdbwselect.R | 1 + R/rdrobust.R | 2 ++ man/rdrobust-package.Rd | 4 ++-- 5 files changed, 13 insertions(+), 10 deletions(-)
Title: Methods for the Indirect Estimation of Bilateral Migration
Description: Tools for estimating, measuring and working with migration data.
Author: Guy J. Abel [aut, cre] (<https://orcid.org/0000-0002-4893-5687>)
Maintainer: Guy J. Abel <g.j.abel@gmail.com>
Diff between migest versions 2.0.1 dated 2021-10-30 and 2.0.2 dated 2021-12-02
DESCRIPTION | 6 +++--- MD5 | 26 +++++++++++++------------- NAMESPACE | 3 +++ NEWS.md | 9 +++++++-- R/birth_mat.R | 20 +++++++++++++------- R/death_mat.R | 6 +++--- R/ffs_demo.R | 9 ++++++++- R/sum_bilateral.R | 7 ++++++- R/sum_region.R | 39 +++++++++++++++++++++++---------------- man/birth_mat.Rd | 4 +++- man/death_mat.Rd | 6 +++--- man/ffs_demo.Rd | 3 +++ man/sum_bilateral.Rd | 9 +++++++++ man/sum_region.Rd | 35 ++++++++++++++++++++++++----------- 14 files changed, 121 insertions(+), 61 deletions(-)
Title: Imputation Methods for Multivariate Multinomial Data
Description: Implements imputation methods using EM and Data Augmentation for
multinomial data following the work of Schafer 1997 <ISBN: 978-0-412-04061-0>.
Author: Alex Whitworth [aut, cre]
Maintainer: Alex Whitworth <whitworth.alex@gmail.com>
Diff between imputeMulti versions 0.6.4 dated 2017-02-12 and 0.8.3 dated 2021-12-02
imputeMulti-0.6.4/imputeMulti/tests/testthat/test-supDist_marg_comp.R |only imputeMulti-0.8.3/imputeMulti/DESCRIPTION | 28 imputeMulti-0.8.3/imputeMulti/MD5 | 85 +- imputeMulti-0.8.3/imputeMulti/NAMESPACE | 49 - imputeMulti-0.8.3/imputeMulti/R/RcppExports.R | 40 - imputeMulti-0.8.3/imputeMulti/R/class_imputeMulti.R | 220 +++--- imputeMulti-0.8.3/imputeMulti/R/data_dep_prior_multi.R | 173 ++--- imputeMulti-0.8.3/imputeMulti/R/imputeMulti-package.R |only imputeMulti-0.8.3/imputeMulti/R/int-count_levels.R | 213 +++--- imputeMulti-0.8.3/imputeMulti/R/int-impute_multinomial.R | 71 +- imputeMulti-0.8.3/imputeMulti/R/int-search_z_Os_y.R | 120 --- imputeMulti-0.8.3/imputeMulti/R/multinomial_data_aug.R | 286 ++++---- imputeMulti-0.8.3/imputeMulti/R/multinomial_em.R | 328 ++++----- imputeMulti-0.8.3/imputeMulti/R/multinomial_impute.R | 336 ++++------ imputeMulti-0.8.3/imputeMulti/R/multinomial_stats.R | 109 +-- imputeMulti-0.8.3/imputeMulti/build |only imputeMulti-0.8.3/imputeMulti/inst |only imputeMulti-0.8.3/imputeMulti/man/data_dep_prior_multi.Rd | 53 - imputeMulti-0.8.3/imputeMulti/man/imputeMulti-class.Rd | 125 +-- imputeMulti-0.8.3/imputeMulti/man/is.imputeMulti.Rd | 37 - imputeMulti-0.8.3/imputeMulti/man/is.mod_imputeMulti.Rd | 37 - imputeMulti-0.8.3/imputeMulti/man/merge_imputed.Rd | 39 - imputeMulti-0.8.3/imputeMulti/man/mod_imputeMulti-class.Rd | 163 ++-- imputeMulti-0.8.3/imputeMulti/man/multinomial_data_aug.Rd | 118 +-- imputeMulti-0.8.3/imputeMulti/man/multinomial_em.Rd | 121 +-- imputeMulti-0.8.3/imputeMulti/man/multinomial_impute.Rd | 106 +-- imputeMulti-0.8.3/imputeMulti/man/multinomial_stats.Rd | 61 - imputeMulti-0.8.3/imputeMulti/man/summary-imputeMulti-method.Rd | 34 - imputeMulti-0.8.3/imputeMulti/man/summary-mod_imputeMulti-method.Rd | 34 - imputeMulti-0.8.3/imputeMulti/man/supDistC.Rd |only imputeMulti-0.8.3/imputeMulti/man/tract2221.Rd | 97 +- imputeMulti-0.8.3/imputeMulti/src/RcppExports.cpp | 29 imputeMulti-0.8.3/imputeMulti/src/count_compare.cpp | 26 imputeMulti-0.8.3/imputeMulti/src/utilities_rcpp.cpp | 86 -- imputeMulti-0.8.3/imputeMulti/tests/testdata |only imputeMulti-0.8.3/imputeMulti/tests/testthat.R | 21 imputeMulti-0.8.3/imputeMulti/tests/testthat/setup-testdata.R |only imputeMulti-0.8.3/imputeMulti/tests/testthat/test-classes.R | 206 +++--- imputeMulti-0.8.3/imputeMulti/tests/testthat/test-count_levels.R | 224 ++---- imputeMulti-0.8.3/imputeMulti/tests/testthat/test-impute_observations.R | 95 +- imputeMulti-0.8.3/imputeMulti/tests/testthat/test-multinomial_da.R | 143 +--- imputeMulti-0.8.3/imputeMulti/tests/testthat/test-multinomial_em.R | 151 +--- imputeMulti-0.8.3/imputeMulti/tests/testthat/test-search_z_Os_y.R | 70 -- imputeMulti-0.8.3/imputeMulti/tests/testthat/test-supDist_xy_compare.R |only imputeMulti-0.8.3/imputeMulti/vignettes |only 45 files changed, 1955 insertions(+), 2179 deletions(-)
Title: 'Drat' R Archive Template
Description: Creation and use of R Repositories via helper functions
to insert packages into a repository, and to add repository information
to the current R session. Two primary types of repositories are support:
gh-pages at GitHub, as well as local repositories on either the same machine
or a local network. Drat is a recursive acronym: Drat R Archive Template.
Author: Dirk Eddelbuettel with contributions by Carl Boettiger, Neal Fultz,
Sebastian Gibb, Colin Gillespie, Jan Górecki, Matt Jones, Thomas Leeper,
Steven Pav, Jan Schulz, Christoph Stepper, Felix G.M. Ernst and Patrick
Schratz.
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between drat versions 0.2.1 dated 2021-07-10 and 0.2.2 dated 2021-12-02
drat-0.2.1/drat/inst/doc/CombiningDratAndTravis.Rmd |only drat-0.2.1/drat/inst/doc/DratFAQ.Rmd |only drat-0.2.1/drat/inst/doc/DratForPackageAuthors.R |only drat-0.2.1/drat/inst/doc/DratForPackageAuthors.Rmd |only drat-0.2.1/drat/inst/doc/DratForPackageUsers.R |only drat-0.2.1/drat/inst/doc/DratForPackageUsers.Rmd |only drat-0.2.1/drat/inst/doc/DratStepByStep.Rmd |only drat-0.2.1/drat/inst/doc/WhyDrat.R |only drat-0.2.1/drat/inst/doc/WhyDrat.Rmd |only drat-0.2.1/drat/vignettes/CombiningDratAndTravis.Rmd |only drat-0.2.1/drat/vignettes/DratFAQ.Rmd |only drat-0.2.1/drat/vignettes/DratForPackageAuthors.Rmd |only drat-0.2.1/drat/vignettes/DratForPackageUsers.Rmd |only drat-0.2.1/drat/vignettes/DratStepByStep.Rmd |only drat-0.2.1/drat/vignettes/WhyDrat.Rmd |only drat-0.2.2/drat/ChangeLog | 21 + drat-0.2.2/drat/DESCRIPTION | 12 drat-0.2.2/drat/MD5 | 50 +- drat-0.2.2/drat/README.md | 1 drat-0.2.2/drat/build/vignette.rds |binary drat-0.2.2/drat/inst/NEWS.Rd | 7 drat-0.2.2/drat/inst/doc/CombiningDratAndTravis.html | 271 +++++++++++----- drat-0.2.2/drat/inst/doc/CombiningDratAndTravis.md |only drat-0.2.2/drat/inst/doc/DratFAQ.html | 321 ++++++++++--------- drat-0.2.2/drat/inst/doc/DratFAQ.md |only drat-0.2.2/drat/inst/doc/DratForPackageAuthors.html | 308 +++++++++--------- drat-0.2.2/drat/inst/doc/DratForPackageAuthors.md |only drat-0.2.2/drat/inst/doc/DratForPackageUsers.html | 276 +++++++++------- drat-0.2.2/drat/inst/doc/DratForPackageUsers.md |only drat-0.2.2/drat/inst/doc/DratStepByStep.html | 262 ++++++++++----- drat-0.2.2/drat/inst/doc/DratStepByStep.md |only drat-0.2.2/drat/inst/doc/WhyDrat.html | 267 +++++++++------ drat-0.2.2/drat/inst/doc/WhyDrat.md |only drat-0.2.2/drat/vignettes/CombiningDratAndTravis.md |only drat-0.2.2/drat/vignettes/DratFAQ.md |only drat-0.2.2/drat/vignettes/DratForPackageAuthors.md |only drat-0.2.2/drat/vignettes/DratForPackageUsers.md |only drat-0.2.2/drat/vignettes/DratStepByStep.md |only drat-0.2.2/drat/vignettes/WhyDrat.md |only drat-0.2.2/drat/vignettes/water.css |only 40 files changed, 1072 insertions(+), 724 deletions(-)