Thu, 02 Dec 2021

Package VennDiagram updated to version 1.7.1 with previous version 1.7.0 dated 2021-10-30

Title: Generate High-Resolution Venn and Euler Plots
Description: A set of functions to generate high-resolution Venn and Euler plots. Includes handling for several special cases, including two-case scaling, and extensive customization of plot shape and structure.
Author: Hanbo Chen
Maintainer: Paul Boutros <pboutros@mednet.ucla.edu>

Diff between VennDiagram versions 1.7.0 dated 2021-10-30 and 1.7.1 dated 2021-12-02

 DESCRIPTION                        |   10 +++++-----
 MD5                                |   28 ++++++++++++++--------------
 NEWS                               |    5 +++++
 tests/testthat/Rplots.pdf          |binary
 tests/testthat/data/plotsFive.rda  |binary
 tests/testthat/data/plotsFour.rda  |binary
 tests/testthat/data/plotsOne.rda   |binary
 tests/testthat/data/plotsThree.rda |binary
 tests/testthat/data/plotsTwo.rda   |binary
 tests/testthat/test-Five.R         |   13 ++-----------
 tests/testthat/test-Four.R         |   13 ++-----------
 tests/testthat/test-One.R          |   13 ++-----------
 tests/testthat/test-Three.R        |   12 ++----------
 tests/testthat/test-Two.R          |   13 ++-----------
 tests/testthat/testFunction.R      |   22 ++++++++++++++++++++++
 15 files changed, 56 insertions(+), 73 deletions(-)

More information about VennDiagram at CRAN
Permanent link

Package ARCokrig updated to version 0.1.2 with previous version 0.1.1 dated 2020-07-08

Title: Autoregressive Cokriging Models for Multifidelity Codes
Description: For emulating multifidelity computer models. The major methods include univariate autoregressive cokriging and multivariate autoregressive cokriging. The autoregressive cokriging methods are implemented for both hierarchically nested design and non-nested design. For hierarchically nested design, the model parameters are estimated via standard optimization algorithms; For non-nested design, the model parameters are estimated via Monte Carlo expectation-maximization (MCEM) algorithms. In both cases, the priors are chosen such that the posterior distributions are proper. Notice that the uniform priors on range parameters in the correlation function lead to improper posteriors. This should be avoided when Bayesian analysis is adopted. The development of objective priors for autoregressive cokriging models can be found in Pulong Ma (2020) <DOI:10.1137/19M1289893>. The development of the multivariate autoregressive cokriging models with possibly non-nested design can be found in Pulong Ma, Georgios Karagiannis, Bledar A Konomi, Taylor G Asher, Gabriel R Toro, and Andrew T Cox (2019) <arXiv:1909.01836>.
Author: Pulong Ma [aut, cre]
Maintainer: Pulong Ma <mpulong@gmail.com>

Diff between ARCokrig versions 0.1.1 dated 2020-07-08 and 0.1.2 dated 2021-12-02

 ARCokrig-0.1.1/ARCokrig/tests        |only
 ARCokrig-0.1.2/ARCokrig/DESCRIPTION  |   16 ++++++++--------
 ARCokrig-0.1.2/ARCokrig/MD5          |   10 +++++-----
 ARCokrig-0.1.2/ARCokrig/NAMESPACE    |    1 +
 ARCokrig-0.1.2/ARCokrig/R/startup.R  |only
 ARCokrig-0.1.2/ARCokrig/R/utils.R    |    2 +-
 ARCokrig-0.1.2/ARCokrig/inst/NEWS.Rd |only
 7 files changed, 15 insertions(+), 14 deletions(-)

More information about ARCokrig at CRAN
Permanent link

Package tidyquery updated to version 0.2.3 with previous version 0.2.2 dated 2021-02-06

Title: Query 'R' Data Frames with 'SQL'
Description: Use 'SQL' 'SELECT' statements to query 'R' data frames.
Author: Ian Cook [aut, cre], Cloudera [cph]
Maintainer: Ian Cook <ianmcook@gmail.com>

Diff between tidyquery versions 0.2.2 dated 2021-02-06 and 0.2.3 dated 2021-12-02

 DESCRIPTION                           |   32 +++++++------
 MD5                                   |   50 ++++++++++-----------
 NAMESPACE                             |    1 
 NEWS.md                               |    6 ++
 R/compat.R                            |    8 ++-
 R/join.R                              |   78 +++++++++++++++++++++++-----------
 R/query.R                             |   60 ++++++++++++++++----------
 R/quote.R                             |    4 -
 R/remove.R                            |   18 +++----
 R/replace.R                           |    2 
 R/show_dplyr.R                        |    5 +-
 R/unscope.R                           |    2 
 README.md                             |   14 +++---
 man/show_dplyr.Rd                     |    3 -
 tests/testthat/setup-load_data.R      |    1 
 tests/testthat/test-dtplyr.R          |    2 
 tests/testthat/test-environments.R    |   42 +++++++++++++-----
 tests/testthat/test-errors.R          |    6 ++
 tests/testthat/test-examples.R        |   12 +++--
 tests/testthat/test-in_and_between.R  |    2 
 tests/testthat/test-joins.R           |   12 ++---
 tests/testthat/test-order_by.R        |    4 -
 tests/testthat/test-select_distinct.R |    4 -
 tests/testthat/test-select_simple.R   |   12 +++--
 tests/testthat/test-select_where.R    |    2 
 tests/testthat/test-show_dplyr.R      |   30 +++----------
 26 files changed, 245 insertions(+), 167 deletions(-)

More information about tidyquery at CRAN
Permanent link

Package RawHummus updated to version 0.2.1 with previous version 0.2.0 dated 2021-10-11

Title: Raw Data Quality Control Tool for LC-MS System
Description: Assess LC–MS system performance by visualizing instrument log files and monitoring raw quality control samples within a project.
Author: Yonghui Dong
Maintainer: Yonghui Dong <yonghui.dong@gmail.com>

Diff between RawHummus versions 0.2.0 dated 2021-10-11 and 0.2.1 dated 2021-12-02

 DESCRIPTION                      |   10 
 MD5                              |   18 
 NAMESPACE                        |    1 
 R/runGui.R                       |   40 -
 README.md                        |   29 
 inst/shiny/Gui/Report.Rmd        | 1185 +++++++++++++++++++--------------------
 inst/shiny/Gui/mds/contact.md    |   42 -
 inst/shiny/Gui/mds/landing.md    |    2 
 inst/shiny/Gui/ui-tab-convert.R  |    2 
 inst/shiny/Gui/ui-tab-evaluate.R |  203 +++---
 10 files changed, 782 insertions(+), 750 deletions(-)

More information about RawHummus at CRAN
Permanent link

Package mfp updated to version 1.5.2.1 with previous version 1.5.2 dated 2015-09-09

Title: Multivariable Fractional Polynomials
Description: Fractional polynomials are used to represent curvature in regression models. A key reference is Royston and Altman, 1994.
Author: original by Gareth Ambler <gareth@stats.ucl.ac.uk>, modified by Axel Benner <benner@dkfz.de>
Maintainer: ORPHANED

Diff between mfp versions 1.5.2 dated 2015-09-09 and 1.5.2.1 dated 2021-12-02

 DESCRIPTION      |   13 +++++++++----
 MD5              |    4 ++--
 data/bodyfat.rda |binary
 3 files changed, 11 insertions(+), 6 deletions(-)

More information about mfp at CRAN
Permanent link

Package udpipe updated to version 0.8.8 with previous version 0.8.6 dated 2021-06-01

Title: Tokenization, Parts of Speech Tagging, Lemmatization and Dependency Parsing with the 'UDPipe' 'NLP' Toolkit
Description: This natural language processing toolkit provides language-agnostic 'tokenization', 'parts of speech tagging', 'lemmatization' and 'dependency parsing' of raw text. Next to text parsing, the package also allows you to train annotation models based on data of 'treebanks' in 'CoNLL-U' format as provided at <https://universaldependencies.org/format.html>. The techniques are explained in detail in the paper: 'Tokenizing, POS Tagging, Lemmatizing and Parsing UD 2.0 with UDPipe', available at <doi:10.18653/v1/K17-3009>. The toolkit also contains functionalities for commonly used data manipulations on texts which are enriched with the output of the parser. Namely functionalities and algorithms for collocations, token co-occurrence, document term matrix handling, term frequency inverse document frequency calculations, information retrieval metrics (Okapi BM25), handling of multi-word expressions, keyword detection (Rapid Automatic Keyword Extraction, noun phrase extraction, syntactical patterns) sentiment scoring and semantic similarity analysis.
Author: Jan Wijffels [aut, cre, cph], BNOSAC [cph], Institute of Formal and Applied Linguistics, Faculty of Mathematics and Physics, Charles University in Prague, Czech Republic [cph], Milan Straka [ctb, cph], Jana Straková [ctb, cph]
Maintainer: Jan Wijffels <jwijffels@bnosac.be>

Diff between udpipe versions 0.8.6 dated 2021-06-01 and 0.8.8 dated 2021-12-02

 DESCRIPTION                                           |    6 
 MD5                                                   |  237 -
 NAMESPACE                                             |  241 -
 NEWS.md                                               |  411 +-
 R/RcppExports.R                                       |   70 
 R/datasets.R                                          |  242 -
 R/nlp_collocation.R                                   |  224 -
 R/nlp_cooccurrence.R                                  |  466 +-
 R/nlp_dependency_parsing.R                            |  304 -
 R/nlp_dependency_utlities.R                           |  862 ++---
 R/nlp_flow.R                                          | 2903 +++++++++---------
 R/nlp_morphological.R                                 |  254 -
 R/nlp_phrase_sequences.R                              |  360 +-
 R/nlp_rake.R                                          |  186 -
 R/pkg.R                                               |   20 
 R/sentiment.R                                         |  382 +-
 R/topicmodels.R                                       |  288 -
 R/udpipe_models.R                                     |  996 +++---
 R/udpipe_parse.R                                      | 1034 +++---
 R/udpipe_reconstruct.R                                |  352 +-
 R/udpipe_train.R                                      |  738 ++--
 R/utils.R                                             | 1773 +++++-----
 README.md                                             |  200 -
 build/vignette.rds                                    |binary
 data/brussels_reviews_w2v_embeddings_lemma_nl.RData   |only
 inst/doc/udpipe-annotation.R                          |  158 
 inst/doc/udpipe-annotation.Rmd                        |  366 +-
 inst/doc/udpipe-annotation.html                       |  869 +++--
 inst/doc/udpipe-parallel.R                            |   84 
 inst/doc/udpipe-parallel.Rmd                          |  224 -
 inst/doc/udpipe-parallel.html                         |  644 ++-
 inst/doc/udpipe-train.R                               |  318 -
 inst/doc/udpipe-train.Rmd                             | 1108 +++---
 inst/doc/udpipe-train.html                            | 2014 ++++++------
 inst/doc/udpipe-tryitout.R                            |   62 
 inst/doc/udpipe-tryitout.Rmd                          |  144 
 inst/doc/udpipe-tryitout.html                         |  739 ++--
 inst/doc/udpipe-universe.R                            |    8 
 inst/doc/udpipe-universe.Rmd                          |   82 
 inst/doc/udpipe-universe.html                         |  377 +-
 inst/doc/udpipe-usecase-postagging-lemmatisation.R    |  236 -
 inst/doc/udpipe-usecase-postagging-lemmatisation.Rmd  |  446 +-
 inst/doc/udpipe-usecase-postagging-lemmatisation.html |  930 +++--
 inst/doc/udpipe-usecase-topicmodelling.R              |  292 -
 inst/doc/udpipe-usecase-topicmodelling.Rmd            |  530 +--
 inst/doc/udpipe-usecase-topicmodelling.html           | 1089 +++---
 inst/dummydata/traindata.conllu                       |   80 
 inst/models-ud-2.0/params_parser                      |  136 
 inst/models-ud-2.0/params_tagger                      |  136 
 inst/models-ud-2.0/params_tokenizer                   |  136 
 man/as.data.frame.udpipe_connlu.Rd                    |   92 
 man/as.matrix.cooccurrence.Rd                         |   64 
 man/as_conllu.Rd                                      |  112 
 man/as_cooccurrence.Rd                                |   60 
 man/as_fasttext.Rd                                    |   56 
 man/as_phrasemachine.Rd                               |  100 
 man/as_word2vec.Rd                                    |   64 
 man/brussels_listings.Rd                              |   44 
 man/brussels_reviews.Rd                               |   52 
 man/brussels_reviews_anno.Rd                          |  120 
 man/brussels_reviews_w2v_embeddings_lemma_nl.Rd       |only
 man/cbind_dependencies.Rd                             |  136 
 man/cbind_morphological.Rd                            |  118 
 man/cooccurrence.Rd                                   |  242 -
 man/document_term_frequencies.Rd                      |  188 -
 man/document_term_frequencies_statistics.Rd           |   68 
 man/document_term_matrix.Rd                           |  326 +-
 man/dtm_bind.Rd                                       |  148 
 man/dtm_chisq.Rd                                      |  118 
 man/dtm_colsums.Rd                                    |  132 
 man/dtm_conform.Rd                                    |  178 -
 man/dtm_cor.Rd                                        |   60 
 man/dtm_remove_lowfreq.Rd                             |   80 
 man/dtm_remove_sparseterms.Rd                         |   74 
 man/dtm_remove_terms.Rd                               |   70 
 man/dtm_remove_tfidf.Rd                               |  104 
 man/dtm_reverse.Rd                                    |   60 
 man/dtm_svd_similarity.Rd                             |  202 -
 man/dtm_tfidf.Rd                                      |   62 
 man/keywords_collocation.Rd                           |  158 
 man/keywords_phrases.Rd                               |  220 -
 man/keywords_rake.Rd                                  |  152 
 man/paste.data.frame.Rd                               |   90 
 man/predict.LDA.Rd                                    |  218 -
 man/strsplit.data.frame.Rd                            |  102 
 man/syntaxpatterns.Rd                                 |   22 
 man/syntaxrelation.Rd                                 |   58 
 man/txt_collapse.Rd                                   |   58 
 man/txt_contains.Rd                                   |   88 
 man/txt_count.Rd                                      |   58 
 man/txt_freq.Rd                                       |   56 
 man/txt_grepl.Rd                                      |only
 man/txt_highlight.Rd                                  |   56 
 man/txt_next.Rd                                       |   62 
 man/txt_nextgram.Rd                                   |   90 
 man/txt_overlap.Rd                                    |   50 
 man/txt_previous.Rd                                   |   62 
 man/txt_previousgram.Rd                               |   90 
 man/txt_recode.Rd                                     |   88 
 man/txt_recode_ngram.Rd                               |  100 
 man/txt_sample.Rd                                     |   54 
 man/txt_sentiment.Rd                                  |  234 -
 man/txt_show.Rd                                       |   46 
 man/txt_tagsequence.Rd                                |  134 
 man/udpipe.Rd                                         |  212 -
 man/udpipe_accuracy.Rd                                |  132 
 man/udpipe_annotate.Rd                                |  228 -
 man/udpipe_annotation_params.Rd                       |   64 
 man/udpipe_download_model.Rd                          |  380 +-
 man/udpipe_load_model.Rd                              |  104 
 man/udpipe_read_conllu.Rd                             |   46 
 man/udpipe_train.Rd                                   |  258 -
 man/unique_identifier.Rd                              |   70 
 man/unlist_tokens.Rd                                  |   50 
 vignettes/udpipe-annotation.Rmd                       |  366 +-
 vignettes/udpipe-parallel.Rmd                         |  224 -
 vignettes/udpipe-train.Rmd                            | 1108 +++---
 vignettes/udpipe-tryitout.Rmd                         |  144 
 vignettes/udpipe-universe.Rmd                         |   82 
 vignettes/udpipe-usecase-postagging-lemmatisation.Rmd |  446 +-
 vignettes/udpipe-usecase-topicmodelling.Rmd           |  530 +--
 121 files changed, 17577 insertions(+), 16100 deletions(-)

More information about udpipe at CRAN
Permanent link

Package qqconf updated to version 1.1.0 with previous version 1.0.0 dated 2021-08-17

Title: Creates Simultaneous Testing Bands for QQ-Plots
Description: Provides functionality for creating Quantile-Quantile (QQ) and Probability-Probability (PP) plots with simultaneous testing bands to asses significance of sample deviation from a reference distribution.
Author: Eric Weine [aut, cre], Mary Sara McPeek [aut], Abney Mark [aut]
Maintainer: Eric Weine <ericweine15@gmail.com>

Diff between qqconf versions 1.0.0 dated 2021-08-17 and 1.1.0 dated 2021-12-02

 DESCRIPTION                            |   11 ++--
 MD5                                    |   16 ++++--
 R/one_sided.R                          |   80 ++++++++++++---------------------
 build                                  |only
 inst                                   |only
 man/get_level_from_bounds_one_sided.Rd |   15 +++++-
 src/jointlevel_one_sided.c             |only
 src/jointlevel_two_sided.c             |    1 
 src/qqconf_init.c                      |    2 
 vignettes                              |only
 10 files changed, 64 insertions(+), 61 deletions(-)

More information about qqconf at CRAN
Permanent link

Package DescrTab2 updated to version 2.1.7 with previous version 2.0.7 dated 2021-03-15

Title: Publication Quality Descriptive Statistics Tables
Description: Provides functions to create descriptive statistics tables for continuous and categorical variables. By default, summary statistics such as mean, standard deviation, quantiles, minimum and maximum for continuous variables and relative and absolute frequencies for categorical variables are calculated. 'DescrTab2' features a sophisticated algorithm to choose appropriate test statistics for your data and provides p-values. On top of this, confidence intervals for group differences of appropriated summary measures are automatically produces for two-group comparison. Tables generated by 'DescrTab2' can be integrated in a variety of document formats, including .html, .tex and .docx documents. 'DescrTab2' also allows printing tables to console and saving table objects for later use.
Author: Jan Meis [aut, cre] (<https://orcid.org/0000-0001-5407-7220>), Lukas Baumann [aut] (<https://orcid.org/0000-0001-7931-7470>), Maximilian Pilz [aut] (<https://orcid.org/0000-0002-9685-1613>), Lukas Sauer [aut] (<https://orcid.org/0000-0002-1340-9994>), Lorenz Uhlmann [ctb], Csilla van Lunteren [ctb], Kevin Kunzmann [ctb], Hao Zhu [ctb] (<https://orcid.org/0000-0002-3386-6076>)
Maintainer: Jan Meis <meis@imbi.uni-heidelberg.de>

Diff between DescrTab2 versions 2.0.7 dated 2021-03-15 and 2.1.7 dated 2021-12-02

 DescrTab2-2.0.7/DescrTab2/inst/doc/maintenance_guide.R                          |only
 DescrTab2-2.0.7/DescrTab2/inst/doc/maintenance_guide.Rmd                        |only
 DescrTab2-2.0.7/DescrTab2/inst/doc/maintenance_guide.html                       |only
 DescrTab2-2.0.7/DescrTab2/inst/doc/test_choice_tree_pdf.R                       |only
 DescrTab2-2.0.7/DescrTab2/inst/doc/test_choice_tree_pdf.Rmd                     |only
 DescrTab2-2.0.7/DescrTab2/inst/doc/test_choice_tree_pdf.pdf                     |only
 DescrTab2-2.0.7/DescrTab2/inst/doc/usage_guide.R                                |only
 DescrTab2-2.0.7/DescrTab2/inst/doc/usage_guide.Rmd                              |only
 DescrTab2-2.0.7/DescrTab2/inst/doc/usage_guide.html                             |only
 DescrTab2-2.0.7/DescrTab2/inst/doc/validation_report.R                          |only
 DescrTab2-2.0.7/DescrTab2/inst/doc/validation_report.Rmd                        |only
 DescrTab2-2.0.7/DescrTab2/inst/doc/validation_report.html                       |only
 DescrTab2-2.0.7/DescrTab2/man/test_cat.Rd                                       |only
 DescrTab2-2.0.7/DescrTab2/man/test_cont.Rd                                      |only
 DescrTab2-2.0.7/DescrTab2/tests/testthat/test_console.R                         |only
 DescrTab2-2.0.7/DescrTab2/vignettes/maintenance_guide.Rmd                       |only
 DescrTab2-2.0.7/DescrTab2/vignettes/pdfs                                        |only
 DescrTab2-2.0.7/DescrTab2/vignettes/test_choice_tree_pdf.Rmd                    |only
 DescrTab2-2.0.7/DescrTab2/vignettes/usage_guide.Rmd                             |only
 DescrTab2-2.0.7/DescrTab2/vignettes/validation_report.Rmd                       |only
 DescrTab2-2.0.7/DescrTab2/vignettes/validation_report/wilcox.test_1_sample      |only
 DescrTab2-2.0.7/DescrTab2/vignettes/validation_report/wilcox.test_2_sample      |only
 DescrTab2-2.1.7/DescrTab2/DESCRIPTION                                           |   25 
 DescrTab2-2.1.7/DescrTab2/MD5                                                   |  223 
 DescrTab2-2.1.7/DescrTab2/NAMESPACE                                             |   29 
 DescrTab2-2.1.7/DescrTab2/NEWS.md                                               |   70 
 DescrTab2-2.1.7/DescrTab2/R/DescrTab2.R                                         |   34 
 DescrTab2-2.1.7/DescrTab2/R/descr.R                                             | 3349 +++++-----
 DescrTab2-2.1.7/DescrTab2/R/latex.R                                             |only
 DescrTab2-2.1.7/DescrTab2/R/loadData.R                                          |only
 DescrTab2-2.1.7/DescrTab2/R/misc.R                                              |only
 DescrTab2-2.1.7/DescrTab2/R/prettyDigits.R                                      |only
 DescrTab2-2.1.7/DescrTab2/R/summaryStats.R                                      |only
 DescrTab2-2.1.7/DescrTab2/README.md                                             |   28 
 DescrTab2-2.1.7/DescrTab2/build/vignette.rds                                    |binary
 DescrTab2-2.1.7/DescrTab2/inst/doc/a_usage_guide.R                              |only
 DescrTab2-2.1.7/DescrTab2/inst/doc/a_usage_guide.Rmd                            |only
 DescrTab2-2.1.7/DescrTab2/inst/doc/a_usage_guide.html                           |only
 DescrTab2-2.1.7/DescrTab2/inst/doc/b_test_choice_tree_pdf.R                     |only
 DescrTab2-2.1.7/DescrTab2/inst/doc/b_test_choice_tree_pdf.Rmd                   |only
 DescrTab2-2.1.7/DescrTab2/inst/doc/b_test_choice_tree_pdf.pdf                   |only
 DescrTab2-2.1.7/DescrTab2/inst/doc/c_other_software_comparison.R                |only
 DescrTab2-2.1.7/DescrTab2/inst/doc/c_other_software_comparison.Rmd              |only
 DescrTab2-2.1.7/DescrTab2/inst/doc/c_other_software_comparison.html             |only
 DescrTab2-2.1.7/DescrTab2/inst/doc/d_validation_statement.R                     |only
 DescrTab2-2.1.7/DescrTab2/inst/doc/d_validation_statement.Rmd                   |only
 DescrTab2-2.1.7/DescrTab2/inst/doc/d_validation_statement.html                  |only
 DescrTab2-2.1.7/DescrTab2/inst/doc/e_maintenance_guide.R                        |only
 DescrTab2-2.1.7/DescrTab2/inst/doc/e_maintenance_guide.Rmd                      |only
 DescrTab2-2.1.7/DescrTab2/inst/doc/e_maintenance_guide.html                     |only
 DescrTab2-2.1.7/DescrTab2/inst/examples                                         |only
 DescrTab2-2.1.7/DescrTab2/man/DescrTab2.Rd                                      |    2 
 DescrTab2-2.1.7/DescrTab2/man/codegen_load_all_sas_data.Rd                      |only
 DescrTab2-2.1.7/DescrTab2/man/create_character_subtable.Rd                      |only
 DescrTab2-2.1.7/DescrTab2/man/create_numeric_subtable.Rd                        |only
 DescrTab2-2.1.7/DescrTab2/man/descr.Rd                                          |   96 
 DescrTab2-2.1.7/DescrTab2/man/dot-onLoad.Rd                                     |only
 DescrTab2-2.1.7/DescrTab2/man/escape_latex_symbols.Rd                           |only
 DescrTab2-2.1.7/DescrTab2/man/extract_labels.Rd                                 |only
 DescrTab2-2.1.7/DescrTab2/man/farrington.manning.Rd                             |  178 
 DescrTab2-2.1.7/DescrTab2/man/format_freqs.Rd                                   |   21 
 DescrTab2-2.1.7/DescrTab2/man/guess_ID_variable.Rd                              |only
 DescrTab2-2.1.7/DescrTab2/man/ignore_unused_args.Rd                             |   57 
 DescrTab2-2.1.7/DescrTab2/man/in_minipage.Rd                                    |only
 DescrTab2-2.1.7/DescrTab2/man/knit_print.DescrList.Rd                           |only
 DescrTab2-2.1.7/DescrTab2/man/knit_print.DescrPrint.Rd                          |only
 DescrTab2-2.1.7/DescrTab2/man/lapply_descr.Rd                                   |only
 DescrTab2-2.1.7/DescrTab2/man/list_freetext_markdown.Rd                         |only
 DescrTab2-2.1.7/DescrTab2/man/n_int_digits.Rd                                   |only
 DescrTab2-2.1.7/DescrTab2/man/parse_formats.Rd                                  |only
 DescrTab2-2.1.7/DescrTab2/man/print.DescrList.Rd                                |   15 
 DescrTab2-2.1.7/DescrTab2/man/print.DescrPrint.Rd                               |    1 
 DescrTab2-2.1.7/DescrTab2/man/read_redcap_formatted.Rd                          |only
 DescrTab2-2.1.7/DescrTab2/man/read_sas_formatted.Rd                             |only
 DescrTab2-2.1.7/DescrTab2/man/sig_test.Rd                                       |only
 DescrTab2-2.1.7/DescrTab2/man/sigfig.Rd                                         |only
 DescrTab2-2.1.7/DescrTab2/man/sigfig_gen.Rd                                     |only
 DescrTab2-2.1.7/DescrTab2/man/split_redcap_dataset.Rd                           |only
 DescrTab2-2.1.7/DescrTab2/man/unlabel.Rd                                        |only
 DescrTab2-2.1.7/DescrTab2/man/write_in_tmpfile_for_cran.Rd                      |    2 
 DescrTab2-2.1.7/DescrTab2/tests/console/1_sample_t.test.txt                     |    2 
 DescrTab2-2.1.7/DescrTab2/tests/console/1_samplepaired_t.test.txt               |   17 
 DescrTab2-2.1.7/DescrTab2/tests/console/2_sample_t.test.txt                     |   14 
 DescrTab2-2.1.7/DescrTab2/tests/console/CochraneQTest.txt                       |   11 
 DescrTab2-2.1.7/DescrTab2/tests/console/boschloo.txt                            |    6 
 DescrTab2-2.1.7/DescrTab2/tests/console/exact_mcnemar.test.txt                  |   18 
 DescrTab2-2.1.7/DescrTab2/tests/console/f.test.txt                              |   14 
 DescrTab2-2.1.7/DescrTab2/tests/console/friedman.test.txt                       |   17 
 DescrTab2-2.1.7/DescrTab2/tests/console/kruskal.test.txt                        |   14 
 DescrTab2-2.1.7/DescrTab2/tests/console/mcnemar.test.txt                        |   22 
 DescrTab2-2.1.7/DescrTab2/tests/console/mixed_model.txt                         |   19 
 DescrTab2-2.1.7/DescrTab2/tests/console/more_sample_chisq.test.txt              |    8 
 DescrTab2-2.1.7/DescrTab2/tests/console/print_console_single.txt                |    8 
 DescrTab2-2.1.7/DescrTab2/tests/console/print_numeric_CI.txt                    |   93 
 DescrTab2-2.1.7/DescrTab2/tests/console/print_numeric_single.txt                |   10 
 DescrTab2-2.1.7/DescrTab2/tests/console/wilcox.test_1_sample.txt                |   16 
 DescrTab2-2.1.7/DescrTab2/tests/console/wilcox.test_2_sample.txt                |   14 
 DescrTab2-2.1.7/DescrTab2/tests/rmds/html_doc.Rmd                               |   26 
 DescrTab2-2.1.7/DescrTab2/tests/rmds/html_doc.html                              | 1565 +++-
 DescrTab2-2.1.7/DescrTab2/tests/rmds/tex_doc.Rmd                                |   22 
 DescrTab2-2.1.7/DescrTab2/tests/rmds/tex_doc.aux                                |only
 DescrTab2-2.1.7/DescrTab2/tests/rmds/tex_doc.pdf                                |binary
 DescrTab2-2.1.7/DescrTab2/tests/rmds/tex_doc.tex                                |  250 
 DescrTab2-2.1.7/DescrTab2/tests/rmds/tex_doc.toc                                |only
 DescrTab2-2.1.7/DescrTab2/tests/rmds/word_doc.Rmd                               |   28 
 DescrTab2-2.1.7/DescrTab2/tests/rmds/word_doc.docx                              |binary
 DescrTab2-2.1.7/DescrTab2/tests/testthat/test_CI.R                              |only
 DescrTab2-2.1.7/DescrTab2/tests/testthat/test_console_output.R                  |only
 DescrTab2-2.1.7/DescrTab2/tests/testthat/test_edge_cases.R                      |   47 
 DescrTab2-2.1.7/DescrTab2/tests/testthat/test_erros.R                           |   46 
 DescrTab2-2.1.7/DescrTab2/tests/testthat/test_farrington.manning.R              |    3 
 DescrTab2-2.1.7/DescrTab2/tests/testthat/test_html.R                            |   11 
 DescrTab2-2.1.7/DescrTab2/tests/testthat/test_loadData.R                        |only
 DescrTab2-2.1.7/DescrTab2/tests/testthat/test_misc.R                            |   71 
 DescrTab2-2.1.7/DescrTab2/tests/testthat/test_missings.R                        |    2 
 DescrTab2-2.1.7/DescrTab2/tests/testthat/test_numeric.R                         |   23 
 DescrTab2-2.1.7/DescrTab2/tests/testthat/test_numeric_factors.R                 |   11 
 DescrTab2-2.1.7/DescrTab2/tests/testthat/test_options.R                         |  646 +
 DescrTab2-2.1.7/DescrTab2/tests/testthat/test_summary_stats.R                   |only
 DescrTab2-2.1.7/DescrTab2/tests/testthat/test_tests.R                           |  561 +
 DescrTab2-2.1.7/DescrTab2/tests/testthat/test_tex.R                             |    3 
 DescrTab2-2.1.7/DescrTab2/tests/testthat/test_word.R                            |   29 
 DescrTab2-2.1.7/DescrTab2/vignettes/a_usage_guide.Rmd                           |only
 DescrTab2-2.1.7/DescrTab2/vignettes/b_test_choice_tree_pdf.Rmd                  |only
 DescrTab2-2.1.7/DescrTab2/vignettes/c_other_software_comparison.Rmd             |only
 DescrTab2-2.1.7/DescrTab2/vignettes/d_validation_statement.Rmd                  |only
 DescrTab2-2.1.7/DescrTab2/vignettes/e_maintenance_guide.Rmd                     |only
 DescrTab2-2.1.7/DescrTab2/vignettes/test_choice_tree.pdf                        |binary
 DescrTab2-2.1.7/DescrTab2/vignettes/test_choice_tree.tex                        |   41 
 DescrTab2-2.1.7/DescrTab2/vignettes/tex/test_choice_tree.aux                    |only
 DescrTab2-2.1.7/DescrTab2/vignettes/tex/test_choice_tree.fdb_latexmk            |only
 DescrTab2-2.1.7/DescrTab2/vignettes/tex/test_choice_tree.fls                    |only
 DescrTab2-2.1.7/DescrTab2/vignettes/tex/test_choice_tree.log                    |only
 DescrTab2-2.1.7/DescrTab2/vignettes/tex/test_choice_tree.pdf                    |only
 DescrTab2-2.1.7/DescrTab2/vignettes/tex/test_choice_tree.synctex.gz             |only
 DescrTab2-2.1.7/DescrTab2/vignettes/tex/test_choice_tree.tex                    |   40 
 DescrTab2-2.1.7/DescrTab2/vignettes/usage_guide.html                            |only
 DescrTab2-2.1.7/DescrTab2/vignettes/validation_report/aov/aov_dat_1.csv         |   81 
 DescrTab2-2.1.7/DescrTab2/vignettes/validation_report/aov/aov_example_1.html    |   76 
 DescrTab2-2.1.7/DescrTab2/vignettes/validation_report/aov/aov_sas_example_1.sas |   10 
 DescrTab2-2.1.7/DescrTab2/vignettes/validation_report/gen_sasdata_aov.R         |    6 
 DescrTab2-2.1.7/DescrTab2/vignettes/validation_report/wilcox_1_sample           |only
 DescrTab2-2.1.7/DescrTab2/vignettes/validation_report/wilcox_2_sample           |only
 143 files changed, 4706 insertions(+), 3325 deletions(-)

More information about DescrTab2 at CRAN
Permanent link

Package preferably updated to version 0.4 with previous version 0.3.1 dated 2021-05-02

Title: A 'pkgdown' Template
Description: This is an accessible template for 'pkgdown'. It uses two bootstrap themes, Flatly and Darkly and utilizes the 'prefers-color-scheme' CSS variable to automatically serve either of the two based on user’s operating system setting, or allowing them to manually toggle between them.
Author: Amir Masoud Abdol [aut, cre]
Maintainer: Amir Masoud Abdol <i@amirmasoudabdol.name>

Diff between preferably versions 0.3.1 dated 2021-05-02 and 0.4 dated 2021-12-02

 preferably-0.3.1/preferably/inst/pkgdown/assets     |only
 preferably-0.3.1/preferably/inst/pkgdown/templates  |only
 preferably-0.4/preferably/DESCRIPTION               |    8 ++--
 preferably-0.4/preferably/MD5                       |   36 +++++++++++---------
 preferably-0.4/preferably/NEWS.md                   |   17 +++++++++
 preferably-0.4/preferably/README.md                 |   18 +++++++---
 preferably-0.4/preferably/build/vignette.rds        |binary
 preferably-0.4/preferably/inst/doc/in-the-wild.Rmd  |    6 +++
 preferably-0.4/preferably/inst/doc/in-the-wild.html |    6 +++
 preferably-0.4/preferably/inst/pkgdown/BS3          |only
 preferably-0.4/preferably/inst/pkgdown/BS5          |only
 preferably-0.4/preferably/vignettes/in-the-wild.Rmd |    6 +++
 12 files changed, 74 insertions(+), 23 deletions(-)

More information about preferably at CRAN
Permanent link

Package clock updated to version 0.6.0 with previous version 0.5.0 dated 2021-10-29

Title: Date-Time Types and Tools
Description: Provides a comprehensive library for date-time manipulations using a new family of orthogonal date-time classes (durations, time points, zoned-times, and calendars) that partition responsibilities so that the complexities of time zones are only considered when they are really needed. Capabilities include: date-time parsing, formatting, arithmetic, extraction and updating of components, and rounding.
Author: Davis Vaughan [aut, cre], RStudio [cph, fnd]
Maintainer: Davis Vaughan <davis@rstudio.com>

Diff between clock versions 0.5.0 dated 2021-10-29 and 0.6.0 dated 2021-12-02

 DESCRIPTION                                           |    6 
 MD5                                                   |   90 ++--
 NAMESPACE                                             |   11 
 NEWS.md                                               |   19 
 R/calendar.R                                          |  147 +++++++
 R/cpp11.R                                             |    8 
 R/date.R                                              |  256 +++++++++++++
 R/duration.R                                          |   43 +-
 R/gregorian-year-day.R                                |   86 ++++
 R/gregorian-year-month-day.R                          |  109 +++++
 R/gregorian-year-month-weekday.R                      |   72 +++
 R/iso-year-week-day.R                                 |   82 ++++
 R/posixt.R                                            |  191 +++++++++
 R/quarterly-year-quarter-day.R                        |   99 +++++
 R/time-point.R                                        |  143 +++++++
 inst/doc/recipes.R                                    |   85 ++++
 inst/doc/recipes.Rmd                                  |  140 +++++++
 inst/doc/recipes.html                                 |  352 +++++++++++-------
 man/calendar-count-between.Rd                         |only
 man/date-count-between.Rd                             |only
 man/date_count_between.Rd                             |only
 man/iso-year-week-day-count-between.Rd                |only
 man/posixt-count-between.Rd                           |only
 man/time_point_count_between.Rd                       |only
 man/year-day-count-between.Rd                         |only
 man/year-month-day-count-between.Rd                   |only
 man/year-month-weekday-count-between.Rd               |only
 man/year-quarter-day-count-between.Rd                 |only
 src/cpp11.cpp                                         |   16 
 src/duration.cpp                                      |  131 ++++++
 tests/testthat/_snaps/calendar.md                     |   45 ++
 tests/testthat/_snaps/date.md                         |   16 
 tests/testthat/_snaps/duration.md                     |   32 +
 tests/testthat/_snaps/gregorian-year-day.md           |    8 
 tests/testthat/_snaps/gregorian-year-month-day.md     |    8 
 tests/testthat/_snaps/gregorian-year-month-weekday.md |    8 
 tests/testthat/_snaps/iso-year-week-day.md            |    8 
 tests/testthat/_snaps/posixt.md                       |   16 
 tests/testthat/_snaps/quarterly-year-quarter-day.md   |    8 
 tests/testthat/_snaps/time-point.md                   |   65 +++
 tests/testthat/test-calendar.R                        |   31 +
 tests/testthat/test-date.R                            |   27 +
 tests/testthat/test-duration.R                        |   55 ++
 tests/testthat/test-gregorian-year-day.R              |   39 +
 tests/testthat/test-gregorian-year-month-day.R        |   65 +++
 tests/testthat/test-gregorian-year-month-weekday.R    |   65 +++
 tests/testthat/test-iso-year-week-day.R               |   39 +
 tests/testthat/test-posixt.R                          |   78 +++
 tests/testthat/test-quarterly-year-quarter-day.R      |   56 ++
 tests/testthat/test-time-point.R                      |   96 ++++
 vignettes/recipes.Rmd                                 |  140 +++++++
 51 files changed, 2814 insertions(+), 177 deletions(-)

More information about clock at CRAN
Permanent link

New package RAT with initial version 0.1.0
Package: RAT
Title: Research Assessment Tools
Version: 0.1.0
Date: 2021-12-01
Description: Includes algorithms to assess research productivity and patterns, such as the h-index and i-index. Cardoso et al. (subm.) Quantifying the international collaboration of researchers and research institutions.
Depends: R (>= 3.5.0)
Imports: ggplot2, graphics, mapproj, stats, utils, wosr
Encoding: UTF-8
License: GPL-3
LazyData: true
NeedsCompilation: no
Packaged: 2021-12-02 11:23:45 UTC; ungol
Author: Pedro Cardoso [aut, cre], Stefano Mammola [aut]
Maintainer: Pedro Cardoso <pedro.cardoso@helsinki.fi>
Repository: CRAN
Date/Publication: 2021-12-02 14:10:02 UTC

More information about RAT at CRAN
Permanent link

Package qad updated to version 1.0.1 with previous version 1.0.0 dated 2021-02-27

Title: Quantification of Asymmetric Dependence
Description: A copula-based measure for quantifying asymmetry in dependence and associations. Documentation and theory about 'qad' is provided by the paper by Junker, Griessenberger & Trutschnig (2021, <doi:10.1016/j.csda.2020.107058>), and the paper by Trutschnig (2011, <doi:10.1016/j.jmaa.2011.06.013>).
Author: Florian Griessenberger [aut, cre], Robert R. Junker [aut], Valentin Petzel [aut], Wolfgang Trutschnig [aut]
Maintainer: Florian Griessenberger <florian.griessenberger@sbg.ac.at>

Diff between qad versions 1.0.0 dated 2021-02-27 and 1.0.1 dated 2021-12-02

 qad-1.0.0/qad/man/figures/README-example-1.png         |only
 qad-1.0.0/qad/man/figures/README-example-2.png         |only
 qad-1.0.0/qad/man/figures/README-example-3.png         |only
 qad-1.0.0/qad/man/figures/README-unnamed-chunk-2-1.png |only
 qad-1.0.0/qad/man/figures/README-unnamed-chunk-2-2.png |only
 qad-1.0.1/qad/DESCRIPTION                              |   15 ++--
 qad-1.0.1/qad/MD5                                      |   43 +++++++++++---
 qad-1.0.1/qad/NEWS.md                                  |   52 +++++++++--------
 qad-1.0.1/qad/README.md                                |only
 qad-1.0.1/qad/build                                    |only
 qad-1.0.1/qad/inst/doc                                 |only
 qad-1.0.1/qad/man/figures/README-unnamed-chunk-4-1.png |only
 qad-1.0.1/qad/man/figures/hex.png                      |only
 qad-1.0.1/qad/src/RcppExports.cpp                      |    5 +
 qad-1.0.1/qad/tests                                    |only
 qad-1.0.1/qad/vignettes                                |only
 16 files changed, 78 insertions(+), 37 deletions(-)

More information about qad at CRAN
Permanent link

New package rsat with initial version 0.1.16
Package: rsat
Title: Dealing with Multiplatform Satellite Images
Version: 0.1.16
Maintainer: Unai Pérez - Goya <unai.perez@unavarra.es>
Description: Downloading, customizing, and processing time series of satellite images for a region of interest. 'rsat' functions allow a unified access to multispectral images from Landsat, MODIS and Sentinel repositories. 'rsat' also offers capabilities for customizing satellite images, such as tile mosaicking, image cropping and new variables computation. Finally, 'rsat' covers the processing, including cloud masking, compositing and gap-filling/smoothing time series of images (Militino et al., 2018 <doi:10.3390/rs10030398> and Militino et al., 2019 <doi:10.1109/TGRS.2019.2904193>).
Depends: R (>= 4.0.0)
Imports: XML, curl, httr, leafem, leaflet, rjson, rvest, tmap, xml2, zip, methods, sp, Rdpack, fields, calendR, raster, sf, stars, terra
URL: https://github.com/ropensci/rsat
BugReports: https://github.com/ropensci/rsat/issues
RdMacros: Rdpack
Suggests: rgdal, knitr, rmarkdown, covr, testthat
License: GPL-3
Encoding: UTF-8
LazyData: true
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2021-12-02 08:10:44 UTC; unai.perez
Author: Unai Pérez - Goya [aut, cre] (<https://orcid.org/0000-0002-2796-9079>), Manuel Montesino - SanMartin [aut] (<https://orcid.org/0000-0002-0822-600X>), Ana F Militino [aut] (<https://orcid.org/0000-0002-0631-3919>), Maria Dolores Ugarte [aut] (<https://orcid.org/0000-0002-3505-8400>), Marc Weber [rev] (Marc reviewed rsat (v. 0.1.14) for rOpenSci, see <https://github.com/ropensci/software-review/issues/437>), Kelly Hondula [rev] (Kelly reviewed rsat (v. 0.1.14) for rOpenSci, see <https://github.com/ropensci/software-review/issues/437>)
Repository: CRAN
Date/Publication: 2021-12-02 13:40:02 UTC

More information about rsat at CRAN
Permanent link

Package R2BEAT updated to version 1.0.4 with previous version 1.0.3 dated 2021-06-24

Title: Multistage Sampling Allocation and Sample Selection
Description: Multivariate optimal allocation for different domains in one and two stages stratified sample design. R2BEAT extends the Neyman (1934) – Tschuprow (1923) allocation method to the case of several variables, adopting a generalization of the Bethel’s proposal (1989).R2BEAT develops this methodology but, moreover, it allows to determine the sample allocation in the multivariate and multi-domains case of estimates for two-stage stratified samples. It also allows to perform both Primary Stage Units and Secondary Stage Units selection. This package requires the availability of ReGenesees, that can be installed from <https://github.com/DiegoZardetto/ReGenesees>.
Author: Andrea Fasulo,Giulio Barcaroli,Stefano Falorsi,Alessio Guandalini,Daniela Pagliuca,Marco Dionisio Terribili
Maintainer: Andrea Fasulo <fasulo@istat.it>

Diff between R2BEAT versions 1.0.3 dated 2021-06-24 and 1.0.4 dated 2021-12-02

 R2BEAT-1.0.3/R2BEAT/R/StratSel.R                             |only
 R2BEAT-1.0.3/R2BEAT/R/prepareInputToAllocation.R             |only
 R2BEAT-1.0.3/R2BEAT/R/sensitivity.R                          |only
 R2BEAT-1.0.3/R2BEAT/man/StratSel.Rd                          |only
 R2BEAT-1.0.3/R2BEAT/man/prepareInputToAllocation.Rd          |only
 R2BEAT-1.0.3/R2BEAT/man/sensitivity.Rd                       |only
 R2BEAT-1.0.4/R2BEAT/DESCRIPTION                              |   10 
 R2BEAT-1.0.4/R2BEAT/MD5                                      |   69 
 R2BEAT-1.0.4/R2BEAT/NAMESPACE                                |   12 
 R2BEAT-1.0.4/R2BEAT/NEWS.md                                  |   23 
 R2BEAT-1.0.4/R2BEAT/R/beatcv.R                               |  287 +-
 R2BEAT-1.0.4/R2BEAT/R/beth1.R                                |  393 +--
 R2BEAT-1.0.4/R2BEAT/R/beth2.R                                |  442 ++--
 R2BEAT-1.0.4/R2BEAT/R/buildFrameDF.R                         |only
 R2BEAT-1.0.4/R2BEAT/R/buildStrataDF.R                        |only
 R2BEAT-1.0.4/R2BEAT/R/eval_2stage.r                          |only
 R2BEAT-1.0.4/R2BEAT/R/input_to_beat.2st_1.R                  |    2 
 R2BEAT-1.0.4/R2BEAT/R/plot_sens.R                            |only
 R2BEAT-1.0.4/R2BEAT/R/prepareInputToAllocation1.R            |only
 R2BEAT-1.0.4/R2BEAT/R/prepareInputToAllocation2.R            |only
 R2BEAT-1.0.4/R2BEAT/R/select_PSU.R                           |only
 R2BEAT-1.0.4/R2BEAT/R/select_SSU.R                           |   80 
 R2BEAT-1.0.4/R2BEAT/R/sensitivity_min_SSU.R                  |only
 R2BEAT-1.0.4/R2BEAT/R/sensitivity_min_SSU2.R                 |only
 R2BEAT-1.0.4/R2BEAT/inst/doc/R2BEAT_methodology.html         |    2 
 R2BEAT-1.0.4/R2BEAT/inst/doc/R2BEAT_workflow.html            |  932 +++-----
 R2BEAT-1.0.4/R2BEAT/inst/doc/R2BEAT_workflow_from_frame.html | 1168 ++++-------
 R2BEAT-1.0.4/R2BEAT/inst/doc/index.html                      |only
 R2BEAT-1.0.4/R2BEAT/man/PSU_strat.Rd                         |    2 
 R2BEAT-1.0.4/R2BEAT/man/beatcv.Rd                            |    3 
 R2BEAT-1.0.4/R2BEAT/man/beth2.Rd                             |   54 
 R2BEAT-1.0.4/R2BEAT/man/deft_start.Rd                        |    2 
 R2BEAT-1.0.4/R2BEAT/man/design.Rd                            |    2 
 R2BEAT-1.0.4/R2BEAT/man/effst.Rd                             |    3 
 R2BEAT-1.0.4/R2BEAT/man/errors.Rd                            |    2 
 R2BEAT-1.0.4/R2BEAT/man/eval_2stage.Rd                       |only
 R2BEAT-1.0.4/R2BEAT/man/input_to_beat.2st_1.Rd               |   10 
 R2BEAT-1.0.4/R2BEAT/man/input_to_beat.2st_2.Rd               |    7 
 R2BEAT-1.0.4/R2BEAT/man/plot_sens.Rd                         |only
 R2BEAT-1.0.4/R2BEAT/man/prepareInputToAllocation1.Rd         |only
 R2BEAT-1.0.4/R2BEAT/man/prepareInputToAllocation2.Rd         |only
 R2BEAT-1.0.4/R2BEAT/man/rho.Rd                               |    2 
 R2BEAT-1.0.4/R2BEAT/man/select_PSU.Rd                        |only
 R2BEAT-1.0.4/R2BEAT/man/select_SSU.Rd                        |   48 
 R2BEAT-1.0.4/R2BEAT/man/sensitivity_min_SSU.Rd               |only
 R2BEAT-1.0.4/R2BEAT/man/sensitivity_min_SSU2.Rd              |only
 R2BEAT-1.0.4/R2BEAT/man/strata.Rd                            |    2 
 47 files changed, 1653 insertions(+), 1904 deletions(-)

More information about R2BEAT at CRAN
Permanent link

New package renz with initial version 0.1.1
Package: renz
Title: R-Enzymology
Version: 0.1.1
Author: Juan Carlos Aledo
Maintainer: Juan Carlos Aledo <caledo@uma.es>
Description: Contains utilities for the analysis of Michaelian kinetic data. Beside the classical linearization methods (Lineweaver-Burk, Eadie-Hofstee, Hanes-Woolf and Eisenthal-Cornish-Bowden), features include the ability to carry out weighted regression analysis that, in most cases, substantially improves the estimation of kinetic parameters (Aledo (2021) <doi:10.1002/bmb.21522>). To avoid data transformation and the potential biases introduced by them, the package also offers functions to directly fitting data to the Michaelis-Menten equation, either using ([S], v) or (time, [S]) data. Utilities to simulate substrate progress-curves (making use of the Lambert W function) are also provided. The package is accompanied of vignettes that aim to orientate the user in the choice of the most suitable method to estimate the kinetic parameter of an Michaelian enzyme.
License: GPL (>= 2)
Encoding: UTF-8
LazyData: true
Depends: R (>= 4.0.0)
Imports: graphics, stats, VGAM
Suggests: knitr, rmarkdown, testthat
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2021-12-02 10:39:34 UTC; JCA
Repository: CRAN
Date/Publication: 2021-12-02 13:50:02 UTC

More information about renz at CRAN
Permanent link

New package quiltr with initial version 0.1.0
Package: quiltr
Title: Qualtrics for Labelling Text using R
Version: 0.1.0
Description: Functions to convert text data for labelling into format appropriate for importing into Qualtrics. Supports multiple language, including right-to-left scripts as well as different response types. Outputs an Advance Format .txt file that read into Qualtrics.
License: MIT + file LICENSE
Language: en-US
Encoding: UTF-8
LazyData: true
Suggests: covr, knitr, rmarkdown, testthat (>= 3.0.0)
Depends: R (>= 2.10)
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2021-12-02 10:24:57 UTC; cbarrie6
Author: Christopher Barrie [aut, cre] (<https://orcid.org/0000-0002-9156-990X>)
Maintainer: Christopher Barrie <christopher.barrie@ed.ac.uk>
Repository: CRAN
Date/Publication: 2021-12-02 13:40:07 UTC

More information about quiltr at CRAN
Permanent link

Package MorphoTools2 updated to version 0.9.1 with previous version 0.9.0 dated 2021-11-22

Title: Multivariate Morphometric Analysis
Description: Tools for multivariate analyses of morphological data, wrapped in one package, to make the workflow convenient and fast. Statistical and graphical tools provide a comprehensive framework for checking and manipulating input data, statistical analyses, and visualization of results. Several methods are provided for the analysis of raw data, to make the dataset ready for downstream analyses. Integrated statistical methods include hierarchical classification, principal component analysis, principal coordinates analysis, non-metric multidimensional scaling, and multiple discriminant analyses: canonical, stepwise, and classificatory (linear, quadratic, and the non-parametric k nearest neighbours). The philosophy of the package will be described in Šlenker et al. (in prep).
Author: Marek Šlenker [aut, cre] (https://orcid.org/0000-0002-5919-890X) Petr Koutecký [ctb] (https://orcid.org/0000-0002-3455-850X) Karol Marhold [ctb] (https://orcid.org/0000-0002-7658-0844)
Maintainer: Marek Šlenker <marek.slenker@savba.sk>

Diff between MorphoTools2 versions 0.9.0 dated 2021-11-22 and 0.9.1 dated 2021-12-02

 MorphoTools2-0.9.0/MorphoTools2/inst/CITATION                              |only
 MorphoTools2-0.9.1/MorphoTools2/DESCRIPTION                                |   12 ++--
 MorphoTools2-0.9.1/MorphoTools2/MD5                                        |   21 ++++----
 MorphoTools2-0.9.1/MorphoTools2/R/pcoa.calc.R                              |   25 +++++-----
 MorphoTools2-0.9.1/MorphoTools2/R/zzz.R                                    |    2 
 MorphoTools2-0.9.1/MorphoTools2/README.md                                  |    6 +-
 MorphoTools2-0.9.1/MorphoTools2/inst/doc/MorphoTools2_tutorial.R           |    2 
 MorphoTools2-0.9.1/MorphoTools2/inst/doc/MorphoTools2_tutorial.Rmd         |    4 -
 MorphoTools2-0.9.1/MorphoTools2/inst/doc/MorphoTools2_tutorial.pdf         |binary
 MorphoTools2-0.9.1/MorphoTools2/tests/testthat/test.pcoa.calc.R            |    7 +-
 MorphoTools2-0.9.1/MorphoTools2/tests/testthat/test.plot.points.pcoadata.R |    4 -
 MorphoTools2-0.9.1/MorphoTools2/vignettes/MorphoTools2_tutorial.Rmd        |    4 -
 12 files changed, 44 insertions(+), 43 deletions(-)

More information about MorphoTools2 at CRAN
Permanent link

Package MNARclust updated to version 1.1.0 with previous version 1.0.0 dated 2021-07-16

Title: Clustering Data with Non-Ignorable Missingness using Semi-Parametric Mixture Models
Description: Clustering of data under a non-ignorable missingness mechanism. Clustering is achieved by a semi-parametric mixture model and missingness is managed by using the pattern-mixture approach. More details of the approach are available in Du Roy de Chaumaray et al. (2020) <arXiv:2009.07662>.
Author: Marie Du Roy de Chaumaray [aut], Matthieu Marbac [aut, cre, cph]
Maintainer: Matthieu Marbac <matthieu.marbac-lourdelle@ensai.fr>

Diff between MNARclust versions 1.0.0 dated 2021-07-16 and 1.1.0 dated 2021-12-02

 DESCRIPTION              |    6 +++---
 MD5                      |   10 +++++-----
 R/MNARclust.R            |    4 ++--
 R/tools.R                |   14 +++++++-------
 man/MNARclust-package.Rd |    4 ++--
 src/MNARclust.cpp        |    2 +-
 6 files changed, 20 insertions(+), 20 deletions(-)

More information about MNARclust at CRAN
Permanent link

Package cmsafvis updated to version 1.1.9 with previous version 1.1.8 dated 2021-11-02

Title: Tools to Visualize CM SAF NetCDF Data
Description: The Satellite Application Facility on Climate Monitoring (CM SAF) is a ground segment of the European Organization for the Exploitation of Meteorological Satellites (EUMETSAT) and one of EUMETSATs Satellite Application Facilities. The CM SAF contributes to the sustainable monitoring of the climate system by providing essential climate variables related to the energy and water cycle of the atmosphere (<https://www.cmsaf.eu>). It is a joint cooperation of eight National Meteorological and Hydrological Services. The 'cmsafvis' R-package provides a collection of R-operators for the analysis and visualization of CM SAF NetCDF data. CM SAF climate data records are provided for free via (<https://wui.cmsaf.eu/safira>). Detailed information and test data are provided on the CM SAF webpage (<http://www.cmsaf.eu/R_toolbox>).
Author: Steffen Kothe [aut, cre], Danny Parsons [ctb]
Maintainer: Steffen Kothe <Steffen.Kothe@dwd.de>

Diff between cmsafvis versions 1.1.8 dated 2021-11-02 and 1.1.9 dated 2021-12-02

 DESCRIPTION                       |   11 +-
 MD5                               |   42 +++++-----
 NAMESPACE                         |    1 
 NEWS.md                           |    9 ++
 R/calculate_climatology_outfile.R |    2 
 R/cmsaf.hist.R                    |    4 -
 R/cmsaf.hovmoller.R               |    4 -
 R/cmsaf.side.by.side.R            |    4 -
 R/extractFinalOutfile.R           |    2 
 R/extractOutfile.R                |    2 
 R/extractOutfileMean.R            |    2 
 R/fieldmean_ensemble.R            |   22 +++--
 R/fieldmean_plot.R                |    1 
 R/getColors.R                     |  119 +++++++++++++++++-------------
 R/get_basename_vis.R              |only
 R/plot_fieldmean.R                |   32 +++++---
 R/quicklook.R                     |    2 
 R/render_plot.R                   |   30 +++----
 R/render_plot_side_by_side.R      |   58 +++++++--------
 R/render_region_plot.R            |   28 +++----
 build/partial.rdb                 |binary
 man/cmsafvis.Rd                   |  146 +++++++++++++++++++-------------------
 man/get_basename_vis.Rd           |only
 23 files changed, 285 insertions(+), 236 deletions(-)

More information about cmsafvis at CRAN
Permanent link

Package cmsafops updated to version 1.2.2 with previous version 1.2.1 dated 2021-10-14

Title: Tools for CM SAF NetCDF Data
Description: The Satellite Application Facility on Climate Monitoring (CM SAF) is a ground segment of the European Organization for the Exploitation of Meteorological Satellites (EUMETSAT) and one of EUMETSATs Satellite Application Facilities. The CM SAF contributes to the sustainable monitoring of the climate system by providing essential climate variables related to the energy and water cycle of the atmosphere (<https://www.cmsaf.eu>). It is a joint cooperation of eight National Meteorological and Hydrological Services. The 'cmsafops' R-package provides a collection of R-operators for the analysis and manipulation of CM SAF NetCDF formatted data. Other CF conform NetCDF data with time, longitude and latitude dimension should be applicable, but there is no guarantee for an error-free application. CM SAF climate data records are provided for free via (<https://wui.cmsaf.eu/safira>). Detailed information and test data are provided on the CM SAF webpage (<http://www.cmsaf.eu/R_toolbox>).
Author: Steffen Kothe [aut, cre], Danny Parsons [ctb]
Maintainer: Steffen Kothe <Steffen.Kothe@dwd.de>

Diff between cmsafops versions 1.2.1 dated 2021-10-14 and 1.2.2 dated 2021-12-02

 DESCRIPTION                            |    8 
 MD5                                    |  302 ++--
 NEWS.md                                |    4 
 R/acsaf_box_mergetime.R                |  856 +++++------
 R/arith_wrapper.R                      |    8 
 R/arithc_wrapper.R                     |    8 
 R/box_mergetime.R                      |    4 
 R/cmsaf.abs.R                          |    2 
 R/cmsaf.cat.R                          |    2 
 R/cmsaf.detrend.R                      |    2 
 R/cmsaf.regres.R                       |    2 
 R/cmsaf.sub.rel.R                      |    2 
 R/dayrange.R                           |    2 
 R/dayx_wrapper.R                       |   16 
 R/extract.level.R                      |    2 
 R/extract.period.R                     |    2 
 R/fld_cor_covar_wrapper.R              |    4 
 R/fldx_wrapper.R                       |   14 
 R/gridboxx_wrapper.R                   |   14 
 R/hourx_wrapper.R                      |    4 
 R/merx_wrapper.R                       |    2 
 R/mon.anomaly.R                        |    2 
 R/mon.anomaly.climatology.R            |    2 
 R/mon_num_wrapper.R                    |    6 
 R/mondaymean.R                         |    2 
 R/monx_wrapper.R                       |   16 
 R/multimonmean.R                       |    2 
 R/multimonsum.R                        |    2 
 R/remap.R                              |    2 
 R/runx_wrapper.R                       |   12 
 R/seas.anomaly.R                       |    2 
 R/seasx_wrapper.R                      |    8 
 R/sellonlatbox.R                       |    2 
 R/selmon.R                             |    2 
 R/selperiod.R                          |    2 
 R/selpoint.R                           |    2 
 R/selpoint.multi.R                     |    2 
 R/seltime.R                            |    2 
 R/selyear.R                            |    2 
 R/trend.R                              |    2 
 R/trend_advanced.R                     |    2 
 R/wfldmean.R                           |    6 
 R/xdpm_wrapper.R                       |    4 
 R/ydaymean.R                           |    2 
 R/ydayx_wrapper.R                      |   10 
 R/ydrunx_wrapper.R                     |    6 
 R/year.anomaly.R                       |    2 
 R/yearmean.R                           |    2 
 R/yearsum.R                            |    2 
 R/yearx_wrapper.R                      |   10 
 R/ymonx_wrapper.R                      |   10 
 R/yseasx_wrapper.R                     |    8 
 R/zonx_wrapper.R                       |    4 
 build/partial.rdb                      |binary
 man/cmsafops.Rd                        |  280 +--
 man/wfldmean.Rd                        |    6 
 tests/testthat/test_box_mergetime.R    | 2310 +++++++++++++++----------------
 tests/testthat/test_cmsaf.abs.R        |  406 ++---
 tests/testthat/test_cmsaf.add.R        |    2 
 tests/testthat/test_cmsaf.addc.R       | 1954 +++++++++++++-------------
 tests/testthat/test_cmsaf.cat.R        | 1558 ++++++++++-----------
 tests/testthat/test_cmsaf.detrend.R    |  394 ++---
 tests/testthat/test_cmsaf.div.R        | 1978 +++++++++++++-------------
 tests/testthat/test_cmsaf.divc.R       | 1808 ++++++++++++------------
 tests/testthat/test_cmsaf.mul.R        | 1944 +++++++++++++-------------
 tests/testthat/test_cmsaf.mulc.R       | 1946 +++++++++++++-------------
 tests/testthat/test_cmsaf.regres.R     |  378 ++---
 tests/testthat/test_cmsaf.sub.R        | 1890 ++++++++++++-------------
 tests/testthat/test_cmsaf.subc.R       | 1934 +++++++++++++-------------
 tests/testthat/test_dayavg.R           | 1376 +++++++++---------
 tests/testthat/test_daymax.R           | 1376 +++++++++---------
 tests/testthat/test_daymean.R          | 1376 +++++++++---------
 tests/testthat/test_daymin.R           | 1376 +++++++++---------
 tests/testthat/test_daypctl.R          | 1376 +++++++++---------
 tests/testthat/test_dayrange.R         | 1256 ++++++++---------
 tests/testthat/test_daysd.R            | 1376 +++++++++---------
 tests/testthat/test_daysum.R           | 1376 +++++++++---------
 tests/testthat/test_dayvar.R           | 1376 +++++++++---------
 tests/testthat/test_divdpm.R           | 1180 +++++++--------
 tests/testthat/test_extract.level.R    | 2438 ++++++++++++++++-----------------
 tests/testthat/test_extract.period.R   |  744 +++++-----
 tests/testthat/test_fldcor.R           |  168 +-
 tests/testthat/test_fldcovar.R         |  168 +-
 tests/testthat/test_fldmax.R           |  392 ++---
 tests/testthat/test_fldmean.R          |  390 ++---
 tests/testthat/test_fldmin.R           |  390 ++---
 tests/testthat/test_fldrange.R         |  392 ++---
 tests/testthat/test_fldsd.R            |  392 ++---
 tests/testthat/test_fldsum.R           |  392 ++---
 tests/testthat/test_gridboxmax.R       |  244 +--
 tests/testthat/test_gridboxmean.R      |  244 +--
 tests/testthat/test_gridboxmin.R       |  244 +--
 tests/testthat/test_gridboxrange.R     |  244 +--
 tests/testthat/test_gridboxsd.R        |  244 +--
 tests/testthat/test_gridboxsum.R       |  244 +--
 tests/testthat/test_gridboxvar.R       |  244 +--
 tests/testthat/test_hourmean.R         | 1376 +++++++++---------
 tests/testthat/test_hoursum.R          | 1376 +++++++++---------
 tests/testthat/test_levbox_mergetime.R |  192 +-
 tests/testthat/test_mermean.R          |  184 +-
 tests/testthat/test_monavg.R           |  422 ++---
 tests/testthat/test_mondaymean.R       |    2 
 tests/testthat/test_monmax.R           |  412 ++---
 tests/testthat/test_monmean.R          |  410 ++---
 tests/testthat/test_monmin.R           |  410 ++---
 tests/testthat/test_monpctl.R          |  428 ++---
 tests/testthat/test_monsd.R            |  416 ++---
 tests/testthat/test_monsum.R           |  414 ++---
 tests/testthat/test_monvar.R           |  428 ++---
 tests/testthat/test_runmax.R           |  188 +-
 tests/testthat/test_runmean.R          |  192 +-
 tests/testthat/test_runmin.R           |  190 +-
 tests/testthat/test_runrange.R         |  172 +-
 tests/testthat/test_runsd.R            |  188 +-
 tests/testthat/test_runsum.R           |  190 +-
 tests/testthat/test_seassd.R           |  260 +--
 tests/testthat/test_seasvar.R          |  260 +--
 tests/testthat/test_sellonlatbox.R     | 2264 +++++++++++++++---------------
 tests/testthat/test_selmon.R           | 1834 ++++++++++++------------
 tests/testthat/test_selperiod.R        | 1832 ++++++++++++------------
 tests/testthat/test_selpoint.R         | 1728 +++++++++++------------
 tests/testthat/test_seltime.R          | 1518 ++++++++++----------
 tests/testthat/test_selyear.R          | 1832 ++++++++++++------------
 tests/testthat/test_wfldmean.R         |  382 ++---
 tests/testthat/test_ydaymax.R          |  534 +++----
 tests/testthat/test_ydaymean.R         |  508 +++---
 tests/testthat/test_ydaymin.R          |  534 +++----
 tests/testthat/test_ydayrange.R        |  466 +++---
 tests/testthat/test_ydaysd.R           |  466 +++---
 tests/testthat/test_ydaysum.R          |  534 +++----
 tests/testthat/test_ydrunmean.R        |  242 +--
 tests/testthat/test_ydrunsd.R          |  246 +--
 tests/testthat/test_ydrunsum.R         |  238 +--
 tests/testthat/test_year.anomaly.R     |  386 ++---
 tests/testthat/test_yearmax.R          |  406 ++---
 tests/testthat/test_yearmean.R         |  388 ++---
 tests/testthat/test_yearmin.R          |  406 ++---
 tests/testthat/test_yearrange.R        |  406 ++---
 tests/testthat/test_yearsd.R           |  406 ++---
 tests/testthat/test_yearsum.R          |  396 ++---
 tests/testthat/test_yearvar.R          |  406 ++---
 tests/testthat/test_ymonmax.R          |  886 +++++------
 tests/testthat/test_ymonmean.R         |  408 ++---
 tests/testthat/test_ymonmin.R          |  408 ++---
 tests/testthat/test_ymonsd.R           |  414 ++---
 tests/testthat/test_ymonsum.R          |  408 ++---
 tests/testthat/test_yseasmax.R         |  404 ++---
 tests/testthat/test_yseasmean.R        |  404 ++---
 tests/testthat/test_yseasmin.R         |  404 ++---
 tests/testthat/test_yseassd.R          |  408 ++---
 tests/testthat/test_zonmean.R          |  176 +-
 tests/testthat/test_zonsum.R           |  176 +-
 152 files changed, 36086 insertions(+), 36084 deletions(-)

More information about cmsafops at CRAN
Permanent link

Package cmsaf updated to version 3.3.1 with previous version 3.3.0 dated 2021-10-14

Title: A Toolbox for CM SAF NetCDF Data
Description: The Satellite Application Facility on Climate Monitoring (CM SAF) is a ground segment of the European Organization for the Exploitation of Meteorological Satellites (EUMETSAT) and one of EUMETSATs Satellite Application Facilities. The CM SAF contributes to the sustainable monitoring of the climate system by providing essential climate variables related to the energy and water cycle of the atmosphere (<https://www.cmsaf.eu>). It is a joint cooperation of eight National Meteorological and Hydrological Services. The 'cmsaf' R-package includes a 'shiny' based interface for an easy application of the 'cmsafops' and 'cmsafvis' packages - the CM SAF R Toolbox. The Toolbox offers an easy way to prepare, manipulate, analyse and visualize CM SAF NetCDF formatted data. Other CF conform NetCDF data with time, longitude and latitude dimension should be applicable, but there is no guarantee for an error-free application. CM SAF climate data records are provided for free via (<https://wui.cmsaf.eu/safira>). Detailed information and test data are provided on the CM SAF webpage (<http://www.cmsaf.eu/R_toolbox>).
Author: Steffen Kothe [aut, cre], Danny Parsons [ctb]
Maintainer: Steffen Kothe <Steffen.Kothe@dwd.de>

Diff between cmsaf versions 3.3.0 dated 2021-10-14 and 3.3.1 dated 2021-12-02

 DESCRIPTION                           |    8 -
 MD5                                   |   15 +--
 NEWS.md                               |    8 +
 build/partial.rdb                     |binary
 inst/WORDLIST                         |    7 +
 inst/toolbox/global.R                 |    2 
 inst/toolbox/server.R                 |  157 +++++++++++++++++++++++++++++++---
 inst/toolbox/ui.R                     |   13 ++
 inst/toolbox/www/images/pal_larry.png |only
 9 files changed, 183 insertions(+), 27 deletions(-)

More information about cmsaf at CRAN
Permanent link

Package ClusPred updated to version 1.1.0 with previous version 1.0.0 dated 2021-06-18

Title: Simultaneous Semi-Parametric Estimation of Clustering and Regression
Description: Parameter estimation of regression models with fixed group effects, when the group variable is missing while group-related variables are available. Parametric and semi-parametric approaches described in Marbac et al. (2020) <arXiv:2012.14159> are implemented.
Author: Matthieu Marbac [aut, cre, cph], Mohammed Sedki [aut], Christophe Biernacki [aut], Vincent Vandewalle [aut]
Maintainer: Matthieu Marbac <matthieu.marbac-lourdelle@ensai.fr>

Diff between ClusPred versions 1.0.0 dated 2021-06-18 and 1.1.0 dated 2021-12-02

 DESCRIPTION             |    6 +++---
 MD5                     |   10 +++++-----
 R/Singleblock_algo_NP.R |    2 +-
 R/cluspred.R            |    4 ++--
 man/ClusPred-package.Rd |    4 ++--
 src/ClusPred.cpp        |    6 +++---
 6 files changed, 16 insertions(+), 16 deletions(-)

More information about ClusPred at CRAN
Permanent link

Package NetSci updated to version 0.1.2 with previous version 0.1.1 dated 2021-08-03

Title: Calculates Basic Network Measures Commonly Used in Network Medicine
Description: Calculates network measures such as Largest Connected Component (LCC), Proximity, Separation, Jaccard Index, along with permutation, when needed.
Author: Deisy Gysi
Maintainer: Deisy Morselli Gysi <deisy.ccnr@gmail.com>

Diff between NetSci versions 0.1.1 dated 2021-08-03 and 0.1.2 dated 2021-12-02

 DESCRIPTION                    |    8 +-
 MD5                            |   16 +++-
 NAMESPACE                      |   10 +++
 R/Global.R                     |   16 ++++
 R/Internal.R                   |  134 ++++++++++++++++++++++++++++++++++++++++-
 R/Separation.R                 |   19 ++---
 R/extract_LCC.R                |only
 R/separation_Significance.R    |only
 man/extract_LCC.Rd             |only
 man/separation.Rd              |   18 +++++
 man/separation_Significance.Rd |only
 11 files changed, 198 insertions(+), 23 deletions(-)

More information about NetSci at CRAN
Permanent link

Package dialrjars updated to version 8.12.38 with previous version 8.12.29 dated 2021-08-23

Title: Required 'libphonenumber' jars for the 'dialr' Package
Description: Collects 'libphonenumber' jars required for the 'dialr' package.
Author: Danny Smith [aut, cre], Google Inc. [ctb, cph] (libphonenumber), Vonage Holdings Corp. [ctb, cph] (libphonenumber), Ian Galpin [ctb, cph] (libphonenumber), Ben Gertzfield [ctb, cph] (libphonenumber)
Maintainer: Danny Smith <danny@gorcha.org>

Diff between dialrjars versions 8.12.29 dated 2021-08-23 and 8.12.38 dated 2021-12-02

 dialrjars-8.12.29/dialrjars/inst/java/carrier-1.155.jar          |only
 dialrjars-8.12.29/dialrjars/inst/java/geocoder-2.165.jar         |only
 dialrjars-8.12.29/dialrjars/inst/java/libphonenumber-8.12.29.jar |only
 dialrjars-8.12.29/dialrjars/inst/java/prefixmapper-2.165.jar     |only
 dialrjars-8.12.38/dialrjars/DESCRIPTION                          |    6 
 dialrjars-8.12.38/dialrjars/MD5                                  |   12 -
 dialrjars-8.12.38/dialrjars/NEWS.md                              |   80 ++++++++++
 dialrjars-8.12.38/dialrjars/inst/java/carrier-1.164.jar          |only
 dialrjars-8.12.38/dialrjars/inst/java/geocoder-2.174.jar         |only
 dialrjars-8.12.38/dialrjars/inst/java/libphonenumber-8.12.38.jar |only
 dialrjars-8.12.38/dialrjars/inst/java/prefixmapper-2.174.jar     |only
 11 files changed, 89 insertions(+), 9 deletions(-)

More information about dialrjars at CRAN
Permanent link

Package elasdics updated to version 0.1.4 with previous version 0.1.3 dated 2021-10-28

Title: Elastic Analysis of Sparse, Dense and Irregular Curves
Description: Provides functions to align curves and to compute mean curves based on the elastic distance defined in the square-root-velocity framework. For more details on this framework see Srivastava and Klassen (2016, <doi:10.1007/978-1-4939-4020-2>). For more theoretical details on our methods and algorithms see Steyer et al. (2021, <arXiv:2104.11039>).
Author: Lisa Steyer <lisa.steyer@hu-berlin.de>
Maintainer: Lisa Steyer <lisa.steyer@hu-berlin.de>

Diff between elasdics versions 0.1.3 dated 2021-10-28 and 0.1.4 dated 2021-12-02

 DESCRIPTION      |    6 +++---
 MD5              |    4 ++--
 R/align_curves.R |    2 +-
 3 files changed, 6 insertions(+), 6 deletions(-)

More information about elasdics at CRAN
Permanent link

Package PSweight updated to version 1.1.6 with previous version 1.1.5 dated 2021-10-28

Title: Propensity Score Weighting for Causal Inference with Observational Studies and Randomized Trials
Description: Supports propensity score weighting analysis of observational studies and randomized trials. Enables the estimation and inference of average causal effects with binary and multiple treatments using overlap weights (ATO), inverse probability of treatment weights (ATE), average treatment effect among the treated weights (ATT), matching weights (ATM) and entropy weights (ATEN), with and without propensity score trimming. These weights are members of the family of balancing weights introduced in Li, Morgan and Zaslavsky (2018) <doi:10.1080/01621459.2016.1260466> and Li and Li (2019) <doi:10.1214/19-AOAS1282>.
Author: Tianhui Zhou [aut, cre], Guangyu Tong [aut], Fan Li [aut], Laine Thomas [aut], Fan Li [aut]
Maintainer: Tianhui Zhou <tianhui.zhou@duke.edu>

Diff between PSweight versions 1.1.5 dated 2021-10-28 and 1.1.6 dated 2021-12-02

 DESCRIPTION |    9 +++++----
 MD5         |    7 ++++++-
 build       |only
 inst        |only
 vignettes   |only
 5 files changed, 11 insertions(+), 5 deletions(-)

More information about PSweight at CRAN
Permanent link

Package japanmesh updated to version 0.1.1 with previous version 0.1.0 dated 2021-11-19

Title: Functions for the Japanese Regional Mesh Codes ('JIS X 0410')
Description: Functions for the Japanese regional mesh codes defined in 'JIS X 0410' (<https://www.jisc.go.jp/app/jis/general/GnrJISNumberNameSearchList?show&jisStdNo=X0410>). Conversion between regional mesh codes and longitude/latitude, and between mesh codes of different scales.
Author: Mizuki Uchida [aut, cre]
Maintainer: Mizuki Uchida <uchidamizuki@vivaldi.net>

Diff between japanmesh versions 0.1.0 dated 2021-11-19 and 0.1.1 dated 2021-12-02

 japanmesh-0.1.0/japanmesh/R/sfc.R                                   |only
 japanmesh-0.1.0/japanmesh/R/zoom.R                                  |only
 japanmesh-0.1.0/japanmesh/man/sfc.Rd                                |only
 japanmesh-0.1.0/japanmesh/tests/testthat/test-sfc.R                 |only
 japanmesh-0.1.1/japanmesh/DESCRIPTION                               |   35 
 japanmesh-0.1.1/japanmesh/MD5                                       |   83 +-
 japanmesh-0.1.1/japanmesh/NAMESPACE                                 |    4 
 japanmesh-0.1.1/japanmesh/NEWS.md                                   |   13 
 japanmesh-0.1.1/japanmesh/R/XY.R                                    |   19 
 japanmesh-0.1.1/japanmesh/R/data.R                                  |only
 japanmesh-0.1.1/japanmesh/R/deprecated.R                            |only
 japanmesh-0.1.1/japanmesh/R/distance.R                              |   12 
 japanmesh-0.1.1/japanmesh/R/grid.R                                  |only
 japanmesh-0.1.1/japanmesh/R/japanmesh.R                             |   14 
 japanmesh-0.1.1/japanmesh/R/line.R                                  |   16 
 japanmesh-0.1.1/japanmesh/R/mesh.R                                  |  190 ++---
 japanmesh-0.1.1/japanmesh/R/move.R                                  |   11 
 japanmesh-0.1.1/japanmesh/R/sf.R                                    |only
 japanmesh-0.1.1/japanmesh/R/subdivide.R                             |only
 japanmesh-0.1.1/japanmesh/R/utils.R                                 |    2 
 japanmesh-0.1.1/japanmesh/README.md                                 |  362 +++-------
 japanmesh-0.1.1/japanmesh/data                                      |only
 japanmesh-0.1.1/japanmesh/man/bbox_to_mesh.Rd                       |only
 japanmesh-0.1.1/japanmesh/man/figures/README-unnamed-chunk-10-1.png |only
 japanmesh-0.1.1/japanmesh/man/figures/README-unnamed-chunk-11-1.png |only
 japanmesh-0.1.1/japanmesh/man/figures/README-unnamed-chunk-12-1.png |only
 japanmesh-0.1.1/japanmesh/man/figures/README-unnamed-chunk-13-1.png |only
 japanmesh-0.1.1/japanmesh/man/figures/README-unnamed-chunk-14-1.png |only
 japanmesh-0.1.1/japanmesh/man/figures/README-unnamed-chunk-4-1.png  |binary
 japanmesh-0.1.1/japanmesh/man/figures/README-unnamed-chunk-5-1.png  |only
 japanmesh-0.1.1/japanmesh/man/figures/README-unnamed-chunk-7-1.png  |binary
 japanmesh-0.1.1/japanmesh/man/figures/README-unnamed-chunk-8-1.png  |binary
 japanmesh-0.1.1/japanmesh/man/figures/README-unnamed-chunk-9-1.png  |binary
 japanmesh-0.1.1/japanmesh/man/figures/lifecycle-archived.svg        |only
 japanmesh-0.1.1/japanmesh/man/figures/lifecycle-defunct.svg         |only
 japanmesh-0.1.1/japanmesh/man/figures/lifecycle-deprecated.svg      |only
 japanmesh-0.1.1/japanmesh/man/figures/lifecycle-experimental.svg    |only
 japanmesh-0.1.1/japanmesh/man/figures/lifecycle-maturing.svg        |only
 japanmesh-0.1.1/japanmesh/man/figures/lifecycle-questioning.svg     |only
 japanmesh-0.1.1/japanmesh/man/figures/lifecycle-stable.svg          |only
 japanmesh-0.1.1/japanmesh/man/figures/lifecycle-superseded.svg      |only
 japanmesh-0.1.1/japanmesh/man/geometry_to_mesh.Rd                   |only
 japanmesh-0.1.1/japanmesh/man/japanmesh.Rd                          |only
 japanmesh-0.1.1/japanmesh/man/mesh_city2015.Rd                      |only
 japanmesh-0.1.1/japanmesh/man/mesh_class.Rd                         |    2 
 japanmesh-0.1.1/japanmesh/man/mesh_distance.Rd                      |    2 
 japanmesh-0.1.1/japanmesh/man/mesh_grid.Rd                          |only
 japanmesh-0.1.1/japanmesh/man/mesh_line.Rd                          |    2 
 japanmesh-0.1.1/japanmesh/man/mesh_move.Rd                          |    4 
 japanmesh-0.1.1/japanmesh/man/mesh_neighbor.Rd                      |    4 
 japanmesh-0.1.1/japanmesh/man/mesh_subdivide.Rd                     |only
 japanmesh-0.1.1/japanmesh/man/mesh_to_geometry.Rd                   |only
 japanmesh-0.1.1/japanmesh/man/mesh_zoomin.Rd                        |    9 
 japanmesh-0.1.1/japanmesh/man/mesh_zoomout.Rd                       |    9 
 japanmesh-0.1.1/japanmesh/man/point_to_mesh.Rd                      |    6 
 japanmesh-0.1.1/japanmesh/tests/testthat/test-XY.R                  |   37 -
 japanmesh-0.1.1/japanmesh/tests/testthat/test-grid.R                |only
 japanmesh-0.1.1/japanmesh/tests/testthat/test-sf.R                  |only
 japanmesh-0.1.1/japanmesh/tests/testthat/test-zoom.R                |   17 
 59 files changed, 438 insertions(+), 415 deletions(-)

More information about japanmesh at CRAN
Permanent link

New package hacksig with initial version 0.1.1
Package: hacksig
Title: A Tidy Framework to Hack Gene Expression Signatures
Version: 0.1.1
Description: A collection of cancer transcriptomics gene signatures as well as a simple and tidy interface to compute single sample enrichment scores either with the original procedure or with three alternatives: the "combined z-score" of Lee et al. (2008) <doi:10.1371/journal.pcbi.1000217>, the "single sample GSEA" of Barbie et al. (2009) <doi:10.1038/nature08460> and the "singscore" of Foroutan et al. (2018) <doi:10.1186/s12859-018-2435-4>. The 'get_sig_info()' function can be used to retrieve information about each signature implemented.
License: MIT + file LICENSE
URL: https://github.com/Acare/hacksig
BugReports: https://github.com/Acare/hacksig/issues
Encoding: UTF-8
LazyData: true
Depends: R (>= 4.0)
Imports: dplyr (>= 1.0.7), future.apply (>= 1.8.1), rlang (>= 0.4.11), stats (>= 4.0.5), tibble (>= 3.1.5), tidyr (>= 1.1.4)
Suggests: covr, future (>= 1.22.1), ggplot2 (>= 3.3.5), knitr (>= 1.36), msigdbr (>= 7.4.1), purrr (>= 0.3.4), rmarkdown (>= 2.11)
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2021-12-01 15:54:03 UTC; andrea
Author: Andrea Carenzo [aut, cre] (<https://orcid.org/0000-0001-6804-9984>), Loris De Cecco [aut] (<https://orcid.org/0000-0002-7066-473X>), Federico Pistore [aut]
Maintainer: Andrea Carenzo <andrea.carenzo@gmail.com>
Repository: CRAN
Date/Publication: 2021-12-02 08:50:05 UTC

More information about hacksig at CRAN
Permanent link

New package gplsim with initial version 0.9.0
Package: gplsim
Title: Penalized Spline Estimation for GPLSIM
Version: 0.9.0
Date: 2021-11-24
Description: We provides functions that employ penalized spline (P-spline) to estimate generalized partially linear single index models (GPLSIM), which extend the generalized linear models to include nonlinear effect for some predictors. Please see Y. (2017) at <doi:10.1007/s11222-016-9639-0> and Y., and R. (2002) at <doi:10.1198/016214502388618861> for more details.
License: GPL-2
Encoding: UTF-8
Depends: R (>= 3.6.0)
Imports: mgcv, stats, minpack.lm
LazyData: true
NeedsCompilation: no
Packaged: 2021-12-01 14:40:06 UTC; tianhaizu
Author: Tianhai Zu [aut, trl, cre], Yan Yu [aut]
Maintainer: Tianhai Zu <zuti@mail.uc.edu>
Repository: CRAN
Date/Publication: 2021-12-02 08:30:02 UTC

More information about gplsim at CRAN
Permanent link

New package easyDifferentialGeneCoexpression with initial version 0.7
Encoding: UTF-8
Package: easyDifferentialGeneCoexpression
Title: Easily Computes the Differential Coexpression Analysis
Version: 0.7
Description: A function that reads in the GEO code of a list of probesets or gene symbols, a gene expression dataset GEO accession code, the name of the dataset feature discriminating the two conditions for the differential coexpression, and the values of the two different conditions for the differential coexpression. If the input gene list is made of gene symbols, this package associates the probesets to these gene symbols, if found. Platforms available: GPL80, GPL8300, GPL80, GPL96, GPL570, GPL571, GPL20115, GPL1293, GPL6102, GPL6104, GPL6883, GPL6884, GPL13497, GPL14550, GPL17077, GPL6480. GEO: Gene Expression Omnibus. ID: identifier code. The GEO datasets are downloaded from the URL <https://ftp.ncbi.nlm.nih.gov/geo/series/>.
BugReports: https://github.com/davidechicco/easyDifferentialGeneCoexpression/issues
Depends: R (>= 4.0.0)
License: GPL-3
URL: https://github.com/davidechicco/easyDifferentialGeneCoexpression
Imports: WGCNA, Matrix, Biobase, GEOquery, diffcoexp, annotate, easypackages, geneExpressionFromGEO, dplyr, jetset, markdown, R.utils, magrittr, xml2
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2021-12-01 14:34:42 UTC; dave
Author: Davide Chicco [aut, cre] (<https://orcid.org/0000-0001-9655-7142>)
Maintainer: Davide Chicco <davidechicco@davidechicco.it>
Repository: CRAN
Date/Publication: 2021-12-02 08:30:05 UTC

More information about easyDifferentialGeneCoexpression at CRAN
Permanent link

Package autostsm updated to version 2.1 with previous version 2.0 dated 2021-11-08

Title: Automatic Structural Time Series Models
Description: Automatic model selection for structural time series decomposition into trend, cycle, and seasonal components, plus optionality for structural interpolation, using the Kalman filter. Koopman, Siem Jan and Marius Ooms (2012) "Forecasting Economic Time Series Using Unobserved Components Time Series Models" <doi:10.1093/oxfordhb/9780195398649.013.0006>. Kim, Chang-Jin and Charles R. Nelson (1999) "State-Space Models with Regime Switching: Classical and Gibbs-Sampling Approaches with Applications" <doi:10.7551/mitpress/6444.001.0001><http://econ.korea.ac.kr/~cjkim/>.
Author: Alex Hubbard
Maintainer: Alex Hubbard <hubbard.alex@gmail.com>

Diff between autostsm versions 2.0 dated 2021-11-08 and 2.1 dated 2021-12-02

 DESCRIPTION                     |   11 
 MD5                             |   44 ++-
 R/data.R                        |    7 
 R/stsm_detect_cycle.R           |   16 -
 R/stsm_detect_multiplicative.R  |    6 
 R/stsm_detect_seasonality.R     |   26 +-
 R/stsm_detect_trend.R           |   81 ++++++-
 R/stsm_estimate.R               |  134 ++++++++---
 R/stsm_forecast.R               |  100 ++++----
 R/stsm_init_pars.R              |   64 +++--
 R/stsm_na_kalman.R              |    3 
 R/stsm_ssm.R                    |   11 
 data/DGS5.RData                 |only
 inst/doc/autostsm_vignette.R    |  150 +++++++++++++
 inst/doc/autostsm_vignette.Rmd  |  162 +++++++++++++-
 inst/doc/autostsm_vignette.html |  454 ++++++++++++++++++++++++++--------------
 man/DGS5.Rd                     |only
 man/stsm_detect_cycle.Rd        |    3 
 man/stsm_detect_seasonality.Rd  |    3 
 man/stsm_detect_trend.Rd        |  109 +++++----
 man/stsm_estimate.Rd            |   35 ++-
 man/stsm_forecast.Rd            |    3 
 man/stsm_init_pars.Rd           |    9 
 vignettes/autostsm_vignette.Rmd |  162 +++++++++++++-
 24 files changed, 1209 insertions(+), 384 deletions(-)

More information about autostsm at CRAN
Permanent link

Package asteRisk updated to version 1.2.0 with previous version 1.1.0 dated 2021-07-05

Title: Computation of Satellite Position
Description: Provides basic functionalities to calculate the position of satellites given a known state vector. The package includes implementations of the SGP4 and SDP4 simplified perturbation models to propagate orbital state vectors, as well as utilities to read TLE files and convert coordinates between different frames of reference. Several of the functionalities of the package (including the high-precision numerical orbit propagator) require the coefficients and data included in the 'asteRiskData' package, available in a 'drat' repository. To install this data package, run 'install.packages("asteRiskData", repos="https://rafael-ayala.github.io/drat/")'. Felix R. Hoots, Ronald L. Roehrich and T.S. Kelso (1988) <https://celestrak.com/NORAD/documentation/spacetrk.pdf>. David Vallado, Paul Crawford, Richard Hujsak and T.S. Kelso (2012) <doi:10.2514/6.2006-6753>. Felix R. Hoots, Paul W. Schumacher Jr. and Robert A. Glover (2014) <doi:10.2514/1.9161>.
Author: Rafael Ayala [aut, cre] (<https://orcid.org/0000-0002-9332-4623>), Daniel Ayala [aut] (<https://orcid.org/0000-0003-2095-1009>), David Ruiz [aut] (<https://orcid.org/0000-0003-4460-5493>), Lara Selles Vidal [aut] (<https://orcid.org/0000-0003-2537-6824>)
Maintainer: Rafael Ayala <rafael.ayala@oist.jp>

Diff between asteRisk versions 1.1.0 dated 2021-07-05 and 1.2.0 dated 2021-12-02

 asteRisk-1.1.0/asteRisk/R/hpopConstants.R                                 |only
 asteRisk-1.1.0/asteRisk/R/radau_tests.R                                   |only
 asteRisk-1.1.0/asteRisk/man/ECEFtoGCRF.Rd                                 |only
 asteRisk-1.1.0/asteRisk/man/ECEFtoLATLON.Rd                               |only
 asteRisk-1.1.0/asteRisk/man/GCRFtoECEF.Rd                                 |only
 asteRisk-1.1.0/asteRisk/man/TEMEtoECEF.Rd                                 |only
 asteRisk-1.2.0/asteRisk/DESCRIPTION                                       |    8 
 asteRisk-1.2.0/asteRisk/MD5                                               |   70 
 asteRisk-1.2.0/asteRisk/NAMESPACE                                         |   11 
 asteRisk-1.2.0/asteRisk/NEWS                                              |   13 
 asteRisk-1.2.0/asteRisk/R/SOFAfunctions.R                                 |  171 --
 asteRisk-1.2.0/asteRisk/R/auxiliaryFunctions.R                            |   21 
 asteRisk-1.2.0/asteRisk/R/constants.R                                     |  159 --
 asteRisk-1.2.0/asteRisk/R/coordinatesTransformations.R                    |  108 -
 asteRisk-1.2.0/asteRisk/R/coordinatesTransformations_auxiliaryFunctions.R |only
 asteRisk-1.2.0/asteRisk/R/fileParsers.R                                   |  253 ++-
 asteRisk-1.2.0/asteRisk/R/hpop.R                                          |    5 
 asteRisk-1.2.0/asteRisk/R/hpop_acceleration.R                             |  164 --
 asteRisk-1.2.0/asteRisk/R/hpop_auxiliaryFunctions.R                       |   85 -
 asteRisk-1.2.0/asteRisk/R/models.R                                        |  114 -
 asteRisk-1.2.0/asteRisk/R/nrlmsise00_model.R                              |  124 +
 asteRisk-1.2.0/asteRisk/build/vignette.rds                                |binary
 asteRisk-1.2.0/asteRisk/inst/SGP4-VER.TLE                                 |only
 asteRisk-1.2.0/asteRisk/inst/doc/asteRisk.R                               |   90 -
 asteRisk-1.2.0/asteRisk/inst/doc/asteRisk.Rmd                             |   41 
 asteRisk-1.2.0/asteRisk/inst/doc/asteRisk.html                            |  780 +++++-----
 asteRisk-1.2.0/asteRisk/inst/unitTests/test_all.R                         |   49 
 asteRisk-1.2.0/asteRisk/man/GCRFtoITRF.Rd                                 |only
 asteRisk-1.2.0/asteRisk/man/GCRFtoLATLON.Rd                               |    2 
 asteRisk-1.2.0/asteRisk/man/ITRFtoGCRF.Rd                                 |only
 asteRisk-1.2.0/asteRisk/man/ITRFtoLATLON.Rd                               |only
 asteRisk-1.2.0/asteRisk/man/LATLONtoGCRF.Rd                               |only
 asteRisk-1.2.0/asteRisk/man/LATLONtoITRF.Rd                               |only
 asteRisk-1.2.0/asteRisk/man/TEMEtoITRF.Rd                                 |only
 asteRisk-1.2.0/asteRisk/man/TEMEtoLATLON.Rd                               |    4 
 asteRisk-1.2.0/asteRisk/man/hpop.Rd                                       |   15 
 asteRisk-1.2.0/asteRisk/man/readGLONASSNavigationRINEX.Rd                 |   34 
 asteRisk-1.2.0/asteRisk/man/readGPSNavigationRINEX.Rd                     |   90 -
 asteRisk-1.2.0/asteRisk/man/sdp4.Rd                                       |    2 
 asteRisk-1.2.0/asteRisk/man/sgdp4.Rd                                      |    2 
 asteRisk-1.2.0/asteRisk/man/sgp4.Rd                                       |    2 
 asteRisk-1.2.0/asteRisk/vignettes/asteRisk.Rmd                            |   41 
 asteRisk-1.2.0/asteRisk/vignettes/figures                                 |only
 43 files changed, 1322 insertions(+), 1136 deletions(-)

More information about asteRisk at CRAN
Permanent link

Package uwot updated to version 0.1.11 with previous version 0.1.10 dated 2020-12-15

Title: The Uniform Manifold Approximation and Projection (UMAP) Method for Dimensionality Reduction
Description: An implementation of the Uniform Manifold Approximation and Projection dimensionality reduction by McInnes et al. (2018) <arXiv:1802.03426>. It also provides means to transform new data and to carry out supervised dimensionality reduction. An implementation of the related LargeVis method of Tang et al. (2016) <arXiv:1602.00370> is also provided. This is a complete re-implementation in R (and C++, via the 'Rcpp' package): no Python installation is required. See the uwot website (<https://github.com/jlmelville/uwot>) for more documentation and examples.
Author: James Melville [aut, cre], Aaron Lun [ctb], Mohamed Nadhir Djekidel [ctb], Yuhan Hao [ctb]
Maintainer: James Melville <jlmelville@gmail.com>

Diff between uwot versions 0.1.10 dated 2020-12-15 and 0.1.11 dated 2021-12-02

 uwot-0.1.10/uwot/src/optimize.cpp                    |only
 uwot-0.1.11/uwot/DESCRIPTION                         |   11 
 uwot-0.1.11/uwot/MD5                                 |   73 -
 uwot-0.1.11/uwot/NAMESPACE                           |   26 
 uwot-0.1.11/uwot/NEWS.md                             |   74 +
 uwot-0.1.11/uwot/R/RcppExports.R                     |   16 
 uwot-0.1.11/uwot/R/affinity.R                        |  306 ++---
 uwot-0.1.11/uwot/R/bigstatsr_init.R                  |only
 uwot-0.1.11/uwot/R/init.R                            |  386 ++++--
 uwot-0.1.11/uwot/R/neighbors.R                       |    8 
 uwot-0.1.11/uwot/R/rspectra_init.R                   |only
 uwot-0.1.11/uwot/R/transform.R                       |  284 +++--
 uwot-0.1.11/uwot/R/util.R                            |   53 
 uwot-0.1.11/uwot/R/uwot.R                            |  510 ++++++---
 uwot-0.1.11/uwot/inst/include/RcppPerpendicular.h    |  109 +
 uwot-0.1.11/uwot/inst/include/uwot/coords.h          |only
 uwot-0.1.11/uwot/inst/include/uwot/epoch.h           |only
 uwot-0.1.11/uwot/inst/include/uwot/gradient.h        |   61 +
 uwot-0.1.11/uwot/inst/include/uwot/optimize.h        |  178 +--
 uwot-0.1.11/uwot/inst/include/uwot/sampler.h         |   26 
 uwot-0.1.11/uwot/inst/include/uwot/tauprng.h         |    6 
 uwot-0.1.11/uwot/inst/include/uwot/update.h          |only
 uwot-0.1.11/uwot/man/load_uwot.Rd                    |  128 +-
 uwot-0.1.11/uwot/man/lvish.Rd                        |  815 +++++++-------
 uwot-0.1.11/uwot/man/save_uwot.Rd                    |  154 +-
 uwot-0.1.11/uwot/man/tumap.Rd                        |  913 ++++++++--------
 uwot-0.1.11/uwot/man/umap.Rd                         | 1075 ++++++++++---------
 uwot-0.1.11/uwot/man/umap_transform.Rd               |  313 +++--
 uwot-0.1.11/uwot/src/RcppExports.cpp                 |   95 -
 uwot-0.1.11/uwot/src/nn_parallel.h                   |    9 
 uwot-0.1.11/uwot/src/r_uwot.cpp                      |only
 uwot-0.1.11/uwot/src/rng.h                           |   80 +
 uwot-0.1.11/uwot/src/rparallel.h                     |only
 uwot-0.1.11/uwot/src/rprogress.h                     |only
 uwot-0.1.11/uwot/tests/testthat.R                    |    8 
 uwot-0.1.11/uwot/tests/testthat/helper_data.R        |    2 
 uwot-0.1.11/uwot/tests/testthat/test_errors.R        |    3 
 uwot-0.1.11/uwot/tests/testthat/test_normlaplacian.R |only
 uwot-0.1.11/uwot/tests/testthat/test_optonly.R       |only
 uwot-0.1.11/uwot/tests/testthat/test_output.R        |   75 +
 uwot-0.1.11/uwot/tests/testthat/test_pca.R           |  111 +
 uwot-0.1.11/uwot/tests/testthat/test_spectral.R      |  135 --
 uwot-0.1.11/uwot/tests/testthat/test_transform.R     |   27 
 43 files changed, 3570 insertions(+), 2500 deletions(-)

More information about uwot at CRAN
Permanent link

Package GUTS updated to version 1.2 with previous version 1.1.1 dated 2019-07-05

Title: Fast Calculation of the Likelihood of a Stochastic Survival Model
Description: Given exposure and survival time series as well as parameter values, GUTS allows for the fast calculation of the survival probabilities as well as the logarithm of the corresponding likelihood.
Author: Carlo Albert <carlo.albert@eawag.ch>, Sören Vogel <soeren.vogel@posteo.ch>, Oliver Jakoby <oliver.jakoby@rifcon.de>, Alexander Singer <alexander.singer@rifcon.de> and Dirk Nickisch <dirk.nickisch@rifcon.de>
Maintainer: Oliver Jakoby <oliver.jakoby@rifcon.de>

Diff between GUTS versions 1.1.1 dated 2019-07-05 and 1.2 dated 2021-12-02

 GUTS-1.1.1/GUTS/src/guts_engine.cpp                                   |only
 GUTS-1.1.1/GUTS/src/init.c                                            |only
 GUTS-1.2/GUTS/DESCRIPTION                                             |   16 
 GUTS-1.2/GUTS/MD5                                                     |   73 -
 GUTS-1.2/GUTS/NAMESPACE                                               |    3 
 GUTS-1.2/GUTS/R/GUTS.R                                                |  412 +++---
 GUTS-1.2/GUTS/build/partial.rdb                                       |only
 GUTS-1.2/GUTS/build/vignette.rds                                      |binary
 GUTS-1.2/GUTS/data/diazinon.rda                                       |binary
 GUTS-1.2/GUTS/inst/doc/GUTS-proper.R                                  |   34 
 GUTS-1.2/GUTS/inst/doc/GUTS-proper.Rmd                                |   10 
 GUTS-1.2/GUTS/inst/doc/GUTS-proper.html                               |  498 ++++---
 GUTS-1.2/GUTS/inst/doc/ringTest.R                                     |   88 -
 GUTS-1.2/GUTS/inst/doc/ringTest.Rmd                                   |   48 
 GUTS-1.2/GUTS/inst/doc/ringTest.html                                  |  660 +++++-----
 GUTS-1.2/GUTS/inst/extdata/vignetteGUTS-Proper-MCMCresults.Rdata      |binary
 GUTS-1.2/GUTS/inst/extdata/vignetteGUTS-Proper-forecast.Rdata         |binary
 GUTS-1.2/GUTS/inst/extdata/vignetteGUTS-Proper-initialValues.Rdata    |binary
 GUTS-1.2/GUTS/inst/extdata/vignetteGUTS-ringTest-IT-MCMCresults.Rdata |binary
 GUTS-1.2/GUTS/inst/extdata/vignetteGUTS-ringTest-SD-MCMCresults.Rdata |binary
 GUTS-1.2/GUTS/inst/extdata/vignetteGUTS-ringTest-forecast.Rdata       |binary
 GUTS-1.2/GUTS/inst/extdata/vignetteGUTS-ringTest-logLC50.Rdata        |binary
 GUTS-1.2/GUTS/man/GUTS-package.Rd                                     |    8 
 GUTS-1.2/GUTS/man/GUTS.Rd                                             |   59 
 GUTS-1.2/GUTS/man/diazinon.Rd                                         |    2 
 GUTS-1.2/GUTS/src/GUTS_RED.h                                          |only
 GUTS-1.2/GUTS/src/GUTS_base.h                                         |only
 GUTS-1.2/GUTS/src/RcppExports.cpp                                     |   10 
 GUTS-1.2/GUTS/src/Rcpp_GUTS_RED_interface.cpp                         |only
 GUTS-1.2/GUTS/src/TD.h                                                |only
 GUTS-1.2/GUTS/src/TD_IT.h                                             |only
 GUTS-1.2/GUTS/src/TD_SD.h                                             |only
 GUTS-1.2/GUTS/src/TD_base.h                                           |only
 GUTS-1.2/GUTS/src/TD_proper.h                                         |only
 GUTS-1.2/GUTS/src/TK_RED.h                                            |only
 GUTS-1.2/GUTS/src/TK_base.h                                           |only
 GUTS-1.2/GUTS/src/TK_single_concentration.h                           |only
 GUTS-1.2/GUTS/src/external_data.h                                     |only
 GUTS-1.2/GUTS/src/external_data_def_and_checks.h                      |only
 GUTS-1.2/GUTS/src/helpers.h                                           |only
 GUTS-1.2/GUTS/src/random_distributions.h                              |only
 GUTS-1.2/GUTS/src/samplers.cpp                                        |only
 GUTS-1.2/GUTS/src/samplers.h                                          |only
 GUTS-1.2/GUTS/tests                                                   |only
 GUTS-1.2/GUTS/vignettes/GUTS-proper.Rmd                               |   10 
 GUTS-1.2/GUTS/vignettes/ringTest.Rmd                                  |   48 
 46 files changed, 1074 insertions(+), 905 deletions(-)

More information about GUTS at CRAN
Permanent link

Package gridpattern updated to version 0.3.1 with previous version 0.2.1 dated 2021-07-17

Title: 'grid' Pattern Grobs
Description: Provides 'grid' grobs that fill in a user-defined area with various patterns. Includes enhanced versions of the geometric and image-based patterns originally contained in the 'ggpattern' package as well as original 'pch', 'polygon_tiling', 'regular_polygon', 'rose', 'text', 'wave', and 'weave' patterns plus support for custom user-defined patterns.
Author: Mike FC [aut] (Code/docs adapted from ggpattern), Trevor L Davis [aut, cre], Thomas Lin Pedersen [ctb] (new_data_frame() copied from ggplot2)
Maintainer: Trevor L Davis <trevor.l.davis@gmail.com>

Diff between gridpattern versions 0.2.1 dated 2021-07-17 and 0.3.1 dated 2021-12-02

 DESCRIPTION                                      |   16 
 LICENSE                                          |    6 
 MD5                                              |  132 ++--
 NEWS.md                                          |   71 ++
 R/clippingPathGrob.R                             |    2 
 R/grid-pattern.R                                 |   31 
 R/gridpattern-package.R                          |    1 
 R/pattern-array-ambient.R                        |    8 
 R/pattern-array-image.R                          |   28 
 R/pattern-array-magick.R                         |   19 
 R/pattern-array-placeholder.R                    |   17 
 R/pattern-array-plasma.R                         |   17 
 R/pattern-both-gradient.R                        |   42 -
 R/pattern-both-rose.R                            |    2 
 R/pattern-both-text.R                            |    2 
 R/pattern-geometry-circle.R                      |    3 
 R/pattern-geometry-crosshatch.R                  |    5 
 R/pattern-geometry-regular_polygon.R             |   35 -
 R/pattern-geometry-stripe.R                      |    4 
 R/pattern-geometry-tiling.R                      |  716 +++++++++++++++++++++--
 R/pattern-geometry-wave.R                        |    1 
 R/pattern_square.R                               |   24 
 R/star_scale.R                                   |   21 
 R/utils-geometry.R                               |   33 +
 R/utils-magick-misc.R                            |    7 
 R/utils-misc.R                                   |only
 R/utils-params.R                                 |    2 
 R/utils-polygon_df.R                             |   27 
 README.md                                        |    6 
 build/vignette.rds                               |binary
 inst/doc/developing-patterns.R                   |only
 inst/doc/developing-patterns.Rmd                 |only
 inst/doc/developing-patterns.html                |only
 inst/doc/tiling.R                                |  194 +++++-
 inst/doc/tiling.Rmd                              |  204 +++++-
 inst/doc/tiling.html                             |  447 +++++++++-----
 man/clippingPathGrob.Rd                          |    2 
 man/grid.pattern.Rd                              |   31 
 man/grid.pattern_ambient.Rd                      |    5 
 man/grid.pattern_circle.Rd                       |    3 
 man/grid.pattern_crosshatch.Rd                   |    5 
 man/grid.pattern_gradient.Rd                     |    7 
 man/grid.pattern_image.Rd                        |   27 
 man/grid.pattern_magick.Rd                       |   16 
 man/grid.pattern_placeholder.Rd                  |   15 
 man/grid.pattern_plasma.Rd                       |   12 
 man/grid.pattern_polygon_tiling.Rd               |   62 +
 man/grid.pattern_regular_polygon.Rd              |   19 
 man/grid.pattern_rose.Rd                         |    2 
 man/grid.pattern_stripe.Rd                       |    4 
 man/grid.pattern_text.Rd                         |    2 
 man/grid.pattern_wave.Rd                         |    3 
 man/gridpattern-package.Rd                       |    5 
 tests/testthat/_snaps/tiling/12-12-4.svg         |only
 tests/testthat/_snaps/tiling/12-3-12-3.svg       |only
 tests/testthat/_snaps/tiling/18-18-3.svg         |only
 tests/testthat/_snaps/tiling/2-2-2-2.svg         |only
 tests/testthat/_snaps/tiling/2-3-12.svg          |only
 tests/testthat/_snaps/tiling/3-3-3-12-3-3-12.svg |only
 tests/testthat/_snaps/tiling/3-3-3-3-alt.svg     |only
 tests/testthat/_snaps/tiling/3-3-3-3.svg         |only
 tests/testthat/_snaps/tiling/3-3-8-3-4-3-8.svg   |only
 tests/testthat/_snaps/tiling/3-3-8-4-8.svg       |only
 tests/testthat/_snaps/tiling/3-4-6-3-12.svg      |only
 tests/testthat/_snaps/tiling/3-4-8-3-8.svg       |only
 tests/testthat/_snaps/tiling/3-6-6.svg           |only
 tests/testthat/_snaps/tiling/4-2-4-2.svg         |only
 tests/testthat/_snaps/tiling/4-4-4.svg           |only
 tests/testthat/_snaps/tiling/4-6-4-6-4-6.svg     |only
 tests/testthat/_snaps/tiling/4-6-4-6.svg         |only
 tests/testthat/_snaps/tiling/4-8-4-8.svg         |only
 tests/testthat/_snaps/tiling/6-6-6-6.svg         |only
 tests/testthat/_snaps/tiling/8-4-8-4.svg         |only
 tests/testthat/_snaps/tiling/9-3-9-3.svg         |only
 tests/testthat/_snaps/tiling/rhombille.svg       |only
 tests/testthat/_snaps/tiling/tetrakis-square.svg |only
 tests/testthat/test_tiling.R                     |   46 +
 tests/testthat/test_utils.R                      |    7 
 tests/text_diagrams/vertical.txt                 |   14 
 vignettes/developing-patterns.Rmd                |only
 vignettes/tiling.Rmd                             |  204 +++++-
 81 files changed, 2026 insertions(+), 588 deletions(-)

More information about gridpattern at CRAN
Permanent link

Package rdrobust updated to version 1.0.8 with previous version 1.0.7 dated 2021-11-05

Title: Robust Data-Driven Statistical Inference in Regression-Discontinuity Designs
Description: Regression-discontinuity (RD) designs are quasi-experimental research designs popular in social, behavioral and natural sciences. The RD design is usually employed to study the (local) causal effect of a treatment, intervention or policy. This package provides tools for data-driven graphical and analytical statistical inference in RD designs: rdrobust() to construct local-polynomial point estimators and robust confidence intervals for average treatment effects at the cutoff in Sharp, Fuzzy and Kink RD settings, rdbwselect() to perform bandwidth selection for the different procedures implemented, and rdplot() to conduct exploratory data analysis (RD plots).
Author: Sebastian Calonico <sebastian.calonico@columbia.edu>, Matias D. Cattaneo <cattaneo@princeton.edu>, Max H. Farrell <max.farrell@chicagobooth.edu>, Rocio Titiunik <titiunik@princeton.edu>
Maintainer: Sebastian Calonico <sebastian.calonico@columbia.edu>

Diff between rdrobust versions 1.0.7 dated 2021-11-05 and 1.0.8 dated 2021-12-02

 DESCRIPTION             |    8 ++++----
 MD5                     |    8 ++++----
 R/rdbwselect.R          |    1 +
 R/rdrobust.R            |    2 ++
 man/rdrobust-package.Rd |    4 ++--
 5 files changed, 13 insertions(+), 10 deletions(-)

More information about rdrobust at CRAN
Permanent link

Package migest updated to version 2.0.2 with previous version 2.0.1 dated 2021-10-30

Title: Methods for the Indirect Estimation of Bilateral Migration
Description: Tools for estimating, measuring and working with migration data.
Author: Guy J. Abel [aut, cre] (<https://orcid.org/0000-0002-4893-5687>)
Maintainer: Guy J. Abel <g.j.abel@gmail.com>

Diff between migest versions 2.0.1 dated 2021-10-30 and 2.0.2 dated 2021-12-02

 DESCRIPTION          |    6 +++---
 MD5                  |   26 +++++++++++++-------------
 NAMESPACE            |    3 +++
 NEWS.md              |    9 +++++++--
 R/birth_mat.R        |   20 +++++++++++++-------
 R/death_mat.R        |    6 +++---
 R/ffs_demo.R         |    9 ++++++++-
 R/sum_bilateral.R    |    7 ++++++-
 R/sum_region.R       |   39 +++++++++++++++++++++++----------------
 man/birth_mat.Rd     |    4 +++-
 man/death_mat.Rd     |    6 +++---
 man/ffs_demo.Rd      |    3 +++
 man/sum_bilateral.Rd |    9 +++++++++
 man/sum_region.Rd    |   35 ++++++++++++++++++++++++-----------
 14 files changed, 121 insertions(+), 61 deletions(-)

More information about migest at CRAN
Permanent link

Package imputeMulti updated to version 0.8.3 with previous version 0.6.4 dated 2017-02-12

Title: Imputation Methods for Multivariate Multinomial Data
Description: Implements imputation methods using EM and Data Augmentation for multinomial data following the work of Schafer 1997 <ISBN: 978-0-412-04061-0>.
Author: Alex Whitworth [aut, cre]
Maintainer: Alex Whitworth <whitworth.alex@gmail.com>

Diff between imputeMulti versions 0.6.4 dated 2017-02-12 and 0.8.3 dated 2021-12-02

 imputeMulti-0.6.4/imputeMulti/tests/testthat/test-supDist_marg_comp.R   |only
 imputeMulti-0.8.3/imputeMulti/DESCRIPTION                               |   28 
 imputeMulti-0.8.3/imputeMulti/MD5                                       |   85 +-
 imputeMulti-0.8.3/imputeMulti/NAMESPACE                                 |   49 -
 imputeMulti-0.8.3/imputeMulti/R/RcppExports.R                           |   40 -
 imputeMulti-0.8.3/imputeMulti/R/class_imputeMulti.R                     |  220 +++---
 imputeMulti-0.8.3/imputeMulti/R/data_dep_prior_multi.R                  |  173 ++---
 imputeMulti-0.8.3/imputeMulti/R/imputeMulti-package.R                   |only
 imputeMulti-0.8.3/imputeMulti/R/int-count_levels.R                      |  213 +++---
 imputeMulti-0.8.3/imputeMulti/R/int-impute_multinomial.R                |   71 +-
 imputeMulti-0.8.3/imputeMulti/R/int-search_z_Os_y.R                     |  120 ---
 imputeMulti-0.8.3/imputeMulti/R/multinomial_data_aug.R                  |  286 ++++----
 imputeMulti-0.8.3/imputeMulti/R/multinomial_em.R                        |  328 ++++-----
 imputeMulti-0.8.3/imputeMulti/R/multinomial_impute.R                    |  336 ++++------
 imputeMulti-0.8.3/imputeMulti/R/multinomial_stats.R                     |  109 +--
 imputeMulti-0.8.3/imputeMulti/build                                     |only
 imputeMulti-0.8.3/imputeMulti/inst                                      |only
 imputeMulti-0.8.3/imputeMulti/man/data_dep_prior_multi.Rd               |   53 -
 imputeMulti-0.8.3/imputeMulti/man/imputeMulti-class.Rd                  |  125 +--
 imputeMulti-0.8.3/imputeMulti/man/is.imputeMulti.Rd                     |   37 -
 imputeMulti-0.8.3/imputeMulti/man/is.mod_imputeMulti.Rd                 |   37 -
 imputeMulti-0.8.3/imputeMulti/man/merge_imputed.Rd                      |   39 -
 imputeMulti-0.8.3/imputeMulti/man/mod_imputeMulti-class.Rd              |  163 ++--
 imputeMulti-0.8.3/imputeMulti/man/multinomial_data_aug.Rd               |  118 +--
 imputeMulti-0.8.3/imputeMulti/man/multinomial_em.Rd                     |  121 +--
 imputeMulti-0.8.3/imputeMulti/man/multinomial_impute.Rd                 |  106 +--
 imputeMulti-0.8.3/imputeMulti/man/multinomial_stats.Rd                  |   61 -
 imputeMulti-0.8.3/imputeMulti/man/summary-imputeMulti-method.Rd         |   34 -
 imputeMulti-0.8.3/imputeMulti/man/summary-mod_imputeMulti-method.Rd     |   34 -
 imputeMulti-0.8.3/imputeMulti/man/supDistC.Rd                           |only
 imputeMulti-0.8.3/imputeMulti/man/tract2221.Rd                          |   97 +-
 imputeMulti-0.8.3/imputeMulti/src/RcppExports.cpp                       |   29 
 imputeMulti-0.8.3/imputeMulti/src/count_compare.cpp                     |   26 
 imputeMulti-0.8.3/imputeMulti/src/utilities_rcpp.cpp                    |   86 --
 imputeMulti-0.8.3/imputeMulti/tests/testdata                            |only
 imputeMulti-0.8.3/imputeMulti/tests/testthat.R                          |   21 
 imputeMulti-0.8.3/imputeMulti/tests/testthat/setup-testdata.R           |only
 imputeMulti-0.8.3/imputeMulti/tests/testthat/test-classes.R             |  206 +++---
 imputeMulti-0.8.3/imputeMulti/tests/testthat/test-count_levels.R        |  224 ++----
 imputeMulti-0.8.3/imputeMulti/tests/testthat/test-impute_observations.R |   95 +-
 imputeMulti-0.8.3/imputeMulti/tests/testthat/test-multinomial_da.R      |  143 +---
 imputeMulti-0.8.3/imputeMulti/tests/testthat/test-multinomial_em.R      |  151 +---
 imputeMulti-0.8.3/imputeMulti/tests/testthat/test-search_z_Os_y.R       |   70 --
 imputeMulti-0.8.3/imputeMulti/tests/testthat/test-supDist_xy_compare.R  |only
 imputeMulti-0.8.3/imputeMulti/vignettes                                 |only
 45 files changed, 1955 insertions(+), 2179 deletions(-)

More information about imputeMulti at CRAN
Permanent link

Package drat updated to version 0.2.2 with previous version 0.2.1 dated 2021-07-10

Title: 'Drat' R Archive Template
Description: Creation and use of R Repositories via helper functions to insert packages into a repository, and to add repository information to the current R session. Two primary types of repositories are support: gh-pages at GitHub, as well as local repositories on either the same machine or a local network. Drat is a recursive acronym: Drat R Archive Template.
Author: Dirk Eddelbuettel with contributions by Carl Boettiger, Neal Fultz, Sebastian Gibb, Colin Gillespie, Jan Górecki, Matt Jones, Thomas Leeper, Steven Pav, Jan Schulz, Christoph Stepper, Felix G.M. Ernst and Patrick Schratz.
Maintainer: Dirk Eddelbuettel <edd@debian.org>

Diff between drat versions 0.2.1 dated 2021-07-10 and 0.2.2 dated 2021-12-02

 drat-0.2.1/drat/inst/doc/CombiningDratAndTravis.Rmd  |only
 drat-0.2.1/drat/inst/doc/DratFAQ.Rmd                 |only
 drat-0.2.1/drat/inst/doc/DratForPackageAuthors.R     |only
 drat-0.2.1/drat/inst/doc/DratForPackageAuthors.Rmd   |only
 drat-0.2.1/drat/inst/doc/DratForPackageUsers.R       |only
 drat-0.2.1/drat/inst/doc/DratForPackageUsers.Rmd     |only
 drat-0.2.1/drat/inst/doc/DratStepByStep.Rmd          |only
 drat-0.2.1/drat/inst/doc/WhyDrat.R                   |only
 drat-0.2.1/drat/inst/doc/WhyDrat.Rmd                 |only
 drat-0.2.1/drat/vignettes/CombiningDratAndTravis.Rmd |only
 drat-0.2.1/drat/vignettes/DratFAQ.Rmd                |only
 drat-0.2.1/drat/vignettes/DratForPackageAuthors.Rmd  |only
 drat-0.2.1/drat/vignettes/DratForPackageUsers.Rmd    |only
 drat-0.2.1/drat/vignettes/DratStepByStep.Rmd         |only
 drat-0.2.1/drat/vignettes/WhyDrat.Rmd                |only
 drat-0.2.2/drat/ChangeLog                            |   21 +
 drat-0.2.2/drat/DESCRIPTION                          |   12 
 drat-0.2.2/drat/MD5                                  |   50 +-
 drat-0.2.2/drat/README.md                            |    1 
 drat-0.2.2/drat/build/vignette.rds                   |binary
 drat-0.2.2/drat/inst/NEWS.Rd                         |    7 
 drat-0.2.2/drat/inst/doc/CombiningDratAndTravis.html |  271 +++++++++++-----
 drat-0.2.2/drat/inst/doc/CombiningDratAndTravis.md   |only
 drat-0.2.2/drat/inst/doc/DratFAQ.html                |  321 ++++++++++---------
 drat-0.2.2/drat/inst/doc/DratFAQ.md                  |only
 drat-0.2.2/drat/inst/doc/DratForPackageAuthors.html  |  308 +++++++++---------
 drat-0.2.2/drat/inst/doc/DratForPackageAuthors.md    |only
 drat-0.2.2/drat/inst/doc/DratForPackageUsers.html    |  276 +++++++++-------
 drat-0.2.2/drat/inst/doc/DratForPackageUsers.md      |only
 drat-0.2.2/drat/inst/doc/DratStepByStep.html         |  262 ++++++++++-----
 drat-0.2.2/drat/inst/doc/DratStepByStep.md           |only
 drat-0.2.2/drat/inst/doc/WhyDrat.html                |  267 +++++++++------
 drat-0.2.2/drat/inst/doc/WhyDrat.md                  |only
 drat-0.2.2/drat/vignettes/CombiningDratAndTravis.md  |only
 drat-0.2.2/drat/vignettes/DratFAQ.md                 |only
 drat-0.2.2/drat/vignettes/DratForPackageAuthors.md   |only
 drat-0.2.2/drat/vignettes/DratForPackageUsers.md     |only
 drat-0.2.2/drat/vignettes/DratStepByStep.md          |only
 drat-0.2.2/drat/vignettes/WhyDrat.md                 |only
 drat-0.2.2/drat/vignettes/water.css                  |only
 40 files changed, 1072 insertions(+), 724 deletions(-)

More information about drat at CRAN
Permanent link


Built and running on Debian GNU/Linux using R, littler and blosxom. Styled with Bootstrap.