Title: Create Visual Citations to Include in Presentations
Description: Provides 'visual citations' containing the metadata of a scientific paper and a 'QR' code.
A 'visual citation' is a banner containing title, authors, journal and year of a publication.
This package can create such banners based on 'BibTeX' and 'BibLaTeX' references
and includes a QR code pointing to the 'DOI'.
The resulting HTML object or PNG image can be included in a presentation to point the audience to good resources for further reading.
Styling is possible via predefined designs or via custom 'CSS'.
This package is not intended as replacement for proper reference manager packages,
but a tool to enrich scientific presentation slides.
Author: Christian A. Gebhard [aut, cre]
(<https://orcid.org/0000-0002-8792-565X>)
Maintainer: Christian A. Gebhard <christian.gebhard@posteo.de>
Diff between namedropR versions 2.1.1 dated 2022-01-18 and 2.2.1 dated 2022-01-26
DESCRIPTION | 9 - MD5 | 38 ++--- NAMESPACE | 2 NEWS.md | 10 + R/drop_html.R | 25 ++- R/drop_name.R | 26 ++- R/get_css_styles.R | 51 +++--- README.md | 37 ++++- inst/doc/namedropR.R | 115 ++++++++++----- inst/doc/namedropR.Rmd | 182 +++++++++++++++--------- inst/doc/namedropR.html | 265 +++++++++++++++++++++--------------- inst/styles |only inst/testdata/extremes.bib |only man/drop_html.Rd | 15 +- man/drop_name.Rd | 17 +- man/figures/logo.png |only man/namedropR-package.Rd | 2 tests/testthat/aesthetic_tests.R | 17 ++ tests/testthat/test-drop_html.R | 24 +-- tests/testthat/test-get_css_style.R | 13 + vignettes/namedropR.Rmd | 182 +++++++++++++++--------- 21 files changed, 670 insertions(+), 360 deletions(-)
Title: Sparse Family and Selection Index
Description: Here we provide tools for the estimation of coefficients in
penalized regressions when the (co)variance matrix of predictors
and the covariance vector between predictors and response, are
provided. These methods are extended to the context of a Selection Index
(commonly used for breeding value prediction). The approaches offer
opportunities such as the integration of high-throughput traits in genetic
evaluations ('Lopez-Cruz et al., 2020') <doi:10.1038/s41598-020-65011-2>
and solutions for training set optimization in Genomic Prediction
('Lopez-Cruz & de los Campos, 2021') <doi:10.1093/genetics/iyab030>.
Author: Marco Lopez-Cruz [aut, cre],
Gustavo de los Campos [aut],
Paulino Perez-Rodriguez [ctb]
Maintainer: Marco Lopez-Cruz <maraloc@gmail.com>
Diff between SFSI versions 1.0.0 dated 2021-09-30 and 1.0.1 dated 2022-01-26
DESCRIPTION | 8 +++--- MD5 | 51 +++++++++++++++++++++++----------------- NEWS.md | 27 ++++++++++++++------- R/SSI.R | 25 ++++++++++++++----- R/SSI_CV.R | 16 +++++++----- R/fitBLUP.R | 32 +++++++++++++------------ R/rrr_functions.R | 42 ++++++++++++++++---------------- build/vignette.rds |binary demo/SSI.R | 18 +++++++++----- demo/SSI_CV.R | 4 +-- demo/fitBLUP.R | 3 +- inst/doc/PSI-documentation.Rmd | 4 +-- inst/doc/PSI-documentation.html | 4 +-- inst/doc/SSI-documentation.R | 5 ++- inst/doc/SSI-documentation.Rmd | 15 ++++++----- inst/doc/SSI-documentation.html | 15 ++++++----- man/SSI.Rd | 23 ++++++++++-------- man/fitBLUP.Rd | 9 +++---- src/c_utils.c | 4 +-- vignettes/Img1.png |only vignettes/Img2.png |only vignettes/Img3.png |only vignettes/Img4.png |only vignettes/Img5.png |only vignettes/Img6.png |only vignettes/Img7.png |only vignettes/Img8.png |only vignettes/Img9.png |only vignettes/PSI-documentation.Rmd | 4 +-- vignettes/SSI-documentation.Rmd | 15 ++++++----- vignettes/references.bib | 3 -- 31 files changed, 187 insertions(+), 140 deletions(-)
Title: Interface to OGC Web-Services (OWS)
Description: Provides an Interface to Web-Services defined as standards by the Open Geospatial Consortium (OGC), including Web Feature Service
(WFS) for vector data, Catalogue Service (CSW) for ISO/OGC metadata, and associated standards such as the common web-service specification (OWS) and
OGC Filter Encoding. Partial support is provided for the Web Map Service (WMS) and Web Processing Service (WPS). The purpose is to add support for
additional OGC service standards such as Web Coverage Service (WCS), Web Coverage Processing Service (WCPS) or OGC API.
Author: Emmanuel Blondel [aut, cre] (<https://orcid.org/0000-0002-5870-5762>),
Alexandre Bennici [ctb] (<https://orcid.org/0000-0003-2160-3487>),
Norbert Billet [ctb]
Maintainer: Emmanuel Blondel <emmanuel.blondel1@gmail.com>
Diff between ows4R versions 0.2 dated 2021-11-30 and 0.2-1 dated 2022-01-26
DESCRIPTION | 10 +++++----- MD5 | 20 ++++++++++---------- NAMESPACE | 1 + NEWS.md | 2 +- R/OGCAbstractObject.R | 20 ++++++++++++++------ R/OWSClient.R | 1 + R/ows4R.R | 4 ++-- README.md | 2 +- man/OGCAbstractObject.Rd | 8 ++++++-- man/ows4R.Rd | 4 ++-- tests/testthat/test_CSWClient_v2_0_2.R | 10 +++++----- 11 files changed, 48 insertions(+), 34 deletions(-)
Title: Accessing the 'CHILDES' Database
Description: Tools for connecting to 'CHILDES', an open repository for
transcripts of parent-child interaction. For more information on the
underlying data, see <https://langcog.github.io/childes-db-website/>.
Author: Mika Braginsky [aut, cre],
Alessandro Sanchez [aut, ctb],
Daniel Yurovsky [aut],
Kyle MacDonald [ctb],
Stephan Meylan [ctb],
Jessica Mankewitz [ctb]
Maintainer: Mika Braginsky <mika.br@gmail.com>
Diff between childesr versions 0.2.2 dated 2021-10-04 and 0.2.3 dated 2022-01-26
DESCRIPTION | 8 - MD5 | 10 - NEWS.md | 3 R/childesr.R | 5 inst/doc/access_childes_db.R | 112 +++++++++--------- inst/doc/access_childes_db.html | 247 +++++++++++++++++++++++++++++++--------- 6 files changed, 262 insertions(+), 123 deletions(-)
Title: Microplots (Sparklines) in 'LaTeX', 'Word', 'HTML', 'Excel'
Description: The microplot function writes a set of R graphics files to be used as
microplots (sparklines) in tables in either 'LaTeX', 'HTML', 'Word',
or 'Excel' files. For 'LaTeX', we provide methods for the
Hmisc::latex() generic function to construct 'latex' tabular
environments which include the graphs. These can be used directly
with the operating system 'pdflatex' or 'latex' command, or by using
one of 'Sweave', 'knitr', 'rmarkdown', or 'Emacs org-mode' as an
intermediary. For 'MS Word', the msWord() function uses the
'flextable' package to construct 'Word' tables which include the
graphs. There are several distinct approaches for constructing HTML
files. The simplest is to use the msWord() function with argument
filetype="html". Alternatively, use either 'Emacs org-mode' or the
htmlTable::htmlTable() function to construct an 'HTML' file
containing tables which include the graphs. See the documentation
for our as.htmlimg() function. For 'Excel' use on 'Windows', the
file examples/irisExcel.xls includes 'VBA' code which brings the
individual panels into individual cells in the spreadsheet.
Examples in the examples and demo subdirectories are shown with
'lattice' graphics, 'ggplot2' graphics, and 'base' graphics.
Examples for 'LaTeX' include 'Sweave' (both 'LaTeX'-style and
'Noweb'-style), 'knitr', 'emacs org-mode', and 'rmarkdown' input
files and their 'pdf' output files. Examples for 'HTML' include
'org-mode' and 'Rmd' input files and their webarchive 'HTML' output
files. In addition, the as.orgtable() function can display a
data.frame in an 'org-mode' document. The examples for 'MS Word'
(with either filetype="docx" or filetype="html") work with all
operating systems. The package does not require the installation of
'LaTeX' or 'MS Word' to be able to write '.tex' or '.docx' files.
Author: Richard M. Heiberger, with contributions from Karen Byron and Nooreen Dabbish.
Maintainer: Richard M. Heiberger <rmh@temple.edu>
Diff between microplot versions 1.0-44 dated 2020-11-28 and 1.0-45 dated 2022-01-26
DESCRIPTION | 8 ++++---- MD5 | 20 ++++++++++---------- NEWS | 12 ++++++++++++ build/partial.rdb |binary build/vignette.rds |binary inst/doc/rmhPoster.R | 3 ++- inst/doc/rmhPoster.Rtex | 1 + inst/doc/rmhPoster.pdf |binary man/cc176.y.adj.Rd | 2 +- man/msWord.Rd | 2 +- vignettes/rmhPoster.Rtex | 1 + 11 files changed, 32 insertions(+), 17 deletions(-)
Title: Wrap R Tools for Debugging and Parametric Programming
Description: Tools for writing and debugging R code. Provides:
'%.>%' dot-pipe (an 'S3' configurable pipe), unpack/to (R style multiple assignment/return),
'build_frame()'/'draw_frame()' ('data.frame' example tools),
'qc()' (quoting concatenate),
':=' (named map builder), 'let()' (converts non-standard evaluation interfaces to parametric standard
evaluation interfaces, inspired by 'gtools::strmacro()' and 'base::bquote()'), and more.
Author: John Mount [aut, cre],
Nina Zumel [aut],
Win-Vector LLC [cph]
Maintainer: John Mount <jmount@win-vector.com>
Diff between wrapr versions 2.0.8 dated 2021-06-11 and 2.0.9 dated 2022-01-26
DESCRIPTION | 8 - MD5 | 55 +++++----- NAMESPACE | 1 NEWS.md | 5 R/Untitled.R |only R/bc.R | 165 +++++++++++++++++++++++++++---- R/qc.R | 6 - build/vignette.rds |binary inst/doc/CornerCases.html | 4 inst/doc/DebugFnW.html | 6 - inst/doc/FrameTools.html | 4 inst/doc/Named_Arguments.html | 4 inst/doc/QuotingConcatinate.html | 4 inst/doc/SubstitutionModes.html | 4 inst/doc/bquote.Rmd | 2 inst/doc/bquote.html | 12 +- inst/doc/dot_pipe.html | 4 inst/doc/lambda.html | 4 inst/doc/let.html | 8 - inst/doc/multi_assign.html | 4 inst/doc/named_map_builder.html | 4 inst/doc/unpack_multiple_assignment.html | 4 inst/doc/wrapr_Eager.html | 4 inst/doc/wrapr_applicable.html | 4 inst/tinytest/test_bc.R | 11 ++ inst/tinytest/test_sx.R |only man/bc.Rd | 10 + man/qc.Rd | 6 - man/sx.Rd |only vignettes/bquote.Rmd | 2 30 files changed, 251 insertions(+), 94 deletions(-)
Title: Statistical Methods for the Analysis of Case-Control Point Data
Description: Statistical methods for analyzing case-control point data. Methods include the ratio of kernel densities, the difference in K Functions, the spatial scan statistic, and q nearest neighbors of cases.
Author: Joshua French [aut, cre] (<https://orcid.org/0000-0002-9708-3353>)
Maintainer: Joshua French <joshua.french@ucdenver.edu>
Diff between smacpod versions 2.3 dated 2021-10-13 and 2.4 dated 2022-01-26
smacpod-2.3/smacpod/man/clusters.Rd |only smacpod-2.4/smacpod/DESCRIPTION | 10 smacpod-2.4/smacpod/MD5 | 21 - smacpod-2.4/smacpod/NAMESPACE | 2 smacpod-2.4/smacpod/NEWS | 3 smacpod-2.4/smacpod/R/Kdest.R | 4 smacpod-2.4/smacpod/R/extract.clusters.R | 17 - smacpod-2.4/smacpod/build/vignette.rds |binary smacpod-2.4/smacpod/inst/doc/smacpod_demo.Rmd | 1 smacpod-2.4/smacpod/inst/doc/smacpod_demo.html | 380 ++++++++++++++----------- smacpod-2.4/smacpod/man/clusters.spscan.Rd |only smacpod-2.4/smacpod/man/reexports.Rd |only smacpod-2.4/smacpod/vignettes/smacpod_demo.Rmd | 1 13 files changed, 260 insertions(+), 179 deletions(-)
Title: 'GeoNetwork' API R Interface
Description: Provides an R interface to the 'GeoNetwork' API (<https://geonetwork-opensource.org/#api>) allowing to upload and publish metadata in a 'GeoNetwork' web-application and expose it to OGC CSW.
Author: Emmanuel Blondel [aut, cre] (<https://orcid.org/0000-0002-5870-5762>)
Maintainer: Emmanuel Blondel <emmanuel.blondel1@gmail.com>
Diff between geonapi versions 0.5-1 dated 2022-01-14 and 0.5-2 dated 2022-01-26
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- R/GNLegacyAPIManager.R | 24 ++++++++++++++++-------- R/GNOpenAPIManager.R | 33 +++++++++++++++++++++------------ R/geonapi.R | 4 ++-- README.md | 2 +- man/GNLegacyAPIManager.Rd | 14 ++++++++++---- man/GNOpenAPIManager.Rd | 18 ++++++++++++------ man/geonapi.Rd | 4 ++-- 9 files changed, 76 insertions(+), 47 deletions(-)
Title: Evaluate Function Calls on HPC Schedulers (LSF, SGE, SLURM,
PBS/Torque)
Description: Evaluate arbitrary function calls using workers on HPC schedulers
in single line of code. All processing is done on the network without
accessing the file system. Remote schedulers are supported via SSH.
Author: Michael Schubert [aut, cre] (<https://orcid.org/0000-0002-6862-5221>)
Maintainer: Michael Schubert <mschu.dev@gmail.com>
Diff between clustermq versions 0.8.95.2 dated 2021-11-05 and 0.8.95.3 dated 2022-01-26
DESCRIPTION | 6 +++--- MD5 | 5 +++-- src/Makevars.ucrt |only tests/testthat/test-2-work_chunk.r | 5 ++--- 4 files changed, 8 insertions(+), 8 deletions(-)
Title: Miscellaneous Functions for Panel Data, Quantiles, and Printing
Results
Description: These are miscellaneous functions for working with panel data, quantiles, and printing results. For panel data, the package includes functions for making a panel data balanced (that is, dropping missing individuals that have missing observations in any time period), converting id numbers to row numbers, and to treat repeated cross sections as panel data under the assumption of rank invariance. For quantiles, there are functions to make distribution functions from a set of data points (this is particularly useful when a distribution function is created in several steps), to combine distribution functions based on some external weights, and to invert distribution functions. Finally, there are several other miscellaneous functions for obtaining weighted means, weighted distribution functions, and weighted quantiles; to generate summary statistics and their differences for two groups; and to add or drop covariates from formulas.
Author: Brantly Callaway [aut, cre]
Maintainer: Brantly Callaway <brantly.callaway@uga.edu>
Diff between BMisc versions 1.4.3 dated 2021-12-09 and 1.4.4 dated 2022-01-26
DESCRIPTION | 8 +- MD5 | 15 ++- NAMESPACE | 1 NEWS.md | 4 + R/BMisc.R | 185 ++++++++++++++++++++++------------------------- R/utils-data-table.R |only man/addCovToFormla.Rd | 2 man/cs2panel.Rd | 2 man/makeBalancedPanel.Rd | 2 9 files changed, 109 insertions(+), 110 deletions(-)
Title: Tools for Reading and Writing ISO/OGC Geographic Metadata
Description: Provides facilities to handle reading and writing of geographic metadata
defined with OGC/ISO 19115, 11119 and 19110 geographic information metadata standards,
and encoded using the ISO 19139 (XML) standard. It includes also a facility to check
the validity of ISO 19139 XML encoded metadata.
Author: Emmanuel Blondel [aut, cre] (<https://orcid.org/0000-0002-5870-5762>)
Maintainer: Emmanuel Blondel <emmanuel.blondel1@gmail.com>
Diff between geometa versions 0.6-5 dated 2021-12-06 and 0.6-6 dated 2022-01-26
DESCRIPTION | 12 +++--- MD5 | 34 ++++++++--------- NAMESPACE | 1 R/GMLLineString.R | 2 - R/GMLMultiCurve.R | 2 - R/GMLMultiPoint.R | 2 - R/GMLMultiSurface.R | 2 - R/GMLPoint.R | 2 - R/GMLPolygon.R | 2 - R/INSPIREMetadataValidator.R | 50 +++++++++++++++++++------ R/ISOAbstractObject.R | 40 +++++++++++++------- R/ISOImageryGCP.R | 2 - R/geometa.R | 4 +- README.md | 2 - man/INSPIREMetadataValidator.Rd | 20 ++++++++-- man/ISOAbstractObject.Rd | 12 ++++-- man/geometa.Rd | 4 +- tests/testthat/test_INSPIREMetadataValidator.R | 30 +++++++++++---- 18 files changed, 149 insertions(+), 74 deletions(-)
Title: Functions for Base Types and Core R and 'Tidyverse' Features
Description: A toolbox for working with base types, core R features
like the condition system, and core 'Tidyverse' features like tidy
evaluation.
Author: Lionel Henry [aut, cre],
Hadley Wickham [aut],
mikefc [cph] (Hash implementation based on Mike's xxhashlite),
Yann Collet [cph] (Author of the embedded xxHash library),
RStudio [cph]
Maintainer: Lionel Henry <lionel@rstudio.com>
Diff between rlang versions 0.4.12 dated 2021-10-18 and 1.0.0 dated 2022-01-26
rlang-0.4.12/rlang/R/cnd-error.R |only rlang-0.4.12/rlang/R/cnd-restarts.R |only rlang-0.4.12/rlang/R/compat-downstream-dep.R |only rlang-0.4.12/rlang/R/compat-register.R |only rlang-0.4.12/rlang/R/lifecycle-retired.R |only rlang-0.4.12/rlang/R/lifecycle.R |only rlang-0.4.12/rlang/R/nse-force.R |only rlang-0.4.12/rlang/R/sexp.R |only rlang-0.4.12/rlang/R/utils-conditions.R |only rlang-0.4.12/rlang/build |only rlang-0.4.12/rlang/man/as_bytes.Rd |only rlang-0.4.12/rlang/man/as_env.Rd |only rlang-0.4.12/rlang/man/as_overscope.Rd |only rlang-0.4.12/rlang/man/as_pairlist.Rd |only rlang-0.4.12/rlang/man/as_quosure.Rd |only rlang-0.4.12/rlang/man/call_parse_type.Rd |only rlang-0.4.12/rlang/man/caller_env.Rd |only rlang-0.4.12/rlang/man/caller_fn.Rd |only rlang-0.4.12/rlang/man/caller_frame.Rd |only rlang-0.4.12/rlang/man/dots_definitions.Rd |only rlang-0.4.12/rlang/man/enquo0.Rd |only rlang-0.4.12/rlang/man/env_bind_exprs.Rd |only rlang-0.4.12/rlang/man/exiting.Rd |only rlang-0.4.12/rlang/man/figures/rlang.png |only rlang-0.4.12/rlang/man/frame_position.Rd |only rlang-0.4.12/rlang/man/is_env.Rd |only rlang-0.4.12/rlang/man/is_expr.Rd |only rlang-0.4.12/rlang/man/is_frame.Rd |only rlang-0.4.12/rlang/man/is_stack.Rd |only rlang-0.4.12/rlang/man/lang_head.Rd |only rlang-0.4.12/rlang/man/lang_modify.Rd |only rlang-0.4.12/rlang/man/lifecycle.Rd |only rlang-0.4.12/rlang/man/mut_node_car.Rd |only rlang-0.4.12/rlang/man/new-vector-along-retired.Rd |only rlang-0.4.12/rlang/man/nse-defuse.Rd |only rlang-0.4.12/rlang/man/nse-force.Rd |only rlang-0.4.12/rlang/man/op-definition.Rd |only rlang-0.4.12/rlang/man/overscope_eval_next.Rd |only rlang-0.4.12/rlang/man/parse_quosure.Rd |only rlang-0.4.12/rlang/man/prepend.Rd |only rlang-0.4.12/rlang/man/quosure.Rd |only rlang-0.4.12/rlang/man/restarting.Rd |only rlang-0.4.12/rlang/man/rst_abort.Rd |only rlang-0.4.12/rlang/man/rst_list.Rd |only rlang-0.4.12/rlang/man/stack_trim.Rd |only rlang-0.4.12/rlang/man/tidyeval-data.Rd |only rlang-0.4.12/rlang/man/with_abort.Rd |only rlang-0.4.12/rlang/man/with_restarts.Rd |only rlang-0.4.12/rlang/src/export |only rlang-0.4.12/rlang/src/export.c |only rlang-0.4.12/rlang/src/internal/expr-interp-rotate.c |only rlang-0.4.12/rlang/src/internal/expr-interp-rotate.h |only rlang-0.4.12/rlang/src/internal/expr-interp.c |only rlang-0.4.12/rlang/src/internal/expr-interp.h |only rlang-0.4.12/rlang/src/lib |only rlang-0.4.12/rlang/src/lib.c |only rlang-0.4.12/rlang/tests/testthat/_snaps/cnd-error.md |only rlang-0.4.12/rlang/tests/testthat/_snaps/env-special.md |only rlang-0.4.12/rlang/tests/testthat/helper-stack.R |only rlang-0.4.12/rlang/tests/testthat/test-cnd-error.R |only rlang-0.4.12/rlang/tests/testthat/test-nse-force.R |only rlang-0.4.12/rlang/tests/testthat/test-retired.R |only rlang-0.4.12/rlang/tests/testthat/test-sexp.R |only rlang-1.0.0/rlang/DESCRIPTION | 15 rlang-1.0.0/rlang/MD5 | 819 +++-- rlang-1.0.0/rlang/NAMESPACE | 161 - rlang-1.0.0/rlang/NEWS.md | 534 +++ rlang-1.0.0/rlang/R/aaa-topics.R |only rlang-1.0.0/rlang/R/aaa.R | 147 + rlang-1.0.0/rlang/R/arg.R | 309 +- rlang-1.0.0/rlang/R/attr.R | 206 - rlang-1.0.0/rlang/R/bytes.R |only rlang-1.0.0/rlang/R/c-lib.R |only rlang-1.0.0/rlang/R/call.R | 525 ++- rlang-1.0.0/rlang/R/cnd-abort.R | 1375 ++++++++-- rlang-1.0.0/rlang/R/cnd-entrace.R | 271 + rlang-1.0.0/rlang/R/cnd-handlers.R | 386 +- rlang-1.0.0/rlang/R/cnd-last.R |only rlang-1.0.0/rlang/R/cnd-message.R | 382 ++ rlang-1.0.0/rlang/R/cnd-signal.R | 313 +- rlang-1.0.0/rlang/R/cnd.R | 487 +++ rlang-1.0.0/rlang/R/compat-cli.R |only rlang-1.0.0/rlang/R/compat-downstream-deps.R |only rlang-1.0.0/rlang/R/compat-friendly-type.R | 175 + rlang-1.0.0/rlang/R/compat-lifecycle.R | 114 rlang-1.0.0/rlang/R/compat-linked-version.R | 2 rlang-1.0.0/rlang/R/compat-purrr.R | 148 - rlang-1.0.0/rlang/R/compat-rlang.R |only rlang-1.0.0/rlang/R/compat-s3-register.R |only rlang-1.0.0/rlang/R/compat-vctrs.R |only rlang-1.0.0/rlang/R/deparse.R | 158 - rlang-1.0.0/rlang/R/dots-ellipsis.R |only rlang-1.0.0/rlang/R/dots.R | 222 - rlang-1.0.0/rlang/R/env-binding.R | 171 - rlang-1.0.0/rlang/R/env-special.R | 168 - rlang-1.0.0/rlang/R/env.R | 145 - rlang-1.0.0/rlang/R/eval-tidy.R | 317 +- rlang-1.0.0/rlang/R/eval.R | 204 - rlang-1.0.0/rlang/R/expr.R | 101 rlang-1.0.0/rlang/R/fn.R | 187 - rlang-1.0.0/rlang/R/formula.R | 111 rlang-1.0.0/rlang/R/hash.R | 69 rlang-1.0.0/rlang/R/lifecycle-deprecated.R |only rlang-1.0.0/rlang/R/lifecycle-superseded.R |only rlang-1.0.0/rlang/R/names.R |only rlang-1.0.0/rlang/R/node.R | 59 rlang-1.0.0/rlang/R/nse-defuse.R | 623 ++-- rlang-1.0.0/rlang/R/nse-inject.R |only rlang-1.0.0/rlang/R/obj.R |only rlang-1.0.0/rlang/R/operators.R | 76 rlang-1.0.0/rlang/R/parse.R | 16 rlang-1.0.0/rlang/R/quo.R | 332 +- rlang-1.0.0/rlang/R/raw.R | 5 rlang-1.0.0/rlang/R/rlang.R | 57 rlang-1.0.0/rlang/R/s3.R | 4 rlang-1.0.0/rlang/R/session.R |only rlang-1.0.0/rlang/R/stack.R | 282 +- rlang-1.0.0/rlang/R/state.R | 18 rlang-1.0.0/rlang/R/sym.R | 66 rlang-1.0.0/rlang/R/topic-errors.R |only rlang-1.0.0/rlang/R/topic-nse.R |only rlang-1.0.0/rlang/R/trace.R | 788 +++-- rlang-1.0.0/rlang/R/types-check.R |only rlang-1.0.0/rlang/R/types.R | 102 rlang-1.0.0/rlang/R/utils-cli-tree.R | 17 rlang-1.0.0/rlang/R/utils-encoding.R | 59 rlang-1.0.0/rlang/R/utils.R | 246 + rlang-1.0.0/rlang/R/vec-na.R | 8 rlang-1.0.0/rlang/R/vec-new.R | 24 rlang-1.0.0/rlang/R/vec-squash.R | 34 rlang-1.0.0/rlang/R/vec.R | 10 rlang-1.0.0/rlang/R/weakref.R | 8 rlang-1.0.0/rlang/R/zzz.R |only rlang-1.0.0/rlang/README.md | 70 rlang-1.0.0/rlang/inst/backtrace-ver | 2 rlang-1.0.0/rlang/man/UQ.Rd |only rlang-1.0.0/rlang/man/abort.Rd | 288 +- rlang-1.0.0/rlang/man/are_na.Rd | 2 rlang-1.0.0/rlang/man/arg_match.Rd | 35 rlang-1.0.0/rlang/man/args_dots_empty.Rd |only rlang-1.0.0/rlang/man/args_dots_used.Rd |only rlang-1.0.0/rlang/man/args_error_context.Rd |only rlang-1.0.0/rlang/man/as_closure.Rd |only 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rlang-1.0.0/rlang/src/internal/cnd-handlers.c |only rlang-1.0.0/rlang/src/internal/cnd.c |only rlang-1.0.0/rlang/src/internal/decl |only rlang-1.0.0/rlang/src/internal/dots-ellipsis.c |only rlang-1.0.0/rlang/src/internal/dots.c | 830 +++--- rlang-1.0.0/rlang/src/internal/dots.h | 56 rlang-1.0.0/rlang/src/internal/encoding.c |only rlang-1.0.0/rlang/src/internal/env-binding.c | 182 - rlang-1.0.0/rlang/src/internal/env.c | 63 rlang-1.0.0/rlang/src/internal/env.h |only rlang-1.0.0/rlang/src/internal/eval-tidy.c | 348 +- rlang-1.0.0/rlang/src/internal/eval.c | 18 rlang-1.0.0/rlang/src/internal/exported.c |only rlang-1.0.0/rlang/src/internal/file.c |only rlang-1.0.0/rlang/src/internal/file.h |only rlang-1.0.0/rlang/src/internal/fn.c | 25 rlang-1.0.0/rlang/src/internal/hash.c | 195 + rlang-1.0.0/rlang/src/internal/init.c |only rlang-1.0.0/rlang/src/internal/internal.c | 85 rlang-1.0.0/rlang/src/internal/internal.h | 58 rlang-1.0.0/rlang/src/internal/names.c |only 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rlang-1.0.0/rlang/tests/testthat/_snaps/arg.md | 200 + rlang-1.0.0/rlang/tests/testthat/_snaps/attr.md |only rlang-1.0.0/rlang/tests/testthat/_snaps/bytes.md |only rlang-1.0.0/rlang/tests/testthat/_snaps/c-api.md |only rlang-1.0.0/rlang/tests/testthat/_snaps/call.md |only rlang-1.0.0/rlang/tests/testthat/_snaps/cnd-abort.md | 1226 ++++++++ rlang-1.0.0/rlang/tests/testthat/_snaps/cnd-entrace.md | 203 - rlang-1.0.0/rlang/tests/testthat/_snaps/cnd-handlers.md |only rlang-1.0.0/rlang/tests/testthat/_snaps/cnd-message.md |only rlang-1.0.0/rlang/tests/testthat/_snaps/cnd-signal.md | 69 rlang-1.0.0/rlang/tests/testthat/_snaps/cnd.md |only rlang-1.0.0/rlang/tests/testthat/_snaps/compat-cli.md |only rlang-1.0.0/rlang/tests/testthat/_snaps/compat-downstream-deps.md |only rlang-1.0.0/rlang/tests/testthat/_snaps/compat-rlang.md |only rlang-1.0.0/rlang/tests/testthat/_snaps/compat-s3-register.md |only rlang-1.0.0/rlang/tests/testthat/_snaps/compat-vctrs.md |only rlang-1.0.0/rlang/tests/testthat/_snaps/current |only rlang-1.0.0/rlang/tests/testthat/_snaps/dots-ellipsis.md |only rlang-1.0.0/rlang/tests/testthat/_snaps/dots.md |only rlang-1.0.0/rlang/tests/testthat/_snaps/env-binding.md |only rlang-1.0.0/rlang/tests/testthat/_snaps/eval-tidy.md |only rlang-1.0.0/rlang/tests/testthat/_snaps/fn.md |only rlang-1.0.0/rlang/tests/testthat/_snaps/nse-defuse.md |only rlang-1.0.0/rlang/tests/testthat/_snaps/nse-inject.md |only rlang-1.0.0/rlang/tests/testthat/_snaps/operators.md | 21 rlang-1.0.0/rlang/tests/testthat/_snaps/parse.md |only rlang-1.0.0/rlang/tests/testthat/_snaps/pre-3.6.0 |only rlang-1.0.0/rlang/tests/testthat/_snaps/session.md |only rlang-1.0.0/rlang/tests/testthat/_snaps/state.md |only rlang-1.0.0/rlang/tests/testthat/_snaps/sym.md |only rlang-1.0.0/rlang/tests/testthat/_snaps/trace.md | 690 +++-- rlang-1.0.0/rlang/tests/testthat/_snaps/types-check.md |only rlang-1.0.0/rlang/tests/testthat/_snaps/types.md |only rlang-1.0.0/rlang/tests/testthat/fixtures/error-backtrace-conditionMessage.R | 2 rlang-1.0.0/rlang/tests/testthat/fixtures/error-backtrace.R | 1 rlang-1.0.0/rlang/tests/testthat/fixtures/error-entrace.R | 8 rlang-1.0.0/rlang/tests/testthat/fixtures/rlanglibtest/DESCRIPTION | 1 rlang-1.0.0/rlang/tests/testthat/fixtures/rlanglibtest/src/init.c | 20 rlang-1.0.0/rlang/tests/testthat/fixtures/rlanglibtest/src/test-quo-accessors.c | 8 rlang-1.0.0/rlang/tests/testthat/helper-c-api.R | 26 rlang-1.0.0/rlang/tests/testthat/helper-cnd.R | 29 rlang-1.0.0/rlang/tests/testthat/helper-locale.R | 17 rlang-1.0.0/rlang/tests/testthat/helper-rlang.R | 46 rlang-1.0.0/rlang/tests/testthat/helper-trace.R | 2 rlang-1.0.0/rlang/tests/testthat/test-arg.R | 253 + rlang-1.0.0/rlang/tests/testthat/test-attr.R | 47 rlang-1.0.0/rlang/tests/testthat/test-bytes.R |only rlang-1.0.0/rlang/tests/testthat/test-c-api.R | 847 +++++- rlang-1.0.0/rlang/tests/testthat/test-call.R | 188 + rlang-1.0.0/rlang/tests/testthat/test-cnd-abort.R | 548 +++ rlang-1.0.0/rlang/tests/testthat/test-cnd-entrace.R | 261 + rlang-1.0.0/rlang/tests/testthat/test-cnd-handlers.R | 155 - rlang-1.0.0/rlang/tests/testthat/test-cnd-message.R | 448 +++ rlang-1.0.0/rlang/tests/testthat/test-cnd-signal.R | 163 - rlang-1.0.0/rlang/tests/testthat/test-cnd.R | 384 ++ rlang-1.0.0/rlang/tests/testthat/test-compat-cli.R |only rlang-1.0.0/rlang/tests/testthat/test-compat-downstream-deps.R |only rlang-1.0.0/rlang/tests/testthat/test-compat-purrr.R |only rlang-1.0.0/rlang/tests/testthat/test-compat-rlang.R |only rlang-1.0.0/rlang/tests/testthat/test-compat-s3-register.R |only rlang-1.0.0/rlang/tests/testthat/test-compat-vctrs.R |only rlang-1.0.0/rlang/tests/testthat/test-deparse.R | 174 + rlang-1.0.0/rlang/tests/testthat/test-deprecated.R |only rlang-1.0.0/rlang/tests/testthat/test-dots-ellipsis.R |only rlang-1.0.0/rlang/tests/testthat/test-dots.R | 46 rlang-1.0.0/rlang/tests/testthat/test-encoding.R | 13 rlang-1.0.0/rlang/tests/testthat/test-env-binding.R | 114 rlang-1.0.0/rlang/tests/testthat/test-env-special.R | 16 rlang-1.0.0/rlang/tests/testthat/test-env.R | 79 rlang-1.0.0/rlang/tests/testthat/test-eval-tidy.R | 77 rlang-1.0.0/rlang/tests/testthat/test-expr.R | 15 rlang-1.0.0/rlang/tests/testthat/test-fn.R | 58 rlang-1.0.0/rlang/tests/testthat/test-formula.R | 43 rlang-1.0.0/rlang/tests/testthat/test-friendly-type.R |only rlang-1.0.0/rlang/tests/testthat/test-hash.R | 43 rlang-1.0.0/rlang/tests/testthat/test-names.R |only rlang-1.0.0/rlang/tests/testthat/test-node.R | 20 rlang-1.0.0/rlang/tests/testthat/test-nse-defuse.R | 145 - rlang-1.0.0/rlang/tests/testthat/test-nse-inject.R |only rlang-1.0.0/rlang/tests/testthat/test-obj.R |only rlang-1.0.0/rlang/tests/testthat/test-operators.R | 6 rlang-1.0.0/rlang/tests/testthat/test-parent-errors.Rmd |only rlang-1.0.0/rlang/tests/testthat/test-parse.R | 12 rlang-1.0.0/rlang/tests/testthat/test-quo.R | 9 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Title: Toolbox for Model Building and Forecasting
Description: Implements functions and instruments for regression model building and its
application to forecasting. The main scope of the package is in variables selection
and models specification for cases of time series data. This includes promotional
modelling, selection between different dynamic regressions with non-standard
distributions of errors, selection based on cross validation, solutions to the fat
regression model problem and more. Models developed in the package are tailored
specifically for forecasting purposes. So as a results there are several methods
that allow producing forecasts from these models and visualising them.
Author: Ivan Svetunkov [aut, cre] (Lecturer at Centre for Marketing Analytics
and Forecasting, Lancaster University, UK),
Yves R. Sagaert [ctb] (Visiting Research at Centre for Marketing
Analytics and Forecasting, Lancaster University, UK)
Maintainer: Ivan Svetunkov <ivan@svetunkov.ru>
Diff between greybox versions 1.0.2 dated 2021-12-01 and 1.0.3 dated 2022-01-26
DESCRIPTION | 10 +- MD5 | 36 +++---- NAMESPACE | 2 NEWS | 16 +++ R/alm.R | 49 ++++++++-- R/methods.R | 94 ++++++++++++++------ R/scaler.R | 13 +- R/spread.R | 6 + R/zzz.R | 24 ++--- build/partial.rdb |binary inst/doc/alm.R | 9 + inst/doc/alm.Rmd | 80 ++++++++++++++--- inst/doc/alm.html | 195 ++++++++++++++++++++++++------------------- inst/doc/greybox.html | 4 inst/doc/maUsingGreybox.html | 4 inst/doc/ro.html | 14 +-- man/alm.Rd | 11 +- man/sm.Rd | 3 vignettes/alm.Rmd | 80 ++++++++++++++--- 19 files changed, 442 insertions(+), 208 deletions(-)
Title: Forecasting Using State Space Models
Description: Functions implementing Single Source of Error state space models for purposes of time series analysis and forecasting.
The package includes ADAM (Svetunkov, 2021, <https://openforecast.org/adam/>),
Exponential Smoothing (Hyndman et al., 2008, <doi: 10.1007/978-3-540-71918-2>),
SARIMA (Svetunkov & Boylan, 2019 <doi: 10.1080/00207543.2019.1600764>),
Complex Exponential Smoothing (Svetunkov & Kourentzes, 2018, <doi: 10.13140/RG.2.2.24986.29123>),
Simple Moving Average (Svetunkov & Petropoulos, 2018 <doi: 10.1080/00207543.2017.1380326>)
and several simulation functions. It also allows dealing with intermittent demand based on the
iETS framework (Svetunkov & Boylan, 2019, <doi: 10.13140/RG.2.2.35897.06242>).
Author: Ivan Svetunkov [aut, cre] (Lecturer at Centre for Marketing Analytics
and Forecasting, Lancaster University, UK)
Maintainer: Ivan Svetunkov <ivan@svetunkov.ru>
Diff between smooth versions 3.1.4 dated 2021-12-01 and 3.1.5 dated 2022-01-26
DESCRIPTION | 16 MD5 | 92 +-- NEWS | 9 R/adam.R | 50 +- R/autoadam.R | 10 R/ces.R | 11 R/es.R | 22 R/smoothCombine.R | 13 build/partial.rdb |binary inst/doc/adam.R | 70 +- inst/doc/adam.Rmd | 76 +-- inst/doc/adam.html | 974 ++++++++++++++++++++--------------------- inst/doc/ces.R | 11 inst/doc/ces.Rmd | 13 inst/doc/ces.html | 114 ++-- inst/doc/es.R | 35 - inst/doc/es.Rmd | 37 - inst/doc/es.html | 416 ++++++++--------- inst/doc/gum.R | 9 inst/doc/gum.Rmd | 15 inst/doc/gum.html | 134 ++--- inst/doc/oes.html | 114 ++-- inst/doc/simulate.html | 74 +-- inst/doc/sma.R | 21 inst/doc/sma.Rmd | 29 - inst/doc/sma.html | 45 - inst/doc/smooth.html | 4 inst/doc/ssarima.R | 25 - inst/doc/ssarima.Rmd | 37 - inst/doc/ssarima.html | 240 ++++------ man/adam.Rd | 34 - man/ces.Rd | 11 man/es.Rd | 22 man/forecast.smooth.Rd | 6 man/smoothCombine.Rd | 13 tests/testthat/test_adam.R | 212 ++++---- tests/testthat/test_ces.R | 28 - tests/testthat/test_es.R | 46 - tests/testthat/test_gum.R | 34 - tests/testthat/test_simulate.R | 10 tests/testthat/test_ssarima.R | 24 - vignettes/adam.Rmd | 76 +-- vignettes/ces.Rmd | 13 vignettes/es.Rmd | 37 - vignettes/gum.Rmd | 15 vignettes/sma.Rmd | 29 - vignettes/ssarima.Rmd | 37 - 47 files changed, 1684 insertions(+), 1679 deletions(-)
Title: Test Surveys by Simulating Spatially-Correlated Populations
Description: Simulate age-structured populations that vary in space and time and
explore the efficacy of a range of built-in or user-defined sampling
protocols to reproduce the population parameters of the known population.
(See Regular et al. (2020) <doi:10.1371/journal.pone.0232822> for more
details).
Author: Paul Regular [aut, cre] (<https://orcid.org/0000-0003-0318-2615>),
Jonathan Babyn [ctb],
Greg Robertson [ctb]
Maintainer: Paul Regular <Paul.Regular@dfo-mpo.gc.ca>
Diff between SimSurvey versions 0.1.3 dated 2021-01-13 and 0.1.4 dated 2022-01-26
SimSurvey-0.1.3/SimSurvey/R/zzz.R |only SimSurvey-0.1.4/SimSurvey/DESCRIPTION | 13 SimSurvey-0.1.4/SimSurvey/MD5 | 32 - SimSurvey-0.1.4/SimSurvey/NEWS.md | 10 SimSurvey-0.1.4/SimSurvey/R/make_grid.R | 27 - SimSurvey-0.1.4/SimSurvey/R/plot_sim.R | 11 SimSurvey-0.1.4/SimSurvey/R/sim_dist.R | 77 +++ SimSurvey-0.1.4/SimSurvey/R/sim_dist_spde.R | 8 SimSurvey-0.1.4/SimSurvey/R/sim_survey.R | 6 SimSurvey-0.1.4/SimSurvey/R/vis_sim.R | 15 SimSurvey-0.1.4/SimSurvey/README.md | 12 SimSurvey-0.1.4/SimSurvey/build/vignette.rds |binary SimSurvey-0.1.4/SimSurvey/inst/doc/custom_closures.html | 316 +++------------- SimSurvey-0.1.4/SimSurvey/inst/rmd/vis_sim.Rmd | 4 SimSurvey-0.1.4/SimSurvey/man/figures |only SimSurvey-0.1.4/SimSurvey/man/make_grid.Rd | 2 SimSurvey-0.1.4/SimSurvey/man/plot_trend.Rd | 4 SimSurvey-0.1.4/SimSurvey/man/sim_parabola.Rd | 31 + 18 files changed, 254 insertions(+), 314 deletions(-)
Title: Solves Minimum Cost Bipartite Matching Problems
Description: Header library and R functions to solve minimum cost bipartite matching problem
using Huhn-Munkres algorithm (Hungarian algorithm; <https://en.wikipedia.org/wiki/Hungarian_algorithm>;
Kuhn (1955) <doi:10.1002/nav.3800020109>).
This is a repackaging of code written by Cong Ma in the GitHub repo <https://github.com/mcximing/hungarian-algorithm-cpp>.
Author: Justin Silverman [aut, cre],
Cong Ma [ctb, cph],
Markus Buehren [ctb, cph]
Maintainer: Justin Silverman <JustinSilverman@psu.edu>
Diff between RcppHungarian versions 0.1 dated 2019-08-02 and 0.2 dated 2022-01-26
DESCRIPTION | 14 MD5 | 14 NEWS.md | 4 README.md | 9 build/vignette.rds |binary inst/doc/Introduction-to-RcppHungarian.R | 16 inst/doc/Introduction-to-RcppHungarian.html | 449 ++++++++-------------------- inst/include/RcppHungarian.h | 6 8 files changed, 180 insertions(+), 332 deletions(-)
Title: Quantile Regression
Description: Estimation and inference methods for models of conditional quantiles:
Linear and nonlinear parametric and non-parametric (total variation penalized) models
for conditional quantiles of a univariate response and several methods for handling
censored survival data. Portfolio selection methods based on expected shortfall
risk are also now included. See Koenker (2006) <doi:10.1017/CBO9780511754098> and
Koenker et al. (2017) <doi:10.1201/9781315120256>.
Author: Roger Koenker [cre, aut],
Stephen Portnoy [ctb] (Contributions to Censored QR code),
Pin Tian Ng [ctb] (Contributions to Sparse QR code),
Blaise Melly [ctb] (Contributions to preprocessing code),
Achim Zeileis [ctb] (Contributions to dynrq code essentially identical
to his dynlm code),
Philip Grosjean [ctb] (Contributions to nlrq code),
Cleve Moler [ctb] (author of several linpack routines),
Yousef Saad [ctb] (author of sparskit2),
Victor Chernozhukov [ctb] (contributions to extreme value inference
code),
Ivan Fernandez-Val [ctb] (contributions to extreme value inference
code),
Brian D Ripley [trl, ctb] (Initial (2001) R port from S (to my
everlasting shame -- how could I have been so slow to adopt R!) and
for numerous other suggestions and useful advice)
Maintainer: Roger Koenker <rkoenker@illinois.edu>
Diff between quantreg versions 5.86 dated 2021-06-06 and 5.87 dated 2022-01-26
DESCRIPTION | 10 +++++----- MD5 | 10 +++++----- NAMESPACE | 1 - R/anova.R | 6 +++--- R/quantreg.R | 2 +- build/vignette.rds |binary 6 files changed, 14 insertions(+), 15 deletions(-)
Title: R Interface to NLopt
Description: Solve optimization problems using an R interface to NLopt. NLopt is a
free/open-source library for nonlinear optimization, providing a common
interface for a number of different free optimization routines available
online as well as original implementations of various other algorithms.
See <https://nlopt.readthedocs.io/en/latest/NLopt_Algorithms/> for more
information on the available algorithms. Building from included sources
requires 'CMake'. On Linux and 'macOS', if a suitable system build of
NLopt (2.7.0 or later) is found, it is used; otherwise, it is built
from included sources via 'CMake'. On Windows, NLopt is obtained through
'rwinlib' for 'R <= 4.1.x' or grabbed from the 'Rtools42 toolchain' for
'R >= 4.2.0'.
Author: Jelmer Ypma [aut],
Steven G. Johnson [aut] (author of the NLopt C library),
Hans W. Borchers [ctb],
Dirk Eddelbuettel [ctb],
Brian Ripley [ctb] (build process on multiple OS),
Kurt Hornik [ctb] (build process on multiple OS),
Julien Chiquet [ctb],
Avraham Adler [ctb] (removal deprecated calls from tests,
<https://orcid.org/0000-0002-3039-0703>),
Xiongtao Dai [ctb],
Aymeric Stamm [ctb, cre] (<https://orcid.org/0000-0002-8725-3654>),
Jeroen Ooms [ctb]
Maintainer: Aymeric Stamm <aymeric.stamm@math.cnrs.fr>
Diff between nloptr versions 1.2.2.3 dated 2021-11-02 and 2.0.0 dated 2022-01-26
nloptr-1.2.2.3/nloptr/CHANGELOG |only nloptr-1.2.2.3/nloptr/INSTALL.windows |only nloptr-1.2.2.3/nloptr/R/PkgFlags.R |only nloptr-1.2.2.3/nloptr/R/PkgFlags.R.in |only nloptr-1.2.2.3/nloptr/R/onLoad.R |only nloptr-1.2.2.3/nloptr/R/onUnLoad.R |only nloptr-1.2.2.3/nloptr/inst/doc/nloptr.pdf |only nloptr-1.2.2.3/nloptr/src/dummy.cpp |only nloptr-1.2.2.3/nloptr/src/nlopt_src |only nloptr-1.2.2.3/nloptr/tests/test-all.R |only nloptr-1.2.2.3/nloptr/tests/testthat/options.R |only nloptr-1.2.2.3/nloptr/tests/testthat/test-C-api.R |only nloptr-2.0.0/nloptr/DESCRIPTION | 63 nloptr-2.0.0/nloptr/MD5 | 398 -- nloptr-2.0.0/nloptr/NEWS.md |only nloptr-2.0.0/nloptr/R/auglag.R | 2 nloptr-2.0.0/nloptr/R/catch-routine-registration.R |only nloptr-2.0.0/nloptr/R/finite.diff.R | 74 nloptr-2.0.0/nloptr/R/is.nloptr.R | 2 nloptr-2.0.0/nloptr/R/nloptr-package.R | 5 nloptr-2.0.0/nloptr/R/nloptr.R | 8 nloptr-2.0.0/nloptr/R/nloptr.add.default.options.R | 146 nloptr-2.0.0/nloptr/R/nm.R | 4 nloptr-2.0.0/nloptr/R/slsqp.R | 2 nloptr-2.0.0/nloptr/R/zzz.R |only nloptr-2.0.0/nloptr/README.md | 155 nloptr-2.0.0/nloptr/build/vignette.rds |binary nloptr-2.0.0/nloptr/cleanup | 12 nloptr-2.0.0/nloptr/configure | 1963 +++-------- nloptr-2.0.0/nloptr/configure.ac | 180 - nloptr-2.0.0/nloptr/inst/CITATION | 41 nloptr-2.0.0/nloptr/inst/doc/nloptr.Rmd | 555 +-- nloptr-2.0.0/nloptr/inst/doc/nloptr.html |only nloptr-2.0.0/nloptr/inst/include/nlopt.f |only nloptr-2.0.0/nloptr/inst/include/nlopt.h | 341 - nloptr-2.0.0/nloptr/inst/include/nlopt.hpp | 281 - nloptr-2.0.0/nloptr/inst/include/nloptrAPI.h | 125 nloptr-2.0.0/nloptr/man/auglag.Rd | 44 nloptr-2.0.0/nloptr/man/bobyqa.Rd | 129 nloptr-2.0.0/nloptr/man/ccsaq.Rd | 29 nloptr-2.0.0/nloptr/man/check.derivatives.Rd | 175 nloptr-2.0.0/nloptr/man/cobyla.Rd | 26 nloptr-2.0.0/nloptr/man/crs2lm.Rd | 29 nloptr-2.0.0/nloptr/man/direct.Rd | 40 nloptr-2.0.0/nloptr/man/figures |only nloptr-2.0.0/nloptr/man/is.nloptr.Rd | 54 nloptr-2.0.0/nloptr/man/isres.Rd | 30 nloptr-2.0.0/nloptr/man/lbfgs.Rd | 26 nloptr-2.0.0/nloptr/man/mlsl.Rd | 233 - nloptr-2.0.0/nloptr/man/mma.Rd | 242 - nloptr-2.0.0/nloptr/man/neldermead.Rd | 171 nloptr-2.0.0/nloptr/man/newuoa.Rd | 122 nloptr-2.0.0/nloptr/man/nl.grad.Rd | 100 nloptr-2.0.0/nloptr/man/nl.opts.Rd | 78 nloptr-2.0.0/nloptr/man/nloptr-package.Rd | 291 - nloptr-2.0.0/nloptr/man/nloptr.Rd | 46 nloptr-2.0.0/nloptr/man/nloptr.get.default.options.Rd | 72 nloptr-2.0.0/nloptr/man/nloptr.print.options.Rd | 84 nloptr-2.0.0/nloptr/man/print.nloptr.Rd | 64 nloptr-2.0.0/nloptr/man/sbplx.Rd | 151 nloptr-2.0.0/nloptr/man/slsqp.Rd | 227 - nloptr-2.0.0/nloptr/man/stogo.Rd | 29 nloptr-2.0.0/nloptr/man/tnewton.Rd | 29 nloptr-2.0.0/nloptr/man/varmetric.Rd | 27 nloptr-2.0.0/nloptr/src/Makevars.in | 129 nloptr-2.0.0/nloptr/src/Makevars.ucrt |only nloptr-2.0.0/nloptr/src/Makevars.win | 35 nloptr-2.0.0/nloptr/src/init_nloptr.c | 22 nloptr-2.0.0/nloptr/src/nlopt-src.tar.gz |only nloptr-2.0.0/nloptr/src/nloptr.c | 5 nloptr-2.0.0/nloptr/src/nloptr.h | 9 nloptr-2.0.0/nloptr/src/scripts |only nloptr-2.0.0/nloptr/src/test-C-API.cpp |only nloptr-2.0.0/nloptr/src/test-C-API.h |only nloptr-2.0.0/nloptr/src/test-runner.cpp |only nloptr-2.0.0/nloptr/tests/testthat.R |only nloptr-2.0.0/nloptr/tests/testthat/test-banana-global.R | 266 - nloptr-2.0.0/nloptr/tests/testthat/test-banana.R | 2 nloptr-2.0.0/nloptr/tests/testthat/test-cpp.R |only nloptr-2.0.0/nloptr/tests/testthat/test-derivative-checker.R | 76 nloptr-2.0.0/nloptr/tests/testthat/test-example.R | 2 nloptr-2.0.0/nloptr/tests/testthat/test-hs023.R | 2 nloptr-2.0.0/nloptr/tests/testthat/test-hs071.R | 5 nloptr-2.0.0/nloptr/tests/testthat/test-options-maxtime.R | 4 nloptr-2.0.0/nloptr/tests/testthat/test-parameters.R | 2 nloptr-2.0.0/nloptr/tests/testthat/test-simple.R | 2 nloptr-2.0.0/nloptr/tests/testthat/test-systemofeq.R | 2 nloptr-2.0.0/nloptr/tools |only nloptr-2.0.0/nloptr/vignettes/nloptr.Rmd | 555 +-- nloptr-2.0.0/nloptr/vignettes/reflist.bib | 164 90 files changed, 3607 insertions(+), 4580 deletions(-)
Title: Kernel Density Estimation for Heaped and Rounded Data
Description: In self-reported or anonymised data the user often encounters
heaped data, i.e. data which are rounded (to a possibly different degree
of coarseness). While this is mostly a minor problem in parametric density
estimation the bias can be very large for non-parametric methods such as kernel
density estimation. This package implements a partly Bayesian algorithm treating
the true unknown values as additional parameters and estimates the rounding
parameters to give a corrected kernel density estimate. It supports various
standard bandwidth selection methods. Varying rounding probabilities (depending
on the true value) and asymmetric rounding is estimable as well: Gross, M. and Rendtel, U. (2016) (<doi:10.1093/jssam/smw011>).
Additionally, bivariate non-parametric density estimation for rounded data, Gross, M. et al. (2016) (<doi:10.1111/rssa.12179>),
as well as data aggregated on areas is supported.
Author: Marcus Gross [aut, cre],
Lukas Fuchs [aut],
Kerstin Erfurth [ctb]
Maintainer: Marcus Gross <marcus.gross@inwt-statistics.de>
Diff between Kernelheaping versions 2.2.8 dated 2021-05-11 and 2.3.0 dated 2022-01-26
Kernelheaping-2.2.8/Kernelheaping/data/students.R |only Kernelheaping-2.3.0/Kernelheaping/DESCRIPTION | 14 Kernelheaping-2.3.0/Kernelheaping/MD5 | 9 Kernelheaping-2.3.0/Kernelheaping/NAMESPACE | 3 Kernelheaping-2.3.0/Kernelheaping/R/functions.R | 3767 ++++++++++-------- Kernelheaping-2.3.0/Kernelheaping/data/students.rda |only Kernelheaping-2.3.0/Kernelheaping/man/dshape3dProp.Rd |only 7 files changed, 2130 insertions(+), 1663 deletions(-)
Title: A Functionally Oriented Interface for Integrating 'Julia' with R
Description: Allows to import functions and whole packages from 'Julia' in R.
Imported 'Julia' functions can directly be called as R functions.
Data structures can be translated between 'Julia' and R.
More details can also be found in the corresponding article
<doi:10.18637/jss.v101.i06>.
Author: Stefan Lenz [aut, cre] (<https://orcid.org/0000-0001-9135-1743>),
Harald Binder [aut, ths] (<https://orcid.org/0000-0002-5666-8662>),
Angelo D'Ambrosio [ctb] (<https://orcid.org/0000-0002-2045-5155>)
Maintainer: Stefan Lenz <stefan-m-lenz@web.de>
Diff between JuliaConnectoR versions 1.1.0 dated 2021-11-09 and 1.1.1 dated 2022-01-26
DESCRIPTION | 8 +++++--- MD5 | 4 ++-- inst/CITATION | 32 +++++++++++++++++--------------- 3 files changed, 24 insertions(+), 20 deletions(-)
More information about JuliaConnectoR at CRAN
Permanent link
Title: Tools for Choice Model Estimation and Application
Description: Choice models are a widely used technique across numerous scientific disciplines. The Apollo package is a very flexible tool for the estimation and application
of choice models in R. Users are able to write their own
model functions or use a mix of already available ones. Random heterogeneity,
both continuous and discrete and at the level of individuals and
choices, can be incorporated for all models. There is support for both standalone
models and hybrid model structures. Both classical
and Bayesian estimation is available, and multiple discrete
continuous models are covered in addition to discrete choice.
Multi-threading processing is supported for estimation and a large
number of pre and post-estimation routines, including for computing posterior
(individual-level) distributions are available.
For examples, a manual, and a support forum, visit
<http://www.ApolloChoiceModelling.com>. For more information on choice
models see Train, K. (2009) <isbn:978-0-521-74738-7> and Hess,
S. & Daly, A.J. (2014) <isbn:978-1-781-00314-5> for an overview
of the field.
Author: Stephane Hess [aut, cre],
David Palma [aut],
Thomas Hancock [ctb]
Maintainer: Stephane Hess <S.Hess@leeds.ac.uk>
Diff between apollo versions 0.2.6 dated 2021-11-08 and 0.2.7 dated 2022-01-26
DESCRIPTION | 21 MD5 | 335 +++--- NAMESPACE | 1 R/apollo_addCovariance.R | 4 R/apollo_attach.R | 4 R/apollo_avgInterDraws.R | 12 R/apollo_avgIntraDraws.R | 5 R/apollo_basTest.R | 9 R/apollo_bootstrap.R | 54 - R/apollo_checkArguments.R | 17 R/apollo_choiceAnalysis.R | 44 R/apollo_classAlloc.R | 426 ++++---- R/apollo_cnl.R | 65 - R/apollo_combineModels.R | 7 R/apollo_combineResults.R | 28 R/apollo_compareInputs.R | 6 R/apollo_conditionals.R | 8 R/apollo_dVdB.R | 4 R/apollo_deltaMethod.R | 236 +++- R/apollo_detach.R | 40 R/apollo_dft.R | 1871 ++++++++++++++++++------------------- R/apollo_diagnostics.R | 45 R/apollo_drugChoiceData.R | 116 +- R/apollo_el.R | 57 - R/apollo_estimate.R | 370 +++---- R/apollo_estimateHB.R | 764 +++++++-------- R/apollo_expandLoop.R | 54 - R/apollo_firstRow.R | 2 R/apollo_fitsTest.R | 8 R/apollo_fmnl.R | 73 - R/apollo_initialise.R | 32 R/apollo_insertComponentName.R | 11 R/apollo_insertFunc.R | 32 R/apollo_insertRows.R | 8 R/apollo_insertScaling.R | 7 R/apollo_keepRows.R | 4 R/apollo_lc.R | 637 ++++++------ R/apollo_lcConditionals.R | 6 R/apollo_lcEM.R | 32 R/apollo_lcUnconditionals.R | 11 R/apollo_llCalc.R | 8 R/apollo_loadModel.R | 64 - R/apollo_lrTest.R | 12 R/apollo_makeCluster.R | 6 R/apollo_makeDraws.R | 6 R/apollo_makeGrad.R | 14 R/apollo_makeLogLike.R | 51 - R/apollo_mdcev.R | 67 - R/apollo_mdcev2.R | 59 - R/apollo_mdcnev.R | 70 - R/apollo_mixEM.R | 33 R/apollo_mlhs.R | 8 R/apollo_mnl.R | 68 - R/apollo_modeChoiceData.R | 16 R/apollo_modelOutput.R | 52 - R/apollo_nl.R | 61 - R/apollo_normalDensity.R | 468 ++++----- R/apollo_ol.R | 75 - R/apollo_op.R | 79 - R/apollo_outOfSample.R | 36 R/apollo_panelProd.R | 14 R/apollo_prediction.R | 40 R/apollo_prepareProb.R | 324 +++--- R/apollo_preprocess.R | 72 - R/apollo_print.R | 2 R/apollo_readBeta.R | 2 R/apollo_saveOutput.R | 148 +- R/apollo_searchStart.R | 39 R/apollo_setRows.R | 4 R/apollo_sharesTest.R | 22 R/apollo_sink.R | 2 R/apollo_speedTest.R | 20 R/apollo_swissRouteChoiceData.R | 72 - R/apollo_timeUseData.R | 74 - R/apollo_unconditionals.R | 10 R/apollo_validate.R | 57 - R/apollo_validateControl.R | 36 R/apollo_validateData.R | 7 R/apollo_validateHBControl.R | 54 - R/apollo_validateInputs.R | 572 +++++------ R/apollo_varList.R | 300 +++-- R/apollo_varcov.R | 723 +++++++------- R/apollo_weighting.R | 21 R/apollo_writeF12.R | 5 R/apollo_writeTheta.R | 4 R/onAttach.R | 8 R/output |only build/vignette.rds |binary inst/doc/apollofirstexample.html | 1151 +++++++++++++--------- man/apollo_addCovariance.Rd | 4 man/apollo_attach.Rd | 4 man/apollo_avgInterDraws.Rd | 6 man/apollo_avgIntraDraws.Rd | 5 man/apollo_basTest.Rd | 10 man/apollo_bootstrap.Rd | 50 man/apollo_checkArguments.Rd | 15 man/apollo_choiceAnalysis.Rd | 26 man/apollo_classAlloc.Rd | 28 man/apollo_cnl.Rd | 63 - man/apollo_combineModels.Rd | 7 man/apollo_combineResults.Rd | 22 man/apollo_compareInputs.Rd | 8 man/apollo_conditionals.Rd | 8 man/apollo_dVdB.Rd | 4 man/apollo_deltaMethod.Rd | 61 - man/apollo_detach.Rd | 2 man/apollo_dft.Rd | 83 - man/apollo_diagnostics.Rd | 6 man/apollo_drugChoiceData.Rd | 56 - man/apollo_el.Rd | 50 man/apollo_estimate.Rd | 75 - man/apollo_estimateHB.Rd | 51 - man/apollo_expandLoop.Rd | 2 man/apollo_firstRow.Rd | 2 man/apollo_fitsTest.Rd | 8 man/apollo_fmnl.Rd | 44 man/apollo_insertFunc.Rd | 8 man/apollo_insertRows.Rd | 8 man/apollo_keepRows.Rd | 4 man/apollo_lc.Rd | 41 man/apollo_lcConditionals.Rd | 6 man/apollo_lcEM.Rd | 22 man/apollo_lcUnconditionals.Rd | 13 man/apollo_llCalc.Rd | 8 man/apollo_loadModel.Rd | 4 man/apollo_lrTest.Rd | 4 man/apollo_makeCluster.Rd | 6 man/apollo_makeDraws.Rd | 6 man/apollo_makeGrad.Rd | 12 man/apollo_makeLogLike.Rd | 6 man/apollo_mdcev.Rd | 59 - man/apollo_mdcev2.Rd | 59 - man/apollo_mdcnev.Rd | 57 - man/apollo_mixEM.Rd | 49 man/apollo_mlhs.Rd | 8 man/apollo_mnl.Rd | 43 man/apollo_modeChoiceData.Rd | 16 man/apollo_modelOutput.Rd | 24 man/apollo_nl.Rd | 59 - man/apollo_normalDensity.Rd | 52 - man/apollo_ol.Rd | 48 man/apollo_op.Rd | 50 man/apollo_outOfSample.Rd | 20 man/apollo_panelProd.Rd | 14 man/apollo_prediction.Rd | 20 man/apollo_prepareProb.Rd | 6 man/apollo_preprocess.Rd | 20 man/apollo_print.Rd | 2 man/apollo_readBeta.Rd | 2 man/apollo_saveOutput.Rd | 50 man/apollo_searchStart.Rd | 32 man/apollo_setRows.Rd | 4 man/apollo_sharesTest.Rd | 22 man/apollo_sink.Rd | 2 man/apollo_speedTest.Rd | 20 man/apollo_swissRouteChoiceData.Rd | 8 man/apollo_timeUseData.Rd | 6 man/apollo_unconditionals.Rd | 10 man/apollo_validate.Rd | 20 man/apollo_validateControl.Rd | 32 man/apollo_validateData.Rd | 7 man/apollo_validateHBControl.Rd | 39 man/apollo_validateInputs.Rd | 103 +- man/apollo_varList.Rd | 16 man/apollo_varcov.Rd | 72 - man/apollo_weighting.Rd | 21 man/apollo_writeF12.Rd | 4 man/apollo_writeTheta.Rd | 6 src/RcppExports.cpp | 5 169 files changed, 6588 insertions(+), 5849 deletions(-)
Title: Creates Statistical Reports
Description: Contains functions to create regulatory-style statistical reports.
Originally designed to create tables, listings, and figures for the
pharmaceutical, biotechnology, and medical device industries, these
reports are generalized enough that they could be used in any industry.
Generates text, rich-text, PDF and HTML file formats. The package specializes
in printing wide and long tables with automatic page wrapping and splitting.
Reports can be produced with a minimum of function calls, and without
relying on other table packages. The package supports titles, footnotes,
page header, page footers, spanning headers, page by variables,
and automatic page numbering.
Author: David Bosak [aut, cre],
Kevin Kramer [ctb],
Archytas Clinical Solutions [cph]
Maintainer: David Bosak <dbosak01@gmail.com>
Diff between reporter versions 1.2.8 dated 2021-12-10 and 1.2.9 dated 2022-01-26
reporter-1.2.8/reporter/tests/testthat/rtf/test10.rtf |only reporter-1.2.8/reporter/tests/testthat/rtf/test11.rtf |only reporter-1.2.8/reporter/tests/testthat/rtf/test18.rtf |only reporter-1.2.8/reporter/tests/testthat/rtf/test19.rtf |only reporter-1.2.8/reporter/tests/testthat/rtf/test23.rtf |only reporter-1.2.8/reporter/tests/testthat/rtf/test24.rtf |only reporter-1.2.8/reporter/tests/testthat/rtf/test27.rtf |only reporter-1.2.8/reporter/tests/testthat/rtf/test29.rtf |only reporter-1.2.8/reporter/tests/testthat/rtf/test30.rtf |only reporter-1.2.8/reporter/tests/testthat/rtf/test9.rtf |only reporter-1.2.8/reporter/tests/testthat/rtf2/test25.rtf |only reporter-1.2.8/reporter/tests/testthat/rtf2/test26.rtf |only reporter-1.2.8/reporter/tests/testthat/rtf2/test29.rtf |only reporter-1.2.8/reporter/tests/testthat/rtf2/test30.rtf |only reporter-1.2.9/reporter/DESCRIPTION | 6 reporter-1.2.9/reporter/MD5 | 66 - reporter-1.2.9/reporter/NEWS.md | 6 reporter-1.2.9/reporter/R/create_table_pdf.R | 133 +- reporter-1.2.9/reporter/R/page_template_pdf.R | 300 ++--- reporter-1.2.9/reporter/R/plot_spec.R | 596 +++++----- reporter-1.2.9/reporter/R/text_spec.R | 38 reporter-1.2.9/reporter/R/write_pdf.R | 2 reporter-1.2.9/reporter/man/create_plot.Rd | 13 reporter-1.2.9/reporter/tests/testthat/html/images/test20-IRS9.jpg |only reporter-1.2.9/reporter/tests/testthat/html/test20.html |only reporter-1.2.9/reporter/tests/testthat/html/test20.jpg |only reporter-1.2.9/reporter/tests/testthat/rtf2/user1.rtf |only reporter-1.2.9/reporter/tests/testthat/rtf2/user2.rtf |only reporter-1.2.9/reporter/tests/testthat/rtf2/user5.rtf |only reporter-1.2.9/reporter/tests/testthat/test-create_table_pdf.R | 4 reporter-1.2.9/reporter/tests/testthat/test-html.R | 37 reporter-1.2.9/reporter/tests/testthat/test-page_template_pdf.R | 150 -- reporter-1.2.9/reporter/tests/testthat/test-pdf.R | 35 reporter-1.2.9/reporter/tests/testthat/test-pdf2.R | 147 +- reporter-1.2.9/reporter/tests/testthat/test-rtf.R | 39 reporter-1.2.9/reporter/tests/testthat/test-rtf2.R | 37 reporter-1.2.9/reporter/tests/testthat/test-write_pdf.R | 2 reporter-1.2.9/reporter/tests/testthat/user/user1.pdf | 4 reporter-1.2.9/reporter/tests/testthat/user/user12.rtf | 2 reporter-1.2.9/reporter/tests/testthat/user/user13.rtf | 2 reporter-1.2.9/reporter/tests/testthat/user/user14.rtf | 2 reporter-1.2.9/reporter/tests/testthat/user/user3.pdf | 4 reporter-1.2.9/reporter/tests/testthat/user/user4.pdf | 4 reporter-1.2.9/reporter/tests/testthat/user/user6.pdf | 4 44 files changed, 950 insertions(+), 683 deletions(-)
Title: MCMC Generalised Linear Mixed Models
Description: Fits Multivariate Generalised Linear Mixed Models (and related models) using Markov chain Monte Carlo techniques (Hadfield 2010 J. Stat. Soft.).
Author: Jarrod Hadfield
Maintainer: Jarrod Hadfield <j.hadfield@ed.ac.uk>
Diff between MCMCglmm versions 2.32 dated 2021-03-12 and 2.33 dated 2022-01-26
MCMCglmm-2.32/MCMCglmm/build |only MCMCglmm-2.32/MCMCglmm/inst/doc |only MCMCglmm-2.32/MCMCglmm/vignettes |only MCMCglmm-2.33/MCMCglmm/DESCRIPTION | 10 +- MCMCglmm-2.33/MCMCglmm/MD5 | 114 ++-------------------------- MCMCglmm-2.33/MCMCglmm/R/MCMCglmm.R | 2 MCMCglmm-2.33/MCMCglmm/R/predict.MCMCglmm.R | 9 +- MCMCglmm-2.33/MCMCglmm/R/priorformat.R | 10 +- MCMCglmm-2.33/MCMCglmm/src/MCMCglmm.cc | 31 ++++++- MCMCglmm-2.33/MCMCglmm/src/cs.h | 1 MCMCglmm-2.33/MCMCglmm/src/cs_chol.c | 11 ++ MCMCglmm-2.33/MCMCglmm/src/cs_directsum.c | 4 MCMCglmm-2.33/MCMCglmm/src/cs_kroneckerI.c | 4 MCMCglmm-2.33/MCMCglmm/src/cs_malloc.c | 14 +-- MCMCglmm-2.33/MCMCglmm/src/cs_multiply.c | 2 MCMCglmm-2.33/MCMCglmm/src/cs_schol.c | 4 16 files changed, 81 insertions(+), 135 deletions(-)
Title: An L1-Version of the Spectral Clustering
Description: Provides an l1-version of the spectral clustering algorithm devoted to robustly clustering highly perturbed graphs using l1-penalty. This algorithm is described with more details in the preprint C. Champion, M. Champion, M. Blazère, R. Burcelin and J.M. Loubes, "l1-spectral clustering algorithm: a spectral clustering method using l1-regularization" (2022).
Author: Camille Champion [aut],
Magali Champion [aut, cre]
Maintainer: Magali Champion <magali.champion@u-paris.fr>
Diff between l1spectral versions 0.99.5 dated 2022-01-04 and 0.99.6 dated 2022-01-26
DESCRIPTION | 8 ++-- MD5 | 12 +++--- R/FindNbrClusters.R | 78 +++++++++++++++++++++++++++++++++++-------- R/l1_spectralclustering.R | 6 ++- build/partial.rdb |binary man/FindNbrClusters.Rd | 4 +- man/l1_spectralclustering.Rd | 11 +++++- 7 files changed, 91 insertions(+), 28 deletions(-)
Title: Connect to 'AWS Athena' using 'Boto3' ('DBI' Interface)
Description: Designed to be compatible with the R package 'DBI' (Database Interface)
when connecting to Amazon Web Service ('AWS') Athena <https://aws.amazon.com/athena/>.
To do this 'Python' 'Boto3' Software Development Kit ('SDK')
<https://boto3.amazonaws.com/v1/documentation/api/latest/index.html> is used as a driver.
Author: Dyfan Jones [aut, cre]
Maintainer: Dyfan Jones <dyfan.r.jones@gmail.com>
Diff between RAthena versions 2.5.0 dated 2022-01-17 and 2.5.1 dated 2022-01-26
DESCRIPTION | 6 MD5 | 22 +- NEWS.md | 4 build/vignette.rds |binary inst/doc/aws_athena_query_caching.html | 232 ++++++++++++++++++++++++- inst/doc/aws_athena_unload.html | 251 ++++++++++++++++++++++++++- inst/doc/aws_s3_backend.html | 242 +++++++++++++++++++++++++- inst/doc/changing_backend_file_parser.html | 221 +++++++++++++++++++++++- inst/doc/convert_and_save_cost.html | 265 +++++++++++++++++++++++++++-- inst/doc/getting_started.html | 252 ++++++++++++++++++++++++++- inst/doc/how_to_retry.html | 235 ++++++++++++++++++++++++- tests/testthat/test-file-parser.R | 2 12 files changed, 1634 insertions(+), 98 deletions(-)
Title: Methods for Pooling P-Values from (Dependent) Tests
Description: Functions for pooling/combining the results (i.e., p-values) from (dependent) hypothesis tests. Included are Fisher's method, Stouffer's method, the inverse chi-square method, the Bonferroni method, Tippett's method, and the binomial test. Each method can be adjusted based on an estimate of the effective number of tests or using empirically derived null distribution using pseudo replicates. For Fisher's, Stouffer's, and the inverse chi-square method, direct generalizations based on multivariate theory are also available (leading to Brown's method, Strube's method, and the generalized inverse chi-square method). An introduction can be found in Cinar and Viechtbauer (2022) <doi:10.18637/jss.v101.i01>.
Author: Ozan Cinar [aut, cre] (<https://orcid.org/0000-0003-0329-1977>),
Wolfgang Viechtbauer [aut] (<https://orcid.org/0000-0003-3463-4063>)
Maintainer: Ozan Cinar <ozancinar86@gmail.com>
Diff between poolr versions 1.0-0 dated 2021-06-16 and 1.1-1 dated 2022-01-26
DESCRIPTION | 10 +++++----- MD5 | 29 +++++++++++++++-------------- NEWS.md | 4 ++++ README.md | 4 ++-- build/poolr.pdf |binary inst |only man/binomtest.Rd | 2 ++ man/bonferroni.Rd | 2 ++ man/empirical.Rd | 2 ++ man/fisher.Rd | 2 ++ man/invchisq.Rd | 2 ++ man/meff.Rd | 2 ++ man/mvnconv.Rd | 3 +++ man/poolr-package.Rd | 2 ++ man/stouffer.Rd | 2 ++ man/tippett.Rd | 2 ++ 16 files changed, 47 insertions(+), 21 deletions(-)
Title: Connect to 'AWS Athena' using R 'AWS SDK' 'paws' ('DBI'
Interface)
Description: Designed to be compatible with the 'R' package 'DBI' (Database Interface)
when connecting to Amazon Web Service ('AWS') Athena <https://aws.amazon.com/athena/>.
To do this the 'R' 'AWS' Software Development Kit ('SDK') 'paws'
<https://github.com/paws-r/paws> is used as a driver.
Author: Dyfan Jones [aut, cre]
Maintainer: Dyfan Jones <dyfan.r.jones@gmail.com>
Diff between noctua versions 2.5.0 dated 2022-01-17 and 2.5.1 dated 2022-01-26
DESCRIPTION | 6 MD5 | 22 +- NEWS.md | 4 build/vignette.rds |binary inst/doc/aws_athena_query_caching.html | 232 ++++++++++++++++++++++++- inst/doc/aws_athena_unload.html | 250 +++++++++++++++++++++++++-- inst/doc/aws_s3_backend.html | 239 +++++++++++++++++++++++++- inst/doc/changing_backend_file_parser.html | 221 +++++++++++++++++++++++- inst/doc/convert_and_save_cost.html | 265 +++++++++++++++++++++++++++-- inst/doc/getting_started.html | 237 ++++++++++++++++++++++++- inst/doc/how_to_retry.html | 235 ++++++++++++++++++++++++- tests/testthat/test-file-parser.R | 2 12 files changed, 1619 insertions(+), 94 deletions(-)
Title: Easy Data Wrangling
Description: A lightweight package to easily manipulate, clean, transform,
and prepare your data for analysis. It also forms the data wrangling
backend for the packages in the 'easystats' ecosystem.
Author: Dominique Makowski [aut] (<https://orcid.org/0000-0001-5375-9967>,
@Dom_Makowski),
Daniel Lüdecke [aut] (<https://orcid.org/0000-0002-8895-3206>,
@strengejacke),
Indrajeet Patil [aut, cre] (<https://orcid.org/0000-0003-1995-6531>,
@patilindrajeets),
Mattan S. Ben-Shachar [aut] (<https://orcid.org/0000-0002-4287-4801>),
Brenton M. Wiernik [aut] (<https://orcid.org/0000-0001-9560-6336>,
@bmwiernik)
Maintainer: Indrajeet Patil <patilindrajeet.science@gmail.com>
Diff between datawizard versions 0.2.2 dated 2022-01-04 and 0.2.3 dated 2022-01-26
datawizard-0.2.2/datawizard/R/utils_sjmisc.R |only datawizard-0.2.3/datawizard/DESCRIPTION | 6 datawizard-0.2.3/datawizard/MD5 | 43 - datawizard-0.2.3/datawizard/NAMESPACE | 3 datawizard-0.2.3/datawizard/NEWS.md | 7 datawizard-0.2.3/datawizard/R/compact_character.R |only datawizard-0.2.3/datawizard/R/convert_data_to_numeric.R | 3 datawizard-0.2.3/datawizard/R/standardize.R | 8 datawizard-0.2.3/datawizard/R/unstandardize.R | 10 datawizard-0.2.3/datawizard/R/utils_data.R | 8 datawizard-0.2.3/datawizard/R/utils_list.R |only datawizard-0.2.3/datawizard/R/utils_misc.R |only datawizard-0.2.3/datawizard/R/utils_strings.R |only datawizard-0.2.3/datawizard/inst/doc/demean.html | 315 +++++++--- datawizard-0.2.3/datawizard/inst/doc/standardize_data.R | 6 datawizard-0.2.3/datawizard/inst/doc/standardize_data.Rmd | 6 datawizard-0.2.3/datawizard/inst/doc/standardize_data.html | 140 +++- datawizard-0.2.3/datawizard/man/compact_character.Rd |only datawizard-0.2.3/datawizard/man/compact_list.Rd |only datawizard-0.2.3/datawizard/man/convert_data_to_numeric.Rd | 11 datawizard-0.2.3/datawizard/man/is_empty_object.Rd |only datawizard-0.2.3/datawizard/man/standardize.Rd | 49 - datawizard-0.2.3/datawizard/tests/testthat/_snaps/winsorization.md | 10 datawizard-0.2.3/datawizard/tests/testthat/test-compact-character.R |only datawizard-0.2.3/datawizard/tests/testthat/test-compact-list.R |only datawizard-0.2.3/datawizard/tests/testthat/test-is-empty-object.R |only datawizard-0.2.3/datawizard/tests/testthat/test-winsorization.R | 2 datawizard-0.2.3/datawizard/vignettes/standardize_data.Rmd | 6 28 files changed, 442 insertions(+), 191 deletions(-)
Title: Tools for Assessing Clustering
Description: A set of tools for evaluating clustering robustness using
proportion of ambiguously clustered pairs (Senbabaoglu et al. (2014)
<doi:10.1038/srep06207>), as well as similarity across methods
and method stability using element-centric clustering comparison (Gates et
al. (2019) <doi:10.1038/s41598-019-44892-y>). Additionally, this package
enables stability-based parameter assessment for graph-based clustering
pipelines typical in single-cell data analysis.
Author: Arash Shahsavari [aut, cre],
Andi Munteanu [aut],
Irina Mohorianu [aut]
Maintainer: Arash Shahsavari <as3006@cam.ac.uk>
Diff between ClustAssess versions 0.1.0 dated 2021-03-31 and 0.3.0 dated 2022-01-26
ClustAssess-0.1.0/ClustAssess/man/element_frustration.Rd |only ClustAssess-0.3.0/ClustAssess/DESCRIPTION | 31 ClustAssess-0.3.0/ClustAssess/MD5 | 78 ClustAssess-0.3.0/ClustAssess/NAMESPACE | 24 ClustAssess-0.3.0/ClustAssess/R/ECS.R | 1309 ++++++++-- ClustAssess-0.3.0/ClustAssess/R/PAC.R | 39 ClustAssess-0.3.0/ClustAssess/R/marker-overlap.R | 33 ClustAssess-0.3.0/ClustAssess/R/stability-based-parameter-assessment.R |only ClustAssess-0.3.0/ClustAssess/README.md | 91 ClustAssess-0.3.0/ClustAssess/build/vignette.rds |binary ClustAssess-0.3.0/ClustAssess/inst/doc/ClustAssess.R | 23 ClustAssess-0.3.0/ClustAssess/inst/doc/ClustAssess.Rmd | 25 ClustAssess-0.3.0/ClustAssess/inst/doc/ClustAssess.html | 657 +++-- ClustAssess-0.3.0/ClustAssess/inst/doc/comparing-soft-and-hierarchical.R | 17 ClustAssess-0.3.0/ClustAssess/inst/doc/comparing-soft-and-hierarchical.Rmd | 18 ClustAssess-0.3.0/ClustAssess/inst/doc/comparing-soft-and-hierarchical.html | 599 +++- ClustAssess-0.3.0/ClustAssess/man/Clustering-class.Rd | 8 ClustAssess-0.3.0/ClustAssess/man/consensus_cluster.Rd | 5 ClustAssess-0.3.0/ClustAssess/man/create_clustering.Rd | 25 ClustAssess-0.3.0/ClustAssess/man/element_agreement.Rd | 63 ClustAssess-0.3.0/ClustAssess/man/element_consistency.Rd |only ClustAssess-0.3.0/ClustAssess/man/element_sim.Rd | 87 ClustAssess-0.3.0/ClustAssess/man/element_sim_elscore.Rd | 89 ClustAssess-0.3.0/ClustAssess/man/element_sim_matrix.Rd | 56 ClustAssess-0.3.0/ClustAssess/man/figures |only ClustAssess-0.3.0/ClustAssess/man/get_clustering_difference.Rd |only ClustAssess-0.3.0/ClustAssess/man/get_feature_stability.Rd |only ClustAssess-0.3.0/ClustAssess/man/get_nn_conn_comps.Rd |only ClustAssess-0.3.0/ClustAssess/man/get_nn_importance.Rd |only ClustAssess-0.3.0/ClustAssess/man/get_resolution_importance.Rd |only ClustAssess-0.3.0/ClustAssess/man/length-Clustering-method.Rd | 6 ClustAssess-0.3.0/ClustAssess/man/marker_overlap.Rd | 24 ClustAssess-0.3.0/ClustAssess/man/merge_partitions.Rd |only ClustAssess-0.3.0/ClustAssess/man/merge_resolutions.Rd |only ClustAssess-0.3.0/ClustAssess/man/pac_convergence.Rd | 4 ClustAssess-0.3.0/ClustAssess/man/pac_landscape.Rd | 7 ClustAssess-0.3.0/ClustAssess/man/plot_clustering_difference_boxplot.Rd |only ClustAssess-0.3.0/ClustAssess/man/plot_clustering_difference_facet.Rd |only ClustAssess-0.3.0/ClustAssess/man/plot_connected_comps_evolution.Rd |only ClustAssess-0.3.0/ClustAssess/man/plot_feature_stability_boxplot.Rd |only ClustAssess-0.3.0/ClustAssess/man/plot_feature_stability_ecs_facet.Rd |only ClustAssess-0.3.0/ClustAssess/man/plot_feature_stability_ecs_incremental.Rd |only ClustAssess-0.3.0/ClustAssess/man/plot_feature_stability_mb_facet.Rd |only ClustAssess-0.3.0/ClustAssess/man/plot_k_n_partitions.Rd |only ClustAssess-0.3.0/ClustAssess/man/plot_k_resolution_corresp.Rd |only ClustAssess-0.3.0/ClustAssess/man/plot_n_neigh_ecs.Rd |only ClustAssess-0.3.0/ClustAssess/man/plot_n_neigh_k_correspondence.Rd |only ClustAssess-0.3.0/ClustAssess/man/print-Clustering-method.Rd | 6 ClustAssess-0.3.0/ClustAssess/src/RcppExports.cpp | 5 ClustAssess-0.3.0/ClustAssess/vignettes/ClustAssess.Rmd | 25 ClustAssess-0.3.0/ClustAssess/vignettes/comparing-soft-and-hierarchical.Rmd | 18 51 files changed, 2539 insertions(+), 833 deletions(-)
Title: Model and Solve Mixed Integer Linear Programs
Description: Model mixed integer linear programs in an algebraic way directly in R.
The model is solver-independent and thus offers the possibility
to solve a model with different solvers. It currently only supports
linear constraints and objective functions. See the 'ompr'
website <https://dirkschumacher.github.io/ompr/> for more information,
documentation and examples.
Author: Dirk Schumacher [aut, cre]
Maintainer: Dirk Schumacher <mail@dirk-schumacher.net>
Diff between ompr versions 1.0.0 dated 2022-01-26 and 1.0.1 dated 2022-01-26
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NAMESPACE | 1 + NEWS.md | 6 ++++++ R/solution-api.R | 1 + 5 files changed, 15 insertions(+), 7 deletions(-)
Title: A Forward-Pipe Operator for R
Description: Provides a mechanism for chaining commands with a
new forward-pipe operator, %>%. This operator will forward a value, or
the result of an expression, into the next function call/expression.
There is flexible support for the type of right-hand side expressions.
For more information, see package vignette. To quote Rene Magritte,
"Ceci n'est pas un pipe."
Author: Stefan Milton Bache [aut, cph] (Original author and creator of
magrittr),
Hadley Wickham [aut],
Lionel Henry [cre],
RStudio [cph, fnd]
Maintainer: Lionel Henry <lionel@rstudio.com>
Diff between magrittr versions 2.0.1 dated 2020-11-17 and 2.0.2 dated 2022-01-26
DESCRIPTION | 9 MD5 | 24 - NAMESPACE | 1 NEWS.md | 9 R/debug_pipe.R | 1 R/pipe.R | 65 ++++ README.md | 2 build/vignette.rds |binary inst/doc/magrittr.html | 385 ++++-------------------- inst/doc/tradeoffs.html | 699 ++++++++++++++------------------------------- man/pipe-eager.Rd |only src/pipe.c | 6 tests/testthat/_snaps |only tests/testthat/test-pipe.R | 21 + 14 files changed, 422 insertions(+), 800 deletions(-)
Title: Read/Write Files in Key-Value-Hierarchy Format
Description: The format KVH is a lightweight format that can be read/written both by humans and machines.
It can be useful in situations where XML or alike formats seem to be an overkill.
We provide an ability to parse KVH files in R pretty fast due to 'Rcpp' use.
Author: Serguei Sokol
Maintainer: Serguei Sokol <sokol@insa-toulouse.fr>
Diff between kvh versions 1.4.1 dated 2019-04-29 and 1.4.2 dated 2022-01-26
kvh-1.4.1/kvh/tests/testthat/res.RData |only kvh-1.4.2/kvh/DESCRIPTION | 11 ++++++----- kvh-1.4.2/kvh/MD5 | 15 +++++++-------- kvh-1.4.2/kvh/NEWS | 8 +++++++- kvh-1.4.2/kvh/R/kvh.R | 12 ++++++++---- kvh-1.4.2/kvh/man/kvh_get_matrix.Rd | 2 ++ kvh-1.4.2/kvh/man/kvh_read.Rd | 10 ++++++++-- kvh-1.4.2/kvh/man/obj2kvh.Rd | 2 ++ kvh-1.4.2/kvh/src/RcppExports.cpp | 5 +++++ 9 files changed, 45 insertions(+), 20 deletions(-)
Title: Advanced and Fast Data Transformation
Description: A C/C++ based package for advanced data transformation and
statistical computing in R that is extremely fast, flexible and
parsimonious to code with, class-agnostic and programmer friendly.
It is well integrated with base R, 'dplyr' / (grouped) 'tibble',
'data.table', 'plm' (panel-series and data frames), 'sf' data frames, and
non-destructively handles other matrix or data frame based classes (such as
'ts', 'xts' / 'zoo', 'timeSeries', 'tsibble', 'tibbletime' etc.)
--- Key Features: ---
(1) Advanced statistical programming: A full set of fast statistical functions
supporting grouped and weighted computations on vectors, matrices and
data frames. Fast and programmable grouping, ordering, unique values / rows,
factor generation and interactions. Fast and flexible functions for data
manipulation, data object conversions, and memory efficient R programming.
(2) Advanced aggregation: Fast and easy multi-data-type, multi-function,
weighted, parallelized and fully custom data aggregation.
(3) Advanced transformations: Fast row / column arithmetic, (grouped) replacing
and sweeping out of statistics, (grouped, weighted) scaling / standardizing,
between (averaging) and (quasi-)within (demeaning) transformations,
higher-dimensional centering (i.e. multiple fixed effects or polynomials),
linear prediction, model fitting and testing exclusion restrictions.
(4) Advanced time-computations: Fast (sequences of) lags / leads, and
(lagged / leaded, iterated, quasi-, log-) differences and (compounded)
growth rates on (irregular) time series and panel data.
Multivariate auto-, partial- and cross-correlation functions for panel data.
Panel data to (ts-)array conversions.
(5) List processing: (Recursive) list search, splitting,
extraction / subsetting, data-apply, and generalized recursive
row-binding / unlisting in 2D.
(6) Advanced data exploration: Fast (grouped, weighted, panel-decomposed)
summary statistics for complex multilevel / panel data.
Author: Sebastian Krantz [aut, cre],
Matt Dowle [ctb],
Arun Srinivasan [ctb],
Morgan Jacob [ctb],
Dirk Eddelbuettel [ctb],
Laurent Berge [ctb],
Kevin Tappe [ctb],
R Core Team and contributors worldwide [ctb],
Martyn Plummer [cph],
1999-2016 The R Core Team [cph]
Maintainer: Sebastian Krantz <sebastian.krantz@graduateinstitute.ch>
Diff between collapse versions 1.7.2 dated 2022-01-22 and 1.7.3 dated 2022-01-26
collapse-1.7.2/collapse/R/fhdbetween_fhdwithin.R |only collapse-1.7.2/collapse/man/fhdbetween_fhdwithin.Rd |only collapse-1.7.2/collapse/man/pwcor_pwcov_pwnobs.Rd |only collapse-1.7.2/collapse/src/fndistinct.cpp |only collapse-1.7.3/collapse/DESCRIPTION | 16 - collapse-1.7.3/collapse/MD5 | 106 +++++------ collapse-1.7.3/collapse/NEWS.md | 14 + collapse-1.7.3/collapse/R/GRP.R | 66 +++++- collapse-1.7.3/collapse/R/RcppExports.R | 24 +- collapse-1.7.3/collapse/R/fHDbetween_fHDwithin.R |only collapse-1.7.3/collapse/R/fbetween_fwithin.R | 20 +- collapse-1.7.3/collapse/R/fcumsum.R | 4 collapse-1.7.3/collapse/R/fdiff_fgrowth.R | 10 - collapse-1.7.3/collapse/R/flag.R | 6 collapse-1.7.3/collapse/R/fscale.R | 10 - collapse-1.7.3/collapse/R/fsubset_ftransform.R | 6 collapse-1.7.3/collapse/R/fsummarise.R | 2 collapse-1.7.3/collapse/R/psacf.R | 8 collapse-1.7.3/collapse/R/psmat.R | 4 collapse-1.7.3/collapse/R/qsu.R | 4 collapse-1.7.3/collapse/R/recode_replace.R | 2 collapse-1.7.3/collapse/R/small_helper.R | 9 collapse-1.7.3/collapse/R/varying.R | 4 collapse-1.7.3/collapse/inst/doc/collapse_documentation.Rmd | 12 - collapse-1.7.3/collapse/inst/doc/collapse_documentation.html | 15 - collapse-1.7.3/collapse/man/GRP.Rd | 11 - collapse-1.7.3/collapse/man/colorder.Rd | 3 collapse-1.7.3/collapse/man/fHDbetween_fHDwithin.Rd |only collapse-1.7.3/collapse/man/fmode.Rd | 4 collapse-1.7.3/collapse/man/funique.Rd | 2 collapse-1.7.3/collapse/man/pwcor_pwcov_pwNobs.Rd |only collapse-1.7.3/collapse/man/qsu.Rd | 40 +++- collapse-1.7.3/collapse/man/small-helper.Rd | 8 collapse-1.7.3/collapse/src/ExportSymbols.cpp | 2 collapse-1.7.3/collapse/src/RcppExports.cpp | 94 ++++----- collapse-1.7.3/collapse/src/TRA.cpp | 19 + collapse-1.7.3/collapse/src/data.table_subset.c | 27 +- collapse-1.7.3/collapse/src/fNdistinct.cpp |only collapse-1.7.3/collapse/src/fbetween_fwithin.cpp | 24 +- collapse-1.7.3/collapse/src/fbstats.cpp | 8 collapse-1.7.3/collapse/src/fcumsum.c | 6 collapse-1.7.3/collapse/src/fdiff_fgrowth.cpp | 26 +- collapse-1.7.3/collapse/src/ffirst.c | 2 collapse-1.7.3/collapse/src/flag.cpp | 54 ++--- collapse-1.7.3/collapse/src/fmean.cpp | 32 +-- collapse-1.7.3/collapse/src/fmode.cpp | 30 +-- collapse-1.7.3/collapse/src/fnth_fmedian.cpp | 18 - collapse-1.7.3/collapse/src/fprod.cpp | 20 +- collapse-1.7.3/collapse/src/fscale.cpp | 28 +- collapse-1.7.3/collapse/src/fvar_fsd.cpp | 16 - collapse-1.7.3/collapse/src/handle_attributes.c | 18 + collapse-1.7.3/collapse/src/qF_qG.cpp | 2 collapse-1.7.3/collapse/src/small_helper.c | 49 +++-- collapse-1.7.3/collapse/src/varying.cpp | 2 collapse-1.7.3/collapse/tests/testthat/test-GRP.R | 13 + collapse-1.7.3/collapse/tests/testthat/test-collap.R | 2 collapse-1.7.3/collapse/tests/testthat/test-fmutate.R | 1 collapse-1.7.3/collapse/vignettes/collapse_documentation.Rmd | 12 - 58 files changed, 532 insertions(+), 383 deletions(-)
Title: Qualitative Comparative Analysis
Description: An extensive set of functions to perform Qualitative Comparative Analysis:
crisp sets ('csQCA'), temporal ('tQCA'), multi-value ('mvQCA')
and fuzzy sets ('fsQCA'), using a GUI - graphical user interface.
'QCA' is a methodology that bridges the qualitative and quantitative divide
in social science research. It uses a Boolean algorithm, resulting in a
minimal causal configuration that explains a given phenomenon.
Author: Adrian Dusa [aut, cre, cph] (<https://orcid.org/0000-0002-3525-9253>),
Ciprian Paduraru [ctb] (<https://orcid.org/0000-0002-4518-374X>),
jQuery Foundation [cph] (jQuery library and jQuery UI library),
jQuery contributors [ctb, cph] (jQuery library; authors listed in
inst/gui/www/lib/jquery-AUTHORS.txt),
lp_solve [cph] (http://lpsolve.sourceforge.net),
Vasil Dinkov [ctb, cph] (jquery.smartmenus.js library),
Dmitry Baranovskiy [ctb, cph] (raphael.js library),
Emmanuel Quentin [ctb, cph] (raphael.inline_text_editing.js library),
Jimmy Breck-McKye [ctb, cph] (raphael-paragraph.js library),
Alrik Thiem [aut] (from version 1.0-0 up to version 1.1-3)
Maintainer: Adrian Dusa <dusa.adrian@unibuc.ro>
Diff between QCA versions 3.13 dated 2021-09-02 and 3.14 dated 2022-01-26
QCA-3.13/QCA/inst/staticdocs/recode.html |only QCA-3.14/QCA/DESCRIPTION | 10 QCA-3.14/QCA/MD5 | 212 +++++----- QCA-3.14/QCA/NAMESPACE | 1 QCA-3.14/QCA/R/XYplot.R | 8 QCA-3.14/QCA/R/Xplot.R | 6 QCA-3.14/QCA/R/allExpressions.R | 14 QCA-3.14/QCA/R/calibrate.R | 11 QCA-3.14/QCA/R/causalChain.R | 9 QCA-3.14/QCA/R/combint.R | 6 QCA-3.14/QCA/R/complexity.R | 6 QCA-3.14/QCA/R/createMatrix.R | 7 QCA-3.14/QCA/R/dimnames.R | 14 QCA-3.14/QCA/R/findRows.R | 10 QCA-3.14/QCA/R/findSubsets.R | 7 QCA-3.14/QCA/R/findSupersets.R | 7 QCA-3.14/QCA/R/findTh.R | 7 QCA-3.14/QCA/R/findmin.R | 7 QCA-3.14/QCA/R/fuzzyand.R | 6 QCA-3.14/QCA/R/fuzzyor.R | 6 QCA-3.14/QCA/R/generate.R | 6 QCA-3.14/QCA/R/getRow.R | 7 QCA-3.14/QCA/R/getSolution.R | 10 QCA-3.14/QCA/R/makeChart.R | 32 + QCA-3.14/QCA/R/minimize.R | 258 +++++++++---- QCA-3.14/QCA/R/modelFit.R | 21 - QCA-3.14/QCA/R/onAttach.R | 2 QCA-3.14/QCA/R/onUnload.R | 2 QCA-3.14/QCA/R/panel.R | 6 QCA-3.14/QCA/R/pof.R | 127 +++--- QCA-3.14/QCA/R/pofind.R | 12 QCA-3.14/QCA/R/print.R | 66 +++ QCA-3.14/QCA/R/removeRedundants.R | 16 QCA-3.14/QCA/R/replaceCategories.R |only QCA-3.14/QCA/R/retention.R | 9 QCA-3.14/QCA/R/rowDominance.R | 7 QCA-3.14/QCA/R/runGUI.R | 7 QCA-3.14/QCA/R/solveChart.R | 2 QCA-3.14/QCA/R/sortMatrix.R | 7 QCA-3.14/QCA/R/sortVector.R | 7 QCA-3.14/QCA/R/string.R | 2 QCA-3.14/QCA/R/superSubset.R | 59 +- QCA-3.14/QCA/R/truthTable.R | 76 ++- QCA-3.14/QCA/R/verifyQCA.R | 89 ++-- QCA-3.14/QCA/R/writeSolution.R | 7 QCA-3.14/QCA/build/partial.rdb |binary QCA-3.14/QCA/data/HarKem.RData |binary QCA-3.14/QCA/data/d.HK.RData |binary QCA-3.14/QCA/data/d.partybans.RData |binary QCA-3.14/QCA/inst/ChangeLog | 12 QCA-3.14/QCA/inst/gui/server.R | 2 QCA-3.14/QCA/inst/gui/www/js/maincode.js | 4 QCA-3.14/QCA/inst/gui/www/js/utils.js | 2 QCA-3.14/QCA/inst/staticdocs/CV.html | 4 QCA-3.14/QCA/inst/staticdocs/LegacyDatasets.html | 4 QCA-3.14/QCA/inst/staticdocs/Lipset.html | 4 QCA-3.14/QCA/inst/staticdocs/QCA.package.html | 8 QCA-3.14/QCA/inst/staticdocs/RS.html | 4 QCA-3.14/QCA/inst/staticdocs/SOPexpressions.html | 4 QCA-3.14/QCA/inst/staticdocs/XYplot.html | 4 QCA-3.14/QCA/inst/staticdocs/Xplot.html | 4 QCA-3.14/QCA/inst/staticdocs/calibrate.html | 4 QCA-3.14/QCA/inst/staticdocs/causalChain.html | 82 +++- QCA-3.14/QCA/inst/staticdocs/chartFunctions.html | 4 QCA-3.14/QCA/inst/staticdocs/export.html | 4 QCA-3.14/QCA/inst/staticdocs/factorize.html | 4 QCA-3.14/QCA/inst/staticdocs/findRows.html | 4 QCA-3.14/QCA/inst/staticdocs/findTh.html | 4 QCA-3.14/QCA/inst/staticdocs/fuzzyops.html | 4 QCA-3.14/QCA/inst/staticdocs/generate.html | 4 QCA-3.14/QCA/inst/staticdocs/implicantMatrixFunctions.html | 4 QCA-3.14/QCA/inst/staticdocs/index.html | 7 QCA-3.14/QCA/inst/staticdocs/intersection.html | 4 QCA-3.14/QCA/inst/staticdocs/minimize.html | 130 ++---- QCA-3.14/QCA/inst/staticdocs/modelFit.html | 4 QCA-3.14/QCA/inst/staticdocs/negate.html | 4 QCA-3.14/QCA/inst/staticdocs/pof.html | 26 - QCA-3.14/QCA/inst/staticdocs/retention.html | 4 QCA-3.14/QCA/inst/staticdocs/runGUI.html | 4 QCA-3.14/QCA/inst/staticdocs/subsetsAndSupersets.html | 17 QCA-3.14/QCA/inst/staticdocs/truthTable.html | 14 QCA-3.14/QCA/man/QCA-internal.Rd | 1 QCA-3.14/QCA/man/QCA.package.Rd | 4 QCA-3.14/QCA/man/causalChain.Rd | 47 +- QCA-3.14/QCA/man/chartFunctions.Rd | 6 QCA-3.14/QCA/man/generate.Rd | 10 QCA-3.14/QCA/man/minimize.Rd | 48 -- QCA-3.14/QCA/man/modelFit.Rd | 5 QCA-3.14/QCA/man/pof.Rd | 17 QCA-3.14/QCA/man/subsetsAndSupersets.Rd | 5 QCA-3.14/QCA/man/truthTable.Rd | 5 QCA-3.14/QCA/src/CCubes.c | 2 QCA-3.14/QCA/src/QCA.c | 2 QCA-3.14/QCA/src/consistency.c | 2 QCA-3.14/QCA/src/consistent_solution.c | 2 QCA-3.14/QCA/src/find_consistent_models.c | 2 QCA-3.14/QCA/src/find_min.c | 2 QCA-3.14/QCA/src/find_models.c | 2 QCA-3.14/QCA/src/generate_matrix.c | 2 QCA-3.14/QCA/src/lp_lib.c | 4 QCA-3.14/QCA/src/lp_mipbb.c | 2 QCA-3.14/QCA/src/registerDynamicSymbol.c | 2 QCA-3.14/QCA/src/row_dominance.c | 2 QCA-3.14/QCA/src/sort_cols.c | 2 QCA-3.14/QCA/src/sort_matrix.c | 2 QCA-3.14/QCA/src/super_rows.c | 2 QCA-3.14/QCA/src/truthTable.c | 2 QCA-3.14/QCA/src/utils.c | 2 108 files changed, 1066 insertions(+), 697 deletions(-)
Title: Import 'OpenStreetMap' Data as Simple Features or Spatial
Objects
Description: Download and import of 'OpenStreetMap' ('OSM') data as 'sf'
or 'sp' objects. 'OSM' data are extracted from the 'Overpass' web
server (<https://overpass-api.de/>) and processed with very fast 'C++'
routines for return to 'R'.
Author: Mark Padgham [aut, cre],
Bob Rudis [aut],
Robin Lovelace [aut],
Maëlle Salmon [aut],
Andrew Smith [ctb],
James Smith [ctb],
Andrea Gilardi [ctb],
Enrico Spinielli [ctb],
Anthony North [ctb],
Martin Machyna [ctb],
Marcin Kalicinski [ctb, cph] (Author of included RapidXML code),
Finkelstein Noam [ctb, cph] (Author of included stub.R code),
Bartnik Lukasz [ctb, cph] (Author of included stub.R code)
Maintainer: Mark Padgham <mark.padgham@email.com>
Diff between osmdata versions 0.1.8 dated 2021-10-24 and 0.1.9 dated 2022-01-26
osmdata-0.1.8/osmdata/vignettes/osmdata.md |only osmdata-0.1.9/osmdata/DESCRIPTION | 10 - osmdata-0.1.9/osmdata/MD5 | 117 +++++++++-------- osmdata-0.1.9/osmdata/NAMESPACE | 1 osmdata-0.1.9/osmdata/NEWS.md | 17 ++ osmdata-0.1.9/osmdata/R/elevation.R | 1 osmdata-0.1.9/osmdata/R/features.R | 2 osmdata-0.1.9/osmdata/R/get-osmdata.R | 21 ++- osmdata-0.1.9/osmdata/R/getbb.R | 3 osmdata-0.1.9/osmdata/R/opq.R | 92 ++++++++++++- osmdata-0.1.9/osmdata/R/osm-extract.R | 5 osmdata-0.1.9/osmdata/R/osmdata-class.R | 1 osmdata-0.1.9/osmdata/R/osmdata-package.R | 1 osmdata-0.1.9/osmdata/R/overpass-query.R | 27 +-- osmdata-0.1.9/osmdata/R/poly2line.R | 1 osmdata-0.1.9/osmdata/R/reproj.R |only osmdata-0.1.9/osmdata/R/trim-osmdata.R | 17 ++ osmdata-0.1.9/osmdata/R/unique-osmdata.R | 1 osmdata-0.1.9/osmdata/R/utils.R | 13 + osmdata-0.1.9/osmdata/R/zzz.R | 2 osmdata-0.1.9/osmdata/build/vignette.rds |binary osmdata-0.1.9/osmdata/inst/doc/osm-sf-translation.html | 4 osmdata-0.1.9/osmdata/inst/doc/osmdata-sc.html | 4 osmdata-0.1.9/osmdata/inst/doc/osmdata.Rmd | 4 osmdata-0.1.9/osmdata/inst/doc/osmdata.html | 12 - osmdata-0.1.9/osmdata/inst/doc/query-split.R |only osmdata-0.1.9/osmdata/inst/doc/query-split.Rmd |only osmdata-0.1.9/osmdata/inst/doc/query-split.html |only osmdata-0.1.9/osmdata/man/add_osm_feature.Rd | 12 + osmdata-0.1.9/osmdata/man/add_osm_features.Rd | 12 + osmdata-0.1.9/osmdata/man/available_features.Rd | 5 osmdata-0.1.9/osmdata/man/available_tags.Rd | 5 osmdata-0.1.9/osmdata/man/bbox_to_string.Rd | 13 + osmdata-0.1.9/osmdata/man/get_overpass_url.Rd | 4 osmdata-0.1.9/osmdata/man/getbb.Rd | 14 ++ osmdata-0.1.9/osmdata/man/opq.Rd | 13 + osmdata-0.1.9/osmdata/man/opq_around.Rd |only osmdata-0.1.9/osmdata/man/opq_enclosing.Rd | 17 ++ osmdata-0.1.9/osmdata/man/opq_osm_id.Rd | 19 ++ osmdata-0.1.9/osmdata/man/opq_string.Rd | 13 + osmdata-0.1.9/osmdata/man/osm_elevation.Rd | 8 + osmdata-0.1.9/osmdata/man/osm_lines.Rd | 8 + osmdata-0.1.9/osmdata/man/osm_multilines.Rd | 8 + osmdata-0.1.9/osmdata/man/osm_multipolygons.Rd | 8 + osmdata-0.1.9/osmdata/man/osm_points.Rd | 8 + osmdata-0.1.9/osmdata/man/osm_poly2line.Rd | 8 + osmdata-0.1.9/osmdata/man/osm_polygons.Rd | 8 + osmdata-0.1.9/osmdata/man/osmdata.Rd | 1 osmdata-0.1.9/osmdata/man/osmdata_sc.Rd | 7 + osmdata-0.1.9/osmdata/man/osmdata_sf.Rd | 7 + osmdata-0.1.9/osmdata/man/osmdata_sp.Rd | 7 + osmdata-0.1.9/osmdata/man/osmdata_xml.Rd | 7 + osmdata-0.1.9/osmdata/man/overpass_status.Rd | 13 + osmdata-0.1.9/osmdata/man/set_overpass_url.Rd | 4 osmdata-0.1.9/osmdata/man/trim_osmdata.Rd | 13 + osmdata-0.1.9/osmdata/man/unique_osmdata.Rd | 8 + osmdata-0.1.9/osmdata/man/unname_osmdata_sf.Rd | 21 +++ osmdata-0.1.9/osmdata/src/trace-osm.cpp | 2 osmdata-0.1.9/osmdata/tests/testthat/test-opq.R |only osmdata-0.1.9/osmdata/tests/testthat/test-osmdata.R | 38 +++++ osmdata-0.1.9/osmdata/tests/testthat/test-trim.R | 4 osmdata-0.1.9/osmdata/tests/testthat/test-unname.R |only osmdata-0.1.9/osmdata/vignettes/osmdata.Rmd | 4 osmdata-0.1.9/osmdata/vignettes/query-split.Rmd |only 64 files changed, 567 insertions(+), 108 deletions(-)
Title: Model and Solve Mixed Integer Linear Programs
Description: Model mixed integer linear programs in an algebraic way directly in R.
The model is solver-independent and thus offers the possibility
to solve a model with different solvers. It currently only supports
linear constraints and objective functions. See the 'ompr'
website <https://dirkschumacher.github.io/ompr/> for more information,
documentation and examples.
Author: Dirk Schumacher [aut, cre]
Maintainer: Dirk Schumacher <mail@dirk-schumacher.net>
Diff between ompr versions 0.8.1 dated 2020-12-04 and 1.0.0 dated 2022-01-26
ompr-0.8.1/ompr/R/RcppExports.R |only ompr-0.8.1/ompr/R/class-constraint.R |only ompr-0.8.1/ompr/R/class-model.R |only ompr-0.8.1/ompr/R/class-solution.R |only ompr-0.8.1/ompr/R/class-variable.R |only ompr-0.8.1/ompr/R/linearopt-variables.R |only ompr-0.8.1/ompr/R/milp.R |only ompr-0.8.1/ompr/man/LinearVariable-class.Rd |only ompr-0.8.1/ompr/man/LinearVariableCollection-LinearVariableCollection-method.Rd |only ompr-0.8.1/ompr/man/LinearVariableCollection-LinearVariableSum-method.Rd |only ompr-0.8.1/ompr/man/LinearVariableCollection-class.Rd |only ompr-0.8.1/ompr/man/LinearVariableCollection-missing-method.Rd |only ompr-0.8.1/ompr/man/LinearVariableCollection-numeric-method.Rd |only ompr-0.8.1/ompr/man/LinearVariableSum-LinearVariableCollection-method.Rd |only ompr-0.8.1/ompr/man/LinearVariableSum-LinearVariableSum-method.Rd |only ompr-0.8.1/ompr/man/LinearVariableSum-class.Rd |only ompr-0.8.1/ompr/man/LinearVariableSum-missing-method.Rd |only ompr-0.8.1/ompr/man/LinearVariableSum-numeric-method.Rd |only ompr-0.8.1/ompr/man/numeric-LinearVariableCollection-method.Rd |only ompr-0.8.1/ompr/man/numeric-LinearVariableSum-method.Rd |only ompr-0.8.1/ompr/man/plus-LinearVariableCollection-LinearVariableCollection-method.Rd |only ompr-0.8.1/ompr/man/plus-LinearVariableCollection-LinearVariableSum-method.Rd |only ompr-0.8.1/ompr/man/plus-LinearVariableCollection-missing-method.Rd |only ompr-0.8.1/ompr/man/plus-LinearVariableCollection-numeric-method.Rd |only ompr-0.8.1/ompr/man/plus-LinearVariableSum-LinearVariableCollection-method.Rd |only ompr-0.8.1/ompr/man/plus-LinearVariableSum-LinearVariableSum-method.Rd |only ompr-0.8.1/ompr/man/plus-LinearVariableSum-missing-method.Rd |only ompr-0.8.1/ompr/man/plus-LinearVariableSum-numeric-method.Rd |only ompr-0.8.1/ompr/man/plus-numeric-LinearVariableCollection-method.Rd |only ompr-0.8.1/ompr/man/plus-numeric-LinearVariableSum-method.Rd |only ompr-0.8.1/ompr/man/slash-LinearVariableCollection-numeric-method.Rd |only ompr-0.8.1/ompr/man/slash-LinearVariableSum-numeric-method.Rd |only ompr-0.8.1/ompr/man/sub-LinearVariableCollection-ANY-ANY-missing-method.Rd |only ompr-0.8.1/ompr/man/sum_expr.Rd |only ompr-0.8.1/ompr/man/times-LinearVariableCollection-numeric-method.Rd |only ompr-0.8.1/ompr/man/times-LinearVariableSum-numeric-method.Rd |only ompr-0.8.1/ompr/man/times-numeric-LinearVariableCollection-method.Rd |only ompr-0.8.1/ompr/man/times-numeric-LinearVariableSum-method.Rd |only ompr-0.8.1/ompr/src |only ompr-0.8.1/ompr/tests/testthat/test-helpers.R |only ompr-0.8.1/ompr/tests/testthat/test-model-api.R |only ompr-0.8.1/ompr/tests/testthat/test-solution.R |only ompr-1.0.0/ompr/DESCRIPTION | 26 ompr-1.0.0/ompr/LICENSE |only ompr-1.0.0/ompr/MD5 | 133 +- ompr-1.0.0/ompr/NAMESPACE | 57 - ompr-1.0.0/ompr/NEWS.md | 53 + ompr-1.0.0/ompr/R/abstract-model-impl.R |only ompr-1.0.0/ompr/R/helper.R | 508 ---------- ompr-1.0.0/ompr/R/linear-optimization-model-impl.R |only ompr-1.0.0/ompr/R/linear-optimization-model-linear-constraints.R |only ompr-1.0.0/ompr/R/linear-optimization-model-linear-functions.R |only ompr-1.0.0/ompr/R/milp-impl.R |only ompr-1.0.0/ompr/R/milp-linearopt-variables.R |only ompr-1.0.0/ompr/R/model-api.R | 322 ++---- ompr-1.0.0/ompr/R/ompr-package.R | 3 ompr-1.0.0/ompr/R/solution-api.R |only ompr-1.0.0/ompr/R/solution-impl.R |only ompr-1.0.0/ompr/README.md |only ompr-1.0.0/ompr/man/MILPModel.Rd | 2 ompr-1.0.0/ompr/man/MIPModel.Rd | 2 ompr-1.0.0/ompr/man/add_constraint.Rd | 12 ompr-1.0.0/ompr/man/add_variable.Rd | 11 ompr-1.0.0/ompr/man/additional_solver_output.Rd |only ompr-1.0.0/ompr/man/as_colwise.Rd | 2 ompr-1.0.0/ompr/man/colwise.Rd | 43 ompr-1.0.0/ompr/man/extract_bound_from_constraint.Rd |only ompr-1.0.0/ompr/man/get_column_duals.Rd | 4 ompr-1.0.0/ompr/man/get_row_duals.Rd | 2 ompr-1.0.0/ompr/man/get_solution.Rd | 22 ompr-1.0.0/ompr/man/linear-constraints.Rd |only ompr-1.0.0/ompr/man/linear-functions.Rd |only ompr-1.0.0/ompr/man/milp-linear-variables.Rd |only ompr-1.0.0/ompr/man/new_solution.Rd | 7 ompr-1.0.0/ompr/man/objective_function.Rd | 2 ompr-1.0.0/ompr/man/objective_value.Rd | 2 ompr-1.0.0/ompr/man/ompr.Rd | 1 ompr-1.0.0/ompr/man/set_bounds.Rd | 24 ompr-1.0.0/ompr/man/set_objective.Rd | 9 ompr-1.0.0/ompr/man/solve_model.Rd | 2 ompr-1.0.0/ompr/man/solver_status.Rd | 2 ompr-1.0.0/ompr/man/sum_over.Rd |only ompr-1.0.0/ompr/tests/testthat/test-add-constraint-milp.R | 4 ompr-1.0.0/ompr/tests/testthat/test-add-constraint.R | 58 - ompr-1.0.0/ompr/tests/testthat/test-add-variable-milp.R | 24 ompr-1.0.0/ompr/tests/testthat/test-add-variable.R | 83 - ompr-1.0.0/ompr/tests/testthat/test-linear-constraints.R |only ompr-1.0.0/ompr/tests/testthat/test-linear-functions.R |only ompr-1.0.0/ompr/tests/testthat/test-linearops.R | 6 ompr-1.0.0/ompr/tests/testthat/test-model-api-linear-optimization-model.R |only ompr-1.0.0/ompr/tests/testthat/test-model-api-milp.R | 44 ompr-1.0.0/ompr/tests/testthat/test-model-milp.R | 113 +- ompr-1.0.0/ompr/tests/testthat/test-model.R | 162 +-- ompr-1.0.0/ompr/tests/testthat/test-set-bounds-milp.R | 14 ompr-1.0.0/ompr/tests/testthat/test-set-bounds.R | 139 ++ ompr-1.0.0/ompr/tests/testthat/test-solution-linear-optimization-model.R |only ompr-1.0.0/ompr/tests/testthat/test-solution-milp.R | 215 ++-- 97 files changed, 882 insertions(+), 1231 deletions(-)
Title: Local Polynomial Density Estimation and Inference
Description: Without imposing stringent distributional assumptions or shape restrictions, nonparametric estimation has been popular in economics and other social sciences for counterfactual analysis, program evaluation, and policy recommendations. This package implements a novel density (and derivatives) estimator based on local polynomial regressions, documented in Cattaneo, Jansson and Ma (2022) <doi:10.18637/jss.v101.i02>: lpdensity() to construct local polynomial based density (and derivatives) estimator, and lpbwdensity() to perform data-driven bandwidth selection.
Author: Matias D. Cattaneo, Michael Jansson, Xinwei Ma
Maintainer: Xinwei Ma <x1ma@ucsd.edu>
Diff between lpdensity versions 2.2 dated 2021-03-02 and 2.3 dated 2022-01-26
DESCRIPTION | 9 ++++----- MD5 | 17 +++++++++-------- R/lpbwdensity.R | 8 ++++---- R/lpbwdensity_fn.R | 8 ++++---- R/lpdensity-package.R | 10 +++++----- R/lpdensity.R | 14 +++++++------- inst |only man/lpbwdensity.Rd | 8 ++++---- man/lpdensity-package.Rd | 10 +++++----- man/lpdensity.Rd | 14 +++++++------- 10 files changed, 49 insertions(+), 49 deletions(-)
Title: R Interface for the 'H2O' Scalable Machine Learning Platform
Description: R interface for 'H2O', the scalable open source machine learning
platform that offers parallelized implementations of many supervised and
unsupervised machine learning algorithms such as Generalized Linear
Models (GLM), Gradient Boosting Machines (including XGBoost), Random Forests,
Deep Neural Networks (Deep Learning), Stacked Ensembles, Naive Bayes,
Generalized Additive Models (GAM), ANOVA GLM, Cox Proportional Hazards, K-Means, PCA, ModelSelection,
Word2Vec, as well as a fully automatic machine learning algorithm (H2O AutoML).
Author: Erin LeDell [aut, cre],
Navdeep Gill [aut],
Spencer Aiello [aut],
Anqi Fu [aut],
Arno Candel [aut],
Cliff Click [aut],
Tom Kraljevic [aut],
Tomas Nykodym [aut],
Patrick Aboyoun [aut],
Michal Kurka [aut],
Michal Malohlava [aut],
Ludi Rehak [ctb],
Eric Eckstrand [ctb],
Brandon Hill [ctb],
Sebastian Vidrio [ctb],
Surekha Jadhawani [ctb],
Amy Wang [ctb],
Raymond Peck [ctb],
Wendy Wong [ctb],
Jan Gorecki [ctb],
Matt Dowle [ctb],
Yuan Tang [ctb],
Lauren DiPerna [ctb],
Tomas Fryda [ctb],
Veronika Maurerova [ctb],
H2O.ai [cph, fnd]
Maintainer: Erin LeDell <erin@h2o.ai>
Diff between h2o versions 3.36.0.1 dated 2022-01-03 and 3.36.0.2 dated 2022-01-26
DESCRIPTION | 8 ++--- MD5 | 16 +++++------ R/frame.R | 2 - R/generic.R | 12 ++------ R/models.R | 26 +++++++++++++----- R/modelselection.R | 65 ++++++++++++++++++++++++++++++++++++++++++---- inst/buildnum.txt | 2 - man/h2o-package.Rd | 4 +- man/h2o.modelSelection.Rd | 37 +++++++++++++++++++++++--- 9 files changed, 131 insertions(+), 41 deletions(-)
Title: Indices of Effect Size and Standardized Parameters
Description: Provide utilities to work with indices of effect size and
standardized parameters for a wide variety of models (see list of
supported models using the function 'insight::supported_models()'),
allowing computation of and conversion between indices such as Cohen's
d, r, odds, etc.
Author: Mattan S. Ben-Shachar [aut, cre]
(<https://orcid.org/0000-0002-4287-4801>, @mattansb),
Dominique Makowski [aut] (<https://orcid.org/0000-0001-5375-9967>,
@Dom_Makowski),
Daniel Lüdecke [aut] (<https://orcid.org/0000-0002-8895-3206>,
@strengejacke),
Indrajeet Patil [ctb] (<https://orcid.org/0000-0003-1995-6531>,
@patilindrajeets),
Brenton M. Wiernik [ctb] (<https://orcid.org/0000-0001-9560-6336>,
@bmwiernik),
Ken Kelley [ctb],
David Stanley [ctb],
Jessica Burnett [rev] (<https://orcid.org/0000-0002-0896-5099>),
Johannes Karreth [rev] (<https://orcid.org/0000-0003-4586-7153>)
Maintainer: Mattan S. Ben-Shachar <matanshm@post.bgu.ac.il>
Diff between effectsize versions 0.6.0 dated 2022-01-14 and 0.6.0.1 dated 2022-01-26
DESCRIPTION | 6 - MD5 | 26 ++--- NEWS.md | 9 + R/effectsize.htest.R | 10 - R/equivalence_test.R | 4 R/eta_squared.R | 193 ++++++++++++++++---------------------- R/interpret_cfa_fit.R | 2 R/reexports.R | 28 +++-- R/standardize.models.R | 4 README.md | 28 +++-- build/partial.rdb |binary man/reexports.Rd | 6 - tests/testthat/test-eta_squared.R | 54 ++++++++-- tests/testthat/test-interpret.R | 4 14 files changed, 203 insertions(+), 171 deletions(-)
Title: Access to the 'twelvedata' Financial Data API
Description: The 'twelvedata' REST service offers access to current and historical
data on stocks, standard as well as digital 'crypto' currencies, and other financial
assets covering a wide variety of course and time spans. See <https://twelvedata.com/>
for details, to create an account, and to request an API key for free-but-capped access
to the data.
Author: Dirk Eddelbuettel and Kenneth Rose
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between td versions 0.0.5 dated 2021-10-28 and 0.0.6 dated 2022-01-26
ChangeLog | 9 +++++++++ DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- R/time_series.R | 2 +- build/partial.rdb |binary inst/NEWS.Rd | 9 ++++++++- 6 files changed, 27 insertions(+), 11 deletions(-)
Title: Umbrella Review Package for R
Description: A comprehensive range of facilities to perform umbrella reviews with stratification of the evidence in R. The package accomplishes this aim by building on three core functions that: (i) automatically perform all required calculations in an umbrella review (including but not limited to meta-analyses), (ii) stratify evidence according to various classification criteria, and (iii) generate a visual representation of the results. Note that if you are not familiar with R, the core features of this package are available from a web browser (<https://www.metaumbrella.org/>).
Author: Corentin J Gosling [aut, cre],
Aleix Solanes [aut],
Paolo Fusar-Poli [aut],
Joaquim Radua [aut]
Maintainer: Corentin J Gosling <cgosling@parisnanterre.fr>
Diff between metaumbrella versions 1.0.1 dated 2022-01-07 and 1.0.2 dated 2022-01-26
DESCRIPTION | 6 MD5 | 48 +- NEWS.md | 4 R/esb_test.R | 5 R/functions_forest_plot.R | 12 R/functions_format_dataset.R | 8 R/functions_power.R | 1 R/functions_publication_bias.R | 9 R/metaumbrella.R | 2 R/umbrella.R | 47 -- README.md | 38 + inst/CITATION | 2 inst/doc/forest_plot.html | 30 - inst/doc/stratification_evidence.html | 54 +- inst/doc/train_well_formatted_dataset.html | 34 - man/metaumbrella-package.Rd | 2 tests/testthat/test-check_data.R | 190 ++++---- tests/testthat/test-esb_test.R | 21 tests/testthat/test-estimate_smd.R | 4 tests/testthat/test-format_dataset.R | 298 +++++++------ tests/testthat/test-functions_meta.R | 317 ++++++++++---- tests/testthat/test-functions_multilevel.R | 380 +++++++++++++---- tests/testthat/test-functions_other.R | 8 tests/testthat/test-functions_publication_bias.R | 13 tests/testthat/test-umbrella.R | 504 ++++++++++++++--------- 25 files changed, 1260 insertions(+), 777 deletions(-)
Title: Elastic Analysis of Sparse, Dense and Irregular Curves
Description: Provides functions to align curves and to compute mean curves based on the
elastic distance defined in the square-root-velocity framework. For more details on
this framework see Srivastava and Klassen (2016, <doi:10.1007/978-1-4939-4020-2>).
For more theoretical details on our methods and algorithms see
Steyer et al. (2021, <arXiv:2104.11039>).
Author: Lisa Steyer <lisa.steyer@hu-berlin.de>
Maintainer: Lisa Steyer <lisa.steyer@hu-berlin.de>
Diff between elasdics versions 0.1.4 dated 2021-12-02 and 0.1.5 dated 2022-01-26
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- R/find_optimal_t.R | 6 ++++++ tests/testthat/Rplots.pdf |binary tests/testthat/test_find_optimal_t.R | 13 +++++++++++++ 5 files changed, 26 insertions(+), 7 deletions(-)
Title: Communicating with AWS EC2 and ECS using AWS REST APIs
Description: Providing the functions for communicating with Amazon Web Services(AWS)
Elastic Compute Cloud(EC2) and Elastic Container Service(ECS).
The functions will have the prefix 'ecs_' or 'ec2_' depending on the class
of the API. The request will be sent via the REST API and the parameters are
given by the function argument. The credentials can be set via 'aws_set_credentials'.
The EC2 documentation can be found at <https://docs.aws.amazon.com/AWSEC2/latest/APIReference/Welcome.html>
and ECS can be found at <https://docs.aws.amazon.com/AmazonECS/latest/APIReference/Welcome.html>.
Author: Jiefei Wang [aut, cre],
Martin Morgan [aut]
Maintainer: Jiefei Wang <szwjf08@gmail.com>
Diff between aws.ecx versions 1.0.4 dated 2021-04-04 and 1.0.5 dated 2022-01-26
aws.ecx-1.0.4/aws.ecx/inst/quick-start-guide.raw.knit.md |only aws.ecx-1.0.4/aws.ecx/inst/quick-start-guide.raw.utf8.md |only aws.ecx-1.0.5/aws.ecx/DESCRIPTION | 21 aws.ecx-1.0.5/aws.ecx/MD5 | 26 aws.ecx-1.0.5/aws.ecx/R/ec2-actions.R |46566 +++++++-------- aws.ecx-1.0.5/aws.ecx/R/ecs-actions.R | 6422 +- aws.ecx-1.0.5/aws.ecx/R/package-settings.R | 124 aws.ecx-1.0.5/aws.ecx/R/utils.R | 140 aws.ecx-1.0.5/aws.ecx/README.md | 614 aws.ecx-1.0.5/aws.ecx/build/vignette.rds |binary aws.ecx-1.0.5/aws.ecx/inst/doc/quick-start-guide.Rmd | 614 aws.ecx-1.0.5/aws.ecx/inst/doc/quick-start-guide.html | 1074 aws.ecx-1.0.5/aws.ecx/tests/testthat/test_ec2.R | 118 aws.ecx-1.0.5/aws.ecx/tests/testthat/test_ecs.R | 156 aws.ecx-1.0.5/aws.ecx/vignettes/quick-start-guide.Rmd | 614 15 files changed, 28284 insertions(+), 28205 deletions(-)
Title: Explore 'Wikidata' Through Tidy Data Frames
Description: Query 'Wikidata' API <https://www.wikidata.org/wiki/Wikidata:Main_Page> with ease, get tidy data frames in response, and cache data in a local 'SQLite' database.
Author: Giorgio Comai [aut, cre, cph] (<https://orcid.org/0000-0002-0515-9542>),
EDJNet [fnd]
Maintainer: Giorgio Comai <g@giorgiocomai.eu>
Diff between tidywikidatar versions 0.4.2 dated 2021-09-14 and 0.5.0 dated 2022-01-26
tidywikidatar-0.4.2/tidywikidatar/R/tw_get_id_from_wikipedia.R |only tidywikidatar-0.4.2/tidywikidatar/man/tw_get_id_of_wikipedia_page.Rd |only tidywikidatar-0.4.2/tidywikidatar/man/tw_get_links_from_wikipedia_page.Rd |only tidywikidatar-0.5.0/tidywikidatar/DESCRIPTION | 13 tidywikidatar-0.5.0/tidywikidatar/LICENSE | 4 tidywikidatar-0.5.0/tidywikidatar/MD5 | 183 +- tidywikidatar-0.5.0/tidywikidatar/NAMESPACE | 21 tidywikidatar-0.5.0/tidywikidatar/NEWS.md | 16 tidywikidatar-0.5.0/tidywikidatar/R/data.R |only tidywikidatar-0.5.0/tidywikidatar/R/tw_caching.R | 135 +- tidywikidatar-0.5.0/tidywikidatar/R/tw_connect_to_cache.R | 118 + tidywikidatar-0.5.0/tidywikidatar/R/tw_extract.R |only tidywikidatar-0.5.0/tidywikidatar/R/tw_filter.R | 58 tidywikidatar-0.5.0/tidywikidatar/R/tw_get.R | 270 +--- tidywikidatar-0.5.0/tidywikidatar/R/tw_get_cached_item.R | 140 +- tidywikidatar-0.5.0/tidywikidatar/R/tw_get_cached_search.R | 63 tidywikidatar-0.5.0/tidywikidatar/R/tw_get_field.R | 2 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Title: Search and Retrieve Data from Eurostat Database
Description: Eurostat is the statistical office of the European Union and provides high quality statistics for Europe.
Large set of the data is disseminated through the Eurostat database (<https://ec.europa.eu/eurostat/data/database>).
The tools are using the REST API with the Statistical Data and Metadata eXchange (SDMX) Web Services
(<https://ec.europa.eu/eurostat/web/sdmx-web-services/about-this-service>) to search and download data from
the Eurostat database using the SDMX standard.
Author: Mátyás Mészáros [aut, cre]
Maintainer: Mátyás Mészáros <matyas.meszaros@ec.europa.eu>
Diff between restatapi versions 0.12.3 dated 2021-10-07 and 0.12.8 dated 2022-01-26
DESCRIPTION | 10 +++++----- MD5 | 18 +++++++++--------- NEWS.md | 24 ++++++++++++++++++++++++ R/extract_toc.R | 17 ++++++++++++----- R/get_eurostat_data.R | 18 ++++++++++++------ R/get_eurostat_dsd.R | 20 +++++++++++++------- R/get_eurostat_raw.R | 18 ++++++++++++------ R/get_eurostat_toc.R | 16 ++++++++++++---- R/load_cfg.R | 5 ++++- man/extract_toc.Rd | 12 +++++++++--- 10 files changed, 112 insertions(+), 46 deletions(-)
Title: Bayesian Regression with Meshed Gaussian Processes
Description: Fits Bayesian spatial or spatiotemporal multivariate regression models based on latent Meshed Gaussian Processes (MGP) as described in Peruzzi, Banerjee, Finley (2020) <doi:10.1080/01621459.2020.1833889>, Peruzzi, Banerjee, Dunson, and Finley (2021) <arXiv:2101.03579>, Peruzzi and Dunson (2022) <arXiv:2201.10080>. Funded by ERC grant 856506 and NIH grant R01ES028804.
Author: Michele Peruzzi
Maintainer: Michele Peruzzi <michele.peruzzi@duke.edu>
Diff between meshed versions 0.1.4 dated 2021-10-06 and 0.2 dated 2022-01-26
meshed-0.1.4/meshed/src/distrib_mvn_sample.cpp |only meshed-0.2/meshed/DESCRIPTION | 10 meshed-0.2/meshed/MD5 | 80 +- meshed-0.2/meshed/NEWS.md | 17 meshed-0.2/meshed/R/RcppExports.R | 16 meshed-0.2/meshed/R/pimeshed.r | 17 meshed-0.2/meshed/R/rmgp.r | 7 meshed-0.2/meshed/R/spmeshed.map.r | 70 +- meshed-0.2/meshed/R/spmeshed.r | 71 +- meshed-0.2/meshed/R/utils.r | 10 meshed-0.2/meshed/README.md | 10 meshed-0.2/meshed/build/partial.rdb |binary meshed-0.2/meshed/build/vignette.rds |binary meshed-0.2/meshed/inst/doc/multivariate_irregular.html | 12 meshed-0.2/meshed/inst/doc/univariate_gridded.html | 16 meshed-0.2/meshed/inst/doc/univariate_irregular.html | 20 meshed-0.2/meshed/inst/doc/univariate_irregular_poisson.html | 14 meshed-0.2/meshed/man/spmeshed.Rd | 19 meshed-0.2/meshed/src/RcppExports.cpp | 48 + meshed-0.2/meshed/src/covariance_lmc.cpp | 45 + meshed-0.2/meshed/src/covariance_lmc.h | 2 meshed-0.2/meshed/src/distrib_densities_gradients.h | 140 ++++ meshed-0.2/meshed/src/distrib_vecrandom.h | 22 meshed-0.2/meshed/src/mcmc_hmc_adapt.h | 167 ++--- meshed-0.2/meshed/src/mcmc_hmc_nodes.cpp | 338 ++++------- meshed-0.2/meshed/src/mcmc_hmc_nodes.h | 3 meshed-0.2/meshed/src/mcmc_hmc_sample.h | 335 +++++++--- meshed-0.2/meshed/src/mcmc_ramadapt.h | 13 meshed-0.2/meshed/src/mesh_dep.cpp | 206 ++++++ meshed-0.2/meshed/src/meshed.cpp | 113 ++- meshed-0.2/meshed/src/meshed.h | 24 meshed-0.2/meshed/src/meshed_beta_sampler.cpp | 9 meshed-0.2/meshed/src/meshed_betalambdatau_sampler.cpp |only meshed-0.2/meshed/src/meshed_casc.cpp | 93 +-- meshed-0.2/meshed/src/meshed_lambda_sampler.cpp | 9 meshed-0.2/meshed/src/meshed_mcmc.cpp | 179 ++++- meshed-0.2/meshed/src/meshed_tausq_sampler.cpp | 79 -- meshed-0.2/meshed/src/meshed_theta_sampler.cpp | 9 meshed-0.2/meshed/src/meshed_w_sampler.cpp | 43 - meshed-0.2/meshed/src/utils_irls.cpp | 19 meshed-0.2/meshed/src/utils_irls.h | 8 meshed-0.2/meshed/src/utils_parametrize.h | 74 ++ 42 files changed, 1550 insertions(+), 817 deletions(-)
Title: COVID Symptom Study Sweden Open Dataset
Description: The COVID Symptom Study is a non-commercial project that uses a free mobile app to facilitate real-time data collection of symptoms, exposures, and risk factors related to COVID19. The package allows easy access to summary statistics data from COVID Symptom Study Sweden.
Author: Hugo Fitipaldi [aut, cre]
Maintainer: Hugo Fitipaldi <hugo.fitipaldi@med.lu.se>
Diff between covidsymptom versions 0.9.2 dated 2021-03-31 and 0.9.3 dated 2022-01-26
DESCRIPTION | 11 - MD5 | 28 ++-- NEWS.md | 5 R/data.R | 18 ++ README.md | 61 +++----- build/vignette.rds |binary data/county_estimates.rda |binary data/csss_tests.rda |only data/national_estimates.rda |binary data/postcode_estimates.rda |binary inst/doc/covidsymtom_vignette.html | 215 +------------------------------ man/covidsymptom.Rd | 2 man/csss_tests.Rd |only man/figures/README-unnamed-chunk-3-1.png |binary man/figures/README-unnamed-chunk-4-1.png |binary man/figures/README-unnamed-chunk-6-1.png |binary 16 files changed, 80 insertions(+), 260 deletions(-)
Title: Design and Analysis of Replication Studies
Description: Provides utilities for the design and analysis of replication studies.
Features both traditional methods based on statistical significance and
more recent methods such as the sceptical p-value; Held L. (2020) <doi:10.1111/rssa.12493>.
Also provides related methods including the harmonic mean chi-squared test; Held, L. (2020), <doi:10.1111/rssc.12410>,
and intrinsic credibility; Held, L. (2019) <doi:10.1098/rsos.181534>.
Contains datasets from four large-scale replication projects.
Author: Leonhard Held [aut] (<https://orcid.org/0000-0002-8686-5325>),
Samuel Pawel [cre, aut] (<https://orcid.org/0000-0003-2779-320X>),
Charlotte Micheloud [aut] (<https://orcid.org/0000-0002-4995-4505>),
Florian Gerber [aut] (<https://orcid.org/0000-0001-8545-5263>)
Maintainer: Samuel Pawel <samuel.pawel@uzh.ch>
Diff between ReplicationSuccess versions 1.1.1 dated 2021-12-08 and 1.2 dated 2022-01-26
DESCRIPTION | 8 +- MD5 | 24 +++---- NEWS.md | 10 ++- R/datasets.R | 129 ++++++++++++++++++++++++++++++++++++--- R/effectSizeReplicationSuccess.R | 2 R/hMeanChiSq.R | 1 R/predictionInterval.R | 21 ------ build/partial.rdb |binary data/protzko2020.rda |only inst/doc/ReplicationSuccess.pdf |binary man/RProjects.Rd | 43 ++++++++++--- man/predictionInterval.Rd | 21 ------ man/protzko2020.Rd |only man/unirootAll.Rd | 3 14 files changed, 186 insertions(+), 76 deletions(-)
More information about ReplicationSuccess at CRAN
Permanent link
Title: Interface to 'Python'
Description: Interface to 'Python' modules, classes, and functions. When calling
into 'Python', R data types are automatically converted to their equivalent 'Python'
types. When values are returned from 'Python' to R they are converted back to R
types. Compatible with all versions of 'Python' >= 2.7.
Author: Kevin Ushey [aut, cre],
JJ Allaire [aut],
RStudio [cph, fnd],
Yuan Tang [aut, cph] (<https://orcid.org/0000-0001-5243-233X>),
Dirk Eddelbuettel [ctb, cph],
Bryan Lewis [ctb, cph],
Sigrid Keydana [ctb],
Ryan Hafen [ctb, cph],
Marcus Geelnard [ctb, cph] (TinyThread library,
http://tinythreadpp.bitsnbites.eu/)
Maintainer: Kevin Ushey <kevin@rstudio.com>
Diff between reticulate versions 1.23 dated 2022-01-14 and 1.24 dated 2022-01-26
DESCRIPTION | 6 MD5 | 34 +- NEWS.md | 12 R/config.R | 62 ++-- inst/doc/arrays.html | 245 ++++++++++++++---- inst/doc/calling_python.html | 320 +++++++++++++++++++----- inst/doc/package.html | 147 +++++++++-- inst/doc/python_dependencies.html | 131 ++++++++-- inst/doc/python_packages.html | 80 ++++-- inst/doc/python_primer.R | 12 inst/doc/python_primer.Rmd | 13 - inst/doc/python_primer.html | 491 ++++++++++++++++++++++++++++++-------- inst/doc/r_markdown.html | 55 +++- inst/doc/versions.html | 92 +++++-- src/libpython.cpp | 5 src/libpython.h | 5 src/python.cpp | 6 vignettes/python_primer.Rmd | 13 - 18 files changed, 1333 insertions(+), 396 deletions(-)
Title: Generalized Price and Quantity Indexes
Description: A small package for calculating lots of different price indexes, and by extension quantity indexes. Provides tools to build and work with any type of bilateral generalized-mean index (of which most price indexes are), along with a few important indexes that don't belong to the generalized-mean family (e.g., superlative quadratic-mean indexes, GEKS). Implements and extends many of the methods in Balk (2008, ISBN:978-1-107-40496-0), von der Lippe (2001, ISBN:3-8246-0638-0), and the CPI manual (2020, ISBN:978-1-51354-298-0) for bilateral price indexes.
Author: Steve Martin [aut, cre, cph] (<https://orcid.org/0000-0003-2544-9480>)
Maintainer: Steve Martin <stevemartin041@gmail.com>
Diff between gpindex versions 0.3.9 dated 2021-11-26 and 0.4.2 dated 2022-01-26
gpindex-0.3.9/gpindex/man/gpindex.Rd |only gpindex-0.3.9/gpindex/tests/test_slow.R |only gpindex-0.4.2/gpindex/DESCRIPTION | 14 gpindex-0.4.2/gpindex/MD5 | 64 +-- gpindex-0.4.2/gpindex/NAMESPACE | 2 gpindex-0.4.2/gpindex/NEWS | 8 gpindex-0.4.2/gpindex/R/contributions.R |only gpindex-0.4.2/gpindex/R/geks.R | 4 gpindex-0.4.2/gpindex/R/helper_functions.R | 6 gpindex-0.4.2/gpindex/R/means.R | 28 - gpindex-0.4.2/gpindex/R/price_indexes.R | 69 ++- gpindex-0.4.2/gpindex/R/utilities.R | 20 - gpindex-0.4.2/gpindex/R/weights.R | 185 ++++------ gpindex-0.4.2/gpindex/inst/po/en@quot/LC_MESSAGES/R-gpindex.mo |binary gpindex-0.4.2/gpindex/inst/po/fr/LC_MESSAGES/R-gpindex.mo |binary gpindex-0.4.2/gpindex/inst/slowTests |only gpindex-0.4.2/gpindex/man/contributions.Rd | 21 - gpindex-0.4.2/gpindex/man/geks.Rd | 6 gpindex-0.4.2/gpindex/man/generalized_mean.Rd | 4 gpindex-0.4.2/gpindex/man/gpindex-package.Rd |only gpindex-0.4.2/gpindex/man/lehmer_mean.Rd | 8 gpindex-0.4.2/gpindex/man/nested_mean.Rd | 37 +- gpindex-0.4.2/gpindex/man/offset_prices.Rd | 2 gpindex-0.4.2/gpindex/man/outlier.Rd | 2 gpindex-0.4.2/gpindex/man/price_indexes.Rd | 31 + gpindex-0.4.2/gpindex/man/transform_weights.Rd | 51 ++ gpindex-0.4.2/gpindex/po/R-fr.po | 6 gpindex-0.4.2/gpindex/po/R-gpindex.pot | 6 gpindex-0.4.2/gpindex/tests/Examples/gpindex-Ex.Rout.save | 103 ++++- gpindex-0.4.2/gpindex/tests/test_geks.R | 61 ++- gpindex-0.4.2/gpindex/tests/test_geks.Rout.save | 71 ++- gpindex-0.4.2/gpindex/tests/test_means.R | 36 + gpindex-0.4.2/gpindex/tests/test_means.Rout.save | 53 ++ gpindex-0.4.2/gpindex/tests/test_weights.R | 6 gpindex-0.4.2/gpindex/tests/test_weights.Rout.save | 16 35 files changed, 615 insertions(+), 305 deletions(-)
Title: Marginal Effects, Marginal Means, Predictions, and Contrasts
Description: Compute, summarize, and plot marginal effects, adjusted predictions, contrasts, and marginal means for a wide variety of models.
Author: Vincent Arel-Bundock [aut, cre, cph]
(<https://orcid.org/0000-0003-2042-7063>)
Maintainer: Vincent Arel-Bundock <vincent.arel-bundock@umontreal.ca>
Diff between marginaleffects versions 0.3.2 dated 2022-01-18 and 0.3.3 dated 2022-01-26
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Title: Efficient Implementation of Binary Segmentation
Description: Standard template library
containers are used to implement an efficient binary segmentation
algorithm, which is log-linear on average and quadratic in the
worst case.
Author: Toby Dylan Hocking
Maintainer: Toby Dylan Hocking <toby.hocking@r-project.org>
Diff between binsegRcpp versions 2021.11.3 dated 2022-01-20 and 2022.1.24 dated 2022-01-26
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS | 4 ++++ R/random_set_vec.R | 5 +---- man/random_set_vec.Rd | 5 +---- 5 files changed, 13 insertions(+), 15 deletions(-)