Title: Geographic Tools for Studying Gerrymandering
Description: A compilation of tools to complete common tasks for studying gerrymandering. This focuses on the geographic tool side of common problems, such as linking different levels of spatial units or estimating how to break up units. Functions exist for creating redistricting-focused data for the US.
Author: Christopher T. Kenny [aut, cre]
Maintainer: Christopher T. Kenny <christopherkenny@fas.harvard.edu>
Diff between geomander versions 2.0.2 dated 2021-12-08 and 2.0.3 dated 2022-03-06
DESCRIPTION | 8 +-- MD5 | 24 +++++----- R/adjacency.R | 12 ++--- build/partial.rdb |binary build/vignette.rds |binary inst/doc/Redistricting_School_Districts.html | 16 +++---- man/block2prec.Rd | 60 +++++++++++++-------------- man/count_connections.Rd | 50 +++++++++++----------- man/geo_plot.Rd | 46 ++++++++++---------- man/nrcsd.Rd | 36 ++++++++-------- man/pipe.Rd | 40 +++++++++--------- src/RcppExports.cpp | 5 ++ tests/testthat/test-split.R | 2 13 files changed, 151 insertions(+), 148 deletions(-)
Title: Load and Process Passive Acoustic Data
Description: Tools for loading and processing passive acoustic data. Read in data
that has been processed in 'Pamguard' (<https://www.pamguard.org/>), apply a suite
processing functions, and export data for reports or external modeling tools. Parameter
calculations implement methods by Oswald et al (2007) <doi:10.1121/1.2743157>,
Griffiths et al (2020) <doi:10.1121/10.0001229> and Baumann-Pickering et al (2010)
<doi:10.1121/1.3479549>.
Author: Taiki Sakai [aut, cre],
Jay Barlow [ctb],
Emily Griffiths [ctb],
Michael Oswald [ctb],
Simone Baumann-Pickering [ctb],
Julie Oswald [ctb]
Maintainer: Taiki Sakai <taiki.sakai@noaa.gov>
Diff between PAMpal versions 0.15.0 dated 2022-01-10 and 0.16.0 dated 2022-03-06
DESCRIPTION | 15 MD5 | 64 ++-- NAMESPACE | 8 NEWS.md | 46 ++ R/AllClass.R | 3 R/PAMpalSettings.R | 19 + R/addBinaries.R | 1 R/addDatabase.R | 21 - R/addFunction.R | 18 - R/bindStudies.R |only R/calculateAverageSpectra.R | 56 ++- R/calculateICI.R | 14 R/calculateModuleData.R | 621 +++++++++++++++++++++++++--------------- R/data.R | 2 R/filter.R | 30 - R/getDetectorData.R | 81 ++++- R/matchEnvData.R | 16 - R/processPgDetections.R | 121 +++++-- R/standardCepstrumCalcs.R | 4 R/utils.R | 41 +- data/testCeps.rda |binary man/PAMpalSettings.Rd | 5 man/addDatabase.Rd | 2 man/addFunction.Rd | 2 man/bindStudies.Rd |only man/calculateAverageSpectra.Rd | 9 man/calculateICI.Rd | 5 man/filter.Rd | 16 - man/getDetectorData.Rd | 30 + man/matchEnvData.Rd | 11 man/processPgDetections.Rd | 2 man/testCeps.Rd | 2 man/testGPL.Rd | 42 +- tests/testthat/test-workStudy.R | 22 + 34 files changed, 894 insertions(+), 435 deletions(-)
Title: Functions for Tabular Reporting
Description: Create pretty tables for 'HTML', 'PDF', 'Microsoft Word' and 'Microsoft PowerPoint'
documents from 'R Markdown'. Functions are provided to let users create tables, modify and format
their content. It also extends package 'officer' that does not contain any feature for customized
tabular reporting.
Author: David Gohel [aut, cre],
Clementine Jager [ctb],
Quentin Fazilleau [ctb],
Maxim Nazarov [ctb] ,
Titouan Robert [ctb],
Michael Barrowman [ctb] ,
Atsushi Yasumoto [ctb] ,
Paul Julian [ctb]
Maintainer: David Gohel <david.gohel@ardata.fr>
Diff between flextable versions 0.6.10 dated 2021-11-15 and 0.7.0 dated 2022-03-06
DESCRIPTION | 6 MD5 | 243 ++++++++++++++++++++------------------- NAMESPACE | 13 ++ NEWS.md | 37 +++++ R/01_fpstruct.R | 11 - R/05_content.R | 14 +- R/append_chunk.R |only R/as_flextable.R | 10 - R/as_flextable_gam.R | 2 R/as_flextable_tabulator.R |only R/body_add_flextable.R | 12 + R/borders.R | 24 +-- R/chunk_images.R | 10 - R/compose.R | 9 + R/defaults.R | 7 - R/df_printer.R | 4 R/docx_str.R | 40 ++---- R/flextable.R | 19 ++- R/flextable_sizes.R | 30 ++-- R/footnote.R | 4 R/format_fun.R | 9 - R/formatters.R | 47 +++++-- R/latex_str.R | 45 +++++++ R/merge_flextable.R | 8 - R/printers.R | 84 +++++++------ R/set_headers.R | 16 +- R/styles.R | 48 ++++--- R/summarizor.R |only R/tabpart_format.R | 7 - R/themes.R | 16 +- R/xtable_to_flextable.R | 6 build/vignette.rds |binary inst/doc/overview.html | 197 +++++++++++++++++++++++++++++++ man/add_header.Rd | 2 man/add_header_lines.Rd | 4 man/add_header_row.Rd | 2 man/add_latex_dep.Rd |only man/align.Rd | 2 man/append_chunks.Rd |only man/as_b.Rd | 2 man/as_bracket.Rd | 2 man/as_chunk.Rd | 2 man/as_flextable.Rd | 1 man/as_flextable.gam.Rd | 3 man/as_flextable.glm.Rd | 3 man/as_flextable.grouped_data.Rd | 3 man/as_flextable.htest.Rd | 3 man/as_flextable.lm.Rd | 3 man/as_flextable.tabulator.Rd |only man/as_flextable.xtable.Rd | 7 - man/as_i.Rd | 2 man/as_image.Rd | 2 man/as_paragraph.Rd | 2 man/as_sub.Rd | 2 man/as_sup.Rd | 2 man/autofit.Rd | 4 man/bg.Rd | 4 man/body_add_flextable.Rd | 6 man/bold.Rd | 2 man/border_inner.Rd | 2 man/border_inner_h.Rd | 2 man/border_inner_v.Rd | 2 man/border_outer.Rd | 2 man/border_remove.Rd | 4 man/colformat_char.Rd | 2 man/colformat_date.Rd | 2 man/colformat_datetime.Rd | 2 man/colformat_double.Rd | 4 man/colformat_image.Rd | 2 man/colformat_num.Rd | 28 ++++ man/color.Rd | 4 man/compose.Rd | 2 man/continuous_summary.Rd | 2 man/delete_part.Rd | 2 man/df_printer.Rd | 2 man/empty_blanks.Rd | 10 + man/figures/fig_summarizor_1.png |only man/figures/fig_summarizor_2.png |only man/figures/fig_tabulator_1.png |only man/figures/fig_tabulator_2.png |only man/fit_to_width.Rd | 4 man/flextable.Rd | 2 man/flextable_to_rmd.Rd | 9 + man/fmt_2stats.Rd |only man/font.Rd | 4 man/fontsize.Rd | 2 man/footnote.Rd | 4 man/gg_chunk.Rd | 2 man/height.Rd | 6 man/highlight.Rd | 2 man/hline.Rd | 2 man/hline_bottom.Rd | 2 man/hline_top.Rd | 2 man/hrule.Rd | 8 - man/italic.Rd | 2 man/knit_print.flextable.Rd | 35 ++++- man/line_spacing.Rd | 2 man/lollipop.Rd | 2 man/merge_h_range.Rd | 2 man/merge_none.Rd | 2 man/merge_v.Rd | 4 man/minibar.Rd | 2 man/padding.Rd | 2 man/plot_chunk.Rd | 2 man/rotate.Rd | 2 man/set_caption.Rd | 16 +- man/set_flextable_defaults.Rd | 8 - man/set_formatter.Rd | 2 man/set_header_footer_df.Rd | 4 man/set_header_labels.Rd | 2 man/set_table_properties.Rd | 6 man/style.Rd | 2 man/summarizor.Rd |only man/tabulator.Rd |only man/theme_alafoli.Rd | 2 man/theme_booktabs.Rd | 2 man/theme_box.Rd | 2 man/theme_tron.Rd | 2 man/theme_tron_legacy.Rd | 2 man/theme_vader.Rd | 2 man/theme_vanilla.Rd | 2 man/theme_zebra.Rd | 2 man/use_df_printer.Rd | 2 man/valign.Rd | 4 man/vline.Rd | 2 man/vline_left.Rd | 2 man/vline_right.Rd | 2 man/width.Rd | 2 tests/testthat/test-captions.R | 3 129 files changed, 862 insertions(+), 434 deletions(-)
Title: Access 'Nomis' UK Labour Market Data
Description: Access UK official statistics from the 'Nomis' database.
'Nomis' includes data from the Census, the Labour Force Survey, DWP benefit
statistics and other economic and demographic data from the Office for
National Statistics, based around statistical geographies. See
<https://www.nomisweb.co.uk/api/v01/help> for full API documentation.
Author: Evan Odell [aut, cre] ,
Paul Egeler [rev, ctb],
Christophe Dervieux [rev] ,
Nina Robery [ctb]
Maintainer: Evan Odell <evanodell91@gmail.com>
Diff between nomisr versions 0.4.5 dated 2022-02-05 and 0.4.6 dated 2022-03-06
DESCRIPTION | 6 - MD5 | 16 ++-- R/data_download.R | 14 --- R/utils-get-data.R | 23 ++--- inst/doc/introduction.R | 110 +++++++++++++++------------ inst/doc/introduction.Rmd | 28 +++---- inst/doc/introduction.html | 164 +++++++---------------------------------- tests/testthat/test_get_data.R | 17 ---- vignettes/introduction.Rmd | 28 +++---- 9 files changed, 143 insertions(+), 263 deletions(-)
Title: Clustering by Fast Search and Find of Density Peaks
Description: An improved implementation (based on k-nearest neighbors) of the
density peak clustering algorithm, originally described by Alex Rodriguez
and Alessandro Laio (Science, 2014 vol. 344) <DOI: 10.1126/science.1242072>.
It can handle large datasets (> 100, 000 samples) very efficiently. It was
initially implemented by Thomas Lin Pedersen, with inputs from Sean Hughes
and later improved by Xiaojie Qiu to handle large datasets with kNNs.
Author: Thomas Lin Pedersen [aut, cre],
Sean Hughes [aut],
Xiaojie Qiu [aut]
Maintainer: Thomas Lin Pedersen <thomasp85@gmail.com>
Diff between densityClust versions 0.3.1 dated 2022-02-21 and 0.3.2 dated 2022-03-06
DESCRIPTION | 6 +++--- MD5 | 7 ++++--- NEWS.md |only R/densityClust.R | 6 +++--- src/RcppExports.cpp | 5 +++++ 5 files changed, 15 insertions(+), 9 deletions(-)
Title: Risk Measure Calculation in Financial TS
Description: Enables the user to calculate Value at Risk (VaR) and Expected
Shortfall (ES) by means of various parametric and semiparametric
GARCH-type models. For the latter the estimation of the nonparametric scale
function is carried out by means of a data-driven smoothing approach. Model
quality, in terms of forecasting VaR and ES, can be assessed by means of
various backtesting methods such as the traffic light test for VaR and a
newly developed traffic light test for ES. The approaches implemented in
this package are described in e.g. Feng Y., Beran J., Letmathe S. and
Ghosh S. (2020) <https://ideas.repec.org/p/pdn/ciepap/137.html> as well as
Letmathe S., Feng Y. and Uhde A. (2021)
<https://ideas.repec.org/p/pdn/ciepap/141.html>.
Author: Yuanhua Feng [aut] ,
Xuehai Zhang [aut] ,
Christian Peitz [aut] ,
Dominik Schulz [aut] ,
Shujie Li [aut] ,
Sebastian Letmathe [aut, cre]
Maintainer: Sebastian Letmathe <sebastian.letmathe@uni-paderborn.de>
Diff between ufRisk versions 1.0.2 dated 2022-02-22 and 1.0.3 dated 2022-03-06
DESCRIPTION | 13 +++++++------ MD5 | 14 +++++++------- NEWS.md | 5 +++++ R/covtest.R | 8 ++++---- R/lossfunc.R | 6 +++--- R/ufRisk.R | 2 +- R/varcast.R | 2 +- man/ufRisk.Rd | 2 +- 8 files changed, 29 insertions(+), 23 deletions(-)
Title: Nanosecond-Resolution Time Support for R
Description: Full 64-bit resolution date and time functionality with
nanosecond granularity is provided, with easy transition to and from
the standard 'POSIXct' type. Three additional classes offer interval,
period and duration functionality for nanosecond-resolution timestamps.
Author: Dirk Eddelbuettel and Leonardo Silvestri
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between nanotime versions 0.3.5 dated 2021-12-14 and 0.3.6 dated 2022-03-06
ChangeLog | 19 +++++++++++++++++-- DESCRIPTION | 9 +++++---- MD5 | 26 +++++++++++++------------- NAMESPACE | 2 +- R/nanoduration.R | 8 ++++---- R/nanoival.R | 21 ++++++++++----------- R/nanoperiod.R | 4 ++-- R/nanotime.R | 10 +++++----- README.md | 2 +- inst/NEWS.Rd | 9 +++++++++ inst/doc/nanotime-introduction.pdf |binary inst/tinytest/test_nanoperiod.R | 4 ++++ man/set_operations.Rd | 3 +++ src/period.cpp | 8 +++++++- 14 files changed, 81 insertions(+), 44 deletions(-)
Title: Support for Spatial Objects Within the 'mlr3' Ecosystem
Description: Extends the 'mlr3' ML framework with methods for spatial
objects. Data storage and prediction are supported for packages
'terra', 'raster' and 'stars'.
Author: Marc Becker [aut, cre] ,
Patrick Schratz [aut]
Maintainer: Marc Becker <marcbecker@posteo.de>
Diff between mlr3spatial versions 0.1.1 dated 2022-01-20 and 0.1.2 dated 2022-03-06
DESCRIPTION | 7 -- MD5 | 22 +++--- NEWS.md | 9 +- R/DataBackendRaster.R | 5 - inst/doc/benchmark.html | 1 inst/doc/mlr3spatial.R | 4 - inst/doc/mlr3spatial.Rmd | 6 - inst/doc/mlr3spatial.html | 110 ++++++++++++++++---------------- tests/testthat.R | 7 -- tests/testthat/setup-backends.R | 2 tests/testthat/test-DataBackendRaster.R | 18 ++--- vignettes/mlr3spatial.Rmd | 6 - 12 files changed, 102 insertions(+), 95 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-08-28 0.2-1
2011-08-17 0.1-1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-07-06 1.2
2010-04-15 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2010-02-07 0.0-1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2009-02-24 1.1.2
2006-04-05 1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2010-08-08 2.2
2008-12-14 2.1
2008-07-14 2.0
2007-03-05 0.1.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2009-04-28 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-07-12 0.1.1
2016-05-05 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2009-10-27 4.1
2009-01-20 4.0
Title: Manipulate DESCRIPTION Files
Description: Tools to read, write, create, and manipulate DESCRIPTION
files. It is intended for packages that create or manipulate other
packages.
Author: Gábor Csárdi [aut, cre],
Kirill Müller [aut],
Jim Hester [aut],
Maëlle Salmon [ctb] ,
RStudio [cph, fnd]
Maintainer: Gábor Csárdi <csardi.gabor@gmail.com>
Diff between desc versions 1.4.0 dated 2021-09-28 and 1.4.1 dated 2022-03-06
desc-1.4.0/desc/inst/README.html |only desc-1.4.1/desc/DESCRIPTION | 59 +- desc-1.4.1/desc/MD5 | 168 +++--- desc-1.4.1/desc/NAMESPACE | 5 desc-1.4.1/desc/NEWS.md | 5 desc-1.4.1/desc/R/authors-at-r.R | 79 +-- desc-1.4.1/desc/R/constants.R | 2 desc-1.4.1/desc/R/deps.R | 2 desc-1.4.1/desc/R/desc-package.R |only desc-1.4.1/desc/R/description.R | 556 +++++++++++----------- desc-1.4.1/desc/R/encoding.R | 8 desc-1.4.1/desc/R/non-oo-api.R | 124 ++-- desc-1.4.1/desc/R/str.R | 26 - desc-1.4.1/desc/R/syntax_checks.R | 2 desc-1.4.1/desc/R/utils.R | 56 +- desc-1.4.1/desc/README.md | 90 ++- desc-1.4.1/desc/inst/README.Rmd | 198 +++++++ desc-1.4.1/desc/inst/WORDLIST | 7 desc-1.4.1/desc/man/check_field.Rd | 4 desc-1.4.1/desc/man/desc-package.Rd |only desc-1.4.1/desc/man/desc.Rd | 12 desc-1.4.1/desc/man/desc_add_author.Rd | 2 desc-1.4.1/desc/man/desc_add_author_gh.Rd | 4 desc-1.4.1/desc/man/desc_add_me.Rd | 4 desc-1.4.1/desc/man/desc_add_orcid.Rd | 2 desc-1.4.1/desc/man/desc_add_remotes.Rd | 2 desc-1.4.1/desc/man/desc_add_role.Rd | 2 desc-1.4.1/desc/man/desc_add_to_collate.Rd | 2 desc-1.4.1/desc/man/desc_add_urls.Rd | 2 desc-1.4.1/desc/man/desc_bump_version.Rd | 14 desc-1.4.1/desc/man/desc_change_maintainer.Rd | 2 desc-1.4.1/desc/man/desc_clear_remotes.Rd | 2 desc-1.4.1/desc/man/desc_clear_urls.Rd | 2 desc-1.4.1/desc/man/desc_coerce_authors_at_r.Rd | 17 desc-1.4.1/desc/man/desc_del.Rd | 2 desc-1.4.1/desc/man/desc_del_author.Rd | 2 desc-1.4.1/desc/man/desc_del_collate.Rd | 2 desc-1.4.1/desc/man/desc_del_dep.Rd | 2 desc-1.4.1/desc/man/desc_del_deps.Rd | 2 desc-1.4.1/desc/man/desc_del_from_collate.Rd | 2 desc-1.4.1/desc/man/desc_del_remotes.Rd | 2 desc-1.4.1/desc/man/desc_del_role.Rd | 2 desc-1.4.1/desc/man/desc_del_urls.Rd | 2 desc-1.4.1/desc/man/desc_get.Rd | 2 desc-1.4.1/desc/man/desc_get_author.Rd | 2 desc-1.4.1/desc/man/desc_get_authors.Rd | 2 desc-1.4.1/desc/man/desc_get_built.Rd | 6 desc-1.4.1/desc/man/desc_get_deps.Rd | 4 desc-1.4.1/desc/man/desc_get_field.Rd | 4 desc-1.4.1/desc/man/desc_get_maintainer.Rd | 2 desc-1.4.1/desc/man/desc_get_remotes.Rd | 2 desc-1.4.1/desc/man/desc_get_urls.Rd | 2 desc-1.4.1/desc/man/desc_get_version.Rd | 2 desc-1.4.1/desc/man/desc_has_dep.Rd | 2 desc-1.4.1/desc/man/desc_set.Rd | 4 desc-1.4.1/desc/man/desc_set_authors.Rd | 4 desc-1.4.1/desc/man/desc_set_collate.Rd | 2 desc-1.4.1/desc/man/desc_set_dep.Rd | 2 desc-1.4.1/desc/man/desc_set_deps.Rd | 4 desc-1.4.1/desc/man/desc_set_remotes.Rd | 2 desc-1.4.1/desc/man/desc_set_urls.Rd | 2 desc-1.4.1/desc/man/desc_set_version.Rd | 7 desc-1.4.1/desc/man/description.Rd | 474 +++++++++--------- desc-1.4.1/desc/tests/testthat.R | 8 desc-1.4.1/desc/tests/testthat/D13 |only desc-1.4.1/desc/tests/testthat/D14 |only desc-1.4.1/desc/tests/testthat/D15 |only desc-1.4.1/desc/tests/testthat/_snaps/str.md | 2 desc-1.4.1/desc/tests/testthat/helper.R | 2 desc-1.4.1/desc/tests/testthat/test-authors.R | 167 ++++-- desc-1.4.1/desc/tests/testthat/test-built.R | 2 desc-1.4.1/desc/tests/testthat/test-checks.R | 4 desc-1.4.1/desc/tests/testthat/test-collate.R | 12 desc-1.4.1/desc/tests/testthat/test-create.R | 4 desc-1.4.1/desc/tests/testthat/test-deps.R | 25 desc-1.4.1/desc/tests/testthat/test-desc.R | 4 desc-1.4.1/desc/tests/testthat/test-encoding.R | 6 desc-1.4.1/desc/tests/testthat/test-idempotent.R | 6 desc-1.4.1/desc/tests/testthat/test-non-oo.R | 20 desc-1.4.1/desc/tests/testthat/test-queries.R | 18 desc-1.4.1/desc/tests/testthat/test-read.R | 8 desc-1.4.1/desc/tests/testthat/test-remotes.R | 2 desc-1.4.1/desc/tests/testthat/test-str.R | 14 desc-1.4.1/desc/tests/testthat/test-to_latex.R | 6 desc-1.4.1/desc/tests/testthat/test-trailing-ws.R | 10 desc-1.4.1/desc/tests/testthat/test-urls.R | 4 desc-1.4.1/desc/tests/testthat/test-utils.R | 16 desc-1.4.1/desc/tests/testthat/test-versions.R | 8 88 files changed, 1357 insertions(+), 1000 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2010-01-28 0.9
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-05-03 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-01-03 0.5
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-02-24 0.2-1
2008-03-24 0.1-1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-07-09 0.1.1
2016-07-06 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2009-10-12 0.6-0
2009-01-26 0.5-0
2008-09-15 0.4-0
2006-09-11 0.3-0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-04-06 0.3
2009-10-15 0.2
2009-03-25 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2010-09-17 1.0-1
2008-09-07 1.0-0
2008-07-20 0.9-5
2008-07-15 0.9-4
2008-07-05 0.9-3
2008-06-23 0.9-2
2008-06-11 0.9-1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2010-10-27 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-08-03 2.0.1
2016-05-14 2.0.0
2016-03-17 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-10-26 0.1-0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2010-03-16 4.5
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2010-02-16 1.4.2
2008-12-06 1.4.1
2008-10-14 1.3
2008-08-08 1.2
2008-08-06 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2010-09-29 0.1-4
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-12-30 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-01-20 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2009-12-03 0.1-1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2009-08-08 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2009-06-04 1.2-0
2008-12-15 1.1-1
2008-09-15 1.1-0
2007-07-23 1.0-1
2007-05-07 1.0-0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2010-12-06 0.1.1
Title: Statistical Toolbox for Radiometric Geochronology
Description: Plots U-Pb data on Wetherill and Tera-Wasserburg concordia diagrams. Calculates concordia and discordia ages. Performs linear regression of measurements with correlated errors using 'York', 'Titterington' and 'Ludwig' approaches. Generates Kernel Density Estimates (KDEs) and Cumulative Age Distributions (CADs). Produces Multidimensional Scaling (MDS) configurations and Shepard plots of multi-sample detrital datasets using the Kolmogorov-Smirnov distance as a dissimilarity measure. Calculates 40Ar/39Ar ages, isochrons, and age spectra. Computes weighted means accounting for overdispersion. Calculates U-Th-He (single grain and central) ages, logratio plots and ternary diagrams. Processes fission track data using the external detector method and LA-ICP-MS, calculates central ages and plots fission track and other data on radial (a.k.a. 'Galbraith') plots. Constructs total Pb-U, Pb-Pb, Th-Pb, K-Ca, Re-Os, Sm-Nd, Lu-Hf, Rb-Sr and 230Th-U isochrons as well as 230Th-U evolution plots.
Author: Pieter Vermeesch [aut, cre]
Maintainer: Pieter Vermeesch <p.vermeesch@ucl.ac.uk>
Diff between IsoplotR versions 4.2 dated 2021-10-20 and 4.3 dated 2022-03-06
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ R/commonPb.R | 9 +++++---- R/errorellipse.R | 3 ++- R/io.R | 6 ++++-- R/ludwig.R | 4 ++-- R/toolbox.R | 12 ++++++++++-- 7 files changed, 33 insertions(+), 21 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-11-22 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-06-03 1.0
2016-01-14 0.3
2015-12-02 0.2
2015-09-04 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-02-28 3.0-8
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-11-16 2.0
2008-04-27 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2009-06-08 0.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2009-02-01 0.0-2
2006-10-19 0.0-1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-12-11 1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-04-24 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-07-23 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-11-02 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-09-04 1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2009-02-01 0.0-2
2007-05-06 0.0-1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2009-05-05 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-08-19 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2009-11-25 0.1-1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-04-26 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2009-12-17 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-02-18 1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-09-30 1.1.0
2015-10-06 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-10-23 1.2
2011-10-19 1.1
2010-12-22 1.0
Title: 'Rcpp' Bindings for the 'Corpus Workbench' ('CWB')
Description: 'Rcpp' Bindings for the C code of the 'Corpus Workbench' ('CWB'), an indexing and query
engine to efficiently analyze large corpora (<https://cwb.sourceforge.io>). 'RcppCWB' is licensed
under the GNU GPL-3, in line with the GPL-3 license of the 'CWB' (<https://www.r-project.org/Licenses/GPL-3>).
The 'CWB' relies on 'pcre' (BSD license, see <http://www.pcre.org/licence.txt>)
and 'GLib' (LGPL license, see <https://www.gnu.org/licenses/lgpl-3.0.en.html>).
See the file LICENSE.note for further information. The package includes modified code of the
'rcqp' package (GPL-2, see <https://cran.r-project.org/package=rcqp>). The original work of the authors
of the 'rcqp' package is acknowledged with great respect, and they are listed as authors of this
package. To achieve cross-platform portability (including Windows), using 'Rcpp' for wrapper code
is the approach used by 'RcppCWB'.
Author: Andreas Blaette [aut, cre],
Bernard Desgraupes [aut],
Sylvain Loiseau [aut],
Oliver Christ [ctb],
Bruno Maximilian Schulze [ctb],
Stefan Evert [ctb],
Arne Fitschen [ctb],
Jeroen Ooms [ctb],
Marius Bertram [ctb],
Tomas Kalibera [ctb]
Maintainer: Andreas Blaette <andreas.blaette@uni-due.de>
Diff between RcppCWB versions 0.5.0 dated 2022-02-01 and 0.5.1 dated 2022-03-06
RcppCWB-0.5.0/RcppCWB/src/cwb/editline |only RcppCWB-0.5.0/RcppCWB/src/wrappers.cpp |only RcppCWB-0.5.1/RcppCWB/DESCRIPTION | 20 RcppCWB-0.5.1/RcppCWB/MD5 | 186 RcppCWB-0.5.1/RcppCWB/NAMESPACE | 27 RcppCWB-0.5.1/RcppCWB/NEWS.md | 87 RcppCWB-0.5.1/RcppCWB/R/RcppCWB_package.R | 16 RcppCWB-0.5.1/RcppCWB/R/RcppExports.R | 124 RcppCWB-0.5.1/RcppCWB/R/cbow.R | 6 RcppCWB-0.5.1/RcppCWB/R/checks.R | 34 RcppCWB-0.5.1/RcppCWB/R/cl.R | 278 + RcppCWB-0.5.1/RcppCWB/R/count.R | 5 RcppCWB-0.5.1/RcppCWB/R/cqp.R | 90 RcppCWB-0.5.1/RcppCWB/R/cwb.R | 175 RcppCWB-0.5.1/RcppCWB/R/decode.R | 89 RcppCWB-0.5.1/RcppCWB/R/misc.R | 48 RcppCWB-0.5.1/RcppCWB/R/region_matrix.R | 44 RcppCWB-0.5.1/RcppCWB/R/xml.R | 38 RcppCWB-0.5.1/RcppCWB/configure | 38 RcppCWB-0.5.1/RcppCWB/inst/include/RcppCWB.h |only RcppCWB-0.5.1/RcppCWB/inst/include/RcppCWB_RcppExports.h |only RcppCWB-0.5.1/RcppCWB/man/RcppCWB-packge.Rd | 16 RcppCWB-0.5.1/RcppCWB/man/checks.Rd | 4 RcppCWB-0.5.1/RcppCWB/man/cl_attribute_size.Rd | 31 RcppCWB-0.5.1/RcppCWB/man/cl_find_corpus.Rd |only RcppCWB-0.5.1/RcppCWB/man/cl_lexicon_size.Rd | 16 RcppCWB-0.5.1/RcppCWB/man/cl_list_corpora.Rd |only RcppCWB-0.5.1/RcppCWB/man/cl_load_corpus.Rd |only RcppCWB-0.5.1/RcppCWB/man/cl_rework.Rd |only RcppCWB-0.5.1/RcppCWB/man/cqp_initialize.Rd | 21 RcppCWB-0.5.1/RcppCWB/man/cqp_list_corpora.Rd | 4 RcppCWB-0.5.1/RcppCWB/man/cqp_query.Rd | 10 RcppCWB-0.5.1/RcppCWB/man/cwb_charsets.Rd |only RcppCWB-0.5.1/RcppCWB/man/cwb_utils.Rd | 92 RcppCWB-0.5.1/RcppCWB/man/get_cbow_matrix.Rd | 6 RcppCWB-0.5.1/RcppCWB/man/get_count_vector.Rd | 5 RcppCWB-0.5.1/RcppCWB/man/get_region_matrix.Rd | 3 RcppCWB-0.5.1/RcppCWB/man/matrix_to_subcorpus.Rd |only RcppCWB-0.5.1/RcppCWB/man/p_attributes.Rd | 20 RcppCWB-0.5.1/RcppCWB/man/region_matrix_ops.Rd | 34 RcppCWB-0.5.1/RcppCWB/man/s_attr_regions.Rd | 2 RcppCWB-0.5.1/RcppCWB/man/s_attribute_decode.Rd | 27 RcppCWB-0.5.1/RcppCWB/man/s_attributes.Rd | 48 RcppCWB-0.5.1/RcppCWB/man/subcorpus_get_ranges.Rd |only RcppCWB-0.5.1/RcppCWB/man/xml.Rd | 13 RcppCWB-0.5.1/RcppCWB/src/RcppExports.cpp | 2084 +++++++++- RcppCWB-0.5.1/RcppCWB/src/addons.cpp | 220 + RcppCWB-0.5.1/RcppCWB/src/cl.cpp |only RcppCWB-0.5.1/RcppCWB/src/cqp.cpp |only RcppCWB-0.5.1/RcppCWB/src/cwb/cl/attributes.c | 8 RcppCWB-0.5.1/RcppCWB/src/cwb/cl/cdaccess.c | 7 RcppCWB-0.5.1/RcppCWB/src/cwb/cl/corpus.c | 3 RcppCWB-0.5.1/RcppCWB/src/cwb/cl/lex.creg.c | 883 ++-- RcppCWB-0.5.1/RcppCWB/src/cwb/cl/storage.c | 8 RcppCWB-0.5.1/RcppCWB/src/cwb/cqp/corpmanag.c | 5 RcppCWB-0.5.1/RcppCWB/src/cwb/cqp/corpmanag.h | 1 RcppCWB-0.5.1/RcppCWB/src/cwb/cqp/lex.yy.c | 414 + RcppCWB-0.5.1/RcppCWB/src/cwb/cqp/output.c | 18 RcppCWB-0.5.1/RcppCWB/src/cwb/cqp/parse_actions.c | 4 RcppCWB-0.5.1/RcppCWB/src/cwb/utils/cwb-encode.c | 25 RcppCWB-0.5.1/RcppCWB/src/cwb/utils/cwb-huffcode.c | 12 RcppCWB-0.5.1/RcppCWB/src/utils.cpp |only RcppCWB-0.5.1/RcppCWB/tests/testthat/test_attribute_size.R | 32 RcppCWB-0.5.1/RcppCWB/tests/testthat/test_cpos2id.R | 20 RcppCWB-0.5.1/RcppCWB/tests/testthat/test_cpos2lbound.R | 36 RcppCWB-0.5.1/RcppCWB/tests/testthat/test_cpos2str.R | 20 RcppCWB-0.5.1/RcppCWB/tests/testthat/test_cpos2struc.R | 17 RcppCWB-0.5.1/RcppCWB/tests/testthat/test_cwb_encode.R | 92 RcppCWB-0.5.1/RcppCWB/tests/testthat/test_delete_corpus.R | 17 RcppCWB-0.5.1/RcppCWB/tests/testthat/test_get_cbow_matrix.R | 4 RcppCWB-0.5.1/RcppCWB/tests/testthat/test_get_count_vector.R | 4 RcppCWB-0.5.1/RcppCWB/tests/testthat/test_get_region_matrix.R | 2 RcppCWB-0.5.1/RcppCWB/tests/testthat/test_id2cpos.R | 18 RcppCWB-0.5.1/RcppCWB/tests/testthat/test_id2freq.R | 18 RcppCWB-0.5.1/RcppCWB/tests/testthat/test_id2str.R | 4 RcppCWB-0.5.1/RcppCWB/tests/testthat/test_lexicon_size.R | 17 RcppCWB-0.5.1/RcppCWB/tests/testthat/test_regex2id.R | 17 RcppCWB-0.5.1/RcppCWB/tests/testthat/test_region_matrix_to_count_matrix.R | 4 RcppCWB-0.5.1/RcppCWB/tests/testthat/test_region_matrix_to_ids.R | 2 RcppCWB-0.5.1/RcppCWB/tests/testthat/test_s_attribute_decode.R | 13 RcppCWB-0.5.1/RcppCWB/tests/testthat/test_str2id.R | 17 RcppCWB-0.5.1/RcppCWB/tests/testthat/test_struc2cpos.R | 17 RcppCWB-0.5.1/RcppCWB/tests/testthat/test_struc2str.R | 16 RcppCWB-0.5.1/RcppCWB/tests/testthat/test_subcorpus.R |only 84 files changed, 4558 insertions(+), 1178 deletions(-)
Title: Collection of Tools for PD Rating Model Development and
Validation
Description: The goal of this package is to cover the most common steps in probability of default (PD) rating model development and validation.
The main procedures available are those that refer to univariate, bivariate, multivariate analysis, calibration and validation.
Along with accompanied 'monobin' and 'monobinShiny' packages, 'PDtoolkit' provides functions which are suitable for different
data transformation and modeling tasks such as:
imputations, monotonic binning of numeric risk factors, binning of categorical risk factors, weights of evidence (WoE) and
information value (IV) calculations, WoE coding (replacement of risk factors modalities with WoE values), risk factor clustering,
area under curve (AUC) calculation and others. Additionally, package provides set of validation functions for testing homogeneity,
heterogeneity, discriminatory and predictive power of the model.
Author: Andrija Djurovic [aut, cre]
Maintainer: Andrija Djurovic <djandrija@gmail.com>
Diff between PDtoolkit versions 0.1.0 dated 2022-02-04 and 0.2.0 dated 2022-03-06
DESCRIPTION | 6 +- MD5 | 32 ++++++----- NAMESPACE | 110 +++++++++++++++++++++-------------------- NEWS.md | 10 +++ R/00_GLOBALS.R | 2 R/02_BIVARIATE_ANALYSIS.R | 4 - R/04_RF_CLUSTERING.R | 16 ++++- R/05_STEP_MIV.R | 47 ++++++++++------- R/07_SEGMENT_VLD.R | 3 + R/08_SCALED_SCORE.R | 2 R/10_HETEROGENEITY.R | 2 R/17_EVRS.R |only R/18_INTERACTION_TRANSFORMER.R |only README.md | 4 - build/partial.rdb |binary man/evrs.Rd |only man/interaction.transformer.Rd |only man/scaled.score.Rd | 2 man/stepMIV.Rd | 18 +++--- 19 files changed, 149 insertions(+), 109 deletions(-)
Title: Repeated Measurement Models for Discrete Times
Description: Companion R package for the course "Statistical analysis of correlated and repeated measurements for health science researchers"
taught by the section of Biostatistics of the University of Copenhagen.
It implements linear mixed models where the model for the variance-covariance of the residuals is specified via patterns (compound symmetry, unstructured).
Statistical inference for mean, variance, and correlation parameters is performed based on the observed information and a Satterthwaite degrees of freedom.
Normalized residuals are provided to assess model misspecification.
Statistical inference can be performed for arbitrary linear combination(s) of model coefficients.
Predictions can be computed conditional to covariates only or also to outcome values.
Author: Brice Ozenne [aut, cre] ,
Julie Forman [aut]
Maintainer: Brice Ozenne <brice.mh.ozenne@gmail.com>
Diff between LMMstar versions 0.4.4 dated 2022-01-03 and 0.5.2 dated 2022-03-06
LMMstar-0.4.4/LMMstar/R/confint.R |only LMMstar-0.4.4/LMMstar/R/print.R |only LMMstar-0.4.4/LMMstar/R/summary.R |only LMMstar-0.5.2/LMMstar/DESCRIPTION | 29 LMMstar-0.5.2/LMMstar/MD5 | 141 LMMstar-0.5.2/LMMstar/NAMESPACE | 6 LMMstar-0.5.2/LMMstar/R/LMMstar-package.R | 2 LMMstar-0.5.2/LMMstar/R/LMMstar.options.R | 6 LMMstar-0.5.2/LMMstar/R/anova.R | 207 - LMMstar-0.5.2/LMMstar/R/autoplot.R | 15 LMMstar-0.5.2/LMMstar/R/confint.anova_lmm.R |only LMMstar-0.5.2/LMMstar/R/confint.lmm.R |only LMMstar-0.5.2/LMMstar/R/df.R | 34 LMMstar-0.5.2/LMMstar/R/doc-data.R | 28 LMMstar-0.5.2/LMMstar/R/emmeans.R | 6 LMMstar-0.5.2/LMMstar/R/estimate.R | 180 - LMMstar-0.5.2/LMMstar/R/fitted.R | 8 LMMstar-0.5.2/LMMstar/R/getVarCov.R | 6 LMMstar-0.5.2/LMMstar/R/iid.R | 39 LMMstar-0.5.2/LMMstar/R/information.R | 99 LMMstar-0.5.2/LMMstar/R/lmm.R | 125 LMMstar-0.5.2/LMMstar/R/logLik.R | 84 LMMstar-0.5.2/LMMstar/R/model.matrix.R | 63 LMMstar-0.5.2/LMMstar/R/moments.R | 87 LMMstar-0.5.2/LMMstar/R/plot.R | 12 LMMstar-0.5.2/LMMstar/R/precompute.R | 6 LMMstar-0.5.2/LMMstar/R/predict.R | 6 LMMstar-0.5.2/LMMstar/R/print.anova_lmm.R |only LMMstar-0.5.2/LMMstar/R/print.lmm.R |only LMMstar-0.5.2/LMMstar/R/rbind.anova_lmm.R |only LMMstar-0.5.2/LMMstar/R/residuals.R | 99 LMMstar-0.5.2/LMMstar/R/score.R | 42 LMMstar-0.5.2/LMMstar/R/structure-initialization.R | 97 LMMstar-0.5.2/LMMstar/R/structure-skeleton.R | 144 LMMstar-0.5.2/LMMstar/R/structure.R | 103 LMMstar-0.5.2/LMMstar/R/summary.anova_lmm.R |only LMMstar-0.5.2/LMMstar/R/summary.lmm.R |only LMMstar-0.5.2/LMMstar/R/transformSummaryTable.R |only LMMstar-0.5.2/LMMstar/R/vcov.R | 19 LMMstar-0.5.2/LMMstar/inst/doc-software/bibliography.bib | 20 LMMstar-0.5.2/LMMstar/inst/doc-software/figures/diag-correlation.pdf |binary LMMstar-0.5.2/LMMstar/inst/doc-software/figures/diag-qqplot.pdf |binary LMMstar-0.5.2/LMMstar/inst/doc-software/figures/diag-scatterplot.pdf |binary LMMstar-0.5.2/LMMstar/inst/doc-software/figures/diag-scatterplot2.pdf |binary LMMstar-0.5.2/LMMstar/inst/doc-software/figures/fit-autoplot.pdf |binary LMMstar-0.5.2/LMMstar/inst/doc-software/figures/fit-emmip.pdf |binary LMMstar-0.5.2/LMMstar/inst/doc-software/figures/fit-pres.pdf |only LMMstar-0.5.2/LMMstar/inst/doc-software/figures/gg-baseAdj.pdf |binary LMMstar-0.5.2/LMMstar/inst/doc-software/figures/imputation.pdf |binary LMMstar-0.5.2/LMMstar/inst/doc-software/overview-compress.pdf |binary LMMstar-0.5.2/LMMstar/inst/doc-software/overview.aux | 99 LMMstar-0.5.2/LMMstar/inst/doc-software/overview.bbl | 7 LMMstar-0.5.2/LMMstar/inst/doc-software/overview.blg |only LMMstar-0.5.2/LMMstar/inst/doc-software/overview.fdb_latexmk |only LMMstar-0.5.2/LMMstar/inst/doc-software/overview.fls |only LMMstar-0.5.2/LMMstar/inst/doc-software/overview.log | 1795 +++++----- LMMstar-0.5.2/LMMstar/inst/doc-software/overview.org | 661 ++- LMMstar-0.5.2/LMMstar/inst/doc-software/overview.out |only LMMstar-0.5.2/LMMstar/inst/doc-software/overview.pdf |binary LMMstar-0.5.2/LMMstar/inst/doc-software/overview.soc |only LMMstar-0.5.2/LMMstar/inst/doc-software/overview.tex | 677 ++- LMMstar-0.5.2/LMMstar/inst/doc/overview.pdf |binary LMMstar-0.5.2/LMMstar/man/CS.Rd | 5 LMMstar-0.5.2/LMMstar/man/ID.Rd | 4 LMMstar-0.5.2/LMMstar/man/anova.Rd | 39 LMMstar-0.5.2/LMMstar/man/confint.Rd | 4 LMMstar-0.5.2/LMMstar/man/confint.anova_lmm.Rd |only LMMstar-0.5.2/LMMstar/man/estimate.lmm.Rd |only LMMstar-0.5.2/LMMstar/man/iid.lmm.Rd |only LMMstar-0.5.2/LMMstar/man/lmm.Rd | 25 LMMstar-0.5.2/LMMstar/man/plot.Rd | 2 LMMstar-0.5.2/LMMstar/man/rbind.anova_lmm.Rd |only LMMstar-0.5.2/LMMstar/man/residuals.Rd | 8 LMMstar-0.5.2/LMMstar/man/summary.Rd | 4 LMMstar-0.5.2/LMMstar/man/summary.anova_lmm.Rd |only LMMstar-0.5.2/LMMstar/man/transformSummaryTable.Rd |only LMMstar-0.5.2/LMMstar/man/vcov.Rd | 2 LMMstar-0.5.2/LMMstar/man/vitaminL.Rd | 12 LMMstar-0.5.2/LMMstar/man/vitaminW.Rd | 12 LMMstar-0.5.2/LMMstar/tests/testthat/test-auto-estimate.R |only LMMstar-0.5.2/LMMstar/tests/testthat/test-auto-mmm.R |only LMMstar-0.5.2/LMMstar/tests/testthat/test-auto-previous-bug.R | 52 LMMstar-0.5.2/LMMstar/tests/testthat/test-auto-ttest.R | 12 LMMstar-0.5.2/LMMstar/tests/testthat/test-manual-tutorial.R | 10 84 files changed, 3075 insertions(+), 2068 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-07-22 1.0.15
2015-04-01 1.0.12
2015-03-07 1.0.11
2013-04-03 1.0-7
2011-12-20 1.0-2
2011-12-19 1.0-1
Title: Relationship Between Species and Groups of Sites
Description: Functions to assess the strength and statistical significance of the relationship between species occurrence/abundance and groups of sites [De Caceres & Legendre (2009) <doi:10.1890/08-1823.1>]. Also includes functions to measure species niche breadth using resource categories [De Caceres et al. (2011) <doi:10.1111/J.1600-0706.2011.19679.x>].
Author: Miquel De Cáceres [aut, cre],
Florian Jansen [aut],
Noah Dell [aut]
Maintainer: Miquel De Cáceres <miquelcaceres@gmail.com>
Diff between indicspecies versions 1.7.11 dated 2022-03-04 and 1.7.12 dated 2022-03-06
DESCRIPTION | 8 MD5 | 10 NEWS.md | 3 R/multipatt.r | 4 inst/doc/IndicatorSpeciesAnalysis.html | 4628 ++------------------------------- inst/doc/PigeonExample.html | 20 6 files changed, 359 insertions(+), 4314 deletions(-)
Title: Download Flight and Airport Data from Brazil
Description: Download flight and airport data from Brazil’s Civil Aviation Agency
(ANAC) <https://www.gov.br/anac>. The data includes detailed
information on all aircrafts, aerodromes, airports, and airport
movements registered in ANAC, and on every international flight to
and from Brazil, as well as domestic flights within the country.
Author: Rafael H. M. Pereira [aut, cre]
,
Ipea - Institute for Applied Economic Research [cph, fnd]
Maintainer: Rafael H. M. Pereira <rafa.pereira.br@gmail.com>
Diff between flightsbr versions 0.1.0 dated 2022-02-08 and 0.1.1 dated 2022-03-06
flightsbr-0.1.0/flightsbr/man/split_date.Rd |only flightsbr-0.1.1/flightsbr/DESCRIPTION | 10 flightsbr-0.1.1/flightsbr/MD5 | 45 - flightsbr-0.1.1/flightsbr/NAMESPACE | 3 flightsbr-0.1.1/flightsbr/NEWS.md | 9 flightsbr-0.1.1/flightsbr/R/flightsbr.R | 11 flightsbr-0.1.1/flightsbr/R/read_aircrafts.R | 22 flightsbr-0.1.1/flightsbr/R/read_airport_movements.R | 18 flightsbr-0.1.1/flightsbr/R/read_airports.R | 40 - flightsbr-0.1.1/flightsbr/R/read_flights.R | 13 flightsbr-0.1.1/flightsbr/R/utils.R | 311 ++++------ flightsbr-0.1.1/flightsbr/README.md | 8 flightsbr-0.1.1/flightsbr/inst/CITATION | 10 flightsbr-0.1.1/flightsbr/inst/doc/flights.Rmd | 2 flightsbr-0.1.1/flightsbr/inst/doc/flights.html | 2 flightsbr-0.1.1/flightsbr/man/flightsbr.Rd | 7 flightsbr-0.1.1/flightsbr/man/latlon_to_numeric.Rd | 4 flightsbr-0.1.1/flightsbr/tests/testthat/test_check_date.R |only flightsbr-0.1.1/flightsbr/tests/testthat/test_get_airport_movement_dates_available.R |only flightsbr-0.1.1/flightsbr/tests/testthat/test_get_flight_dates_available.R |only flightsbr-0.1.1/flightsbr/tests/testthat/test_latest_flights_date.R |only flightsbr-0.1.1/flightsbr/tests/testthat/test_read_aircrafts.R | 7 flightsbr-0.1.1/flightsbr/tests/testthat/test_read_airport_movements.R | 3 flightsbr-0.1.1/flightsbr/tests/testthat/test_read_airports.R | 9 flightsbr-0.1.1/flightsbr/tests/testthat/test_read_flights.R | 10 flightsbr-0.1.1/flightsbr/vignettes/flights.Rmd | 2 26 files changed, 299 insertions(+), 247 deletions(-)
Title: Processes Binary Data Obtained from Fragment Analysis (Such as
AFLPs, ISSRs, and RFLPs)
Description: A molecular genetics tool that processes binary data from fragment analysis. It consolidates replicate sample pairs, outputs summary statistics, and produces hierarchical clustering trees and nMDS plots. This package was developed from the publication available here: <https://www.sciencedirect.com/science/article/pii/S1049964420306538>. The GUI version of this package is available on the R Shiny online server at: <https://clarkevansteenderen.shinyapps.io/BINMAT/> or it is accessible via GitHub by typing: shiny::runGitHub("BinMat", "clarkevansteenderen") into the console in R. Two real-world datasets accompany the package: an AFLP dataset of Bunias orientalis samples from Tewes et. al. (2017) <https://besjournals.onlinelibrary.wiley.com/doi/full/10.1111/1365-2745.12869>, and an ISSR dataset of Nymphaea specimens from Reid et. al. (2021) <https://www.sciencedirect.com/science/article/pii/S0304377021000218> . The authors of these publications are thanked for allowing the use of their data.
Author: Clarke van Steenderen [aut, cre]
Maintainer: Clarke van Steenderen <vsteenderen@gmail.com>
Diff between BinMat versions 0.1.4 dated 2022-02-28 and 0.1.5 dated 2022-03-06
DESCRIPTION | 14 ++++---- MD5 | 32 +++++++++--------- NAMESPACE | 26 +++++++-------- R/BinMatInput_ordination.R | 4 -- R/BinMatInput_reps.R | 3 - R/bunias_orientalis.R | 11 +++--- R/nmds.R | 18 ++++------ R/nymphaea.R | 9 ++--- inst/doc/BinMat.R | 6 +-- inst/doc/BinMat.Rmd | 10 ++--- inst/doc/BinMat.html | 72 +++++++++++++++++++----------------------- man/BinMatInput_ordination.Rd | 3 - man/BinMatInput_reps.Rd | 2 - man/bunias_orientalis.Rd | 6 --- man/nmds.Rd | 7 ---- man/nymphaea.Rd | 7 ---- vignettes/BinMat.Rmd | 10 ++--- 17 files changed, 102 insertions(+), 138 deletions(-)
Title: Alternative Meta-Analysis Methods
Description: Provides alternative statistical methods for meta-analysis, including:
- bivariate generalized linear mixed models for synthesizing odds ratios, relative risks,
and risk differences
(Chu et al., 2012 <doi:10.1177/0962280210393712>)
- heterogeneity tests and measures that are robust to outliers
(Lin et al., 2017 <doi:10.1111/biom.12543>);
- measures, tests, and visualization tools for publication bias or small-study effects
(Lin and Chu, 2018 <doi:10.1111/biom.12817>;
Lin, 2019 <doi:10.1002/jrsm.1340>;
Lin, 2020 <doi:10.1177/0962280220910172>;
Shi et al., 2020 <doi:10.1002/jrsm.1415>);
- meta-analysis of diagnostic tests for synthesizing sensitivities, specificities, etc.
(Reitsma et al., 2005 <doi:10.1016/j.jclinepi.2005.02.022>;
Chu and Cole, 2006 <doi:10.1016/j.jclinepi.2006.06.011>);
- meta-analysis methods for synthesizing proportions
(Lin and Chu, 2020 <doi:10.1097/ede.0000000000001232>);
- models for multivariate meta-analysis, measures of inconsistency degrees of freedom
in Bayesian network meta-analysis, and predictive P-score
(Lin and Chu, 2018 <doi:10.1002/jrsm.1293>;
Lin, 2020 <doi:10.1080/10543406.2020.1852247>;
Rosenberger et al., 2021 <doi:10.1186/s12874-021-01397-5>).
Author: Lifeng Lin [aut, cre] ,
Linyu Shi [ctb],
Kristine J. Rosenberger [ctb],
Haitao Chu [aut]
Maintainer: Lifeng Lin <linl@stat.fsu.edu>
Diff between altmeta versions 3.3 dated 2021-03-15 and 4.0 dated 2022-03-06
DESCRIPTION | 28 ++-- MD5 | 48 ++++--- NAMESPACE | 4 R/metahet.R | 272 +++++++++++++++++++++-------------------- R/metaoutliers.R | 110 ++++++++-------- R/metapb.R | 217 ++++++++++++++++++++++---------- R/mvma.R | 18 +- R/mvma.bayesian.R | 290 ++++++++++++++++++++++---------------------- R/mvma.fe.R | 140 ++++++++++----------- R/mvma.hybrid.R | 257 ++++++++++++++++++++------------------ R/mvma.hybrid.bayesian.R | 286 ++++++++++++++++++++++--------------------- R/mvma.re.R | 200 +++++++++++++++--------------- R/nma.predrank.R |only R/pb.trimfill.R | 23 ++- build/partial.rdb |binary data/dat.sc.rda |only data/dat.xu.rda |only man/dat.sc.Rd |only man/dat.xu.Rd |only man/metahet.Rd | 17 +- man/metaoutliers.Rd | 15 +- man/metapb.Rd | 30 ++-- man/mvma.Rd | 11 + man/mvma.bayesian.Rd | 7 - man/mvma.hybrid.Rd | 5 man/mvma.hybrid.bayesian.Rd | 5 man/nma.icdf.Rd | 5 man/nma.predrank.Rd |only 28 files changed, 1071 insertions(+), 917 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-07-22 1.0-7
2015-03-13 1.0-6
2011-12-19 1.0-0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-07-28 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-07-22 1.0-16
2015-03-14 1.0-15
2012-04-13 1.0-9
2011-11-27 1.0-8
2011-02-27 1.0-4
2011-01-13 1.0-1
2011-01-06 1.0-0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-12-16 0.1.5
2019-03-26 0.1.4
2018-10-30 0.1.3