Title: Discrete Time Simulation of Mosquito-Borne Pathogen Transmission
Description: Provides a framework based on S3 dispatch for constructing models
of mosquito-borne pathogen transmission which are constructed from submodels of various
components (i.e. immature and adult mosquitoes, human populations). A consistent mathematical
expression for the distribution of bites on hosts means that different models
(stochastic, deterministic, etc.) can be coherently incorporated and updated
over a discrete time step.
Author: Sean L. Wu [aut, cre] ,
David L. Smith [aut] ,
Sophie Libkind [ctb]
Maintainer: Sean L. Wu <slwood89@gmail.com>
Diff between MicroMoB versions 0.0.9 dated 2022-02-01 and 0.0.11 dated 2022-03-08
MicroMoB-0.0.11/MicroMoB/DESCRIPTION | 12 MicroMoB-0.0.11/MicroMoB/MD5 | 141 ++++++---- MicroMoB-0.0.11/MicroMoB/NAMESPACE | 30 ++ MicroMoB-0.0.11/MicroMoB/NEWS.md | 20 + MicroMoB-0.0.11/MicroMoB/R/MicroMoB.R | 5 MicroMoB-0.0.11/MicroMoB/R/ModelObject.R | 9 MicroMoB-0.0.11/MicroMoB/R/api_mosquito.R |only MicroMoB-0.0.11/MicroMoB/R/aquatic_BH.R | 90 +++++- MicroMoB-0.0.11/MicroMoB/R/aquatic_interface.R | 12 MicroMoB-0.0.11/MicroMoB/R/aquatic_trace.R | 55 +++ MicroMoB-0.0.11/MicroMoB/R/humans_MOI.R | 76 +++++ MicroMoB-0.0.11/MicroMoB/R/humans_SIR.R | 65 ++++ MicroMoB-0.0.11/MicroMoB/R/humans_SIS.R | 63 ++++ MicroMoB-0.0.11/MicroMoB/R/mosquito_BQ.R |only MicroMoB-0.0.11/MicroMoB/R/mosquito_RM.R | 95 ++++++ MicroMoB-0.0.11/MicroMoB/R/mosquito_interface.R | 12 MicroMoB-0.0.11/MicroMoB/R/mosquito_trace.R | 38 ++ MicroMoB-0.0.11/MicroMoB/R/other_trace.R | 28 + MicroMoB-0.0.11/MicroMoB/R/utils.R | 5 MicroMoB-0.0.11/MicroMoB/R/utils_internal.R | 2 MicroMoB-0.0.11/MicroMoB/R/visitor_trace.R | 33 ++ MicroMoB-0.0.11/MicroMoB/README.md | 15 - MicroMoB-0.0.11/MicroMoB/build/vignette.rds |binary MicroMoB-0.0.11/MicroMoB/inst/doc/Advanced.R |only MicroMoB-0.0.11/MicroMoB/inst/doc/Advanced.Rmd |only MicroMoB-0.0.11/MicroMoB/inst/doc/Advanced.html |only MicroMoB-0.0.11/MicroMoB/inst/doc/BH_aqua.html | 2 MicroMoB-0.0.11/MicroMoB/inst/doc/BQ_mosquito.R |only MicroMoB-0.0.11/MicroMoB/inst/doc/BQ_mosquito.Rmd |only MicroMoB-0.0.11/MicroMoB/inst/doc/BQ_mosquito.html |only MicroMoB-0.0.11/MicroMoB/inst/doc/MOI_human.html | 6 MicroMoB-0.0.11/MicroMoB/inst/doc/MicroMoB.Rmd | 27 - MicroMoB-0.0.11/MicroMoB/inst/doc/MicroMoB.html | 11 MicroMoB-0.0.11/MicroMoB/inst/doc/RM_mosquito.html | 2 MicroMoB-0.0.11/MicroMoB/inst/doc/RM_transmission.html | 2 MicroMoB-0.0.11/MicroMoB/inst/extdata |only MicroMoB-0.0.11/MicroMoB/inst/plumber |only MicroMoB-0.0.11/MicroMoB/man/compute_Z.BQ.Rd |only MicroMoB-0.0.11/MicroMoB/man/compute_Z.Rd | 2 MicroMoB-0.0.11/MicroMoB/man/compute_emergents.BH.Rd | 2 MicroMoB-0.0.11/MicroMoB/man/compute_emergents.trace_deterministic.Rd | 2 MicroMoB-0.0.11/MicroMoB/man/compute_emergents.trace_stochastic.Rd | 2 MicroMoB-0.0.11/MicroMoB/man/compute_f.BQ.Rd |only MicroMoB-0.0.11/MicroMoB/man/compute_oviposit.BQ.Rd |only MicroMoB-0.0.11/MicroMoB/man/compute_oviposit.BQ_deterministic.Rd |only MicroMoB-0.0.11/MicroMoB/man/compute_oviposit.BQ_stochastic.Rd |only MicroMoB-0.0.11/MicroMoB/man/compute_q.BQ.Rd |only MicroMoB-0.0.11/MicroMoB/man/distribute.Rd | 2 MicroMoB-0.0.11/MicroMoB/man/get_config_alternative_trace.Rd |only MicroMoB-0.0.11/MicroMoB/man/get_config_aqua_BH.Rd |only MicroMoB-0.0.11/MicroMoB/man/get_config_aqua_trace.Rd |only MicroMoB-0.0.11/MicroMoB/man/get_config_humans_MOI.Rd |only MicroMoB-0.0.11/MicroMoB/man/get_config_humans_SIR.Rd |only MicroMoB-0.0.11/MicroMoB/man/get_config_humans_SIS.Rd |only MicroMoB-0.0.11/MicroMoB/man/get_config_mosquito_RM.Rd |only MicroMoB-0.0.11/MicroMoB/man/get_config_mosquito_trace.Rd |only MicroMoB-0.0.11/MicroMoB/man/get_config_visitor_trace.Rd |only MicroMoB-0.0.11/MicroMoB/man/make_MicroMoB.Rd | 4 MicroMoB-0.0.11/MicroMoB/man/output_aqua.BH.Rd |only MicroMoB-0.0.11/MicroMoB/man/output_aqua.Rd |only MicroMoB-0.0.11/MicroMoB/man/output_aqua.trace.Rd |only MicroMoB-0.0.11/MicroMoB/man/output_mosquitoes.RM.Rd |only MicroMoB-0.0.11/MicroMoB/man/output_mosquitoes.Rd |only MicroMoB-0.0.11/MicroMoB/man/output_mosquitoes.trace.Rd |only MicroMoB-0.0.11/MicroMoB/man/setup_aqua_BH.Rd | 4 MicroMoB-0.0.11/MicroMoB/man/setup_humans_MOI.Rd | 6 MicroMoB-0.0.11/MicroMoB/man/setup_mosquito_BQ.Rd |only MicroMoB-0.0.11/MicroMoB/man/setup_mosquito_RM.Rd | 4 MicroMoB-0.0.11/MicroMoB/man/step_aqua.trace.Rd | 2 MicroMoB-0.0.11/MicroMoB/man/step_mosquitoes.BQ.Rd |only MicroMoB-0.0.11/MicroMoB/man/step_mosquitoes.BQ_deterministic.Rd |only MicroMoB-0.0.11/MicroMoB/man/step_mosquitoes.BQ_stochastic.Rd |only MicroMoB-0.0.11/MicroMoB/tests/testthat/test-ModelObject.R | 1 MicroMoB-0.0.11/MicroMoB/tests/testthat/test-api_mosquitoes_plumber.R |only MicroMoB-0.0.11/MicroMoB/tests/testthat/test-aquatic_BH.R | 69 ++++ MicroMoB-0.0.11/MicroMoB/tests/testthat/test-aquatic_trace.R | 89 ++++++ MicroMoB-0.0.11/MicroMoB/tests/testthat/test-humans_MOI.R | 90 ++++++ MicroMoB-0.0.11/MicroMoB/tests/testthat/test-humans_SIR.R | 83 +++++ MicroMoB-0.0.11/MicroMoB/tests/testthat/test-humans_SIS.R | 82 +++++ MicroMoB-0.0.11/MicroMoB/tests/testthat/test-mosquito_BQ.R |only MicroMoB-0.0.11/MicroMoB/tests/testthat/test-mosquito_RM.R | 105 +++++++ MicroMoB-0.0.11/MicroMoB/tests/testthat/test-mosquito_trace.R | 45 +++ MicroMoB-0.0.11/MicroMoB/tests/testthat/test-other_trace.R |only MicroMoB-0.0.11/MicroMoB/tests/testthat/test-visitor_trace.R | 44 +++ MicroMoB-0.0.11/MicroMoB/vignettes/Advanced.Rmd |only MicroMoB-0.0.11/MicroMoB/vignettes/BQ_mosquito.Rmd |only MicroMoB-0.0.11/MicroMoB/vignettes/MicroMoB.Rmd | 27 - MicroMoB-0.0.9/MicroMoB/tests/testthat/test-althost_trace.R |only 88 files changed, 1341 insertions(+), 180 deletions(-)
Title: Data Only: The Correlates of State Policy Project Dataset
Description: Contains the Correlates of State Policy Project dataset (+ codebook) assembled by Marty P. Jordan and Matt Grossmann (2020) <http://ippsr.msu.edu/public-policy/correlates-state-policy> used by the 'cspp' package. The Correlates data contains over 3000 variables across more than 100 years that pertain to state politics and policy in the United States.
Author: Caleb Lucas and Joshua McCrain
Maintainer: Caleb Lucas <calebjlucas@gmail.com>
Diff between csppData versions 0.2.5 dated 2022-03-08 and 0.2.51 dated 2022-03-08
DESCRIPTION | 6 +++--- MD5 | 6 +++--- data/codebook.rda |binary data/correlates.rda |binary 4 files changed, 6 insertions(+), 6 deletions(-)
Title: Casablanca Stock Exchange Data
Description: It provides real-time data from the Casablanca Stock Exchange. The objective is to facilitate access to data for all users of the R programming language.
It includes a variety of data accessible just by function call.
Author: Abdoul Oudouss Diakité [aut, cre]
Maintainer: Abdoul Oudouss Diakité <abdouloudoussdiakite@gmail.com>
Diff between casabourse versions 1.1.0 dated 2022-02-18 and 1.2.0 dated 2022-03-08
DESCRIPTION | 8 MD5 | 14 NEWS.md | 9 R/daily.data.R | 9 R/get_info.R | 8 R/masi.data.R | 1 inst/doc/Introduction_to_casabourse.html | 2579 +++++++++++++++---------------- man/get_info.Rd | 3 8 files changed, 1306 insertions(+), 1325 deletions(-)
Title: Improved Allele-Specific Copy Number of SNP Microarrays for
Downstream Segmentation
Description: The CalMaTe method calibrates preprocessed allele-specific copy number estimates (ASCNs) from DNA microarrays by controlling for single-nucleotide polymorphism-specific allelic crosstalk. The resulting ASCNs are on average more accurate, which increases the power of segmentation methods for detecting changes between copy number states in tumor studies including copy neutral loss of heterozygosity. CalMaTe applies to any ASCNs regardless of preprocessing method and microarray technology, e.g. Affymetrix and Illumina.
Author: Maria Ortiz [aut, ctb],
Ander Aramburu [ctb],
Henrik Bengtsson [aut, cre, cph],
Pierre Neuvial [aut, ctb],
Angel Rubio [aut, ctb]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between calmate versions 0.12.1 dated 2015-10-27 and 0.13.0 dated 2022-03-08
.aspell |only DESCRIPTION | 15 MD5 | 64 NAMESPACE | 3 NEWS | 764 ++++++---- R/000.R | 14 R/CalMaTeCalibration.R | 124 - R/calmateByThetaAB.R | 573 +++---- R/calmateByTotalAndFracB.R | 436 ++--- R/fitCalMaTe.R | 148 - R/fitCalMaTeCNprobes.R | 106 - R/fitCalMaTeInternal.R | 172 +- R/fitCalMaTeMedians.R | 264 +-- R/fitCalMaTeV1.R | 198 +- R/fitCalMaTeV2.R | 340 ++-- R/thetaAB2TotalAndFracB.R | 244 +-- R/truncateFracB.R | 94 - R/truncateThetaAB.R | 186 +- R/utils.R |only README.md |only inst/CITATION |only inst/WORDLIST |only inst/testScripts/publications/CalMaTe/Z01.plots,byChromosome.R | 8 inst/testScripts/publications/CalMaTe/Z02.plots,segments.R | 12 inst/testScripts/publications/CalMaTe/Z03.plots,byUnits.R | 4 inst/testScripts/widgets/CalMaTe/Z02.plots,segments.R | 18 man/CalMaTeCalibration.Rd | 138 - man/calmate-package.Rd | 2 man/calmateByThetaAB.array.Rd | 110 - man/calmateByTotalAndFracB.array.Rd | 82 - man/fitCalMaTeInternal.Rd | 2 tests/calmateByThetaAB.R | 190 +- tests/calmateByTotalAndFracB.R | 60 tests/fitCalMaTe.R |only tests/fitCalMaTeMedians.R |only tests/testScriptCalMaTe1.R | 108 - tests/thetaAB2TotalAndFracB.R | 22 37 files changed, 2447 insertions(+), 2054 deletions(-)
Title: Functions for Tidy Analysis and Generation of Random Data
Description: To make it easy to generate random numbers based upon the underlying stats
distribution functions. All data is returned in a tidy and structured
format making working with the data simple and straight forward. Given that the
data is returned in a tidy 'tibble' it lends itself to working with the rest of the
'tidyverse'.
Author: Steven Sanderson [aut, cre],
Steven Sanderson [cph]
Maintainer: Steven Sanderson <spsanderson@gmail.com>
Diff between TidyDensity versions 0.0.1 dated 2022-01-21 and 1.0.0 dated 2022-03-08
DESCRIPTION | 12 MD5 | 178 ++++++-- NAMESPACE | 41 + NEWS.md | 74 +++ R/00_global_variables.R | 8 R/autoplot-combined-dist.R |only R/autoplot-density.R | 414 ++++++++++++-------- R/autoplot-multi-dist.R |only R/autoplot-randomwalk.R |only R/combine-multi-single-dist-tbl.R |only R/combine-tidy-distributions-tbl.R |only R/empirical-tidy.R | 104 +++-- R/est-param-beta.R |only R/est-param-binomial.R |only R/est-param-exponential.R |only R/est-param-gamma.R |only R/est-param-geometric.R |only R/est-param-hypergeometric.R |only R/est-param-logistic.R |only R/est-param-negative-binomial.R |only R/est-param-normal.R |only R/est-param-pareto.R |only R/est-param-poisson.R |only R/est_param-lognormal.R |only R/random-tidy-beta.R | 130 +++--- R/random-tidy-binomial.R |only R/random-tidy-burr-inverse.R |only R/random-tidy-burr.R |only R/random-tidy-cauchy.R | 136 +++--- R/random-tidy-chisquare.R | 136 +++--- R/random-tidy-exponential-inverse.R |only R/random-tidy-exponential.R | 124 +++-- R/random-tidy-f.R | 128 +++--- R/random-tidy-gamma-inverse.R |only R/random-tidy-gamma.R | 134 +++--- R/random-tidy-general-beta.R |only R/random-tidy-general-pareto.R |only R/random-tidy-geom.R |only R/random-tidy-hypergeometric.R | 130 +++--- R/random-tidy-logistic.R | 128 +++--- R/random-tidy-lognormal.R | 136 +++--- R/random-tidy-negative-binomial.R |only R/random-tidy-normal-inverse.R |only R/random-tidy-normal.R | 134 +++--- R/random-tidy-paralogistic.R |only R/random-tidy-pareto-inverse.R |only R/random-tidy-pareto-single-param.R |only R/random-tidy-pareto.R |only R/random-tidy-poisson.R | 120 +++-- R/random-tidy-uniform.R | 124 +++-- R/random-tidy-weibull-inverse.R |only R/random-tidy-weibull.R | 140 +++--- R/random-tidy-zero-truc-poisson.R |only R/random-tidy-zero-trunc-geometric.R |only R/random-tidy-zero-truncated-binomial.R |only R/random-zero-trunc-negative-binomial.R |only R/tidy-random-walk.R |only R/tidy_distribution_summary_tbl.R | 65 +-- R/vec-kurtosis.R |only R/vec-range.R |only R/vec-scale-zero-one.R |only R/vec-skewness.R |only R/zzz.R | 54 -- README.md | 39 + build/vignette.rds |binary inst/doc/getting-started.html | 243 ++++++++++- man/figures/README-more_than_nine_simulations-1.png |binary man/figures/README-more_than_nine_simulations-2.png |binary man/figures/README-more_than_nine_simulations-3.png |binary man/figures/README-more_than_nine_simulations-4.png |binary man/figures/README-plot_density-1.png |binary man/figures/README-plot_density-2.png |binary man/figures/README-plot_density-3.png |binary man/figures/README-plot_density-4.png |binary man/tidy_autoplot.Rd | 40 + man/tidy_beta.Rd | 30 + man/tidy_binomial.Rd |only man/tidy_burr.Rd |only man/tidy_cauchy.Rd | 26 - man/tidy_chisquare.Rd | 26 - man/tidy_combine_distributions.Rd |only man/tidy_combined_autoplot.Rd |only man/tidy_distribution_summary_tbl.Rd | 15 man/tidy_empirical.Rd | 1 man/tidy_exponential.Rd | 30 + man/tidy_f.Rd | 24 - man/tidy_gamma.Rd | 30 + man/tidy_generalized_beta.Rd |only man/tidy_generalized_pareto.Rd |only man/tidy_geometric.Rd |only man/tidy_hypergeometric.Rd | 27 - man/tidy_inverse_burr.Rd |only man/tidy_inverse_exponential.Rd |only man/tidy_inverse_gamma.Rd |only man/tidy_inverse_normal.Rd |only man/tidy_inverse_pareto.Rd |only man/tidy_inverse_weibull.Rd |only man/tidy_kurtosis_vec.Rd |only man/tidy_logistic.Rd | 30 + man/tidy_lognormal.Rd | 29 + man/tidy_multi_dist_autoplot.Rd |only man/tidy_multi_single_dist.Rd |only man/tidy_negative_binomial.Rd |only man/tidy_normal.Rd | 30 + man/tidy_paralogistic.Rd |only man/tidy_pareto.Rd |only man/tidy_pareto1.Rd |only man/tidy_poisson.Rd | 28 - man/tidy_random_walk.Rd |only man/tidy_random_walk_autoplot.Rd |only man/tidy_range_statistic.Rd |only man/tidy_scale_zero_one_vec.Rd |only man/tidy_skewness_vec.Rd |only man/tidy_uniform.Rd | 26 - man/tidy_weibull.Rd | 33 + man/tidy_zero_truncated_binomial.Rd |only man/tidy_zero_truncated_geometric.Rd |only man/tidy_zero_truncated_negative_binomial.Rd |only man/tidy_zero_truncated_poisson.Rd |only man/util_beta_param_estimate.Rd |only man/util_binomial_param_estimate.Rd |only man/util_exponential_param_estimate.Rd |only man/util_gamma_param_estimate.Rd |only man/util_geometric_param_estimate.Rd |only man/util_hypergeometric_param_estimate.Rd |only man/util_logistic_param_estimate.Rd |only man/util_lognormal_param_estimate.Rd |only man/util_negative_binomial_param_estimate.Rd |only man/util_normal_param_estimate.Rd |only man/util_pareto_param_estimate.Rd |only man/util_poisson_param_estimate.Rd |only 131 files changed, 2138 insertions(+), 1219 deletions(-)
Title: 'Rcpp' Bindings for 'Redis' using the 'hiredis' Library
Description: Connection to the 'Redis' key/value store using the
C-language client library 'hiredis' (included as a fallback) with
'MsgPack' encoding provided via 'RcppMsgPack' headers. It now also
includes the pub/sub functions from the 'rredis' package.
Author: Dirk Eddelbuettel and Bryan W. Lewis
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppRedis versions 0.1.11 dated 2021-06-26 and 0.2.0 dated 2022-03-08
RcppRedis-0.1.11/RcppRedis/src/hiredis/Makefile |only RcppRedis-0.2.0/RcppRedis/ChangeLog | 157 +++++ RcppRedis-0.2.0/RcppRedis/DESCRIPTION | 19 RcppRedis-0.2.0/RcppRedis/MD5 | 77 +- RcppRedis-0.2.0/RcppRedis/R/pubsub.R |only RcppRedis-0.2.0/RcppRedis/README.md | 7 RcppRedis-0.2.0/RcppRedis/build |only RcppRedis-0.2.0/RcppRedis/cleanup | 14 RcppRedis-0.2.0/RcppRedis/configure | 40 - RcppRedis-0.2.0/RcppRedis/configure.ac | 17 RcppRedis-0.2.0/RcppRedis/inst/NEWS.Rd | 26 RcppRedis-0.2.0/RcppRedis/inst/doc |only RcppRedis-0.2.0/RcppRedis/inst/examples/readPython.py | 8 RcppRedis-0.2.0/RcppRedis/inst/examples/writePython.py | 13 RcppRedis-0.2.0/RcppRedis/inst/pubsub |only RcppRedis-0.2.0/RcppRedis/inst/tinytest/test_basics.R | 2 RcppRedis-0.2.0/RcppRedis/man/redisMonitorChannels.Rd |only RcppRedis-0.2.0/RcppRedis/src/Makevars.in | 3 RcppRedis-0.2.0/RcppRedis/src/Makevars.ucrt | 8 RcppRedis-0.2.0/RcppRedis/src/Redis.cpp | 100 +++ RcppRedis-0.2.0/RcppRedis/src/hiredis/GNUmakefile |only RcppRedis-0.2.0/RcppRedis/src/hiredis/alloc.c |only RcppRedis-0.2.0/RcppRedis/src/hiredis/alloc.h |only RcppRedis-0.2.0/RcppRedis/src/hiredis/async.c | 341 ++++++++--- RcppRedis-0.2.0/RcppRedis/src/hiredis/async.h | 13 RcppRedis-0.2.0/RcppRedis/src/hiredis/async_private.h |only RcppRedis-0.2.0/RcppRedis/src/hiredis/dict.c | 36 - RcppRedis-0.2.0/RcppRedis/src/hiredis/hiredis.c | 490 +++++++++++------ RcppRedis-0.2.0/RcppRedis/src/hiredis/hiredis.h | 154 ++++- RcppRedis-0.2.0/RcppRedis/src/hiredis/net.c | 219 +++++-- RcppRedis-0.2.0/RcppRedis/src/hiredis/net.h | 6 RcppRedis-0.2.0/RcppRedis/src/hiredis/read.c | 231 ++++++-- RcppRedis-0.2.0/RcppRedis/src/hiredis/read.h | 26 RcppRedis-0.2.0/RcppRedis/src/hiredis/sds.c | 34 - RcppRedis-0.2.0/RcppRedis/src/hiredis/sds.h | 35 - RcppRedis-0.2.0/RcppRedis/src/hiredis/sdsalloc.h | 8 RcppRedis-0.2.0/RcppRedis/src/hiredis/sockcompat.c |only RcppRedis-0.2.0/RcppRedis/src/hiredis/sockcompat.h |only RcppRedis-0.2.0/RcppRedis/src/hiredis/win32.h |only RcppRedis-0.2.0/RcppRedis/tests/pubsub.R |only RcppRedis-0.2.0/RcppRedis/vignettes |only 41 files changed, 1571 insertions(+), 513 deletions(-)
Title: Predictive Evaluation Metrics in Survival Analysis
Description: An implementation of popular evaluation metrics that are commonly used in survival prediction
including Concordance Index, Brier Score, Integrated Brier Score,
Integrated Square Error, Integrated Absolute Error and Mean Absolute Error.
For a detailed information, see (Ishwaran H, Kogalur UB, Blackstone EH and Lauer MS (2008) <doi:10.1214/08-AOAS169>) and
(Moradian H, Larocque D and Bellavance F (2017) <doi:10.1007/s10985-016-9372-1>) for different evaluation metrics.
Author: Hanpu Zhou [aut, cre],
Xuewei Cheng [aut],
Sizheng Wang [aut],
Yi Zou [aut],
Hong Wang [aut]
Maintainer: Hanpu Zhou <zhouhanpu@csu.edu.cn>
Diff between SurvMetrics versions 0.4.0 dated 2022-01-07 and 0.4.5 dated 2022-03-08
DESCRIPTION | 12 ++++++------ MD5 | 12 ++++++------ NEWS.md | 4 ++-- R/IAEISE.R | 12 +++++------- R/IBS.R | 14 ++++++-------- man/IAEISE.Rd | 12 +++++------- man/IBS.Rd | 14 ++++++-------- 7 files changed, 36 insertions(+), 44 deletions(-)
Title: Prediction Error Curves for Risk Prediction Models in Survival
Analysis
Description: Validation of risk predictions obtained from survival models and
competing risk models based on censored data using inverse weighting and
cross-validation. Most of the 'pec' functionality has been moved to 'riskRegression'.
Author: Thomas A. Gerds
Maintainer: Thomas A. Gerds <tag@biostat.ku.dk>
Diff between pec versions 2021.10.11 dated 2021-10-11 and 2022.03.06 dated 2022-03-08
DESCRIPTION | 12 +-- MD5 | 40 +++++------ R/bootstrapCrossValidation.R | 2 R/calPlot.R | 12 +-- R/cindex.R | 18 ++--- R/pec.R | 2 R/plotPredictSurvProb.R | 5 - R/predictEventProb.selectFGR.R | 2 R/predictRestrictedMeanTime.R | 5 - R/predictSurvProb.R | 5 - R/print.pec.R | 16 ++-- R/summary.Cindex.R | 2 man/cindex.Rd | 16 ++-- man/plotPredictSurvProb.Rd | 5 - man/predictRestrictedMeanTime.Rd | 4 - man/predictSurvProb.Rd | 5 - man/selectFGR.Rd | 1 src/auc.c | 4 - src/ccr.c | 3 src/cindex.c | 4 - src/pec.c | 135 +++++++++++++++++++-------------------- 21 files changed, 130 insertions(+), 168 deletions(-)
Title: Nonlinear Nonparametric Statistics
Description: Nonlinear nonparametric statistics using partial moments. Partial moments are the elements of variance and asymptotically approximate the area of f(x). These robust statistics provide the basis for nonlinear analysis while retaining linear equivalences. NNS offers: Numerical integration, Numerical differentiation, Clustering, Correlation, Dependence, Causal analysis, ANOVA, Regression, Classification, Seasonality, Autoregressive modeling, Normalization and Stochastic dominance. All routines based on: Viole, F. and Nawrocki, D. (2013), Nonlinear Nonparametric Statistics: Using Partial Moments (ISBN: 1490523995).
Author: Fred Viole
Maintainer: Fred Viole <ovvo.financial.systems@gmail.com>
Diff between NNS versions 0.8.4.1 dated 2022-01-13 and 0.8.5 dated 2022-03-08
DESCRIPTION | 8 MD5 | 76 +-- R/ANOVA.R | 6 R/ARMA.R | 4 R/ARMA_optim.R | 53 +- R/Boost.R | 6 R/Causation.R | 6 R/Copula.R | 53 +- R/Dependence.R | 2 R/Dependence_matrix.R | 2 R/FSD.R | 4 R/LPM_UPM_VaR.R | 4 R/NNS_VAR.R | 2 R/NNS_meboot.R | 29 - R/NNS_term_matrix.R | 2 R/Normalization.R | 52 +- R/Partial_Moments.R | 32 - R/Partition_Map.R | 4 R/Regression.R | 4 R/SD_Efficient_Set.R | 3 R/SSD.R | 4 R/Seasonality_Test.R | 2 R/Stack.R | 6 R/TSD.R | 4 R/Uni_SD_Routines.R | 12 R/dy_d_wrt.R | 4 R/dy_dx.R | 4 README.md | 6 inst/doc/NNSvignette_Classification.html | 300 ++++++++++++++- inst/doc/NNSvignette_Clustering_and_Regression.html | 305 ++++++++++++++- inst/doc/NNSvignette_Correlation_and_Dependence.html | 285 +++++++++++++- inst/doc/NNSvignette_Forecasting.R | 3 inst/doc/NNSvignette_Forecasting.Rmd | 3 inst/doc/NNSvignette_Forecasting.html | 373 +++++++++++++++++-- inst/doc/NNSvignette_Partial_Moments.html | 243 +++++++++++- man/NNS.ARMA.optim.Rd | 13 man/NNS.copula.Rd | 4 man/NNS.norm.Rd | 4 vignettes/NNSvignette_Forecasting.Rmd | 3 39 files changed, 1605 insertions(+), 325 deletions(-)
Title: Creates Log Files
Description: Contains functions to help create log files. The
package aims to overcome the difficulty of the base R sink() command. The
log_print() function will print to both the console and the file log,
without interfering in other write operations.
Author: David Bosak [aut, cre]
Maintainer: David Bosak <dbosak01@gmail.com>
Diff between logr versions 1.2.8 dated 2022-01-13 and 1.2.9 dated 2022-03-08
DESCRIPTION | 6 +- MD5 | 11 ++--- NEWS.md | 4 + R/logr.R | 14 +++++- tests/testthat/log/test.log | 95 +++++--------------------------------------- tests/testthat/log/test.msg |only tests/testthat/test-logr.R | 5 -- 7 files changed, 38 insertions(+), 97 deletions(-)
Title: Distributions for Generalized Additive Models for Location Scale
and Shape
Description: A set of distributions which can be used for modelling the response variables in Generalized Additive Models for Location Scale and Shape, Rigby and Stasinopoulos (2005), <doi:10.1111/j.1467-9876.2005.00510.x>. The distributions can be continuous, discrete or mixed distributions. Extra distributions can be created, by transforming, any continuous distribution defined on the real line, to a distribution defined on ranges 0 to infinity or 0 to 1, by using a ''log'' or a ''logit' transformation respectively.
Author: Mikis Stasinopoulos [aut, cre, cph],
Robert Rigby [aut],
Calliope Akantziliotou [ctb],
Vlasios Voudouris [ctb],
Gillian Heller [ctb],
Fernanda De Bastiani [ctb],
Raydonal Ospina [ctb],
Nicoletta Motpan [ctb],
Fiona McElduff [ctb],
Majid Djennad [ctb] [...truncated...]
Maintainer: Mikis Stasinopoulos <d.stasinopoulos@londonmet.ac.uk>
Diff between gamlss.dist versions 6.0-1 dated 2021-11-13 and 6.0-3 dated 2022-03-08
gamlss.dist-6.0-1/gamlss.dist/inst/doc/Distributions-2010.pdf |only gamlss.dist-6.0-3/gamlss.dist/DESCRIPTION | 10 ++++----- gamlss.dist-6.0-3/gamlss.dist/MD5 | 11 ++++------ gamlss.dist-6.0-3/gamlss.dist/NAMESPACE | 1 gamlss.dist-6.0-3/gamlss.dist/R/Functions_for_SK_in_gamlss.R | 4 +-- gamlss.dist-6.0-3/gamlss.dist/R/GT.R | 7 +++--- gamlss.dist-6.0-3/gamlss.dist/build/partial.rdb |binary 7 files changed, 17 insertions(+), 16 deletions(-)
Title: Data Only: The Correlates of State Policy Project Dataset
Description: Contains the Correlates of State Policy Project dataset (+ codebook) assembled by Marty P. Jordan and Matt Grossmann (2020) <http://ippsr.msu.edu/public-policy/correlates-state-policy> used by the 'cspp' package. The Correlates data contains over 3000 variables across more than 100 years that pertain to state politics and policy in the United States.
Author: Caleb Lucas and Joshua McCrain
Maintainer: Caleb Lucas <calebjlucas@gmail.com>
Diff between csppData versions 0.1.4 dated 2021-10-16 and 0.2.5 dated 2022-03-08
DESCRIPTION | 8 ++++---- MD5 | 18 +++++++++--------- R/codebook.R | 2 +- R/correlates.R | 3 +-- R/zzz.R | 2 +- README.md | 19 +++++++++++-------- data/codebook.rda |binary data/correlates.rda |binary man/codebook.Rd | 4 ++-- man/correlates.Rd | 5 ++--- 10 files changed, 31 insertions(+), 30 deletions(-)
Title: Presentation Ninja
Description: Create HTML5 slides with R Markdown and the JavaScript library
'remark.js' (<https://remarkjs.com>).
Author: Yihui Xie [aut, cre] ,
Alessandro Gasparini [ctb] ,
Benjie Gillam [ctb],
Claus Thorn Ekstrøm [ctb],
Daniel Anderson [ctb],
Dawei Lang [ctb],
Deo Salil [ctb],
Emi Tanaka [ctb],
Garrick Aden-Buie [ctb] ,
Iñaki Ucar [ctb] ,
John Little [ctb],
Joselyn Ch [...truncated...]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between xaringan versions 0.22 dated 2021-06-23 and 0.23 dated 2022-03-08
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ R/render.R | 8 +++++--- README.md | 2 +- build/vignette.rds |binary inst/rmarkdown/templates/xaringan/resources/useR.css | 9 ++++++--- man/decktape.Rd | 8 +++----- 7 files changed, 25 insertions(+), 22 deletions(-)
Title: Create and (Interactively) Modify Nested Hierarchies
Description: Provides functionality to generate, (interactively) modify (by adding, removing and renaming nodes) and convert nested hierarchies between different formats.
These tree like structures can be used to define for example complex hierarchical tables used for statistical disclosure control.
Author: Bernhard Meindl [aut, cre]
Maintainer: Bernhard Meindl <Bernhard.Meindl@statistik.gv.at>
Diff between sdcHierarchies versions 0.19.1 dated 2021-08-05 and 0.19.2 dated 2022-03-08
DESCRIPTION | 10 +++++----- MD5 | 12 ++++++------ NEWS.md | 3 +++ README.md | 2 +- build/vignette.rds |binary inst/doc/usage.html | 5 +++-- tests/testthat/test_additional.R | 6 +++--- 7 files changed, 21 insertions(+), 17 deletions(-)
More information about sdcHierarchies at CRAN
Permanent link
Title: The Full Bayesian Evidence Test, Full Bayesian Significance Test
and the e-Value
Description: Provides access to a range of functions for computing and visualizing the Full Bayesian Significance Test (FBST) and the e-value for testing a sharp hypothesis against its alternative, and the Full Bayesian Evidence Test (FBET) and the (generalized) Bayesian evidence value for testing a composite (or interval) hypothesis against its alternative. The methods are widely applicable as long as a posterior MCMC sample is available. For details on the computation and theory of the FBST see <arXiv:2005.13181>.
Author: Riko Kelter
Maintainer: Riko Kelter <riko.kelter@uni-siegen.de>
Diff between fbst versions 1.6 dated 2022-01-06 and 1.7 dated 2022-03-08
DESCRIPTION | 8 +-- MD5 | 22 ++++---- R/fbst.R | 140 +++++++++++++++++++++++++++++++---------------------- build/partial.rdb |binary inst/doc/fbet.R | 19 ++++--- inst/doc/fbet.Rmd | 33 ++++++------ inst/doc/fbet.html | 63 ++++++++++++----------- inst/doc/fbst.R | 15 +++-- inst/doc/fbst.Rmd | 23 ++++---- inst/doc/fbst.html | 55 ++++++++++---------- vignettes/fbet.Rmd | 33 ++++++------ vignettes/fbst.Rmd | 23 ++++---- 12 files changed, 243 insertions(+), 191 deletions(-)
Title: Synthetic Control Method to Forecast Series
Description: Not a new method implementation.
Usage of the Synthetic Control Method, see Abadie et al. (2011) <doi:10.18637/jss.v042.i13>,
as an ad-hoc approach to forecast series with panel in a specific context. The context being: There are units in different stages of a certain journey, there the assumption that the units’ behavior throw out the journey are similar is valid and there are not enough data to use traditional forecasting methods.
For a usage example see the package home page documentation.
Author: Vinicius Sousa [aut, cph, cre]
Maintainer: Vinicius Sousa <vinisousa04@gmail.com>
Diff between SynthCast versions 0.2.0 dated 2021-06-14 and 0.2.1 dated 2022-03-08
DESCRIPTION | 9 ++-- MD5 | 23 ++++++---- NAMESPACE | 5 ++ R/compute_result_tables.R | 3 - R/compute_synthetic_control.R | 3 - R/intern_elegile_units.R | 3 - R/intern_get_max_time_unit_of_interest.R | 3 - R/prepare_dataset.R | 8 ++- R/run_synthetic_forecast.R | 2 build |only inst |only tests/testthat/test-syth-cast.R | 66 +++++++++++++++++++++++++++++++ vignettes |only 13 files changed, 104 insertions(+), 21 deletions(-)
Title: Reference Based Multiple Imputation
Description: Implements reference based multiple imputation allowing for the imputation of longitudinal datasets using predefined strategies.
Author: Craig Gower-Page [aut, cre],
Alessandro Noci [aut],
Marcel Wolbers [ctb],
Roche [cph, fnd]
Maintainer: Craig Gower-Page <craig.gower-page@roche.com>
Diff between rbmi versions 1.1.0 dated 2022-03-02 and 1.1.1 dated 2022-03-08
DESCRIPTION | 6 +++--- MD5 | 6 +++--- inst/doc/advanced.html | 2 +- tests/testthat/test-pool.R | 16 +++++++--------- 4 files changed, 14 insertions(+), 16 deletions(-)
Title: An Open-Source Loader for Bruker's timsTOF Data Files
Description: A free, open-source package designed for
handling .tdf data files produced by Bruker's 'timsTOF' mass
spectrometers.
Fast, free, crossplatform, with no reading through
EULAs or messing with binary .dll files involved.
Author: Michał Piotr Startek [aut, cre, cph]
,
Mateusz Krzysztof Łącki [aut, cph]
Maintainer: Michał Piotr Startek <michal.startek@mimuw.edu.pl>
Diff between opentimsr versions 1.0.11 dated 2021-12-18 and 1.0.12 dated 2022-03-08
DESCRIPTION | 10 +++++----- MD5 | 23 ++++++++++++----------- NAMESPACE | 1 + R/RcppExports.R | 4 ++++ R/opentimsr.R | 15 +++++++++++++++ man/opentims_set_threads.Rd |only src/RcppExports.cpp | 11 +++++++++++ src/Rinterface.cpp | 9 ++++++++- src/opentims.cpp | 7 +++---- src/scan2inv_ion_mobility_converter.cpp | 17 +++++++++++++++++ src/scan2inv_ion_mobility_converter.h | 9 +++++++++ src/tof2mz_converter.cpp | 14 ++++++++++++++ src/tof2mz_converter.h | 4 ++++ 13 files changed, 103 insertions(+), 21 deletions(-)
Title: Set of Assumptions for Factor and Principal Component Analysis
Description: Tests for Kaiser-Meyer-Olkin (KMO) and
communalities in a dataset. It provides a final sample by removing
variables in a iterable manner while keeping account of the variables
that were removed in each step. It follows the best practices and assumptions according to
Hair, Black, Babin & Anderson (2018, ISBN:9781473756540).
Author: Jose Storopoli [aut, cre]
Maintainer: Jose Storopoli <jstoropoli@protonmail.com>
Diff between FactorAssumptions versions 1.1.2 dated 2020-03-06 and 2.0.1 dated 2022-03-08
DESCRIPTION | 11 +-- MD5 | 10 +-- NEWS.md | 6 + README.md | 4 - build/vignette.rds |binary inst/doc/vignette.html | 152 ++++++++++++++++++++++++++++++++++++++----------- 6 files changed, 135 insertions(+), 48 deletions(-)
More information about FactorAssumptions at CRAN
Permanent link
Title: Non-Interactive Spatial Tools for Raster Processing and
Visualization
Description: S3 classes and methods for manipulation with georeferenced raster data: reading/writing, processing, multi-panel visualization. SWU.
Author: Nikita Platonov [aut, cre]
Maintainer: Nikita Platonov <platonov@sevin.ru>
Diff between ursa versions 3.9.5 dated 2022-01-25 and 3.9.6 dated 2022-03-08
DESCRIPTION | 12 +- MD5 | 76 +++++++-------- NAMESPACE | 2 NEWS.md | 44 ++++++-- R/classRaster.R | 2 R/classRaster_GroupGeneric.R | 2 R/classRaster_close.R | 6 - R/colorize.R | 8 + R/compose_close.R | 14 ++ R/compose_open.R | 37 ++++++- R/conn.open_envi.R | 5 R/conn.read_gdal.R | 41 +++++--- R/conn.write_gdal.R | 22 +++- R/legend_colorbar.R | 13 +- R/package_raster.R | 3 R/panel_coastline.R | 131 ++++++++++++++++---------- R/panel_raster.R | 8 + R/spatial_read.R | 2 R/spatial_write.R | 4 R/ursa_000.R | 2 R/ursa_as.R | 216 +++++++++++++++++++++++++++++++++++-------- R/xxx.browse.R | 18 ++- R/xxx.gdalwarp.R | 8 + R/xxx.spatialize.R | 24 +++- R/yyy.connection.R | 2 R/yyy.crop.R | 75 ++++++++++++-- R/yyy.project.R | 22 ++-- R/yyy.tile.R | 2 R/yyy.util.R | 6 - R/zzz.R | 2 inst/requisite/coast-l.rds |binary man/compose_open.Rd | 4 man/conn.open_gdal.Rd | 2 man/conn.read_gdal.Rd | 2 man/package_raster.Rd | 1 man/polygonize.Rd | 2 man/reclass.Rd | 2 man/spatial_read.Rd | 7 - src/ursa.c | 6 - 39 files changed, 605 insertions(+), 230 deletions(-)
Title: Transformation Models with Mixed Effects
Description: Likelihood-based estimation of mixed-effects transformation models using the Template
Model Builder (TMB, Kristensen et al., 2016, <doi:10.18637/jss.v070.i05>). The technical details
of transformation models are given in Hothorn et al. (2018, <doi:10.1111/sjos.12291>). Likelihood
contributions of exact, randomly censored (left, right, interval) and truncated observations are
supported. The random effects are assumed to be normally distributed on the scale of the
transformation function, the marginal likelihood is evaluated using the Laplace approximation,
and the gradients are calculated with automatic differentiation (AD).
Author: Balint Tamasi [aut, cre] ,
Torsten Hothorn [ctb]
Maintainer: Balint Tamasi <balint.tamasi@uzh.ch>
Diff between tramME versions 0.1.2 dated 2021-08-16 and 0.1.3 dated 2022-03-08
DESCRIPTION | 6 +++--- MD5 | 12 +++++++----- NEWS.md | 4 ++++ R/tramTMB.R | 26 +------------------------- build/vignette.rds |binary inst/doc/tramME.pdf |binary vignettes/MEE-example-analyses.pdf |only vignettes/MEE-example-analyses.tex |only 8 files changed, 15 insertions(+), 33 deletions(-)
Title: Create Custom Taxonomies Based on the NCBI Taxonomy and GBIF
Backbone Taxonomy
Description: The NCBI taxonomy is a popular resource for taxonomic studies but it only contains
data on species with sequence data whereas the GBIF has a more extensive coverage of
extinct species. Taxonbridge is useful for the creation and analysis of custom taxonomies
based on the NCBI taxonomy and GBIF backbone taxonomy.
Author: Werner Veldsman [aut, cre]
Maintainer: Werner Veldsman <wernerpieter.veldsman@unil.ch>
Diff between taxonbridge versions 1.0.3 dated 2022-02-22 and 1.0.4 dated 2022-03-08
DESCRIPTION | 6 - MD5 | 31 ++++----- NAMESPACE | 1 NEWS.md | 7 ++ R/get_methods.R | 10 ++- R/helper_methods.R | 45 ++++++++++++- R/load_methods.R | 2 README.md | 4 - inst/doc/Examples.R | 44 +++++++++++++ inst/doc/Examples.Rmd | 100 +++++++++++++++++++++++++++++- inst/doc/Examples.html | 116 ++++++++++++++++++++++++++++++++++- man/annotate.Rd |only man/fuzzy_search.Rd | 4 - man/get_inconsistencies.Rd | 2 man/get_validity.Rd | 4 - tests/testthat/test-helper_methods.R | 8 ++ vignettes/Examples.Rmd | 100 +++++++++++++++++++++++++++++- 17 files changed, 451 insertions(+), 33 deletions(-)
Title: The Skew-Normal and Related Distributions Such as the Skew-t and
the SUN
Description: Build and manipulate probability distributions of the skew-normal
family and some related ones, notably the skew-t and the SUN families.
For the skew-normal and the skew-t distributions, statistical methods are
provided for data fitting and model diagnostics, in the univariate and the
multivariate case.
Author: Adelchi Azzalini [aut, cre]
Maintainer: Adelchi Azzalini <adelchi.azzalini@unipd.it>
Diff between sn versions 2.0.1 dated 2021-11-26 and 2.0.2 dated 2022-03-08
DESCRIPTION | 8 +- MD5 | 20 ++--- NEWS | 7 + R/sn-funct.R | 171 +++++++++++++++++++++++++++--------------------- R/sun.R | 32 ++++---- build/partial.rdb |binary man/dmsn.Rd | 7 + man/dmst.Rd | 4 - man/dsn.Rd | 16 ++-- man/summary.SUNdistr.Rd | 8 +- man/zeta.Rd | 5 - 11 files changed, 159 insertions(+), 119 deletions(-)
Title: Power Analysis for Generalised Linear Mixed Models by Simulation
Description: Calculate power for generalised linear mixed models, using
simulation. Designed to work with models fit using the 'lme4' package.
Described in Green and MacLeod, 2016 <doi:10.1111/2041-210X.12504>.
Author: Peter Green [aut, cre] ,
Catriona MacLeod [aut],
Phillip Alday [ctb]
Maintainer: Peter Green <simr.peter@gmail.com>
Diff between simr versions 1.0.5 dated 2019-01-29 and 1.0.6 dated 2022-03-08
DESCRIPTION | 28 ++-- MD5 | 26 ++-- NEWS.md | 8 + R/maybe.R | 32 ++++- build/vignette.rds |binary inst/doc/examples.R | 40 +++--- inst/doc/examples.html | 283 +++++++++++++++++++++++++++++++--------------- inst/doc/fromscratch.R | 12 - inst/doc/fromscratch.html | 197 +++++++++++++++++++++----------- man/powerCurve.Rd | 16 ++ man/powerSim.Rd | 12 + man/print.powerSim.Rd | 31 +++-- man/tests.Rd | 6 tests/testthat/test_aaa.R | 2 14 files changed, 465 insertions(+), 228 deletions(-)
Title: Path Diagrams and Visual Analysis of Various SEM Packages'
Output
Description: Path diagrams and visual analysis of various SEM packages' output.
Author: Sacha Epskamp [aut, cre],
Simon Stuber [ctb],
Jason Nak [ctb],
Myrthe Veenman [ctb],
Terrence D. Jorgensen [ctb]
Maintainer: Sacha Epskamp <mail@sachaepskamp.com>
Diff between semPlot versions 1.1.4 dated 2022-02-21 and 1.1.5 dated 2022-03-08
DESCRIPTION | 6 MD5 | 20 NAMESPACE | 110 ++-- NEWS | 200 ++++---- R/lavaan.R | 244 +++++----- R/semPathsHelperFuns.R | 314 ++++++------- R/semSyntax.R | 1 man/modelMatrices.Rd | 22 man/semMatrixAlgebra.Rd | 6 man/semPaths.Rd | 1138 ++++++++++++++++++++++++------------------------ man/semSyntax.Rd | 9 11 files changed, 1042 insertions(+), 1028 deletions(-)
Title: Collection of Machine Learning Datasets for Supervised Machine
Learning
Description: Contains a collection of datasets for working with machine learning tasks.
It will contain datasets for supervised machine learning Jiang (2020)<doi:10.1016/j.beth.2020.05.002> and will include datasets for classification and regression.
The aim of this package is to use data generated around health and other domains.
Author: Gary Hutson [aut, cre] ,
Asif Laldin [aut],
Isabella Velásquez [aut]
Maintainer: Gary Hutson <hutsons-hacks@outlook.com>
Diff between MLDataR versions 0.1.2 dated 2022-02-02 and 0.1.3 dated 2022-03-08
DESCRIPTION | 14 MD5 | 40 - NEWS.md | 29 R/PreDiabetes.R | 48 - R/care_home_incidents.R | 62 +- R/csgo.R |only R/diabetes_data.R | 66 +- R/heartdisease.R | 102 +-- R/long_stayers.R |only R/thyroid_disease.R | 212 +++--- build/vignette.rds |binary data/csgo.rda |only data/long_stayers.rda |only inst/doc/MLDataR.R | 362 +++++++---- inst/doc/MLDataR.Rmd | 595 +++++++++++-------- inst/doc/MLDataR.html | 1383 +++++++++++++++++++++------------------------ man/PreDiabetes.Rd | 82 +- man/care_home_incidents.Rd | 98 +-- man/csgo.Rd |only man/diabetes_data.Rd | 100 +-- man/heartdisease.Rd | 132 ++-- man/long_stayers.Rd |only man/thyroid_disease.Rd | 244 +++---- vignettes/MLDataR.Rmd | 595 +++++++++++-------- 24 files changed, 2210 insertions(+), 1954 deletions(-)
Title: Nonparametric Preprocessing for Parametric Causal Inference
Description: Selects matched samples of the original treated and
control groups with similar covariate distributions -- can be
used to match exactly on covariates, to match on propensity
scores, or perform a variety of other matching procedures. The
package also implements a series of recommendations offered in
Ho, Imai, King, and Stuart (2007) <DOI:10.1093/pan/mpl013>. (The
'gurobi' package, which is not on CRAN, is optional and comes with
an installation of the Gurobi Optimizer, available at
<https://www.gurobi.com>. The 'optmatch' package may also not be on CRAN;
see the 'MatchIt' documentation for instructions on installing it.)
Author: Daniel Ho [aut] ,
Kosuke Imai [aut] ,
Gary King [aut] ,
Elizabeth Stuart [aut] ,
Alex Whitworth [ctb],
Noah Greifer [ctb, cre, aut]
Maintainer: Noah Greifer <noah.greifer@gmail.com>
Diff between MatchIt versions 4.3.3 dated 2022-01-20 and 4.3.4 dated 2022-03-08
DESCRIPTION | 17 MD5 | 77 - NAMESPACE | 3 NEWS.md | 8 R/match.data.R | 2 R/matchit.R | 6 build/MatchIt.pdf |only build/partial.rdb |binary build/vignette.rds |binary inst/doc/MatchIt.R | 14 inst/doc/MatchIt.Rmd | 21 inst/doc/MatchIt.html | 677 +++++++++++- inst/doc/assessing-balance.R | 6 inst/doc/assessing-balance.Rmd | 14 inst/doc/assessing-balance.html | 1021 ++++++++++++++++--- inst/doc/estimating-effects.R | 6 inst/doc/estimating-effects.Rmd | 14 inst/doc/estimating-effects.html | 1622 +++++++++++++++++++++++++++---- inst/doc/matching-methods.Rmd | 2 inst/doc/matching-methods.html | 1293 ++++++++++++++++++++++-- inst/doc/sampling-weights.R | 7 inst/doc/sampling-weights.Rmd | 11 inst/doc/sampling-weights.html | 381 ++++++- man/distance.Rd | 30 man/figures/README-unnamed-chunk-5-1.png |binary man/macros/macros.Rd | 8 man/matchit.Rd | 4 man/method_cardinality.Rd | 8 man/method_full.Rd | 26 man/method_genetic.Rd | 13 man/method_nearest.Rd | 4 man/method_optimal.Rd | 29 man/plot.matchit.Rd | 2 man/plot.summary.matchit.Rd | 2 man/summary.matchit.Rd | 2 vignettes/MatchIt.Rmd | 21 vignettes/assessing-balance.Rmd | 14 vignettes/estimating-effects.Rmd | 14 vignettes/matching-methods.Rmd | 2 vignettes/sampling-weights.Rmd | 11 40 files changed, 4657 insertions(+), 735 deletions(-)
Title: Tools for Handling Spatial Objects
Description: Please note that 'maptools' will be retired by the end of 2023, plan transition at your earliest convenience; some functionality will be moved to 'sp'. Set of tools for manipulating geographic data. It includes binary access to 'GSHHG' shoreline files. The package also provides interface wrappers for exchanging spatial objects with packages such as 'PBSmapping', 'spatstat.geom', 'maps', and others.
Author: Roger Bivand [cre, aut] ,
Nicholas Lewin-Koh [aut],
Edzer Pebesma [ctb],
Eric Archer [ctb],
Adrian Baddeley [ctb],
Nick Bearman [ctb],
Hans-Jörg Bibiko [ctb],
Steven Brey [ctb],
Jonathan Callahan [ctb],
German Carrillo [ctb],
Stéphane Dray [ctb],
Dav [...truncated...]
Maintainer: Roger Bivand <Roger.Bivand@nhh.no>
Diff between maptools versions 1.1-2 dated 2021-09-07 and 1.1-3 dated 2022-03-08
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- NEWS.md | 6 +++++- build/vignette.rds |binary data/SplashDams.rda |binary data/wrld_simpl.rda |binary inst/doc/combine_maptools.pdf |binary man/lineLabel.Rd | 6 ++++-- man/pointLabelLattice.Rd | 8 +++++--- 9 files changed, 26 insertions(+), 18 deletions(-)
Title: Historical and Ahistorical Population Projection Matrix Analysis
Description: Complete analytical environment for the construction and analysis
of matrix population models and integral projection models.
Includes the ability to construct historical matrices, which are
2d matrices comprising 3 consecutive times of demographic
information. Estimates both raw and function-based forms of
historical and standard ahistorical matrices. It also estimates
function-based age-by-stage matrices and raw and function-based
Leslie matrices.
Author: Richard P. Shefferson [aut, cre]
,
Johan Ehrlen [aut]
Maintainer: Richard P. Shefferson <cdorm@g.ecc.u-tokyo.ac.jp>
Diff between lefko3 versions 4.2.0 dated 2022-01-19 and 5.0.1 dated 2022-03-08
lefko3-4.2.0/lefko3/src/MatrixEstimators.cpp |only lefko3-4.2.0/lefko3/src/popchar.cpp |only lefko3-4.2.0/lefko3/src/popdynamics.cpp |only lefko3-5.0.1/lefko3/DESCRIPTION | 14 lefko3-5.0.1/lefko3/MD5 | 151 lefko3-5.0.1/lefko3/NAMESPACE | 3 lefko3-5.0.1/lefko3/NEWS | 55 lefko3-5.0.1/lefko3/R/RcppExports.R | 2584 ++++++++-- lefko3-5.0.1/lefko3/R/datamanag.R | 100 lefko3-5.0.1/lefko3/R/lefko3-package.R | 1 lefko3-5.0.1/lefko3/R/matrixcreation.R | 5694 ++++++++++++----------- lefko3-5.0.1/lefko3/R/modelselection.R | 1288 ----- lefko3-5.0.1/lefko3/R/popdyn.R | 135 lefko3-5.0.1/lefko3/inst/doc/Chapter1.Rmd | 2 lefko3-5.0.1/lefko3/inst/doc/Chapter1.html | 2191 +++++++- lefko3-5.0.1/lefko3/inst/doc/Chapter2.Rmd | 15 lefko3-5.0.1/lefko3/inst/doc/Chapter2.html | 1276 ++++- lefko3-5.0.1/lefko3/inst/doc/Chapter5.Rmd | 155 lefko3-5.0.1/lefko3/inst/doc/Chapter5.html | 1282 ++++- lefko3-5.0.1/lefko3/inst/doc/Chapter6.Rmd | 127 lefko3-5.0.1/lefko3/inst/doc/Chapter6.html | 1049 +++- lefko3-5.0.1/lefko3/inst/doc/Chapter8.Rmd | 115 lefko3-5.0.1/lefko3/inst/doc/Chapter8.html | 1157 +++- lefko3-5.0.1/lefko3/inst/doc/Chapter9.Rmd | 2 lefko3-5.0.1/lefko3/inst/doc/Chapter9.html | 461 + lefko3-5.0.1/lefko3/man/aflefko2.Rd | 312 - lefko3-5.0.1/lefko3/man/arlefko2.Rd |only lefko3-5.0.1/lefko3/man/f_projection3.Rd |only lefko3-5.0.1/lefko3/man/flefko2.Rd | 305 - lefko3-5.0.1/lefko3/man/flefko3.Rd | 313 - lefko3-5.0.1/lefko3/man/fleslie.Rd | 135 lefko3-5.0.1/lefko3/man/hist_null.Rd | 9 lefko3-5.0.1/lefko3/man/historicalize3.Rd | 9 lefko3-5.0.1/lefko3/man/lmean.Rd | 2 lefko3-5.0.1/lefko3/man/modelsearch.Rd | 3 lefko3-5.0.1/lefko3/man/projection3.Rd | 34 lefko3-5.0.1/lefko3/man/rlefko2.Rd | 26 lefko3-5.0.1/lefko3/man/rlefko3.Rd | 16 lefko3-5.0.1/lefko3/man/rleslie.Rd | 15 lefko3-5.0.1/lefko3/man/sensitivity3.lefkoMat.Rd | 15 lefko3-5.0.1/lefko3/man/sensitivity3.list.Rd | 18 lefko3-5.0.1/lefko3/man/slambda3.Rd | 15 lefko3-5.0.1/lefko3/man/verticalize3.Rd | 11 lefko3-5.0.1/lefko3/src/DataManagement.cpp | 1973 +------ lefko3-5.0.1/lefko3/src/RcppExports.cpp | 811 +-- lefko3-5.0.1/lefko3/src/matsndyn.cpp |only lefko3-5.0.1/lefko3/vignettes/Ch5.15-1.png |binary lefko3-5.0.1/lefko3/vignettes/Ch5.16-1.png |binary lefko3-5.0.1/lefko3/vignettes/Ch5.19-1.png |binary lefko3-5.0.1/lefko3/vignettes/Ch5.20-1.png |binary lefko3-5.0.1/lefko3/vignettes/Ch5.21-1.png |binary lefko3-5.0.1/lefko3/vignettes/Ch5.25-1.png |binary lefko3-5.0.1/lefko3/vignettes/Ch5.26-1.png |binary lefko3-5.0.1/lefko3/vignettes/Ch5.29-1.png |only lefko3-5.0.1/lefko3/vignettes/Ch6.12-1.png |binary lefko3-5.0.1/lefko3/vignettes/Ch6.13-1.png |binary lefko3-5.0.1/lefko3/vignettes/Ch6.16-1.png |binary lefko3-5.0.1/lefko3/vignettes/Ch6.18-1.png |binary lefko3-5.0.1/lefko3/vignettes/Ch6.21-1.png |binary lefko3-5.0.1/lefko3/vignettes/Ch6.22-1.png |binary lefko3-5.0.1/lefko3/vignettes/Ch8.12-1.png |binary lefko3-5.0.1/lefko3/vignettes/Ch8.15-1.png |binary lefko3-5.0.1/lefko3/vignettes/Ch8.16-1.png |binary lefko3-5.0.1/lefko3/vignettes/Ch8.17-1.png |binary lefko3-5.0.1/lefko3/vignettes/Ch8.20-1.png |binary lefko3-5.0.1/lefko3/vignettes/Ch8.21-1.png |binary lefko3-5.0.1/lefko3/vignettes/Ch8.25-1.png |binary lefko3-5.0.1/lefko3/vignettes/Ch8.26-1.png |binary lefko3-5.0.1/lefko3/vignettes/Chapter1.Rmd | 2 lefko3-5.0.1/lefko3/vignettes/Chapter2.Rmd | 15 lefko3-5.0.1/lefko3/vignettes/Chapter2.Rmd.orig | 14 lefko3-5.0.1/lefko3/vignettes/Chapter5.Rmd | 155 lefko3-5.0.1/lefko3/vignettes/Chapter5.Rmd.orig | 100 lefko3-5.0.1/lefko3/vignettes/Chapter6.Rmd | 127 lefko3-5.0.1/lefko3/vignettes/Chapter6.Rmd.orig | 66 lefko3-5.0.1/lefko3/vignettes/Chapter8.Rmd | 115 lefko3-5.0.1/lefko3/vignettes/Chapter8.Rmd.orig | 60 lefko3-5.0.1/lefko3/vignettes/Chapter9.Rmd | 2 lefko3-5.0.1/lefko3/vignettes/Chapter9.Rmd.orig | 2 lefko3-5.0.1/lefko3/vignettes/Lefko3Tutorial.bib | 50 80 files changed, 13720 insertions(+), 8867 deletions(-)
Title: A Shiny Interface for Simple Data Management
Description: Launches a shiny application generating code to
view tables in several ways,
import/export tables,
modify tables,
make some basic graphics.
'IGoR' is a graphic user interface designed to help beginners
using simple functions around table management and exploration.
Inspired by 'Rcmdr', 'IGoR' is a code generator that, with simple inputs under a Shiny application,
provides R code mainly built around the 'tidyverse' or some packages in the direct line of the Mosaic project:
the 'rio' and 'ggformula' packages.
The generated code doesn't depend on IGoR and can be manually modified by the user or copied elsewhere.
Author: Jean-Luc Lipatz [aut, cre], Bernard Gestin [ctb]
Maintainer: Jean-Luc Lipatz <jllipatz@protonmail.com>
Diff between IGoRRR versions 0.3.0 dated 2022-02-25 and 0.3.1 dated 2022-03-08
DESCRIPTION | 8 +++---- MD5 | 33 +++++++++++++++-------------- R/common.R | 8 ++++++- R/go.R | 15 +++++++++++-- R/init.R | 11 ++++++++- R/page_cut.R | 2 - R/page_edit.R | 2 - R/page_gather.R | 2 - R/page_import.R | 11 +++++++-- R/page_maps.R | 10 ++------ R/page_reclass.R | 45 ++++++++++++++++++++++++---------------- R/page_summarise.R | 2 - R/page_tables.R | 2 + R/page_tabular.R | 2 - R/page_union.R | 5 +--- inst/images/R_logo.png |only inst/misc/news.txt | 14 ++++++++++++ inst/text/FR.json | 55 +++++++++++++++++++++++++++++++------------------ 18 files changed, 147 insertions(+), 80 deletions(-)
Title: Computation of Satellite Position
Description: Provides basic functionalities to calculate the position of
satellites given a known state vector. The package includes implementations
of the SGP4 and SDP4 simplified perturbation models to propagate orbital
state vectors, as well as utilities to read TLE files and convert coordinates
between different frames of reference. Several of the functionalities of the
package (including the high-precision numerical orbit propagator) require
the coefficients and data included in the 'asteRiskData' package, available
in a 'drat' repository. To install this data package, run
'install.packages("asteRiskData", repos="https://rafael-ayala.github.io/drat/")'.
Felix R. Hoots, Ronald L. Roehrich and T.S. Kelso (1988) <https://celestrak.com/NORAD/documentation/spacetrk.pdf>.
David Vallado, Paul Crawford, Richard Hujsak and T.S. Kelso (2012) <doi:10.2514/6.2006-6753>.
Felix R. Hoots, Paul W. Schumacher Jr. and Robert A. Glover (2014) <doi:10.2514/1.9161>.
Author: Rafael Ayala [aut, cre] ,
Daniel Ayala [aut] ,
David Ruiz [aut] ,
Lara Selles Vidal [aut]
Maintainer: Rafael Ayala <rafael.ayala@oist.jp>
Diff between asteRisk versions 1.3.0 dated 2022-02-07 and 1.4.0 dated 2022-03-08
DESCRIPTION | 6 MD5 | 39 NAMESPACE | 3 NEWS | 5 R/RcppExports.R | 4 R/constants.R | 12 R/coordinatesTransformations_auxiliaryFunctions.R | 6 R/fileParsers.R | 5 R/hpop.R | 119 ++ R/hpop_acceleration.R | 406 +++++---- R/hpop_auxiliaryFunctions.R | 251 ++++- R/utils.R | 18 inst/doc/asteRisk.R | 2 inst/doc/asteRisk.Rmd | 2 inst/doc/asteRisk.html | 8 man/JPLephemerides.Rd |only man/hpop.Rd | 83 + man/readTLE.Rd | 3 src/RcppExports.cpp | 12 src/utils.cpp | 945 ++++++++++++++++++++++ vignettes/asteRisk.Rmd | 2 21 files changed, 1668 insertions(+), 263 deletions(-)
Title: Resampling Methods for Triangular and Trapezoidal Fuzzy Numbers
Description: The classical (i.e. Efron's, see Efron and Tibshirani (1994, ISBN:978-0412042317) "An Introduction to the Bootstrap") bootstrap is widely used for both the real (i.e. "crisp") and fuzzy data.
The main aim of the algorithms implemented in this package is to overcome a problem with repetition of a few distinct values and to create fuzzy numbers, which are "similar" (but not the same) to values from the initial sample.
To do this, different characteristics of triangular/trapezoidal numbers are kept (like the value, the ambiguity, etc., see Grzegorzewski et al. <doi:10.2991/eusflat-19.2019.68>, Grzegorzewski et al. (2020) <doi:10.2991/ijcis.d.201012.003>, Grzegorzewski et al. (2020) <doi:10.34768/amcs-2020-0022>, Grzegorzewski and Romaniuk (2022) <doi:10.1007/978-3-030-95929-6_3>, Romaniuk and Hryniewicz (2019) <doi:10.1007/s00500-018-3251-5>).
Some additional procedures related to these resampling methods are also provided,
like calculation of the Bertoluzza et al.'s distance (aka the mid/spread distance, see Bertoluzza et al. (1995) "On a new class of distances between fuzzy numbers")
and estimation of the p-value of the one-sample bootstrapped test for the mean (see Lubiano et al. (2016, <doi:10.1016/j.ejor.2015.11.016>)).
Additionally, there are procedures which randomly generate trapezoidal fuzzy numbers using some well-known statistical distributions.
Author: Maciej Romaniuk [cre],
Przemyslaw Grzegorzewski [aut],
Olgierd Hryniewicz [aut]
Maintainer: Maciej Romaniuk <mroman@ibspan.waw.pl>
Diff between FuzzyResampling versions 0.4.0 dated 2022-01-05 and 0.4.1 dated 2022-03-08
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- NEWS.md | 5 +++++ R/SEResamplingMean.R | 5 +++-- R/VAAmethod.R | 7 ++++--- README.md | 26 ++++++++++++++++---------- man/FuzzyResampling-package.Rd | 2 +- man/SEResamplingMean.Rd | 5 +++-- man/VAAmethod.Rd | 7 ++++--- 9 files changed, 48 insertions(+), 33 deletions(-)
More information about FuzzyResampling at CRAN
Permanent link
Title: View and Browse Code Using Flow Diagrams
Description: Visualize as flow diagrams the logic of functions, expressions or
scripts in a static way or when running a call, and ease debugging. Advanced
features include analogs to 'debug' and 'debugonce' to target specific functions to draw,
an utility to draw the calls used in the tests of the package in a markdown report,
and an utility to draw all the functions of one package in a markdown report.
Author: Antoine Fabri [aut, cre]
Maintainer: Antoine Fabri <antoine.fabri@gmail.com>
Diff between flow versions 0.0.2 dated 2021-08-13 and 0.1.0 dated 2022-03-08
flow-0.0.2/flow/inst/doc/V01_simple_usage.R |only flow-0.0.2/flow/inst/doc/V01_simple_usage.Rmd |only flow-0.0.2/flow/inst/doc/V01_simple_usage.html |only flow-0.0.2/flow/inst/doc/V02_export_diagrams.R |only flow-0.0.2/flow/inst/doc/V02_export_diagrams.Rmd |only flow-0.0.2/flow/inst/doc/V02_export_diagrams.html |only flow-0.0.2/flow/vignettes/V01_simple_usage.Rmd |only flow-0.0.2/flow/vignettes/V02_export_diagrams.Rmd |only flow-0.1.0/flow/DESCRIPTION | 17 flow-0.1.0/flow/MD5 | 146 +- flow-0.1.0/flow/NAMESPACE | 52 flow-0.1.0/flow/NEWS.md | 119 +- flow-0.1.0/flow/R/01_0_flow_data.R | 268 ++-- flow-0.1.0/flow/R/01_1_0_add_data_from_expr.R | 52 flow-0.1.0/flow/R/01_1_1_buid_blocks.R | 138 +- flow-0.1.0/flow/R/01_1_2_add_data_from_standard_block.R | 68 - flow-0.1.0/flow/R/01_1_3_add_data_from_if_block.R | 304 ++--- flow-0.1.0/flow/R/01_1_4_add_data_from_for_block.R | 106 - flow-0.1.0/flow/R/01_1_5_add_data_from_while_block.R | 108 - flow-0.1.0/flow/R/01_1_6_add_data_from_repeat_block.R | 96 - flow-0.1.0/flow/R/01_1_7_data_building_utils.R | 86 - flow-0.1.0/flow/R/02_build_nomnoml_code.R | 344 ++--- flow-0.1.0/flow/R/03_0_flow_view.R | 224 +-- flow-0.1.0/flow/R/03_1_flow_view_nomnoml.R | 125 +- flow-0.1.0/flow/R/03_2_0_flow_view_plantuml.R | 244 ++-- flow-0.1.0/flow/R/03_2_1_build_plantuml_code.R | 326 ++--- flow-0.1.0/flow/R/03_2_2_plantuml_utils.R | 158 +- flow-0.1.0/flow/R/04_0_flow_run.R | 372 +++--- flow-0.1.0/flow/R/04_1_flow_run_utils.R | 406 +++---- flow-0.1.0/flow/R/05_flow_debug.R | 178 +-- flow-0.1.0/flow/R/06_flow_doc.R | 574 ++++----- flow-0.1.0/flow/R/07_C.R | 545 ++++----- flow-0.1.0/flow/R/08_flow_test.R | 508 ++++---- flow-0.1.0/flow/R/09_flow_view_deps.R |only flow-0.1.0/flow/R/10_flow_view_vars.R |only flow-0.1.0/flow/R/11_flow_view_shiny.R |only flow-0.1.0/flow/R/20_addin.R | 98 - flow-0.1.0/flow/R/30_utils.R | 579 ++++++---- flow-0.1.0/flow/R/flow-package.R |only flow-0.1.0/flow/R/zz.R | 52 flow-0.1.0/flow/README.md | 137 +- flow-0.1.0/flow/build/vignette.rds |binary flow-0.1.0/flow/inst/doc/addins.R |only flow-0.1.0/flow/inst/doc/addins.Rmd |only flow-0.1.0/flow/inst/doc/addins.html |only flow-0.1.0/flow/inst/doc/advanced-debugging.R |only flow-0.1.0/flow/inst/doc/advanced-debugging.Rmd |only flow-0.1.0/flow/inst/doc/advanced-debugging.html |only flow-0.1.0/flow/inst/doc/customize.R |only flow-0.1.0/flow/inst/doc/customize.Rmd |only flow-0.1.0/flow/inst/doc/customize.html |only flow-0.1.0/flow/inst/doc/experimental-functions.R |only flow-0.1.0/flow/inst/doc/experimental-functions.Rmd |only flow-0.1.0/flow/inst/doc/experimental-functions.html |only flow-0.1.0/flow/inst/doc/export-diagrams.R |only flow-0.1.0/flow/inst/doc/export-diagrams.Rmd |only flow-0.1.0/flow/inst/doc/export-diagrams.html |only flow-0.1.0/flow/inst/doc/nested-functions.R |only flow-0.1.0/flow/inst/doc/nested-functions.Rmd |only flow-0.1.0/flow/inst/doc/nested-functions.html |only flow-0.1.0/flow/inst/doc/reports.R |only flow-0.1.0/flow/inst/doc/reports.Rmd |only flow-0.1.0/flow/inst/doc/reports.html |only flow-0.1.0/flow/inst/doc/simple-usage.R |only flow-0.1.0/flow/inst/doc/simple-usage.Rmd |only flow-0.1.0/flow/inst/doc/simple-usage.html |only flow-0.1.0/flow/inst/rstudio/addins.dcf | 20 flow-0.1.0/flow/man/figures/lifecycle-archived.svg |only flow-0.1.0/flow/man/figures/lifecycle-defunct.svg |only flow-0.1.0/flow/man/figures/lifecycle-deprecated.svg |only flow-0.1.0/flow/man/figures/lifecycle-experimental.svg |only flow-0.1.0/flow/man/figures/lifecycle-maturing.svg |only flow-0.1.0/flow/man/figures/lifecycle-questioning.svg |only flow-0.1.0/flow/man/figures/lifecycle-stable.svg |only flow-0.1.0/flow/man/figures/lifecycle-superseded.svg |only flow-0.1.0/flow/man/flow-package.Rd |only flow-0.1.0/flow/man/flow_debug.Rd | 148 +- flow-0.1.0/flow/man/flow_doc.Rd | 104 - flow-0.1.0/flow/man/flow_draw.Rd | 60 - flow-0.1.0/flow/man/flow_test.Rd | 90 - flow-0.1.0/flow/man/flow_view.Rd | 166 +- flow-0.1.0/flow/man/flow_view_deps.Rd |only flow-0.1.0/flow/man/flow_view_shiny.Rd |only flow-0.1.0/flow/man/flow_view_vars.Rd |only flow-0.1.0/flow/tests/testthat.R | 8 flow-0.1.0/flow/tests/testthat/_snaps/01_flow_data_input_types.md | 230 +-- flow-0.1.0/flow/tests/testthat/_snaps/02_flow_data_if.md | 398 +++--- flow-0.1.0/flow/tests/testthat/_snaps/03_flow_data_loops.md | 267 ++-- flow-0.1.0/flow/tests/testthat/_snaps/04_flow_data_arguments.md | 216 +-- flow-0.1.0/flow/tests/testthat/test-01_flow_data_input_types.R | 150 +- flow-0.1.0/flow/tests/testthat/test-02_flow_data_if.R | 142 +- flow-0.1.0/flow/tests/testthat/test-03_flow_data_loops.R | 98 - flow-0.1.0/flow/tests/testthat/test-04_flow_data_arguments.R | 120 +- flow-0.1.0/flow/tests/testthat/test-05_flow_run.R | 34 flow-0.1.0/flow/vignettes/addins.Rmd |only flow-0.1.0/flow/vignettes/advanced-debugging.Rmd |only flow-0.1.0/flow/vignettes/customize.Rmd |only flow-0.1.0/flow/vignettes/experimental-functions.Rmd |only flow-0.1.0/flow/vignettes/export-diagrams.Rmd |only flow-0.1.0/flow/vignettes/nested-functions.Rmd |only flow-0.1.0/flow/vignettes/reports.Rmd |only flow-0.1.0/flow/vignettes/simple-usage.Rmd |only 102 files changed, 4457 insertions(+), 4224 deletions(-)
Title: An Interactive Editor for Viewing, Entering, Filtering & Editing
Data
Description: An interactive editor built on 'rhandsontable' to allow the
interactive viewing, entering, filtering and editing of data in R
<https://dillonhammill.github.io/DataEditR/>.
Author: Dillon Hammill [aut, cre]
Maintainer: Dillon Hammill <Dillon.Hammill@anu.edu.au>
Diff between DataEditR versions 0.1.4 dated 2021-12-10 and 0.1.5 dated 2022-03-08
DESCRIPTION | 12 +-- MD5 | 30 ++++---- NAMESPACE | 2 NEWS.md | 6 + R/dataEdit.R | 57 +++++++++++---- R/dataInput.R | 118 +++++++++++++++++++++++--------- R/dataOutput.R | 2 R/data_edit.R | 150 ++++++++++++++++++++++++++-------------- R/helpers.R | 49 ++++++++----- README.md | 10 +- inst/doc/DataEditR.R | 18 ++++ inst/doc/DataEditR.Rmd | 20 ++++- inst/doc/DataEditR.html | 51 +++++-------- man/dataEdit.Rd | 6 + man/dataSync.Rd | 176 ++++++++++++++++++++++++------------------------ vignettes/DataEditR.Rmd | 20 ++++- 16 files changed, 452 insertions(+), 275 deletions(-)
Title: Interface to 'MLflow'
Description: R interface to 'MLflow', open source platform for
the complete machine learning life cycle, see <https://mlflow.org/>.
This package supports installing 'MLflow', tracking experiments,
creating and running projects, and saving and serving models.
Author: Matei Zaharia [aut, cre],
Javier Luraschi [aut],
Kevin Kuo [aut] ,
RStudio [cph]
Maintainer: Matei Zaharia <matei@databricks.com>
Diff between mlflow versions 1.23.0 dated 2022-01-25 and 1.24.0 dated 2022-03-08
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- R/install.R | 2 +- R/model.R | 2 +- R/python.R | 2 +- tests/testthat/test-model.R | 12 ++++++++++++ 6 files changed, 23 insertions(+), 11 deletions(-)
Title: Processing METAR Weather Reports
Description: Allows to download current and historical METAR weather reports
extract and parse basic parameters and present main weather information.
Current reports are downloaded from Aviation Weather Center
<https://www.aviationweather.gov/metar> and historical reports from
Iowa Environmental Mesonet web page of Iowa State University
ASOS-AWOS-METAR <http://mesonet.agron.iastate.edu/AWOS/>.
Author: Pawel Cwiek [aut, cre],
David Megginson [ctb] ,
Greg Thompson [ctb]
Maintainer: Pawel Cwiek <prc.altodato@gmail.com>
Diff between pmetar versions 0.3.2 dated 2021-11-04 and 0.3.3 dated 2022-03-08
DESCRIPTION | 6 MD5 | 16 - R/metar_airport.R | 5 R/metar_decode.R | 1 README.md | 2 inst/doc/pmetar.html | 375 +++++++++++++++++++++++++++++++----- man/metar_airport.Rd | 1 man/metar_decode.Rd | 1 tests/testthat/test_metar_airport.R | 22 +- 9 files changed, 353 insertions(+), 76 deletions(-)
Title: Capture-Mark-Recapture Analysis using Multiple Non-Invasive
Marks
Description: Traditional and spatial capture-mark-recapture analysis with
multiple non-invasive marks. The models implemented in 'multimark' combine
encounter history data arising from two different non-invasive "marks",
such as images of left-sided and right-sided pelage patterns of bilaterally
asymmetrical species, to estimate abundance and related demographic
parameters while accounting for imperfect detection. Bayesian models are
specified using simple formulae and fitted using Markov chain Monte Carlo.
Addressing deficiencies in currently available software, 'multimark' also
provides a user-friendly interface for performing Bayesian multimodel
inference using non-spatial or spatial capture-recapture data consisting of a single
conventional mark or multiple non-invasive marks. See McClintock (2015) <doi:10.1002/ece3.1676> and Maronde et al. (2020) <doi:10.1002/ece3.6990>.
Author: Brett T. McClintock [aut, cre],
Acho Arnold [ctb, cph] ,
Barry Brown [ctb] ,
James Lovato [ctb] ,
John Burkardt [ctb] ,
Cleve Moler [ctb] ,
Arjun Gopalaswamy [ctb]
Maintainer: Brett T. McClintock <brett.mcclintock@noaa.gov>
Diff between multimark versions 2.1.3 dated 2021-09-15 and 2.1.4 dated 2022-03-08
DESCRIPTION | 10 ++++----- MD5 | 6 ++--- NEWS | 7 ++++++ src/ranlib.c | 63 +++++++++++++++++++++++++++++------------------------------ 4 files changed, 46 insertions(+), 40 deletions(-)
Title: Joint Species Distribution Models
Description: Fits joint species distribution models ('jSDM')
in a hierarchical Bayesian framework (Warton et al. 2015
<doi:10.1016/j.tree.2015.09.007>). The Gibbs sampler is written
in C++. It uses 'Rcpp', 'Armadillo' and 'GSL' to maximize computation
efficiency.
Author: Jeanne Clément [aut, cre] ,
Ghislain Vieilledent [aut] ,
Frédéric Gosselin [ctb] ,
CIRAD [cph, fnd]
Maintainer: Jeanne Clément <jeanne.clement16@laposte.net>
Diff between jSDM versions 0.1.0 dated 2019-07-02 and 0.2.0 dated 2022-03-08
jSDM-0.1.0/jSDM/R/jSDM_binomial.R |only jSDM-0.1.0/jSDM/R/jSDM_probit_block.R |only jSDM-0.1.0/jSDM/man/jSDM_binomial.Rd |only jSDM-0.1.0/jSDM/man/jSDM_probit_block.Rd |only jSDM-0.1.0/jSDM/src/Rcpp_jSDM_binomial.cpp |only jSDM-0.1.0/jSDM/src/Rcpp_jSDM_probit_block.cpp |only jSDM-0.1.0/jSDM/tests/testthat/test-jSDM_binomial.R |only jSDM-0.1.0/jSDM/tests/testthat/test-jSDM_probit_block.R |only jSDM-0.2.0/jSDM/DESCRIPTION | 43 jSDM-0.2.0/jSDM/MD5 | 164 - jSDM-0.2.0/jSDM/NAMESPACE | 53 jSDM-0.2.0/jSDM/NEWS.md | 24 jSDM-0.2.0/jSDM/R/RcppExports.R | 192 + jSDM-0.2.0/jSDM/R/get_enviro_cor.R |only jSDM-0.2.0/jSDM/R/get_residual_cor.R | 175 + jSDM-0.2.0/jSDM/R/hidden.R | 299 +- jSDM-0.2.0/jSDM/R/jSDM-package.R |only jSDM-0.2.0/jSDM/R/jSDM_binomial_logit.R |only jSDM-0.2.0/jSDM/R/jSDM_binomial_probit.R |only jSDM-0.2.0/jSDM/R/jSDM_binomial_probit_long_format.R |only jSDM-0.2.0/jSDM/R/jSDM_binomial_probit_sp_constrained.R |only jSDM-0.2.0/jSDM/R/jSDM_poisson_log.R |only jSDM-0.2.0/jSDM/R/logit.R | 43 jSDM-0.2.0/jSDM/R/plot_associations.R |only jSDM-0.2.0/jSDM/R/plot_residual_cor.R | 99 jSDM-0.2.0/jSDM/R/predict.jSDM.R | 469 ++- jSDM-0.2.0/jSDM/R/zzz.R | 21 jSDM-0.2.0/jSDM/README.md | 54 jSDM-0.2.0/jSDM/build/partial.rdb |only jSDM-0.2.0/jSDM/build/vignette.rds |binary jSDM-0.2.0/jSDM/cleanup | 2 jSDM-0.2.0/jSDM/data/aravo.rda |only jSDM-0.2.0/jSDM/data/birds.rda |only jSDM-0.2.0/jSDM/data/eucalypts.rda |only jSDM-0.2.0/jSDM/data/fungi.rda |only jSDM-0.2.0/jSDM/data/mites.rda |only jSDM-0.2.0/jSDM/data/mosquitos.rda |only jSDM-0.2.0/jSDM/inst/doc/jSDM.R | 133 jSDM-0.2.0/jSDM/inst/doc/jSDM.Rmd | 322 +- jSDM-0.2.0/jSDM/inst/doc/jSDM.html | 1147 ++++---- jSDM-0.2.0/jSDM/inst/doc/proof.R |only jSDM-0.2.0/jSDM/inst/doc/proof.Rmd |only jSDM-0.2.0/jSDM/inst/doc/proof.html |only jSDM-0.2.0/jSDM/man/aravo.Rd |only jSDM-0.2.0/jSDM/man/birds.Rd |only jSDM-0.2.0/jSDM/man/eucalypts.Rd |only jSDM-0.2.0/jSDM/man/frogs.Rd | 6 jSDM-0.2.0/jSDM/man/fungi.Rd |only jSDM-0.2.0/jSDM/man/get_enviro_cor.Rd |only jSDM-0.2.0/jSDM/man/get_residual_cor.Rd | 137 jSDM-0.2.0/jSDM/man/inv_logit.Rd |only jSDM-0.2.0/jSDM/man/jSDM-package.Rd | 127 jSDM-0.2.0/jSDM/man/jSDM_binomial_logit.Rd |only jSDM-0.2.0/jSDM/man/jSDM_binomial_probit.Rd |only jSDM-0.2.0/jSDM/man/jSDM_binomial_probit_long_format.Rd |only jSDM-0.2.0/jSDM/man/jSDM_binomial_probit_sp_constrained.Rd |only jSDM-0.2.0/jSDM/man/jSDM_poisson_log.Rd |only jSDM-0.2.0/jSDM/man/logit.Rd | 62 jSDM-0.2.0/jSDM/man/mites.Rd |only jSDM-0.2.0/jSDM/man/mosquitos.Rd |only jSDM-0.2.0/jSDM/man/plot_associations.Rd |only jSDM-0.2.0/jSDM/man/plot_residual_cor.Rd | 124 jSDM-0.2.0/jSDM/man/predict.jSDM.Rd | 128 jSDM-0.2.0/jSDM/src/RcppExports.cpp | 1386 +++++++++- jSDM-0.2.0/jSDM/src/Rcpp_jSDM_binomial_logit.cpp |only jSDM-0.2.0/jSDM/src/Rcpp_jSDM_binomial_logit_fixed_site.cpp |only jSDM-0.2.0/jSDM/src/Rcpp_jSDM_binomial_logit_fixed_site_lv.cpp |only jSDM-0.2.0/jSDM/src/Rcpp_jSDM_binomial_logit_lv.cpp |only jSDM-0.2.0/jSDM/src/Rcpp_jSDM_binomial_logit_rand_site.cpp |only jSDM-0.2.0/jSDM/src/Rcpp_jSDM_binomial_logit_rand_site_lv.cpp |only jSDM-0.2.0/jSDM/src/Rcpp_jSDM_binomial_logit_traits.cpp |only jSDM-0.2.0/jSDM/src/Rcpp_jSDM_binomial_logit_traits_fixed_site.cpp |only jSDM-0.2.0/jSDM/src/Rcpp_jSDM_binomial_logit_traits_fixed_site_lv.cpp |only jSDM-0.2.0/jSDM/src/Rcpp_jSDM_binomial_logit_traits_lv.cpp |only jSDM-0.2.0/jSDM/src/Rcpp_jSDM_binomial_logit_traits_rand_site.cpp |only jSDM-0.2.0/jSDM/src/Rcpp_jSDM_binomial_logit_traits_rand_site_lv.cpp |only jSDM-0.2.0/jSDM/src/Rcpp_jSDM_binomial_probit.cpp |only jSDM-0.2.0/jSDM/src/Rcpp_jSDM_binomial_probit_fixed_site.cpp |only jSDM-0.2.0/jSDM/src/Rcpp_jSDM_binomial_probit_fixed_site_long_format.cpp |only jSDM-0.2.0/jSDM/src/Rcpp_jSDM_binomial_probit_fixed_site_lv.cpp |only jSDM-0.2.0/jSDM/src/Rcpp_jSDM_binomial_probit_fixed_site_lv_long_format.cpp |only jSDM-0.2.0/jSDM/src/Rcpp_jSDM_binomial_probit_long_format.cpp |only jSDM-0.2.0/jSDM/src/Rcpp_jSDM_binomial_probit_lv.cpp |only jSDM-0.2.0/jSDM/src/Rcpp_jSDM_binomial_probit_lv_long_format.cpp |only jSDM-0.2.0/jSDM/src/Rcpp_jSDM_binomial_probit_rand_site.cpp |only jSDM-0.2.0/jSDM/src/Rcpp_jSDM_binomial_probit_rand_site_long_format.cpp |only jSDM-0.2.0/jSDM/src/Rcpp_jSDM_binomial_probit_rand_site_lv.cpp |only jSDM-0.2.0/jSDM/src/Rcpp_jSDM_binomial_probit_rand_site_lv_long_format.cpp |only jSDM-0.2.0/jSDM/src/Rcpp_jSDM_binomial_probit_traits.cpp |only jSDM-0.2.0/jSDM/src/Rcpp_jSDM_binomial_probit_traits_fixed_site.cpp |only jSDM-0.2.0/jSDM/src/Rcpp_jSDM_binomial_probit_traits_fixed_site_long_format.cpp |only jSDM-0.2.0/jSDM/src/Rcpp_jSDM_binomial_probit_traits_fixed_site_lv.cpp |only jSDM-0.2.0/jSDM/src/Rcpp_jSDM_binomial_probit_traits_fixed_site_lv_long_format.cpp |only jSDM-0.2.0/jSDM/src/Rcpp_jSDM_binomial_probit_traits_long_format.cpp |only jSDM-0.2.0/jSDM/src/Rcpp_jSDM_binomial_probit_traits_lv.cpp |only jSDM-0.2.0/jSDM/src/Rcpp_jSDM_binomial_probit_traits_lv_long_format.cpp |only jSDM-0.2.0/jSDM/src/Rcpp_jSDM_binomial_probit_traits_rand_site.cpp |only jSDM-0.2.0/jSDM/src/Rcpp_jSDM_binomial_probit_traits_rand_site_long_format.cpp |only jSDM-0.2.0/jSDM/src/Rcpp_jSDM_binomial_probit_traits_rand_site_lv.cpp |only jSDM-0.2.0/jSDM/src/Rcpp_jSDM_binomial_probit_traits_rand_site_lv_long_format.cpp |only jSDM-0.2.0/jSDM/src/Rcpp_jSDM_poisson_log.cpp |only jSDM-0.2.0/jSDM/src/Rcpp_jSDM_poisson_log_fixed_site.cpp |only jSDM-0.2.0/jSDM/src/Rcpp_jSDM_poisson_log_fixed_site_lv.cpp |only jSDM-0.2.0/jSDM/src/Rcpp_jSDM_poisson_log_lv.cpp |only jSDM-0.2.0/jSDM/src/Rcpp_jSDM_poisson_log_rand_site.cpp |only jSDM-0.2.0/jSDM/src/Rcpp_jSDM_poisson_log_rand_site_lv.cpp |only jSDM-0.2.0/jSDM/src/Rcpp_jSDM_poisson_log_traits.cpp |only jSDM-0.2.0/jSDM/src/Rcpp_jSDM_poisson_log_traits_fixed_site.cpp |only jSDM-0.2.0/jSDM/src/Rcpp_jSDM_poisson_log_traits_fixed_site_lv.cpp |only jSDM-0.2.0/jSDM/src/Rcpp_jSDM_poisson_log_traits_lv.cpp |only jSDM-0.2.0/jSDM/src/Rcpp_jSDM_poisson_log_traits_rand_site.cpp |only jSDM-0.2.0/jSDM/src/Rcpp_jSDM_poisson_log_traits_rand_site_lv.cpp |only jSDM-0.2.0/jSDM/src/Rcpp_jSDM_useful.cpp | 526 +++ jSDM-0.2.0/jSDM/src/Rcpp_jSDM_useful.h | 48 jSDM-0.2.0/jSDM/tests/testthat/test-inv_logit.R |only jSDM-0.2.0/jSDM/tests/testthat/test-jSDM_binomial_logit.R |only jSDM-0.2.0/jSDM/tests/testthat/test-jSDM_binomial_probit.R |only jSDM-0.2.0/jSDM/tests/testthat/test-jSDM_binomial_probit_long_format.R |only jSDM-0.2.0/jSDM/tests/testthat/test-jSDM_binomial_probit_sp_constrained.R |only jSDM-0.2.0/jSDM/tests/testthat/test-jSDM_poisson_log.R |only jSDM-0.2.0/jSDM/tests/testthat/test-logit.R | 4 jSDM-0.2.0/jSDM/vignettes/bib/biblio-jSDM.bib | 321 ++ jSDM-0.2.0/jSDM/vignettes/figures/DAG-jSDM-rand.png |only jSDM-0.2.0/jSDM/vignettes/figures/Eucalyptus_.jpg |only jSDM-0.2.0/jSDM/vignettes/figures/Frogs_.jpg |only jSDM-0.2.0/jSDM/vignettes/figures/Fungi_.jpg |only jSDM-0.2.0/jSDM/vignettes/figures/Litoria_ewingii.jpg |binary jSDM-0.2.0/jSDM/vignettes/figures/Mosquitos_.jpg |only jSDM-0.2.0/jSDM/vignettes/figures/Oribatid_mites.jpg |only jSDM-0.2.0/jSDM/vignettes/figures/alpine_plants.png |only jSDM-0.2.0/jSDM/vignettes/figures/birds.jpg |only jSDM-0.2.0/jSDM/vignettes/figures/des.jpg |only jSDM-0.2.0/jSDM/vignettes/figures/oribatid-mites.png |only jSDM-0.2.0/jSDM/vignettes/figures/swiss_breeding_birds_atlas.jpg |only jSDM-0.2.0/jSDM/vignettes/jSDM.Rmd | 322 +- jSDM-0.2.0/jSDM/vignettes/proof.Rmd |only 136 files changed, 5065 insertions(+), 1366 deletions(-)
Title: Build Graphs for Landscape Genetics Analysis
Description: Build graphs for landscape genetics analysis. This set of
functions can be used to import and convert spatial and genetic data
initially in different formats, import landscape graphs created with
'GRAPHAB' software (Foltete et al., 2012) <doi:10.1016/j.envsoft.2012.07.002>,
make diagnosis plots of isolation by distance relationships in order to
choose how to build genetic graphs, create graphs with a large range of
pruning methods, weight their links with several genetic distances, plot
and analyse graphs, compare them with other graphs. It uses functions from
other packages such as 'adegenet'
(Jombart, 2008) <doi:10.1093/bioinformatics/btn129> and 'igraph' (Csardi
et Nepusz, 2006) <https://igraph.org/>. It also implements methods
commonly used in landscape genetics to create graphs, described by Dyer et
Nason (2004) <doi:10.1111/j.1365-294X.2004.02177.x> and Greenbaum et
Fefferman (2017) <doi:10.1111/mec.14059>, and to analyse distance data
(van Strien et al., 2015) <doi:10.1038/hdy.2014.62>.
Author: Paul Savary [aut, cre] ,
Gilles Vuidel [ctb] ,
Tyler Rudolph [ctb]
Maintainer: Paul Savary <psavary@protonmail.com>
Diff between graph4lg versions 1.2.0 dated 2021-03-16 and 1.4.0 dated 2022-03-08
DESCRIPTION | 34 MD5 | 100 +- NAMESPACE | 4 NEWS.md | 29 R/check_merge.R |only R/compute_graph_modul.R | 2 R/convert_cd.R | 14 R/genepop_to_genind.R | 91 +- R/genind_to_genepop.R | 25 R/genind_to_structure.R |only R/get_graphab.R | 6 R/get_graphab_linkset.R | 42 R/get_graphab_linkset_cost.R | 64 - R/get_graphab_metric.R | 36 R/get_graphab_raster_codes.R | 36 R/graph_plot_compar.R | 10 R/graphab_capacity.R | 807 +++++++++--------- R/graphab_corridor.R |only R/graphab_graph.R | 75 - R/graphab_link.R | 516 ++++++----- R/graphab_metric.R | 897 +++++++++++--------- R/graphab_modul.R | 59 - R/graphab_pointset.R | 724 ++++++++-------- R/graphab_project.R | 417 +++++---- R/graphab_project_desc.R | 113 ++ R/graphab_to_igraph.R | 65 - R/link_compar.R | 52 - R/mat_pw_fst.R | 250 ++--- R/plot_graph_lg.R | 16 R/pop_rare_gen_index.R |only build/partial.rdb |binary build/vignette.rds |binary inst/doc/genetic_graph_2.R | 428 ++++----- inst/doc/genetic_graph_2.html | 1416 ++++++++++++++------------------ inst/doc/graph_comparisons_4.R | 290 +++--- inst/doc/graph_comparisons_4.html | 1075 ++++++++++-------------- inst/doc/input_data_processing_1.R | 292 +++--- inst/doc/input_data_processing_1.html | 1485 +++++++++++++++------------------- inst/doc/landscape_graph_3.R | 288 +++--- inst/doc/landscape_graph_3.html | 1406 ++++++++++++++------------------ man/check_merge.Rd |only man/genind_to_structure.Rd |only man/get_graphab.Rd | 2 man/get_graphab_linkset.Rd | 4 man/get_graphab_metric.Rd | 4 man/graphab_capacity.Rd | 12 man/graphab_corridor.Rd |only man/graphab_graph.Rd | 4 man/graphab_link.Rd | 15 man/graphab_metric.Rd | 17 man/graphab_modul.Rd | 4 man/graphab_pointset.Rd | 4 man/graphab_project.Rd | 20 man/graphab_project_desc.Rd | 7 man/pop_rare_gen_index.Rd |only 55 files changed, 5430 insertions(+), 5827 deletions(-)
Title: Earth Observation Data Cubes from Satellite Image Collections
Description: Processing collections of Earth observation images as on-demand multispectral, multitemporal raster data cubes. Users
define cubes by spatiotemporal extent, resolution, and spatial reference system and let 'gdalcubes' automatically apply cropping, reprojection, and
resampling using the 'Geospatial Data Abstraction Library' ('GDAL'). Implemented functions on data cubes include reduction over space and time,
applying arithmetic expressions on pixel band values, moving window aggregates over time, filtering by space, time, bands, and predicates on pixel values,
exporting data cubes as 'netCDF' or 'GeoTIFF' files, plotting, and extraction from spatial and or spatiotemporal features.
All computational parts are implemented in C++, linking to the 'GDAL', 'netCDF', 'CURL', and 'SQLite' libraries.
See Appel and Pebesma (2019) <doi:10.3390/data4030092> for further details.
Author: Marius Appel [aut, cre] ,
Edzer Pebesma [ctb] ,
Roger Bivand [ctb],
Jeroen Ooms [ctb] ,
Lewis Van Winkle [cph],
Ole Christian Eidheim [cph],
Howard Hinnant [cph],
Adrian Colomitchi [cph],
Florian Dang [cph],
Paul Thompson [cph],
Tomasz Kamiński [cph] [...truncated...]
Maintainer: Marius Appel <marius.appel@uni-muenster.de>
Diff between gdalcubes versions 0.5.1 dated 2021-12-03 and 0.6.0 dated 2022-03-08
gdalcubes-0.5.1/gdalcubes/R/query_points.R |only gdalcubes-0.5.1/gdalcubes/R/query_timeseries.R |only gdalcubes-0.5.1/gdalcubes/R/zonal_statistics.R |only gdalcubes-0.5.1/gdalcubes/inst/doc/MODIS.R |only gdalcubes-0.5.1/gdalcubes/inst/doc/MODIS.Rmd |only gdalcubes-0.5.1/gdalcubes/inst/doc/MODIS.html |only gdalcubes-0.5.1/gdalcubes/man/query_points.Rd |only gdalcubes-0.5.1/gdalcubes/man/query_timeseries.Rd |only gdalcubes-0.5.1/gdalcubes/man/raster_cube_dummy.Rd |only gdalcubes-0.5.1/gdalcubes/man/zonal_statistics.Rd |only gdalcubes-0.5.1/gdalcubes/vignettes/MODIS.Rmd |only gdalcubes-0.6.0/gdalcubes/DESCRIPTION | 18 gdalcubes-0.6.0/gdalcubes/MD5 | 195 +- gdalcubes-0.6.0/gdalcubes/NAMESPACE | 8 gdalcubes-0.6.0/gdalcubes/NEWS.md | 19 gdalcubes-0.6.0/gdalcubes/R/RcppExports.R | 256 +-- gdalcubes-0.6.0/gdalcubes/R/aggregate_time.R | 6 gdalcubes-0.6.0/gdalcubes/R/animate.R | 134 - gdalcubes-0.6.0/gdalcubes/R/apply_pixel.R | 8 gdalcubes-0.6.0/gdalcubes/R/apply_time.R | 6 gdalcubes-0.6.0/gdalcubes/R/chunk_apply.R | 6 gdalcubes-0.6.0/gdalcubes/R/config.R | 181 +- gdalcubes-0.6.0/gdalcubes/R/crop.R | 6 gdalcubes-0.6.0/gdalcubes/R/cube.R | 140 + gdalcubes-0.6.0/gdalcubes/R/dummy.R | 58 gdalcubes-0.6.0/gdalcubes/R/extract.R |only gdalcubes-0.6.0/gdalcubes/R/fill_time.R | 4 gdalcubes-0.6.0/gdalcubes/R/filter_geom.R | 4 gdalcubes-0.6.0/gdalcubes/R/filter_pixel.R | 4 gdalcubes-0.6.0/gdalcubes/R/gdalcubes.R | 6 gdalcubes-0.6.0/gdalcubes/R/image_collection.R | 18 gdalcubes-0.6.0/gdalcubes/R/join_bands.R | 4 gdalcubes-0.6.0/gdalcubes/R/ncdf_cube.R | 4 gdalcubes-0.6.0/gdalcubes/R/plot.R | 8 gdalcubes-0.6.0/gdalcubes/R/reduce.R | 16 gdalcubes-0.6.0/gdalcubes/R/rename_bands.R | 4 gdalcubes-0.6.0/gdalcubes/R/select_bands.R | 4 gdalcubes-0.6.0/gdalcubes/R/select_time.R | 4 gdalcubes-0.6.0/gdalcubes/R/slice.R | 12 gdalcubes-0.6.0/gdalcubes/R/stac.R | 4 gdalcubes-0.6.0/gdalcubes/R/view.R | 2 gdalcubes-0.6.0/gdalcubes/R/window.R | 6 gdalcubes-0.6.0/gdalcubes/R/zzz.R | 36 gdalcubes-0.6.0/gdalcubes/build/vignette.rds |binary gdalcubes-0.6.0/gdalcubes/inst/CITATION | 13 gdalcubes-0.6.0/gdalcubes/inst/doc/gc01_MODIS.R |only gdalcubes-0.6.0/gdalcubes/inst/doc/gc01_MODIS.Rmd |only gdalcubes-0.6.0/gdalcubes/inst/doc/gc01_MODIS.html |only gdalcubes-0.6.0/gdalcubes/inst/scripts |only gdalcubes-0.6.0/gdalcubes/inst/tinytest |only gdalcubes-0.6.0/gdalcubes/man/animate.Rd | 23 gdalcubes-0.6.0/gdalcubes/man/dot-copy_cube.Rd | 2 gdalcubes-0.6.0/gdalcubes/man/extract_geom.Rd |only gdalcubes-0.6.0/gdalcubes/man/gdalcubes.Rd | 4 gdalcubes-0.6.0/gdalcubes/man/gdalcubes_options.Rd | 40 gdalcubes-0.6.0/gdalcubes/man/gdalcubes_set_gdal_config.Rd |only gdalcubes-0.6.0/gdalcubes/man/json_cube.Rd |only gdalcubes-0.6.0/gdalcubes/man/raster_cube.Rd | 11 gdalcubes-0.6.0/gdalcubes/man/write_ncdf.Rd | 2 gdalcubes-0.6.0/gdalcubes/man/write_tif.Rd | 2 gdalcubes-0.6.0/gdalcubes/src/Makevars.in | 4 gdalcubes-0.6.0/gdalcubes/src/Makevars.win | 6 gdalcubes-0.6.0/gdalcubes/src/RcppExports.cpp | 713 ++++---- gdalcubes-0.6.0/gdalcubes/src/error.cpp |only gdalcubes-0.6.0/gdalcubes/src/error.h |only gdalcubes-0.6.0/gdalcubes/src/gdalcubes.cpp | 830 ++++------ gdalcubes-0.6.0/gdalcubes/src/gdalcubes/src/apply_pixel.cpp | 2 gdalcubes-0.6.0/gdalcubes/src/gdalcubes/src/config.cpp | 32 gdalcubes-0.6.0/gdalcubes/src/gdalcubes/src/config.h | 4 gdalcubes-0.6.0/gdalcubes/src/gdalcubes/src/cube.cpp | 747 +++++---- gdalcubes-0.6.0/gdalcubes/src/gdalcubes/src/cube.h | 36 gdalcubes-0.6.0/gdalcubes/src/gdalcubes/src/cube_factory.cpp | 21 gdalcubes-0.6.0/gdalcubes/src/gdalcubes/src/datetime.cpp | 68 gdalcubes-0.6.0/gdalcubes/src/gdalcubes/src/datetime.h | 12 gdalcubes-0.6.0/gdalcubes/src/gdalcubes/src/dummy.cpp | 15 gdalcubes-0.6.0/gdalcubes/src/gdalcubes/src/dummy.h | 67 gdalcubes-0.6.0/gdalcubes/src/gdalcubes/src/external/tiny-process-library/LICENSE | 2 gdalcubes-0.6.0/gdalcubes/src/gdalcubes/src/external/tiny-process-library/process.cpp | 100 - gdalcubes-0.6.0/gdalcubes/src/gdalcubes/src/external/tiny-process-library/process.hpp | 55 gdalcubes-0.6.0/gdalcubes/src/gdalcubes/src/external/tiny-process-library/process_unix.cpp | 677 ++++---- gdalcubes-0.6.0/gdalcubes/src/gdalcubes/src/external/tiny-process-library/process_win.cpp | 612 +++---- gdalcubes-0.6.0/gdalcubes/src/gdalcubes/src/extract_geom.cpp |only gdalcubes-0.6.0/gdalcubes/src/gdalcubes/src/extract_geom.h |only gdalcubes-0.6.0/gdalcubes/src/gdalcubes/src/filesystem.cpp | 8 gdalcubes-0.6.0/gdalcubes/src/gdalcubes/src/filesystem.h | 2 gdalcubes-0.6.0/gdalcubes/src/gdalcubes/src/filter_geom.cpp | 45 gdalcubes-0.6.0/gdalcubes/src/gdalcubes/src/filter_pixel.cpp | 6 gdalcubes-0.6.0/gdalcubes/src/gdalcubes/src/gdalcubes.h | 1 gdalcubes-0.6.0/gdalcubes/src/gdalcubes/src/image_collection.cpp | 67 gdalcubes-0.6.0/gdalcubes/src/gdalcubes/src/image_collection_cube.cpp | 97 - gdalcubes-0.6.0/gdalcubes/src/gdalcubes/src/ncdf_cube.cpp | 4 gdalcubes-0.6.0/gdalcubes/src/gdalcubes/src/reduce_space.cpp | 43 gdalcubes-0.6.0/gdalcubes/src/gdalcubes/src/reduce_time.cpp | 44 gdalcubes-0.6.0/gdalcubes/src/gdalcubes/src/select_bands.cpp | 5 gdalcubes-0.6.0/gdalcubes/src/gdalcubes/src/stream.cpp | 121 - gdalcubes-0.6.0/gdalcubes/src/gdalcubes/src/stream.h | 17 gdalcubes-0.6.0/gdalcubes/src/gdalcubes/src/stream_apply_pixel.cpp | 39 gdalcubes-0.6.0/gdalcubes/src/gdalcubes/src/stream_apply_time.cpp | 87 - gdalcubes-0.6.0/gdalcubes/src/gdalcubes/src/stream_reduce_space.cpp | 90 - gdalcubes-0.6.0/gdalcubes/src/gdalcubes/src/stream_reduce_time.cpp | 88 - gdalcubes-0.6.0/gdalcubes/src/gdalcubes/src/utils.cpp | 48 gdalcubes-0.6.0/gdalcubes/src/gdalcubes/src/utils.h | 32 gdalcubes-0.6.0/gdalcubes/src/gdalcubes/src/warp.cpp | 2 gdalcubes-0.6.0/gdalcubes/src/gdalcubes/src/window_time.cpp | 28 gdalcubes-0.6.0/gdalcubes/src/multiprocess.cpp |only gdalcubes-0.6.0/gdalcubes/src/multiprocess.h |only gdalcubes-0.6.0/gdalcubes/tests |only gdalcubes-0.6.0/gdalcubes/vignettes/gc01_MODIS.Rmd |only 108 files changed, 3531 insertions(+), 2624 deletions(-)
Title: Interface to the API 'Sede Electronica Del Catastro'
Description: Access public spatial data available under the 'INSPIRE'
directive. Tools for downloading references and addresses of
properties, as well as map images.
Author: Ángel Delgado Panadero [aut, cph]
,
Iñaki Ucar [ctb] ,
Diego Hernangómez [aut, cre]
Maintainer: Diego Hernangómez <diego.hernangomezherrero@gmail.com>
Diff between CatastRo versions 0.2.0 dated 2022-02-28 and 0.2.1 dated 2022-03-08
CatastRo-0.2.0/CatastRo/man/figures/README-unnamed-chunk-6-1.png |only CatastRo-0.2.0/CatastRo/man/figures/README-unnamed-chunk-7-1.png |only CatastRo-0.2.0/CatastRo/man/figures/README-unnamed-chunk-8-1.png |only CatastRo-0.2.1/CatastRo/DESCRIPTION | 6 CatastRo-0.2.1/CatastRo/MD5 | 77 +++++----- CatastRo-0.2.1/CatastRo/NEWS.md |only CatastRo-0.2.1/CatastRo/R/ovc_cpmrc.R | 4 CatastRo-0.2.1/CatastRo/R/ovc_rccoor.R | 4 CatastRo-0.2.1/CatastRo/R/ovc_rccoor_distancia.R | 4 CatastRo-0.2.1/CatastRo/R/search_coords.R | 2 CatastRo-0.2.1/CatastRo/R/utils_wfs.R | 6 CatastRo-0.2.1/CatastRo/README.md | 29 ++- CatastRo-0.2.1/CatastRo/data/catr_srs_values.rda |binary CatastRo-0.2.1/CatastRo/inst/WORDLIST | 1 CatastRo-0.2.1/CatastRo/inst/doc/CatastRo.Rmd | 15 + CatastRo-0.2.1/CatastRo/inst/doc/CatastRo.html | 20 +- CatastRo-0.2.1/CatastRo/inst/doc/ovcservice.html | 1 CatastRo-0.2.1/CatastRo/man/catr_get_code_from_coords.Rd | 2 CatastRo-0.2.1/CatastRo/man/figures/README-atom-1.png |only CatastRo-0.2.1/CatastRo/man/figures/README-wfs-1.png |only CatastRo-0.2.1/CatastRo/man/figures/README-wms-1.png |only CatastRo-0.2.1/CatastRo/man/figures/logo.png |binary CatastRo-0.2.1/CatastRo/tests/testthat/test-catr_atom_ad.R | 6 CatastRo-0.2.1/CatastRo/tests/testthat/test-catr_atom_ad_db.R | 1 CatastRo-0.2.1/CatastRo/tests/testthat/test-catr_atom_bu.R | 5 CatastRo-0.2.1/CatastRo/tests/testthat/test-catr_atom_bu_db.R | 2 CatastRo-0.2.1/CatastRo/tests/testthat/test-catr_atom_cp.R | 5 CatastRo-0.2.1/CatastRo/tests/testthat/test-catr_atom_cp_db.R | 2 CatastRo-0.2.1/CatastRo/tests/testthat/test-catr_atom_search_munic.R | 1 CatastRo-0.2.1/CatastRo/tests/testthat/test-catr_cache_dir.R | 2 CatastRo-0.2.1/CatastRo/tests/testthat/test-catr_get_code_from_coords.R | 1 CatastRo-0.2.1/CatastRo/tests/testthat/test-catr_ovc_cpmrc.R | 4 CatastRo-0.2.1/CatastRo/tests/testthat/test-catr_ovc_rccoor.R | 3 CatastRo-0.2.1/CatastRo/tests/testthat/test-catr_ovc_rccoor_distancia.R | 3 CatastRo-0.2.1/CatastRo/tests/testthat/test-catr_ovccallejero.R | 2 CatastRo-0.2.1/CatastRo/tests/testthat/test-catr_wfs_at.R | 9 + CatastRo-0.2.1/CatastRo/tests/testthat/test-catr_wfs_bu.R | 9 + CatastRo-0.2.1/CatastRo/tests/testthat/test-catr_wfs_cp.R | 16 +- CatastRo-0.2.1/CatastRo/tests/testthat/test-catr_wms.R | 2 CatastRo-0.2.1/CatastRo/vignettes/CatastRo.Rmd | 15 + CatastRo-0.2.1/CatastRo/vignettes/dataviz-1.png |binary CatastRo-0.2.1/CatastRo/vignettes/minimal-1.png |binary CatastRo-0.2.1/CatastRo/vignettes/santbernabeu-1.png |binary 43 files changed, 168 insertions(+), 91 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-09-02 0.1.2
2021-03-05 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-02-22 0.2.2
2021-09-02 0.2.1
2021-06-15 0.2.0
2021-02-23 0.1.2