Tue, 08 Mar 2022

Package MicroMoB updated to version 0.0.11 with previous version 0.0.9 dated 2022-02-01

Title: Discrete Time Simulation of Mosquito-Borne Pathogen Transmission
Description: Provides a framework based on S3 dispatch for constructing models of mosquito-borne pathogen transmission which are constructed from submodels of various components (i.e. immature and adult mosquitoes, human populations). A consistent mathematical expression for the distribution of bites on hosts means that different models (stochastic, deterministic, etc.) can be coherently incorporated and updated over a discrete time step.
Author: Sean L. Wu [aut, cre] , David L. Smith [aut] , Sophie Libkind [ctb]
Maintainer: Sean L. Wu <slwood89@gmail.com>

Diff between MicroMoB versions 0.0.9 dated 2022-02-01 and 0.0.11 dated 2022-03-08

 MicroMoB-0.0.11/MicroMoB/DESCRIPTION                                  |   12 
 MicroMoB-0.0.11/MicroMoB/MD5                                          |  141 ++++++----
 MicroMoB-0.0.11/MicroMoB/NAMESPACE                                    |   30 ++
 MicroMoB-0.0.11/MicroMoB/NEWS.md                                      |   20 +
 MicroMoB-0.0.11/MicroMoB/R/MicroMoB.R                                 |    5 
 MicroMoB-0.0.11/MicroMoB/R/ModelObject.R                              |    9 
 MicroMoB-0.0.11/MicroMoB/R/api_mosquito.R                             |only
 MicroMoB-0.0.11/MicroMoB/R/aquatic_BH.R                               |   90 +++++-
 MicroMoB-0.0.11/MicroMoB/R/aquatic_interface.R                        |   12 
 MicroMoB-0.0.11/MicroMoB/R/aquatic_trace.R                            |   55 +++
 MicroMoB-0.0.11/MicroMoB/R/humans_MOI.R                               |   76 +++++
 MicroMoB-0.0.11/MicroMoB/R/humans_SIR.R                               |   65 ++++
 MicroMoB-0.0.11/MicroMoB/R/humans_SIS.R                               |   63 ++++
 MicroMoB-0.0.11/MicroMoB/R/mosquito_BQ.R                              |only
 MicroMoB-0.0.11/MicroMoB/R/mosquito_RM.R                              |   95 ++++++
 MicroMoB-0.0.11/MicroMoB/R/mosquito_interface.R                       |   12 
 MicroMoB-0.0.11/MicroMoB/R/mosquito_trace.R                           |   38 ++
 MicroMoB-0.0.11/MicroMoB/R/other_trace.R                              |   28 +
 MicroMoB-0.0.11/MicroMoB/R/utils.R                                    |    5 
 MicroMoB-0.0.11/MicroMoB/R/utils_internal.R                           |    2 
 MicroMoB-0.0.11/MicroMoB/R/visitor_trace.R                            |   33 ++
 MicroMoB-0.0.11/MicroMoB/README.md                                    |   15 -
 MicroMoB-0.0.11/MicroMoB/build/vignette.rds                           |binary
 MicroMoB-0.0.11/MicroMoB/inst/doc/Advanced.R                          |only
 MicroMoB-0.0.11/MicroMoB/inst/doc/Advanced.Rmd                        |only
 MicroMoB-0.0.11/MicroMoB/inst/doc/Advanced.html                       |only
 MicroMoB-0.0.11/MicroMoB/inst/doc/BH_aqua.html                        |    2 
 MicroMoB-0.0.11/MicroMoB/inst/doc/BQ_mosquito.R                       |only
 MicroMoB-0.0.11/MicroMoB/inst/doc/BQ_mosquito.Rmd                     |only
 MicroMoB-0.0.11/MicroMoB/inst/doc/BQ_mosquito.html                    |only
 MicroMoB-0.0.11/MicroMoB/inst/doc/MOI_human.html                      |    6 
 MicroMoB-0.0.11/MicroMoB/inst/doc/MicroMoB.Rmd                        |   27 -
 MicroMoB-0.0.11/MicroMoB/inst/doc/MicroMoB.html                       |   11 
 MicroMoB-0.0.11/MicroMoB/inst/doc/RM_mosquito.html                    |    2 
 MicroMoB-0.0.11/MicroMoB/inst/doc/RM_transmission.html                |    2 
 MicroMoB-0.0.11/MicroMoB/inst/extdata                                 |only
 MicroMoB-0.0.11/MicroMoB/inst/plumber                                 |only
 MicroMoB-0.0.11/MicroMoB/man/compute_Z.BQ.Rd                          |only
 MicroMoB-0.0.11/MicroMoB/man/compute_Z.Rd                             |    2 
 MicroMoB-0.0.11/MicroMoB/man/compute_emergents.BH.Rd                  |    2 
 MicroMoB-0.0.11/MicroMoB/man/compute_emergents.trace_deterministic.Rd |    2 
 MicroMoB-0.0.11/MicroMoB/man/compute_emergents.trace_stochastic.Rd    |    2 
 MicroMoB-0.0.11/MicroMoB/man/compute_f.BQ.Rd                          |only
 MicroMoB-0.0.11/MicroMoB/man/compute_oviposit.BQ.Rd                   |only
 MicroMoB-0.0.11/MicroMoB/man/compute_oviposit.BQ_deterministic.Rd     |only
 MicroMoB-0.0.11/MicroMoB/man/compute_oviposit.BQ_stochastic.Rd        |only
 MicroMoB-0.0.11/MicroMoB/man/compute_q.BQ.Rd                          |only
 MicroMoB-0.0.11/MicroMoB/man/distribute.Rd                            |    2 
 MicroMoB-0.0.11/MicroMoB/man/get_config_alternative_trace.Rd          |only
 MicroMoB-0.0.11/MicroMoB/man/get_config_aqua_BH.Rd                    |only
 MicroMoB-0.0.11/MicroMoB/man/get_config_aqua_trace.Rd                 |only
 MicroMoB-0.0.11/MicroMoB/man/get_config_humans_MOI.Rd                 |only
 MicroMoB-0.0.11/MicroMoB/man/get_config_humans_SIR.Rd                 |only
 MicroMoB-0.0.11/MicroMoB/man/get_config_humans_SIS.Rd                 |only
 MicroMoB-0.0.11/MicroMoB/man/get_config_mosquito_RM.Rd                |only
 MicroMoB-0.0.11/MicroMoB/man/get_config_mosquito_trace.Rd             |only
 MicroMoB-0.0.11/MicroMoB/man/get_config_visitor_trace.Rd              |only
 MicroMoB-0.0.11/MicroMoB/man/make_MicroMoB.Rd                         |    4 
 MicroMoB-0.0.11/MicroMoB/man/output_aqua.BH.Rd                        |only
 MicroMoB-0.0.11/MicroMoB/man/output_aqua.Rd                           |only
 MicroMoB-0.0.11/MicroMoB/man/output_aqua.trace.Rd                     |only
 MicroMoB-0.0.11/MicroMoB/man/output_mosquitoes.RM.Rd                  |only
 MicroMoB-0.0.11/MicroMoB/man/output_mosquitoes.Rd                     |only
 MicroMoB-0.0.11/MicroMoB/man/output_mosquitoes.trace.Rd               |only
 MicroMoB-0.0.11/MicroMoB/man/setup_aqua_BH.Rd                         |    4 
 MicroMoB-0.0.11/MicroMoB/man/setup_humans_MOI.Rd                      |    6 
 MicroMoB-0.0.11/MicroMoB/man/setup_mosquito_BQ.Rd                     |only
 MicroMoB-0.0.11/MicroMoB/man/setup_mosquito_RM.Rd                     |    4 
 MicroMoB-0.0.11/MicroMoB/man/step_aqua.trace.Rd                       |    2 
 MicroMoB-0.0.11/MicroMoB/man/step_mosquitoes.BQ.Rd                    |only
 MicroMoB-0.0.11/MicroMoB/man/step_mosquitoes.BQ_deterministic.Rd      |only
 MicroMoB-0.0.11/MicroMoB/man/step_mosquitoes.BQ_stochastic.Rd         |only
 MicroMoB-0.0.11/MicroMoB/tests/testthat/test-ModelObject.R            |    1 
 MicroMoB-0.0.11/MicroMoB/tests/testthat/test-api_mosquitoes_plumber.R |only
 MicroMoB-0.0.11/MicroMoB/tests/testthat/test-aquatic_BH.R             |   69 ++++
 MicroMoB-0.0.11/MicroMoB/tests/testthat/test-aquatic_trace.R          |   89 ++++++
 MicroMoB-0.0.11/MicroMoB/tests/testthat/test-humans_MOI.R             |   90 ++++++
 MicroMoB-0.0.11/MicroMoB/tests/testthat/test-humans_SIR.R             |   83 +++++
 MicroMoB-0.0.11/MicroMoB/tests/testthat/test-humans_SIS.R             |   82 +++++
 MicroMoB-0.0.11/MicroMoB/tests/testthat/test-mosquito_BQ.R            |only
 MicroMoB-0.0.11/MicroMoB/tests/testthat/test-mosquito_RM.R            |  105 +++++++
 MicroMoB-0.0.11/MicroMoB/tests/testthat/test-mosquito_trace.R         |   45 +++
 MicroMoB-0.0.11/MicroMoB/tests/testthat/test-other_trace.R            |only
 MicroMoB-0.0.11/MicroMoB/tests/testthat/test-visitor_trace.R          |   44 +++
 MicroMoB-0.0.11/MicroMoB/vignettes/Advanced.Rmd                       |only
 MicroMoB-0.0.11/MicroMoB/vignettes/BQ_mosquito.Rmd                    |only
 MicroMoB-0.0.11/MicroMoB/vignettes/MicroMoB.Rmd                       |   27 -
 MicroMoB-0.0.9/MicroMoB/tests/testthat/test-althost_trace.R           |only
 88 files changed, 1341 insertions(+), 180 deletions(-)

More information about MicroMoB at CRAN
Permanent link

Package csppData updated to version 0.2.51 with previous version 0.2.5 dated 2022-03-08

Title: Data Only: The Correlates of State Policy Project Dataset
Description: Contains the Correlates of State Policy Project dataset (+ codebook) assembled by Marty P. Jordan and Matt Grossmann (2020) <http://ippsr.msu.edu/public-policy/correlates-state-policy> used by the 'cspp' package. The Correlates data contains over 3000 variables across more than 100 years that pertain to state politics and policy in the United States.
Author: Caleb Lucas and Joshua McCrain
Maintainer: Caleb Lucas <calebjlucas@gmail.com>

Diff between csppData versions 0.2.5 dated 2022-03-08 and 0.2.51 dated 2022-03-08

 DESCRIPTION         |    6 +++---
 MD5                 |    6 +++---
 data/codebook.rda   |binary
 data/correlates.rda |binary
 4 files changed, 6 insertions(+), 6 deletions(-)

More information about csppData at CRAN
Permanent link

Package casabourse updated to version 1.2.0 with previous version 1.1.0 dated 2022-02-18

Title: Casablanca Stock Exchange Data
Description: It provides real-time data from the Casablanca Stock Exchange. The objective is to facilitate access to data for all users of the R programming language. It includes a variety of data accessible just by function call.
Author: Abdoul Oudouss Diakité [aut, cre]
Maintainer: Abdoul Oudouss Diakité <abdouloudoussdiakite@gmail.com>

Diff between casabourse versions 1.1.0 dated 2022-02-18 and 1.2.0 dated 2022-03-08

 DESCRIPTION                              |    8 
 MD5                                      |   14 
 NEWS.md                                  |    9 
 R/daily.data.R                           |    9 
 R/get_info.R                             |    8 
 R/masi.data.R                            |    1 
 inst/doc/Introduction_to_casabourse.html | 2579 +++++++++++++++----------------
 man/get_info.Rd                          |    3 
 8 files changed, 1306 insertions(+), 1325 deletions(-)

More information about casabourse at CRAN
Permanent link

Package calmate updated to version 0.13.0 with previous version 0.12.1 dated 2015-10-27

Title: Improved Allele-Specific Copy Number of SNP Microarrays for Downstream Segmentation
Description: The CalMaTe method calibrates preprocessed allele-specific copy number estimates (ASCNs) from DNA microarrays by controlling for single-nucleotide polymorphism-specific allelic crosstalk. The resulting ASCNs are on average more accurate, which increases the power of segmentation methods for detecting changes between copy number states in tumor studies including copy neutral loss of heterozygosity. CalMaTe applies to any ASCNs regardless of preprocessing method and microarray technology, e.g. Affymetrix and Illumina.
Author: Maria Ortiz [aut, ctb], Ander Aramburu [ctb], Henrik Bengtsson [aut, cre, cph], Pierre Neuvial [aut, ctb], Angel Rubio [aut, ctb]
Maintainer: Henrik Bengtsson <henrikb@braju.com>

Diff between calmate versions 0.12.1 dated 2015-10-27 and 0.13.0 dated 2022-03-08

 .aspell                                                        |only
 DESCRIPTION                                                    |   15 
 MD5                                                            |   64 
 NAMESPACE                                                      |    3 
 NEWS                                                           |  764 ++++++----
 R/000.R                                                        |   14 
 R/CalMaTeCalibration.R                                         |  124 -
 R/calmateByThetaAB.R                                           |  573 +++----
 R/calmateByTotalAndFracB.R                                     |  436 ++---
 R/fitCalMaTe.R                                                 |  148 -
 R/fitCalMaTeCNprobes.R                                         |  106 -
 R/fitCalMaTeInternal.R                                         |  172 +-
 R/fitCalMaTeMedians.R                                          |  264 +--
 R/fitCalMaTeV1.R                                               |  198 +-
 R/fitCalMaTeV2.R                                               |  340 ++--
 R/thetaAB2TotalAndFracB.R                                      |  244 +--
 R/truncateFracB.R                                              |   94 -
 R/truncateThetaAB.R                                            |  186 +-
 R/utils.R                                                      |only
 README.md                                                      |only
 inst/CITATION                                                  |only
 inst/WORDLIST                                                  |only
 inst/testScripts/publications/CalMaTe/Z01.plots,byChromosome.R |    8 
 inst/testScripts/publications/CalMaTe/Z02.plots,segments.R     |   12 
 inst/testScripts/publications/CalMaTe/Z03.plots,byUnits.R      |    4 
 inst/testScripts/widgets/CalMaTe/Z02.plots,segments.R          |   18 
 man/CalMaTeCalibration.Rd                                      |  138 -
 man/calmate-package.Rd                                         |    2 
 man/calmateByThetaAB.array.Rd                                  |  110 -
 man/calmateByTotalAndFracB.array.Rd                            |   82 -
 man/fitCalMaTeInternal.Rd                                      |    2 
 tests/calmateByThetaAB.R                                       |  190 +-
 tests/calmateByTotalAndFracB.R                                 |   60 
 tests/fitCalMaTe.R                                             |only
 tests/fitCalMaTeMedians.R                                      |only
 tests/testScriptCalMaTe1.R                                     |  108 -
 tests/thetaAB2TotalAndFracB.R                                  |   22 
 37 files changed, 2447 insertions(+), 2054 deletions(-)

More information about calmate at CRAN
Permanent link

New package saeHB.hnb with initial version 0.1.0
Package: saeHB.hnb
Title: Small Area Estimation under Hurdle Negative Binomial Distribution using Hierarchical Bayesian Method
Version: 0.1.0
Author: Raka Ikmana [aut, cre], Azka Ubaidillah [aut]
Maintainer: Raka Ikmana <221810548@stis.ac.id>
Description: We design this package to provide a function for area level of small area estimation using Hierarchical Bayesian (HB) method under Hurdle Negative Binomial Distribution. This package provides model using Univariate Hurdle Negative Binomial Distribution for variable of interest. This package also provides a dataset produced by a data generation. The 'rjags' package is employed to obtain parameter estimates. Model-based estimators involves the Hierarchical Bayes estimators which include the mean and the variation of mean. For references, see Hilbe (2011) <doi:10.1017/CBO9780511973420> and Rao (2015) <doi:10.1002/9781118735855>.
License: GPL-3
Encoding: UTF-8
LazyData: true
URL: https://github.com/rakaikmana/saeHB.hnb
BugReports: https://github.com/rakaikmana/saeHB.hnb/issues
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
Imports: stringr, coda, rjags, stats, grDevices, graphics
SystemRequirements: JAGS (http://mcmc-jags.sourceforge.net)
Depends: R (>= 2.10)
NeedsCompilation: no
Packaged: 2022-03-04 13:21:24 UTC; HP
Repository: CRAN
Date/Publication: 2022-03-08 21:10:02 UTC

More information about saeHB.hnb at CRAN
Permanent link

Package TidyDensity updated to version 1.0.0 with previous version 0.0.1 dated 2022-01-21

Title: Functions for Tidy Analysis and Generation of Random Data
Description: To make it easy to generate random numbers based upon the underlying stats distribution functions. All data is returned in a tidy and structured format making working with the data simple and straight forward. Given that the data is returned in a tidy 'tibble' it lends itself to working with the rest of the 'tidyverse'.
Author: Steven Sanderson [aut, cre], Steven Sanderson [cph]
Maintainer: Steven Sanderson <spsanderson@gmail.com>

Diff between TidyDensity versions 0.0.1 dated 2022-01-21 and 1.0.0 dated 2022-03-08

 DESCRIPTION                                         |   12 
 MD5                                                 |  178 ++++++--
 NAMESPACE                                           |   41 +
 NEWS.md                                             |   74 +++
 R/00_global_variables.R                             |    8 
 R/autoplot-combined-dist.R                          |only
 R/autoplot-density.R                                |  414 ++++++++++++--------
 R/autoplot-multi-dist.R                             |only
 R/autoplot-randomwalk.R                             |only
 R/combine-multi-single-dist-tbl.R                   |only
 R/combine-tidy-distributions-tbl.R                  |only
 R/empirical-tidy.R                                  |  104 +++--
 R/est-param-beta.R                                  |only
 R/est-param-binomial.R                              |only
 R/est-param-exponential.R                           |only
 R/est-param-gamma.R                                 |only
 R/est-param-geometric.R                             |only
 R/est-param-hypergeometric.R                        |only
 R/est-param-logistic.R                              |only
 R/est-param-negative-binomial.R                     |only
 R/est-param-normal.R                                |only
 R/est-param-pareto.R                                |only
 R/est-param-poisson.R                               |only
 R/est_param-lognormal.R                             |only
 R/random-tidy-beta.R                                |  130 +++---
 R/random-tidy-binomial.R                            |only
 R/random-tidy-burr-inverse.R                        |only
 R/random-tidy-burr.R                                |only
 R/random-tidy-cauchy.R                              |  136 +++---
 R/random-tidy-chisquare.R                           |  136 +++---
 R/random-tidy-exponential-inverse.R                 |only
 R/random-tidy-exponential.R                         |  124 +++--
 R/random-tidy-f.R                                   |  128 +++---
 R/random-tidy-gamma-inverse.R                       |only
 R/random-tidy-gamma.R                               |  134 +++---
 R/random-tidy-general-beta.R                        |only
 R/random-tidy-general-pareto.R                      |only
 R/random-tidy-geom.R                                |only
 R/random-tidy-hypergeometric.R                      |  130 +++---
 R/random-tidy-logistic.R                            |  128 +++---
 R/random-tidy-lognormal.R                           |  136 +++---
 R/random-tidy-negative-binomial.R                   |only
 R/random-tidy-normal-inverse.R                      |only
 R/random-tidy-normal.R                              |  134 +++---
 R/random-tidy-paralogistic.R                        |only
 R/random-tidy-pareto-inverse.R                      |only
 R/random-tidy-pareto-single-param.R                 |only
 R/random-tidy-pareto.R                              |only
 R/random-tidy-poisson.R                             |  120 +++--
 R/random-tidy-uniform.R                             |  124 +++--
 R/random-tidy-weibull-inverse.R                     |only
 R/random-tidy-weibull.R                             |  140 +++---
 R/random-tidy-zero-truc-poisson.R                   |only
 R/random-tidy-zero-trunc-geometric.R                |only
 R/random-tidy-zero-truncated-binomial.R             |only
 R/random-zero-trunc-negative-binomial.R             |only
 R/tidy-random-walk.R                                |only
 R/tidy_distribution_summary_tbl.R                   |   65 +--
 R/vec-kurtosis.R                                    |only
 R/vec-range.R                                       |only
 R/vec-scale-zero-one.R                              |only
 R/vec-skewness.R                                    |only
 R/zzz.R                                             |   54 --
 README.md                                           |   39 +
 build/vignette.rds                                  |binary
 inst/doc/getting-started.html                       |  243 ++++++++++-
 man/figures/README-more_than_nine_simulations-1.png |binary
 man/figures/README-more_than_nine_simulations-2.png |binary
 man/figures/README-more_than_nine_simulations-3.png |binary
 man/figures/README-more_than_nine_simulations-4.png |binary
 man/figures/README-plot_density-1.png               |binary
 man/figures/README-plot_density-2.png               |binary
 man/figures/README-plot_density-3.png               |binary
 man/figures/README-plot_density-4.png               |binary
 man/tidy_autoplot.Rd                                |   40 +
 man/tidy_beta.Rd                                    |   30 +
 man/tidy_binomial.Rd                                |only
 man/tidy_burr.Rd                                    |only
 man/tidy_cauchy.Rd                                  |   26 -
 man/tidy_chisquare.Rd                               |   26 -
 man/tidy_combine_distributions.Rd                   |only
 man/tidy_combined_autoplot.Rd                       |only
 man/tidy_distribution_summary_tbl.Rd                |   15 
 man/tidy_empirical.Rd                               |    1 
 man/tidy_exponential.Rd                             |   30 +
 man/tidy_f.Rd                                       |   24 -
 man/tidy_gamma.Rd                                   |   30 +
 man/tidy_generalized_beta.Rd                        |only
 man/tidy_generalized_pareto.Rd                      |only
 man/tidy_geometric.Rd                               |only
 man/tidy_hypergeometric.Rd                          |   27 -
 man/tidy_inverse_burr.Rd                            |only
 man/tidy_inverse_exponential.Rd                     |only
 man/tidy_inverse_gamma.Rd                           |only
 man/tidy_inverse_normal.Rd                          |only
 man/tidy_inverse_pareto.Rd                          |only
 man/tidy_inverse_weibull.Rd                         |only
 man/tidy_kurtosis_vec.Rd                            |only
 man/tidy_logistic.Rd                                |   30 +
 man/tidy_lognormal.Rd                               |   29 +
 man/tidy_multi_dist_autoplot.Rd                     |only
 man/tidy_multi_single_dist.Rd                       |only
 man/tidy_negative_binomial.Rd                       |only
 man/tidy_normal.Rd                                  |   30 +
 man/tidy_paralogistic.Rd                            |only
 man/tidy_pareto.Rd                                  |only
 man/tidy_pareto1.Rd                                 |only
 man/tidy_poisson.Rd                                 |   28 -
 man/tidy_random_walk.Rd                             |only
 man/tidy_random_walk_autoplot.Rd                    |only
 man/tidy_range_statistic.Rd                         |only
 man/tidy_scale_zero_one_vec.Rd                      |only
 man/tidy_skewness_vec.Rd                            |only
 man/tidy_uniform.Rd                                 |   26 -
 man/tidy_weibull.Rd                                 |   33 +
 man/tidy_zero_truncated_binomial.Rd                 |only
 man/tidy_zero_truncated_geometric.Rd                |only
 man/tidy_zero_truncated_negative_binomial.Rd        |only
 man/tidy_zero_truncated_poisson.Rd                  |only
 man/util_beta_param_estimate.Rd                     |only
 man/util_binomial_param_estimate.Rd                 |only
 man/util_exponential_param_estimate.Rd              |only
 man/util_gamma_param_estimate.Rd                    |only
 man/util_geometric_param_estimate.Rd                |only
 man/util_hypergeometric_param_estimate.Rd           |only
 man/util_logistic_param_estimate.Rd                 |only
 man/util_lognormal_param_estimate.Rd                |only
 man/util_negative_binomial_param_estimate.Rd        |only
 man/util_normal_param_estimate.Rd                   |only
 man/util_pareto_param_estimate.Rd                   |only
 man/util_poisson_param_estimate.Rd                  |only
 131 files changed, 2138 insertions(+), 1219 deletions(-)

More information about TidyDensity at CRAN
Permanent link

New package tgver with initial version 0.2.0
Package: tgver
Title: Turing Geovisualization Engine R package
Version: 0.2.0
Maintainer: Layik Hama <l.hama@leeds.ac.uk>
Description: Turing Geovisualization Engine R package for geospatial visualization and analysis.
Language: EN-GB
License: MIT + file LICENSE
URL: https://github.com/tgve/tgver
BugReports: https://github.com/tgve/tgver/issues
Encoding: UTF-8
LazyData: true
Imports: plumber, callr, geojsonsf
Suggests: igraph, covr, curl, devtools, knitr, rmarkdown, testthat (>= 3.0.0), edgebundle, ggplot2, maps, sf, ggraph
VignetteBuilder: knitr
Depends: R (>= 2.10)
NeedsCompilation: no
Packaged: 2022-03-04 09:46:15 UTC; layik
Author: Layik Hama [aut, cre] , Lydia France [aut], Nick Barlow [aut], Roly Perera [aut], Roger Beecham [aut] , Nik Lomax [aut]
Repository: CRAN
Date/Publication: 2022-03-08 20:50:02 UTC

More information about tgver at CRAN
Permanent link

New package SSVS with initial version 1.0.0
Package: SSVS
Title: Functions for Stochastic Search Variable Selection (SSVS)
Version: 1.0.0
Description: Functions for performing stochastic search variable selection (SSVS) for binary and continuous outcomes and visualizing the results. SSVS is a Bayesian variable selection method used to estimate the probability that individual predictors should be included in a regression model. Using MCMC estimation, the method samples thousands of regression models in order to characterize the model uncertainty regarding both the predictor set and the regression parameters.
URL: https://github.com/sabainter/SSVS
BugReports: https://github.com/sabainter/SSVS/issues
Depends: R (>= 2.10)
Imports: bayestestR, BoomSpikeSlab, checkmate, ggplot2, graphics, rlang, stats
Suggests: AER, testthat (>= 3.0.0), knitr, rmarkdown
License: GPL-3
Encoding: UTF-8
LazyData: true
NeedsCompilation: no
Packaged: 2022-03-03 17:28:57 UTC; Dean-X1C
Author: Sierra Bainter [cre, aut], Thomas McCauley [aut], Mahmoud Fahmy [aut], Dean Attali [aut]
Maintainer: Sierra Bainter <sbainter@miami.edu>
Repository: CRAN
Date/Publication: 2022-03-08 20:20:12 UTC

More information about SSVS at CRAN
Permanent link

Package RcppRedis updated to version 0.2.0 with previous version 0.1.11 dated 2021-06-26

Title: 'Rcpp' Bindings for 'Redis' using the 'hiredis' Library
Description: Connection to the 'Redis' key/value store using the C-language client library 'hiredis' (included as a fallback) with 'MsgPack' encoding provided via 'RcppMsgPack' headers. It now also includes the pub/sub functions from the 'rredis' package.
Author: Dirk Eddelbuettel and Bryan W. Lewis
Maintainer: Dirk Eddelbuettel <edd@debian.org>

Diff between RcppRedis versions 0.1.11 dated 2021-06-26 and 0.2.0 dated 2022-03-08

 RcppRedis-0.1.11/RcppRedis/src/hiredis/Makefile        |only
 RcppRedis-0.2.0/RcppRedis/ChangeLog                    |  157 +++++
 RcppRedis-0.2.0/RcppRedis/DESCRIPTION                  |   19 
 RcppRedis-0.2.0/RcppRedis/MD5                          |   77 +-
 RcppRedis-0.2.0/RcppRedis/R/pubsub.R                   |only
 RcppRedis-0.2.0/RcppRedis/README.md                    |    7 
 RcppRedis-0.2.0/RcppRedis/build                        |only
 RcppRedis-0.2.0/RcppRedis/cleanup                      |   14 
 RcppRedis-0.2.0/RcppRedis/configure                    |   40 -
 RcppRedis-0.2.0/RcppRedis/configure.ac                 |   17 
 RcppRedis-0.2.0/RcppRedis/inst/NEWS.Rd                 |   26 
 RcppRedis-0.2.0/RcppRedis/inst/doc                     |only
 RcppRedis-0.2.0/RcppRedis/inst/examples/readPython.py  |    8 
 RcppRedis-0.2.0/RcppRedis/inst/examples/writePython.py |   13 
 RcppRedis-0.2.0/RcppRedis/inst/pubsub                  |only
 RcppRedis-0.2.0/RcppRedis/inst/tinytest/test_basics.R  |    2 
 RcppRedis-0.2.0/RcppRedis/man/redisMonitorChannels.Rd  |only
 RcppRedis-0.2.0/RcppRedis/src/Makevars.in              |    3 
 RcppRedis-0.2.0/RcppRedis/src/Makevars.ucrt            |    8 
 RcppRedis-0.2.0/RcppRedis/src/Redis.cpp                |  100 +++
 RcppRedis-0.2.0/RcppRedis/src/hiredis/GNUmakefile      |only
 RcppRedis-0.2.0/RcppRedis/src/hiredis/alloc.c          |only
 RcppRedis-0.2.0/RcppRedis/src/hiredis/alloc.h          |only
 RcppRedis-0.2.0/RcppRedis/src/hiredis/async.c          |  341 ++++++++---
 RcppRedis-0.2.0/RcppRedis/src/hiredis/async.h          |   13 
 RcppRedis-0.2.0/RcppRedis/src/hiredis/async_private.h  |only
 RcppRedis-0.2.0/RcppRedis/src/hiredis/dict.c           |   36 -
 RcppRedis-0.2.0/RcppRedis/src/hiredis/hiredis.c        |  490 +++++++++++------
 RcppRedis-0.2.0/RcppRedis/src/hiredis/hiredis.h        |  154 ++++-
 RcppRedis-0.2.0/RcppRedis/src/hiredis/net.c            |  219 +++++--
 RcppRedis-0.2.0/RcppRedis/src/hiredis/net.h            |    6 
 RcppRedis-0.2.0/RcppRedis/src/hiredis/read.c           |  231 ++++++--
 RcppRedis-0.2.0/RcppRedis/src/hiredis/read.h           |   26 
 RcppRedis-0.2.0/RcppRedis/src/hiredis/sds.c            |   34 -
 RcppRedis-0.2.0/RcppRedis/src/hiredis/sds.h            |   35 -
 RcppRedis-0.2.0/RcppRedis/src/hiredis/sdsalloc.h       |    8 
 RcppRedis-0.2.0/RcppRedis/src/hiredis/sockcompat.c     |only
 RcppRedis-0.2.0/RcppRedis/src/hiredis/sockcompat.h     |only
 RcppRedis-0.2.0/RcppRedis/src/hiredis/win32.h          |only
 RcppRedis-0.2.0/RcppRedis/tests/pubsub.R               |only
 RcppRedis-0.2.0/RcppRedis/vignettes                    |only
 41 files changed, 1571 insertions(+), 513 deletions(-)

More information about RcppRedis at CRAN
Permanent link

New package limorhyde2 with initial version 0.0.7
Package: limorhyde2
Title: Quantify Rhythmicity and Differential Rhythmicity in Genomic Data
Version: 0.0.7
Description: Fit linear models based on periodic splines, moderate model coefficients using multivariate adaptive shrinkage, then compute properties of the moderated curves.
URL: https://limorhyde2.hugheylab.org, https://github.com/hugheylab/limorhyde2
License: GPL-2
Encoding: UTF-8
LazyData: true
Depends: R (>= 3.6)
Imports: abind (>= 1.4-5), ashr (>= 2.2-54), checkmate (>= 2.0.0), data.table (>= 1.12.8), DESeq2 (>= 1.30.0), foreach (>= 1.5.0), HDInterval (>= 0.2.2), iterators (>= 1.0.12), limma (>= 3.42.2), mashr (>= 0.2.50), pbs (>= 1.1), zeallot (>= 0.1.0)
Suggests: cowplot (>= 1.1.1), knitr, doParallel (>= 1.0.15), ggplot2 (>= 3.3.5), glue (>= 1.6.1), qs (>= 0.24.1), rmarkdown, testthat (>= 3.0.0)
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2022-03-03 16:00:58 UTC; joshuaschoenbachler
Author: Jake Hughey [aut, cre], Dora Obodo [aut], Elliot Outland [aut]
Maintainer: Jake Hughey <jakejhughey@gmail.com>
Repository: CRAN
Date/Publication: 2022-03-08 20:20:02 UTC

More information about limorhyde2 at CRAN
Permanent link

New package gosset with initial version 0.3
Package: gosset
Title: Tools for Data Analysis in Experimental Agriculture
Version: 0.3
URL: https://agrdatasci.github.io/gosset/
BugReports: https://github.com/agrdatasci/gosset/issues
Description: Toolkit for a workflow to analyse experimental agriculture data, from data synthesis to model selection and visualisation. The package is named after W.S. Gosset aka ‘Student’, a pioneer of modern statistics in small sample experimental design and analysis.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
Depends: R (>= 3.5.0), methods
Imports: BradleyTerry2, ggplot2, ggparty, partykit, PlackettLuce, psychotools, qvcalc, stats, tidyr, utils, patchwork
Suggests: gnm, knitr, psychotree, rmarkdown, testthat
Language: en-GB
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2022-03-04 11:15:38 UTC; kauefeitosadiasdesousa
Author: Kauê de Sousa [aut, cre] , Jacob van Etten [aut] , David Brown [aut] , Jonathan Steinke [aut]
Maintainer: Kauê de Sousa <kaue.desousa@inn.no>
Repository: CRAN
Date/Publication: 2022-03-08 20:50:05 UTC

More information about gosset at CRAN
Permanent link

New package ggpointless with initial version 0.0.1
Package: ggpointless
Title: Emphasize Observations with Points
Version: 0.0.1
Date: 2022-03-03
Description: Add minimal emphasis to your plots. 'ggpointless' is a small extension of the 'ggplot2' library making it easy to highlight the first, or last observations, sample minimum and maximum. The goal is to provide additional context. Or just some visual sugar.
License: MIT + file LICENSE
Encoding: UTF-8
URL: https://flrd.github.io/ggpointless/, https://github.com/flrd/ggpointless
BugReports: https://github.com/flrd/ggpointless/issues
Depends: ggplot2 (>= 3.3.0), R (>= 2.10)
Suggests: knitr, covr, testthat (>= 3.0.0), rmarkdown, ragg, ggtext
LazyData: true
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2022-03-03 19:23:28 UTC; markus
Author: Markus Döring [aut, cre]
Maintainer: Markus Döring <m4rkus.doering@gmail.com>
Repository: CRAN
Date/Publication: 2022-03-08 20:20:05 UTC

More information about ggpointless at CRAN
Permanent link

New package FEA with initial version 0.0.1
Package: FEA
Title: Finite Element Modeling for R
Version: 0.0.1
Author: Henna D. Bhramdat
Maintainer: Henna D. Bhramdat <bhramdath@ufl.edu>
Description: Finite element modeling of 2D geometries using constant strain triangles. Applies material properties and boundary conditions (load and constraint) to generate a finite element model. The model produces stress, strain, and nodal displacements; a heat map is available to demonstrate regions where output variables are high or low. Also provides options for creating a triangular mesh of 2D geometries. Package developed with reference to: Bathe, K. J. (1996). Finite Element Procedures.[ISBN 978-0-9790049-5-7] -- Seshu, P. (2012). Textbook of Finite Element Analysis. [ISBN-978-81-203-2315-5] -- Mustapha, K. B. (2018). Finite Element Computations in Mechanics with R. [ISBN 9781315144474].
License: GPL-3
Encoding: UTF-8
Imports: geometry, geosphere, ptinpoly, sp, MASS
Depends: R (>= 3.5.0)
LazyData: true
NeedsCompilation: no
Packaged: 2022-03-04 03:03:31 UTC; Henna
Repository: CRAN
Date/Publication: 2022-03-08 20:40:05 UTC

More information about FEA at CRAN
Permanent link

New package ebnm with initial version 1.0-9
Package: ebnm
Encoding: UTF-8
Version: 1.0-9
Date: 2022-03-02
Title: Solve the Empirical Bayes Normal Means Problem
URL: https://github.com/stephenslab/ebnm
BugReports: https://github.com/stephenslab/ebnm/issues
Description: Provides simple, fast, and stable functions to fit the normal means model using empirical Bayes. For available models and details, see function ebnm(). A comprehensive introduction to the package is provided by Willwerscheid and Stephens (2021) <arXiv:2110.00152>.
License: GPL (>= 3)
NeedsCompilation: no
Depends: R (>= 3.3.0)
Imports: stats, methods, ashr, mixsqp, truncnorm, trust, horseshoe, deconvolveR, magrittr, rlang, dplyr, ggplot2
Suggests: testthat, numDeriv, REBayes
Packaged: 2022-03-03 03:49:45 UTC; pcarbo
Author: Willwerscheid Jason [aut], Stephens Matthew [aut], Carbonetto Peter [aut, cre], Goldstein Andrew [ctb]
Maintainer: Carbonetto Peter <peter.carbonetto@gmail.com>
Repository: CRAN
Date/Publication: 2022-03-08 20:10:02 UTC

More information about ebnm at CRAN
Permanent link

New package chisquare with initial version 0.1
Package: chisquare
Title: Chi-Square Test of Independence
Version: 0.1
Description: Provides the facility to perform the chi-square test of independence, calculates permutation-based p value, and provides coefficients of association such as Phi, adjusted contingency coefficient, Cramer's V, bias-corrected Cramer's V, Cohen's w, Goodman-Kruskal's lambda and gamma. It also calculates standardized and adjusted standardized residuals. Different outputs are returned in nicely formatted tables.
Depends: R (>= 4.0.0)
Imports: formattable (>= 0.2.1)
License: GPL (>= 2)
Encoding: UTF-8
LazyData: true
NeedsCompilation: no
Packaged: 2022-03-03 20:16:30 UTC; gianmarcoalberti
Author: Gianmarco Alberti [aut, cre]
Maintainer: Gianmarco Alberti <gianmarcoalberti@gmail.com>
Repository: CRAN
Date/Publication: 2022-03-08 20:30:02 UTC

More information about chisquare at CRAN
Permanent link

New package airGRiwrm with initial version 0.6.1
Package: airGRiwrm
Title: 'airGR' Integrated Water Resource Management
Version: 0.6.1
Date: 2022-03-03
Description: Semi-distributed Precipitation-Runoff Modelling based on 'airGR' package models integrating human infrastructures and their managements.
License: AGPL-3
URL: https://airgriwrm.g-eau.fr/, https://github.com/inrae/airGRiwrm#readme
BugReports: https://github.com/inrae/airGRiwrm/issues
Depends: airGR (>= 1.7.0), R (>= 2.10)
Imports: DiagrammeR, dplyr, graphics, grDevices, utils
Suggests: spelling, htmltools, knitr, rmarkdown, testthat
VignetteBuilder: knitr
Encoding: UTF-8
LazyData: true
Language: en-US
NeedsCompilation: no
Packaged: 2022-03-03 15:54:57 UTC; david.dorchies
Author: David Dorchies [aut, cre] , Olivier Delaigue [ctb] , Guillaume Thirel [ctb]
Maintainer: David Dorchies <david.dorchies@inrae.fr>
Repository: CRAN
Date/Publication: 2022-03-08 20:20:08 UTC

More information about airGRiwrm at CRAN
Permanent link

New package SNPannotator with initial version 0.2.0.0
Package: SNPannotator
Title: Investigating the Functional Characteristics of Selected SNPs and Their Vicinity Genomic Region
Version: 0.2.0.0
Date: 2022-03-02
Author: Alireza Ani [aut, cre], Zoha Kamali [aut], Ahmad Vaez [aut]
Maintainer: Alireza Ani <a.ani@umcg.nl>
Depends: R (>= 3.5)
Imports: data.table, httr, jsonlite, xml2, openxlsx, progress, doParallel, foreach, ggplot2, kableExtra, methods, rmarkdown
Description: To investigate the functional characteristics of selected SNPs and their vicinity genomic region. Linked SNPs in moderate to high linkage disequilibrium (e.g. r2>0.50) with the corresponding index SNPs will be selected for further analysis.
License: GPL-3
Encoding: UTF-8
NeedsCompilation: no
Packaged: 2022-03-03 11:21:23 UTC; Alireza
Repository: CRAN
Date/Publication: 2022-03-08 20:00:02 UTC

More information about SNPannotator at CRAN
Permanent link

Package SurvMetrics updated to version 0.4.5 with previous version 0.4.0 dated 2022-01-07

Title: Predictive Evaluation Metrics in Survival Analysis
Description: An implementation of popular evaluation metrics that are commonly used in survival prediction including Concordance Index, Brier Score, Integrated Brier Score, Integrated Square Error, Integrated Absolute Error and Mean Absolute Error. For a detailed information, see (Ishwaran H, Kogalur UB, Blackstone EH and Lauer MS (2008) <doi:10.1214/08-AOAS169>) and (Moradian H, Larocque D and Bellavance F (2017) <doi:10.1007/s10985-016-9372-1>) for different evaluation metrics.
Author: Hanpu Zhou [aut, cre], Xuewei Cheng [aut], Sizheng Wang [aut], Yi Zou [aut], Hong Wang [aut]
Maintainer: Hanpu Zhou <zhouhanpu@csu.edu.cn>

Diff between SurvMetrics versions 0.4.0 dated 2022-01-07 and 0.4.5 dated 2022-03-08

 DESCRIPTION   |   12 ++++++------
 MD5           |   12 ++++++------
 NEWS.md       |    4 ++--
 R/IAEISE.R    |   12 +++++-------
 R/IBS.R       |   14 ++++++--------
 man/IAEISE.Rd |   12 +++++-------
 man/IBS.Rd    |   14 ++++++--------
 7 files changed, 36 insertions(+), 44 deletions(-)

More information about SurvMetrics at CRAN
Permanent link

New package protti with initial version 0.2.2
Package: protti
Title: Bottom-Up Proteomics and LiP-MS Quality Control and Data Analysis Tools
Version: 0.2.2
Description: Useful functions and workflows for proteomics quality control and data analysis of both limited proteolysis-coupled mass spectrometry (LiP-MS) (Feng et. al. (2014) <doi:10.1038/nbt.2999>) and regular bottom-up proteomics experiments. Data generated with search tools such as 'Spectronaut', 'MaxQuant' and 'Proteome Discover' can be easily used due to flexibility of functions.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
biocViews:
Imports: rlang, dplyr, stringr, magrittr, data.table, janitor, progress, purrr, tidyr, ggplot2, forcats, tibble, plotly, ggrepel, utils, grDevices, curl, readr, lifecycle, httr
Suggests: testthat, covr, knitr, rmarkdown, proDA, limma, dendextend, pheatmap, heatmaply, furrr, future, parallel, seriation, drc, igraph, stringi, STRINGdb
Depends: R (>= 4.0)
URL: https://github.com/jpquast/protti, https://jpquast.github.io/protti/
BugReports: https://github.com/jpquast/protti/issues
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2022-03-03 12:33:34 UTC; jan-philippquast
Author: Jan-Philipp Quast [aut, cre] , Dina Schuster [aut] , ETH Zurich [cph, fnd]
Maintainer: Jan-Philipp Quast <quast@imsb.biol.ethz.ch>
Repository: CRAN
Date/Publication: 2022-03-08 16:40:02 UTC

More information about protti at CRAN
Permanent link

Package pec updated to version 2022.03.06 with previous version 2021.10.11 dated 2021-10-11

Title: Prediction Error Curves for Risk Prediction Models in Survival Analysis
Description: Validation of risk predictions obtained from survival models and competing risk models based on censored data using inverse weighting and cross-validation. Most of the 'pec' functionality has been moved to 'riskRegression'.
Author: Thomas A. Gerds
Maintainer: Thomas A. Gerds <tag@biostat.ku.dk>

Diff between pec versions 2021.10.11 dated 2021-10-11 and 2022.03.06 dated 2022-03-08

 DESCRIPTION                      |   12 +--
 MD5                              |   40 +++++------
 R/bootstrapCrossValidation.R     |    2 
 R/calPlot.R                      |   12 +--
 R/cindex.R                       |   18 ++---
 R/pec.R                          |    2 
 R/plotPredictSurvProb.R          |    5 -
 R/predictEventProb.selectFGR.R   |    2 
 R/predictRestrictedMeanTime.R    |    5 -
 R/predictSurvProb.R              |    5 -
 R/print.pec.R                    |   16 ++--
 R/summary.Cindex.R               |    2 
 man/cindex.Rd                    |   16 ++--
 man/plotPredictSurvProb.Rd       |    5 -
 man/predictRestrictedMeanTime.Rd |    4 -
 man/predictSurvProb.Rd           |    5 -
 man/selectFGR.Rd                 |    1 
 src/auc.c                        |    4 -
 src/ccr.c                        |    3 
 src/cindex.c                     |    4 -
 src/pec.c                        |  135 +++++++++++++++++++--------------------
 21 files changed, 130 insertions(+), 168 deletions(-)

More information about pec at CRAN
Permanent link

Package NNS updated to version 0.8.5 with previous version 0.8.4.1 dated 2022-01-13

Title: Nonlinear Nonparametric Statistics
Description: Nonlinear nonparametric statistics using partial moments. Partial moments are the elements of variance and asymptotically approximate the area of f(x). These robust statistics provide the basis for nonlinear analysis while retaining linear equivalences. NNS offers: Numerical integration, Numerical differentiation, Clustering, Correlation, Dependence, Causal analysis, ANOVA, Regression, Classification, Seasonality, Autoregressive modeling, Normalization and Stochastic dominance. All routines based on: Viole, F. and Nawrocki, D. (2013), Nonlinear Nonparametric Statistics: Using Partial Moments (ISBN: 1490523995).
Author: Fred Viole
Maintainer: Fred Viole <ovvo.financial.systems@gmail.com>

Diff between NNS versions 0.8.4.1 dated 2022-01-13 and 0.8.5 dated 2022-03-08

 DESCRIPTION                                          |    8 
 MD5                                                  |   76 +--
 R/ANOVA.R                                            |    6 
 R/ARMA.R                                             |    4 
 R/ARMA_optim.R                                       |   53 +-
 R/Boost.R                                            |    6 
 R/Causation.R                                        |    6 
 R/Copula.R                                           |   53 +-
 R/Dependence.R                                       |    2 
 R/Dependence_matrix.R                                |    2 
 R/FSD.R                                              |    4 
 R/LPM_UPM_VaR.R                                      |    4 
 R/NNS_VAR.R                                          |    2 
 R/NNS_meboot.R                                       |   29 -
 R/NNS_term_matrix.R                                  |    2 
 R/Normalization.R                                    |   52 +-
 R/Partial_Moments.R                                  |   32 -
 R/Partition_Map.R                                    |    4 
 R/Regression.R                                       |    4 
 R/SD_Efficient_Set.R                                 |    3 
 R/SSD.R                                              |    4 
 R/Seasonality_Test.R                                 |    2 
 R/Stack.R                                            |    6 
 R/TSD.R                                              |    4 
 R/Uni_SD_Routines.R                                  |   12 
 R/dy_d_wrt.R                                         |    4 
 R/dy_dx.R                                            |    4 
 README.md                                            |    6 
 inst/doc/NNSvignette_Classification.html             |  300 ++++++++++++++-
 inst/doc/NNSvignette_Clustering_and_Regression.html  |  305 ++++++++++++++-
 inst/doc/NNSvignette_Correlation_and_Dependence.html |  285 +++++++++++++-
 inst/doc/NNSvignette_Forecasting.R                   |    3 
 inst/doc/NNSvignette_Forecasting.Rmd                 |    3 
 inst/doc/NNSvignette_Forecasting.html                |  373 +++++++++++++++++--
 inst/doc/NNSvignette_Partial_Moments.html            |  243 +++++++++++-
 man/NNS.ARMA.optim.Rd                                |   13 
 man/NNS.copula.Rd                                    |    4 
 man/NNS.norm.Rd                                      |    4 
 vignettes/NNSvignette_Forecasting.Rmd                |    3 
 39 files changed, 1605 insertions(+), 325 deletions(-)

More information about NNS at CRAN
Permanent link

Package logr updated to version 1.2.9 with previous version 1.2.8 dated 2022-01-13

Title: Creates Log Files
Description: Contains functions to help create log files. The package aims to overcome the difficulty of the base R sink() command. The log_print() function will print to both the console and the file log, without interfering in other write operations.
Author: David Bosak [aut, cre]
Maintainer: David Bosak <dbosak01@gmail.com>

Diff between logr versions 1.2.8 dated 2022-01-13 and 1.2.9 dated 2022-03-08

 DESCRIPTION                 |    6 +-
 MD5                         |   11 ++---
 NEWS.md                     |    4 +
 R/logr.R                    |   14 +++++-
 tests/testthat/log/test.log |   95 +++++---------------------------------------
 tests/testthat/log/test.msg |only
 tests/testthat/test-logr.R  |    5 --
 7 files changed, 38 insertions(+), 97 deletions(-)

More information about logr at CRAN
Permanent link

Package gamlss.dist updated to version 6.0-3 with previous version 6.0-1 dated 2021-11-13

Title: Distributions for Generalized Additive Models for Location Scale and Shape
Description: A set of distributions which can be used for modelling the response variables in Generalized Additive Models for Location Scale and Shape, Rigby and Stasinopoulos (2005), <doi:10.1111/j.1467-9876.2005.00510.x>. The distributions can be continuous, discrete or mixed distributions. Extra distributions can be created, by transforming, any continuous distribution defined on the real line, to a distribution defined on ranges 0 to infinity or 0 to 1, by using a ''log'' or a ''logit' transformation respectively.
Author: Mikis Stasinopoulos [aut, cre, cph], Robert Rigby [aut], Calliope Akantziliotou [ctb], Vlasios Voudouris [ctb], Gillian Heller [ctb], Fernanda De Bastiani [ctb], Raydonal Ospina [ctb], Nicoletta Motpan [ctb], Fiona McElduff [ctb], Majid Djennad [ctb] [...truncated...]
Maintainer: Mikis Stasinopoulos <d.stasinopoulos@londonmet.ac.uk>

Diff between gamlss.dist versions 6.0-1 dated 2021-11-13 and 6.0-3 dated 2022-03-08

 gamlss.dist-6.0-1/gamlss.dist/inst/doc/Distributions-2010.pdf |only
 gamlss.dist-6.0-3/gamlss.dist/DESCRIPTION                     |   10 ++++-----
 gamlss.dist-6.0-3/gamlss.dist/MD5                             |   11 ++++------
 gamlss.dist-6.0-3/gamlss.dist/NAMESPACE                       |    1 
 gamlss.dist-6.0-3/gamlss.dist/R/Functions_for_SK_in_gamlss.R  |    4 +--
 gamlss.dist-6.0-3/gamlss.dist/R/GT.R                          |    7 +++---
 gamlss.dist-6.0-3/gamlss.dist/build/partial.rdb               |binary
 7 files changed, 17 insertions(+), 16 deletions(-)

More information about gamlss.dist at CRAN
Permanent link

Package csppData updated to version 0.2.5 with previous version 0.1.4 dated 2021-10-16

Title: Data Only: The Correlates of State Policy Project Dataset
Description: Contains the Correlates of State Policy Project dataset (+ codebook) assembled by Marty P. Jordan and Matt Grossmann (2020) <http://ippsr.msu.edu/public-policy/correlates-state-policy> used by the 'cspp' package. The Correlates data contains over 3000 variables across more than 100 years that pertain to state politics and policy in the United States.
Author: Caleb Lucas and Joshua McCrain
Maintainer: Caleb Lucas <calebjlucas@gmail.com>

Diff between csppData versions 0.1.4 dated 2021-10-16 and 0.2.5 dated 2022-03-08

 DESCRIPTION         |    8 ++++----
 MD5                 |   18 +++++++++---------
 R/codebook.R        |    2 +-
 R/correlates.R      |    3 +--
 R/zzz.R             |    2 +-
 README.md           |   19 +++++++++++--------
 data/codebook.rda   |binary
 data/correlates.rda |binary
 man/codebook.Rd     |    4 ++--
 man/correlates.Rd   |    5 ++---
 10 files changed, 31 insertions(+), 30 deletions(-)

More information about csppData at CRAN
Permanent link

Package xaringan updated to version 0.23 with previous version 0.22 dated 2021-06-23

Title: Presentation Ninja
Description: Create HTML5 slides with R Markdown and the JavaScript library 'remark.js' (<https://remarkjs.com>).
Author: Yihui Xie [aut, cre] , Alessandro Gasparini [ctb] , Benjie Gillam [ctb], Claus Thorn Ekstrøm [ctb], Daniel Anderson [ctb], Dawei Lang [ctb], Deo Salil [ctb], Emi Tanaka [ctb], Garrick Aden-Buie [ctb] , Iñaki Ucar [ctb] , John Little [ctb], Joselyn Ch [...truncated...]
Maintainer: Yihui Xie <xie@yihui.name>

Diff between xaringan versions 0.22 dated 2021-06-23 and 0.23 dated 2022-03-08

 DESCRIPTION                                          |    8 ++++----
 MD5                                                  |   12 ++++++------
 R/render.R                                           |    8 +++++---
 README.md                                            |    2 +-
 build/vignette.rds                                   |binary
 inst/rmarkdown/templates/xaringan/resources/useR.css |    9 ++++++---
 man/decktape.Rd                                      |    8 +++-----
 7 files changed, 25 insertions(+), 22 deletions(-)

More information about xaringan at CRAN
Permanent link

Package sdcHierarchies updated to version 0.19.2 with previous version 0.19.1 dated 2021-08-05

Title: Create and (Interactively) Modify Nested Hierarchies
Description: Provides functionality to generate, (interactively) modify (by adding, removing and renaming nodes) and convert nested hierarchies between different formats. These tree like structures can be used to define for example complex hierarchical tables used for statistical disclosure control.
Author: Bernhard Meindl [aut, cre]
Maintainer: Bernhard Meindl <Bernhard.Meindl@statistik.gv.at>

Diff between sdcHierarchies versions 0.19.1 dated 2021-08-05 and 0.19.2 dated 2022-03-08

 DESCRIPTION                      |   10 +++++-----
 MD5                              |   12 ++++++------
 NEWS.md                          |    3 +++
 README.md                        |    2 +-
 build/vignette.rds               |binary
 inst/doc/usage.html              |    5 +++--
 tests/testthat/test_additional.R |    6 +++---
 7 files changed, 21 insertions(+), 17 deletions(-)

More information about sdcHierarchies at CRAN
Permanent link

Package fbst updated to version 1.7 with previous version 1.6 dated 2022-01-06

Title: The Full Bayesian Evidence Test, Full Bayesian Significance Test and the e-Value
Description: Provides access to a range of functions for computing and visualizing the Full Bayesian Significance Test (FBST) and the e-value for testing a sharp hypothesis against its alternative, and the Full Bayesian Evidence Test (FBET) and the (generalized) Bayesian evidence value for testing a composite (or interval) hypothesis against its alternative. The methods are widely applicable as long as a posterior MCMC sample is available. For details on the computation and theory of the FBST see <arXiv:2005.13181>.
Author: Riko Kelter
Maintainer: Riko Kelter <riko.kelter@uni-siegen.de>

Diff between fbst versions 1.6 dated 2022-01-06 and 1.7 dated 2022-03-08

 DESCRIPTION        |    8 +--
 MD5                |   22 ++++----
 R/fbst.R           |  140 +++++++++++++++++++++++++++++++----------------------
 build/partial.rdb  |binary
 inst/doc/fbet.R    |   19 ++++---
 inst/doc/fbet.Rmd  |   33 ++++++------
 inst/doc/fbet.html |   63 ++++++++++++-----------
 inst/doc/fbst.R    |   15 +++--
 inst/doc/fbst.Rmd  |   23 ++++----
 inst/doc/fbst.html |   55 ++++++++++----------
 vignettes/fbet.Rmd |   33 ++++++------
 vignettes/fbst.Rmd |   23 ++++----
 12 files changed, 243 insertions(+), 191 deletions(-)

More information about fbst at CRAN
Permanent link

Package SynthCast updated to version 0.2.1 with previous version 0.2.0 dated 2021-06-14

Title: Synthetic Control Method to Forecast Series
Description: Not a new method implementation. Usage of the Synthetic Control Method, see Abadie et al. (2011) <doi:10.18637/jss.v042.i13>, as an ad-hoc approach to forecast series with panel in a specific context. The context being: There are units in different stages of a certain journey, there the assumption that the units’ behavior throw out the journey are similar is valid and there are not enough data to use traditional forecasting methods. For a usage example see the package home page documentation.
Author: Vinicius Sousa [aut, cph, cre]
Maintainer: Vinicius Sousa <vinisousa04@gmail.com>

Diff between SynthCast versions 0.2.0 dated 2021-06-14 and 0.2.1 dated 2022-03-08

 DESCRIPTION                              |    9 ++--
 MD5                                      |   23 ++++++----
 NAMESPACE                                |    5 ++
 R/compute_result_tables.R                |    3 -
 R/compute_synthetic_control.R            |    3 -
 R/intern_elegile_units.R                 |    3 -
 R/intern_get_max_time_unit_of_interest.R |    3 -
 R/prepare_dataset.R                      |    8 ++-
 R/run_synthetic_forecast.R               |    2 
 build                                    |only
 inst                                     |only
 tests/testthat/test-syth-cast.R          |   66 +++++++++++++++++++++++++++++++
 vignettes                                |only
 13 files changed, 104 insertions(+), 21 deletions(-)

More information about SynthCast at CRAN
Permanent link

New package varTestnlme with initial version 1.3.1
Package: varTestnlme
Title: Variance Components Testing for Linear and Nonlinear Mixed Effects Models
Version: 1.3.1
URL: https://github.com/baeyc/varTestnlme/
BugReports: https://github.com/baeyc/varTestnlme/issues
Maintainer: Charlotte Baey <charlotte.baey@univ-lille.fr>
Description: An implementation of the Likelihood ratio Test (LRT) for testing that, in a (non)linear mixed effects model, the variances of a subset of the random effects are equal to zero. There is no restriction on the subset of variances that can be tested: for example, it is possible to test that all the variances are equal to zero. Note that the implemented test is asymptotic. This package should be used on model fits from packages 'nlme', 'lmer', and 'saemix'. Charlotte Baey, Paul-Henry Cournède and Estelle Kuhn (2019) <doi:10.1016/j.csda.2019.01.014>.
License: GPL (>= 2)
Encoding: UTF-8
Imports: mvtnorm, alabama, Matrix, merDeriv, anocva, corpcor, quadprog, lme4, nlme, nlmeU, purrr, saemix, msm, foreach, methods, doParallel, parallel
Suggests: knitr, rmarkdown, EnvStats
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2022-03-07 12:35:17 UTC; charlotte
Author: Charlotte Baey [aut, cre] , Estelle Kuhn [aut]
Repository: CRAN
Date/Publication: 2022-03-08 13:20:02 UTC

More information about varTestnlme at CRAN
Permanent link

New package supercells with initial version 0.8.2
Package: supercells
Title: Superpixels of Spatial Data
Version: 0.8.2
Description: Creates superpixels based on input spatial data. This package works on spatial data with one variable (e.g., continuous raster), many variables (e.g., RGB rasters), and spatial patterns (e.g., areas in categorical rasters). It is based on the SLIC algorithm (Achanta et al. (2012) <doi:10.1109/TPAMI.2012.120>), and readapts it to work with arbitrary dissimilarity measures.
License: GPL (>= 3)
Encoding: UTF-8
Imports: sf, terra (>= 1.4-21), philentropy (>= 0.6.0), future.apply
LinkingTo: cpp11
SystemRequirements: C++11
URL: https://jakubnowosad.com/supercells/
BugReports: https://github.com/Nowosad/supercells/issues
Suggests: knitr, covr, testthat (>= 3.0.0), rmarkdown, stars
NeedsCompilation: yes
Packaged: 2022-03-05 08:40:05 UTC; jn
Author: Jakub Nowosad [aut, cre] , Pascal Mettes [ctb] , Charles Jekel [ctb]
Maintainer: Jakub Nowosad <nowosad.jakub@gmail.com>
Repository: CRAN
Date/Publication: 2022-03-08 13:10:02 UTC

More information about supercells at CRAN
Permanent link

New package shar with initial version 1.3.2
Package: shar
Title: Species-Habitat Associations
Version: 1.3.2
Maintainer: Maximillian H.K. Hesselbarth <mhk.hesselbarth@gmail.com>
Description: Analyse species-habitat associations in R. Therefore, information about the location of the species (as a point pattern) is needed together with environmental conditions (as a categorical raster). To test for significance habitat associations, one of the two components is randomized. Methods are mainly based on Plotkin et al. (2000) <doi:10.1006/jtbi.2000.2158> and Harms et al. (2001) <doi:10.1111/j.1365-2745.2001.00615.x>.
License: GPL (>= 3)
URL: https://r-spatialecology.github.io/shar/
BugReports: https://github.com/r-spatialecology/shar/issues/
Depends: R (>= 3.1.0)
Imports: classInt, graphics, grDevices, methods, raster, spatstat.core, spatstat.geom, spatstat.random, stats, utils
Suggests: covr, dplyr, future, future.apply, knitr, rmarkdown, spatstat (>= 2.0.0), testthat (>= 2.1.0)
VignetteBuilder: knitr
Encoding: UTF-8
LazyData: true
NeedsCompilation: no
Packaged: 2022-03-05 15:21:29 UTC; Maximilian
Author: Maximillian H.K. Hesselbarth [aut, cre] , Marco Sciaini [aut] , Zeke Marshall [ctb] , Thomas Etherington [ctb]
Repository: CRAN
Date/Publication: 2022-03-08 13:40:02 UTC

More information about shar at CRAN
Permanent link

New package RClickhouse with initial version 0.6.3
Package: RClickhouse
Title: 'Yandex Clickhouse' Interface for R with Basic 'dplyr' Support
Version: 0.6.3
Encoding: UTF-8
Description: 'Yandex Clickhouse' (<https://clickhouse.com/>) is a high-performance relational column-store database to enable big data exploration and 'analytics' scaling to petabytes of data. Methods are provided that enable working with 'Yandex Clickhouse' databases via 'DBI' methods and using 'dplyr'/'dbplyr' idioms.
License: GPL-2
SystemRequirements: C++11
Imports: dplyr (>= 0.7.0), dbplyr (>= 1.0.0), methods (>= 3.3.2), DBI (>= 0.6.0), Rcpp (>= 0.11.0), bit64
NeedsCompilation: yes
Depends: R (>= 3.3)
Suggests: testthat
URL: https://github.com/IMSMWU/RClickhouse
BugReports: https://github.com/IMSMWU/RClickhouse/issues
LinkingTo: Rcpp
Packaged: 2022-03-03 20:04:02 UTC; jovyan
Author: Christian Hotz-Behofsits [aut, cre], Daniel Winkler [aut], Luca Rauchenberger [aut], Peter Knaus [aut], Clemens Danninger [aut], Simon Stiebellehner [aut], Dan Egnor [aut], Vlad Losev [aut], Keith Ray [aut], Zhanyong Wan [aut], Markus Heule [aut], Ol [...truncated...]
Maintainer: Christian Hotz-Behofsits <christian.hotz-behofsits@wu.ac.at>
Repository: CRAN
Date/Publication: 2022-03-08 13:40:08 UTC

More information about RClickhouse at CRAN
Permanent link

Package rbmi updated to version 1.1.1 with previous version 1.1.0 dated 2022-03-02

Title: Reference Based Multiple Imputation
Description: Implements reference based multiple imputation allowing for the imputation of longitudinal datasets using predefined strategies.
Author: Craig Gower-Page [aut, cre], Alessandro Noci [aut], Marcel Wolbers [ctb], Roche [cph, fnd]
Maintainer: Craig Gower-Page <craig.gower-page@roche.com>

Diff between rbmi versions 1.1.0 dated 2022-03-02 and 1.1.1 dated 2022-03-08

 DESCRIPTION                |    6 +++---
 MD5                        |    6 +++---
 inst/doc/advanced.html     |    2 +-
 tests/testthat/test-pool.R |   16 +++++++---------
 4 files changed, 14 insertions(+), 16 deletions(-)

More information about rbmi at CRAN
Permanent link

New package OSDR with initial version 1.1.4
Package: OSDR
Title: Finds an Optimal System of Distinct Representatives
Version: 1.1.4
Date: 2022-03-07
Author: Massimo Cannas [aut, cre]
Maintainer: Massimo Cannas <massimo.cannas@unica.it>
Description: Provides routines for finding an Optimal System of Distinct Representatives (OSDR), as defined by D.Gale (1968) <doi:10.1016/S0021-9800(68)80039-0>.
License: GPL-3
URL: https://cran.r-project.org/package=OSDR
NeedsCompilation: no
Packaged: 2022-03-07 15:53:48 UTC; massimo
Repository: CRAN
Date/Publication: 2022-03-08 13:30:05 UTC

More information about OSDR at CRAN
Permanent link

Package opentimsr updated to version 1.0.12 with previous version 1.0.11 dated 2021-12-18

Title: An Open-Source Loader for Bruker's timsTOF Data Files
Description: A free, open-source package designed for handling .tdf data files produced by Bruker's 'timsTOF' mass spectrometers. Fast, free, crossplatform, with no reading through EULAs or messing with binary .dll files involved.
Author: Michał Piotr Startek [aut, cre, cph] , Mateusz Krzysztof Łącki [aut, cph]
Maintainer: Michał Piotr Startek <michal.startek@mimuw.edu.pl>

Diff between opentimsr versions 1.0.11 dated 2021-12-18 and 1.0.12 dated 2022-03-08

 DESCRIPTION                             |   10 +++++-----
 MD5                                     |   23 ++++++++++++-----------
 NAMESPACE                               |    1 +
 R/RcppExports.R                         |    4 ++++
 R/opentimsr.R                           |   15 +++++++++++++++
 man/opentims_set_threads.Rd             |only
 src/RcppExports.cpp                     |   11 +++++++++++
 src/Rinterface.cpp                      |    9 ++++++++-
 src/opentims.cpp                        |    7 +++----
 src/scan2inv_ion_mobility_converter.cpp |   17 +++++++++++++++++
 src/scan2inv_ion_mobility_converter.h   |    9 +++++++++
 src/tof2mz_converter.cpp                |   14 ++++++++++++++
 src/tof2mz_converter.h                  |    4 ++++
 13 files changed, 103 insertions(+), 21 deletions(-)

More information about opentimsr at CRAN
Permanent link

New package fishualize with initial version 0.2.3
Package: fishualize
Title: Color Palettes Based on Fish Species
Version: 0.2.3
Maintainer: Nina M. D. Schiettekatte <nina.schiettekatte@gmail.com>
Description: Implementation of color palettes based on fish species.
License: GPL-2
Encoding: UTF-8
LazyData: true
Depends: R (>= 2.10)
Suggests: testthat, knitr, rmarkdown, rfishbase, rnaturalearth, pkgdown
URL: https://github.com/nschiett/fishualize
BugReports: https://github.com/nschiett/fishualize/issues
Imports: ggplot2 (>= 1.0.1), gridExtra, grid, png, downloader, utils, httr, magrittr, stringr, dplyr, tidyr, scales, rlang, curl
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2022-03-08 01:56:28 UTC; nina
Author: Nina M. D. Schiettekatte [cre, aut], Simon J. Brandl [aut], Jordan M. Casey [aut]
Repository: CRAN
Date/Publication: 2022-03-08 13:30:02 UTC

More information about fishualize at CRAN
Permanent link

Package FactorAssumptions updated to version 2.0.1 with previous version 1.1.2 dated 2020-03-06

Title: Set of Assumptions for Factor and Principal Component Analysis
Description: Tests for Kaiser-Meyer-Olkin (KMO) and communalities in a dataset. It provides a final sample by removing variables in a iterable manner while keeping account of the variables that were removed in each step. It follows the best practices and assumptions according to Hair, Black, Babin & Anderson (2018, ISBN:9781473756540).
Author: Jose Storopoli [aut, cre]
Maintainer: Jose Storopoli <jstoropoli@protonmail.com>

Diff between FactorAssumptions versions 1.1.2 dated 2020-03-06 and 2.0.1 dated 2022-03-08

 DESCRIPTION            |   11 +--
 MD5                    |   10 +--
 NEWS.md                |    6 +
 README.md              |    4 -
 build/vignette.rds     |binary
 inst/doc/vignette.html |  152 ++++++++++++++++++++++++++++++++++++++-----------
 6 files changed, 135 insertions(+), 48 deletions(-)

More information about FactorAssumptions at CRAN
Permanent link

New package bootStepAIC with initial version 1.3-0
Package: bootStepAIC
Title: Bootstrap stepAIC
Version: 1.3-0
Date: 2022-03-07
Author: Dimitris Rizopoulos <d.rizopoulos@erasmusmc.nl>
Maintainer: Dimitris Rizopoulos <d.rizopoulos@erasmusmc.nl>
Description: Model selection by bootstrapping the stepAIC() procedure.
Depends: R(>= 4.0.0), MASS
LazyLoad: yes
License: GPL (>= 2)
NeedsCompilation: no
Packaged: 2022-03-07 11:30:19 UTC; drizo
Repository: CRAN
Date/Publication: 2022-03-08 13:40:05 UTC

More information about bootStepAIC at CRAN
Permanent link

Package ursa updated to version 3.9.6 with previous version 3.9.5 dated 2022-01-25

Title: Non-Interactive Spatial Tools for Raster Processing and Visualization
Description: S3 classes and methods for manipulation with georeferenced raster data: reading/writing, processing, multi-panel visualization. SWU.
Author: Nikita Platonov [aut, cre]
Maintainer: Nikita Platonov <platonov@sevin.ru>

Diff between ursa versions 3.9.5 dated 2022-01-25 and 3.9.6 dated 2022-03-08

 DESCRIPTION                  |   12 +-
 MD5                          |   76 +++++++--------
 NAMESPACE                    |    2 
 NEWS.md                      |   44 ++++++--
 R/classRaster.R              |    2 
 R/classRaster_GroupGeneric.R |    2 
 R/classRaster_close.R        |    6 -
 R/colorize.R                 |    8 +
 R/compose_close.R            |   14 ++
 R/compose_open.R             |   37 ++++++-
 R/conn.open_envi.R           |    5 
 R/conn.read_gdal.R           |   41 +++++---
 R/conn.write_gdal.R          |   22 +++-
 R/legend_colorbar.R          |   13 +-
 R/package_raster.R           |    3 
 R/panel_coastline.R          |  131 ++++++++++++++++----------
 R/panel_raster.R             |    8 +
 R/spatial_read.R             |    2 
 R/spatial_write.R            |    4 
 R/ursa_000.R                 |    2 
 R/ursa_as.R                  |  216 +++++++++++++++++++++++++++++++++++--------
 R/xxx.browse.R               |   18 ++-
 R/xxx.gdalwarp.R             |    8 +
 R/xxx.spatialize.R           |   24 +++-
 R/yyy.connection.R           |    2 
 R/yyy.crop.R                 |   75 ++++++++++++--
 R/yyy.project.R              |   22 ++--
 R/yyy.tile.R                 |    2 
 R/yyy.util.R                 |    6 -
 R/zzz.R                      |    2 
 inst/requisite/coast-l.rds   |binary
 man/compose_open.Rd          |    4 
 man/conn.open_gdal.Rd        |    2 
 man/conn.read_gdal.Rd        |    2 
 man/package_raster.Rd        |    1 
 man/polygonize.Rd            |    2 
 man/reclass.Rd               |    2 
 man/spatial_read.Rd          |    7 -
 src/ursa.c                   |    6 -
 39 files changed, 605 insertions(+), 230 deletions(-)

More information about ursa at CRAN
Permanent link

Package tramME updated to version 0.1.3 with previous version 0.1.2 dated 2021-08-16

Title: Transformation Models with Mixed Effects
Description: Likelihood-based estimation of mixed-effects transformation models using the Template Model Builder (TMB, Kristensen et al., 2016, <doi:10.18637/jss.v070.i05>). The technical details of transformation models are given in Hothorn et al. (2018, <doi:10.1111/sjos.12291>). Likelihood contributions of exact, randomly censored (left, right, interval) and truncated observations are supported. The random effects are assumed to be normally distributed on the scale of the transformation function, the marginal likelihood is evaluated using the Laplace approximation, and the gradients are calculated with automatic differentiation (AD).
Author: Balint Tamasi [aut, cre] , Torsten Hothorn [ctb]
Maintainer: Balint Tamasi <balint.tamasi@uzh.ch>

Diff between tramME versions 0.1.2 dated 2021-08-16 and 0.1.3 dated 2022-03-08

 DESCRIPTION                        |    6 +++---
 MD5                                |   12 +++++++-----
 NEWS.md                            |    4 ++++
 R/tramTMB.R                        |   26 +-------------------------
 build/vignette.rds                 |binary
 inst/doc/tramME.pdf                |binary
 vignettes/MEE-example-analyses.pdf |only
 vignettes/MEE-example-analyses.tex |only
 8 files changed, 15 insertions(+), 33 deletions(-)

More information about tramME at CRAN
Permanent link

Package taxonbridge updated to version 1.0.4 with previous version 1.0.3 dated 2022-02-22

Title: Create Custom Taxonomies Based on the NCBI Taxonomy and GBIF Backbone Taxonomy
Description: The NCBI taxonomy is a popular resource for taxonomic studies but it only contains data on species with sequence data whereas the GBIF has a more extensive coverage of extinct species. Taxonbridge is useful for the creation and analysis of custom taxonomies based on the NCBI taxonomy and GBIF backbone taxonomy.
Author: Werner Veldsman [aut, cre]
Maintainer: Werner Veldsman <wernerpieter.veldsman@unil.ch>

Diff between taxonbridge versions 1.0.3 dated 2022-02-22 and 1.0.4 dated 2022-03-08

 DESCRIPTION                          |    6 -
 MD5                                  |   31 ++++-----
 NAMESPACE                            |    1 
 NEWS.md                              |    7 ++
 R/get_methods.R                      |   10 ++-
 R/helper_methods.R                   |   45 ++++++++++++-
 R/load_methods.R                     |    2 
 README.md                            |    4 -
 inst/doc/Examples.R                  |   44 +++++++++++++
 inst/doc/Examples.Rmd                |  100 +++++++++++++++++++++++++++++-
 inst/doc/Examples.html               |  116 ++++++++++++++++++++++++++++++++++-
 man/annotate.Rd                      |only
 man/fuzzy_search.Rd                  |    4 -
 man/get_inconsistencies.Rd           |    2 
 man/get_validity.Rd                  |    4 -
 tests/testthat/test-helper_methods.R |    8 ++
 vignettes/Examples.Rmd               |  100 +++++++++++++++++++++++++++++-
 17 files changed, 451 insertions(+), 33 deletions(-)

More information about taxonbridge at CRAN
Permanent link

Package sn updated to version 2.0.2 with previous version 2.0.1 dated 2021-11-26

Title: The Skew-Normal and Related Distributions Such as the Skew-t and the SUN
Description: Build and manipulate probability distributions of the skew-normal family and some related ones, notably the skew-t and the SUN families. For the skew-normal and the skew-t distributions, statistical methods are provided for data fitting and model diagnostics, in the univariate and the multivariate case.
Author: Adelchi Azzalini [aut, cre]
Maintainer: Adelchi Azzalini <adelchi.azzalini@unipd.it>

Diff between sn versions 2.0.1 dated 2021-11-26 and 2.0.2 dated 2022-03-08

 DESCRIPTION             |    8 +-
 MD5                     |   20 ++---
 NEWS                    |    7 +
 R/sn-funct.R            |  171 +++++++++++++++++++++++++++---------------------
 R/sun.R                 |   32 ++++----
 build/partial.rdb       |binary
 man/dmsn.Rd             |    7 +
 man/dmst.Rd             |    4 -
 man/dsn.Rd              |   16 ++--
 man/summary.SUNdistr.Rd |    8 +-
 man/zeta.Rd             |    5 -
 11 files changed, 159 insertions(+), 119 deletions(-)

More information about sn at CRAN
Permanent link

Package simr updated to version 1.0.6 with previous version 1.0.5 dated 2019-01-29

Title: Power Analysis for Generalised Linear Mixed Models by Simulation
Description: Calculate power for generalised linear mixed models, using simulation. Designed to work with models fit using the 'lme4' package. Described in Green and MacLeod, 2016 <doi:10.1111/2041-210X.12504>.
Author: Peter Green [aut, cre] , Catriona MacLeod [aut], Phillip Alday [ctb]
Maintainer: Peter Green <simr.peter@gmail.com>

Diff between simr versions 1.0.5 dated 2019-01-29 and 1.0.6 dated 2022-03-08

 DESCRIPTION               |   28 ++--
 MD5                       |   26 ++--
 NEWS.md                   |    8 +
 R/maybe.R                 |   32 ++++-
 build/vignette.rds        |binary
 inst/doc/examples.R       |   40 +++---
 inst/doc/examples.html    |  283 +++++++++++++++++++++++++++++++---------------
 inst/doc/fromscratch.R    |   12 -
 inst/doc/fromscratch.html |  197 +++++++++++++++++++++-----------
 man/powerCurve.Rd         |   16 ++
 man/powerSim.Rd           |   12 +
 man/print.powerSim.Rd     |   31 +++--
 man/tests.Rd              |    6 
 tests/testthat/test_aaa.R |    2 
 14 files changed, 465 insertions(+), 228 deletions(-)

More information about simr at CRAN
Permanent link

Package semPlot updated to version 1.1.5 with previous version 1.1.4 dated 2022-02-21

Title: Path Diagrams and Visual Analysis of Various SEM Packages' Output
Description: Path diagrams and visual analysis of various SEM packages' output.
Author: Sacha Epskamp [aut, cre], Simon Stuber [ctb], Jason Nak [ctb], Myrthe Veenman [ctb], Terrence D. Jorgensen [ctb]
Maintainer: Sacha Epskamp <mail@sachaepskamp.com>

Diff between semPlot versions 1.1.4 dated 2022-02-21 and 1.1.5 dated 2022-03-08

 DESCRIPTION             |    6 
 MD5                     |   20 
 NAMESPACE               |  110 ++--
 NEWS                    |  200 ++++----
 R/lavaan.R              |  244 +++++-----
 R/semPathsHelperFuns.R  |  314 ++++++-------
 R/semSyntax.R           |    1 
 man/modelMatrices.Rd    |   22 
 man/semMatrixAlgebra.Rd |    6 
 man/semPaths.Rd         | 1138 ++++++++++++++++++++++++------------------------
 man/semSyntax.Rd        |    9 
 11 files changed, 1042 insertions(+), 1028 deletions(-)

More information about semPlot at CRAN
Permanent link

Package MLDataR updated to version 0.1.3 with previous version 0.1.2 dated 2022-02-02

Title: Collection of Machine Learning Datasets for Supervised Machine Learning
Description: Contains a collection of datasets for working with machine learning tasks. It will contain datasets for supervised machine learning Jiang (2020)<doi:10.1016/j.beth.2020.05.002> and will include datasets for classification and regression. The aim of this package is to use data generated around health and other domains.
Author: Gary Hutson [aut, cre] , Asif Laldin [aut], Isabella Velásquez [aut]
Maintainer: Gary Hutson <hutsons-hacks@outlook.com>

Diff between MLDataR versions 0.1.2 dated 2022-02-02 and 0.1.3 dated 2022-03-08

 DESCRIPTION                |   14 
 MD5                        |   40 -
 NEWS.md                    |   29 
 R/PreDiabetes.R            |   48 -
 R/care_home_incidents.R    |   62 +-
 R/csgo.R                   |only
 R/diabetes_data.R          |   66 +-
 R/heartdisease.R           |  102 +--
 R/long_stayers.R           |only
 R/thyroid_disease.R        |  212 +++---
 build/vignette.rds         |binary
 data/csgo.rda              |only
 data/long_stayers.rda      |only
 inst/doc/MLDataR.R         |  362 +++++++----
 inst/doc/MLDataR.Rmd       |  595 +++++++++++--------
 inst/doc/MLDataR.html      | 1383 +++++++++++++++++++++------------------------
 man/PreDiabetes.Rd         |   82 +-
 man/care_home_incidents.Rd |   98 +--
 man/csgo.Rd                |only
 man/diabetes_data.Rd       |  100 +--
 man/heartdisease.Rd        |  132 ++--
 man/long_stayers.Rd        |only
 man/thyroid_disease.Rd     |  244 +++----
 vignettes/MLDataR.Rmd      |  595 +++++++++++--------
 24 files changed, 2210 insertions(+), 1954 deletions(-)

More information about MLDataR at CRAN
Permanent link

Package MatchIt updated to version 4.3.4 with previous version 4.3.3 dated 2022-01-20

Title: Nonparametric Preprocessing for Parametric Causal Inference
Description: Selects matched samples of the original treated and control groups with similar covariate distributions -- can be used to match exactly on covariates, to match on propensity scores, or perform a variety of other matching procedures. The package also implements a series of recommendations offered in Ho, Imai, King, and Stuart (2007) <DOI:10.1093/pan/mpl013>. (The 'gurobi' package, which is not on CRAN, is optional and comes with an installation of the Gurobi Optimizer, available at <https://www.gurobi.com>. The 'optmatch' package may also not be on CRAN; see the 'MatchIt' documentation for instructions on installing it.)
Author: Daniel Ho [aut] , Kosuke Imai [aut] , Gary King [aut] , Elizabeth Stuart [aut] , Alex Whitworth [ctb], Noah Greifer [ctb, cre, aut]
Maintainer: Noah Greifer <noah.greifer@gmail.com>

Diff between MatchIt versions 4.3.3 dated 2022-01-20 and 4.3.4 dated 2022-03-08

 DESCRIPTION                              |   17 
 MD5                                      |   77 -
 NAMESPACE                                |    3 
 NEWS.md                                  |    8 
 R/match.data.R                           |    2 
 R/matchit.R                              |    6 
 build/MatchIt.pdf                        |only
 build/partial.rdb                        |binary
 build/vignette.rds                       |binary
 inst/doc/MatchIt.R                       |   14 
 inst/doc/MatchIt.Rmd                     |   21 
 inst/doc/MatchIt.html                    |  677 +++++++++++-
 inst/doc/assessing-balance.R             |    6 
 inst/doc/assessing-balance.Rmd           |   14 
 inst/doc/assessing-balance.html          | 1021 ++++++++++++++++---
 inst/doc/estimating-effects.R            |    6 
 inst/doc/estimating-effects.Rmd          |   14 
 inst/doc/estimating-effects.html         | 1622 +++++++++++++++++++++++++++----
 inst/doc/matching-methods.Rmd            |    2 
 inst/doc/matching-methods.html           | 1293 ++++++++++++++++++++++--
 inst/doc/sampling-weights.R              |    7 
 inst/doc/sampling-weights.Rmd            |   11 
 inst/doc/sampling-weights.html           |  381 ++++++-
 man/distance.Rd                          |   30 
 man/figures/README-unnamed-chunk-5-1.png |binary
 man/macros/macros.Rd                     |    8 
 man/matchit.Rd                           |    4 
 man/method_cardinality.Rd                |    8 
 man/method_full.Rd                       |   26 
 man/method_genetic.Rd                    |   13 
 man/method_nearest.Rd                    |    4 
 man/method_optimal.Rd                    |   29 
 man/plot.matchit.Rd                      |    2 
 man/plot.summary.matchit.Rd              |    2 
 man/summary.matchit.Rd                   |    2 
 vignettes/MatchIt.Rmd                    |   21 
 vignettes/assessing-balance.Rmd          |   14 
 vignettes/estimating-effects.Rmd         |   14 
 vignettes/matching-methods.Rmd           |    2 
 vignettes/sampling-weights.Rmd           |   11 
 40 files changed, 4657 insertions(+), 735 deletions(-)

More information about MatchIt at CRAN
Permanent link

Package maptools updated to version 1.1-3 with previous version 1.1-2 dated 2021-09-07

Title: Tools for Handling Spatial Objects
Description: Please note that 'maptools' will be retired by the end of 2023, plan transition at your earliest convenience; some functionality will be moved to 'sp'. Set of tools for manipulating geographic data. It includes binary access to 'GSHHG' shoreline files. The package also provides interface wrappers for exchanging spatial objects with packages such as 'PBSmapping', 'spatstat.geom', 'maps', and others.
Author: Roger Bivand [cre, aut] , Nicholas Lewin-Koh [aut], Edzer Pebesma [ctb], Eric Archer [ctb], Adrian Baddeley [ctb], Nick Bearman [ctb], Hans-Jörg Bibiko [ctb], Steven Brey [ctb], Jonathan Callahan [ctb], German Carrillo [ctb], Stéphane Dray [ctb], Dav [...truncated...]
Maintainer: Roger Bivand <Roger.Bivand@nhh.no>

Diff between maptools versions 1.1-2 dated 2021-09-07 and 1.1-3 dated 2022-03-08

 DESCRIPTION                   |    8 ++++----
 MD5                           |   16 ++++++++--------
 NEWS.md                       |    6 +++++-
 build/vignette.rds            |binary
 data/SplashDams.rda           |binary
 data/wrld_simpl.rda           |binary
 inst/doc/combine_maptools.pdf |binary
 man/lineLabel.Rd              |    6 ++++--
 man/pointLabelLattice.Rd      |    8 +++++---
 9 files changed, 26 insertions(+), 18 deletions(-)

More information about maptools at CRAN
Permanent link

Package lefko3 updated to version 5.0.1 with previous version 4.2.0 dated 2022-01-19

Title: Historical and Ahistorical Population Projection Matrix Analysis
Description: Complete analytical environment for the construction and analysis of matrix population models and integral projection models. Includes the ability to construct historical matrices, which are 2d matrices comprising 3 consecutive times of demographic information. Estimates both raw and function-based forms of historical and standard ahistorical matrices. It also estimates function-based age-by-stage matrices and raw and function-based Leslie matrices.
Author: Richard P. Shefferson [aut, cre] , Johan Ehrlen [aut]
Maintainer: Richard P. Shefferson <cdorm@g.ecc.u-tokyo.ac.jp>

Diff between lefko3 versions 4.2.0 dated 2022-01-19 and 5.0.1 dated 2022-03-08

 lefko3-4.2.0/lefko3/src/MatrixEstimators.cpp     |only
 lefko3-4.2.0/lefko3/src/popchar.cpp              |only
 lefko3-4.2.0/lefko3/src/popdynamics.cpp          |only
 lefko3-5.0.1/lefko3/DESCRIPTION                  |   14 
 lefko3-5.0.1/lefko3/MD5                          |  151 
 lefko3-5.0.1/lefko3/NAMESPACE                    |    3 
 lefko3-5.0.1/lefko3/NEWS                         |   55 
 lefko3-5.0.1/lefko3/R/RcppExports.R              | 2584 ++++++++--
 lefko3-5.0.1/lefko3/R/datamanag.R                |  100 
 lefko3-5.0.1/lefko3/R/lefko3-package.R           |    1 
 lefko3-5.0.1/lefko3/R/matrixcreation.R           | 5694 ++++++++++++-----------
 lefko3-5.0.1/lefko3/R/modelselection.R           | 1288 -----
 lefko3-5.0.1/lefko3/R/popdyn.R                   |  135 
 lefko3-5.0.1/lefko3/inst/doc/Chapter1.Rmd        |    2 
 lefko3-5.0.1/lefko3/inst/doc/Chapter1.html       | 2191 +++++++-
 lefko3-5.0.1/lefko3/inst/doc/Chapter2.Rmd        |   15 
 lefko3-5.0.1/lefko3/inst/doc/Chapter2.html       | 1276 ++++-
 lefko3-5.0.1/lefko3/inst/doc/Chapter5.Rmd        |  155 
 lefko3-5.0.1/lefko3/inst/doc/Chapter5.html       | 1282 ++++-
 lefko3-5.0.1/lefko3/inst/doc/Chapter6.Rmd        |  127 
 lefko3-5.0.1/lefko3/inst/doc/Chapter6.html       | 1049 +++-
 lefko3-5.0.1/lefko3/inst/doc/Chapter8.Rmd        |  115 
 lefko3-5.0.1/lefko3/inst/doc/Chapter8.html       | 1157 +++-
 lefko3-5.0.1/lefko3/inst/doc/Chapter9.Rmd        |    2 
 lefko3-5.0.1/lefko3/inst/doc/Chapter9.html       |  461 +
 lefko3-5.0.1/lefko3/man/aflefko2.Rd              |  312 -
 lefko3-5.0.1/lefko3/man/arlefko2.Rd              |only
 lefko3-5.0.1/lefko3/man/f_projection3.Rd         |only
 lefko3-5.0.1/lefko3/man/flefko2.Rd               |  305 -
 lefko3-5.0.1/lefko3/man/flefko3.Rd               |  313 -
 lefko3-5.0.1/lefko3/man/fleslie.Rd               |  135 
 lefko3-5.0.1/lefko3/man/hist_null.Rd             |    9 
 lefko3-5.0.1/lefko3/man/historicalize3.Rd        |    9 
 lefko3-5.0.1/lefko3/man/lmean.Rd                 |    2 
 lefko3-5.0.1/lefko3/man/modelsearch.Rd           |    3 
 lefko3-5.0.1/lefko3/man/projection3.Rd           |   34 
 lefko3-5.0.1/lefko3/man/rlefko2.Rd               |   26 
 lefko3-5.0.1/lefko3/man/rlefko3.Rd               |   16 
 lefko3-5.0.1/lefko3/man/rleslie.Rd               |   15 
 lefko3-5.0.1/lefko3/man/sensitivity3.lefkoMat.Rd |   15 
 lefko3-5.0.1/lefko3/man/sensitivity3.list.Rd     |   18 
 lefko3-5.0.1/lefko3/man/slambda3.Rd              |   15 
 lefko3-5.0.1/lefko3/man/verticalize3.Rd          |   11 
 lefko3-5.0.1/lefko3/src/DataManagement.cpp       | 1973 +------
 lefko3-5.0.1/lefko3/src/RcppExports.cpp          |  811 +--
 lefko3-5.0.1/lefko3/src/matsndyn.cpp             |only
 lefko3-5.0.1/lefko3/vignettes/Ch5.15-1.png       |binary
 lefko3-5.0.1/lefko3/vignettes/Ch5.16-1.png       |binary
 lefko3-5.0.1/lefko3/vignettes/Ch5.19-1.png       |binary
 lefko3-5.0.1/lefko3/vignettes/Ch5.20-1.png       |binary
 lefko3-5.0.1/lefko3/vignettes/Ch5.21-1.png       |binary
 lefko3-5.0.1/lefko3/vignettes/Ch5.25-1.png       |binary
 lefko3-5.0.1/lefko3/vignettes/Ch5.26-1.png       |binary
 lefko3-5.0.1/lefko3/vignettes/Ch5.29-1.png       |only
 lefko3-5.0.1/lefko3/vignettes/Ch6.12-1.png       |binary
 lefko3-5.0.1/lefko3/vignettes/Ch6.13-1.png       |binary
 lefko3-5.0.1/lefko3/vignettes/Ch6.16-1.png       |binary
 lefko3-5.0.1/lefko3/vignettes/Ch6.18-1.png       |binary
 lefko3-5.0.1/lefko3/vignettes/Ch6.21-1.png       |binary
 lefko3-5.0.1/lefko3/vignettes/Ch6.22-1.png       |binary
 lefko3-5.0.1/lefko3/vignettes/Ch8.12-1.png       |binary
 lefko3-5.0.1/lefko3/vignettes/Ch8.15-1.png       |binary
 lefko3-5.0.1/lefko3/vignettes/Ch8.16-1.png       |binary
 lefko3-5.0.1/lefko3/vignettes/Ch8.17-1.png       |binary
 lefko3-5.0.1/lefko3/vignettes/Ch8.20-1.png       |binary
 lefko3-5.0.1/lefko3/vignettes/Ch8.21-1.png       |binary
 lefko3-5.0.1/lefko3/vignettes/Ch8.25-1.png       |binary
 lefko3-5.0.1/lefko3/vignettes/Ch8.26-1.png       |binary
 lefko3-5.0.1/lefko3/vignettes/Chapter1.Rmd       |    2 
 lefko3-5.0.1/lefko3/vignettes/Chapter2.Rmd       |   15 
 lefko3-5.0.1/lefko3/vignettes/Chapter2.Rmd.orig  |   14 
 lefko3-5.0.1/lefko3/vignettes/Chapter5.Rmd       |  155 
 lefko3-5.0.1/lefko3/vignettes/Chapter5.Rmd.orig  |  100 
 lefko3-5.0.1/lefko3/vignettes/Chapter6.Rmd       |  127 
 lefko3-5.0.1/lefko3/vignettes/Chapter6.Rmd.orig  |   66 
 lefko3-5.0.1/lefko3/vignettes/Chapter8.Rmd       |  115 
 lefko3-5.0.1/lefko3/vignettes/Chapter8.Rmd.orig  |   60 
 lefko3-5.0.1/lefko3/vignettes/Chapter9.Rmd       |    2 
 lefko3-5.0.1/lefko3/vignettes/Chapter9.Rmd.orig  |    2 
 lefko3-5.0.1/lefko3/vignettes/Lefko3Tutorial.bib |   50 
 80 files changed, 13720 insertions(+), 8867 deletions(-)

More information about lefko3 at CRAN
Permanent link

Package IGoRRR updated to version 0.3.1 with previous version 0.3.0 dated 2022-02-25

Title: A Shiny Interface for Simple Data Management
Description: Launches a shiny application generating code to view tables in several ways, import/export tables, modify tables, make some basic graphics. 'IGoR' is a graphic user interface designed to help beginners using simple functions around table management and exploration. Inspired by 'Rcmdr', 'IGoR' is a code generator that, with simple inputs under a Shiny application, provides R code mainly built around the 'tidyverse' or some packages in the direct line of the Mosaic project: the 'rio' and 'ggformula' packages. The generated code doesn't depend on IGoR and can be manually modified by the user or copied elsewhere.
Author: Jean-Luc Lipatz [aut, cre], Bernard Gestin [ctb]
Maintainer: Jean-Luc Lipatz <jllipatz@protonmail.com>

Diff between IGoRRR versions 0.3.0 dated 2022-02-25 and 0.3.1 dated 2022-03-08

 DESCRIPTION            |    8 +++----
 MD5                    |   33 +++++++++++++++--------------
 R/common.R             |    8 ++++++-
 R/go.R                 |   15 +++++++++++--
 R/init.R               |   11 ++++++++-
 R/page_cut.R           |    2 -
 R/page_edit.R          |    2 -
 R/page_gather.R        |    2 -
 R/page_import.R        |   11 +++++++--
 R/page_maps.R          |   10 ++------
 R/page_reclass.R       |   45 ++++++++++++++++++++++++----------------
 R/page_summarise.R     |    2 -
 R/page_tables.R        |    2 +
 R/page_tabular.R       |    2 -
 R/page_union.R         |    5 +---
 inst/images/R_logo.png |only
 inst/misc/news.txt     |   14 ++++++++++++
 inst/text/FR.json      |   55 +++++++++++++++++++++++++++++++------------------
 18 files changed, 147 insertions(+), 80 deletions(-)

More information about IGoRRR at CRAN
Permanent link

Package asteRisk updated to version 1.4.0 with previous version 1.3.0 dated 2022-02-07

Title: Computation of Satellite Position
Description: Provides basic functionalities to calculate the position of satellites given a known state vector. The package includes implementations of the SGP4 and SDP4 simplified perturbation models to propagate orbital state vectors, as well as utilities to read TLE files and convert coordinates between different frames of reference. Several of the functionalities of the package (including the high-precision numerical orbit propagator) require the coefficients and data included in the 'asteRiskData' package, available in a 'drat' repository. To install this data package, run 'install.packages("asteRiskData", repos="https://rafael-ayala.github.io/drat/")'. Felix R. Hoots, Ronald L. Roehrich and T.S. Kelso (1988) <https://celestrak.com/NORAD/documentation/spacetrk.pdf>. David Vallado, Paul Crawford, Richard Hujsak and T.S. Kelso (2012) <doi:10.2514/6.2006-6753>. Felix R. Hoots, Paul W. Schumacher Jr. and Robert A. Glover (2014) <doi:10.2514/1.9161>.
Author: Rafael Ayala [aut, cre] , Daniel Ayala [aut] , David Ruiz [aut] , Lara Selles Vidal [aut]
Maintainer: Rafael Ayala <rafael.ayala@oist.jp>

Diff between asteRisk versions 1.3.0 dated 2022-02-07 and 1.4.0 dated 2022-03-08

 DESCRIPTION                                       |    6 
 MD5                                               |   39 
 NAMESPACE                                         |    3 
 NEWS                                              |    5 
 R/RcppExports.R                                   |    4 
 R/constants.R                                     |   12 
 R/coordinatesTransformations_auxiliaryFunctions.R |    6 
 R/fileParsers.R                                   |    5 
 R/hpop.R                                          |  119 ++
 R/hpop_acceleration.R                             |  406 +++++----
 R/hpop_auxiliaryFunctions.R                       |  251 ++++-
 R/utils.R                                         |   18 
 inst/doc/asteRisk.R                               |    2 
 inst/doc/asteRisk.Rmd                             |    2 
 inst/doc/asteRisk.html                            |    8 
 man/JPLephemerides.Rd                             |only
 man/hpop.Rd                                       |   83 +
 man/readTLE.Rd                                    |    3 
 src/RcppExports.cpp                               |   12 
 src/utils.cpp                                     |  945 ++++++++++++++++++++++
 vignettes/asteRisk.Rmd                            |    2 
 21 files changed, 1668 insertions(+), 263 deletions(-)

More information about asteRisk at CRAN
Permanent link

Package FuzzyResampling updated to version 0.4.1 with previous version 0.4.0 dated 2022-01-05

Title: Resampling Methods for Triangular and Trapezoidal Fuzzy Numbers
Description: The classical (i.e. Efron's, see Efron and Tibshirani (1994, ISBN:978-0412042317) "An Introduction to the Bootstrap") bootstrap is widely used for both the real (i.e. "crisp") and fuzzy data. The main aim of the algorithms implemented in this package is to overcome a problem with repetition of a few distinct values and to create fuzzy numbers, which are "similar" (but not the same) to values from the initial sample. To do this, different characteristics of triangular/trapezoidal numbers are kept (like the value, the ambiguity, etc., see Grzegorzewski et al. <doi:10.2991/eusflat-19.2019.68>, Grzegorzewski et al. (2020) <doi:10.2991/ijcis.d.201012.003>, Grzegorzewski et al. (2020) <doi:10.34768/amcs-2020-0022>, Grzegorzewski and Romaniuk (2022) <doi:10.1007/978-3-030-95929-6_3>, Romaniuk and Hryniewicz (2019) <doi:10.1007/s00500-018-3251-5>). Some additional procedures related to these resampling methods are also provided, like calculation of the Bertoluzza et al.'s distance (aka the mid/spread distance, see Bertoluzza et al. (1995) "On a new class of distances between fuzzy numbers") and estimation of the p-value of the one-sample bootstrapped test for the mean (see Lubiano et al. (2016, <doi:10.1016/j.ejor.2015.11.016>)). Additionally, there are procedures which randomly generate trapezoidal fuzzy numbers using some well-known statistical distributions.
Author: Maciej Romaniuk [cre], Przemyslaw Grzegorzewski [aut], Olgierd Hryniewicz [aut]
Maintainer: Maciej Romaniuk <mroman@ibspan.waw.pl>

Diff between FuzzyResampling versions 0.4.0 dated 2022-01-05 and 0.4.1 dated 2022-03-08

 DESCRIPTION                    |    8 ++++----
 MD5                            |   16 ++++++++--------
 NEWS.md                        |    5 +++++
 R/SEResamplingMean.R           |    5 +++--
 R/VAAmethod.R                  |    7 ++++---
 README.md                      |   26 ++++++++++++++++----------
 man/FuzzyResampling-package.Rd |    2 +-
 man/SEResamplingMean.Rd        |    5 +++--
 man/VAAmethod.Rd               |    7 ++++---
 9 files changed, 48 insertions(+), 33 deletions(-)

More information about FuzzyResampling at CRAN
Permanent link

Package flow updated to version 0.1.0 with previous version 0.0.2 dated 2021-08-13

Title: View and Browse Code Using Flow Diagrams
Description: Visualize as flow diagrams the logic of functions, expressions or scripts in a static way or when running a call, and ease debugging. Advanced features include analogs to 'debug' and 'debugonce' to target specific functions to draw, an utility to draw the calls used in the tests of the package in a markdown report, and an utility to draw all the functions of one package in a markdown report.
Author: Antoine Fabri [aut, cre]
Maintainer: Antoine Fabri <antoine.fabri@gmail.com>

Diff between flow versions 0.0.2 dated 2021-08-13 and 0.1.0 dated 2022-03-08

 flow-0.0.2/flow/inst/doc/V01_simple_usage.R                       |only
 flow-0.0.2/flow/inst/doc/V01_simple_usage.Rmd                     |only
 flow-0.0.2/flow/inst/doc/V01_simple_usage.html                    |only
 flow-0.0.2/flow/inst/doc/V02_export_diagrams.R                    |only
 flow-0.0.2/flow/inst/doc/V02_export_diagrams.Rmd                  |only
 flow-0.0.2/flow/inst/doc/V02_export_diagrams.html                 |only
 flow-0.0.2/flow/vignettes/V01_simple_usage.Rmd                    |only
 flow-0.0.2/flow/vignettes/V02_export_diagrams.Rmd                 |only
 flow-0.1.0/flow/DESCRIPTION                                       |   17 
 flow-0.1.0/flow/MD5                                               |  146 +-
 flow-0.1.0/flow/NAMESPACE                                         |   52 
 flow-0.1.0/flow/NEWS.md                                           |  119 +-
 flow-0.1.0/flow/R/01_0_flow_data.R                                |  268 ++--
 flow-0.1.0/flow/R/01_1_0_add_data_from_expr.R                     |   52 
 flow-0.1.0/flow/R/01_1_1_buid_blocks.R                            |  138 +-
 flow-0.1.0/flow/R/01_1_2_add_data_from_standard_block.R           |   68 -
 flow-0.1.0/flow/R/01_1_3_add_data_from_if_block.R                 |  304 ++---
 flow-0.1.0/flow/R/01_1_4_add_data_from_for_block.R                |  106 -
 flow-0.1.0/flow/R/01_1_5_add_data_from_while_block.R              |  108 -
 flow-0.1.0/flow/R/01_1_6_add_data_from_repeat_block.R             |   96 -
 flow-0.1.0/flow/R/01_1_7_data_building_utils.R                    |   86 -
 flow-0.1.0/flow/R/02_build_nomnoml_code.R                         |  344 ++---
 flow-0.1.0/flow/R/03_0_flow_view.R                                |  224 +--
 flow-0.1.0/flow/R/03_1_flow_view_nomnoml.R                        |  125 +-
 flow-0.1.0/flow/R/03_2_0_flow_view_plantuml.R                     |  244 ++--
 flow-0.1.0/flow/R/03_2_1_build_plantuml_code.R                    |  326 ++---
 flow-0.1.0/flow/R/03_2_2_plantuml_utils.R                         |  158 +-
 flow-0.1.0/flow/R/04_0_flow_run.R                                 |  372 +++---
 flow-0.1.0/flow/R/04_1_flow_run_utils.R                           |  406 +++----
 flow-0.1.0/flow/R/05_flow_debug.R                                 |  178 +--
 flow-0.1.0/flow/R/06_flow_doc.R                                   |  574 ++++-----
 flow-0.1.0/flow/R/07_C.R                                          |  545 ++++-----
 flow-0.1.0/flow/R/08_flow_test.R                                  |  508 ++++----
 flow-0.1.0/flow/R/09_flow_view_deps.R                             |only
 flow-0.1.0/flow/R/10_flow_view_vars.R                             |only
 flow-0.1.0/flow/R/11_flow_view_shiny.R                            |only
 flow-0.1.0/flow/R/20_addin.R                                      |   98 -
 flow-0.1.0/flow/R/30_utils.R                                      |  579 ++++++----
 flow-0.1.0/flow/R/flow-package.R                                  |only
 flow-0.1.0/flow/R/zz.R                                            |   52 
 flow-0.1.0/flow/README.md                                         |  137 +-
 flow-0.1.0/flow/build/vignette.rds                                |binary
 flow-0.1.0/flow/inst/doc/addins.R                                 |only
 flow-0.1.0/flow/inst/doc/addins.Rmd                               |only
 flow-0.1.0/flow/inst/doc/addins.html                              |only
 flow-0.1.0/flow/inst/doc/advanced-debugging.R                     |only
 flow-0.1.0/flow/inst/doc/advanced-debugging.Rmd                   |only
 flow-0.1.0/flow/inst/doc/advanced-debugging.html                  |only
 flow-0.1.0/flow/inst/doc/customize.R                              |only
 flow-0.1.0/flow/inst/doc/customize.Rmd                            |only
 flow-0.1.0/flow/inst/doc/customize.html                           |only
 flow-0.1.0/flow/inst/doc/experimental-functions.R                 |only
 flow-0.1.0/flow/inst/doc/experimental-functions.Rmd               |only
 flow-0.1.0/flow/inst/doc/experimental-functions.html              |only
 flow-0.1.0/flow/inst/doc/export-diagrams.R                        |only
 flow-0.1.0/flow/inst/doc/export-diagrams.Rmd                      |only
 flow-0.1.0/flow/inst/doc/export-diagrams.html                     |only
 flow-0.1.0/flow/inst/doc/nested-functions.R                       |only
 flow-0.1.0/flow/inst/doc/nested-functions.Rmd                     |only
 flow-0.1.0/flow/inst/doc/nested-functions.html                    |only
 flow-0.1.0/flow/inst/doc/reports.R                                |only
 flow-0.1.0/flow/inst/doc/reports.Rmd                              |only
 flow-0.1.0/flow/inst/doc/reports.html                             |only
 flow-0.1.0/flow/inst/doc/simple-usage.R                           |only
 flow-0.1.0/flow/inst/doc/simple-usage.Rmd                         |only
 flow-0.1.0/flow/inst/doc/simple-usage.html                        |only
 flow-0.1.0/flow/inst/rstudio/addins.dcf                           |   20 
 flow-0.1.0/flow/man/figures/lifecycle-archived.svg                |only
 flow-0.1.0/flow/man/figures/lifecycle-defunct.svg                 |only
 flow-0.1.0/flow/man/figures/lifecycle-deprecated.svg              |only
 flow-0.1.0/flow/man/figures/lifecycle-experimental.svg            |only
 flow-0.1.0/flow/man/figures/lifecycle-maturing.svg                |only
 flow-0.1.0/flow/man/figures/lifecycle-questioning.svg             |only
 flow-0.1.0/flow/man/figures/lifecycle-stable.svg                  |only
 flow-0.1.0/flow/man/figures/lifecycle-superseded.svg              |only
 flow-0.1.0/flow/man/flow-package.Rd                               |only
 flow-0.1.0/flow/man/flow_debug.Rd                                 |  148 +-
 flow-0.1.0/flow/man/flow_doc.Rd                                   |  104 -
 flow-0.1.0/flow/man/flow_draw.Rd                                  |   60 -
 flow-0.1.0/flow/man/flow_test.Rd                                  |   90 -
 flow-0.1.0/flow/man/flow_view.Rd                                  |  166 +-
 flow-0.1.0/flow/man/flow_view_deps.Rd                             |only
 flow-0.1.0/flow/man/flow_view_shiny.Rd                            |only
 flow-0.1.0/flow/man/flow_view_vars.Rd                             |only
 flow-0.1.0/flow/tests/testthat.R                                  |    8 
 flow-0.1.0/flow/tests/testthat/_snaps/01_flow_data_input_types.md |  230 +--
 flow-0.1.0/flow/tests/testthat/_snaps/02_flow_data_if.md          |  398 +++---
 flow-0.1.0/flow/tests/testthat/_snaps/03_flow_data_loops.md       |  267 ++--
 flow-0.1.0/flow/tests/testthat/_snaps/04_flow_data_arguments.md   |  216 +--
 flow-0.1.0/flow/tests/testthat/test-01_flow_data_input_types.R    |  150 +-
 flow-0.1.0/flow/tests/testthat/test-02_flow_data_if.R             |  142 +-
 flow-0.1.0/flow/tests/testthat/test-03_flow_data_loops.R          |   98 -
 flow-0.1.0/flow/tests/testthat/test-04_flow_data_arguments.R      |  120 +-
 flow-0.1.0/flow/tests/testthat/test-05_flow_run.R                 |   34 
 flow-0.1.0/flow/vignettes/addins.Rmd                              |only
 flow-0.1.0/flow/vignettes/advanced-debugging.Rmd                  |only
 flow-0.1.0/flow/vignettes/customize.Rmd                           |only
 flow-0.1.0/flow/vignettes/experimental-functions.Rmd              |only
 flow-0.1.0/flow/vignettes/export-diagrams.Rmd                     |only
 flow-0.1.0/flow/vignettes/nested-functions.Rmd                    |only
 flow-0.1.0/flow/vignettes/reports.Rmd                             |only
 flow-0.1.0/flow/vignettes/simple-usage.Rmd                        |only
 102 files changed, 4457 insertions(+), 4224 deletions(-)

More information about flow at CRAN
Permanent link

Package DataEditR updated to version 0.1.5 with previous version 0.1.4 dated 2021-12-10

Title: An Interactive Editor for Viewing, Entering, Filtering & Editing Data
Description: An interactive editor built on 'rhandsontable' to allow the interactive viewing, entering, filtering and editing of data in R <https://dillonhammill.github.io/DataEditR/>.
Author: Dillon Hammill [aut, cre]
Maintainer: Dillon Hammill <Dillon.Hammill@anu.edu.au>

Diff between DataEditR versions 0.1.4 dated 2021-12-10 and 0.1.5 dated 2022-03-08

 DESCRIPTION             |   12 +--
 MD5                     |   30 ++++----
 NAMESPACE               |    2 
 NEWS.md                 |    6 +
 R/dataEdit.R            |   57 +++++++++++----
 R/dataInput.R           |  118 +++++++++++++++++++++++---------
 R/dataOutput.R          |    2 
 R/data_edit.R           |  150 ++++++++++++++++++++++++++--------------
 R/helpers.R             |   49 ++++++++-----
 README.md               |   10 +-
 inst/doc/DataEditR.R    |   18 ++++
 inst/doc/DataEditR.Rmd  |   20 ++++-
 inst/doc/DataEditR.html |   51 +++++--------
 man/dataEdit.Rd         |    6 +
 man/dataSync.Rd         |  176 ++++++++++++++++++++++++------------------------
 vignettes/DataEditR.Rmd |   20 ++++-
 16 files changed, 452 insertions(+), 275 deletions(-)

More information about DataEditR at CRAN
Permanent link

Package mlflow updated to version 1.24.0 with previous version 1.23.0 dated 2022-01-25

Title: Interface to 'MLflow'
Description: R interface to 'MLflow', open source platform for the complete machine learning life cycle, see <https://mlflow.org/>. This package supports installing 'MLflow', tracking experiments, creating and running projects, and saving and serving models.
Author: Matei Zaharia [aut, cre], Javier Luraschi [aut], Kevin Kuo [aut] , RStudio [cph]
Maintainer: Matei Zaharia <matei@databricks.com>

Diff between mlflow versions 1.23.0 dated 2022-01-25 and 1.24.0 dated 2022-03-08

 DESCRIPTION                 |    6 +++---
 MD5                         |   10 +++++-----
 R/install.R                 |    2 +-
 R/model.R                   |    2 +-
 R/python.R                  |    2 +-
 tests/testthat/test-model.R |   12 ++++++++++++
 6 files changed, 23 insertions(+), 11 deletions(-)

More information about mlflow at CRAN
Permanent link

Package pmetar updated to version 0.3.3 with previous version 0.3.2 dated 2021-11-04

Title: Processing METAR Weather Reports
Description: Allows to download current and historical METAR weather reports extract and parse basic parameters and present main weather information. Current reports are downloaded from Aviation Weather Center <https://www.aviationweather.gov/metar> and historical reports from Iowa Environmental Mesonet web page of Iowa State University ASOS-AWOS-METAR <http://mesonet.agron.iastate.edu/AWOS/>.
Author: Pawel Cwiek [aut, cre], David Megginson [ctb] , Greg Thompson [ctb]
Maintainer: Pawel Cwiek <prc.altodato@gmail.com>

Diff between pmetar versions 0.3.2 dated 2021-11-04 and 0.3.3 dated 2022-03-08

 DESCRIPTION                         |    6 
 MD5                                 |   16 -
 R/metar_airport.R                   |    5 
 R/metar_decode.R                    |    1 
 README.md                           |    2 
 inst/doc/pmetar.html                |  375 +++++++++++++++++++++++++++++++-----
 man/metar_airport.Rd                |    1 
 man/metar_decode.Rd                 |    1 
 tests/testthat/test_metar_airport.R |   22 +-
 9 files changed, 353 insertions(+), 76 deletions(-)

More information about pmetar at CRAN
Permanent link

Package multimark updated to version 2.1.4 with previous version 2.1.3 dated 2021-09-15

Title: Capture-Mark-Recapture Analysis using Multiple Non-Invasive Marks
Description: Traditional and spatial capture-mark-recapture analysis with multiple non-invasive marks. The models implemented in 'multimark' combine encounter history data arising from two different non-invasive "marks", such as images of left-sided and right-sided pelage patterns of bilaterally asymmetrical species, to estimate abundance and related demographic parameters while accounting for imperfect detection. Bayesian models are specified using simple formulae and fitted using Markov chain Monte Carlo. Addressing deficiencies in currently available software, 'multimark' also provides a user-friendly interface for performing Bayesian multimodel inference using non-spatial or spatial capture-recapture data consisting of a single conventional mark or multiple non-invasive marks. See McClintock (2015) <doi:10.1002/ece3.1676> and Maronde et al. (2020) <doi:10.1002/ece3.6990>.
Author: Brett T. McClintock [aut, cre], Acho Arnold [ctb, cph] , Barry Brown [ctb] , James Lovato [ctb] , John Burkardt [ctb] , Cleve Moler [ctb] , Arjun Gopalaswamy [ctb]
Maintainer: Brett T. McClintock <brett.mcclintock@noaa.gov>

Diff between multimark versions 2.1.3 dated 2021-09-15 and 2.1.4 dated 2022-03-08

 DESCRIPTION  |   10 ++++-----
 MD5          |    6 ++---
 NEWS         |    7 ++++++
 src/ranlib.c |   63 +++++++++++++++++++++++++++++------------------------------
 4 files changed, 46 insertions(+), 40 deletions(-)

More information about multimark at CRAN
Permanent link

Package jSDM updated to version 0.2.0 with previous version 0.1.0 dated 2019-07-02

Title: Joint Species Distribution Models
Description: Fits joint species distribution models ('jSDM') in a hierarchical Bayesian framework (Warton et al. 2015 <doi:10.1016/j.tree.2015.09.007>). The Gibbs sampler is written in C++. It uses 'Rcpp', 'Armadillo' and 'GSL' to maximize computation efficiency.
Author: Jeanne Clément [aut, cre] , Ghislain Vieilledent [aut] , Frédéric Gosselin [ctb] , CIRAD [cph, fnd]
Maintainer: Jeanne Clément <jeanne.clement16@laposte.net>

Diff between jSDM versions 0.1.0 dated 2019-07-02 and 0.2.0 dated 2022-03-08

 jSDM-0.1.0/jSDM/R/jSDM_binomial.R                                                  |only
 jSDM-0.1.0/jSDM/R/jSDM_probit_block.R                                              |only
 jSDM-0.1.0/jSDM/man/jSDM_binomial.Rd                                               |only
 jSDM-0.1.0/jSDM/man/jSDM_probit_block.Rd                                           |only
 jSDM-0.1.0/jSDM/src/Rcpp_jSDM_binomial.cpp                                         |only
 jSDM-0.1.0/jSDM/src/Rcpp_jSDM_probit_block.cpp                                     |only
 jSDM-0.1.0/jSDM/tests/testthat/test-jSDM_binomial.R                                |only
 jSDM-0.1.0/jSDM/tests/testthat/test-jSDM_probit_block.R                            |only
 jSDM-0.2.0/jSDM/DESCRIPTION                                                        |   43 
 jSDM-0.2.0/jSDM/MD5                                                                |  164 -
 jSDM-0.2.0/jSDM/NAMESPACE                                                          |   53 
 jSDM-0.2.0/jSDM/NEWS.md                                                            |   24 
 jSDM-0.2.0/jSDM/R/RcppExports.R                                                    |  192 +
 jSDM-0.2.0/jSDM/R/get_enviro_cor.R                                                 |only
 jSDM-0.2.0/jSDM/R/get_residual_cor.R                                               |  175 +
 jSDM-0.2.0/jSDM/R/hidden.R                                                         |  299 +-
 jSDM-0.2.0/jSDM/R/jSDM-package.R                                                   |only
 jSDM-0.2.0/jSDM/R/jSDM_binomial_logit.R                                            |only
 jSDM-0.2.0/jSDM/R/jSDM_binomial_probit.R                                           |only
 jSDM-0.2.0/jSDM/R/jSDM_binomial_probit_long_format.R                               |only
 jSDM-0.2.0/jSDM/R/jSDM_binomial_probit_sp_constrained.R                            |only
 jSDM-0.2.0/jSDM/R/jSDM_poisson_log.R                                               |only
 jSDM-0.2.0/jSDM/R/logit.R                                                          |   43 
 jSDM-0.2.0/jSDM/R/plot_associations.R                                              |only
 jSDM-0.2.0/jSDM/R/plot_residual_cor.R                                              |   99 
 jSDM-0.2.0/jSDM/R/predict.jSDM.R                                                   |  469 ++-
 jSDM-0.2.0/jSDM/R/zzz.R                                                            |   21 
 jSDM-0.2.0/jSDM/README.md                                                          |   54 
 jSDM-0.2.0/jSDM/build/partial.rdb                                                  |only
 jSDM-0.2.0/jSDM/build/vignette.rds                                                 |binary
 jSDM-0.2.0/jSDM/cleanup                                                            |    2 
 jSDM-0.2.0/jSDM/data/aravo.rda                                                     |only
 jSDM-0.2.0/jSDM/data/birds.rda                                                     |only
 jSDM-0.2.0/jSDM/data/eucalypts.rda                                                 |only
 jSDM-0.2.0/jSDM/data/fungi.rda                                                     |only
 jSDM-0.2.0/jSDM/data/mites.rda                                                     |only
 jSDM-0.2.0/jSDM/data/mosquitos.rda                                                 |only
 jSDM-0.2.0/jSDM/inst/doc/jSDM.R                                                    |  133 
 jSDM-0.2.0/jSDM/inst/doc/jSDM.Rmd                                                  |  322 +-
 jSDM-0.2.0/jSDM/inst/doc/jSDM.html                                                 | 1147 ++++----
 jSDM-0.2.0/jSDM/inst/doc/proof.R                                                   |only
 jSDM-0.2.0/jSDM/inst/doc/proof.Rmd                                                 |only
 jSDM-0.2.0/jSDM/inst/doc/proof.html                                                |only
 jSDM-0.2.0/jSDM/man/aravo.Rd                                                       |only
 jSDM-0.2.0/jSDM/man/birds.Rd                                                       |only
 jSDM-0.2.0/jSDM/man/eucalypts.Rd                                                   |only
 jSDM-0.2.0/jSDM/man/frogs.Rd                                                       |    6 
 jSDM-0.2.0/jSDM/man/fungi.Rd                                                       |only
 jSDM-0.2.0/jSDM/man/get_enviro_cor.Rd                                              |only
 jSDM-0.2.0/jSDM/man/get_residual_cor.Rd                                            |  137 
 jSDM-0.2.0/jSDM/man/inv_logit.Rd                                                   |only
 jSDM-0.2.0/jSDM/man/jSDM-package.Rd                                                |  127 
 jSDM-0.2.0/jSDM/man/jSDM_binomial_logit.Rd                                         |only
 jSDM-0.2.0/jSDM/man/jSDM_binomial_probit.Rd                                        |only
 jSDM-0.2.0/jSDM/man/jSDM_binomial_probit_long_format.Rd                            |only
 jSDM-0.2.0/jSDM/man/jSDM_binomial_probit_sp_constrained.Rd                         |only
 jSDM-0.2.0/jSDM/man/jSDM_poisson_log.Rd                                            |only
 jSDM-0.2.0/jSDM/man/logit.Rd                                                       |   62 
 jSDM-0.2.0/jSDM/man/mites.Rd                                                       |only
 jSDM-0.2.0/jSDM/man/mosquitos.Rd                                                   |only
 jSDM-0.2.0/jSDM/man/plot_associations.Rd                                           |only
 jSDM-0.2.0/jSDM/man/plot_residual_cor.Rd                                           |  124 
 jSDM-0.2.0/jSDM/man/predict.jSDM.Rd                                                |  128 
 jSDM-0.2.0/jSDM/src/RcppExports.cpp                                                | 1386 +++++++++-
 jSDM-0.2.0/jSDM/src/Rcpp_jSDM_binomial_logit.cpp                                   |only
 jSDM-0.2.0/jSDM/src/Rcpp_jSDM_binomial_logit_fixed_site.cpp                        |only
 jSDM-0.2.0/jSDM/src/Rcpp_jSDM_binomial_logit_fixed_site_lv.cpp                     |only
 jSDM-0.2.0/jSDM/src/Rcpp_jSDM_binomial_logit_lv.cpp                                |only
 jSDM-0.2.0/jSDM/src/Rcpp_jSDM_binomial_logit_rand_site.cpp                         |only
 jSDM-0.2.0/jSDM/src/Rcpp_jSDM_binomial_logit_rand_site_lv.cpp                      |only
 jSDM-0.2.0/jSDM/src/Rcpp_jSDM_binomial_logit_traits.cpp                            |only
 jSDM-0.2.0/jSDM/src/Rcpp_jSDM_binomial_logit_traits_fixed_site.cpp                 |only
 jSDM-0.2.0/jSDM/src/Rcpp_jSDM_binomial_logit_traits_fixed_site_lv.cpp              |only
 jSDM-0.2.0/jSDM/src/Rcpp_jSDM_binomial_logit_traits_lv.cpp                         |only
 jSDM-0.2.0/jSDM/src/Rcpp_jSDM_binomial_logit_traits_rand_site.cpp                  |only
 jSDM-0.2.0/jSDM/src/Rcpp_jSDM_binomial_logit_traits_rand_site_lv.cpp               |only
 jSDM-0.2.0/jSDM/src/Rcpp_jSDM_binomial_probit.cpp                                  |only
 jSDM-0.2.0/jSDM/src/Rcpp_jSDM_binomial_probit_fixed_site.cpp                       |only
 jSDM-0.2.0/jSDM/src/Rcpp_jSDM_binomial_probit_fixed_site_long_format.cpp           |only
 jSDM-0.2.0/jSDM/src/Rcpp_jSDM_binomial_probit_fixed_site_lv.cpp                    |only
 jSDM-0.2.0/jSDM/src/Rcpp_jSDM_binomial_probit_fixed_site_lv_long_format.cpp        |only
 jSDM-0.2.0/jSDM/src/Rcpp_jSDM_binomial_probit_long_format.cpp                      |only
 jSDM-0.2.0/jSDM/src/Rcpp_jSDM_binomial_probit_lv.cpp                               |only
 jSDM-0.2.0/jSDM/src/Rcpp_jSDM_binomial_probit_lv_long_format.cpp                   |only
 jSDM-0.2.0/jSDM/src/Rcpp_jSDM_binomial_probit_rand_site.cpp                        |only
 jSDM-0.2.0/jSDM/src/Rcpp_jSDM_binomial_probit_rand_site_long_format.cpp            |only
 jSDM-0.2.0/jSDM/src/Rcpp_jSDM_binomial_probit_rand_site_lv.cpp                     |only
 jSDM-0.2.0/jSDM/src/Rcpp_jSDM_binomial_probit_rand_site_lv_long_format.cpp         |only
 jSDM-0.2.0/jSDM/src/Rcpp_jSDM_binomial_probit_traits.cpp                           |only
 jSDM-0.2.0/jSDM/src/Rcpp_jSDM_binomial_probit_traits_fixed_site.cpp                |only
 jSDM-0.2.0/jSDM/src/Rcpp_jSDM_binomial_probit_traits_fixed_site_long_format.cpp    |only
 jSDM-0.2.0/jSDM/src/Rcpp_jSDM_binomial_probit_traits_fixed_site_lv.cpp             |only
 jSDM-0.2.0/jSDM/src/Rcpp_jSDM_binomial_probit_traits_fixed_site_lv_long_format.cpp |only
 jSDM-0.2.0/jSDM/src/Rcpp_jSDM_binomial_probit_traits_long_format.cpp               |only
 jSDM-0.2.0/jSDM/src/Rcpp_jSDM_binomial_probit_traits_lv.cpp                        |only
 jSDM-0.2.0/jSDM/src/Rcpp_jSDM_binomial_probit_traits_lv_long_format.cpp            |only
 jSDM-0.2.0/jSDM/src/Rcpp_jSDM_binomial_probit_traits_rand_site.cpp                 |only
 jSDM-0.2.0/jSDM/src/Rcpp_jSDM_binomial_probit_traits_rand_site_long_format.cpp     |only
 jSDM-0.2.0/jSDM/src/Rcpp_jSDM_binomial_probit_traits_rand_site_lv.cpp              |only
 jSDM-0.2.0/jSDM/src/Rcpp_jSDM_binomial_probit_traits_rand_site_lv_long_format.cpp  |only
 jSDM-0.2.0/jSDM/src/Rcpp_jSDM_poisson_log.cpp                                      |only
 jSDM-0.2.0/jSDM/src/Rcpp_jSDM_poisson_log_fixed_site.cpp                           |only
 jSDM-0.2.0/jSDM/src/Rcpp_jSDM_poisson_log_fixed_site_lv.cpp                        |only
 jSDM-0.2.0/jSDM/src/Rcpp_jSDM_poisson_log_lv.cpp                                   |only
 jSDM-0.2.0/jSDM/src/Rcpp_jSDM_poisson_log_rand_site.cpp                            |only
 jSDM-0.2.0/jSDM/src/Rcpp_jSDM_poisson_log_rand_site_lv.cpp                         |only
 jSDM-0.2.0/jSDM/src/Rcpp_jSDM_poisson_log_traits.cpp                               |only
 jSDM-0.2.0/jSDM/src/Rcpp_jSDM_poisson_log_traits_fixed_site.cpp                    |only
 jSDM-0.2.0/jSDM/src/Rcpp_jSDM_poisson_log_traits_fixed_site_lv.cpp                 |only
 jSDM-0.2.0/jSDM/src/Rcpp_jSDM_poisson_log_traits_lv.cpp                            |only
 jSDM-0.2.0/jSDM/src/Rcpp_jSDM_poisson_log_traits_rand_site.cpp                     |only
 jSDM-0.2.0/jSDM/src/Rcpp_jSDM_poisson_log_traits_rand_site_lv.cpp                  |only
 jSDM-0.2.0/jSDM/src/Rcpp_jSDM_useful.cpp                                           |  526 +++
 jSDM-0.2.0/jSDM/src/Rcpp_jSDM_useful.h                                             |   48 
 jSDM-0.2.0/jSDM/tests/testthat/test-inv_logit.R                                    |only
 jSDM-0.2.0/jSDM/tests/testthat/test-jSDM_binomial_logit.R                          |only
 jSDM-0.2.0/jSDM/tests/testthat/test-jSDM_binomial_probit.R                         |only
 jSDM-0.2.0/jSDM/tests/testthat/test-jSDM_binomial_probit_long_format.R             |only
 jSDM-0.2.0/jSDM/tests/testthat/test-jSDM_binomial_probit_sp_constrained.R          |only
 jSDM-0.2.0/jSDM/tests/testthat/test-jSDM_poisson_log.R                             |only
 jSDM-0.2.0/jSDM/tests/testthat/test-logit.R                                        |    4 
 jSDM-0.2.0/jSDM/vignettes/bib/biblio-jSDM.bib                                      |  321 ++
 jSDM-0.2.0/jSDM/vignettes/figures/DAG-jSDM-rand.png                                |only
 jSDM-0.2.0/jSDM/vignettes/figures/Eucalyptus_.jpg                                  |only
 jSDM-0.2.0/jSDM/vignettes/figures/Frogs_.jpg                                       |only
 jSDM-0.2.0/jSDM/vignettes/figures/Fungi_.jpg                                       |only
 jSDM-0.2.0/jSDM/vignettes/figures/Litoria_ewingii.jpg                              |binary
 jSDM-0.2.0/jSDM/vignettes/figures/Mosquitos_.jpg                                   |only
 jSDM-0.2.0/jSDM/vignettes/figures/Oribatid_mites.jpg                               |only
 jSDM-0.2.0/jSDM/vignettes/figures/alpine_plants.png                                |only
 jSDM-0.2.0/jSDM/vignettes/figures/birds.jpg                                        |only
 jSDM-0.2.0/jSDM/vignettes/figures/des.jpg                                          |only
 jSDM-0.2.0/jSDM/vignettes/figures/oribatid-mites.png                               |only
 jSDM-0.2.0/jSDM/vignettes/figures/swiss_breeding_birds_atlas.jpg                   |only
 jSDM-0.2.0/jSDM/vignettes/jSDM.Rmd                                                 |  322 +-
 jSDM-0.2.0/jSDM/vignettes/proof.Rmd                                                |only
 136 files changed, 5065 insertions(+), 1366 deletions(-)

More information about jSDM at CRAN
Permanent link

Package graph4lg updated to version 1.4.0 with previous version 1.2.0 dated 2021-03-16

Title: Build Graphs for Landscape Genetics Analysis
Description: Build graphs for landscape genetics analysis. This set of functions can be used to import and convert spatial and genetic data initially in different formats, import landscape graphs created with 'GRAPHAB' software (Foltete et al., 2012) <doi:10.1016/j.envsoft.2012.07.002>, make diagnosis plots of isolation by distance relationships in order to choose how to build genetic graphs, create graphs with a large range of pruning methods, weight their links with several genetic distances, plot and analyse graphs, compare them with other graphs. It uses functions from other packages such as 'adegenet' (Jombart, 2008) <doi:10.1093/bioinformatics/btn129> and 'igraph' (Csardi et Nepusz, 2006) <https://igraph.org/>. It also implements methods commonly used in landscape genetics to create graphs, described by Dyer et Nason (2004) <doi:10.1111/j.1365-294X.2004.02177.x> and Greenbaum et Fefferman (2017) <doi:10.1111/mec.14059>, and to analyse distance data (van Strien et al., 2015) <doi:10.1038/hdy.2014.62>.
Author: Paul Savary [aut, cre] , Gilles Vuidel [ctb] , Tyler Rudolph [ctb]
Maintainer: Paul Savary <psavary@protonmail.com>

Diff between graph4lg versions 1.2.0 dated 2021-03-16 and 1.4.0 dated 2022-03-08

 DESCRIPTION                           |   34 
 MD5                                   |  100 +-
 NAMESPACE                             |    4 
 NEWS.md                               |   29 
 R/check_merge.R                       |only
 R/compute_graph_modul.R               |    2 
 R/convert_cd.R                        |   14 
 R/genepop_to_genind.R                 |   91 +-
 R/genind_to_genepop.R                 |   25 
 R/genind_to_structure.R               |only
 R/get_graphab.R                       |    6 
 R/get_graphab_linkset.R               |   42 
 R/get_graphab_linkset_cost.R          |   64 -
 R/get_graphab_metric.R                |   36 
 R/get_graphab_raster_codes.R          |   36 
 R/graph_plot_compar.R                 |   10 
 R/graphab_capacity.R                  |  807 +++++++++---------
 R/graphab_corridor.R                  |only
 R/graphab_graph.R                     |   75 -
 R/graphab_link.R                      |  516 ++++++-----
 R/graphab_metric.R                    |  897 +++++++++++---------
 R/graphab_modul.R                     |   59 -
 R/graphab_pointset.R                  |  724 ++++++++--------
 R/graphab_project.R                   |  417 +++++----
 R/graphab_project_desc.R              |  113 ++
 R/graphab_to_igraph.R                 |   65 -
 R/link_compar.R                       |   52 -
 R/mat_pw_fst.R                        |  250 ++---
 R/plot_graph_lg.R                     |   16 
 R/pop_rare_gen_index.R                |only
 build/partial.rdb                     |binary
 build/vignette.rds                    |binary
 inst/doc/genetic_graph_2.R            |  428 ++++-----
 inst/doc/genetic_graph_2.html         | 1416 ++++++++++++++------------------
 inst/doc/graph_comparisons_4.R        |  290 +++---
 inst/doc/graph_comparisons_4.html     | 1075 ++++++++++--------------
 inst/doc/input_data_processing_1.R    |  292 +++---
 inst/doc/input_data_processing_1.html | 1485 +++++++++++++++-------------------
 inst/doc/landscape_graph_3.R          |  288 +++---
 inst/doc/landscape_graph_3.html       | 1406 ++++++++++++++------------------
 man/check_merge.Rd                    |only
 man/genind_to_structure.Rd            |only
 man/get_graphab.Rd                    |    2 
 man/get_graphab_linkset.Rd            |    4 
 man/get_graphab_metric.Rd             |    4 
 man/graphab_capacity.Rd               |   12 
 man/graphab_corridor.Rd               |only
 man/graphab_graph.Rd                  |    4 
 man/graphab_link.Rd                   |   15 
 man/graphab_metric.Rd                 |   17 
 man/graphab_modul.Rd                  |    4 
 man/graphab_pointset.Rd               |    4 
 man/graphab_project.Rd                |   20 
 man/graphab_project_desc.Rd           |    7 
 man/pop_rare_gen_index.Rd             |only
 55 files changed, 5430 insertions(+), 5827 deletions(-)

More information about graph4lg at CRAN
Permanent link

Package gdalcubes updated to version 0.6.0 with previous version 0.5.1 dated 2021-12-03

Title: Earth Observation Data Cubes from Satellite Image Collections
Description: Processing collections of Earth observation images as on-demand multispectral, multitemporal raster data cubes. Users define cubes by spatiotemporal extent, resolution, and spatial reference system and let 'gdalcubes' automatically apply cropping, reprojection, and resampling using the 'Geospatial Data Abstraction Library' ('GDAL'). Implemented functions on data cubes include reduction over space and time, applying arithmetic expressions on pixel band values, moving window aggregates over time, filtering by space, time, bands, and predicates on pixel values, exporting data cubes as 'netCDF' or 'GeoTIFF' files, plotting, and extraction from spatial and or spatiotemporal features. All computational parts are implemented in C++, linking to the 'GDAL', 'netCDF', 'CURL', and 'SQLite' libraries. See Appel and Pebesma (2019) <doi:10.3390/data4030092> for further details.
Author: Marius Appel [aut, cre] , Edzer Pebesma [ctb] , Roger Bivand [ctb], Jeroen Ooms [ctb] , Lewis Van Winkle [cph], Ole Christian Eidheim [cph], Howard Hinnant [cph], Adrian Colomitchi [cph], Florian Dang [cph], Paul Thompson [cph], Tomasz Kamiński [cph] [...truncated...]
Maintainer: Marius Appel <marius.appel@uni-muenster.de>

Diff between gdalcubes versions 0.5.1 dated 2021-12-03 and 0.6.0 dated 2022-03-08

 gdalcubes-0.5.1/gdalcubes/R/query_points.R                                                 |only
 gdalcubes-0.5.1/gdalcubes/R/query_timeseries.R                                             |only
 gdalcubes-0.5.1/gdalcubes/R/zonal_statistics.R                                             |only
 gdalcubes-0.5.1/gdalcubes/inst/doc/MODIS.R                                                 |only
 gdalcubes-0.5.1/gdalcubes/inst/doc/MODIS.Rmd                                               |only
 gdalcubes-0.5.1/gdalcubes/inst/doc/MODIS.html                                              |only
 gdalcubes-0.5.1/gdalcubes/man/query_points.Rd                                              |only
 gdalcubes-0.5.1/gdalcubes/man/query_timeseries.Rd                                          |only
 gdalcubes-0.5.1/gdalcubes/man/raster_cube_dummy.Rd                                         |only
 gdalcubes-0.5.1/gdalcubes/man/zonal_statistics.Rd                                          |only
 gdalcubes-0.5.1/gdalcubes/vignettes/MODIS.Rmd                                              |only
 gdalcubes-0.6.0/gdalcubes/DESCRIPTION                                                      |   18 
 gdalcubes-0.6.0/gdalcubes/MD5                                                              |  195 +-
 gdalcubes-0.6.0/gdalcubes/NAMESPACE                                                        |    8 
 gdalcubes-0.6.0/gdalcubes/NEWS.md                                                          |   19 
 gdalcubes-0.6.0/gdalcubes/R/RcppExports.R                                                  |  256 +--
 gdalcubes-0.6.0/gdalcubes/R/aggregate_time.R                                               |    6 
 gdalcubes-0.6.0/gdalcubes/R/animate.R                                                      |  134 -
 gdalcubes-0.6.0/gdalcubes/R/apply_pixel.R                                                  |    8 
 gdalcubes-0.6.0/gdalcubes/R/apply_time.R                                                   |    6 
 gdalcubes-0.6.0/gdalcubes/R/chunk_apply.R                                                  |    6 
 gdalcubes-0.6.0/gdalcubes/R/config.R                                                       |  181 +-
 gdalcubes-0.6.0/gdalcubes/R/crop.R                                                         |    6 
 gdalcubes-0.6.0/gdalcubes/R/cube.R                                                         |  140 +
 gdalcubes-0.6.0/gdalcubes/R/dummy.R                                                        |   58 
 gdalcubes-0.6.0/gdalcubes/R/extract.R                                                      |only
 gdalcubes-0.6.0/gdalcubes/R/fill_time.R                                                    |    4 
 gdalcubes-0.6.0/gdalcubes/R/filter_geom.R                                                  |    4 
 gdalcubes-0.6.0/gdalcubes/R/filter_pixel.R                                                 |    4 
 gdalcubes-0.6.0/gdalcubes/R/gdalcubes.R                                                    |    6 
 gdalcubes-0.6.0/gdalcubes/R/image_collection.R                                             |   18 
 gdalcubes-0.6.0/gdalcubes/R/join_bands.R                                                   |    4 
 gdalcubes-0.6.0/gdalcubes/R/ncdf_cube.R                                                    |    4 
 gdalcubes-0.6.0/gdalcubes/R/plot.R                                                         |    8 
 gdalcubes-0.6.0/gdalcubes/R/reduce.R                                                       |   16 
 gdalcubes-0.6.0/gdalcubes/R/rename_bands.R                                                 |    4 
 gdalcubes-0.6.0/gdalcubes/R/select_bands.R                                                 |    4 
 gdalcubes-0.6.0/gdalcubes/R/select_time.R                                                  |    4 
 gdalcubes-0.6.0/gdalcubes/R/slice.R                                                        |   12 
 gdalcubes-0.6.0/gdalcubes/R/stac.R                                                         |    4 
 gdalcubes-0.6.0/gdalcubes/R/view.R                                                         |    2 
 gdalcubes-0.6.0/gdalcubes/R/window.R                                                       |    6 
 gdalcubes-0.6.0/gdalcubes/R/zzz.R                                                          |   36 
 gdalcubes-0.6.0/gdalcubes/build/vignette.rds                                               |binary
 gdalcubes-0.6.0/gdalcubes/inst/CITATION                                                    |   13 
 gdalcubes-0.6.0/gdalcubes/inst/doc/gc01_MODIS.R                                            |only
 gdalcubes-0.6.0/gdalcubes/inst/doc/gc01_MODIS.Rmd                                          |only
 gdalcubes-0.6.0/gdalcubes/inst/doc/gc01_MODIS.html                                         |only
 gdalcubes-0.6.0/gdalcubes/inst/scripts                                                     |only
 gdalcubes-0.6.0/gdalcubes/inst/tinytest                                                    |only
 gdalcubes-0.6.0/gdalcubes/man/animate.Rd                                                   |   23 
 gdalcubes-0.6.0/gdalcubes/man/dot-copy_cube.Rd                                             |    2 
 gdalcubes-0.6.0/gdalcubes/man/extract_geom.Rd                                              |only
 gdalcubes-0.6.0/gdalcubes/man/gdalcubes.Rd                                                 |    4 
 gdalcubes-0.6.0/gdalcubes/man/gdalcubes_options.Rd                                         |   40 
 gdalcubes-0.6.0/gdalcubes/man/gdalcubes_set_gdal_config.Rd                                 |only
 gdalcubes-0.6.0/gdalcubes/man/json_cube.Rd                                                 |only
 gdalcubes-0.6.0/gdalcubes/man/raster_cube.Rd                                               |   11 
 gdalcubes-0.6.0/gdalcubes/man/write_ncdf.Rd                                                |    2 
 gdalcubes-0.6.0/gdalcubes/man/write_tif.Rd                                                 |    2 
 gdalcubes-0.6.0/gdalcubes/src/Makevars.in                                                  |    4 
 gdalcubes-0.6.0/gdalcubes/src/Makevars.win                                                 |    6 
 gdalcubes-0.6.0/gdalcubes/src/RcppExports.cpp                                              |  713 ++++----
 gdalcubes-0.6.0/gdalcubes/src/error.cpp                                                    |only
 gdalcubes-0.6.0/gdalcubes/src/error.h                                                      |only
 gdalcubes-0.6.0/gdalcubes/src/gdalcubes.cpp                                                |  830 ++++------
 gdalcubes-0.6.0/gdalcubes/src/gdalcubes/src/apply_pixel.cpp                                |    2 
 gdalcubes-0.6.0/gdalcubes/src/gdalcubes/src/config.cpp                                     |   32 
 gdalcubes-0.6.0/gdalcubes/src/gdalcubes/src/config.h                                       |    4 
 gdalcubes-0.6.0/gdalcubes/src/gdalcubes/src/cube.cpp                                       |  747 +++++----
 gdalcubes-0.6.0/gdalcubes/src/gdalcubes/src/cube.h                                         |   36 
 gdalcubes-0.6.0/gdalcubes/src/gdalcubes/src/cube_factory.cpp                               |   21 
 gdalcubes-0.6.0/gdalcubes/src/gdalcubes/src/datetime.cpp                                   |   68 
 gdalcubes-0.6.0/gdalcubes/src/gdalcubes/src/datetime.h                                     |   12 
 gdalcubes-0.6.0/gdalcubes/src/gdalcubes/src/dummy.cpp                                      |   15 
 gdalcubes-0.6.0/gdalcubes/src/gdalcubes/src/dummy.h                                        |   67 
 gdalcubes-0.6.0/gdalcubes/src/gdalcubes/src/external/tiny-process-library/LICENSE          |    2 
 gdalcubes-0.6.0/gdalcubes/src/gdalcubes/src/external/tiny-process-library/process.cpp      |  100 -
 gdalcubes-0.6.0/gdalcubes/src/gdalcubes/src/external/tiny-process-library/process.hpp      |   55 
 gdalcubes-0.6.0/gdalcubes/src/gdalcubes/src/external/tiny-process-library/process_unix.cpp |  677 ++++----
 gdalcubes-0.6.0/gdalcubes/src/gdalcubes/src/external/tiny-process-library/process_win.cpp  |  612 +++----
 gdalcubes-0.6.0/gdalcubes/src/gdalcubes/src/extract_geom.cpp                               |only
 gdalcubes-0.6.0/gdalcubes/src/gdalcubes/src/extract_geom.h                                 |only
 gdalcubes-0.6.0/gdalcubes/src/gdalcubes/src/filesystem.cpp                                 |    8 
 gdalcubes-0.6.0/gdalcubes/src/gdalcubes/src/filesystem.h                                   |    2 
 gdalcubes-0.6.0/gdalcubes/src/gdalcubes/src/filter_geom.cpp                                |   45 
 gdalcubes-0.6.0/gdalcubes/src/gdalcubes/src/filter_pixel.cpp                               |    6 
 gdalcubes-0.6.0/gdalcubes/src/gdalcubes/src/gdalcubes.h                                    |    1 
 gdalcubes-0.6.0/gdalcubes/src/gdalcubes/src/image_collection.cpp                           |   67 
 gdalcubes-0.6.0/gdalcubes/src/gdalcubes/src/image_collection_cube.cpp                      |   97 -
 gdalcubes-0.6.0/gdalcubes/src/gdalcubes/src/ncdf_cube.cpp                                  |    4 
 gdalcubes-0.6.0/gdalcubes/src/gdalcubes/src/reduce_space.cpp                               |   43 
 gdalcubes-0.6.0/gdalcubes/src/gdalcubes/src/reduce_time.cpp                                |   44 
 gdalcubes-0.6.0/gdalcubes/src/gdalcubes/src/select_bands.cpp                               |    5 
 gdalcubes-0.6.0/gdalcubes/src/gdalcubes/src/stream.cpp                                     |  121 -
 gdalcubes-0.6.0/gdalcubes/src/gdalcubes/src/stream.h                                       |   17 
 gdalcubes-0.6.0/gdalcubes/src/gdalcubes/src/stream_apply_pixel.cpp                         |   39 
 gdalcubes-0.6.0/gdalcubes/src/gdalcubes/src/stream_apply_time.cpp                          |   87 -
 gdalcubes-0.6.0/gdalcubes/src/gdalcubes/src/stream_reduce_space.cpp                        |   90 -
 gdalcubes-0.6.0/gdalcubes/src/gdalcubes/src/stream_reduce_time.cpp                         |   88 -
 gdalcubes-0.6.0/gdalcubes/src/gdalcubes/src/utils.cpp                                      |   48 
 gdalcubes-0.6.0/gdalcubes/src/gdalcubes/src/utils.h                                        |   32 
 gdalcubes-0.6.0/gdalcubes/src/gdalcubes/src/warp.cpp                                       |    2 
 gdalcubes-0.6.0/gdalcubes/src/gdalcubes/src/window_time.cpp                                |   28 
 gdalcubes-0.6.0/gdalcubes/src/multiprocess.cpp                                             |only
 gdalcubes-0.6.0/gdalcubes/src/multiprocess.h                                               |only
 gdalcubes-0.6.0/gdalcubes/tests                                                            |only
 gdalcubes-0.6.0/gdalcubes/vignettes/gc01_MODIS.Rmd                                         |only
 108 files changed, 3531 insertions(+), 2624 deletions(-)

More information about gdalcubes at CRAN
Permanent link

Package CatastRo updated to version 0.2.1 with previous version 0.2.0 dated 2022-02-28

Title: Interface to the API 'Sede Electronica Del Catastro'
Description: Access public spatial data available under the 'INSPIRE' directive. Tools for downloading references and addresses of properties, as well as map images.
Author: Ángel Delgado Panadero [aut, cph] , Iñaki Ucar [ctb] , Diego Hernangómez [aut, cre]
Maintainer: Diego Hernangómez <diego.hernangomezherrero@gmail.com>

Diff between CatastRo versions 0.2.0 dated 2022-02-28 and 0.2.1 dated 2022-03-08

 CatastRo-0.2.0/CatastRo/man/figures/README-unnamed-chunk-6-1.png        |only
 CatastRo-0.2.0/CatastRo/man/figures/README-unnamed-chunk-7-1.png        |only
 CatastRo-0.2.0/CatastRo/man/figures/README-unnamed-chunk-8-1.png        |only
 CatastRo-0.2.1/CatastRo/DESCRIPTION                                     |    6 
 CatastRo-0.2.1/CatastRo/MD5                                             |   77 +++++-----
 CatastRo-0.2.1/CatastRo/NEWS.md                                         |only
 CatastRo-0.2.1/CatastRo/R/ovc_cpmrc.R                                   |    4 
 CatastRo-0.2.1/CatastRo/R/ovc_rccoor.R                                  |    4 
 CatastRo-0.2.1/CatastRo/R/ovc_rccoor_distancia.R                        |    4 
 CatastRo-0.2.1/CatastRo/R/search_coords.R                               |    2 
 CatastRo-0.2.1/CatastRo/R/utils_wfs.R                                   |    6 
 CatastRo-0.2.1/CatastRo/README.md                                       |   29 ++-
 CatastRo-0.2.1/CatastRo/data/catr_srs_values.rda                        |binary
 CatastRo-0.2.1/CatastRo/inst/WORDLIST                                   |    1 
 CatastRo-0.2.1/CatastRo/inst/doc/CatastRo.Rmd                           |   15 +
 CatastRo-0.2.1/CatastRo/inst/doc/CatastRo.html                          |   20 +-
 CatastRo-0.2.1/CatastRo/inst/doc/ovcservice.html                        |    1 
 CatastRo-0.2.1/CatastRo/man/catr_get_code_from_coords.Rd                |    2 
 CatastRo-0.2.1/CatastRo/man/figures/README-atom-1.png                   |only
 CatastRo-0.2.1/CatastRo/man/figures/README-wfs-1.png                    |only
 CatastRo-0.2.1/CatastRo/man/figures/README-wms-1.png                    |only
 CatastRo-0.2.1/CatastRo/man/figures/logo.png                            |binary
 CatastRo-0.2.1/CatastRo/tests/testthat/test-catr_atom_ad.R              |    6 
 CatastRo-0.2.1/CatastRo/tests/testthat/test-catr_atom_ad_db.R           |    1 
 CatastRo-0.2.1/CatastRo/tests/testthat/test-catr_atom_bu.R              |    5 
 CatastRo-0.2.1/CatastRo/tests/testthat/test-catr_atom_bu_db.R           |    2 
 CatastRo-0.2.1/CatastRo/tests/testthat/test-catr_atom_cp.R              |    5 
 CatastRo-0.2.1/CatastRo/tests/testthat/test-catr_atom_cp_db.R           |    2 
 CatastRo-0.2.1/CatastRo/tests/testthat/test-catr_atom_search_munic.R    |    1 
 CatastRo-0.2.1/CatastRo/tests/testthat/test-catr_cache_dir.R            |    2 
 CatastRo-0.2.1/CatastRo/tests/testthat/test-catr_get_code_from_coords.R |    1 
 CatastRo-0.2.1/CatastRo/tests/testthat/test-catr_ovc_cpmrc.R            |    4 
 CatastRo-0.2.1/CatastRo/tests/testthat/test-catr_ovc_rccoor.R           |    3 
 CatastRo-0.2.1/CatastRo/tests/testthat/test-catr_ovc_rccoor_distancia.R |    3 
 CatastRo-0.2.1/CatastRo/tests/testthat/test-catr_ovccallejero.R         |    2 
 CatastRo-0.2.1/CatastRo/tests/testthat/test-catr_wfs_at.R               |    9 +
 CatastRo-0.2.1/CatastRo/tests/testthat/test-catr_wfs_bu.R               |    9 +
 CatastRo-0.2.1/CatastRo/tests/testthat/test-catr_wfs_cp.R               |   16 +-
 CatastRo-0.2.1/CatastRo/tests/testthat/test-catr_wms.R                  |    2 
 CatastRo-0.2.1/CatastRo/vignettes/CatastRo.Rmd                          |   15 +
 CatastRo-0.2.1/CatastRo/vignettes/dataviz-1.png                         |binary
 CatastRo-0.2.1/CatastRo/vignettes/minimal-1.png                         |binary
 CatastRo-0.2.1/CatastRo/vignettes/santbernabeu-1.png                    |binary
 43 files changed, 168 insertions(+), 91 deletions(-)

More information about CatastRo at CRAN
Permanent link

Package wdnr.gis (with last version 0.1.2) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2021-09-02 0.1.2
2021-03-05 0.1.0

Permanent link
Package arcpullr (with last version 0.2.2) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2022-02-22 0.2.2
2021-09-02 0.2.1
2021-06-15 0.2.0
2021-02-23 0.1.2

Permanent link

Built and running on Debian GNU/Linux using R, littler and blosxom. Styled with Bootstrap.