Tue, 29 Mar 2022

Package textrecipes updated to version 0.5.1 with previous version 0.5.0 dated 2022-03-20

Title: Extra 'Recipes' for Text Processing
Description: Converting text to numerical features requires specifically created procedures, which are implemented as steps according to the 'recipes' package. These steps allows for tokenization, filtering, counting (tf and tfidf) and feature hashing.
Author: Emil Hvitfeldt [aut, cre]
Maintainer: Emil Hvitfeldt <emilhhvitfeldt@gmail.com>

Diff between textrecipes versions 0.5.0 dated 2022-03-20 and 0.5.1 dated 2022-03-29

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Package StratifiedMedicine updated to version 1.0.5 with previous version 1.0.4 dated 2021-09-02

Title: Stratified Medicine
Description: A toolkit for stratified medicine, subgroup identification, and precision medicine. Current tools include (1) filtering models (reduce covariate space), (2) patient-level estimate models (counterfactual patient-level quantities, such as the conditional average treatment effect), (3) subgroup identification models (find subsets of patients with similar treatment effects), and (4) treatment effect estimation and inference (for the overall population and discovered subgroups). These tools can be customized and are directly used in PRISM (patient response identifiers for stratified medicine; Jemielita and Mehrotra 2019 <arXiv:1912.03337>. This package is in beta and will be continually updated.
Author: Thomas Jemielita [aut, cre]
Maintainer: Thomas Jemielita <thomasjemielita@gmail.com>

Diff between StratifiedMedicine versions 1.0.4 dated 2021-09-02 and 1.0.5 dated 2022-03-29

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Package opentimsr updated to version 1.0.13 with previous version 1.0.12 dated 2022-03-08

Title: An Open-Source Loader for Bruker's timsTOF Data Files
Description: A free, open-source package designed for handling .tdf data files produced by Bruker's 'timsTOF' mass spectrometers. Fast, free, crossplatform, with no reading through EULAs or messing with binary .dll files involved.
Author: Michał Piotr Startek [aut, cre, cph] , Mateusz Krzysztof Łącki [aut, cph]
Maintainer: Michał Piotr Startek <michal.startek@mimuw.edu.pl>

Diff between opentimsr versions 1.0.12 dated 2022-03-08 and 1.0.13 dated 2022-03-29

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Package NMF updated to version 0.24.0 with previous version 0.23.0 dated 2020-08-01

Title: Algorithms and Framework for Nonnegative Matrix Factorization (NMF)
Description: Provides a framework to perform Non-negative Matrix Factorization (NMF). The package implements a set of already published algorithms and seeding methods, and provides a framework to test, develop and plug new/custom algorithms. Most of the built-in algorithms have been optimized in C++, and the main interface function provides an easy way of performing parallel computations on multicore machines.
Author: Renaud Gaujoux, Cathal Seoighe
Maintainer: Nicolas Sauwen <nicolas.sauwen@openanalytics.eu>

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Package waves updated to version 0.2.4 with previous version 0.2.3 dated 2022-03-07

Title: Vis-NIR Spectral Analysis Wrapper
Description: Originally designed application in the context of resource-limited plant research and breeding programs, 'waves' provides an open-source solution to spectral data processing and model development by bringing useful packages together into a streamlined pipeline. This package is wrapper for functions related to the analysis of point visible and near-infrared reflectance measurements. It includes visualization, filtering, aggregation, preprocessing, cross-validation set formation, model training, and prediction functions to enable open-source association of spectral and reference data. This package is documented in a peer-reviewed manuscript in the Plant Phenome Journal <doi:10.1002/ppj2.20012>. Specialized cross-validation schemes are described in detail in Jarquín et al. (2017) <doi:10.3835/plantgenome2016.12.0130>. Example data is from Ikeogu et al. (2017) <doi:10.1371/journal.pone.0188918>.
Author: Jenna Hershberger [aut, cre] , Michael Gore [ths], NSF BREAD IOS-1543958 [fnd]
Maintainer: Jenna Hershberger <jmh579@cornell.edu>

Diff between waves versions 0.2.3 dated 2022-03-07 and 0.2.4 dated 2022-03-29

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Package TDA updated to version 1.8.7 with previous version 1.8.6 dated 2022-03-10

Title: Statistical Tools for Topological Data Analysis
Description: Tools for the statistical analysis of persistent homology and for density clustering. For that, this package provides an R interface for the efficient algorithms of the C++ libraries 'GUDHI' <https://project.inria.fr/gudhi/software/>, 'Dionysus' <https://www.mrzv.org/software/dionysus/>, and 'PHAT' <https://bitbucket.org/phat-code/phat/>. This package also implements the methods in Fasy et al. (2014) <doi:10.1214/14-AOS1252> and Chazal et al. (2014) <doi:10.1145/2582112.2582128> for analyzing the statistical significance of persistent homology features.
Author: Brittany T. Fasy, Jisu Kim, Fabrizio Lecci, Clement Maria, David L. Millman, Vincent Rouvreau.
Maintainer: Jisu Kim <jisu.kim@inria.fr>

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Package spOccupancy updated to version 0.3.0 with previous version 0.2.1 dated 2022-01-07

Title: Single-Species, Multi-Species, and Integrated Spatial Occupancy Models
Description: Fits single-species, multi-species, and integrated non-spatial and spatial occupancy models using Markov Chain Monte Carlo (MCMC). Models are fit using Polya-Gamma data augmentation detailed in Polson, Scott, and Windle (2013) <doi:10.1080/01621459.2013.829001>. Spatial models are fit using either Gaussian processes or Nearest Neighbor Gaussian Processes (NNGP) for large spatial datasets. Details on NNGP models are given in Datta, Banerjee, Finley, and Gelfand (2016) <doi:10.1080/01621459.2015.1044091> and Finley, Datta, and Banerjee (2020) <arXiv:2001.09111>. Provides functionality for data integration of multiple single-species occupancy data sets using a joint likelihood framework. Details on data integration are given in Miller, Pacifici, Sanderlin, and Reich (2019) <doi:10.1111/2041-210X.13110>. Details on single-species and multi-species models are found in MacKenzie, Nichols, Lachman, Droege, Royle, and Langtimm (2002) <doi:10.1890/0012-9658(2002)083[2248:ESORWD]2.0.CO;2> and Dorazio and Royle <doi:10.1198/016214505000000015>, respectively.
Author: Jeffrey Doser [aut, cre], Andrew Finley [aut]
Maintainer: Jeffrey Doser <doserjef@msu.edu>

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New package scModels with initial version 1.0.3
Package: scModels
Title: Fitting Discrete Distribution Models to Count Data
Version: 1.0.3
DateNote: Previous CRAN version 1.0.2 on 2021-02-26
Maintainer: Lisa Amrhein <amrheinlisa@gmail.com>
License: GPL-3
Description: Provides functions for fitting discrete distribution models to count data. Included are the Poisson, the negative binomial, the Poisson-inverse gaussian and, most importantly, a new implementation of the Poisson-beta distribution (density, distribution and quantile functions, and random number generator) together with a needed new implementation of Kummer's function (also: confluent hypergeometric function of the first kind). Three different implementations of the Gillespie algorithm allow data simulation based on the basic, switching or bursting mRNA generating processes. Moreover, likelihood functions for four variants of each of the three aforementioned distributions are also available. The variants include one population and two population mixtures, both with and without zero-inflation. The package depends on the 'MPFR' libraries (<https://www.mpfr.org/>) which need to be installed separately (see description at <https://github.com/fuchslab/scModels>). This package is supplement to the paper "A mechanistic model for the negative binomial distribution of single-cell mRNA counts" by Lisa Amrhein, Kumar Harsha and Christiane Fuchs (2019) <doi:10.1101/657619> available on bioRxiv.
Depends: R (>= 3.1.0)
Suggests: knitr, rmarkdown, testthat
LinkingTo: Rcpp
Imports: Rcpp, gamlss.dist
Encoding: UTF-8
SystemRequirements: gmp (>= 4.2.3), mpfr (>= 3.0.0)
SystemRequirementsNote: 'MPFR' (MP Floating-Point Reliable Library, <http://mpfr.org/>) and 'GMP' (GNU Multiple Precision library,<http://gmplib.org/>)
NeedsCompilation: yes
Packaged: 2022-03-29 13:44:59 UTC; lisa.amrhein
Author: Lisa Amrhein [aut, cre] , Kumar Harsha [aut] , Christiane Fuchs [aut] , Pavel Holoborodko [ctb]
Repository: CRAN
Date/Publication: 2022-03-29 21:50:10 UTC

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Package pencal updated to version 1.1.0 with previous version 1.0.2 dated 2022-02-14

Title: Penalized Regression Calibration (PRC)
Description: Computes penalized regression calibration (PRC), a statistical method that allows to predict survival from high-dimensional longitudinal predictors. PRC is described in Signorelli et al. (2021, <doi:10.1002/sim.9178>)).
Author: Mirko Signorelli [aut, cre, cph] , Pietro Spitali [ctb], Roula Tsonaka [ctb]
Maintainer: Mirko Signorelli <msignorelli.rpackages@gmail.com>

Diff between pencal versions 1.0.2 dated 2022-02-14 and 1.1.0 dated 2022-03-29

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Package LabourMarketAreas updated to version 3.3 with previous version 3.2.5 dated 2020-09-07

Title: Identification, Tuning, Visualisation and Analysis of Labour Market Areas
Description: Produces Labour Market Areas from commuting flows available at elementary territorial units. It provides tools for automatic tuning based on spatial contiguity. It also allows for statistical analyses and visualisation of the new functional geography.
Author: Daniela Ichim, Luisa Franconi, Michele D'Alo', Guido van den Heuvel
Maintainer: Luisa Franconi <franconi@istat.it>

Diff between LabourMarketAreas versions 3.2.5 dated 2020-09-07 and 3.3 dated 2022-03-29

 DESCRIPTION                      |   12 ++--
 MD5                              |    9 ++-
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Package gert updated to version 1.6.0 with previous version 1.5.0 dated 2022-01-03

Title: Simple Git Client for R
Description: Simple git client for R based on 'libgit2' <https://libgit2.org> with support for SSH and HTTPS remotes. All functions in 'gert' use basic R data types (such as vectors and data-frames) for their arguments and return values. User credentials are shared with command line 'git' through the git-credential store and ssh keys stored on disk or ssh-agent.
Author: Jeroen Ooms [aut, cre] , Jennifer Bryan [ctb]
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>

Diff between gert versions 1.5.0 dated 2022-01-03 and 1.6.0 dated 2022-03-29

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New package BigDataStatMeth with initial version 0.99.32
Package: BigDataStatMeth
Title: Statistical Methods and Algorithms for Big Data
Version: 0.99.32
Description: Basic Algebra methods using parallel algorithms to be used in big data problems such as omics data analyses. The functions will consider as input an HDF5 data file, an object of class DelayedArray or an R object.
License: MIT + file LICENSE
Depends: R (>= 3.6.0)
Imports: data.table, Rcpp (>= 1.0.6), RcppParallel (>= 5.0.2), RCurl, rhdf5, utils
LinkingTo: Rcpp, RcppEigen, RcppParallel, beachmat, Rhdf5lib, RSpectra, BH
Suggests: HDF5Array, DelayedArray, Matrix, BiocStyle, knitr, rmarkdown, ggplot2, microbenchmark
SystemRequirements: GNU make, C++11
Encoding: UTF-8
VignetteBuilder: knitr
NeedsCompilation: yes
Packaged: 2022-03-28 12:32:08 UTC; dpelegri
Author: Dolors Pelegri-Siso [aut, cre] , Juan R. Gonzalez [aut]
Maintainer: Dolors Pelegri-Siso <dolors.pelegri@isglobal.org>
Repository: CRAN
Date/Publication: 2022-03-29 22:00:07 UTC

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Package BDgraph updated to version 2.65 with previous version 2.64 dated 2021-05-03

Title: Bayesian Structure Learning in Graphical Models using Birth-Death MCMC
Description: Statistical tools for Bayesian structure learning in undirected graphical models for continuous, discrete, and mixed data. The package is implemented the recent improvements in the Bayesian graphical models' literature, including Mohammadi and Wit (2015) <doi:10.1214/14-BA889>, Mohammadi et al. (2021) <doi:10.1080/01621459.2021.1996377>, and Mohammadi and Wit (2019) <doi:10.18637/jss.v089.i03>.
Author: Reza Mohammadi [aut, cre] , Ernst Wit [aut] , Adrian Dobra [ctb]
Maintainer: Reza Mohammadi <a.mohammadi@uva.nl>

Diff between BDgraph versions 2.64 dated 2021-05-03 and 2.65 dated 2022-03-29

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Package nftbart updated to version 1.3 with previous version 1.2 dated 2022-02-03

Title: Nonparametric Failure Time Bayesian Additive Regression Trees
Description: Nonparametric Failure Time (NFT) Bayesian Additive Regression Trees (BART): Time-to-event Machine Learning with Heteroskedastic Bayesian Additive Regression Trees (HBART) and Low Information Omnibus (LIO) Dirichlet Process Mixtures (DPM). An NFT BART model is of the form Y = mu + f(x) + s(x) E where functions f and s have BART and HBART priors, respectively, while E is a nonparametric error distribution due to a DPM LIO prior hierarchy. See the following for a technical description of the model <https://www.mcw.edu/-/media/MCW/Departments/Biostatistics/tr72.pdf?la=en>.
Author: Rodney Sparapani [aut, cre], Robert McCulloch [aut], Matthew Pratola [ctb], Hugh Chipman [ctb]
Maintainer: Rodney Sparapani <rsparapa@mcw.edu>

Diff between nftbart versions 1.2 dated 2022-02-03 and 1.3 dated 2022-03-29

 DESCRIPTION       |    8 ++++----
 MD5               |    6 +++---
 NEWS              |    3 +++
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 4 files changed, 13 insertions(+), 8 deletions(-)

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New package LOGANTree with initial version 0.1.0
Package: LOGANTree
Title: Tree-Based Models for the Analysis of Log Files from Computer-Based Assessments
Version: 0.1.0
Description: Enables researchers to model log-file data from computer-based assessments using machine-learning techniques. It allows researchers to generate new knowledge by comparing the performance of three tree-based classification models (i.e., decision trees, random forest, and gradient boosting) to predict student's outcome. It also contains a set of handful functions for the analysis of the features' influence on the modeling. Data from the Climate control item from the 2012 Programme for International Student Assessment (PISA, <https://www.oecd.org/pisa/>) is available for an illustration of the package's capability. He, Q., & von Davier, M. (2015) <doi:10.1007/978-3-319-19977-1_13> Boehmke, B., & Greenwell, B. M. (2019) <doi:10.1201/9780367816377> .
License: GPL-3
Encoding: UTF-8
LazyData: true
Depends: R (>= 3.5.0)
Imports: ROCR, caret, caretEnsemble, dplyr, ggplot2, rpart.plot, tibble, gbm, stats
NeedsCompilation: no
Packaged: 2022-03-29 11:37:29 UTC; na.
Author: Denise Reis Costa [aut, ths], Qi Qin [aut, cre]
Maintainer: Qi Qin <qiq@student.uv.uio.no>
Repository: CRAN
Date/Publication: 2022-03-29 19:20:05 UTC

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New package KoboconnectR with initial version 1.0.0
Package: KoboconnectR
Title: Download Data from Kobotoolbox to R
URL: https://github.com/asitav-sen/KoboconnectR
BugReports: https://github.com/asitav-sen/koboconnectR/issues
Version: 1.0.0
Description: Wrapper for 'Kobotoolbox' APIs ver 2 mentioned at <https://support.kobotoolbox.org/api.html>, to download data from 'Kobotoolbox' to R. Small and simple package that adds immense convenience for the data professionals using 'Kobotoolbox'.
License: GPL (>= 3)
Encoding: UTF-8
Imports: httr, curl, jsonlite, mime, openssl, R6, methods, dplyr
Suggests: knitr, rmarkdown, spelling, testthat (>= 3.0.0)
Language: en-US
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2022-03-29 12:18:27 UTC; scarecrow
Author: Asitav Sen [aut, cre, cph]
Maintainer: Asitav Sen <hello@asitavsen.com>
Repository: CRAN
Date/Publication: 2022-03-29 19:20:07 UTC

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New package hudr with initial version 1.0.0
Encoding: UTF-8
Language: en-US
Package: hudr
Title: Providing Data from the US Department of Housing and Urban Development
Version: 1.0.0
Date: 2022-03-29
Author: Paul Richardson
Maintainer: Paul Richardson <p.richardson.54391@gmail.com>
Description: Provides functions to access data from the US Department of Housing and Urban Development <https://www.huduser.gov/portal/dataset/fmr-api.html>.
License: GPL (>= 3)
Depends: R (>= 3.5.0)
Imports: magrittr, data.table, janitor, httr
NeedsCompilation: no
Packaged: 2022-03-29 13:29:30 UTC; prich
Repository: CRAN
Date/Publication: 2022-03-29 19:20:02 UTC

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New package spFW with initial version 0.1.0
Package: spFW
Title: Hierarchical Spatial Finlay-Wilkinson Model
Version: 0.1.0
Author: Xingche Guo <xguo@iastate.edu>
Maintainer: Xingche Guo <xguo@iastate.edu>
Description: Estimation and Prediction Functions Using Bayesian Hierarchical Spatial Finlay-Wilkinson Model for Analysis of Multi-Environment Field Trials.
License: GPL-3
Encoding: UTF-8
LazyData: true
Depends: R (>= 2.10)
LinkingTo: Rcpp, RcppArmadillo
Imports: Rcpp
NeedsCompilation: yes
Packaged: 2022-03-29 07:41:56 UTC; apple
Repository: CRAN
Date/Publication: 2022-03-29 18:40:02 UTC

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New package RGAN with initial version 0.1.1
Package: RGAN
Title: Generative Adversarial Nets (GAN) in R
Version: 0.1.1
Description: An easy way to get started with Generative Adversarial Nets (GAN) in R. The GAN algorithm was initially described by Goodfellow et al. 2014 <https://proceedings.neurips.cc/paper/2014/file/5ca3e9b122f61f8f06494c97b1afccf3-Paper.pdf>. A GAN can be used to learn the joint distribution of complex data by comparison. A GAN consists of two neural networks a Generator and a Discriminator, where the two neural networks play an adversarial minimax game. Built-in GAN models make the training of GANs in R possible in one line and make it easy to experiment with different design choices (e.g. different network architectures, value functions, optimizers). The built-in GAN models work with tabular data (e.g. to produce synthetic data) and image data. Methods to post-process the output of GAN models to enhance the quality of samples are available.
License: MIT + file LICENSE
URL: https://github.com/mneunhoe/RGAN
BugReports: https://github.com/mneunhoe/RGAN/issues
Encoding: UTF-8
Imports: cli, torch, viridis
NeedsCompilation: no
Packaged: 2022-03-28 21:25:13 UTC; marcelneunhoeffer
Author: Marcel Neunhoeffer [aut, cre]
Maintainer: Marcel Neunhoeffer <marcel.neunhoeffer@gmail.com>
Repository: CRAN
Date/Publication: 2022-03-29 18:30:06 UTC

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New package formatters with initial version 0.2.0
Package: formatters
Title: ASCII Formatting for Values and Tables
Date: 2022-03-24
Version: 0.2.0
Description: We provide a framework for rendering complex tables to ASCII, and a set of formatters for transforming values or sets of values into ASCII-ready display strings.
License: Apache License 2.0
Depends: methods, R (>= 2.10)
Imports: htmltools
Suggests: dplyr, tinytest, knitr, rmarkdown
Encoding: UTF-8
LazyData: true
URL: https://github.com/insightsengineering/formatters
BugReports: https://github.com/insightsengineering/formatters/issues
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2022-03-28 22:48:30 UTC; gabrielbecker
Author: Gabriel Becker [aut, cre], Adrian Waddell [aut], F. Hoffmann-La Roche [cph]
Maintainer: Gabriel Becker <gabembecker@gmail.com>
Repository: CRAN
Date/Publication: 2022-03-29 18:30:02 UTC

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Package exactextractr updated to version 0.8.0 with previous version 0.7.2 dated 2021-12-05

Title: Fast Extraction from Raster Datasets using Polygons
Description: Provides a replacement for the 'extract' function from the 'raster' package that is suitable for extracting raster values using 'sf' polygons.
Author: Daniel Baston [aut, cre], ISciences, LLC [cph]
Maintainer: Daniel Baston <dbaston@isciences.com>

Diff between exactextractr versions 0.7.2 dated 2021-12-05 and 0.8.0 dated 2022-03-29

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New package ClickHouseHTTP with initial version 0.1.1
Package: ClickHouseHTTP
Title: A Simple HTTP Database Interface to 'ClickHouse'
Version: 0.1.1
Description: 'ClickHouse' (<https://clickhouse.com/>) is an open-source, high performance columnar OLAP (online analytical processing of queries) database management system for real-time analytics using SQL. This 'DBI' backend relies on the 'ClickHouse' HTTP interface and support HTTPS protocol.
URL: https://github.com/patzaw/ClickHouseHTTP
BugReports: https://github.com/patzaw/ClickHouseHTTP/issues
Depends: R (>= 3.6)
Imports: methods, DBI (>= 0.3.0), httr, jsonlite, arrow, data.table
Suggests: knitr, rmarkdown, dplyr, stringi
License: GPL-3
Encoding: UTF-8
NeedsCompilation: no
Packaged: 2022-03-29 06:48:24 UTC; pgodard
Author: Patrice Godard [aut, cre, cph]
Maintainer: Patrice Godard <patrice.godard@gmail.com>
Repository: CRAN
Date/Publication: 2022-03-29 18:40:05 UTC

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Package PSS.Health updated to version 0.4.0 with previous version 0.3.1 dated 2021-10-07

Title: Power and Sample Size for Health Researchers via Shiny
Description: Power and Sample Size for Health Researchers is a Shiny application that brings together a series of functions related to sample size and power calculations for common analysis in the healthcare field. There are functionalities to calculate the power, sample size to estimate or test hypotheses for means and proportions (including test for correlated groups, equivalence, non-inferiority and superiority), association, correlations coefficients, regression coefficients (linear, logistic and Cox), linear mixed model, Cronbach's alpha, interobserver agreement, intraclass correlation coefficients, limit of agreement on Bland-Altman plots, area under the curve, sensitivity and specificity incorporating the prevalence of disease. You can also use the online version at <https://hcpa-unidade-bioestatistica.shinyapps.io/PSS_Health/>.
Author: Rogerio Boff Borges [aut, cre] , Guilherme Serpa Azambuja [aut] , Aline Castello Branco Mancuso [aut] , Vanessa Bielefeldt Leotti [aut] , Vânia Naomi Hirakata [aut] , Suzi Alves Camey [aut] , Stela Maris de Jezus Castro [aut] , Hospital de Clínicas d [...truncated...]
Maintainer: Rogerio Boff Borges <roborges@hcpa.edu.br>

Diff between PSS.Health versions 0.3.1 dated 2021-10-07 and 0.4.0 dated 2022-03-29

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Package IRISSeismic updated to version 1.6.4 with previous version 1.6.3 dated 2021-10-07

Title: Classes and Methods for Seismic Data Analysis
Description: Provides classes and methods for seismic data analysis. The base classes and methods are inspired by the python code found in the 'ObsPy' python toolbox <https://github.com/obspy/obspy>. Additional classes and methods support data returned by web services provided by the 'IRIS DMC' <http://service.iris.edu/>.
Author: Jonathan Callahan [aut], Rob Casey [aut], Gillian Sharer [aut, cre], Mary Templeton [aut], Chad Trabant [ctb]
Maintainer: Gillian Sharer <gillian@iris.washington.edu>

Diff between IRISSeismic versions 1.6.3 dated 2021-10-07 and 1.6.4 dated 2022-03-29

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More information about IRISSeismic at CRAN
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Package testthat updated to version 3.1.3 with previous version 3.1.2 dated 2022-01-20

Title: Unit Testing for R
Description: Software testing is important, but, in part because it is frustrating and boring, many of us avoid it. 'testthat' is a testing framework for R that is easy to learn and use, and integrates with your existing 'workflow'.
Author: Hadley Wickham [aut, cre], RStudio [cph, fnd], R Core team [ctb] )
Maintainer: Hadley Wickham <hadley@rstudio.com>

Diff between testthat versions 3.1.2 dated 2022-01-20 and 3.1.3 dated 2022-03-29

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Package rbacon updated to version 2.5.8 with previous version 2.5.7 dated 2021-08-12

Title: Age-Depth Modelling using Bayesian Statistics
Description: An approach to age-depth modelling that uses Bayesian statistics to reconstruct accumulation histories for deposits, through combining radiocarbon and other dates with prior information. See Blaauw & Christen (2011).
Author: Maarten Blaauw [aut, cre] , J. Andres Christen [aut, ctb, cph] , Marco A. Aquino Lopez [aut], Judith Esquivel Vazquez [ctb], Oscar M. Gonzalez V. [ctb], Ted Belding [cph], James Theiler [cph], Brian Gough [cph], Charles Karney [cph]
Maintainer: Maarten Blaauw <maarten.blaauw@qub.ac.uk>

Diff between rbacon versions 2.5.7 dated 2021-08-12 and 2.5.8 dated 2022-03-29

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Package tuneR updated to version 1.4.0 with previous version 1.3.3.1 dated 2021-08-04

Title: Analysis of Music and Speech
Description: Analyze music and speech, extract features like MFCCs, handle wave files and their representation in various ways, read mp3, read midi, perform steps of a transcription, ... Also contains functions ported from the 'rastamat' 'Matlab' package.
Author: Uwe Ligges [aut, cre, cph] , Sebastian Krey [aut, cph], Olaf Mersmann [aut, cph], Sarah Schnackenberg [aut, cph], Guillaume Guenard [aut, cph] , Daniel P. W. Ellis [aut, cph] , Underbit Technologies [aut, cph] , Andrea Preusser [ctb], Anita Thieler [ [...truncated...]
Maintainer: Uwe Ligges <ligges@statistik.tu-dortmund.de>

Diff between tuneR versions 1.3.3.1 dated 2021-08-04 and 1.4.0 dated 2022-03-29

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Package SKAT updated to version 2.2.4 with previous version 2.0.1 dated 2020-10-20

Title: SNP-Set (Sequence) Kernel Association Test
Description: Functions for kernel-regression-based association tests including Burden test, SKAT and SKAT-O. These methods aggregate individual SNP score statistics in a SNP set and efficiently compute SNP-set level p-values. Methods available in this package include SKAT described in Micheal Wu, Seunggeun Lee et al. (2011) <doi:10.1016/j.ajhg.2011.05.029>, SKAT-O in Seunggeun Lee et al. (2012) <doi:10.1093/biostatistics/kxs014>, combined test of rare and common variants in Iuliana Ionita-Laza and Seunggeun Lee et al. (2013) <doi:10.1016/j.ajhg.2013.04.015>, efficient resampling for binary traits in Seunggeun Lee et al. (2016) <doi:10.1093/biostatistics/kxv033>, and robust test for binary traits in Zhangchen Zhao et al. (2020) <doi:10.1016/j.ajhg.2019.11.012>.
Author: Seunggeun Lee [aut, cre, cph], Zhangchen Zhao [aut], Larisa Miropolsky [aut], Michael Wu [aut]
Maintainer: Seunggeun (Shawn) Lee <lee7801@snu.ac.kr>

Diff between SKAT versions 2.0.1 dated 2020-10-20 and 2.2.4 dated 2022-03-29

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Package RcppBDT updated to version 0.2.5 with previous version 0.2.4 dated 2021-08-15

Title: 'Rcpp' Bindings for the Boost Date_Time Library
Description: Access to Boost Date_Time functionality for dates, durations (both for days and date time objects), time zones, and posix time ('ptime') is provided by using 'Rcpp modules'. The posix time implementation can support high-resolution of up to nano-second precision by using 96 bits (instead of R's 64) to present a 'ptime' object (but this needs recompilation with a #define set).
Author: Dirk Eddelbuettel and Romain Francois
Maintainer: Dirk Eddelbuettel <edd@debian.org>

Diff between RcppBDT versions 0.2.4 dated 2021-08-15 and 0.2.5 dated 2022-03-29

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Package purrrlyr updated to version 0.0.8 with previous version 0.0.7 dated 2020-12-16

Title: Tools at the Intersection of 'purrr' and 'dplyr'
Description: Some functions at the intersection of 'dplyr' and 'purrr' that formerly lived in 'purrr'.
Author: Lionel Henry [aut, cre], Hadley Wickham [ctb], RStudio [cph]
Maintainer: Lionel Henry <lionel@rstudio.com>

Diff between purrrlyr versions 0.0.7 dated 2020-12-16 and 0.0.8 dated 2022-03-29

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Package kohonen updated to version 3.0.11 with previous version 3.0.10 dated 2019-11-26

Title: Supervised and Unsupervised Self-Organising Maps
Description: Functions to train self-organising maps (SOMs). Also interrogation of the maps and prediction using trained maps are supported. The name of the package refers to Teuvo Kohonen, the inventor of the SOM.
Author: Ron Wehrens and Johannes Kruisselbrink
Maintainer: Ron Wehrens <ron.wehrens@gmail.com>

Diff between kohonen versions 3.0.10 dated 2019-11-26 and 3.0.11 dated 2022-03-29

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Package PearsonDS updated to version 1.2.2 with previous version 1.2.1 dated 2021-10-06

Title: Pearson Distribution System
Description: Implementation of the Pearson distribution system, including full support for the (d,p,q,r)-family of functions for probability distributions and fitting via method of moments and maximum likelihood method.

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Package spectator updated to version 0.1.1 with previous version 0.1.0 dated 2021-12-03

Title: Interface to the 'Spectator Earth' API
Description: Provides interface to the 'Spectator Earth' API <https://api.spectator.earth/>, mainly for obtaining the acquisition plans and satellite overpasses for Sentinel-1, Sentinel-2, Landsat-8 and Landsat-9 satellites. Current position and trajectory can also be obtained for a much larger set of satellites. It is also possible to search the archive for available images over the area of interest for a given (past) period, get the URL links to download the whole image tiles, or alternatively to download the image for just the area of interest based on selected spectral bands.
Author: Zivan Karaman [aut, cre, cph]
Maintainer: Zivan Karaman <zivan.karaman@gmail.com>

Diff between spectator versions 0.1.0 dated 2021-12-03 and 0.1.1 dated 2022-03-29

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Package SimEUCartelLaw updated to version 1.0.2 with previous version 1.0.1 dated 2018-05-30

Title: Simulation of Legal Exemption System for European Cartel Law
Description: Monte Carlo simulations of a game-theoretic model for the legal exemption system of the European cartel law are implemented in order to estimate the (mean) deterrent effect of this system. The input and output parameters of the simulated cartel opportunities can be visualized by three-dimensional projections. A description of the model is given in Moritz et al. (2018) <doi:10.1515/bejeap-2017-0235>.
Author: Martin Becker [aut, cre]
Maintainer: Martin Becker <martin.becker@mx.uni-saarland.de>

Diff between SimEUCartelLaw versions 1.0.1 dated 2018-05-30 and 1.0.2 dated 2022-03-29

 DESCRIPTION          |   10 ++++++----
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New package re2 with initial version 0.1.2
Package: re2
Title: R Interface to Google RE2 (C++) Regular Expression Library
Version: 0.1.2
Date: 2022-03-29
Author: Girish Palya [aut, cre], RE2 developers [ctb] , Google Inc. [ctb, cph]
Maintainer: Girish Palya <girishji@gmail.com>
Description: Pattern matching, extraction, replacement and other string processing operations using Google's RE2 <https://github.com/google/re2> regular-expression engine. Consistent interface (similar to 'stringr'). RE2 uses finite-automata based techniques, and offers a fast and safe alternative to backtracking regular-expression engines like those used in 'stringr', 'stringi' and other PCRE implementations.
License: MIT + file LICENSE
Imports: Rcpp (>= 1.0.8.3)
LinkingTo: Rcpp
URL: https://github.com/girishji/re2
BugReports: https://github.com/girishji/re2/issues
Encoding: UTF-8
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
NeedsCompilation: yes
Packaged: 2022-03-29 08:30:43 UTC; gp
Repository: CRAN
Date/Publication: 2022-03-29 11:50:02 UTC

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Package StepBeta updated to version 0.1.1 with previous version 0.1.0 dated 2022-02-01

Title: Provide the Stepwise Procedure for Beta Regression Models
Description: Starting from a Beta Regression Model, it provides a stepwise procedure to select the linear predictor.
Author: Sergio Garofalo
Maintainer: Sergio Garofalo <sergio.garofalo96@gmail.com>

Diff between StepBeta versions 0.1.0 dated 2022-02-01 and 0.1.1 dated 2022-03-29

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Package statsExpressions updated to version 1.3.1 with previous version 1.3.0 dated 2022-01-14

Title: Tidy Dataframes and Expressions with Statistical Details
Description: Utilities for producing dataframes with rich details for the most common types of statistical approaches and tests: parametric, nonparametric, robust, and Bayesian t-test, one-way ANOVA, correlation analyses, contingency table analyses, and meta-analyses. The functions are pipe-friendly and provide a consistent syntax to work with tidy data. These dataframes additionally contain expressions with statistical details, and can be used in graphing packages. This package also forms the statistical processing backend for 'ggstatsplot'.
Author: Indrajeet Patil [cre, aut, cph]
Maintainer: Indrajeet Patil <patilindrajeet.science@gmail.com>

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Permanent link

Package rSFA updated to version 1.5 with previous version 1.04 dated 2014-12-17

Title: Slow Feature Analysis
Description: Slow Feature Analysis (SFA), ported to R based on 'matlab' implementations of SFA: 'SFA toolkit' 1.0 by Pietro Berkes and 'SFA toolkit' 2.8 by Wolfgang Konen.
Author: Wolfgang Konen <wolfgang.konen@fh-koeln.de>, Martin Zaefferer, Patrick Koch; Bug hunting and testing by Ayodele Fasika, Ashwin Kumar, Prawyn Jebakumar
Maintainer: Martin Zaefferer <martin.zaefferer@gmx.de>

Diff between rSFA versions 1.04 dated 2014-12-17 and 1.5 dated 2022-03-29

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Package rasterdiv updated to version 0.2-5.2 with previous version 0.2-5 dated 2022-02-24

Title: Diversity Indices for Numerical Matrices
Description: Providing functions to calculate indices of diversity on numerical matrices based on information theory. The rationale behind the package is described in Rocchini, Marcantonio and Ricotta (2017) <doi:10.1016/j.ecolind.2016.07.039> and Rocchini, Marcantonio,..., Ricotta (2021) <doi:10.1101/2021.01.23.427872>.
Author: Matteo Marcantonio [aut, cre], Martina Iannacito [aut, ctb], Elisa Marchetto [ctb], Elisa Thouverai [aut, ctb], Michele Torresani [aut, ctb], Daniele Da Re [aut], Clara Tattoni [aut], Giovanni Bacaro [aut], Saverio Vicario [aut, ctb], Carlo Ricotta [ [...truncated...]
Maintainer: Matteo Marcantonio <marcantoniomatteo@gmail.com>

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Package mgcv updated to version 1.8-40 with previous version 1.8-39 dated 2022-02-24

Title: Mixed GAM Computation Vehicle with Automatic Smoothness Estimation
Description: Generalized additive (mixed) models, some of their extensions and other generalized ridge regression with multiple smoothing parameter estimation by (Restricted) Marginal Likelihood, Generalized Cross Validation and similar, or using iterated nested Laplace approximation for fully Bayesian inference. See Wood (2017) <doi:10.1201/9781315370279> for an overview. Includes a gam() function, a wide variety of smoothers, 'JAGS' support and distributions beyond the exponential family.
Author: Simon Wood <simon.wood@r-project.org>
Maintainer: Simon Wood <simon.wood@r-project.org>

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Package jmv updated to version 2.3.4 with previous version 2.0 dated 2021-07-17

Title: The 'jamovi' Analyses
Description: A suite of common statistical methods such as descriptives, t-tests, ANOVAs, regression, correlation matrices, proportion tests, contingency tables, and factor analysis. This package is also useable from the 'jamovi' statistical spreadsheet (see <https://www.jamovi.org> for more information).
Author: Ravi Selker, Jonathon Love, Damian Dropmann, Victor Moreno
Maintainer: Jonathon Love <jon@thon.cc>

Diff between jmv versions 2.0 dated 2021-07-17 and 2.3.4 dated 2022-03-29

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Package ufRisk updated to version 1.0.4 with previous version 1.0.3 dated 2022-03-06

Title: Risk Measure Calculation in Financial TS
Description: Enables the user to calculate Value at Risk (VaR) and Expected Shortfall (ES) by means of various parametric and semiparametric GARCH-type models. For the latter the estimation of the nonparametric scale function is carried out by means of a data-driven smoothing approach. Model quality, in terms of forecasting VaR and ES, can be assessed by means of various backtesting methods such as the traffic light test for VaR and a newly developed traffic light test for ES. The approaches implemented in this package are described in e.g. Feng Y., Beran J., Letmathe S. and Ghosh S. (2020) <https://ideas.repec.org/p/pdn/ciepap/137.html> as well as Letmathe S., Feng Y. and Uhde A. (2021) <https://ideas.repec.org/p/pdn/ciepap/141.html>.
Author: Yuanhua Feng [aut] , Xuehai Zhang [aut] , Christian Peitz [aut] , Dominik Schulz [aut] , Shujie Li [aut] , Sebastian Letmathe [aut, cre]
Maintainer: Sebastian Letmathe <sebastian.letmathe@uni-paderborn.de>

Diff between ufRisk versions 1.0.3 dated 2022-03-06 and 1.0.4 dated 2022-03-29

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New package rfvimptest with initial version 0.1.1
Package: rfvimptest
Title: Sequential Permutation Testing of Random Forest Variable Importance Measures
Version: 0.1.1
Date: 2022-03-28
Description: Sequential permutation testing for statistical significance of predictors in random forests. The main function of the package is rfvimptest(), which allows to test for the statistical significance of predictors in random forests using different (sequential) permutation test strategies. The advantage of sequential over conventional permutation tests is that they are computationally considerably less intensive, as the sequential procedure is stopped as soon as there is sufficient evidence for either the null or the alternative hypothesis.
License: GPL-3
Imports: party, ranger, permimp
Encoding: UTF-8
LazyData: true
NeedsCompilation: no
Packaged: 2022-03-28 09:07:49 UTC; Roman
Author: Alexander Hapfelmeier [aut], Roman Hornung [aut, cre]
Maintainer: Roman Hornung <hornung@ibe.med.uni-muenchen.de>
Depends: R (>= 3.5.0)
Repository: CRAN
Date/Publication: 2022-03-29 08:10:02 UTC

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New package go2bigq with initial version 1.0
Package: go2bigq
Title: Convert Large Numbers to Bigq Format
Version: 1.0
Date: 2022-03-15
Author: Carl Witthoft
Maintainer: Carl Witthoft <carl@witthoft.com>
Description: This function converts mfpr, numeric, or character strings representing numbers to bigq format without loss of precision.
License: LGPL-3
Imports: Rmpfr, gmp, methods
NeedsCompilation: no
Packaged: 2022-03-28 10:17:43 UTC; cgw
Repository: CRAN
Date/Publication: 2022-03-29 08:10:05 UTC

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New package bkmrhat with initial version 1.1.3
Package: bkmrhat
Title: Parallel Chain Tools for Bayesian Kernel Machine Regression
Version: 1.1.3
Date: 2022-03-29
Author: Alexander Keil [aut, cre]
Maintainer: Alexander Keil <akeil@unc.edu>
Description: Bayesian kernel machine regression (from the 'bkmr' package) is a Bayesian semi-parametric generalized linear model approach under identity and probit links. There are a number of functions in this package that extend Bayesian kernel machine regression fits to allow multiple-chain inference and diagnostics, which leverage functions from the 'future', 'rstan', and 'coda' packages. Reference: Bobb, J. F., Henn, B. C., Valeri, L., & Coull, B. A. (2018). Statistical software for analyzing the health effects of multiple concurrent exposures via Bayesian kernel machine regression. ; <doi:10.1186/s12940-018-0413-y>.
License: GPL (>= 3)
Depends: coda, R (>= 3.5.0)
Imports: bkmr, data.table, future, rstan
Suggests: knitr, markdown
VignetteBuilder: knitr
Encoding: UTF-8
Language: en-US
NeedsCompilation: no
Packaged: 2022-03-29 07:54:16 UTC; akeil
Repository: CRAN
Date/Publication: 2022-03-29 08:50:05 UTC

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New package timbr with initial version 0.1.0
Package: timbr
Title: Forest Data Frames
Version: 0.1.0
Description: Provides data frames for forest (or tree) data structures. You can create forest data structures from data frames and process them based on their hierarchies.
License: MIT + file LICENSE
Encoding: UTF-8
Imports: dplyr, memoise, pillar, purrr, rlang, tibble, tidygraph, tidyselect, vctrs
Suggests: covr, testthat (>= 3.0.0), tidyr
URL: https://github.com/UchidaMizuki/timbr
BugReports: https://github.com/UchidaMizuki/timbr/issues
NeedsCompilation: no
Packaged: 2022-03-26 15:42:28 UTC; Mizuki
Author: Mizuki Uchida [aut, cre]
Maintainer: Mizuki Uchida <uchidamizuki@vivaldi.net>
Repository: CRAN
Date/Publication: 2022-03-29 07:20:02 UTC

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New package sRdpData with initial version 0.1.0
Package: sRdpData
Title: Strategies of Resistance Data Project
Version: 0.1.0
Author: Harriet Jane Goers
Maintainer: Harriet Jane Goers <hgoers@umd.edu>
Description: Provides you with easy, programmatic access to SRDP data.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
URL: https://github.com/hgoers/sRdpData
BugReports: https://github.com/hgoers/sRdpData/issues
Depends: R (>= 2.10)
Imports: tibble, dplyr, magrittr, rlang
Suggests: testthat
NeedsCompilation: no
Packaged: 2022-03-27 19:30:36 UTC; harrietgoers
Repository: CRAN
Date/Publication: 2022-03-29 07:30:05 UTC

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Package spgwr updated to version 0.6-35 with previous version 0.6-34 dated 2020-08-26

Title: Geographically Weighted Regression
Description: Functions for computing geographically weighted regressions are provided, based on work by Chris Brunsdon, Martin Charlton and Stewart Fotheringham.
Author: Roger Bivand [cre, aut] , Danlin Yu [aut], Tomoki Nakaya [ctb], Miquel-Angel Garcia-Lopez [ctb]
Maintainer: Roger Bivand <Roger.Bivand@nhh.no>

Diff between spgwr versions 0.6-34 dated 2020-08-26 and 0.6-35 dated 2022-03-29

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Package spdep updated to version 1.2-3 with previous version 1.2-2 dated 2022-01-28

Title: Spatial Dependence: Weighting Schemes, Statistics
Description: A collection of functions to create spatial weights matrix objects from polygon 'contiguities', from point patterns by distance and tessellations, for summarizing these objects, and for permitting their use in spatial data analysis, including regional aggregation by minimum spanning tree; a collection of tests for spatial 'autocorrelation', including global 'Morans I' and 'Gearys C' proposed by 'Cliff' and 'Ord' (1973, ISBN: 0850860369) and (1981, ISBN: 0850860814), 'Hubert/Mantel' general cross product statistic, Empirical Bayes estimates and 'Assunção/Reis' (1999) <doi:10.1002/(SICI)1097-0258(19990830)18:16%3C2147::AID-SIM179%3E3.0.CO;2-I> Index, 'Getis/Ord' G ('Getis' and 'Ord' 1992) <doi:10.1111/j.1538-4632.1992.tb00261.x> and multicoloured join count statistics, 'APLE' ('Li 'et al.' ) <doi:10.1111/j.1538-4632.2007.00708.x>, local 'Moran's I', 'Gearys C' ('Anselin' 1995) <doi:10.1111/j.1538-4632.1995.tb00338.x> and 'Getis/Ord' G ('Ord' and 'Getis' 1995) <doi:10.1111/j.1538-4632.1995.tb00912.x>, 'saddlepoint' approximations ('Tiefelsdorf' 2002) <doi:10.1111/j.1538-4632.2002.tb01084.x> and exact tests for global and local 'Moran's I' ('Bivand et al.' 2009) <doi:10.1016/j.csda.2008.07.021> and 'LOSH' local indicators of spatial heteroscedasticity ('Ord' and 'Getis') <doi:10.1007/s00168-011-0492-y>. The implementation of most of the measures is described in 'Bivand' and 'Wong' (2018) <doi:10.1007/s11749-018-0599-x>, with further extensions in 'Bivand' (2022) <doi:10.1111/gean.12319>. From 'spdep' and 'spatialreg' versions >= 1.2-1, the model fitting functions previously present in this package are defunct in 'spdep' and may be found in 'spatialreg'.
Author: Roger Bivand [cre, aut] , Micah Altman [ctb], Luc Anselin [ctb], Renato Assunção [ctb], Olaf Berke [ctb], Guillaume Blanchet [ctb], Marilia Carvalho [ctb], Bjarke Christensen [ctb], Yongwan Chun [ctb], Carsten Dormann [ctb], Stephane Dray [ctb], Virg [...truncated...]
Maintainer: Roger Bivand <Roger.Bivand@nhh.no>

Diff between spdep versions 1.2-2 dated 2022-01-28 and 1.2-3 dated 2022-03-29

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Package spatstat.geom updated to version 2.4-0 with previous version 2.3-2 dated 2022-02-12

Title: Geometrical Functionality of the 'spatstat' Family
Description: Defines spatial data types and supports geometrical operations on them. Data types include point patterns, windows (domains), pixel images, line segment patterns, tessellations and hyperframes. Capabilities include creation and manipulation of data (using command line or graphical interaction), plotting, geometrical operations (rotation, shift, rescale, affine transformation), convex hull, discretisation and pixellation, Dirichlet tessellation, Delaunay triangulation, pairwise distances, nearest-neighbour distances, distance transform, morphological operations (erosion, dilation, closing, opening), quadrat counting, geometrical measurement, geometrical covariance, colour maps, calculus on spatial domains, Gaussian blur, level sets of images, transects of images, intersections between objects, minimum distance matching. (Excludes spatial data on a network, which are supported by the package 'spatstat.linnet'.)
Author: Adrian Baddeley [aut, cre], Rolf Turner [aut], Ege Rubak [aut], Tilman Davies [ctb], Ute Hahn [ctb], Abdollah Jalilian [ctb], Sebastian Meyer [ctb], Suman Rakshit [ctb], Dominic Schuhmacher [ctb], Rasmus Waagepetersen [ctb]
Maintainer: Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>

Diff between spatstat.geom versions 2.3-2 dated 2022-02-12 and 2.4-0 dated 2022-03-29

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 38 files changed, 669 insertions(+), 317 deletions(-)

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Package spatstat.data updated to version 2.1-4 with previous version 2.1-2 dated 2021-12-16

Title: Datasets for 'spatstat' Family
Description: Contains all the datasets for the 'spatstat' family of packages.
Author: Adrian Baddeley [aut, cre] , Rolf Turner [aut] , Ege Rubak [aut] , W Aherne [ctb], Freda Alexander [ctb], Qi Wei Ang [ctb], Sourav Banerjee [ctb], Mark Berman [ctb], R Bernhardt [ctb], Thomas Berndtsen [ctb], Andrew Bevan [ctb], Jeffrey Betts [ctb], [...truncated...]
Maintainer: Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>

Diff between spatstat.data versions 2.1-2 dated 2021-12-16 and 2.1-4 dated 2022-03-29

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 86 files changed, 186 insertions(+), 104 deletions(-)

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Permanent link

New package saeMSPE with initial version 1.0
Package: saeMSPE
Title: Compute MSPE Estimates for the Fay Herriot Model and Nested Error Regression Model
Version: 1.0
Date: 2022-03-27
Maintainer: Peiwen Xiao <2569613200@qq.com>
Description: We describe a new R package entitled 'saeMSPE' for the well-known Fay Herriot model and nested error regression model in small area estimation. Based on this package, it is possible to easily compute various common mean squared predictive error (MSPE) estimators, as well as several existing variance component predictors as a byproduct, for these two models.
License: GPL (>= 2)
Depends: Matrix
Imports: Rcpp (>= 1.0.7), smallarea
LinkingTo: Rcpp, RcppArmadillo
Encoding: UTF-8
NeedsCompilation: yes
Packaged: 2022-03-27 12:39:16 UTC; 25696
Author: Peiwen Xiao [aut, cre], Xiaohui Liu [aut], Yuzi Liu [aut], Shaochu Liu [aut], Jiming Jiang [ths]
Repository: CRAN
Date/Publication: 2022-03-29 07:30:02 UTC

More information about saeMSPE at CRAN
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Package RcppCWB updated to version 0.5.2 with previous version 0.5.1 dated 2022-03-06

Title: 'Rcpp' Bindings for the 'Corpus Workbench' ('CWB')
Description: 'Rcpp' Bindings for the C code of the 'Corpus Workbench' ('CWB'), an indexing and query engine to efficiently analyze large corpora (<https://cwb.sourceforge.io>). 'RcppCWB' is licensed under the GNU GPL-3, in line with the GPL-3 license of the 'CWB' (<https://www.r-project.org/Licenses/GPL-3>). The 'CWB' relies on 'pcre' (BSD license, see <http://www.pcre.org/licence.txt>) and 'GLib' (LGPL license, see <https://www.gnu.org/licenses/lgpl-3.0.en.html>). See the file LICENSE.note for further information. The package includes modified code of the 'rcqp' package (GPL-2, see <https://cran.r-project.org/package=rcqp>). The original work of the authors of the 'rcqp' package is acknowledged with great respect, and they are listed as authors of this package. To achieve cross-platform portability (including Windows), using 'Rcpp' for wrapper code is the approach used by 'RcppCWB'.
Author: Andreas Blaette [aut, cre], Bernard Desgraupes [aut], Sylvain Loiseau [aut], Oliver Christ [ctb], Bruno Maximilian Schulze [ctb], Stefan Evert [ctb], Arne Fitschen [ctb], Jeroen Ooms [ctb], Marius Bertram [ctb], Tomas Kalibera [ctb]
Maintainer: Andreas Blaette <andreas.blaette@uni-due.de>

Diff between RcppCWB versions 0.5.1 dated 2022-03-06 and 0.5.2 dated 2022-03-29

 RcppCWB-0.5.1/RcppCWB/man/corpus_data_dir.Rd                           |only
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 RcppCWB-0.5.2/RcppCWB/R/RcppExports.R                                  |   32 +
 RcppCWB-0.5.2/RcppCWB/R/cl.R                                           |  114 +++-
 RcppCWB-0.5.2/RcppCWB/R/region_matrix.R                                |   22 
 RcppCWB-0.5.2/RcppCWB/inst/extdata/cwb/indexed_corpora/reuters/info.md |    5 
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 RcppCWB-0.5.2/RcppCWB/inst/include/RcppCWB_RcppExports.h               |  147 +++++
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 RcppCWB-0.5.2/RcppCWB/src/addons.cpp                                   |   20 
 RcppCWB-0.5.2/RcppCWB/src/cl.cpp                                       |  176 ++++++
 RcppCWB-0.5.2/RcppCWB/tests/testthat/test_region_matrix_to_ids.R       |   16 
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 18 files changed, 847 insertions(+), 28 deletions(-)

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Package MLZ updated to version 0.1.4 with previous version 0.1.3 dated 2019-09-20

Title: Mean Length-Based Estimators of Mortality using TMB
Description: Estimation functions and diagnostic tools for mean length-based total mortality estimators based on Gedamke and Hoenig (2006) <doi:10.1577/T05-153.1>.
Author: Quang Huynh [aut, cre], Todd Gedamke [ctb], Amy Then [ctb]
Maintainer: Quang Huynh <quang@bluematterscience.com>

Diff between MLZ versions 0.1.3 dated 2019-09-20 and 0.1.4 dated 2022-03-29

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 23 files changed, 321 insertions(+), 171 deletions(-)

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New package i18n with initial version 0.1.0
Package: i18n
Version: 0.1.0
Title: Internationalization Data from the 'Unicode CLDR' in Tabular Form
Description: Up-to-date data from the 'Unicode CLDR Project' (where 'CLDR' stands for 'Common Locale Data Repository') are available here as a series of easy-to-parse datasets. Several functions are provided for extracting key elements from the tabular datasets.
License: MIT + file LICENSE
URL: https://github.com/rich-iannone/i18n
BugReports: https://github.com/rich-iannone/i18n/issues
Encoding: UTF-8
LazyData: true
Depends: R (>= 3.2)
Imports: magrittr
Suggests: lintr, testthat (>= 3.0.0)
NeedsCompilation: no
Packaged: 2022-03-28 05:14:01 UTC; rich
Author: Richard Iannone [aut, cre]
Maintainer: Richard Iannone <riannone@me.com>
Repository: CRAN
Date/Publication: 2022-03-29 07:40:08 UTC

More information about i18n at CRAN
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New package diemr with initial version 1.0
Package: diemr
Title: Diagnostic Index Expectation Maximisation in R
Version: 1.0
Description: Likelihood-based genome polarisation finds which alleles of genomic markers belong to which side of the barrier. Co-estimates which individuals belong to either side of the barrier and barrier strength. Uses expectation maximisation in likelihood framework.
License: GPL (>= 3)
Encoding: UTF-8
Suggests: testthat (>= 3.0.0), knitr, rmarkdown
Imports: zoo
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2022-03-28 06:33:24 UTC; martinkova
Author: Natalia Martinkova [aut, cre] , Stuart Baird [aut]
Maintainer: Natalia Martinkova <martinkova@ivb.cz>
Repository: CRAN
Date/Publication: 2022-03-29 07:50:06 UTC

More information about diemr at CRAN
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Package dbarts updated to version 0.9-22 with previous version 0.9-20 dated 2021-10-08

Title: Discrete Bayesian Additive Regression Trees Sampler
Description: Fits Bayesian additive regression trees (BART; Chipman, George, and McCulloch (2010) <doi:10.1214/09-AOAS285>) while allowing the updating of predictors or response so that BART can be incorporated as a conditional model in a Gibbs/Metropolis-Hastings sampler. Also serves as a drop-in replacement for package 'BayesTree'.
Author: Vincent Dorie [aut, cre] , Hugh Chipman [aut], Robert McCulloch [aut], Armon Dadgar [ctb] , R Core Team [ctb] , Guido U Draheim [ctb] , Maarten Bosmans [ctb] , Christophe Tournayre [ctb] , Michael Petch [ctb] , Rafael de Lucena Valle [ctb] , Steven G [...truncated...]
Maintainer: Vincent Dorie <vdorie@gmail.com>

Diff between dbarts versions 0.9-20 dated 2021-10-08 and 0.9-22 dated 2022-03-29

 DESCRIPTION                                 |   10 
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 NAMESPACE                                   |    2 
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Package mispitools updated to version 0.2.1 with previous version 0.2.0 dated 2022-03-26

Title: Missing Person Identification Tools
Description: Open-source software for computing Likelihood ratios thresholds and error rates in DNA kinship testing. Marsico FL. et al (2021) <doi:10.1016/j.fsigen.2021.102519>.
Author: Franco Marsico [aut, cre]
Maintainer: Franco Marsico <franco.lmarsico@gmail.com>

Diff between mispitools versions 0.2.0 dated 2022-03-26 and 0.2.1 dated 2022-03-29

 DESCRIPTION        |    6 +++---
 MD5                |   10 +++++-----
 R/combLR.R         |    4 ++--
 R/makePOIprelim.R  |    4 ++--
 R/simLRprelim.R    |   53 +++++++++++++++++++++++++++++++++++++++++++++++++----
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 6 files changed, 75 insertions(+), 18 deletions(-)

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Package insight updated to version 0.17.0 with previous version 0.16.0 dated 2022-02-16

Title: Easy Access to Model Information for Various Model Objects
Description: A tool to provide an easy, intuitive and consistent access to information contained in various R models, like model formulas, model terms, information about random effects, data that was used to fit the model or data from response variables. 'insight' mainly revolves around two types of functions: Functions that find (the names of) information, starting with 'find_', and functions that get the underlying data, starting with 'get_'. The package has a consistent syntax and works with many different model objects, where otherwise functions to access these information are missing.
Author: Daniel Luedecke [aut, cre] , Dominique Makowski [aut, ctb] , Indrajeet Patil [aut, ctb] , Philip Waggoner [aut, ctb] , Mattan S. Ben-Shachar [aut, ctb] , Brenton M. Wiernik [aut] , Vincent Arel-Bundock [ctb] , Alex Hayes [rev]
Maintainer: Daniel Luedecke <d.luedecke@uke.de>

Diff between insight versions 0.16.0 dated 2022-02-16 and 0.17.0 dated 2022-03-29

 insight-0.16.0/insight/man/get_predicted_ci.Rd                      |only
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 insight-0.17.0/insight/NEWS.md                                      |   75 ++
 insight-0.17.0/insight/R/check_if_installed.R                       |   86 ++
 insight-0.17.0/insight/R/clean_names.R                              |   71 +-
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 insight-0.17.0/insight/R/color_if.R                                 |    2 
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 insight-0.17.0/insight/R/find_offset.R                              |   11 
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Package evalITR updated to version 0.3.0 with previous version 0.2.2 dated 2021-10-16

Title: Evaluating Individualized Treatment Rules
Description: Provides various statistical methods for evaluating Individualized Treatment Rules under randomized data. The provided metrics include Population Average Value (PAV), Population Average Prescription Effect (PAPE), Area Under Prescription Effect Curve (AUPEC). It also provides the tools to analyze Individualized Treatment Rules under budget constraints. Detailed reference in Imai and Li (2019) <arXiv:1905.05389>.
Author: Michael Lingzhi Li [aut, cre], Kosuke Imai [aut]
Maintainer: Michael Lingzhi Li <mlli@mit.edu>

Diff between evalITR versions 0.2.2 dated 2021-10-16 and 0.3.0 dated 2022-03-29

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New package elfgen with initial version 2.2.8
Package: elfgen
Title: Ecological Limit Function Model Generation, Analysis, and Visualization using 'ggplot2' and Statistical Methods
Version: 2.2.8
Maintainer: Joseph Kleiner <joseph.d.kleiner@gmail.com>
Description: A toolset for generating Ecological Limit Function (ELF) models and evaluating potential species loss resulting from flow change, based on the "elfgen" framework. ELFs describe the relation between aquatic species richness (fish or benthic macroinvertebrates) and stream size characteristics (streamflow or drainage area). Journal publications are available outlining framework methodology (Kleiner et al. (2020) <doi:10.1111/1752-1688.12876>) and application (Rapp et al. (2020) <doi:10.1111/1752-1688.12877>).
Imports: utils, RJSONIO, stringr, quantreg, stats, ggplot2, testit, scales, sqldf, curl, httr
License: MIT + file LICENSE
URL: https://github.com/HARPgroup/elfgen
Suggests: testthat (>= 2.1.0)
NeedsCompilation: no
Packaged: 2022-03-28 19:08:14 UTC; jklei
Author: Joseph Kleiner [aut, cre]
Repository: CRAN
Date/Publication: 2022-03-29 06:50:02 UTC

More information about elfgen at CRAN
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Package Mapinguari (with last version 1.0.0) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2019-09-30 1.0.0

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Package worldfootballR (with last version 0.5.1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2022-03-25 0.5.1
2022-03-21 0.5.0
2022-02-08 0.4.10
2022-01-16 0.4.9
2022-01-05 0.4.8
2021-11-25 0.4.5

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Package SoundShape (with last version 1.1.0) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2021-03-31 1.1.0
2020-10-29 1.0

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Package DET (with last version 3.0.1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2021-04-02 3.0.1
2021-04-01 3.0.0
2020-03-29 2.0.2
2019-06-14 2.0.1
2019-05-30 2.0.0
2019-05-23 1.0.1
2019-04-09 1.0.0

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