Title: Tipping Point Analyses
Description: The strength of evidence provided by epidemiological and observational
studies is inherently limited by the potential for unmeasured confounding.
We focus on three key quantities: the observed bound of the confidence interval
closest to the null, a plausible residual effect size for an unmeasured continuous
or binary confounder, and a realistic mean difference or prevalence difference for
this hypothetical confounder. Building on the methods put forth by
Lin, Psaty, & Kronmal (1998) <doi:10.2307/2533848>, we can use these quantities to
assess how an unmeasured confounder may tip our result to insignificance, rendering the
study inconclusive.
Author: Lucy D'Agostino McGowan
Maintainer: Lucy D'Agostino McGowan <lucydagostino@gmail.com>
Diff between tipr versions 0.4.0 dated 2022-04-16 and 0.4.1 dated 2022-05-05
tipr-0.4.0/tipr/R/tip_lm.R |only tipr-0.4.0/tipr/man/tip_lm.Rd |only tipr-0.4.1/tipr/DESCRIPTION | 6 +++--- tipr-0.4.1/tipr/MD5 | 28 ++++++++++++++-------------- tipr-0.4.1/tipr/NAMESPACE | 10 +++++++++- tipr-0.4.1/tipr/NEWS.md | 5 +++++ tipr-0.4.1/tipr/R/adjust_coefficient.R | 16 ++++++++++++++++ tipr-0.4.1/tipr/R/tip.R | 11 +++++++++++ tipr-0.4.1/tipr/R/tip_coef.R |only tipr-0.4.1/tipr/man/adjust_coef.Rd | 3 +++ tipr-0.4.1/tipr/man/adjust_hr.Rd | 9 +++++++++ tipr-0.4.1/tipr/man/adjust_or.Rd | 9 +++++++++ tipr-0.4.1/tipr/man/adjust_rr.Rd | 3 +++ tipr-0.4.1/tipr/man/tip_coef.Rd |only tipr-0.4.1/tipr/man/tip_hr.Rd | 9 +++++++++ tipr-0.4.1/tipr/man/tip_or.Rd | 9 +++++++++ tipr-0.4.1/tipr/man/tip_rr.Rd | 8 ++++++++ 17 files changed, 108 insertions(+), 18 deletions(-)
Title: Landscape Visualizations in R and 'Unity'
Description: Functions for the retrieval, manipulation, and visualization
of 'geospatial' data, with an aim towards producing '3D' landscape
visualizations in the 'Unity' '3D' rendering engine. Functions are
also provided for retrieving elevation data and base map tiles from
the 'USGS' National Map <https://apps.nationalmap.gov/services/>.
Author: Michael Mahoney [aut, cre] ,
Mike Johnson [rev] for rOpenSci,
see <https://github.com/ropensci/software-review/issues/416>),
Sydney Foks [rev] for rOpenSci,
see <https://github.com/ropensci/software-review/issues/416>)
Maintainer: Michael Mahoney <mike.mahoney.218@gmail.com>
Diff between terrainr versions 0.6.1 dated 2022-02-10 and 0.7.0 dated 2022-05-05
terrainr-0.6.1/terrainr/tests/testthat/test-1-raster_to_raw_tiles.R |only terrainr-0.7.0/terrainr/DESCRIPTION | 52 +-- terrainr-0.7.0/terrainr/MD5 | 86 +++--- terrainr-0.7.0/terrainr/NAMESPACE | 5 terrainr-0.7.0/terrainr/NEWS.md | 35 ++ terrainr-0.7.0/terrainr/R/add_bbox_buffer.R | 53 +++ terrainr-0.7.0/terrainr/R/geom_spatial_rgb.R | 80 ++++- terrainr-0.7.0/terrainr/R/georeference_overlay.R | 23 - terrainr-0.7.0/terrainr/R/get_tiles.R | 50 ++- terrainr-0.7.0/terrainr/R/hit_api.R | 9 terrainr-0.7.0/terrainr/R/make_manifest.R | 39 ++ terrainr-0.7.0/terrainr/R/make_unity.R |only terrainr-0.7.0/terrainr/R/merge_rasters.R | 11 terrainr-0.7.0/terrainr/R/raster_to_raw_tiles.R | 136 ---------- terrainr-0.7.0/terrainr/R/utils.R | 2 terrainr-0.7.0/terrainr/R/vector_to_overlay.R | 22 - terrainr-0.7.0/terrainr/README.md | 31 +- terrainr-0.7.0/terrainr/build/vignette.rds |binary terrainr-0.7.0/terrainr/inst/CITATION | 2 terrainr-0.7.0/terrainr/inst/doc/overview.html | 1 terrainr-0.7.0/terrainr/inst/doc/unity_instructions.R | 21 - terrainr-0.7.0/terrainr/inst/doc/unity_instructions.Rmd | 78 +---- terrainr-0.7.0/terrainr/inst/doc/unity_instructions.html | 25 - terrainr-0.7.0/terrainr/man/addbuff.Rd | 33 +- terrainr-0.7.0/terrainr/man/geom_spatial_rgb.Rd | 22 - terrainr-0.7.0/terrainr/man/georeference_overlay.Rd | 11 terrainr-0.7.0/terrainr/man/get_tiles.Rd | 17 + terrainr-0.7.0/terrainr/man/make_unity.Rd |only terrainr-0.7.0/terrainr/man/merge_rasters.Rd | 12 terrainr-0.7.0/terrainr/man/point_from_distance.Rd | 4 terrainr-0.7.0/terrainr/man/raster_to_raw_tiles.Rd | 2 terrainr-0.7.0/terrainr/man/terrainr_bounding_box.Rd | 8 terrainr-0.7.0/terrainr/man/unity_crops.Rd | 8 terrainr-0.7.0/terrainr/man/vector_to_overlay.Rd | 2 terrainr-0.7.0/terrainr/tests/testthat/test-1-make_manifest.R | 15 + terrainr-0.7.0/terrainr/tests/testthat/test-2-get_tiles_3dep.R | 14 - terrainr-0.7.0/terrainr/tests/testthat/test-4-merge_rasters.R | 44 ++- terrainr-0.7.0/terrainr/tests/testthat/test-add_bbox_buffer.R | 2 terrainr-0.7.0/terrainr/tests/testthat/test-geom_spatial_rgb.R | 46 ++- terrainr-0.7.0/terrainr/tests/testthat/test-georeference_overlay.R | 18 - terrainr-0.7.0/terrainr/tests/testthat/test-get_tiles.R | 48 ++- terrainr-0.7.0/terrainr/tests/testthat/test-make_unity.R |only terrainr-0.7.0/terrainr/tests/testthat/testdata/manifest_ort.png |binary terrainr-0.7.0/terrainr/tests/testthat/testdata/raster_to_raw_1.png |binary terrainr-0.7.0/terrainr/tests/testthat/testdata/vto_poly.png |binary terrainr-0.7.0/terrainr/vignettes/unity_instructions.Rmd | 78 +---- 46 files changed, 588 insertions(+), 557 deletions(-)
Title: Multiscale Change-Point Inference
Description: Allows fitting of step-functions to univariate serial data where neither the number of jumps nor their positions is known by implementing the multiscale regression estimators SMUCE (K. Frick, A. Munk and H. Sieling, 2014) <doi:10.1111/rssb.12047> and HSMUCE (F. Pein, H. Sieling and A. Munk, 2017) <doi:10.1111/rssb.12202>. In addition, confidence intervals for the change-point locations and bands for the unknown signal can be obtained.
Author: Pein Florian [aut, cre],
Thomas Hotz [aut],
Hannes Sieling [aut],
Timo Aspelmeier [ctb]
Maintainer: Pein Florian <f.pein@lancaster.ac.uk>
Diff between stepR versions 2.1-1 dated 2020-08-26 and 2.1-3 dated 2022-05-05
ChangeLog | 12 ++++++++ DESCRIPTION | 10 +++---- MD5 | 40 ++++++++++++++--------------- build/vignette.rds |binary inst/doc/StepR.pdf |binary man/MRC.Rd | 8 ++--- man/computeBounds.Rd | 4 +- man/critVal.Rd | 2 - man/intervalSystem.Rd | 2 - man/monteCarloSimulation.Rd | 3 +- man/stepFit.Rd | 4 +- man/stepR-package.Rd | 6 ++-- man/stepfitClass.Rd | 12 ++++---- src/DataHjsmurfLR.cpp | 10 +++---- src/DataJsmurfLR.cpp | 4 +- src/DataLR.cpp | 4 +- src/RcppExports.cpp | 5 +++ src/choleskyDecomposition.cpp | 2 - tests/tests.R | 2 + tests/testthat/test-critVal.R | 4 ++ tests/testthat/test-monteCarloSimulation.R | 10 +++++++ 21 files changed, 89 insertions(+), 55 deletions(-)
Title: Visualize the Climate Scenario Alignment of a Financial
Portfolio
Description: Create plots to visualize the alignment of a corporate
lending financial portfolio to climate change scenarios based on
climate indicators (production and emission intensities) across key
climate relevant sectors of the 'PACTA' methodology (Paris Agreement
Capital Transition Assessment; <https://2degrees-investing.org/>).
Financial institutions use 'PACTA' to study how their capital
allocation decisions align with climate change mitigation goals.
Author: Monika Furdyna [aut, ctr, cre]
,
Mauro Lepore [aut, ctr] ,
Alex Axthelm [aut, ctr] ,
2 Degrees Investing Initiative [cph, fnd]
Maintainer: Monika Furdyna <monika.furdyna@gmail.com>
Diff between r2dii.plot versions 0.2.0 dated 2021-10-16 and 0.3.0 dated 2022-05-05
DESCRIPTION | 11 +- MD5 | 79 ++++++++++--------- NAMESPACE | 6 + NEWS.md | 36 ++++++++ R/plot_emission_intensity.R | 7 + R/plot_techmix.R | 26 +++++- R/plot_trajectory.R | 79 +++++++++++-------- R/qplot_emission_intensity.R | 2 R/qplot_trajectory.R | 28 ++++-- R/r2dii.plot-package.R | 4 R/to_title.R | 51 ++++++++---- R/utils.R | 31 +++++-- README.md | 29 ++++--- data/market_share.rda |binary data/sda.rda |binary man/figures/README-unnamed-chunk-2-1.png |binary man/figures/README-unnamed-chunk-3-1.png |binary man/figures/logo.svg |only man/market_share.Rd | 2 man/plot_emission_intensity.Rd | 2 man/plot_trajectory.Rd | 18 +++- man/qplot_emission_intensity.Rd | 2 man/r2dii.plot-package.Rd | 1 man/sda.Rd | 2 man/to_title.Rd | 10 +- tests/testthat/Rplots.pdf |only tests/testthat/_snaps/market_share.md | 28 +++--- tests/testthat/_snaps/plot_emission_intensity.md | 10 ++ tests/testthat/_snaps/plot_techmix.md | 18 +++- tests/testthat/_snaps/plot_trajectory.md |only tests/testthat/_snaps/qplot_emission_intensity.md | 2 tests/testthat/_snaps/qplot_trajectory.md | 19 +--- tests/testthat/_snaps/sda.md | 28 +++--- tests/testthat/test-market_share.R | 2 tests/testthat/test-plot_emission_intensity.R | 31 ++++++- tests/testthat/test-plot_techmix.R | 37 ++++++++- tests/testthat/test-plot_trajectory.R | 89 ++++++++++++++++++++++ tests/testthat/test-qplot_emission_intensity.R | 14 +-- tests/testthat/test-qplot_techmix.R | 4 tests/testthat/test-qplot_trajectory.R | 34 +++----- tests/testthat/test-sda.R | 11 +- tests/testthat/test-to_title.R | 24 ++--- 42 files changed, 543 insertions(+), 234 deletions(-)
Title: Tools to Match Corporate Lending Portfolios with Climate Data
Description: These tools implement in R a fundamental part of the software
'PACTA' (Paris Agreement Capital Transition Assessment), which is a
free tool that calculates the alignment between financial portfolios
and climate scenarios (<https://2degrees-investing.org/>). Financial
institutions use 'PACTA' to study how their capital allocation
decisions align with climate change mitigation goals. This package
matches data from corporate lending portfolios to asset level data
from market-intelligence databases (e.g. power plant capacities,
emission factors, etc.). This is the first step to assess if a
financial portfolio aligns with climate goals.
Author: Jackson Hoffart [aut, cre] ,
Mauro Lepore [aut, ctr] ,
Klaus Hagedorn [aut],
Florence Palandri [aut],
Evgeny Petrovsky [aut],
2 Degrees Investing Initiative [cph, fnd]
Maintainer: Jackson Hoffart <jackson.hoffart@gmail.com>
Diff between r2dii.match versions 0.0.11 dated 2021-09-23 and 0.1.0 dated 2022-05-05
r2dii.match-0.0.11/r2dii.match/R/restructure_ald.R |only r2dii.match-0.0.11/r2dii.match/tests/testthat/test-restructure_ald.R |only r2dii.match-0.1.0/r2dii.match/DESCRIPTION | 37 - r2dii.match-0.1.0/r2dii.match/MD5 | 49 +- r2dii.match-0.1.0/r2dii.match/NAMESPACE | 1 r2dii.match-0.1.0/r2dii.match/NEWS.md | 4 r2dii.match-0.1.0/r2dii.match/R/imports.R | 2 r2dii.match-0.1.0/r2dii.match/R/match_name.R | 83 ++-- r2dii.match-0.1.0/r2dii.match/R/prioritize.R | 31 + r2dii.match-0.1.0/r2dii.match/R/r2dii.match-package.R | 1 r2dii.match-0.1.0/r2dii.match/R/restructure_abcd.R |only r2dii.match-0.1.0/r2dii.match/README.md | 66 +-- r2dii.match-0.1.0/r2dii.match/man/figures |only r2dii.match-0.1.0/r2dii.match/man/match_name.Rd | 39 + r2dii.match-0.1.0/r2dii.match/man/prioritize.Rd | 8 r2dii.match-0.1.0/r2dii.match/man/r2dii.match-package.Rd | 18 r2dii.match-0.1.0/r2dii.match/tests/testthat/_snaps/add_sector_and_borderline.md | 4 r2dii.match-0.1.0/r2dii.match/tests/testthat/_snaps/match_name.md | 24 - r2dii.match-0.1.0/r2dii.match/tests/testthat/helper-expect_names_match_name.R | 4 r2dii.match-0.1.0/r2dii.match/tests/testthat/helper-fake_lbk.R | 20 r2dii.match-0.1.0/r2dii.match/tests/testthat/test-helper-fake_lbk.R | 4 r2dii.match-0.1.0/r2dii.match/tests/testthat/test-match_name.R | 201 ++++------ r2dii.match-0.1.0/r2dii.match/tests/testthat/test-prioritize.R | 12 r2dii.match-0.1.0/r2dii.match/tests/testthat/test-restructure_abcd.R |only 24 files changed, 325 insertions(+), 283 deletions(-)
Title: Quantile Least Mahalanobis Distance Estimator for Tukey g-&-h
Mixture
Description: Functions for simulation, estimation, and model selection of finite mixtures of Tukey's
g-and-h distributions.
Author: Tingting Zhan [aut, cre, cph],
Inna Chervoneva [ctb]
Maintainer: Tingting Zhan <tingtingzhan@gmail.com>
Diff between QuantileGH versions 0.1.1 dated 2022-01-20 and 0.1.2 dated 2022-05-05
QuantileGH-0.1.1/QuantileGH/R/0S4GenericDoc.R |only QuantileGH-0.1.1/QuantileGH/R/Hoaglin_GH.R |only QuantileGH-0.1.1/QuantileGH/R/clust_fmx.R |only QuantileGH-0.1.1/QuantileGH/R/plot.fmx.R |only QuantileGH-0.1.1/QuantileGH/man/Hoaglin_GH.Rd |only QuantileGH-0.1.1/QuantileGH/man/allequal.Rd |only QuantileGH-0.1.1/QuantileGH/man/clust_fmx.Rd |only QuantileGH-0.1.1/QuantileGH/man/plot_fmx.Rd |only QuantileGH-0.1.1/QuantileGH/man/show_S4.Rd |only QuantileGH-0.1.2/QuantileGH/DESCRIPTION | 20 QuantileGH-0.1.2/QuantileGH/MD5 | 109 +- QuantileGH-0.1.2/QuantileGH/NAMESPACE | 26 QuantileGH-0.1.2/QuantileGH/NEWS.md | 5 QuantileGH-0.1.2/QuantileGH/R/0Int_base_stats.R | 107 +- QuantileGH-0.1.2/QuantileGH/R/0setS4_QuantileGH.R | 68 - QuantileGH-0.1.2/QuantileGH/R/CvM_test.R | 35 QuantileGH-0.1.2/QuantileGH/R/KL_dist.R | 8 QuantileGH-0.1.2/QuantileGH/R/LikRatio.R | 42 - QuantileGH-0.1.2/QuantileGH/R/QLMDe.R | 381 ++++++---- QuantileGH-0.1.2/QuantileGH/R/QLMDinit.R |only QuantileGH-0.1.2/QuantileGH/R/QLMDp.R | 32 QuantileGH-0.1.2/QuantileGH/R/QuantileGH_info.R | 18 QuantileGH-0.1.2/QuantileGH/R/StepK_fmx.R | 113 +- QuantileGH-0.1.2/QuantileGH/R/Step_fmx.R | 62 - QuantileGH-0.1.2/QuantileGH/R/TukeyGH.R | 54 - QuantileGH-0.1.2/QuantileGH/R/autoplot.fmx.R |only QuantileGH-0.1.2/QuantileGH/R/fitdist_ext.R |only QuantileGH-0.1.2/QuantileGH/R/fmx.R | 107 +- QuantileGH-0.1.2/QuantileGH/R/fmx_constraint.R |only QuantileGH-0.1.2/QuantileGH/R/ks_test.R | 23 QuantileGH-0.1.2/QuantileGH/R/letterValue.R |only QuantileGH-0.1.2/QuantileGH/R/mlogis.R | 29 QuantileGH-0.1.2/QuantileGH/R/reAssign.R | 27 QuantileGH-0.1.2/QuantileGH/R/vuniroot2.R | 41 - QuantileGH-0.1.2/QuantileGH/build/partial.rdb |binary QuantileGH-0.1.2/QuantileGH/man/CvM_test.Rd | 18 QuantileGH-0.1.2/QuantileGH/man/K.fmx.Rd | 10 QuantileGH-0.1.2/QuantileGH/man/KL_dist.Rd | 8 QuantileGH-0.1.2/QuantileGH/man/LikRatio.Rd | 19 QuantileGH-0.1.2/QuantileGH/man/QLMDe.Rd | 41 - QuantileGH-0.1.2/QuantileGH/man/QLMDinit.Rd |only QuantileGH-0.1.2/QuantileGH/man/QLMDp.Rd | 26 QuantileGH-0.1.2/QuantileGH/man/QuantileGH-package.Rd | 12 QuantileGH-0.1.2/QuantileGH/man/S3_fmx_QLMDe.Rd | 53 - QuantileGH-0.1.2/QuantileGH/man/StepK_fmx.Rd | 67 + QuantileGH-0.1.2/QuantileGH/man/Step_fmx.Rd | 21 QuantileGH-0.1.2/QuantileGH/man/TukeyGH.Rd | 54 - QuantileGH-0.1.2/QuantileGH/man/autoplot.fitdist.Rd |only QuantileGH-0.1.2/QuantileGH/man/autoplot_fmx.Rd |only QuantileGH-0.1.2/QuantileGH/man/crossprod_inv.Rd | 10 QuantileGH-0.1.2/QuantileGH/man/drop1_fmx.Rd | 29 QuantileGH-0.1.2/QuantileGH/man/fmx-class.Rd | 19 QuantileGH-0.1.2/QuantileGH/man/fmx.Rd | 51 - QuantileGH-0.1.2/QuantileGH/man/fmx_QLMDe-class.Rd | 28 QuantileGH-0.1.2/QuantileGH/man/fmx_constraint.Rd | 23 QuantileGH-0.1.2/QuantileGH/man/ks_test.Rd | 12 QuantileGH-0.1.2/QuantileGH/man/letterValue.Rd |only QuantileGH-0.1.2/QuantileGH/man/mahalanobis_int.Rd | 12 QuantileGH-0.1.2/QuantileGH/man/mlogis.Rd | 30 QuantileGH-0.1.2/QuantileGH/man/outer_allequal.Rd |only QuantileGH-0.1.2/QuantileGH/man/quantile_vcov.Rd | 8 QuantileGH-0.1.2/QuantileGH/man/reAssign.Rd | 27 QuantileGH-0.1.2/QuantileGH/man/show-fmx-method.Rd |only QuantileGH-0.1.2/QuantileGH/man/sub-fmx-ANY-ANY-ANY-method.Rd | 14 QuantileGH-0.1.2/QuantileGH/man/ud_allequal.Rd |only QuantileGH-0.1.2/QuantileGH/man/vuniroot2.Rd | 33 66 files changed, 1039 insertions(+), 893 deletions(-)
Title: Compare Models with Cross-Validated Log-Likelihood
Description: An implementation of the cross-validated difference in means (CVDM) test by Desmarais and Harden (2014) <doi:10.1007/s11135-013-9884-7> (see also Harden and Desmarais, 2011 <doi:10.1177/1532440011408929>) and the cross-validated median fit (CVMF) test by Desmarais and Harden (2012) <doi:10.1093/pan/mpr042>. These tests use leave-one-out cross-validated log-likelihoods to assist in selecting among model estimations. You can also utilize data from Golder (2010) <doi:10.1177/0010414009341714> and Joshi & Mason (2008) <doi:10.1177/0022343308096155> that are included to facilitate examples from real-world analysis.
Author: Shana Scogin <shanarscogin@gmail.com>, Sarah Petersen <sarahllpetersen@gmail.com>, Jeff Harden <jeff.harden@nd.edu>, Bruce A. Desmarais <bdesmarais@psu.edu>
Maintainer: Shana Scogin <shanarscogin@gmail.com>
Diff between modeLLtest versions 1.0.3 dated 2020-08-07 and 1.0.4 dated 2022-05-05
modeLLtest-1.0.3/modeLLtest/R/citation.R |only modeLLtest-1.0.4/modeLLtest/DESCRIPTION | 10 +-- modeLLtest-1.0.4/modeLLtest/MD5 | 42 +++++++------- modeLLtest-1.0.4/modeLLtest/NEWS.md | 5 + modeLLtest-1.0.4/modeLLtest/R/cvdm.R | 8 +- modeLLtest-1.0.4/modeLLtest/R/cvll.R | 4 - modeLLtest-1.0.4/modeLLtest/R/cvlldiff.R | 6 +- modeLLtest-1.0.4/modeLLtest/R/cvmf.R | 6 +- modeLLtest-1.0.4/modeLLtest/R/govtform_data.R | 8 +- modeLLtest-1.0.4/modeLLtest/R/modeLLtest.R | 2 modeLLtest-1.0.4/modeLLtest/R/nepaldem_data.R | 16 ++--- modeLLtest-1.0.4/modeLLtest/README.md | 4 + modeLLtest-1.0.4/modeLLtest/build/partial.rdb |only modeLLtest-1.0.4/modeLLtest/build/vignette.rds |binary modeLLtest-1.0.4/modeLLtest/inst/doc/getting_started.html | 27 ++++++--- modeLLtest-1.0.4/modeLLtest/man/cvdm.Rd | 8 +- modeLLtest-1.0.4/modeLLtest/man/cvll.Rd | 4 - modeLLtest-1.0.4/modeLLtest/man/cvlldiff.Rd | 4 - modeLLtest-1.0.4/modeLLtest/man/cvmf.Rd | 6 +- modeLLtest-1.0.4/modeLLtest/man/govtform.Rd | 8 +- modeLLtest-1.0.4/modeLLtest/man/modeLLtest.Rd | 2 modeLLtest-1.0.4/modeLLtest/man/nepaldem.Rd | 16 ++--- modeLLtest-1.0.4/modeLLtest/src/RcppExports.cpp | 5 + 23 files changed, 107 insertions(+), 84 deletions(-)
Title: Estimation and Tests of Hierarchical F-Statistics
Description: Estimates hierarchical F-statistics from haploid or
diploid genetic data with any numbers of levels in the hierarchy, following the
algorithm of Yang (Evolution(1998), 52:950).
Tests via randomisations the significance
of each F and variance components, using the likelihood-ratio statistics G
(Goudet et al. (1996) <https://academic.oup.com/genetics/article/144/4/1933/6017091>).
Estimates genetic diversity statistics
for haploid and diploid genetic datasets in various formats, including inbreeding and
coancestry coefficients, and population specific F-statistics following
Weir and Goudet (2017) <https://academic.oup.com/genetics/article/206/4/2085/6072590>.
Author: Jerome Goudet [aut, cre],
Thibaut Jombart [aut],
Zhian N. Kamvar [ctb],
Eric Archer [ctb],
Olivier Hardy [ctb]
Maintainer: Jerome Goudet <jerome.goudet@unil.ch>
Diff between hierfstat versions 0.5-10 dated 2021-11-17 and 0.5-11 dated 2022-05-05
CHANGES | 5 +++ DESCRIPTION | 12 ++++---- MD5 | 48 +++++++++++++++++----------------- R/beta_dosage.R | 2 - R/betas.R | 4 +- R/fsdosage.R | 4 +- R/misc.R | 3 +- R/pairwise.fst.R | 4 ++ R/writebayescan.R | 2 - inst/doc/hierfstat.Rmd | 6 ++-- inst/doc/hierfstat.html | 67 +++++++++++++++++++++++++----------------------- inst/doc/import.html | 59 +++++++++++++++++++++--------------------- man/allele.count.rd | 3 +- man/beta.dosage.Rd | 2 - man/betas.Rd | 4 +- man/fs.dosage.Rd | 4 +- man/genet.dist.Rd | 2 - man/getal.b.Rd | 2 - man/hierfstat.Rd | 2 - man/ind.count.Rd | 2 - man/nb.alleles.rd | 2 - man/pairwise.betas.Rd | 2 - man/pop.freq.Rd | 4 +- man/write.bayescan.Rd | 2 - vignettes/hierfstat.Rmd | 6 ++-- 25 files changed, 135 insertions(+), 118 deletions(-)
Title: Variable Selection for Generalized Linear Mixed Models by
L1-Penalized Estimation
Description: A variable selection approach for generalized linear mixed models by L1-penalized estimation is provided.
Author: Andreas Groll
Maintainer: Andreas Groll <groll@statistik.tu-dortmund.de>
Diff between glmmLasso versions 1.5.1 dated 2017-05-06 and 1.6.0 dated 2022-05-05
DESCRIPTION | 15 MD5 | 37 - NAMESPACE | 6 R/RcppExports.R |only R/family_acat.R | 136 ++--- R/family_cumulative.R | 61 +- R/glmmLasso.r | 33 + R/glmmLasso_RE.R | 989 ++++++++++++++++++------------------- R/glmmLasso_noRE.R | 506 +++++++++--------- R/glmm_final.r | 72 +- R/glmm_final.smooth.r | 74 +- R/glmm_final.smooth_noRE.R | 56 -- R/glmm_final_multi_random.r | 73 +- R/glmm_final_multi_random_smooth.r | 72 +- R/glmm_final_noRE.R | 69 +- R/helpers.R | 60 +- R/logLik.glmmLasso.r | 92 +-- demo/glmmLasso-soccer.r | 131 ++++ man/glmmLasso.rd | 23 src |only 20 files changed, 1334 insertions(+), 1171 deletions(-)
Title: Datasets for Teaching Archaeology and Paleontology
Description: Datasets for teaching quantitative approaches and
modeling in archaeology and paleontology. This package provides
several types of data related to broad topics (cultural evolution,
radiocarbon dating, paleoenvironments, etc.), which can be used to
illustrate statistical methods in the classroom (multivariate data
analysis, compositional data analysis, diversity measurement, etc.).
Author: Nicolas Frerebeau [aut, cre] ,
Brice Lebrun [ctb]
Maintainer: Nicolas Frerebeau
<nicolas.frerebeau@u-bordeaux-montaigne.fr>
Diff between folio versions 1.0.0 dated 2021-02-12 and 1.1.0 dated 2022-05-05
DESCRIPTION | 33 ++++++++++------ MD5 | 66 ++++++++++++++++++-------------- NEWS.md | 8 ++- R/carbon.R | 35 ++++++++--------- R/chemical.R | 101 ++++++++++++++++++++++++++++++++++++++------------ R/chronology.R | 23 +++++------ R/counts.R | 46 +++++++++++----------- R/folio-package.R | 18 ++++---- R/isotopes.R | 77 ++++++++++++++++++++++++++------------ README.md | 26 ++++++++++-- build/partial.rdb |binary data/ngrip2004.rda |only data/nydal1996.rda |binary data/stratigraphy.rda |only data/verre.rda |only inst |only man/arnold1949.Rd | 5 -- man/birds.Rd | 2 man/boves.Rd | 6 +- man/chevelon.Rd | 2 man/compiegne.Rd | 2 man/epica2008.Rd | 9 ++-- man/figures/logo.png |only man/folio-package.Rd | 16 +++---- man/intcal09.Rd | 2 man/intcal13.Rd | 2 man/intcal20.Rd | 2 man/kommos.Rd | 46 ++++++++++++---------- man/law2006.Rd | 9 ++-- man/lisiecki2005.Rd | 12 +++-- man/merzbach.Rd | 11 ++--- man/mississippi.Rd | 2 man/ngrip2004.Rd |only man/nydal1996.Rd | 3 - man/spratt2016.Rd | 12 +++-- man/stratigraphy.Rd |only man/verre.Rd |only man/zuni.Rd | 2 38 files changed, 354 insertions(+), 224 deletions(-)
Title: Fast 'Rcpp' Implementation of Gauss-Hermite Quadrature
Description: Fast, numerically-stable Gauss-Hermite quadrature rules and
utility functions for adaptive GH quadrature. See Liu, Q. and Pierce, D. A.
(1994) <doi:10.2307/2337136> for a reference on these methods.
Author: Alexander W Blocker
Maintainer: Alexander W Blocker <ablocker@gmail.com>
Diff between fastGHQuad versions 1.0 dated 2018-09-30 and 1.0.1 dated 2022-05-05
fastGHQuad-1.0.1/fastGHQuad/DESCRIPTION | 9 +++---- fastGHQuad-1.0.1/fastGHQuad/MD5 | 23 ++++++++---------- fastGHQuad-1.0.1/fastGHQuad/NAMESPACE | 2 - fastGHQuad-1.0.1/fastGHQuad/man/aghQuad.Rd | 15 ++++------- fastGHQuad-1.0.1/fastGHQuad/man/evalHermitePoly.Rd | 10 +++---- fastGHQuad-1.0.1/fastGHQuad/man/fastGHQuad-package.Rd | 16 +++++------- fastGHQuad-1.0.1/fastGHQuad/man/findPolyRoots.Rd | 10 +++---- fastGHQuad-1.0.1/fastGHQuad/man/gaussHermiteData.Rd | 10 +++---- fastGHQuad-1.0.1/fastGHQuad/man/ghQuad.Rd | 13 +++------- fastGHQuad-1.0.1/fastGHQuad/man/hermitePolyCoef.Rd | 10 +++---- fastGHQuad-1.0.1/fastGHQuad/src/lib.cpp | 4 ++- fastGHQuad-1.0.1/fastGHQuad/src/lib.h | 5 +++ fastGHQuad-1.0/fastGHQuad/README.md |only 13 files changed, 62 insertions(+), 65 deletions(-)
Title: Implementation of the Hydrological Model TOPMODEL in R
Description: Set of hydrological functions including an R
implementation of the hydrological model TOPMODEL, which is
based on the 1995 FORTRAN version by Keith Beven. From version
0.7.0, the package is put into maintenance mode.
Author: Wouter Buytaert
Maintainer: Wouter Buytaert <w.buytaert@imperial.ac.uk>
Diff between topmodel versions 0.7.3 dated 2018-02-01 and 0.7.4 dated 2022-05-05
DESCRIPTION | 10 +++++----- MD5 | 26 +++++++++++++------------- R/flowlength.R | 2 +- R/topmodel.R | 4 ++-- man/flowlength.Rd | 2 +- man/huagrahuma.Rd | 2 +- man/huagrahuma.dem.Rd | 2 +- man/infiltration.Rd | 2 +- man/outlet.Rd | 2 +- man/river.Rd | 2 +- man/sinkfill.Rd | 2 +- man/subcatch.Rd | 2 +- man/topidx.Rd | 2 +- man/topmodel.Rd | 7 ++++--- 14 files changed, 34 insertions(+), 33 deletions(-)
Title: Long Term Water Quality Trend Analysis
Description: Enable users to evaluate long-term trends using a Generalized
Additive Modeling (GAM) approach. The model development includes selecting a
GAM structure to describe nonlinear seasonally-varying changes over time,
incorporation of hydrologic variability via either a river flow or salinity,
the use of an intervention to deal with method or laboratory changes
suspected to impact data values, and representation of left- and
interval-censored data. The approach has been applied to water quality data
in the Chesapeake Bay, a major estuary on the east coast of the United
States to provide insights to a range of management- and research-focused
questions. Methodology described in Murphy (2019)
<doi:10.1016/j.envsoft.2019.03.027>.
Author: Rebecca Murphy, Elgin Perry, Jennifer Keisman, Jon Harcum, Erik W Leppo
Maintainer: Erik W Leppo <Erik.Leppo@tetratech.com>
Diff between baytrends versions 2.0.7 dated 2022-02-25 and 2.0.8 dated 2022-05-05
DESCRIPTION | 6 MD5 | 104 +++++----- NEWS | 45 ++++ NEWS.md | 45 ++++ R/analysisOrganizeData.R | 16 + R/baytrends.R | 15 - R/checkRange.R | 35 ++- R/chkParameter.R | 44 +++- R/closeOut.R | 3 R/createResiduals.R | 12 - R/data.R | 4 R/detrended.flow.R | 62 ++++-- R/detrended.salinity.R | 92 +++++---- R/expectMaxFunctions.r | 28 +- R/findFile.R | 7 R/flwAveragePred.R | 26 +- R/fmtPval.R | 2 R/gamDiff.R | 229 +++++++++++++++--------- R/gamTest.r | 2 R/gamTestSeason.r | 2 R/gdata_nobs.R | 30 +-- R/getUSGSflow.R | 14 - R/imputeCensored.R | 42 ++-- R/loadData.R | 2 R/makeSurvDF.R | 2 R/selectData.R | 8 R/smwrBase_na2miss.R | 2 R/supportFunctions.R | 2 R/unSurv.R | 46 +++- R/zzz.R | 14 + README.md | 2 build/vignette.rds |binary inst/doc/Detrending_Flow_and_Salinity_Data.html | 7 inst/doc/Processing_Censored_Data.html | 7 inst/doc/baytrends_overview.pdf |binary man/baytrends.Rd | 13 - man/closeOut.Rd | 3 man/detrended.flow.Rd | 15 - man/detrended.salinity.Rd | 66 +++--- man/dot-checkRange.Rd | 3 man/dot-findFile.Rd | 3 man/figures |only man/gamDiff.Rd | 66 ++++-- man/impute.Rd | 3 man/imputeDF.Rd | 3 man/nobs.Rd | 29 +-- man/stationMasterList.Rd | 4 man/unSurv.Rd | 104 +++++----- man/unSurvDF.Rd | 3 tests/testthat/test-gdata_nobs.R | 2 tests/testthat/test-impute.R | 2 tests/testthat/test-unSurvDF.R | 2 vignettes/baytrends_overview.pdf |binary vignettes/df1_2022_05_02_121643.csv |only 54 files changed, 809 insertions(+), 469 deletions(-)
Title: Manipulating Labelled Data
Description: Work with labelled data imported from 'SPSS'
or 'Stata' with 'haven' or 'foreign'. This package
provides useful functions to deal with "haven_labelled" and
"haven_labelled_spss" classes introduced by 'haven' package.
Author: Joseph Larmarange [aut, cre] ,
Daniel Ludecke [ctb],
Hadley Wickham [ctb],
Michal Bojanowski [ctb],
Francois Briatte [ctb]
Maintainer: Joseph Larmarange <joseph@larmarange.net>
Diff between labelled versions 2.9.0 dated 2021-10-29 and 2.9.1 dated 2022-05-05
DESCRIPTION | 6 MD5 | 26 +- NEWS.md | 6 R/lookfor.R | 43 ++- R/na_values.R | 18 + R/remove_labels.R | 5 R/val_labels.R | 24 +- R/var_label.R | 12 - build/vignette.rds |binary inst/doc/intro_labelled.html | 434 ++++++++++++++++++++++++++++++++++------ inst/doc/look_for.html | 351 ++++++++++++++++++++++++++------ inst/doc/missing_values.html | 294 ++++++++++++++++++++++++--- tests/testthat/test-tagged_na.r | 7 tests/testthat/test_lookfor.R | 7 14 files changed, 1037 insertions(+), 196 deletions(-)
Title: Claims Reserving under the Double Chain Ladder Model
Description: Statistical modelling and forecasting in claims reserving in non-life insurance under the Double Chain Ladder framework by Martinez-Miranda, Nielsen and Verrall (2012).
Author: Maria Dolores Martinez-Miranda, Jens Perch Nielsen and Richard Verrall
Maintainer: Maria Dolores Martinez-Miranda <mmiranda@ugr.es>
Diff between DCL versions 0.1.0 dated 2013-10-25 and 0.1.2 dated 2022-05-05
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- NAMESPACE | 7 +++++++ 3 files changed, 13 insertions(+), 6 deletions(-)
Title: R Interface to the 'UNU.RAN' Random Variate Generators
Description: Interface to the 'UNU.RAN' library for Universal Non-Uniform RANdom variate generators.
Thus it allows to build non-uniform random number generators from quite arbitrary
distributions. In particular, it provides an algorithm for fast numerical inversion
for distribution with given density function.
In addition, the package contains densities, distribution functions and quantiles
from a couple of distributions.
Author: Josef Leydold [aut, cre],
Wolfgang H"ormann [aut]
Maintainer: Josef Leydold <josef.leydold@wu.ac.at>
Diff between Runuran versions 0.35 dated 2021-10-22 and 0.36 dated 2022-05-05
DESCRIPTION | 8 MD5 | 680 +++++++-------- NEWS | 7 R/Runuran.R | 35 R/utils.R | 6 build/vignette.rds |binary inst/doc/Runuran.pdf |binary inst/include/unuran.h | 2 man/Runuran-package.Rd | 14 src/Makevars.in | 2 src/unuran-src/distr/cemp.c | 2 src/unuran-src/distr/cemp.h | 2 src/unuran-src/distr/condi.c | 2 src/unuran-src/distr/condi.h | 2 src/unuran-src/distr/cont.c | 2 src/unuran-src/distr/cont.h | 2 src/unuran-src/distr/corder.c | 2 src/unuran-src/distr/corder.h | 2 src/unuran-src/distr/cvec.c | 2 src/unuran-src/distr/cvec.h | 2 src/unuran-src/distr/cvemp.c | 2 src/unuran-src/distr/cvemp.h | 2 src/unuran-src/distr/cxtrans.c | 2 src/unuran-src/distr/cxtrans.h | 2 src/unuran-src/distr/deprecated_distr.h | 2 src/unuran-src/distr/discr.c | 2 src/unuran-src/distr/discr.h | 2 src/unuran-src/distr/distr.c | 2 src/unuran-src/distr/distr.h | 2 src/unuran-src/distr/distr_info.c | 2 src/unuran-src/distr/distr_source.h | 2 src/unuran-src/distr/distr_struct.h | 2 src/unuran-src/distr/matr.c | 2 src/unuran-src/distr/matr.h | 2 src/unuran-src/distributions/c_F.c | 2 src/unuran-src/distributions/c_beta.c | 2 src/unuran-src/distributions/c_beta_gen.c | 2 src/unuran-src/distributions/c_burr.c | 2 src/unuran-src/distributions/c_cauchy.c | 2 src/unuran-src/distributions/c_chi.c | 2 src/unuran-src/distributions/c_chi_gen.c | 2 src/unuran-src/distributions/c_chisquare.c | 2 src/unuran-src/distributions/c_exponential.c | 2 src/unuran-src/distributions/c_exponential_gen.c | 2 src/unuran-src/distributions/c_extremeI.c | 2 src/unuran-src/distributions/c_extremeII.c | 2 src/unuran-src/distributions/c_gamma.c | 2 src/unuran-src/distributions/c_gamma_gen.c | 2 src/unuran-src/distributions/c_ghyp.c | 2 src/unuran-src/distributions/c_gig.c | 2 src/unuran-src/distributions/c_gig2.c | 12 src/unuran-src/distributions/c_gig_gen.c | 2 src/unuran-src/distributions/c_hyperbolic.c | 2 src/unuran-src/distributions/c_ig.c | 2 src/unuran-src/distributions/c_laplace.c | 2 src/unuran-src/distributions/c_logistic.c | 2 src/unuran-src/distributions/c_lognormal.c | 2 src/unuran-src/distributions/c_lomax.c | 2 src/unuran-src/distributions/c_meixner.c | 2 src/unuran-src/distributions/c_normal.c | 2 src/unuran-src/distributions/c_normal_gen.c | 2 src/unuran-src/distributions/c_pareto.c | 2 src/unuran-src/distributions/c_powerexponential.c | 2 src/unuran-src/distributions/c_powerexponential_gen.c | 2 src/unuran-src/distributions/c_rayleigh.c | 2 src/unuran-src/distributions/c_slash.c | 2 src/unuran-src/distributions/c_slash_gen.c | 2 src/unuran-src/distributions/c_student.c | 2 src/unuran-src/distributions/c_student_gen.c | 2 src/unuran-src/distributions/c_triangular.c | 2 src/unuran-src/distributions/c_uniform.c | 2 src/unuran-src/distributions/c_vg.c | 2 src/unuran-src/distributions/c_weibull.c | 2 src/unuran-src/distributions/d_binomial.c | 2 src/unuran-src/distributions/d_binomial_gen.c | 2 src/unuran-src/distributions/d_geometric.c | 2 src/unuran-src/distributions/d_hypergeometric.c | 2 src/unuran-src/distributions/d_hypergeometric_gen.c | 2 src/unuran-src/distributions/d_logarithmic.c | 2 src/unuran-src/distributions/d_logarithmic_gen.c | 2 src/unuran-src/distributions/d_negativebinomial.c | 2 src/unuran-src/distributions/d_poisson.c | 2 src/unuran-src/distributions/d_poisson_gen.c | 2 src/unuran-src/distributions/d_zipf.c | 2 src/unuran-src/distributions/d_zipf_gen.c | 2 src/unuran-src/distributions/m_correlation.c | 2 src/unuran-src/distributions/unur_distributions.h | 2 src/unuran-src/distributions/unur_distributions_source.h | 2 src/unuran-src/distributions/unur_stddistr.h | 2 src/unuran-src/distributions/vc_copula.c | 2 src/unuran-src/distributions/vc_multicauchy.c | 2 src/unuran-src/distributions/vc_multiexponential.c | 2 src/unuran-src/distributions/vc_multinormal.c | 2 src/unuran-src/distributions/vc_multinormal_gen.c | 2 src/unuran-src/distributions/vc_multistudent.c | 2 src/unuran-src/methods/arou.c | 2 src/unuran-src/methods/arou.h | 2 src/unuran-src/methods/arou_struct.h | 2 src/unuran-src/methods/ars.c | 2 src/unuran-src/methods/ars.h | 2 src/unuran-src/methods/ars_struct.h | 2 src/unuran-src/methods/auto.c | 2 src/unuran-src/methods/auto.h | 2 src/unuran-src/methods/auto_struct.h | 2 src/unuran-src/methods/cext.c | 2 src/unuran-src/methods/cext.h | 2 src/unuran-src/methods/cext_struct.h | 2 src/unuran-src/methods/cstd.c | 2 src/unuran-src/methods/cstd.h | 2 src/unuran-src/methods/cstd_struct.h | 2 src/unuran-src/methods/dari.c | 2 src/unuran-src/methods/dari.h | 2 src/unuran-src/methods/dari_struct.h | 2 src/unuran-src/methods/dau.c | 2 src/unuran-src/methods/dau.h | 2 src/unuran-src/methods/dau_struct.h | 2 src/unuran-src/methods/deprecated_methods.h | 2 src/unuran-src/methods/deprecated_tdrgw.h | 2 src/unuran-src/methods/deprecated_vmt.h | 2 src/unuran-src/methods/deprecated_vmt_struct.h | 2 src/unuran-src/methods/dext.c | 2 src/unuran-src/methods/dext.h | 2 src/unuran-src/methods/dext_struct.h | 2 src/unuran-src/methods/dgt.c | 2 src/unuran-src/methods/dgt.h | 2 src/unuran-src/methods/dgt_struct.h | 2 src/unuran-src/methods/dsrou.c | 2 src/unuran-src/methods/dsrou.h | 2 src/unuran-src/methods/dsrou_struct.h | 2 src/unuran-src/methods/dss.c | 2 src/unuran-src/methods/dss.h | 2 src/unuran-src/methods/dss_struct.h | 2 src/unuran-src/methods/dstd.c | 2 src/unuran-src/methods/dstd.h | 2 src/unuran-src/methods/dstd_struct.h | 2 src/unuran-src/methods/empk.c | 2 src/unuran-src/methods/empk.h | 2 src/unuran-src/methods/empk_struct.h | 2 src/unuran-src/methods/empl.c | 2 src/unuran-src/methods/empl.h | 2 src/unuran-src/methods/empl_struct.h | 2 src/unuran-src/methods/gibbs.c | 2 src/unuran-src/methods/gibbs.h | 2 src/unuran-src/methods/gibbs_struct.h | 2 src/unuran-src/methods/hinv.c | 2 src/unuran-src/methods/hinv.h | 2 src/unuran-src/methods/hinv_struct.h | 2 src/unuran-src/methods/hist.c | 2 src/unuran-src/methods/hist.h | 2 src/unuran-src/methods/hist_struct.h | 2 src/unuran-src/methods/hitro.c | 2 src/unuran-src/methods/hitro.h | 2 src/unuran-src/methods/hitro_struct.h | 2 src/unuran-src/methods/hrb.c | 2 src/unuran-src/methods/hrb.h | 2 src/unuran-src/methods/hrb_struct.h | 2 src/unuran-src/methods/hrd.c | 2 src/unuran-src/methods/hrd.h | 2 src/unuran-src/methods/hrd_struct.h | 2 src/unuran-src/methods/hri.c | 2 src/unuran-src/methods/hri.h | 2 src/unuran-src/methods/hri_struct.h | 2 src/unuran-src/methods/itdr.c | 2 src/unuran-src/methods/itdr.h | 2 src/unuran-src/methods/itdr_struct.h | 2 src/unuran-src/methods/mcorr.c | 2 src/unuran-src/methods/mcorr.h | 2 src/unuran-src/methods/mcorr_struct.h | 2 src/unuran-src/methods/mixt.c | 2 src/unuran-src/methods/mixt.h | 2 src/unuran-src/methods/mixt_struct.h | 2 src/unuran-src/methods/mvstd.c | 2 src/unuran-src/methods/mvstd.h | 2 src/unuran-src/methods/mvstd_struct.h | 2 src/unuran-src/methods/mvtdr.c | 2 src/unuran-src/methods/mvtdr.h | 2 src/unuran-src/methods/mvtdr_debug.ch | 2 src/unuran-src/methods/mvtdr_info.ch | 2 src/unuran-src/methods/mvtdr_init.ch | 2 src/unuran-src/methods/mvtdr_newset.ch | 2 src/unuran-src/methods/mvtdr_sample.ch | 2 src/unuran-src/methods/mvtdr_struct.h | 2 src/unuran-src/methods/ninv.c | 2 src/unuran-src/methods/ninv.h | 2 src/unuran-src/methods/ninv_debug.ch | 2 src/unuran-src/methods/ninv_info.ch | 2 src/unuran-src/methods/ninv_init.ch | 2 src/unuran-src/methods/ninv_newset.ch | 2 src/unuran-src/methods/ninv_newton.ch | 2 src/unuran-src/methods/ninv_regula.ch | 2 src/unuran-src/methods/ninv_sample.ch | 2 src/unuran-src/methods/ninv_struct.h | 2 src/unuran-src/methods/norta.c | 2 src/unuran-src/methods/norta.h | 2 src/unuran-src/methods/norta_struct.h | 2 src/unuran-src/methods/nrou.c | 2 src/unuran-src/methods/nrou.h | 2 src/unuran-src/methods/nrou_struct.h | 2 src/unuran-src/methods/pinv.c | 2 src/unuran-src/methods/pinv.h | 2 src/unuran-src/methods/pinv_debug.ch | 2 src/unuran-src/methods/pinv_info.ch | 2 src/unuran-src/methods/pinv_init.ch | 2 src/unuran-src/methods/pinv_newset.ch | 2 src/unuran-src/methods/pinv_newton.ch | 2 src/unuran-src/methods/pinv_prep.ch | 2 src/unuran-src/methods/pinv_sample.ch | 2 src/unuran-src/methods/pinv_struct.h | 2 src/unuran-src/methods/srou.c | 2 src/unuran-src/methods/srou.h | 2 src/unuran-src/methods/srou_struct.h | 2 src/unuran-src/methods/ssr.c | 2 src/unuran-src/methods/ssr.h | 2 src/unuran-src/methods/ssr_struct.h | 2 src/unuran-src/methods/tabl.c | 2 src/unuran-src/methods/tabl.h | 2 src/unuran-src/methods/tabl_debug.ch | 2 src/unuran-src/methods/tabl_info.ch | 2 src/unuran-src/methods/tabl_init.ch | 2 src/unuran-src/methods/tabl_newset.ch | 2 src/unuran-src/methods/tabl_sample.ch | 2 src/unuran-src/methods/tabl_struct.h | 2 src/unuran-src/methods/tdr.c | 2 src/unuran-src/methods/tdr.h | 2 src/unuran-src/methods/tdr_debug.ch | 2 src/unuran-src/methods/tdr_gw_debug.ch | 2 src/unuran-src/methods/tdr_gw_init.ch | 2 src/unuran-src/methods/tdr_gw_sample.ch | 2 src/unuran-src/methods/tdr_ia_sample.ch | 2 src/unuran-src/methods/tdr_info.ch | 2 src/unuran-src/methods/tdr_init.ch | 2 src/unuran-src/methods/tdr_newset.ch | 2 src/unuran-src/methods/tdr_ps_debug.ch | 2 src/unuran-src/methods/tdr_ps_init.ch | 2 src/unuran-src/methods/tdr_ps_sample.ch | 2 src/unuran-src/methods/tdr_sample.ch | 2 src/unuran-src/methods/tdr_struct.h | 2 src/unuran-src/methods/unif.c | 2 src/unuran-src/methods/unif.h | 2 src/unuran-src/methods/unif_struct.h | 2 src/unuran-src/methods/unur_methods.h | 2 src/unuran-src/methods/unur_methods_source.h | 2 src/unuran-src/methods/utdr.c | 2 src/unuran-src/methods/utdr.h | 2 src/unuran-src/methods/utdr_struct.h | 2 src/unuran-src/methods/vempk.c | 2 src/unuran-src/methods/vempk.h | 2 src/unuran-src/methods/vempk_struct.h | 2 src/unuran-src/methods/vnrou.c | 2 src/unuran-src/methods/vnrou.h | 2 src/unuran-src/methods/vnrou_struct.h | 2 src/unuran-src/methods/x_gen.c | 2 src/unuran-src/methods/x_gen.h | 2 src/unuran-src/methods/x_gen_source.h | 2 src/unuran-src/methods/x_gen_struct.h | 2 src/unuran-src/parser/functparser.c | 2 src/unuran-src/parser/functparser_debug.ch | 2 src/unuran-src/parser/functparser_deriv.ch | 2 src/unuran-src/parser/functparser_eval.ch | 2 src/unuran-src/parser/functparser_init.ch | 2 src/unuran-src/parser/functparser_parser.ch | 2 src/unuran-src/parser/functparser_scanner.ch | 2 src/unuran-src/parser/functparser_source.h | 2 src/unuran-src/parser/functparser_stringgen.ch | 2 src/unuran-src/parser/functparser_struct.h | 2 src/unuran-src/parser/functparser_symbols.h | 2 src/unuran-src/parser/parser.c | 2 src/unuran-src/parser/parser.h | 2 src/unuran-src/parser/parser_source.h | 2 src/unuran-src/parser/stringparser.c | 2 src/unuran-src/parser/stringparser_lists.ch | 2 src/unuran-src/specfunct/bessel_asympt.c | 2 src/unuran-src/specfunct/cgamma.c | 2 src/unuran-src/specfunct/hypot.c | 2 src/unuran-src/specfunct/log1p.c | 2 src/unuran-src/specfunct/unur_specfunct_source.h | 2 src/unuran-src/tests/countpdf.c | 2 src/unuran-src/tests/counturn.c | 2 src/unuran-src/tests/inverror.c | 2 src/unuran-src/tests/unuran_tests.h | 2 src/unuran-src/uniform/mrg31k3p.c | 2 src/unuran-src/uniform/urng_builtin.h | 2 src/unuran-src/uniform/urng_fvoid.h | 2 src/unuran-src/uniform/urng_gsl.h | 2 src/unuran-src/uniform/urng_gslqrng.h | 2 src/unuran-src/uniform/urng_prng.h | 2 src/unuran-src/uniform/urng_randomshift.h | 2 src/unuran-src/uniform/urng_rngstreams.h | 2 src/unuran-src/unur_cookies.h | 2 src/unuran-src/unur_source.h | 2 src/unuran-src/unur_struct.h | 2 src/unuran-src/unur_typedefs.h | 2 src/unuran-src/unuran.h | 2 src/unuran-src/urng/urng.c | 2 src/unuran-src/urng/urng.h | 2 src/unuran-src/urng/urng_default.c | 2 src/unuran-src/urng/urng_set.c | 2 src/unuran-src/urng/urng_source.h | 2 src/unuran-src/urng/urng_struct.h | 2 src/unuran-src/urng/urng_unuran.c | 2 src/unuran-src/utils/debug.c | 2 src/unuran-src/utils/debug.h | 2 src/unuran-src/utils/debug_source.h | 2 src/unuran-src/utils/eigensystem.c | 2 src/unuran-src/utils/error.c | 2 src/unuran-src/utils/error.h | 2 src/unuran-src/utils/error_source.h | 2 src/unuran-src/utils/fmax.c | 2 src/unuran-src/utils/fmax_source.h | 2 src/unuran-src/utils/hooke.c | 2 src/unuran-src/utils/hooke_source.h | 2 src/unuran-src/utils/lobatto.c | 2 src/unuran-src/utils/lobatto_source.h | 2 src/unuran-src/utils/lobatto_struct.h | 2 src/unuran-src/utils/matrix.c | 2 src/unuran-src/utils/matrix_source.h | 2 src/unuran-src/utils/mrou_rectangle.c | 2 src/unuran-src/utils/mrou_rectangle_source.h | 2 src/unuran-src/utils/mrou_rectangle_struct.h | 2 src/unuran-src/utils/slist.c | 2 src/unuran-src/utils/slist.h | 2 src/unuran-src/utils/slist_struct.h | 2 src/unuran-src/utils/stream.c | 2 src/unuran-src/utils/stream.h | 2 src/unuran-src/utils/stream_source.h | 2 src/unuran-src/utils/string.c | 2 src/unuran-src/utils/string_source.h | 2 src/unuran-src/utils/string_struct.h | 2 src/unuran-src/utils/umalloc.c | 2 src/unuran-src/utils/umalloc_source.h | 2 src/unuran-src/utils/umath.c | 2 src/unuran-src/utils/umath.h | 2 src/unuran-src/utils/umath_source.h | 2 src/unuran-src/utils/unur_errno.h | 2 src/unuran-src/utils/unur_fp.c | 2 src/unuran-src/utils/unur_fp_const_source.h | 2 src/unuran-src/utils/unur_fp_source.h | 2 src/unuran-src/utils/unur_math_source.h | 2 src/unuran-src/utils/vector.c | 2 src/unuran-src/utils/vector_source.h | 2 vignettes/inputs/version.tex | 2 341 files changed, 719 insertions(+), 707 deletions(-)
Title: GWR and MGWR with Spatial Autocorrelation
Description: Functions for computing (Mixed) Geographycally Weighted Regression with spatial autocorrelation, Geniaux and Martinetti (2017) <doi:10.1016/j.regsciurbeco.2017.04.001>.
Author: Ghislain Geniaux and Davide Martinetti
Maintainer: Ghislain Geniaux <ghislain.geniaux@inra.fr>
Diff between mgwrsar versions 0.1-1 dated 2021-05-06 and 1.0 dated 2022-05-05
mgwrsar-0.1-1/mgwrsar/R/BP_pred_MGWRSARC.R |only mgwrsar-0.1-1/mgwrsar/R/CV.R |only mgwrsar-0.1-1/mgwrsar/R/D_dense_C.R |only mgwrsar-0.1-1/mgwrsar/R/Dx_dense_C.R |only mgwrsar-0.1-1/mgwrsar/R/EDK.R |only mgwrsar-0.1-1/mgwrsar/R/GD.R |only mgwrsar-0.1-1/mgwrsar/R/GDC.R |only mgwrsar-0.1-1/mgwrsar/R/GDT.R |only mgwrsar-0.1-1/mgwrsar/R/GDTC.R |only mgwrsar-0.1-1/mgwrsar/R/GDTX.R |only mgwrsar-0.1-1/mgwrsar/R/GDTXC.R |only mgwrsar-0.1-1/mgwrsar/R/GDTXX.R |only mgwrsar-0.1-1/mgwrsar/R/GDTXXC.R |only mgwrsar-0.1-1/mgwrsar/R/GDX.R |only mgwrsar-0.1-1/mgwrsar/R/GDXC.R |only mgwrsar-0.1-1/mgwrsar/R/GDXC3.R |only mgwrsar-0.1-1/mgwrsar/R/GDXC4.R |only mgwrsar-0.1-1/mgwrsar/R/GDXC5.R |only mgwrsar-0.1-1/mgwrsar/R/GDXX.R |only mgwrsar-0.1-1/mgwrsar/R/GDXXC.R |only mgwrsar-0.1-1/mgwrsar/R/GPKj.R |only mgwrsar-0.1-1/mgwrsar/R/GX.R |only mgwrsar-0.1-1/mgwrsar/R/KNN.R |only mgwrsar-0.1-1/mgwrsar/R/KNNX.R |only mgwrsar-0.1-1/mgwrsar/R/MGWR_test_bootstrap.R |only mgwrsar-0.1-1/mgwrsar/R/QRcpp_C.R |only mgwrsar-0.1-1/mgwrsar/R/SARHS.R |only mgwrsar-0.1-1/mgwrsar/R/SSR_h.R |only mgwrsar-0.1-1/mgwrsar/R/SSR_h_bw.R |only mgwrsar-0.1-1/mgwrsar/R/bandwidth_search.R |only mgwrsar-0.1-1/mgwrsar/R/bandwidth_searchW.R |only mgwrsar-0.1-1/mgwrsar/R/bin_C.R |only mgwrsar-0.1-1/mgwrsar/R/bisq_C.R |only mgwrsar-0.1-1/mgwrsar/R/bisq_knn_C.R |only mgwrsar-0.1-1/mgwrsar/R/fastlmLLT_C.R |only mgwrsar-0.1-1/mgwrsar/R/gauss_C.R |only mgwrsar-0.1-1/mgwrsar/R/gauss_adapt.R |only mgwrsar-0.1-1/mgwrsar/R/gauss_adapt_C.R |only mgwrsar-0.1-1/mgwrsar/R/gauss_knn_C.R |only mgwrsar-0.1-1/mgwrsar/R/incr_search_band.R |only mgwrsar-0.1-1/mgwrsar/R/kernelW_C.R |only mgwrsar-0.1-1/mgwrsar/R/kernel_C.R |only mgwrsar-0.1-1/mgwrsar/R/set0_conditionXD.R |only mgwrsar-0.1-1/mgwrsar/R/support_search.R |only mgwrsar-0.1-1/mgwrsar/R/tabF.R |only mgwrsar-0.1-1/mgwrsar/build/partial.rdb |only mgwrsar-0.1-1/mgwrsar/man/ApproxiW.Rd |only mgwrsar-0.1-1/mgwrsar/man/BP_pred_MGWRSAR.Rd |only mgwrsar-0.1-1/mgwrsar/man/BP_pred_MGWRSARC.Rd |only mgwrsar-0.1-1/mgwrsar/man/BP_pred_SAR.Rd |only mgwrsar-0.1-1/mgwrsar/man/Beta_extropolation.Rd |only mgwrsar-0.1-1/mgwrsar/man/CV.Rd |only mgwrsar-0.1-1/mgwrsar/man/D_dense_C.Rd |only mgwrsar-0.1-1/mgwrsar/man/Dx_dense_C.Rd |only mgwrsar-0.1-1/mgwrsar/man/EDK.Rd |only mgwrsar-0.1-1/mgwrsar/man/GD.Rd |only mgwrsar-0.1-1/mgwrsar/man/GDC.Rd |only mgwrsar-0.1-1/mgwrsar/man/GDT.Rd |only mgwrsar-0.1-1/mgwrsar/man/GDTC.Rd |only mgwrsar-0.1-1/mgwrsar/man/GDTX.Rd |only mgwrsar-0.1-1/mgwrsar/man/GDTXC.Rd |only mgwrsar-0.1-1/mgwrsar/man/GDTXX.Rd |only mgwrsar-0.1-1/mgwrsar/man/GDTXXC.Rd |only mgwrsar-0.1-1/mgwrsar/man/GDX.Rd |only mgwrsar-0.1-1/mgwrsar/man/GDXC.Rd |only mgwrsar-0.1-1/mgwrsar/man/GDXC3.Rd |only mgwrsar-0.1-1/mgwrsar/man/GDXC4.Rd |only mgwrsar-0.1-1/mgwrsar/man/GDXC5.Rd |only mgwrsar-0.1-1/mgwrsar/man/GDXX.Rd |only mgwrsar-0.1-1/mgwrsar/man/GDXXC.Rd |only mgwrsar-0.1-1/mgwrsar/man/GPKj.Rd |only mgwrsar-0.1-1/mgwrsar/man/GWR.Rd |only mgwrsar-0.1-1/mgwrsar/man/GX.Rd |only mgwrsar-0.1-1/mgwrsar/man/KNN.Rd |only mgwrsar-0.1-1/mgwrsar/man/KNNX.Rd |only mgwrsar-0.1-1/mgwrsar/man/MGWR.Rd |only mgwrsar-0.1-1/mgwrsar/man/QRcpp_C.Rd |only mgwrsar-0.1-1/mgwrsar/man/SARHS.Rd |only mgwrsar-0.1-1/mgwrsar/man/SSR.Rd |only mgwrsar-0.1-1/mgwrsar/man/SSR_h.Rd |only mgwrsar-0.1-1/mgwrsar/man/SSR_h_bw.Rd |only mgwrsar-0.1-1/mgwrsar/man/Sidak_cor_MGWR.Rd |only mgwrsar-0.1-1/mgwrsar/man/Tf.Rd |only mgwrsar-0.1-1/mgwrsar/man/aic_model.Rd |only mgwrsar-0.1-1/mgwrsar/man/assign_control.Rd |only mgwrsar-0.1-1/mgwrsar/man/bandwidth_search.Rd |only mgwrsar-0.1-1/mgwrsar/man/bandwidth_searchW.Rd |only mgwrsar-0.1-1/mgwrsar/man/bias_gwrsar.Rd |only mgwrsar-0.1-1/mgwrsar/man/bin_C.Rd |only mgwrsar-0.1-1/mgwrsar/man/bisq.Rd |only mgwrsar-0.1-1/mgwrsar/man/bisq_C.Rd |only mgwrsar-0.1-1/mgwrsar/man/bisq_knn_C.Rd |only mgwrsar-0.1-1/mgwrsar/man/fastlmLLT_C.Rd |only mgwrsar-0.1-1/mgwrsar/man/fb.Rd |only mgwrsar-0.1-1/mgwrsar/man/fill_DGPTAB.Rd 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mgwrsar-1.0/mgwrsar/R/BP_pred_MGWRSAR.R | 2 mgwrsar-1.0/mgwrsar/R/BP_pred_SAR.R | 67 mgwrsar-1.0/mgwrsar/R/GWR.R | 164 mgwrsar-1.0/mgwrsar/R/MGWR.R | 211 mgwrsar-1.0/mgwrsar/R/MGWRSAR.R | 285 mgwrsar-1.0/mgwrsar/R/PhWY_R.R |only mgwrsar-1.0/mgwrsar/R/SSR.R | 6 mgwrsar-1.0/mgwrsar/R/Sidak_cor_MGWR.R | 2 mgwrsar-1.0/mgwrsar/R/Tf.R | 2 mgwrsar-1.0/mgwrsar/R/aic_model.R | 4 mgwrsar-1.0/mgwrsar/R/assign_control.R | 25 mgwrsar-1.0/mgwrsar/R/bandwidths_MGWRSAR.R | 219 mgwrsar-1.0/mgwrsar/R/bias_gwrsar.R | 2 mgwrsar-1.0/mgwrsar/R/bisq.R | 28 mgwrsar-1.0/mgwrsar/R/bisq_adapt_sorted.R |only mgwrsar-1.0/mgwrsar/R/cell.R |only mgwrsar-1.0/mgwrsar/R/comb.R |only mgwrsar-1.0/mgwrsar/R/cv_h.R |only mgwrsar-1.0/mgwrsar/R/data.R | 8 mgwrsar-1.0/mgwrsar/R/epane.R |only mgwrsar-1.0/mgwrsar/R/epane_adapt_sorted.R |only mgwrsar-1.0/mgwrsar/R/equidistantGrid.R |only mgwrsar-1.0/mgwrsar/R/fb.R | 107 mgwrsar-1.0/mgwrsar/R/fill_DGPTAB.R | 13 mgwrsar-1.0/mgwrsar/R/find_TP.R |only mgwrsar-1.0/mgwrsar/R/gauss.R |only mgwrsar-1.0/mgwrsar/R/gauss_adapt_sorted.R |only mgwrsar-1.0/mgwrsar/R/golden_search_bandwidth.R |only mgwrsar-1.0/mgwrsar/R/gwr_beta.R |only mgwrsar-1.0/mgwrsar/R/indice_aggreg.R | 2 mgwrsar-1.0/mgwrsar/R/init_DGPTAB.R | 2 mgwrsar-1.0/mgwrsar/R/insidecell.R |only mgwrsar-1.0/mgwrsar/R/kernel_matW.R |only mgwrsar-1.0/mgwrsar/R/me_gwrsar.R | 2 mgwrsar-1.0/mgwrsar/R/mgwr_stage1.R |only mgwrsar-1.0/mgwrsar/R/mgwrsar_bootstrap_test.R |only mgwrsar-1.0/mgwrsar/R/mgwrsar_bootstrap_test_all.R |only mgwrsar-1.0/mgwrsar/R/mod.R | 2 mgwrsar-1.0/mgwrsar/R/model_conf.R | 20 mgwrsar-1.0/mgwrsar/R/normW.R | 7 mgwrsar-1.0/mgwrsar/R/plot.mgwrsar.R | 72 mgwrsar-1.0/mgwrsar/R/plot_effect.R |only mgwrsar-1.0/mgwrsar/R/predict.mgwrsar.R | 270 mgwrsar-1.0/mgwrsar/R/prep_d.R |only mgwrsar-1.0/mgwrsar/R/prep_var.R |only mgwrsar-1.0/mgwrsar/R/prep_w.R |only mgwrsar-1.0/mgwrsar/R/quadTP.R |only mgwrsar-1.0/mgwrsar/R/quadtree.R |only mgwrsar-1.0/mgwrsar/R/rectangle.R |only mgwrsar-1.0/mgwrsar/R/rectangle_adapt_sorted.R |only mgwrsar-1.0/mgwrsar/R/row_prod.R |only mgwrsar-1.0/mgwrsar/R/sample_spat.R | 2 mgwrsar-1.0/mgwrsar/R/shepard_smooth_16tg.R | 2 mgwrsar-1.0/mgwrsar/R/sheppard.R |only mgwrsar-1.0/mgwrsar/R/summary_Matrix.R | 1 mgwrsar-1.0/mgwrsar/R/summary_mgwrsar.R | 47 mgwrsar-1.0/mgwrsar/R/tcub.R |only mgwrsar-1.0/mgwrsar/R/tcub_adapt_sorted.R |only mgwrsar-1.0/mgwrsar/R/tp.R |only mgwrsar-1.0/mgwrsar/R/triangle.R |only mgwrsar-1.0/mgwrsar/R/triangle_adapt_sorted.R |only mgwrsar-1.0/mgwrsar/R/zzz.R | 16 mgwrsar-1.0/mgwrsar/build/vignette.rds |binary mgwrsar-1.0/mgwrsar/data/mydata.RData |binary mgwrsar-1.0/mgwrsar/inst/CITATION | 1 mgwrsar-1.0/mgwrsar/inst/doc/Speeding_up_GWR_like_models_with_mgwrsar_package.R |only mgwrsar-1.0/mgwrsar/inst/doc/Speeding_up_GWR_like_models_with_mgwrsar_package.Rmd |only mgwrsar-1.0/mgwrsar/inst/doc/Speeding_up_GWR_like_models_with_mgwrsar_package.html |only mgwrsar-1.0/mgwrsar/inst/doc/mgwrsar-basic_examples.R | 397 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Title: Tools for Clustering High-Dimensional Data
Description: Tools for clustering high-dimensional data.
In particular, it contains the methods described in
<doi:10.1093/bioinformatics/btaa243>,
<arXiv:2010.00950>.
Author: Jakob Raymaekers [aut, cre],
Ruben Zamar [aut]
Maintainer: Jakob Raymaekers <j.raymaekers@maastrichtuniversity.nl>
Diff between clusterHD versions 1.0.0 dated 2022-04-14 and 1.0.1 dated 2022-05-05
clusterHD-1.0.0/clusterHD/src/rcpparma_hello_world.cpp |only clusterHD-1.0.1/clusterHD/DESCRIPTION | 8 clusterHD-1.0.1/clusterHD/MD5 | 14 clusterHD-1.0.1/clusterHD/R/HTKmeans_code.R | 305 +++++++---------- clusterHD-1.0.1/clusterHD/R/RcppExports.R | 16 clusterHD-1.0.1/clusterHD/build/partial.rdb |binary clusterHD-1.0.1/clusterHD/man/HTKmeans.Rd | 13 clusterHD-1.0.1/clusterHD/src/HTKmeans.cpp |only clusterHD-1.0.1/clusterHD/src/RcppExports.cpp | 57 +-- 9 files changed, 193 insertions(+), 220 deletions(-)
Title: Benchmark and Frontier Analysis Using DEA and SFA
Description: Methods for frontier
analysis, Data Envelopment Analysis (DEA), under different
technology assumptions (fdh, vrs, drs, crs, irs, add/frh, and fdh+),
and using different efficiency measures (input based, output based,
hyperbolic graph, additive, super, and directional efficiency). Peers
and slacks are available, partial price information can be included,
and optimal cost, revenue and profit can be calculated. Evaluation of
mergers is also supported. Methods for graphing the technology sets
are also included. There is also support for comparative methods based
on Stochastic Frontier Analyses (SFA) and for convex nonparametric
least squares of convex functions (STONED). In general, the methods
can be used to solve not only standard models, but also many other
model variants. It complements the book, Bogetoft and Otto,
Benchmarking with DEA, SFA, and R, Springer-Verlag, 2011, but can of
course also be used as a stand-alone package.
Author: Peter Bogetoft and Lars Otto
Maintainer: Lars Otto <larsot23@gmail.com>
Diff between Benchmarking versions 0.29 dated 2020-08-07 and 0.30 dated 2022-05-05
DESCRIPTION | 36 ++++++++--------- MD5 | 91 ++++++++++++++++++++++---------------------- NEWS | 56 +++++++++++++-------------- R/Benchmarking.R |only R/cost.R | 9 +++- R/dea.R | 14 +++--- R/dea.dual.R | 4 - R/dea.plot.R | 4 - R/dea.web.R | 18 ++++---- R/deaUtil.R | 15 +++---- R/eff.dens.R | 6 +- R/graphEff.R | 83 ++++++++++++++++++++++------------------ R/make.merge.R | 20 ++++----- R/malmq.R | 10 +++- R/profit.R | 7 ++- R/rev.R | 4 - R/slack.R | 82 ++++++++++++++++++++++++++++++++------- man/Benchmarking-package.Rd | 6 +- man/charnes1981.Rd | 4 - man/cost.opt.Rd | 20 ++++----- man/dea.Rd | 22 +++++----- man/dea.boot.Rd | 12 ++--- man/dea.direct.Rd | 8 +-- man/dea.dual.Rd | 6 +- man/dea.merge.Rd | 10 ++-- man/dea.plot.Rd | 6 +- man/eff.Rd | 4 - man/eff.dens.Rd | 8 +-- man/eladder.Rd | 14 ++++-- man/excess.Rd | 12 ++--- man/lambda.Rd | 4 - man/make.merge.Rd | 6 +- man/malmq.Rd | 20 ++++----- man/malmquist.Rd | 20 ++++----- man/mea.Rd | 18 ++++---- man/milkProd.Rd | 4 - man/norWood2004.Rd | 6 +- man/outlier.Rd | 4 - man/peers.Rd | 18 ++++---- man/pigdata.Rd | 6 +- man/projekt.Rd | 4 - man/sdea.Rd | 18 ++++---- man/sfa.Rd | 6 +- man/slack.Rd | 4 - man/stoned.Rd | 12 ++--- src/chol_down.cpp | 3 - src/outlier.cpp | 4 + 47 files changed, 418 insertions(+), 330 deletions(-)
Title: Stochastic Frontier Analysis using R
Description: Maximum likelihood estimation for stochastic frontier analysis (SFA) of production
(profit) and cost functions.
The package includes several distributions for the one-sided error term (i.e. Rayleigh,
Gamma, Weibull, lognormal, uniform, generalized exponential and truncated skewed Laplace)
as well as the latent class stochastic frontier model (LCM) as described in Dakpo et al. (2021)
<doi:10.1111/1477-9552.12422>.
Several possibilities in terms of optimization algorithms are proposed.
Author: K Herve Dakpo [aut],
Yann Desjeux [aut, cre],
Laure Latruffe [aut]
Maintainer: Yann Desjeux <yann.desjeux@inrae.fr>
Diff between sfaR versions 0.1.0 dated 2021-05-04 and 0.1.1 dated 2022-05-05
DESCRIPTION | 8 ++++---- MD5 | 11 ++++++----- NEWS.md |only R/coef.R | 45 +++++++++++++++++++++++++++++++++++++++------ R/fitted.R | 2 +- R/zzz.R | 2 +- man/efficiencies.Rd | 14 ++++++++++---- 7 files changed, 61 insertions(+), 21 deletions(-)
Title: Renewal Hawkes Process
Description: The renewal Hawkes (RHawkes) process (Wheatley,
Filimonov, and Sornette, 2016 <doi:10.1016/j.csda.2015.08.007>) is
an extension to the classical Hawkes self-exciting point process
widely used in the modelling of clustered event sequence data.
This package provides functions to simulate the RHawkes process
with a given immigrant hazard rate function and offspring birth
time density function, to compute the exact likelihood of a
RHawkes process using the recursive algorithm proposed by Chen and
Stindl (2018) <doi:10.1080/10618600.2017.1341324>, to compute the
Rosenblatt residuals for goodness-of-fit assessment, and to
predict future event times based on observed event times up to a
given time. A function implementing the linear time RHawkes
process likelihood approximation algorithm proposed in Stindl and
Chen (2021) <doi:10.1007/s11222-021-10002-0> is also included.
Author: Feng Chen [aut, cre] ,
Tom Stindl [ctb]
Maintainer: Feng Chen <feng.chen@unsw.edu.au>
Diff between RHawkes versions 0.0 dated 2017-11-17 and 1.0 dated 2022-05-05
DESCRIPTION | 48 ++++++++++++++++++++++++++++------------ MD5 | 44 +++++++++++++++++++++---------------- NAMESPACE | 8 ++++-- R/damllRH.R |only R/sim.pred.R | 4 +-- R/sim.pred1.R |only R/simRHawkes.R | 2 - R/simRHawkes1.R |only build/partial.rdb |binary data/quake.RData |binary data/tms.RData |binary inst/CITATION | 33 ++++++++++++++++++++------- man/EM1partial.Rd | 14 +++++------ man/EM2partial.Rd | 14 +++++------ man/RHawkes-package.Rd | 2 - man/damllRH.Rd |only man/mllRH.Rd | 58 +++++-------------------------------------------- man/mllRH1.Rd | 18 +++++++-------- man/mllRH2.Rd | 13 ++++++---- man/pred.den.Rd | 4 +-- man/pred.haz.Rd | 2 - man/quake.Rd | 27 +++++++++------------- man/sim.pred.Rd | 6 ++--- man/sim.pred1.Rd |only man/simRHawkes.Rd | 6 ++--- man/simRHawkes1.Rd |only 26 files changed, 149 insertions(+), 154 deletions(-)
Title: Pathmox Approach Segmentation Tree Analysis
Description: It provides an interesting solution for handling a high number
of segmentation variables in partial least squares structural equation
modeling. The package implements the "Pathmox" algorithm (Lamberti, Sanchez,
and Aluja,(2016)<doi:10.1002/asmb.2168>) including the F-coefficient
test (Lamberti, Sanchez, and Aluja,(2017)<doi:10.1002/asmb.2270>)
to detect the path coefficients responsible for the identified differences).
The package also allows running the hybrid multi-group approach (Lamberti (2021)
<doi:10.1007/s11135-021-01096-9>).
Author: Giuseppe Lamberti [aut, cre]
Maintainer: Giuseppe Lamberti <giuseppelamb@hotmail.com>
Diff between genpathmox versions 0.7 dated 2021-08-12 and 0.8 dated 2022-05-05
genpathmox-0.7/genpathmox/R/10_fun_partopt.pls.R |only genpathmox-0.7/genpathmox/R/11_fun_F.data.pls.R |only genpathmox-0.7/genpathmox/R/12_fun_Fg.test.pls.R |only genpathmox-0.7/genpathmox/R/13_fun_Fc.test.pls.R |only genpathmox-0.7/genpathmox/R/15_fun_test.partition.pls.R |only genpathmox-0.7/genpathmox/R/16_fun_percent.node.R |only genpathmox-0.7/genpathmox/R/17_fun_showDeepth.R |only genpathmox-0.7/genpathmox/R/18_fun_root.tree.R |only genpathmox-0.7/genpathmox/R/19_fun_terminal.tree.R |only genpathmox-0.7/genpathmox/R/1_fun_blockdiag.R |only genpathmox-0.7/genpathmox/R/20_fun_nodes.tree.R |only genpathmox-0.7/genpathmox/R/21_fun_candidates.tree.R |only genpathmox-0.7/genpathmox/R/22_fun_fglobal.tree.pls.R |only genpathmox-0.7/genpathmox/R/23_fun_fcoef.tree.pls.R |only genpathmox-0.7/genpathmox/R/24_fun_mox.tree.pls.R |only genpathmox-0.7/genpathmox/R/25_fun_info.mox.pls.R |only genpathmox-0.7/genpathmox/R/26_fun_pls.pathmox.R |only genpathmox-0.7/genpathmox/R/27_fun_pls.treemodel.R |only genpathmox-0.7/genpathmox/R/28_fun_pls.treenode.R |only genpathmox-0.7/genpathmox/R/2_fun_comb.R |only genpathmox-0.7/genpathmox/R/30_fun_splitopt.reg.R |only genpathmox-0.7/genpathmox/R/31_fun_all.part.reg.R |only genpathmox-0.7/genpathmox/R/32_fun_partopt.reg.R |only genpathmox-0.7/genpathmox/R/33_fun_F.data.reg.R |only genpathmox-0.7/genpathmox/R/34_fun_Fg.test.reg.R |only genpathmox-0.7/genpathmox/R/35_fun_Fc.test.reg.R |only genpathmox-0.7/genpathmox/R/36_fun_test.particion.reg.R |only genpathmox-0.7/genpathmox/R/37_fun_printTree.R |only genpathmox-0.7/genpathmox/R/38_fun_fglobal.tree.R |only genpathmox-0.7/genpathmox/R/39_fun_fcoef.tree.reg.R |only genpathmox-0.7/genpathmox/R/3_fun_partition.R |only genpathmox-0.7/genpathmox/R/40_fun_mox.tree.R |only genpathmox-0.7/genpathmox/R/41_fun_info.mox.reg.R |only genpathmox-0.7/genpathmox/R/42_fun_reg.pathmox.R |only genpathmox-0.7/genpathmox/R/4_fun_build.block.R |only genpathmox-0.7/genpathmox/R/5_fun_bin.levels.R |only genpathmox-0.7/genpathmox/R/6_fun_element.R |only genpathmox-0.7/genpathmox/R/7_fun_f.min.R |only genpathmox-0.7/genpathmox/R/8_fun_splitopt.pls.R |only genpathmox-0.7/genpathmox/R/9_fun_all.part.pls.R |only genpathmox-0.7/genpathmox/R/class1_info.pls.R |only genpathmox-0.7/genpathmox/R/class2_node.R |only genpathmox-0.7/genpathmox/R/class3_tree.R |only genpathmox-0.7/genpathmox/R/class4_info.reg.R |only genpathmox-0.7/genpathmox/R/class5_node.reg.R |only genpathmox-0.7/genpathmox/R/fibtele_bank-data.R |only genpathmox-0.7/genpathmox/R/get_tester.R |only genpathmox-0.7/genpathmox/R/get_turner.R |only genpathmox-0.7/genpathmox/R/method1_xtree.pls.R |only genpathmox-0.7/genpathmox/R/method2_treemodel.R |only genpathmox-0.7/genpathmox/R/method3_xtree.reg.R |only genpathmox-0.7/genpathmox/R/method4_treemodelreg.R |only genpathmox-0.7/genpathmox/R/plot_plot.xtree.pls.R |only genpathmox-0.7/genpathmox/R/summarize.mox.R |only genpathmox-0.7/genpathmox/R/summarize.reg.R |only genpathmox-0.7/genpathmox/data/fibtelereg.rda |only genpathmox-0.7/genpathmox/man/F.data.pls.Rd |only genpathmox-0.7/genpathmox/man/F.data.reg.Rd |only genpathmox-0.7/genpathmox/man/Fc.test.pls.Rd |only genpathmox-0.7/genpathmox/man/Fc.test.reg.Rd |only genpathmox-0.7/genpathmox/man/Fg.test.pls.Rd |only genpathmox-0.7/genpathmox/man/Fg.test.reg.Rd |only genpathmox-0.7/genpathmox/man/all.part.pls.Rd |only genpathmox-0.7/genpathmox/man/all.part.reg.Rd |only genpathmox-0.7/genpathmox/man/check_args.Rd |only genpathmox-0.7/genpathmox/man/check_blocks.Rd |only genpathmox-0.7/genpathmox/man/check_boot.Rd |only genpathmox-0.7/genpathmox/man/check_data.Rd |only genpathmox-0.7/genpathmox/man/check_maxiter.Rd |only genpathmox-0.7/genpathmox/man/check_model.Rd |only genpathmox-0.7/genpathmox/man/check_modes.Rd |only genpathmox-0.7/genpathmox/man/check_path.Rd |only genpathmox-0.7/genpathmox/man/check_plscomp.Rd |only genpathmox-0.7/genpathmox/man/check_scaling.Rd |only genpathmox-0.7/genpathmox/man/check_scheme.Rd |only genpathmox-0.7/genpathmox/man/check_specs.Rd |only genpathmox-0.7/genpathmox/man/check_tol.Rd |only genpathmox-0.7/genpathmox/man/df_to_blocks.Rd |only genpathmox-0.7/genpathmox/man/dummy.G.Rd |only genpathmox-0.7/genpathmox/man/dummy_to_list.Rd |only genpathmox-0.7/genpathmox/man/factor_to_dummy.Rd |only genpathmox-0.7/genpathmox/man/fcoef.tree.pls.Rd |only genpathmox-0.7/genpathmox/man/fcoef.tree.reg.Rd |only genpathmox-0.7/genpathmox/man/fglobal.tree.pls.Rd |only genpathmox-0.7/genpathmox/man/fibtelereg.Rd |only genpathmox-0.7/genpathmox/man/from_to.Rd |only genpathmox-0.7/genpathmox/man/funlist.Rd |only genpathmox-0.7/genpathmox/man/get_PLSR.Rd |only genpathmox-0.7/genpathmox/man/get_PLSR_NA.Rd |only genpathmox-0.7/genpathmox/man/get_boot_stats.Rd |only genpathmox-0.7/genpathmox/man/get_boots.Rd |only genpathmox-0.7/genpathmox/man/get_dummies.Rd |only genpathmox-0.7/genpathmox/man/get_dummy.Rd |only genpathmox-0.7/genpathmox/man/get_effects.Rd |only genpathmox-0.7/genpathmox/man/get_generals.Rd |only genpathmox-0.7/genpathmox/man/get_gof.Rd |only genpathmox-0.7/genpathmox/man/get_inner_summary.Rd |only genpathmox-0.7/genpathmox/man/get_manifests.Rd |only genpathmox-0.7/genpathmox/man/get_metric.Rd |only genpathmox-0.7/genpathmox/man/get_nom_scale.Rd |only genpathmox-0.7/genpathmox/man/get_num_scale.Rd |only genpathmox-0.7/genpathmox/man/get_numerics.Rd |only genpathmox-0.7/genpathmox/man/get_ord_scale.Rd |only genpathmox-0.7/genpathmox/man/get_paths.Rd |only genpathmox-0.7/genpathmox/man/get_rank.Rd |only genpathmox-0.7/genpathmox/man/get_scores.Rd |only genpathmox-0.7/genpathmox/man/get_treated_data.Rd |only genpathmox-0.7/genpathmox/man/get_unidim.Rd |only genpathmox-0.7/genpathmox/man/get_weights.Rd |only genpathmox-0.7/genpathmox/man/get_weights_nonmetric.Rd |only genpathmox-0.7/genpathmox/man/has_dimension.Rd |only genpathmox-0.7/genpathmox/man/has_factors.Rd |only genpathmox-0.7/genpathmox/man/has_missing.Rd |only genpathmox-0.7/genpathmox/man/has_names.Rd |only genpathmox-0.7/genpathmox/man/has_rownames.Rd |only genpathmox-0.7/genpathmox/man/indexify.Rd |only genpathmox-0.7/genpathmox/man/info.mox.pls.Rd |only genpathmox-0.7/genpathmox/man/info.mox.reg.Rd |only genpathmox-0.7/genpathmox/man/info.pls-class.Rd |only genpathmox-0.7/genpathmox/man/info.reg_class.Rd |only genpathmox-0.7/genpathmox/man/is_class.Rd |only genpathmox-0.7/genpathmox/man/is_dataframe.Rd |only genpathmox-0.7/genpathmox/man/is_decimal.Rd |only genpathmox-0.7/genpathmox/man/is_diagonal.Rd |only genpathmox-0.7/genpathmox/man/is_even.Rd |only genpathmox-0.7/genpathmox/man/is_integer.Rd |only genpathmox-0.7/genpathmox/man/is_lower_triangular.Rd |only genpathmox-0.7/genpathmox/man/is_matrix.Rd |only genpathmox-0.7/genpathmox/man/is_missing.Rd |only genpathmox-0.7/genpathmox/man/is_multidim.Rd |only genpathmox-0.7/genpathmox/man/is_multiple.Rd |only genpathmox-0.7/genpathmox/man/is_natural.Rd |only genpathmox-0.7/genpathmox/man/is_negative.Rd |only genpathmox-0.7/genpathmox/man/is_negative_decimal.Rd |only genpathmox-0.7/genpathmox/man/is_negative_integer.Rd |only genpathmox-0.7/genpathmox/man/is_odd.Rd |only genpathmox-0.7/genpathmox/man/is_one_dim.Rd |only genpathmox-0.7/genpathmox/man/is_positive.Rd |only genpathmox-0.7/genpathmox/man/is_positive_decimal.Rd |only genpathmox-0.7/genpathmox/man/is_positive_integer.Rd |only genpathmox-0.7/genpathmox/man/is_rectangular_matrix.Rd |only genpathmox-0.7/genpathmox/man/is_scalar.Rd |only genpathmox-0.7/genpathmox/man/is_single.Rd |only genpathmox-0.7/genpathmox/man/is_single_decimal.Rd |only genpathmox-0.7/genpathmox/man/is_single_even.Rd |only genpathmox-0.7/genpathmox/man/is_single_false.Rd |only genpathmox-0.7/genpathmox/man/is_single_logical.Rd |only genpathmox-0.7/genpathmox/man/is_single_negative.Rd |only genpathmox-0.7/genpathmox/man/is_single_negative_decimal.Rd |only genpathmox-0.7/genpathmox/man/is_single_negative_integer.Rd |only genpathmox-0.7/genpathmox/man/is_single_number.Rd |only genpathmox-0.7/genpathmox/man/is_single_odd.Rd |only genpathmox-0.7/genpathmox/man/is_single_positive.Rd |only genpathmox-0.7/genpathmox/man/is_single_positive_decimal.Rd |only genpathmox-0.7/genpathmox/man/is_single_positive_integer.Rd |only genpathmox-0.7/genpathmox/man/is_single_string.Rd |only genpathmox-0.7/genpathmox/man/is_single_true.Rd |only genpathmox-0.7/genpathmox/man/is_square_matrix.Rd |only genpathmox-0.7/genpathmox/man/is_square_numeric_matrix.Rd |only genpathmox-0.7/genpathmox/man/is_string.Rd |only genpathmox-0.7/genpathmox/man/is_tabular.Rd |only genpathmox-0.7/genpathmox/man/is_vector.Rd |only genpathmox-0.7/genpathmox/man/lengths.Rd |only genpathmox-0.7/genpathmox/man/list_of_vectors.Rd |only genpathmox-0.7/genpathmox/man/list_ones.Rd |only genpathmox-0.7/genpathmox/man/list_to_dummy.Rd |only genpathmox-0.7/genpathmox/man/list_to_matrix.Rd |only genpathmox-0.7/genpathmox/man/list_with_vectors.Rd |only genpathmox-0.7/genpathmox/man/listify.Rd |only genpathmox-0.7/genpathmox/man/listsize.Rd |only genpathmox-0.7/genpathmox/man/matrix_to_blocks.Rd |only genpathmox-0.7/genpathmox/man/maxlist.Rd |only genpathmox-0.7/genpathmox/man/meanlist.Rd |only genpathmox-0.7/genpathmox/man/minlist.Rd |only genpathmox-0.7/genpathmox/man/mox.tree.pls.Rd |only genpathmox-0.7/genpathmox/man/node.reg_class.Rd |only genpathmox-0.7/genpathmox/man/normalize.Rd |only genpathmox-0.7/genpathmox/man/partopt.pls.Rd |only genpathmox-0.7/genpathmox/man/partopt.reg.Rd |only genpathmox-0.7/genpathmox/man/plot.xtree.pls.Rd |only genpathmox-0.7/genpathmox/man/pls.treemodel.Rd |only genpathmox-0.7/genpathmox/man/plspm.Rd |only genpathmox-0.7/genpathmox/man/prodlist.Rd |only genpathmox-0.7/genpathmox/man/reg.pathmox.Rd |only genpathmox-0.7/genpathmox/man/same_class.Rd |only genpathmox-0.7/genpathmox/man/same_dim.Rd |only genpathmox-0.7/genpathmox/man/same_length.Rd |only genpathmox-0.7/genpathmox/man/same_mode.Rd |only genpathmox-0.7/genpathmox/man/same_nrow.Rd |only genpathmox-0.7/genpathmox/man/same_type.Rd |only genpathmox-0.7/genpathmox/man/splitopt.pls.Rd |only genpathmox-0.7/genpathmox/man/splitopt.reg.Rd |only genpathmox-0.7/genpathmox/man/sumlist.Rd |only genpathmox-0.7/genpathmox/man/summarize.mox.Rd |only genpathmox-0.7/genpathmox/man/summarize.reg.Rd |only genpathmox-0.7/genpathmox/man/test.particion.reg.Rd |only genpathmox-0.7/genpathmox/man/test.partition.pls.Rd |only genpathmox-0.7/genpathmox/man/test_factors.Rd |only genpathmox-0.7/genpathmox/man/test_manifest_scaling.Rd |only genpathmox-0.7/genpathmox/man/test_null_weights.Rd |only genpathmox-0.7/genpathmox/man/tree-class.Rd |only genpathmox-0.7/genpathmox/man/treemodel.Rd |only genpathmox-0.7/genpathmox/man/treemodelreg.Rd |only genpathmox-0.7/genpathmox/man/treenode.pls.Rd |only genpathmox-0.7/genpathmox/man/vector_to_dummy.Rd |only genpathmox-0.7/genpathmox/man/xtree.pls.Rd |only genpathmox-0.7/genpathmox/man/xtree.reg.Rd |only genpathmox-0.8/genpathmox/DESCRIPTION | 17 genpathmox-0.8/genpathmox/MD5 | 288 - genpathmox-0.8/genpathmox/NAMESPACE | 169 genpathmox-0.8/genpathmox/R/data.R |only genpathmox-0.8/genpathmox/R/get_class_and_method.R |only genpathmox-0.8/genpathmox/R/get_internal_F_tests.R |only genpathmox-0.8/genpathmox/R/get_internal_tree.R |only genpathmox-0.8/genpathmox/R/get_pathmox_internal.R |only genpathmox-0.8/genpathmox/R/get_plots.R |only genpathmox-0.8/genpathmox/R/get_pls.R | 2481 ------------ genpathmox-0.8/genpathmox/R/get_print.R |only genpathmox-0.8/genpathmox/R/get_summary.R |only genpathmox-0.8/genpathmox/R/pls.pathmox.R |only genpathmox-0.8/genpathmox/data/climate.rda |only genpathmox-0.8/genpathmox/data/footdata.rda |only genpathmox-0.8/genpathmox/man/F.data.Rd |only genpathmox-0.8/genpathmox/man/Fc.test.Rd |only genpathmox-0.8/genpathmox/man/Fg.test.Rd |only genpathmox-0.8/genpathmox/man/all_part.Rd |only genpathmox-0.8/genpathmox/man/bar_impvar.Rd |only genpathmox-0.8/genpathmox/man/bar_terminal.Rd |only genpathmox-0.8/genpathmox/man/bin.levels.Rd | 18 genpathmox-0.8/genpathmox/man/blockdiag.Rd | 14 genpathmox-0.8/genpathmox/man/build.block.Rd | 20 genpathmox-0.8/genpathmox/man/candidates.tree.Rd | 16 genpathmox-0.8/genpathmox/man/check_arg_mox.Rd |only genpathmox-0.8/genpathmox/man/climate.Rd |only genpathmox-0.8/genpathmox/man/comb.Rd | 22 genpathmox-0.8/genpathmox/man/csibank.Rd | 105 genpathmox-0.8/genpathmox/man/element.Rd | 16 genpathmox-0.8/genpathmox/man/f.min.Rd | 17 genpathmox-0.8/genpathmox/man/fcoef.tree.Rd |only genpathmox-0.8/genpathmox/man/fglobal.tree.Rd | 16 genpathmox-0.8/genpathmox/man/footdata.Rd |only genpathmox-0.8/genpathmox/man/get_path_scheme.Rd | 10 genpathmox-0.8/genpathmox/man/info-class.Rd |only 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genpathmox-0.8/genpathmox/man/terminal.tree.Rd | 16 genpathmox-0.8/genpathmox/man/test.partition.Rd |only genpathmox-0.8/genpathmox/man/var_imp_mox.Rd |only 266 files changed, 665 insertions(+), 3096 deletions(-)
Title: R Interface to the 'QuantLib' Library
Description: The 'RQuantLib' package makes parts of 'QuantLib' accessible from R
The 'QuantLib' project aims to provide a comprehensive software framework
for quantitative finance. The goal is to provide a standard open source library
for quantitative analysis, modeling, trading, and risk management of financial
assets.
Author: Dirk Eddelbuettel, Khanh Nguyen , Terry Leitch
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RQuantLib versions 0.4.15 dated 2022-01-20 and 0.4.16 dated 2022-05-05
ChangeLog | 38 ++++++++++++++++++++++++++++++++++++++ DESCRIPTION | 8 ++++---- MD5 | 28 ++++++++++++++-------------- R/affine.R | 31 +++++++++++++++---------------- R/bermudan.R | 26 +++++++++++++------------- R/sabr.R | 32 ++++++++++++++++---------------- configure | 18 +++++++++--------- configure.ac | 2 +- data/tsQuotes.RData |binary data/vcube.RData |binary inst/NEWS.Rd | 9 +++++++++ man/BondUtilities.Rd | 17 ++++++++++------- man/Enum.Rd | 14 ++++++++++---- man/SabrSwaption.Rd | 32 ++++++++++++++++---------------- src/utils.cpp | 8 +++++--- 15 files changed, 160 insertions(+), 103 deletions(-)
Title: Measure Climate Scenario Alignment of Corporate Loans
Description: These tools help you to assess if a corporate lending
portfolio aligns with climate goals. They summarize key climate
indicators attributed to the portfolio (e.g. production, emission
factors), and calculate alignment targets based on climate scenarios.
They implement in R the last step of the free software 'PACTA' (Paris
Agreement Capital Transition Assessment;
<https://2degrees-investing.org/>). Financial institutions use 'PACTA'
to study how their capital allocation decisions align with climate
change mitigation goals.
Author: Jackson Hoffart [aut, cre] ,
Mauro Lepore [aut, ctr] ,
Klaus Hogedorn [aut],
2 Degrees Investing Initiative [cph, fnd]
Maintainer: Jackson Hoffart <jackson.hoffart@gmail.com>
Diff between r2dii.analysis versions 0.1.12 dated 2021-08-18 and 0.2.0 dated 2022-05-05
r2dii.analysis-0.1.12/r2dii.analysis/tests/testthat/ref-join_ald_scenario |only r2dii.analysis-0.1.12/r2dii.analysis/tests/testthat/ref-summarize_weighted_percent_change-credit_limit0 |only r2dii.analysis-0.1.12/r2dii.analysis/tests/testthat/ref-summarize_weighted_percent_change-credit_limit1 |only r2dii.analysis-0.1.12/r2dii.analysis/tests/testthat/ref-summarize_weighted_production-credit_limit0 |only r2dii.analysis-0.1.12/r2dii.analysis/tests/testthat/ref-summarize_weighted_production-credit_limit1 |only r2dii.analysis-0.1.12/r2dii.analysis/tests/testthat/ref-target_market_share |only r2dii.analysis-0.1.12/r2dii.analysis/tests/testthat/ref-target_sda |only r2dii.analysis-0.1.12/r2dii.analysis/tests/testthat/ref-target_sda_company |only r2dii.analysis-0.2.0/r2dii.analysis/DESCRIPTION | 18 r2dii.analysis-0.2.0/r2dii.analysis/MD5 | 66 - r2dii.analysis-0.2.0/r2dii.analysis/NAMESPACE | 3 r2dii.analysis-0.2.0/r2dii.analysis/NEWS.md | 19 r2dii.analysis-0.2.0/r2dii.analysis/R/imports.R | 1 r2dii.analysis-0.2.0/r2dii.analysis/R/join_abcd_scenario.R |only r2dii.analysis-0.2.0/r2dii.analysis/R/join_ald_scenario.R | 134 -- r2dii.analysis-0.2.0/r2dii.analysis/R/r2dii.analysis-package.R | 1 r2dii.analysis-0.2.0/r2dii.analysis/R/summarize_weighted_production.R | 80 - r2dii.analysis-0.2.0/r2dii.analysis/R/target_market_share.R | 559 +++++----- r2dii.analysis-0.2.0/r2dii.analysis/R/target_sda.R | 229 ++-- r2dii.analysis-0.2.0/r2dii.analysis/R/utils.R | 66 + r2dii.analysis-0.2.0/r2dii.analysis/README.md | 194 +-- r2dii.analysis-0.2.0/r2dii.analysis/man/figures |only r2dii.analysis-0.2.0/r2dii.analysis/man/join_abcd_scenario.Rd |only r2dii.analysis-0.2.0/r2dii.analysis/man/join_ald_scenario.Rd | 45 r2dii.analysis-0.2.0/r2dii.analysis/man/r2dii.analysis-package.Rd | 11 r2dii.analysis-0.2.0/r2dii.analysis/man/summarize_weighted_production.Rd | 18 r2dii.analysis-0.2.0/r2dii.analysis/man/target_market_share.Rd | 30 r2dii.analysis-0.2.0/r2dii.analysis/man/target_sda.Rd | 78 - r2dii.analysis-0.2.0/r2dii.analysis/tests/testthat/_snaps |only r2dii.analysis-0.2.0/r2dii.analysis/tests/testthat/helper-fake_data.R | 42 r2dii.analysis-0.2.0/r2dii.analysis/tests/testthat/test-join_abcd_scenario.R |only r2dii.analysis-0.2.0/r2dii.analysis/tests/testthat/test-join_ald_scenario.R | 66 - r2dii.analysis-0.2.0/r2dii.analysis/tests/testthat/test-summarize_weighted_production.R | 39 r2dii.analysis-0.2.0/r2dii.analysis/tests/testthat/test-target_market_share.R | 517 ++++++--- r2dii.analysis-0.2.0/r2dii.analysis/tests/testthat/test-target_sda.R | 356 ++++-- 35 files changed, 1571 insertions(+), 1001 deletions(-)
More information about r2dii.analysis at CRAN
Permanent link
Title: Verbs and Nouns for Corpus Analysis
Description: Package for corpus analysis using the Corpus Workbench
('CWB', <https://cwb.sourceforge.io>) as an efficient back end for indexing
and querying large corpora. The package offers functionality to flexibly create
subcorpora and to carry out basic statistical operations (count, co-occurrences
etc.). The original full text of documents can be reconstructed and inspected at
any time. Beyond that, the package is intended to serve as an interface to
packages implementing advanced statistical procedures. Respective data structures
(document-term matrices, term-co-occurrence matrices etc.) can be created based
on the indexed corpora.
Author: Andreas Blaette [aut, cre] ,
Christoph Leonhardt [ctb],
Marius Bertram [ctb]
Maintainer: Andreas Blaette <andreas.blaette@uni-due.de>
Diff between polmineR versions 0.8.5 dated 2020-09-22 and 0.8.6 dated 2022-05-05
polmineR-0.8.5/polmineR/R/make_region_matrix.R |only polmineR-0.8.5/polmineR/R/store.R |only polmineR-0.8.5/polmineR/man/restore.Rd |only polmineR-0.8.6/polmineR/DESCRIPTION | 46 polmineR-0.8.6/polmineR/MD5 | 295 - polmineR-0.8.6/polmineR/NAMESPACE | 22 polmineR-0.8.6/polmineR/NEWS.md | 217 + polmineR-0.8.6/polmineR/R/S4classes.R | 935 +++--- polmineR-0.8.6/polmineR/R/TermDocumentMatrix.R | 156 - polmineR-0.8.6/polmineR/R/as.VCorpus.R | 7 polmineR-0.8.6/polmineR/R/as.markdown.R | 154 - polmineR-0.8.6/polmineR/R/as.sparseMatrix.R | 10 polmineR-0.8.6/polmineR/R/as.speeches.R | 240 + polmineR-0.8.6/polmineR/R/bundle.R | 15 polmineR-0.8.6/polmineR/R/coerce.R | 17 polmineR-0.8.6/polmineR/R/context.R | 390 +- polmineR-0.8.6/polmineR/R/cooccurrences.R | 34 polmineR-0.8.6/polmineR/R/corpus.R | 443 ++ polmineR-0.8.6/polmineR/R/count.R | 184 - polmineR-0.8.6/polmineR/R/cpos.R | 63 polmineR-0.8.6/polmineR/R/decode.R | 167 - polmineR-0.8.6/polmineR/R/dispersion.R | 97 polmineR-0.8.6/polmineR/R/encoding.R | 103 polmineR-0.8.6/polmineR/R/enrich.R | 64 polmineR-0.8.6/polmineR/R/features.R | 14 polmineR-0.8.6/polmineR/R/format.R | 14 polmineR-0.8.6/polmineR/R/highlight.R | 44 polmineR-0.8.6/polmineR/R/hits.R | 252 - polmineR-0.8.6/polmineR/R/html.R | 33 polmineR-0.8.6/polmineR/R/info.R | 3 polmineR-0.8.6/polmineR/R/kwic.R | 165 - polmineR-0.8.6/polmineR/R/ngrams.R | 35 polmineR-0.8.6/polmineR/R/noise.R | 22 polmineR-0.8.6/polmineR/R/opencpu.R | 25 polmineR-0.8.6/polmineR/R/p_attributes.R | 50 polmineR-0.8.6/polmineR/R/partition.R | 154 - polmineR-0.8.6/polmineR/R/partition_bundle.R | 32 polmineR-0.8.6/polmineR/R/phrases.R | 66 polmineR-0.8.6/polmineR/R/ranges.R |only polmineR-0.8.6/polmineR/R/read.R | 7 polmineR-0.8.6/polmineR/R/regions.R | 106 polmineR-0.8.6/polmineR/R/registry.R | 49 polmineR-0.8.6/polmineR/R/renamed.R | 2 polmineR-0.8.6/polmineR/R/restore.R |only polmineR-0.8.6/polmineR/R/s_attributes.R | 176 - polmineR-0.8.6/polmineR/R/size.R | 94 polmineR-0.8.6/polmineR/R/split.R | 108 polmineR-0.8.6/polmineR/R/stats.R | 2 polmineR-0.8.6/polmineR/R/templates.R | 17 polmineR-0.8.6/polmineR/R/terms.R | 97 polmineR-0.8.6/polmineR/R/token_stream.R | 144 polmineR-0.8.6/polmineR/R/trim.R | 52 polmineR-0.8.6/polmineR/R/type.R | 30 polmineR-0.8.6/polmineR/R/use.R | 2 polmineR-0.8.6/polmineR/R/utils.R | 122 polmineR-0.8.6/polmineR/R/weigh.R | 2 polmineR-0.8.6/polmineR/R/zzz.R | 26 polmineR-0.8.6/polmineR/build/vignette.rds |binary polmineR-0.8.6/polmineR/inst/doc/OpenCPU.R | 3 polmineR-0.8.6/polmineR/inst/doc/OpenCPU.Rmd | 2 polmineR-0.8.6/polmineR/inst/doc/OpenCPU.html | 139 polmineR-0.8.6/polmineR/inst/doc/encodings.Rmd |only polmineR-0.8.6/polmineR/inst/doc/encodings.html |only polmineR-0.8.6/polmineR/inst/doc/vignette.R | 16 polmineR-0.8.6/polmineR/inst/doc/vignette.Rmd | 27 polmineR-0.8.6/polmineR/inst/doc/vignette.html | 1521 +++++----- polmineR-0.8.6/polmineR/inst/shiny/global.R | 3 polmineR-0.8.6/polmineR/inst/shiny/modules/cooccurrences.R | 14 polmineR-0.8.6/polmineR/inst/shiny/modules/kwic.R | 144 polmineR-0.8.6/polmineR/inst/shiny/ui.R | 3 polmineR-0.8.6/polmineR/man/all-cooccurrences-class.Rd | 52 polmineR-0.8.6/polmineR/man/all_cooccurrences.Rd | 6 polmineR-0.8.6/polmineR/man/as.DocumentTermMatrix.Rd | 27 polmineR-0.8.6/polmineR/man/as.sparseMatrix.Rd | 3 polmineR-0.8.6/polmineR/man/as.speeches.Rd | 31 polmineR-0.8.6/polmineR/man/bundle.Rd | 12 polmineR-0.8.6/polmineR/man/chisquare-method.Rd | 10 polmineR-0.8.6/polmineR/man/context-method.Rd | 102 polmineR-0.8.6/polmineR/man/context_bundle-class.Rd | 12 polmineR-0.8.6/polmineR/man/cooccurrences.Rd | 21 polmineR-0.8.6/polmineR/man/corpus-class.Rd | 96 polmineR-0.8.6/polmineR/man/corpus_methods.Rd | 22 polmineR-0.8.6/polmineR/man/count-method.Rd | 16 polmineR-0.8.6/polmineR/man/count_class.Rd | 6 polmineR-0.8.6/polmineR/man/cpos-method.Rd | 21 polmineR-0.8.6/polmineR/man/cqp.Rd | 29 polmineR-0.8.6/polmineR/man/decode.Rd | 55 polmineR-0.8.6/polmineR/man/dispersion-method.Rd | 38 polmineR-0.8.6/polmineR/man/encoding.Rd | 23 polmineR-0.8.6/polmineR/man/encodings.Rd | 24 polmineR-0.8.6/polmineR/man/features.Rd | 4 polmineR-0.8.6/polmineR/man/get_token_stream-method.Rd | 57 polmineR-0.8.6/polmineR/man/get_type.Rd | 20 polmineR-0.8.6/polmineR/man/highlight.Rd | 15 polmineR-0.8.6/polmineR/man/hits.Rd | 56 polmineR-0.8.6/polmineR/man/hits_class.Rd | 33 polmineR-0.8.6/polmineR/man/html-method.Rd | 7 polmineR-0.8.6/polmineR/man/kwic-class.Rd | 59 polmineR-0.8.6/polmineR/man/kwic.Rd | 56 polmineR-0.8.6/polmineR/man/ll.Rd | 28 polmineR-0.8.6/polmineR/man/ngrams.Rd | 16 polmineR-0.8.6/polmineR/man/noise.Rd | 10 polmineR-0.8.6/polmineR/man/ocpu_exec.Rd | 2 polmineR-0.8.6/polmineR/man/p_attributes.Rd | 11 polmineR-0.8.6/polmineR/man/partition.Rd | 10 polmineR-0.8.6/polmineR/man/partition_bundle-class.Rd | 2 polmineR-0.8.6/polmineR/man/partition_bundle-method.Rd | 2 polmineR-0.8.6/polmineR/man/partition_class.Rd | 14 polmineR-0.8.6/polmineR/man/phrases-class.Rd | 45 polmineR-0.8.6/polmineR/man/polmineR-defunct.Rd | 2 polmineR-0.8.6/polmineR/man/polmineR-generics.Rd | 4 polmineR-0.8.6/polmineR/man/polmineR-package.Rd | 72 polmineR-0.8.6/polmineR/man/ranges.Rd |only polmineR-0.8.6/polmineR/man/ranges_class.Rd |only polmineR-0.8.6/polmineR/man/regions_class.Rd | 52 polmineR-0.8.6/polmineR/man/registry.Rd | 30 polmineR-0.8.6/polmineR/man/registry_eval.Rd | 23 polmineR-0.8.6/polmineR/man/registry_reset.Rd | 2 polmineR-0.8.6/polmineR/man/s_attributes-method.Rd | 31 polmineR-0.8.6/polmineR/man/size-method.Rd | 29 polmineR-0.8.6/polmineR/man/slice.Rd | 2 polmineR-0.8.6/polmineR/man/subcorpus-class.Rd | 19 polmineR-0.8.6/polmineR/man/subcorpus_bundle.Rd | 22 polmineR-0.8.6/polmineR/man/subset.Rd | 28 polmineR-0.8.6/polmineR/man/t_test.Rd | 14 polmineR-0.8.6/polmineR/man/templates.Rd | 5 polmineR-0.8.6/polmineR/man/terms.Rd | 37 polmineR-0.8.6/polmineR/man/textstat-class.Rd | 116 polmineR-0.8.6/polmineR/man/trim-method.Rd | 2 polmineR-0.8.6/polmineR/man/use.Rd | 2 polmineR-0.8.6/polmineR/man/weigh-method.Rd | 2 polmineR-0.8.6/polmineR/tests/testthat/test_aggregate.R | 8 polmineR-0.8.6/polmineR/tests/testthat/test_as.DocumentTermMatrix.R | 4 polmineR-0.8.6/polmineR/tests/testthat/test_as.markdown.R | 4 polmineR-0.8.6/polmineR/tests/testthat/test_as.regions.R | 1 polmineR-0.8.6/polmineR/tests/testthat/test_as.speeches.R | 23 polmineR-0.8.6/polmineR/tests/testthat/test_context.R | 57 polmineR-0.8.6/polmineR/tests/testthat/test_cooccurrences.R | 12 polmineR-0.8.6/polmineR/tests/testthat/test_cpos.R | 11 polmineR-0.8.6/polmineR/tests/testthat/test_dispersion.R | 54 polmineR-0.8.6/polmineR/tests/testthat/test_encodings.R |only polmineR-0.8.6/polmineR/tests/testthat/test_features.R | 26 polmineR-0.8.6/polmineR/tests/testthat/test_format.R |only polmineR-0.8.6/polmineR/tests/testthat/test_get_token_stream.R | 44 polmineR-0.8.6/polmineR/tests/testthat/test_get_type.R | 4 polmineR-0.8.6/polmineR/tests/testthat/test_hits.R | 4 polmineR-0.8.6/polmineR/tests/testthat/test_kwic.R | 32 polmineR-0.8.6/polmineR/tests/testthat/test_opencpu.R |only polmineR-0.8.6/polmineR/tests/testthat/test_partition_bundle.R | 5 polmineR-0.8.6/polmineR/tests/testthat/test_ranges.R |only polmineR-0.8.6/polmineR/tests/testthat/test_restore.R |only polmineR-0.8.6/polmineR/tests/testthat/test_subcorpus.R | 23 polmineR-0.8.6/polmineR/tests/testthat/test_terms.R | 12 polmineR-0.8.6/polmineR/vignettes/OpenCPU.Rmd | 2 polmineR-0.8.6/polmineR/vignettes/encodings.Rmd |only polmineR-0.8.6/polmineR/vignettes/vignette.Rmd | 27 156 files changed, 5949 insertions(+), 3427 deletions(-)
Title: Estimation of Accuracy in Multisite Machine-Learning Models
Description: The effects of the site may severely bias the accuracy of a multisite machine-learning model, even if the analysts removed them when fitting the model in the 'training set' and applying the model in the 'test set'. This simple R package estimates the accuracy of a multisite machine-learning model unbiasedly, as described in (Solanes et al., Psychiatry Research: Neuroimaging 2021, 314:111313). It currently supports the estimation of sensitivity, specificity, balanced accuracy (for binary or multinomial variables), the area under the curve, correlation, mean squarer error, and hazard ratio for binomial, multinomial, gaussian, and survival (time-to-event) outcomes.
Author: Joaquim Radua
Maintainer: Joaquim Radua <quimradua@gmail.com>
Diff between multisite.accuracy versions 1.0 dated 2021-05-28 and 1.1 dated 2022-05-05
DESCRIPTION | 10 MD5 | 7 NEWS |only R/source.R | 636 ++++++++++++++++++++++++---------------------- man/multisite.accuracy.Rd | 8 5 files changed, 346 insertions(+), 315 deletions(-)
More information about multisite.accuracy at CRAN
Permanent link
Title: Download Flight and Airport Data from Brazil
Description: Download flight and airport data from Brazil’s Civil Aviation Agency
(ANAC) <https://www.gov.br/anac>. The data includes detailed
information on all aircrafts, aerodromes, airports, and airport
movements registered in ANAC, on airfares and on every international
flight to and from Brazil, as well as domestic flights within the country.
Author: Rafael H. M. Pereira [aut, cre]
,
Ipea - Institute for Applied Economic Research [cph, fnd]
Maintainer: Rafael H. M. Pereira <rafa.pereira.br@gmail.com>
Diff between flightsbr versions 0.1.2 dated 2022-03-18 and 0.2.0 dated 2022-05-05
DESCRIPTION | 12 MD5 | 56 ++- NAMESPACE | 2 NEWS.md | 34 +- R/read_aircrafts.R | 5 R/read_airfares.R |only R/read_airport_movements.R | 4 R/read_airports.R | 6 R/read_flights.R | 5 R/utils.R | 300 +++++++++++++++++---- README.md | 13 inst/CITATION | 4 inst/doc/flights.Rmd | 2 inst/doc/flights.html | 2 inst/doc/intro_flightsbr.R | 5 inst/doc/intro_flightsbr.Rmd | 24 + inst/doc/intro_flightsbr.html | 22 + man/download_airfares_data.Rd |only man/download_flightsbr_file.Rd |only man/get_airfares_dates_available.Rd |only man/get_airfares_url.Rd |only man/get_airport_movements_url.Rd | 2 man/get_flight_dates_available.Rd | 4 man/read_aircrafts.Rd | 3 man/read_airfares.Rd |only man/read_airport_movements.Rd | 3 man/read_flights.Rd | 5 tests/testthat/test_get_airfares_dates_available.R |only tests/testthat/test_read_airfares.R |only tests/testthat/test_read_airport_movements.R | 4 tests/testthat/test_read_flights.R | 4 vignettes/flights.Rmd | 2 vignettes/intro_flightsbr.Rmd | 24 + 33 files changed, 434 insertions(+), 113 deletions(-)
Title: Fisher's z-Tests Concerning Difference of Correlations
Description: Computations of Fisher's z-tests concerning differences between correlations. diffcor.one() can be used to test whether an expected value differs from an observed value, for example, in construct validation. diffcor.two() can be used to test if the correlation between two constructs differed between two studies. diffcor.dep() can be applied to check if the correlation between two constructs (r12) is significantly different from the correlation of the first construct with a third one (r13), given the intercorrelation of the compared constructs (r23). All outputs provide the compared correlations, test statistic in z-units, and p-values. For diffcor.one() and diffcor.two(), the output further provides confidence intervals of the empirical correlations and the effect size Cohens q. According to Cohen (1988), q = |.10|, |.30| and |.50| are considered small, moderate, and large differences, respectively.
Author: Christian Bloetner
Maintainer: Christian Bloetner <c.bloetner@gmail.com>
Diff between diffcor versions 0.7.0 dated 2021-06-02 and 0.7.1 dated 2022-05-05
DESCRIPTION | 10 +- MD5 | 6 - R/source_code_diffcor.R | 91 ++++++++++++-------- man/diffcor.Rd | 214 +++++++++++++++++++++++------------------------- 4 files changed, 166 insertions(+), 155 deletions(-)
Title: Bayesian Age-Period-Cohort Modeling and Prediction
Description: Bayesian Age-Period-Cohort Modeling and Prediction using efficient Markov Chain Monte Carlo Methods. This is the R version of the previous BAMP software as described in Volker Schmid and Leonhard Held (2007) <DOI:10.18637/jss.v021.i08> Bayesian Age-Period-Cohort Modeling and Prediction - BAMP, Journal of Statistical Software 21:8. This package includes checks of convergence using Gelman's R.
Author: Volker Schmid [aut, cre],
Florian Geressen [ctb],
Leonhard Held [ctb],
Evi Rainer [ctb]
Maintainer: Volker Schmid <volker.schmid@lmu.de>
Diff between bamp versions 2.1.0 dated 2021-06-10 and 2.1.1 dated 2022-05-05
DESCRIPTION | 10 - MD5 | 22 +-- NEWS.md | 3 R/bamp.R | 4 build/vignette.rds |binary inst/doc/bamp.html | 110 +++++++-------- man/bamp.Rd | 2 src/mxs.cc | 13 + vignettes/modeling.html | 183 ++++++++++++------------- vignettes/prediction.html | 74 ++++------ vignettes/publications/publications.Rmd | 5 vignettes/simulation.html | 232 ++++++++++++++++---------------- 12 files changed, 336 insertions(+), 322 deletions(-)
Title: Random Variate Generator for the GIG Distribution
Description: Generator and density function for the
Generalized Inverse Gaussian (GIG) distribution.
Author: Josef Leydold and Wolfgang Hormann
Maintainer: Josef Leydold <josef.leydold@wu.ac.at>
Diff between GIGrvg versions 0.6 dated 2022-04-26 and 0.7 dated 2022-05-05
GIGrvg-0.6/GIGrvg/src/Makevars |only GIGrvg-0.7/GIGrvg/DESCRIPTION | 8 +- GIGrvg-0.7/GIGrvg/MD5 | 15 ++-- GIGrvg-0.7/GIGrvg/NEWS | 8 ++ GIGrvg-0.7/GIGrvg/man/GIGrvg-package.Rd | 4 - GIGrvg-0.7/GIGrvg/man/rgig.Rd | 2 GIGrvg-0.7/GIGrvg/src/GIGrvg.c | 98 +++++++++++++---------------- GIGrvg-0.7/GIGrvg/tests/examples.R | 2 GIGrvg-0.7/GIGrvg/tests/examples.Rout.save | 59 ++++++++--------- 9 files changed, 99 insertions(+), 97 deletions(-)
Title: Miscellaneous Functions for the Analysis of Educational
Assessments
Description: Miscellaneous functions for data cleaning and data analysis of educational assessments. Includes functions for descriptive
analyses, character vector manipulations and weighted statistics. Mainly a lightweight dependency for the packages 'eatRep',
'eatGADS', 'eatPrep' and 'eatModel' (which will be subsequently submitted to 'CRAN').
The function for defining (weighted) contrasts in weighted effect coding refers to
te Grotenhuis et al. (2017) <doi:10.1007/s00038-016-0901-1>.
Functions for weighted statistics refer to
Wolter (2007) <doi:10.1007/978-0-387-35099-8>.
Author: Sebastian Weirich [aut, cre],
Martin Hecht [aut],
Karoline Sachse [aut],
Benjamin Becker [aut],
Nicole Mahler [aut]
Maintainer: Sebastian Weirich <sebastian.weirich@iqb.hu-berlin.de>
Diff between eatTools versions 0.7.1 dated 2021-11-10 and 0.7.2 dated 2022-05-05
eatTools-0.7.1/eatTools/man/eatTools.Rd |only eatTools-0.7.2/eatTools/DESCRIPTION | 6 +-- eatTools-0.7.2/eatTools/MD5 | 20 ++++++++--- eatTools-0.7.2/eatTools/NAMESPACE | 5 ++ eatTools-0.7.2/eatTools/NEWS.md | 10 ++++- eatTools-0.7.2/eatTools/R/makeDataFrame.r |only eatTools-0.7.2/eatTools/R/mergeAttr.r |only eatTools-0.7.2/eatTools/R/pwc.r |only eatTools-0.7.2/eatTools/man/addLeadingZeros.Rd | 2 - eatTools-0.7.2/eatTools/man/eatTools-package.Rd |only eatTools-0.7.2/eatTools/man/makeDataFrame.rd |only eatTools-0.7.2/eatTools/man/mergeAttr.rd |only eatTools-0.7.2/eatTools/man/pwc.rd |only eatTools-0.7.2/eatTools/tests/testthat/helper_tbl_mtcars.RDS |only eatTools-0.7.2/eatTools/tests/testthat/test_makeDataFrame.R |only eatTools-0.7.2/eatTools/tests/testthat/test_mergeAttr.R |only eatTools-0.7.2/eatTools/tests/testthat/test_pwc.R |only 17 files changed, 31 insertions(+), 12 deletions(-)
Title: A 'Bootstrap 4' Version of 'shinydashboard'
Description: Make 'Bootstrap 4' Shiny dashboards. Use the full power
of 'AdminLTE3', a dashboard template built on top of 'Bootstrap 4'
<https://github.com/ColorlibHQ/AdminLTE>.
Author: David Granjon [aut, cre],
RinteRface [cph],
Almasaeed Studio [ctb, cph] ,
Winston Chang [ctb, cph]
Maintainer: David Granjon <dgranjon@ymail.com>
Diff between bs4Dash versions 2.0.3 dated 2021-09-16 and 2.1.0 dated 2022-05-05
bs4Dash-2.0.3/bs4Dash/inst/bs4Dash-2.0.3 |only bs4Dash-2.0.3/bs4Dash/inst/examples/showcase/rsconnect |only bs4Dash-2.0.3/bs4Dash/man/bs4Dash.Rd |only bs4Dash-2.1.0/bs4Dash/DESCRIPTION | 14 bs4Dash-2.1.0/bs4Dash/MD5 | 101 - bs4Dash-2.1.0/bs4Dash/NEWS.md | 20 bs4Dash-2.1.0/bs4Dash/R/bs4Dash-package.r | 1 bs4Dash-2.1.0/bs4Dash/R/bs4DashGallery.R | 2 bs4Dash-2.1.0/bs4Dash/R/cards.R | 38 bs4Dash-2.1.0/bs4Dash/R/dashboardHeader.R | 2 bs4Dash-2.1.0/bs4Dash/R/dashboardSidebar.R | 1 bs4Dash-2.1.0/bs4Dash/R/render-functions.R | 9 bs4Dash-2.1.0/bs4Dash/R/tabs.R | 5 bs4Dash-2.1.0/bs4Dash/R/useful-items.R | 28 bs4Dash-2.1.0/bs4Dash/R/utils.R | 14 bs4Dash-2.1.0/bs4Dash/README.md | 38 bs4Dash-2.1.0/bs4Dash/build/bs4Dash.pdf |binary bs4Dash-2.1.0/bs4Dash/build/vignette.rds |binary bs4Dash-2.1.0/bs4Dash/inst/bs4Dash-2.1.0 |only bs4Dash-2.1.0/bs4Dash/inst/doc/bs4Dash.R | 2 bs4Dash-2.1.0/bs4Dash/inst/doc/bs4Dash.Rmd | 4 bs4Dash-2.1.0/bs4Dash/inst/doc/bs4Dash.html | 268 -- bs4Dash-2.1.0/bs4Dash/inst/doc/css-preloader.html | 262 -- bs4Dash-2.1.0/bs4Dash/inst/doc/extra-elements.html | 542 +---- bs4Dash-2.1.0/bs4Dash/inst/doc/improved-boxes.R | 2 bs4Dash-2.1.0/bs4Dash/inst/doc/improved-boxes.Rmd | 2 bs4Dash-2.1.0/bs4Dash/inst/doc/improved-boxes.html | 798 +++----- bs4Dash-2.1.0/bs4Dash/inst/doc/more-skins.html | 438 +--- bs4Dash-2.1.0/bs4Dash/inst/doc/step-by-step.html | 911 +++------- bs4Dash-2.1.0/bs4Dash/inst/examples/showcase/app.R | 101 - bs4Dash-2.1.0/bs4Dash/inst/examples/vignettes-demos/socialBox/app.R | 2 bs4Dash-2.1.0/bs4Dash/man/app_container.Rd |only bs4Dash-2.1.0/bs4Dash/man/attachmentBlock.Rd | 2 bs4Dash-2.1.0/bs4Dash/man/box.Rd | 4 bs4Dash-2.1.0/bs4Dash/man/carousel.Rd | 4 bs4Dash-2.1.0/bs4Dash/man/dashboardControlbar.Rd | 6 bs4Dash-2.1.0/bs4Dash/man/dashboardUser.Rd | 11 bs4Dash-2.1.0/bs4Dash/man/dropdownMenu.Rd | 2 bs4Dash-2.1.0/bs4Dash/man/infoBox.Rd | 11 bs4Dash-2.1.0/bs4Dash/man/jumbotron.Rd | 2 bs4Dash-2.1.0/bs4Dash/man/listgroup.Rd | 6 bs4Dash-2.1.0/bs4Dash/man/renderMenu.Rd | 11 bs4Dash-2.1.0/bs4Dash/man/socialBox.Rd | 4 bs4Dash-2.1.0/bs4Dash/man/tabBox.Rd | 36 bs4Dash-2.1.0/bs4Dash/man/tabsetPanel.Rd | 6 bs4Dash-2.1.0/bs4Dash/man/timeline.Rd | 10 bs4Dash-2.1.0/bs4Dash/man/userBox.Rd | 2 bs4Dash-2.1.0/bs4Dash/man/valueBox.Rd | 15 bs4Dash-2.1.0/bs4Dash/tests/testthat/test-bs4Cards.R | 16 bs4Dash-2.1.0/bs4Dash/vignettes/bs4Dash.Rmd | 4 bs4Dash-2.1.0/bs4Dash/vignettes/improved-boxes.Rmd | 2 51 files changed, 1297 insertions(+), 2462 deletions(-)
Title: Small Area Estimation Evaluation
Description: Allows users to produce diagnostic procedures and graphic tools for the evaluation of Small Area estimators.
Author: Andrea Fasulo [aut, cre]
Maintainer: Andrea Fasulo <fasulo@istat.it>
Diff between SAEval versions 0.1.3 dated 2022-03-30 and 0.1.4 dated 2022-05-05
SAEval-0.1.3/SAEval/data/SAEval_example_shp.rda |only SAEval-0.1.4/SAEval/DESCRIPTION | 6 +-- SAEval-0.1.4/SAEval/MD5 | 24 +++++++------ SAEval-0.1.4/SAEval/NAMESPACE | 4 +- SAEval-0.1.4/SAEval/R/bias.R | 42 +++++++++++------------- SAEval-0.1.4/SAEval/R/cinterval.R |only SAEval-0.1.4/SAEval/R/cv_table.R | 8 ++++ SAEval-0.1.4/SAEval/R/map_sae.R | 2 - SAEval-0.1.4/SAEval/data/SAEval_example.rda |binary SAEval-0.1.4/SAEval/data/datalist | 2 - SAEval-0.1.4/SAEval/data/sa_shp.rda |only SAEval-0.1.4/SAEval/man/cinterval.Rd |only SAEval-0.1.4/SAEval/man/cv_table.Rd | 5 +- SAEval-0.1.4/SAEval/man/map_sae.Rd | 2 - SAEval-0.1.4/SAEval/man/sa_shp.Rd | 6 +-- 15 files changed, 54 insertions(+), 47 deletions(-)
Title: Combining Tree-Boosting with Gaussian Process and Mixed Effects
Models
Description: An R package that allows for combining tree-boosting with Gaussian process and mixed effects models. It also allows for independently doing tree-boosting as well as inference and prediction for Gaussian process and mixed effects models. See <https://github.com/fabsig/GPBoost> for more information on the software and Sigrist (2020) <arXiv:2004.02653> and Sigrist (2021) <arXiv:2105.08966> for more information on the methodology.
Author: Fabio Sigrist [aut, cre],
Benoit Jacob [cph],
Gael Guennebaud [cph],
Nicolas Carre [cph],
Pierre Zoppitelli [cph],
Gauthier Brun [cph],
Jean Ceccato [cph],
Jitse Niesen [cph],
Other authors of Eigen for the included version of Eigen [ctb, cph],
Timot [...truncated...]
Maintainer: Fabio Sigrist <fabiosigrist@gmail.com>
Diff between gpboost versions 0.7.3.1 dated 2022-03-25 and 0.7.5 dated 2022-05-05
gpboost-0.7.3.1/gpboost/demo/linear_Gaussian_process_mixed_effects_models.R |only gpboost-0.7.5/gpboost/DESCRIPTION | 8 gpboost-0.7.5/gpboost/MD5 | 74 - gpboost-0.7.5/gpboost/NAMESPACE | 5 gpboost-0.7.5/gpboost/R/GPModel.R | 233 +++-- gpboost-0.7.5/gpboost/R/gpb.plot.partial.dependence.R | 112 ++ gpboost-0.7.5/gpboost/README.md | 1 gpboost-0.7.5/gpboost/configure.ac | 2 gpboost-0.7.5/gpboost/demo/00Index | 1 gpboost-0.7.5/gpboost/demo/GPBoost_algorithm.R | 24 gpboost-0.7.5/gpboost/demo/generalized_linear_Gaussian_process_mixed_effects_models.R | 389 +++++++- gpboost-0.7.5/gpboost/man/GPModel.Rd | 1 gpboost-0.7.5/gpboost/man/fit.GPModel.Rd | 1 gpboost-0.7.5/gpboost/man/fitGPModel.Rd | 1 gpboost-0.7.5/gpboost/man/gpb.plot.part.dep.interact.Rd |only gpboost-0.7.5/gpboost/man/loadGPModel.Rd | 1 gpboost-0.7.5/gpboost/man/predict.GPModel.Rd | 1 gpboost-0.7.5/gpboost/man/predict_training_data_random_effects.GPModel.Rd |only gpboost-0.7.5/gpboost/man/predict_training_data_random_effects.Rd |only gpboost-0.7.5/gpboost/man/saveGPModel.Rd | 1 gpboost-0.7.5/gpboost/man/set_prediction_data.GPModel.Rd | 1 gpboost-0.7.5/gpboost/man/set_prediction_data.Rd | 1 gpboost-0.7.5/gpboost/man/summary.GPModel.Rd | 1 gpboost-0.7.5/gpboost/src/GP_utils.cpp | 2 gpboost-0.7.5/gpboost/src/Vecchia_utils.cpp | 365 ++++---- gpboost-0.7.5/gpboost/src/c_api.cpp | 12 gpboost-0.7.5/gpboost/src/gpboost_R.cpp | 16 gpboost-0.7.5/gpboost/src/gpboost_R.h | 17 gpboost-0.7.5/gpboost/src/include/GPBoost/likelihoods.h | 290 +----- gpboost-0.7.5/gpboost/src/include/GPBoost/re_comp.h | 15 gpboost-0.7.5/gpboost/src/include/GPBoost/re_model.h | 12 gpboost-0.7.5/gpboost/src/include/GPBoost/re_model_template.h | 438 ++++++---- gpboost-0.7.5/gpboost/src/include/GPBoost/sparse_matrix_utils.h | 16 gpboost-0.7.5/gpboost/src/include/LightGBM/c_api.h | 15 gpboost-0.7.5/gpboost/src/re_model.cpp | 50 + gpboost-0.7.5/gpboost/src/sparse_matrix_utils.cpp | 29 gpboost-0.7.5/gpboost/tests/testthat/test_GPModel_combined_GP_random_effects.R | 9 gpboost-0.7.5/gpboost/tests/testthat/test_GPModel_gaussian_process.R | 10 gpboost-0.7.5/gpboost/tests/testthat/test_GPModel_grouped_random_effects.R | 50 + gpboost-0.7.5/gpboost/tests/testthat/test_GPModel_non_Gaussian_data.R | 60 + 40 files changed, 1479 insertions(+), 785 deletions(-)
Title: In-Memory Caching of Repeated Computations (Memoization)
Description: A simple in-memory, LRU cache that can be wrapped
around any function to memoize it. The cache is keyed on a hash of the
input data (using 'digest') or on pointer equivalence.
Author: Peter Meilstrup <peter.meilstrup@gmail.com>
Maintainer: Peter Meilstrup <peter.meilstrup@gmail.com>
Diff between memo versions 1.0.1 dated 2018-01-03 and 1.0.2 dated 2022-05-05
DESCRIPTION | 12 - MD5 | 19 +-- NEWS | 6 R/cache.R | 6 README.md | 183 +++++++++++++++------------- build/vignette.rds |binary inst/doc/README.R | 55 ++++---- inst/doc/README.Rmd | 86 +++++++------ inst/doc/README.html | 291 +++++++++++++++++++++++++++------------------- vignettes/README-woven.md |only vignettes/README.Rmd | 86 +++++++------ 11 files changed, 419 insertions(+), 325 deletions(-)
Title: Mixture and Flexible Discriminant Analysis
Description: Mixture and flexible discriminant analysis, multivariate
adaptive regression splines (MARS), BRUTO, and vector-response smoothing splines.
Hastie, Tibshirani and Friedman (2009) "Elements of Statistical Learning (second edition, chap 12)" Springer, New York.
Author: S original by Trevor Hastie & Robert Tibshirani. Original R port by Friedrich Leisch, Kurt Hornik and Brian D. Ripley. Balasubramanian Narasimhan has contributed to the upgrading of the code.
Maintainer: Trevor Hastie <hastie@stanford.edu>
Diff between mda versions 0.5-2 dated 2020-06-29 and 0.5-3 dated 2022-05-05
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- R/mda.R | 38 +++++++++++++++++++------------------- R/mda.fit.R | 18 +++++++++--------- man/ESL.mixture.Rd | 2 +- man/bruto.Rd | 2 +- 6 files changed, 39 insertions(+), 39 deletions(-)
Title: Extra Appenders for 'lgr'
Description: Additional appenders for the logging package 'lgr' that
support logging to databases, email and push notifications.
Author: Stefan Fleck [aut, cre]
Maintainer: Stefan Fleck <stefan.b.fleck@gmail.com>
Diff between lgrExtra versions 0.0.5 dated 2021-02-24 and 0.0.6 dated 2022-05-05
DESCRIPTION | 24 LICENSE | 4 MD5 | 78 - NAMESPACE | 54 NEWS.md | 24 R/AppenderDbi.R | 1171 +++++++-------- R/AppenderDigest.R | 1204 ++++++++-------- R/AppenderDt.R | 612 ++++---- R/AppenderElasticSearch.R |only R/AppenderSyslog.R | 268 +-- R/LayoutDbi.R | 1062 +++++++------- R/LayoutElasticSearch.R |only R/SerializerJson.R | 300 +-- R/lgrExtra-package.R | 32 R/utils-sfmisc.R | 1654 ++++++++++++---------- R/utils-test.R | 110 - R/utils.R | 34 README.md | 107 - inst/WORDLIST | 87 - man/AppenderDbi.Rd | 420 ++--- man/AppenderDigest.Rd | 180 +- man/AppenderDt.Rd | 351 ++-- man/AppenderElasticSearch.Rd |only man/AppenderGmail.Rd | 201 +- man/AppenderMail.Rd | 284 +-- man/AppenderPushbullet.Rd | 375 ++-- man/AppenderSendmail.Rd | 325 ++-- man/AppenderSyslog.Rd | 277 +-- man/LayoutDbi.Rd | 397 ++--- man/LayoutElasticSearch.Rd |only man/Serializer.Rd | 204 +- man/lgrExtra-package.Rd | 31 man/select_dbi_layout.Rd | 40 man/unpack_json_cols.Rd | 74 tests/testthat.R | 8 tests/testthat/integration_tests |only tests/testthat/manual_tests/test_AppenderDigest.R | 96 - tests/testthat/test_AppenderDbi.R | 1204 ++++++++-------- tests/testthat/test_AppenderDt.R | 340 ++-- tests/testthat/test_AppenderSyslog.R | 72 tests/testthat/test_SerializerJson.R | 128 - tests/testthat/test_print_Appender.R | 56 42 files changed, 6048 insertions(+), 5840 deletions(-)
Title: Dynamic Mode Decomposition for Multivariate Time Feature
Prediction
Description: An application of Dynamic Mode Decomposition for prediction of time features. Automatic search for the best model across the space of all possible feature combinations and ranks of Singular Value Decomposition.
Author: Giancarlo Vercellino [aut, cre, cph]
Maintainer: Giancarlo Vercellino <giancarlo.vercellino@gmail.com>
Diff between dymo versions 1.0.0 dated 2022-05-04 and 1.1.0 dated 2022-05-05
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/main.R | 2 +- man/dymo.Rd | 4 ++-- 4 files changed, 9 insertions(+), 9 deletions(-)
Title: Datasets to Measure the Alignment of Corporate Loan Books with
Climate Goals
Description: These datasets support the implementation in R of the
software 'PACTA' (Paris Agreement Capital Transition Assessment),
which is a free tool that calculates the alignment between corporate
lending portfolios and climate scenarios
(<https://2degrees-investing.org/>). Financial institutions use
'PACTA' to study how their capital allocation decisions align with
climate change mitigation goals. Because both financial institutions
and market data providers keep their data private, this package
provides fake, public data to enable the development and use of
'PACTA' in R.
Author: Jackson Hoffart [aut, cre, dtc]
,
Mauro Lepore [aut, ctr] ,
Klaus Hagedorn [aut],
2 Degrees Investing Initiative [cph, fnd]
Maintainer: Jackson Hoffart <jackson.hoffart@gmail.com>
Diff between r2dii.data versions 0.2.2 dated 2021-09-03 and 0.3.0 dated 2022-05-05
r2dii.data-0.2.2/r2dii.data/data/ald_demo.rda |only r2dii.data-0.2.2/r2dii.data/tests/testthat/_snaps/ald_demo.md |only r2dii.data-0.3.0/r2dii.data/DESCRIPTION | 48 ++--- r2dii.data-0.3.0/r2dii.data/MD5 | 95 +++++----- r2dii.data-0.3.0/r2dii.data/NAMESPACE | 1 r2dii.data-0.3.0/r2dii.data/NEWS.md | 8 r2dii.data-0.3.0/r2dii.data/R/abcd_demo.R |only r2dii.data-0.3.0/r2dii.data/R/ald_demo.R | 15 - r2dii.data-0.3.0/r2dii.data/R/r2dii.data-package.R | 1 r2dii.data-0.3.0/r2dii.data/R/utils.R | 2 r2dii.data-0.3.0/r2dii.data/README.md | 85 ++++---- r2dii.data-0.3.0/r2dii.data/data/abcd_demo.rda |only r2dii.data-0.3.0/r2dii.data/data/ald_demo.R |only r2dii.data-0.3.0/r2dii.data/data/cnb_classification.rda |binary r2dii.data-0.3.0/r2dii.data/data/co2_intensity_scenario_demo.rda |binary r2dii.data-0.3.0/r2dii.data/data/data_dictionary.rda |binary r2dii.data-0.3.0/r2dii.data/data/gics_classification.rda |binary r2dii.data-0.3.0/r2dii.data/data/green_or_brown.rda |binary r2dii.data-0.3.0/r2dii.data/data/isic_classification.rda |binary r2dii.data-0.3.0/r2dii.data/data/iso_codes.rda |binary r2dii.data-0.3.0/r2dii.data/data/loanbook_demo.rda |binary r2dii.data-0.3.0/r2dii.data/data/nace_classification.rda |binary r2dii.data-0.3.0/r2dii.data/data/naics_classification.rda |binary r2dii.data-0.3.0/r2dii.data/data/overwrite_demo.rda |binary r2dii.data-0.3.0/r2dii.data/data/psic_classification.rda |binary r2dii.data-0.3.0/r2dii.data/data/region_isos.rda |binary r2dii.data-0.3.0/r2dii.data/data/region_isos_demo.rda |binary r2dii.data-0.3.0/r2dii.data/data/scenario_demo_2020.rda |binary r2dii.data-0.3.0/r2dii.data/data/sector_classifications.rda |binary r2dii.data-0.3.0/r2dii.data/data/sic_classification.rda |binary r2dii.data-0.3.0/r2dii.data/inst/WORDLIST | 7 r2dii.data-0.3.0/r2dii.data/man/abcd_demo.Rd |only r2dii.data-0.3.0/r2dii.data/man/ald_demo.Rd | 44 ---- r2dii.data-0.3.0/r2dii.data/man/co2_intensity_scenario_demo.Rd | 2 r2dii.data-0.3.0/r2dii.data/man/data_dictionary.Rd | 2 r2dii.data-0.3.0/r2dii.data/man/figures |only r2dii.data-0.3.0/r2dii.data/man/loanbook_demo.Rd | 2 r2dii.data-0.3.0/r2dii.data/man/overwrite_demo.Rd | 2 r2dii.data-0.3.0/r2dii.data/man/r2dii.data-package.Rd | 21 -- r2dii.data-0.3.0/r2dii.data/man/region_isos.Rd | 2 r2dii.data-0.3.0/r2dii.data/man/region_isos_demo.Rd | 2 r2dii.data-0.3.0/r2dii.data/man/scenario_demo_2020.Rd | 2 r2dii.data-0.3.0/r2dii.data/tests/testthat/_snaps/abcd_demo.md |only r2dii.data-0.3.0/r2dii.data/tests/testthat/_snaps/data_dictionary.md | 18 - r2dii.data-0.3.0/r2dii.data/tests/testthat/_snaps/loanbook_demo.md | 4 r2dii.data-0.3.0/r2dii.data/tests/testthat/_snaps/region_isos.md | 18 - r2dii.data-0.3.0/r2dii.data/tests/testthat/test-abcd_demo.R |only r2dii.data-0.3.0/r2dii.data/tests/testthat/test-ald_demo.R | 36 --- r2dii.data-0.3.0/r2dii.data/tests/testthat/test-region_isos.R | 34 +++ 49 files changed, 210 insertions(+), 241 deletions(-)
Title: Dynamic Extensions for Network Objects
Description: Simple interface routines to facilitate the handling of network objects with complex intertemporal data. This is a part of the "statnet" suite of packages for network analysis.
Author: Carter T. Butts [aut],
Ayn Leslie-Cook [aut],
Pavel N. Krivitsky [aut],
Skye Bender-deMoll [aut, cre],
Zack Almquist [ctb],
David R. Hunter [ctb],
Li Wang [ctb],
Kirk Li [ctb],
Steven M. Goodreau [ctb],
Jeffrey Horner [ctb],
Martina Morris [ctb]
Maintainer: Skye Bender-deMoll <skyebend@uw.edu>
Diff between networkDynamic versions 0.11.1 dated 2022-04-05 and 0.11.2 dated 2022-05-05
ChangeLog | 2 ++ DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- inst/doc/networkDynamic.pdf |binary man/networkDynamic-package.Rd | 2 +- 5 files changed, 11 insertions(+), 9 deletions(-)
More information about networkDynamic at CRAN
Permanent link
Title: Tests of Randomness and Tests of Independence
Description: Functions for testing randomness for a univariate time series with arbitrary distribution (discrete, continuous, mixture of both types) and for testing independence between random variables with arbitrary distributions. The test statistics are based on the multilinear empirical copula and multipliers are used to compute P-values. The test of independence between random variables appeared in Genest, Nešlehová, Rémillard & Murphy (2019).
Author: Bouchra R. Nasri [aut, cre, cph],
Bruno N Remillard [aut],
Johanna G Neslehova [aut],
Christian Genest [aut]
Maintainer: Bouchra R. Nasri <bouchra.nasri@umontreal.ca>
Diff between MixedIndTests versions 0.8.0 dated 2022-03-02 and 0.9.1 dated 2022-05-05
DESCRIPTION | 10 +++++----- MD5 | 40 ++++++++++++++++++++-------------------- R/AutoDep.R | 5 ++--- R/Dependogram.R | 7 +++---- R/EstDep.R | 4 ++-- R/EstDepSerial.R | 2 +- R/Sn_A.R | 4 ++-- R/Sn_Aserial.R | 4 ++-- R/Sn_AserialVec.R | 4 ++-- R/Sn_serial.R | 4 ++-- R/TestIndCopula.R | 4 ++-- R/TestIndSerCopula.R | 6 +++--- R/bootstrap.R | 2 +- R/select_p.R | 2 +- R/stat_dep.R | 2 +- R/stat_dep_ser.R | 2 +- man/AutoDep.Rd | 3 --- man/Dependogram.Rd | 3 --- man/TestIndSerCopula.Rd | 4 ++++ man/bootstrap.Rd | 2 +- man/select_p.Rd | 9 +++++---- 21 files changed, 60 insertions(+), 63 deletions(-)
Title: Fast Implementation of the Iterative Proportional Fitting
Procedure in C
Description: A fast (C) implementation of the iterative proportional fitting
procedure.
Author: Alexander W Blocker
Maintainer: Alexander W Blocker <ablocker@gmail.com>
Diff between ipfp versions 1.0.1 dated 2016-02-14 and 1.0.2 dated 2022-05-05
DESCRIPTION | 11 +++++------ MD5 | 7 ++++--- R/zzz.R |only man/ipfp.Rd | 12 +++++++++--- src/ipfp.c | 16 ++++++++++++++-- 5 files changed, 32 insertions(+), 14 deletions(-)
Title: Estimation and Inference for the Fractionally Cointegrated VAR
Description: Estimation and inference using the Fractionally Cointegrated
Vector Autoregressive (VAR) model. It includes functions for model specification,
including lag selection and cointegration rank selection, as well as a comprehensive
set of options for hypothesis testing, including tests of hypotheses on the
cointegrating relations, the adjustment coefficients and the fractional
differencing parameters.
An article describing the FCVAR model with examples is available on the Webpage
<https://sites.google.com/view/mortennielsen/software>.
Author: Lealand Morin [aut, cre] ,
Morten Nielsen [aut] ,
Michal Popiel [aut]
Maintainer: Lealand Morin <lealand.morin@ucf.edu>
Diff between FCVAR versions 0.1.2 dated 2022-03-10 and 0.1.4 dated 2022-05-05
DESCRIPTION | 8 +-- MD5 | 12 ++--- NEWS.md | 9 +-- R/FCVAR.R | 5 +- README.md | 102 +++++++++++++++++++++++++-------------------- man/FCVAR.Rd | 5 +- tests/testthat/test_estn.R | 16 ++++--- 7 files changed, 91 insertions(+), 66 deletions(-)
Title: Dissimilarity-Based Functions for Ecological Analysis
Description: Dissimilarity-based analysis functions including ordination and Mantel test functions, intended for use with spatial and community data. The original package description is in Goslee and Urban (2007) <doi:10.18637/jss.v022.i07>, with further statistical detail in Goslee (2010) <doi:10.1007/s11258-009-9641-0>.
Author: Sarah Goslee [aut, cre],
Dean Urban [aut]
Maintainer: Sarah Goslee <Sarah.Goslee@usda.gov>
Diff between ecodist versions 2.0.7 dated 2020-08-28 and 2.0.9 dated 2022-05-05
DESCRIPTION | 8 ++--- MD5 | 16 +++++------ R/distance.R | 18 +++++++----- build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 5 ++- inst/doc/dissimilarity.html | 63 +++++++++++++++++++++++++++++++------------- man/distance.Rd | 3 +- src/ecodist.c | 19 +++++++++---- 9 files changed, 86 insertions(+), 46 deletions(-)
Title: Conditional Manifold Learning
Description: Find a low-dimensional embedding of high-dimensional data, conditioning on auxiliary manifold information. The current version supports conditional MDS and conditional ISOMAP.
Author: Anh Tuan Bui [aut, cre]
Maintainer: Anh Tuan Bui <atbui@u.northwestern.edu>
Diff between cml versions 0.0.3 dated 2022-04-28 and 0.0.5 dated 2022-05-05
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/ccor.R | 2 +- R/condIsomap.R | 21 ++++----------------- 4 files changed, 12 insertions(+), 25 deletions(-)
Title: Biochemically Intuitive Generalized Loewe Model
Description: Response surface methods for drug synergy analysis. Available
methods include generalized and classical Loewe formulations as well as Highest
Single Agent methodology. Response surfaces can be plotted in an interactive
3-D plot and formal statistical tests for presence of synergistic effects are
available. Implemented methods and tests are described in the article
"BIGL: Biochemically Intuitive Generalized Loewe null model for prediction
of the expected combined effect compatible with partial agonism and antagonism"
by Koen Van der Borght, Annelies Tourny, Rytis Bagdziunas, Olivier Thas,
Maxim Nazarov, Heather Turner, Bie Verbist & Hugo Ceulemans (2017)
<doi:10.1038/s41598-017-18068-5>.
Author: Heather Turner, Annelies Tourny, Olivier Thas, Maxim Nazarov, Rytis Bagdziunas, Stijn Hawinkel
Maintainer: Maxim Nazarov <maxim.nazarov@openanalytics.eu>
Diff between BIGL versions 1.6.5 dated 2021-10-27 and 1.6.6 dated 2022-05-05
DESCRIPTION | 12 MD5 | 14 build/vignette.rds |binary inst/NEWS | 2 inst/doc/analysis.html | 8363 +++++++++++++++++++++++++++++++++++++++- inst/doc/methodology.html | 753 +++ tests/testthat.R | 3 tests/testthat/test_marginals.R | 9 8 files changed, 8925 insertions(+), 231 deletions(-)
More information about biosensors.usc at CRAN
Permanent link
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-05-04 0.41.1
2018-07-03 0.40.1
2015-12-31 0.37.3
2015-11-07 0.37.1
2014-12-08 0.35
2014-04-25 0.33
2014-04-04 0.32
2014-03-24 0.31
2014-03-21 0.30
2014-02-25 0.21
2014-02-11 0.2
Title: Decorate a 'ggplot' with Associated Information
Description: For many times, we are not just aligning plots as what 'cowplot' and 'patchwork' did. Users would like to align associated information that requires axes to be exactly matched in subplots, e.g. hierarchical clustering with a heatmap. This package provides utilities to aligns associated subplots to a main plot at different sides (left, right, top and bottom) with axes exactly matched.
Author: Guangchuang Yu [aut, cre, cph]
Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>
Diff between aplot versions 0.1.3 dated 2022-03-31 and 0.1.4 dated 2022-05-05
aplot-0.1.3/aplot/man/ggrange.Rd |only aplot-0.1.4/aplot/DESCRIPTION | 10 +++---- aplot-0.1.4/aplot/MD5 | 16 +++++------ aplot-0.1.4/aplot/NAMESPACE | 9 +++++- aplot-0.1.4/aplot/NEWS.md | 6 ++++ aplot-0.1.4/aplot/R/axis.R | 51 +------------------------------------ aplot-0.1.4/aplot/R/plot-list.R | 29 +++++++++++++++++++++ aplot-0.1.4/aplot/R/re-export.R | 14 ++++++++++ aplot-0.1.4/aplot/man/gglist.Rd |only aplot-0.1.4/aplot/man/reexports.Rd | 5 +++ 10 files changed, 76 insertions(+), 64 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-08-02 2.1.5
2017-07-10 1.0.4
2017-07-08 1.0.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-09-20 0.6.7
2021-09-02 0.6.6
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-02-29 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-09-03 2.4.3
2021-02-10 2.4.2
2020-10-14 2.4.1
2020-05-24 2.4.0
2020-02-17 2.3.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-01-26 1.0.2
2022-01-07 1.0.1
2021-12-20 1.0.0