Title: Hierarchical Dirichlet Process Generalized Linear Models
Description: Implementation of MCMC algorithms to estimate the Hierarchical Dirichlet Process Generalized Linear Model (hdpGLM) presented in the paper Ferrari (2020) Modeling Context-Dependent Latent Heterogeneity, Political Analysis <DOI:10.1017/pan.2019.13>.
Author: Diogo Ferrari [aut, cre]
Maintainer: Diogo Ferrari <diogoferrari@gmail.com>
Diff between hdpGLM versions 1.0.1 dated 2022-04-23 and 1.0.2 dated 2022-05-06
DESCRIPTION | 8 - MD5 | 31 ++-- NAMESPACE | 4 NEWS.md |only R/src_main.R | 96 ++++++++++---- R/src_r_version.R | 2 R/src_summaries.R | 45 ++++++ R/src_utils.R | 112 ++++++++-------- README.md | 3 build/vignette.rds |binary inst/doc/hdpGLM.R | 2 inst/doc/hdpGLM.Rmd | 6 inst/doc/hdpGLM.html | 335 +++++++++++++++++++++++-------------------------- man/classify.Rd |only man/hdpGLM.Rd | 72 +++++----- man/hdpGLM_classify.Rd | 4 man/nclusters.Rd |only vignettes/hdpGLM.Rmd | 6 18 files changed, 412 insertions(+), 314 deletions(-)
Title: Patient-Reported Outcome Data Analysis with Stan
Description: Algorithms and subroutines for patient-reported outcome data analysis.
Author: Bin Wang [aut, cre]
Maintainer: Bin Wang <bwang831@gmail.com>
Diff between prome versions 0.0.0.8 dated 2022-02-24 and 1.5.6.70 dated 2022-05-06
prome-0.0.0.8/prome/R/memixed.R |only prome-0.0.0.8/prome/inst/stan/att.stan |only prome-0.0.0.8/prome/man/memixed.Rd |only prome-1.5.6.70/prome/DESCRIPTION | 6 +- prome-1.5.6.70/prome/MD5 | 31 ++++++------ prome-1.5.6.70/prome/NAMESPACE | 8 +-- prome-1.5.6.70/prome/R/bate.R |only prome-1.5.6.70/prome/R/means.R | 62 +++++++++++++++--------- prome-1.5.6.70/prome/R/proportions.R | 59 +++++++++++++++------- prome-1.5.6.70/prome/R/ratio.R |only prome-1.5.6.70/prome/inst/stan/ate.stan | 62 +++++++++++++----------- prome-1.5.6.70/prome/inst/stan/ate2m.stan |only prome-1.5.6.70/prome/inst/stan/ate4m.stan |only prome-1.5.6.70/prome/inst/stan/hm2mean.stan |only prome-1.5.6.70/prome/inst/stan/hmmean.stan | 14 +++-- prome-1.5.6.70/prome/inst/stan/proportion.stan | 19 +++---- prome-1.5.6.70/prome/inst/stan/proportions.stan |only prome-1.5.6.70/prome/inst/stan/zate.stan |only prome-1.5.6.70/prome/man/bate.Rd |only prome-1.5.6.70/prome/man/data100x3.Rd | 4 - prome-1.5.6.70/prome/man/meanHM.Rd | 11 +--- prome-1.5.6.70/prome/man/propHM.Rd | 13 ++--- 22 files changed, 167 insertions(+), 122 deletions(-)
Title: Functions for Tidy Analysis and Generation of Random Data
Description: To make it easy to generate random numbers based upon the underlying stats
distribution functions. All data is returned in a tidy and structured
format making working with the data simple and straight forward. Given that the
data is returned in a tidy 'tibble' it lends itself to working with the rest of the
'tidyverse'.
Author: Steven Sanderson [aut, cre],
Steven Sanderson [cph]
Maintainer: Steven Sanderson <spsanderson@gmail.com>
Diff between TidyDensity versions 1.0.1 dated 2022-03-27 and 1.1.0 dated 2022-05-06
DESCRIPTION | 9 MD5 | 270 +++++++----- NAMESPACE | 24 + NEWS.md | 49 ++ R/00_global_variables.R | 14 R/autoplot-combined-dist.R | 26 - R/autoplot-density.R | 26 - R/autoplot-four-graphs.R |only R/autoplot-multi-dist.R | 26 - R/autoplot-randomwalk.R | 2 R/est-param-beta.R | 321 +++++++------- R/est-param-binomial.R | 339 +++++++-------- R/est-param-cauchy.R |only R/est-param-exponential.R | 211 ++++----- R/est-param-gamma.R | 5 R/est-param-geometric.R | 241 +++++----- R/est-param-hypergeometric.R | 439 +++++++++----------- R/est-param-logistic.R | 275 ++++++------ R/est-param-negative-binomial.R | 299 ++++++------- R/est-param-normal.R | 231 +++++----- R/est-param-pareto.R | 243 +++++------ R/est-param-poisson.R | 217 ++++----- R/est-param-uniform.R |only R/est-param-weibull.R |only R/est_param-lognormal.R | 231 +++++----- R/random-tidy-beta.R | 2 R/random-tidy-binomial.R | 2 R/random-tidy-burr-inverse.R | 2 R/random-tidy-burr.R | 2 R/random-tidy-cauchy.R | 2 R/random-tidy-chisquare.R | 2 R/random-tidy-exponential-inverse.R | 2 R/random-tidy-exponential.R | 2 R/random-tidy-f.R | 2 R/random-tidy-gamma-inverse.R | 2 R/random-tidy-gamma.R | 4 R/random-tidy-general-beta.R | 2 R/random-tidy-general-pareto.R | 2 R/random-tidy-geom.R | 2 R/random-tidy-hypergeometric.R | 3 R/random-tidy-logistic.R | 2 R/random-tidy-lognormal.R | 2 R/random-tidy-mixture.R |only R/random-tidy-negative-binomial.R | 2 R/random-tidy-normal-inverse.R | 2 R/random-tidy-normal.R | 2 R/random-tidy-paralogistic.R | 2 R/random-tidy-pareto-inverse.R | 2 R/random-tidy-pareto-single-param.R | 2 R/random-tidy-pareto.R | 2 R/random-tidy-poisson.R | 3 R/random-tidy-t.R |only R/random-tidy-uniform.R | 2 R/random-tidy-weibull-inverse.R | 266 ++++++------ R/random-tidy-weibull.R | 2 R/random-tidy-zero-truc-poisson.R | 2 R/random-tidy-zero-trunc-geometric.R | 2 R/random-tidy-zero-truncated-binomial.R | 2 R/random-zero-trunc-negative-binomial.R | 2 R/stats-beta-tbl.R |only R/stats-binomial-tbl.R |only R/stats-cauchy-tbl.R |only R/stats-chisquare-tbl.R |only R/stats-exponential-tbl.R |only R/stats-f-tbl.R |only R/stats-gamma-tbl.R |only R/stats-geometric-tbl.R |only R/stats-hypergeometric-tbl.R |only R/stats-logistic-tbl.R |only R/stats-lognormal-tbl.R |only R/stats-negative-binomial-tbl.R |only R/stats-normal-tbl.R |only R/stats-pareto-tbl.R |only R/stats-poisson-tbl.R |only R/stats-t-tbl.R |only R/stats-uniform-tbl.R |only R/stats-weibull-tbl.R |only R/tidy_distribution_summary_tbl.R | 162 +++---- README.md | 20 inst/doc/getting-started.html | 40 - man/figures/README-more_than_nine_simulations-1.png |binary man/figures/README-more_than_nine_simulations-2.png |binary man/figures/README-more_than_nine_simulations-3.png |binary man/figures/README-more_than_nine_simulations-4.png |binary man/figures/README-plot_density-1.png |binary man/figures/README-plot_density-2.png |binary man/figures/README-plot_density-3.png |binary man/figures/README-plot_density-4.png |binary man/tidy_autoplot.Rd | 1 man/tidy_beta.Rd | 4 man/tidy_binomial.Rd | 1 man/tidy_burr.Rd | 1 man/tidy_cauchy.Rd | 5 man/tidy_chisquare.Rd | 4 man/tidy_combined_autoplot.Rd | 1 man/tidy_exponential.Rd | 4 man/tidy_f.Rd | 4 man/tidy_four_autoplot.Rd |only man/tidy_gamma.Rd | 6 man/tidy_generalized_beta.Rd | 4 man/tidy_generalized_pareto.Rd | 4 man/tidy_geometric.Rd | 4 man/tidy_hypergeometric.Rd | 3 man/tidy_inverse_burr.Rd | 1 man/tidy_inverse_exponential.Rd | 4 man/tidy_inverse_gamma.Rd | 4 man/tidy_inverse_normal.Rd | 4 man/tidy_inverse_pareto.Rd | 4 man/tidy_inverse_weibull.Rd | 5 man/tidy_logistic.Rd | 4 man/tidy_lognormal.Rd | 4 man/tidy_mixture_density.Rd |only man/tidy_multi_dist_autoplot.Rd | 1 man/tidy_negative_binomial.Rd | 1 man/tidy_normal.Rd | 4 man/tidy_paralogistic.Rd | 4 man/tidy_pareto.Rd | 4 man/tidy_pareto1.Rd | 4 man/tidy_poisson.Rd | 3 man/tidy_random_walk_autoplot.Rd | 1 man/tidy_t.Rd |only man/tidy_uniform.Rd | 5 man/tidy_weibull.Rd | 5 man/tidy_zero_truncated_binomial.Rd | 1 man/tidy_zero_truncated_geometric.Rd | 4 man/tidy_zero_truncated_negative_binomial.Rd | 1 man/tidy_zero_truncated_poisson.Rd | 3 man/util_beta_param_estimate.Rd | 13 man/util_beta_stats_tbl.Rd |only man/util_binomial_param_estimate.Rd | 11 man/util_binomial_stats_tbl.Rd |only man/util_cauchy_param_estimate.Rd |only man/util_cauchy_stats_tbl.Rd |only man/util_chisquare_stats_tbl.Rd |only man/util_exponential_param_estimate.Rd | 13 man/util_exponential_stats_tbl.Rd |only man/util_f_stats_tbl.Rd |only man/util_gamma_param_estimate.Rd | 13 man/util_gamma_stats_tbl.Rd |only man/util_geometric_param_estimate.Rd | 13 man/util_geometric_stats_tbl.Rd |only man/util_hypergeometric_param_estimate.Rd | 13 man/util_hypergeometric_stats_tbl.Rd |only man/util_logistic_param_estimate.Rd | 13 man/util_logistic_stats_tbl.Rd |only man/util_lognormal_param_estimate.Rd | 13 man/util_lognormal_stats_tbl.Rd |only man/util_negative_binomial_param_estimate.Rd | 13 man/util_negative_binomial_stats_tbl.Rd |only man/util_normal_param_estimate.Rd | 13 man/util_normal_stats_tbl.Rd |only man/util_pareto_param_estimate.Rd | 13 man/util_pareto_stats_tbl.Rd |only man/util_poisson_param_estimate.Rd | 13 man/util_poisson_stats_tbl.Rd |only man/util_t_stats_tbl.Rd |only man/util_uniform_param_estimate.Rd |only man/util_uniform_stats_tbl.Rd |only man/util_weibull_param_estimate.Rd |only man/util_weibull_stats_tbl.Rd |only 160 files changed, 2258 insertions(+), 2065 deletions(-)
Title: Mutable and Dynamic Data Models
Description: The base R data.frame, like any vector, is
copied upon modification. This behavior is at odds with
that of GUIs and interactive graphics. To rectify this,
plumbr provides a mutable, dynamic tabular data model.
Models may be chained together to form the complex
plumbing necessary for sophisticated graphical
interfaces. Also included is a
general framework for linking datasets; an typical
use case would be a linked brush.
Author: Michael Lawrence, Hadley Wickham
Maintainer: Michael Lawrence <michafla@gene.com>
Diff between plumbr versions 0.6.9 dated 2014-02-22 and 0.6.10 dated 2022-05-06
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- man/ItemSelection-class.Rd | 14 +++++++------- man/RegionSelection-class.Rd | 6 +++--- 4 files changed, 17 insertions(+), 17 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-09-09 0.1-1
2015-01-17 0.1-0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-12-12 3.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-04-12 0.0.4
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-04-12 1.0-6
2012-12-28 1.0-5
2012-10-17 1.0-4
2012-07-21 1.0-3
2012-04-08 1.0-2
2011-08-08 1.0-1
2011-04-30 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-07-11 1.0
Title: Permutational Algorithm to Simulate Survival Data
Description: This version of the permutational algorithm generates a
dataset in which event and censoring times are conditional on
an user-specified list of covariates, some or all of which are
time-dependent.
Author: Marie-Pierre Sylvestre, Thad Edens, Todd MacKenzie, Michal
Abrahamowicz
Maintainer: Marie-Pierre Sylvestre
<marie-pierre.sylvestre@umontreal.ca>
Diff between PermAlgo versions 1.1 dated 2015-04-01 and 1.2 dated 2022-05-06
DESCRIPTION | 9 - MD5 | 16 - NAMESPACE | 1 R/PermAlgo-internal.R | 90 +++++------ R/permalgorithm.R | 152 +++++++++--------- inst/CITATION | 44 ++--- man/PermAlgo-internal.Rd | 12 - man/PermAlgo-package.Rd | 222 +++++++++++++-------------- man/permalgorithm.Rd | 384 +++++++++++++++++++++++------------------------ 9 files changed, 466 insertions(+), 464 deletions(-)
Title: Memory-Efficient Storage of Large Data on Disk and Fast Access
Functions
Description: The ff package provides data structures that are stored on
disk but behave (almost) as if they were in RAM by transparently
mapping only a section (pagesize) in main memory - the effective
virtual memory consumption per ff object. ff supports R's standard
atomic data types 'double', 'logical', 'raw' and 'integer' and
non-standard atomic types boolean (1 bit), quad (2 bit unsigned),
nibble (4 bit unsigned), byte (1 byte signed with NAs), ubyte (1 byte
unsigned), short (2 byte signed with NAs), ushort (2 byte unsigned),
single (4 byte float with NAs). For example 'quad' allows efficient
storage of genomic data as an 'A','T','G','C' factor. The unsigned
types support 'circular' arithmetic. There is also support for
close-to-atomic types 'factor', 'ordered', 'POSIXct', 'Date' and
custom close-to-atomic types.
ff not only has native C-support for vectors, matrices and arrays
with flexible dimorder (major column-order, major row-order and
generalizations for arrays). There is also a ffdf class not unlike
data.frames and import/export filters for csv files.
ff objects store raw data in binary flat files in native encoding,
and complement this with metadata stored in R as physical and virtual
attributes. ff objects have well-defined hybrid copying semantics,
which gives rise to certain performance improvements through
virtualization. ff objects can be stored and reopened across R
sessions. ff files can be shared by multiple ff R objects
(using different data en/de-coding schemes) in the same process
or from multiple R processes to exploit parallelism. A wide choice of
finalizer options allows to work with 'permanent' files as well as
creating/removing 'temporary' ff files completely transparent to the
user. On certain OS/Filesystem combinations, creating the ff files
works without notable delay thanks to using sparse file allocation.
Several access optimization techniques such as Hybrid Index
Preprocessing and Virtualization are implemented to achieve good
performance even with large datasets, for example virtual matrix
transpose without touching a single byte on disk. Further, to reduce
disk I/O, 'logicals' and non-standard data types get stored native and
compact on binary flat files i.e. logicals take up exactly 2 bits to
represent TRUE, FALSE and NA.
Beyond basic access functions, the ff package also provides
compatibility functions that facilitate writing code for ff and ram
objects and support for batch processing on ff objects (e.g. as.ram,
as.ff, ffapply). ff interfaces closely with functionality from package
'bit': chunked looping, fast bit operations and coercions between
different objects that can store subscript information ('bit',
'bitwhich', ff 'boolean', ri range index, hi hybrid index). This allows
to work interactively with selections of large datasets and quickly
modify selection criteria.
Further high-performance enhancements can be made available upon request.
Author: Daniel Adler [aut],
Christian Glaeser [aut],
Oleg Nenadic [aut],
Jens Oehlschlaegel [aut, cre],
Martijn Schuemie [aut],
Walter Zucchini [aut]
Maintainer: Jens Oehlschlaegel <Jens.Oehlschlaegel@truecluster.com>
Diff between ff versions 4.0.5 dated 2021-10-29 and 4.0.7 dated 2022-05-06
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- NEWS | 11 +++++++++++ R/ff.R | 8 ++++---- R/ffapply.R | 38 +++++++++++++++++++------------------- R/hi.R | 2 +- man/ff.rd | 2 +- man/ffapply.rd | 38 +++++++++++++++++++------------------- 8 files changed, 66 insertions(+), 55 deletions(-)
Title: Neat and Painless Statistical Reporting
Description: User-friendly, clear and simple statistics, primarily for
publication in psychological science. The main functions are wrappers for
other packages, but there are various additions as well. Every relevant step
from data aggregation to reportable printed statistics is covered for basic
experimental designs.
Author: Gaspar Lukacs [aut, cre] ,
Bennett Kleinberg [ctb] ,
Johnny van Doorn [ctb]
Maintainer: Gaspar Lukacs <lkcsgaspar@gmail.com>
Diff between neatStats versions 1.10.1 dated 2022-02-28 and 1.11.0 dated 2022-05-06
DESCRIPTION | 8 +- MD5 | 18 ++-- R/anova_neat.R | 1 R/dems_neat.R | 6 + R/peek_neat.R | 163 +++++++++++++++++++++++------------------ README.md | 2 build/partial.rdb |binary build/vignette.rds |binary inst/doc/example_pipeline.html | 1 man/peek_neat.Rd | 55 ++++++++----- 10 files changed, 146 insertions(+), 108 deletions(-)
Title: Package About Data Manipulation in Pure Base R
Description: Data manipulation in one package and in base R.
Minimal. No dependencies.
'dplyr' and 'tidyr'-like in one place.
Nothing else than base R to build the package.
Author: Jean-Marie Lepioufle [aut, cre]
Maintainer: Jean-Marie Lepioufle <pv71u98h1@gmail.com>
Diff between m61r versions 0.0.2 dated 2021-04-15 and 0.0.3 dated 2022-05-06
DESCRIPTION | 7 - LICENSE | 2 MD5 | 29 +++--- NAMESPACE | 8 + R/bind.R |only R/m61r.R | 15 +++ R/m61r_utils.R | 85 ++++++++++++++++++ README.md | 229 +++++++++++++++++++++++++++++++++++++++++++++++---- build/vignette.rds |binary inst/doc/base_r.R | 3 inst/doc/base_r.Rnw | 1 inst/doc/base_r.pdf |binary inst/doc/m61r.R | 1 inst/doc/m61r.pdf |binary man/m61r.Rd | 21 ++++ vignettes/base_r.Rnw | 1 16 files changed, 363 insertions(+), 39 deletions(-)
Title: "Eating the Liver of Data Science"
Description: Provides a collection of helper functions that make various techniques from data science more user-friendly for non-experts. In this way, our aim is to allow non-experts to become familiar with the techniques with only a minimal level of coding knowledge. Indeed, following an ancient Persian idiom, we refer to this as "eating the liver of data science" which could be interpreted as "getting intimately close with data science". Examples of procedures we include are: data partitioning for out-of-sample testing, computing Mean Squared Error (MSE) for quantifying prediction accuracy, and data transformation (z-score and min-max). Besides such helper functions, the package also includes several interesting datasets that are useful for multivariate analysis.
Author: Reza Mohammadi [aut, cre] ,
Kevin Burke [aut]
Maintainer: Reza Mohammadi <a.mohammadi@uva.nl>
Diff between liver versions 1.11 dated 2022-03-03 and 1.12 dated 2022-05-06
liver-1.11/liver/data/corona.RData |only liver-1.11/liver/man/corona.Rd |only liver-1.12/liver/DESCRIPTION | 8 - liver-1.12/liver/MD5 | 20 +- liver-1.12/liver/NEWS.md | 4 liver-1.12/liver/README.md | 11 + liver-1.12/liver/data/datalist | 1 liver-1.12/liver/inst/doc/liver-example.R | 22 +-- liver-1.12/liver/inst/doc/liver-example.Rmd | 44 +++--- liver-1.12/liver/inst/doc/liver-example.html | 188 +++++++++++---------------- liver-1.12/liver/man/figures/logo.png |binary liver-1.12/liver/vignettes/liver-example.Rmd | 44 +++--- 12 files changed, 168 insertions(+), 174 deletions(-)
Title: R Interface to the 'Protocol Buffers' 'API' (Version 2 or 3)
Description: Protocol Buffers are a way of encoding structured data in an
efficient yet extensible format. Google uses Protocol Buffers for almost all
of its internal 'RPC' protocols and file formats. Additional documentation
is available in two included vignettes one of which corresponds to our 'JSS'
paper (2016, <doi:10.18637/jss.v071.i02>. A sufficiently recent version of
'Protocol Buffers' library is required; currently version 3.3.0 from 2017
is the stated minimum.
Author: Romain Francois, Dirk Eddelbuettel, Murray Stokely and Jeroen Ooms
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RProtoBuf versions 0.4.18 dated 2021-12-16 and 0.4.19 dated 2022-05-06
ChangeLog | 52 ++++++++++++++++++++++++++++++++++++++++ DESCRIPTION | 22 ++++++++-------- MD5 | 41 ++++++++++++++++--------------- NAMESPACE | 2 - R/00classes.R | 2 + R/debug_string.R | 15 ++++++++++- R/internals.R | 11 +++----- R/text_format.R |only R/zzz.R | 8 ++++++ README.md | 1 build/vignette.rds |binary configure | 39 +++++++++++++++++------------- configure.ac | 4 +-- inst/NEWS.Rd | 13 ++++++++-- inst/doc/RProtoBuf-intro.pdf |binary inst/doc/RProtoBuf-paper.pdf |binary inst/doc/RProtoBuf-quickref.pdf |binary inst/tinytest/test_messages.R | 5 +++ man/Message-class.Rd | 3 ++ src/init.c | 2 + src/mutators.cpp | 16 ++++++------ src/wrapper_Message.cpp | 13 +++++++++- 22 files changed, 178 insertions(+), 71 deletions(-)
Title: Utilities for Nephrology
Description: Set of functions to estimate kidney function and other phenotypes of interest in nephrology based on different biomechimal traits. MDRD, CKD-EPI, and Virga equations are compared in Pattaro (2013) <doi:10.1159/000351043>, where the respective references are given. In addition, the software includes Stevens (2008) <doi:10.1053/j.ajkd.2007.11.018> and Cockroft (1976) <doi:10.1159/000180580> formulas. The race-free CKD-EPI equations (2021) <doi:10.1056/NEJMoa2102953> are also implemented from ver.1.3.
Author: Cristian Pattaro, Ryosuke Fujii
Maintainer: Cristian Pattaro <cristian.pattaro@eurac.edu>
Diff between nephro versions 1.2 dated 2017-05-10 and 1.3 dated 2022-05-06
nephro-1.2/nephro/README |only nephro-1.3/nephro/ChangeLog | 14 nephro-1.3/nephro/DESCRIPTION | 12 nephro-1.3/nephro/MD5 | 23 nephro-1.3/nephro/R/nephro.R | 835 ++++++++++++++------------- nephro-1.3/nephro/man/CKDEpi.creat.Rd | 2 nephro-1.3/nephro/man/CKDEpi.creat.cys.Rd | 2 nephro-1.3/nephro/man/CKDEpi.creat.cys.rf.Rd |only nephro-1.3/nephro/man/CKDEpi.creat.rf.Rd |only nephro-1.3/nephro/man/CKDEpi.cys.Rd | 4 nephro-1.3/nephro/man/Stevens.creat.cys.Rd | 2 nephro-1.3/nephro/man/Stevens.cys1.Rd | 2 nephro-1.3/nephro/man/Stevens.cys2.Rd | 2 nephro-1.3/nephro/man/nephro-package.Rd | 172 ++--- 14 files changed, 584 insertions(+), 486 deletions(-)
Title: Tools and GUI for Analyzing Time Series Data of Just Finance and
Econometrics
Description: Support the analysis of financial and econometric time series, including data download.
Author: Ho Tsung-wu
Maintainer: Ho Tsung-wu <tsungwu@ntnu.edu.tw>
Diff between JFE versions 2.5.2 dated 2021-12-05 and 2.5.3 dated 2022-05-06
JFE-2.5.2/JFE/R/07timeSeriesML.R |only JFE-2.5.2/JFE/man/downloadStockAI.Rd |only JFE-2.5.2/JFE/man/ttsAutoML.Rd |only JFE-2.5.2/JFE/man/ttsCaret.Rd |only JFE-2.5.2/JFE/man/ttsDS.Rd |only JFE-2.5.2/JFE/man/ttsLSTM.Rd |only JFE-2.5.2/JFE/man/ttsPlot.Rd |only JFE-2.5.3/JFE/DESCRIPTION | 20 ++-- JFE-2.5.3/JFE/MD5 | 91 +++++++++---------- JFE-2.5.3/JFE/NAMESPACE | 9 + JFE-2.5.3/JFE/R/01utilities.R | 27 ----- JFE-2.5.3/JFE/R/05Portfolio.R | 2 JFE-2.5.3/JFE/R/07dataDownload.R |only JFE-2.5.3/JFE/R/PerformanceIndex.R | 123 +++++++++++++-------------- JFE-2.5.3/JFE/man/ActivePremium.Rd | 26 +---- JFE-2.5.3/JFE/man/AdjustedSharpeRatio.Rd | 32 ++----- JFE-2.5.3/JFE/man/AppraisalRatio.Rd | 27 +---- JFE-2.5.3/JFE/man/BernardoLedoitRatio.Rd | 23 +---- JFE-2.5.3/JFE/man/BurkeRatio.Rd | 24 ++--- JFE-2.5.3/JFE/man/CAPM.jensenAlpha.Rd | 22 +--- JFE-2.5.3/JFE/man/CalmarRatio.Rd | 49 ++++------ JFE-2.5.3/JFE/man/DRatio.Rd | 31 ++---- JFE-2.5.3/JFE/man/DownsideDeviation.Rd | 70 +++------------ JFE-2.5.3/JFE/man/DrawdownPeak.Rd | 15 +-- JFE-2.5.3/JFE/man/InformationRatio.Rd | 26 ++--- JFE-2.5.3/JFE/man/JFE.Rd | 12 +- JFE-2.5.3/JFE/man/KellyRatio.Rd | 29 +----- JFE-2.5.3/JFE/man/M2Sortino.Rd | 24 +---- JFE-2.5.3/JFE/man/MartinRatio.Rd | 24 ++--- JFE-2.5.3/JFE/man/MeanAbsoluteDeviation.Rd | 20 +--- JFE-2.5.3/JFE/man/OmegaSharpeRatio.Rd | 25 ++--- JFE-2.5.3/JFE/man/PainIndex.Rd | 20 +--- JFE-2.5.3/JFE/man/PainRatio.Rd | 12 -- JFE-2.5.3/JFE/man/ProspectRatio.Rd | 22 +--- JFE-2.5.3/JFE/man/Return.annualized.Rd | 28 ++---- JFE-2.5.3/JFE/man/SharpeRatio.Rd | 42 ++------- JFE-2.5.3/JFE/man/SharpeRatio.annualized.Rd | 35 +------ JFE-2.5.3/JFE/man/SkewnessKurtosisRatio.Rd | 23 ++--- JFE-2.5.3/JFE/man/SortinoRatio.Rd | 27 +---- JFE-2.5.3/JFE/man/TrackingError.Rd | 18 +-- JFE-2.5.3/JFE/man/TreynorRatio.Rd | 28 ++---- JFE-2.5.3/JFE/man/UlcerIndex.Rd | 22 +--- JFE-2.5.3/JFE/man/VolatilitySkewness.Rd | 22 +--- JFE-2.5.3/JFE/man/data-sets.Rd | 6 - JFE-2.5.3/JFE/man/getBIS.Rd |only JFE-2.5.3/JFE/man/getFed.Rd |only JFE-2.5.3/JFE/man/getFrench.Factors.Rd |only JFE-2.5.3/JFE/man/getFrench.Portfolios.Rd |only JFE-2.5.3/JFE/man/getTWSE.fiveSecond.Rd |only JFE-2.5.3/JFE/man/maxDrawdown.Rd | 24 ++--- JFE-2.5.3/JFE/man/riskOptimalPortfolio.Rd | 13 +- JFE-2.5.3/JFE/man/riskParityPortfolio.Rd | 10 +- JFE-2.5.3/JFE/man/table.AnnualizedReturns.Rd | 15 +-- 53 files changed, 427 insertions(+), 691 deletions(-)
Title: Generic Machine Learning Inference
Description: Generic Machine Learning Inference on heterogeneous treatment effects in randomized experiments as proposed in Chernozhukov, Demirer, Duflo and Fernández-Val (2020) <arXiv:1712.04802>. This package's workhorse is the 'mlr3' framework of Lang et al. (2019) <doi:10.21105/joss.01903>, which enables the specification of a wide variety of machine learners. The main functionality, GenericML(), runs Algorithm 1 in Chernozhukov, Demirer, Duflo and Fernández-Val (2020) <arXiv:1712.04802> for a suite of user-specified machine learners. All steps in the algorithm are customizable via setup functions. Methods for printing and plotting are available for objects returned by GenericML(). Parallel computing is supported.
Author: Max Welz [aut, cre] ,
Andreas Alfons [aut] ,
Mert Demirer [aut],
Victor Chernozhukov [aut]
Maintainer: Max Welz <welz@ese.eur.nl>
Diff between GenericML versions 0.1.1 dated 2021-12-07 and 0.2.0 dated 2022-05-06
GenericML-0.1.1/GenericML/README.md |only GenericML-0.2.0/GenericML/DESCRIPTION | 8 GenericML-0.2.0/GenericML/MD5 | 41 - GenericML-0.2.0/GenericML/NAMESPACE | 3 GenericML-0.2.0/GenericML/NEWS.md | 10 GenericML-0.2.0/GenericML/R/GenericML.R | 31 GenericML-0.2.0/GenericML/R/accessors.R | 6 GenericML-0.2.0/GenericML/R/across-learners.R | 107 ++ GenericML-0.2.0/GenericML/R/clan.R | 4 GenericML-0.2.0/GenericML/R/combine.R |only GenericML-0.2.0/GenericML/R/helpers.R | 136 ++- GenericML-0.2.0/GenericML/R/input-checks.R | 55 + GenericML-0.2.0/GenericML/R/misc.R | 42 - GenericML-0.2.0/GenericML/R/plot.R | 372 +++++++--- GenericML-0.2.0/GenericML/R/print.R | 2 GenericML-0.2.0/GenericML/R/sample-split.R |only GenericML-0.2.0/GenericML/build/partial.rdb |binary GenericML-0.2.0/GenericML/inst/CITATION | 4 GenericML-0.2.0/GenericML/man/GenericML.Rd | 14 GenericML-0.2.0/GenericML/man/GenericML_combine.Rd |only GenericML-0.2.0/GenericML/man/plot.GenericML.Rd | 9 GenericML-0.2.0/GenericML/man/setup_plot.Rd |only GenericML-0.2.0/GenericML/man/setup_stratify.Rd |only GenericML-0.2.0/GenericML/tests/testthat/test_GenericML_combine.R |only GenericML-0.2.0/GenericML/tests/testthat/test_reproducibility.R |only GenericML-0.2.0/GenericML/tests/testthat/test_stratify.R |only 26 files changed, 572 insertions(+), 272 deletions(-)
Title: Multi-Format Archive and Compression Support
Description: Bindings to 'libarchive' <http://www.libarchive.org> the
Multi-format archive and compression library. Offers R connections and
direct extraction for many archive formats including 'tar', 'ZIP',
'7-zip', 'RAR', 'CAB' and compression formats including 'gzip',
'bzip2', 'compress', 'lzma' and 'xz'.
Author: Jim Hester [aut] ,
Gabor Csardi [aut, cre],
Ondrej Holy [cph] ,
RStudio [cph, fnd]
Maintainer: Gabor Csardi <csardi.gabor@gmail.com>
Diff between archive versions 1.1.4 dated 2022-01-30 and 1.1.5 dated 2022-05-06
DESCRIPTION | 6 +++--- MD5 | 16 ++++++++-------- NEWS.md | 4 ++++ build/archive.pdf |binary configure.win | 4 ---- src/Makevars.ucrt | 19 +++++++++++++++++-- src/Makevars.win | 8 +++++--- src/archive_write_files.cpp | 9 +++++++++ tools/winlibs.R | 7 +++---- 9 files changed, 49 insertions(+), 24 deletions(-)
Title: Sparse Multi-Type Regularized Feature Modeling
Description: Implementation of the SMuRF algorithm of Devriendt et al. (2021) <doi:10.1016/j.insmatheco.2020.11.010> to fit generalized linear models (GLMs) with multiple types of predictors via regularized maximum likelihood.
Author: Tom Reynkens [aut, cre] ,
Sander Devriendt [aut],
Katrien Antonio [aut]
Maintainer: Tom Reynkens <tomreynkens@hotmail.com>
Diff between smurf versions 1.1.2 dated 2021-04-17 and 1.1.3 dated 2022-05-06
DESCRIPTION | 10 ++-- MD5 | 12 ++--- R/Penalty_weights.R | 4 - build/vignette.rds |binary inst/NEWS.Rd | 8 +++ inst/doc/smurf.html | 109 +++++++++++++++++++++++++++++++--------------------- src/RcppExports.cpp | 5 ++ 7 files changed, 92 insertions(+), 56 deletions(-)
Title: R's Interface to Maxima, Bringing Symbolic Computation into R
Description: Provides an interface to the powerful and fairly complete computer algebra system maxima.
It can be used to start and control 'Maxima' from within R by entering 'Maxima' commands.
It facilitates outputting results from 'Maxima' in 'LaTeX' and 'MathML'. 2D and 3D plots can be displayed directly. This package also registers a 'knitr'-engine
enabling 'Maxima' code chunks to be written in 'RMarkdown' documents.
Author: Eric Stemmler [aut, cre],
Kseniia Shumelchyk [aut],
Hans W. Borchers [aut]
Maintainer: Eric Stemmler <stemmler.eric@gmail.com>
Diff between rim versions 0.5.0 dated 2021-11-17 and 0.5.1 dated 2022-05-06
DESCRIPTION | 22 ++++----- MD5 | 27 +++++------ NEWS.md | 5 ++ R/engine.R | 56 +++++++++++++---------- R/engine.utils.R | 94 --------------------------------------- R/options.R | 28 ++++++++--- R/package.R | 3 - R/zzz.R | 2 README.md | 20 ++------ inst/extdata/display.mac | 32 ++++++++++--- inst/extdata/parser.lisp |only inst/extdata/plot-knitr-pdf.lisp | 32 ++++++++++++- inst/extdata/plot-knitr-png.lisp | 32 ++++++++++++- inst/extdata/test.Rmd | 2 tests/testthat/test-warnings.R | 2 15 files changed, 180 insertions(+), 177 deletions(-)
Title: Recursive Partitioning Based on Psychometric Models
Description: Recursive partitioning based on psychometric models,
employing the general MOB algorithm (from package partykit) to obtain
Bradley-Terry trees, Rasch trees, rating scale and partial credit trees, and
MPT trees, trees for 1PL, 2PL, 3PL and 4PL models and generalized partial
credit models.
Author: Achim Zeileis [aut, cre] ,
Carolin Strobl [aut],
Florian Wickelmaier [aut],
Basil Komboz [aut],
Julia Kopf [aut],
Lennart Schneider [aut] ,
David Dreifuss [aut],
Rudolf Debelak [aut]
Maintainer: Achim Zeileis <Achim.Zeileis@R-project.org>
Diff between psychotree versions 0.15-4 dated 2021-05-21 and 0.16-0 dated 2022-05-06
DESCRIPTION | 27 MD5 | 46 - NAMESPACE | 142 +-- NEWS | 12 R/gluecodes.R |only R/gpcmtree.R |only R/graphics.R | 1330 ++++++++++++++++++++------------- R/npltree.R |only build/partial.rdb |binary build/vignette.rds |binary inst/doc/raschtree.R | 16 inst/doc/raschtree.Rnw | 20 inst/doc/raschtree.pdf |binary inst/tinytest |only man/gpcmtree.Rd |only man/node_profileplot.Rd | 105 +- man/node_regionplot.Rd | 118 +- man/npltree.Rd |only tests/Examples/psychotree-Ex.Rout.save | 108 ++ tests/tinytests.R |only vignettes/raschtree.Rnw | 20 vignettes/raschtree.Rout.save | 12 22 files changed, 1235 insertions(+), 721 deletions(-)
Title: Multiple Empirical Likelihood Tests
Description: Performs multiple empirical likelihood tests for regression analysis.
Much of its functionality and syntax mimics the corresponding base R functions.
The core computational routines are implemented using the 'Eigen' C++ library
and 'RcppEigen' interface, with OpenMP for parallel computation. Additional
functions are available for multiple testing for the analysis of experimental
designs. Details of the testing procedures are given in Kim et al. (2021)
<arxiv:2112.09206>.
Author: Eunseop Kim [aut, cre],
Steven MacEachern [aut, ths],
Mario Peruggia [aut, ths]
Maintainer: Eunseop Kim <kim.7302@osu.edu>
Diff between melt versions 1.5.0 dated 2022-05-03 and 1.5.1 dated 2022-05-06
DESCRIPTION | 6 +-- MD5 | 22 +++++------ NEWS.md | 3 + R/checker.R | 8 +++- src/EL.cpp | 71 +++++++++++++++++++++++++++++++++++--- src/EL.h | 19 +++++++++- src/utils.cpp | 1 src/utils.h | 4 ++ tests/testthat/test-el_eval.R | 5 +- tests/testthat/test-el_glm.R | 1 tests/testthat/test-el_mean.R | 4 -- tests/testthat/test-el_pairwise.R | 2 - 12 files changed, 119 insertions(+), 27 deletions(-)
Title: Less Code, More Results
Description: Each function accomplishes the work of several or more standard R functions. For example, two function calls, Read() and CountAll(), read the data and generate summary statistics for all variables in the data frame, plus histograms and bar charts as appropriate. Other functions provide for descriptive statistics, a comprehensive regression analysis, analysis of variance and t-test, visualizations including the Violin/Box/Scatter plot for a numerical variable, bar chart, histogram, box plot, density curves, calibrated power curve, reading multiple data formats with the same function call, variable labels, color themes, Trellis graphics, and comprehensive summary statistics via pivot tables. Also includes a confirmatory factor analysis of multiple indicator measurement models, pedagogical routines for data simulation such as for the Central Limit Theorem, and generation and rendering of R markdown instructions for interpretative output.
Author: David Gerbing, The School of Business, Portland State University
Maintainer: David W. Gerbing <gerbing@pdx.edu>
Diff between lessR versions 4.1.8 dated 2022-04-23 and 4.1.9 dated 2022-05-06
DESCRIPTION | 8 +- MD5 | 160 +++++++++++++++++++++++----------------------- NAMESPACE | 1 NEWS | 38 ++++++++++ R/ANOVAz1.R | 4 - R/Plot.R | 3 R/Prop_test.R | 36 ++++++---- R/hst.stats.R | 2 R/plt.zcolors.R | 3 R/plt.zmain.R | 27 ++++--- R/plt.ztxt.R | 35 +++++----- R/reshape_long.R | 3 R/ss.znumeric.R | 2 R/style.R | 10 +- R/traint_test.R |only R/tt.z1group.R | 2 R/tt.z2group.R | 4 - R/zzz.R | 2 inst/doc/Customize.html | 6 - inst/doc/Extract.html | 22 +++--- inst/doc/Histogram.html | 8 +- inst/doc/Means.html | 10 +- inst/doc/Plot.html | 84 ++++++++++++------------ inst/doc/Proportions.R | 4 - inst/doc/Proportions.Rmd | 8 +- inst/doc/Proportions.html | 48 ++++++------- inst/doc/Regression.html | 10 +- inst/doc/Time.html | 13 +-- inst/doc/pivot.html | 6 - inst/doc/utilities.R | 11 +++ inst/doc/utilities.Rmd | 24 ++++++ inst/doc/utilities.html | 127 ++++++++++++++++++++---------------- man/ANOVA.Rd | 6 - man/BarChart.Rd | 4 - man/Correlation.Rd | 6 - man/Density.Rd | 4 - man/Histogram.Rd | 4 - man/LineChart.Rd | 4 - man/Logit.Rd | 4 - man/Merge.Rd | 4 - man/Model.Rd | 6 - man/Nest.Rd | 4 - man/PieChart.Rd | 4 - man/Plot.Rd | 19 ++--- man/Prop_test.Rd | 6 - man/Read.Rd | 8 +- man/Regression.Rd | 6 - man/Sort.Rd | 4 - man/Subset.Rd | 2 man/SummaryStats.Rd | 2 man/Transform.Rd | 2 man/VariableLabels.Rd | 4 - man/Write.Rd | 10 +- man/corCFA.Rd | 6 - man/corEFA.Rd | 4 - man/corProp.Rd | 4 - man/corRead.Rd | 2 man/corReflect.Rd | 4 - man/details.Rd | 2 man/extractData.Rd | 2 man/getColors.Rd | 4 - man/kurtosis.Rd | 2 man/print_out.Rd | 4 - man/print_outall.Rd | 4 - man/prob_norm.Rd | 4 - man/prob_tcut.Rd | 4 - man/prob_znorm.Rd | 4 - man/recode.Rd | 2 man/regPlot.Rd | 2 man/reshape_long.Rd | 2 man/simCImean.Rd | 2 man/simCLT.Rd | 2 man/simFlips.Rd | 2 man/simMeans.Rd | 2 man/style.Rd | 4 - man/to.Rd | 2 man/train_test.Rd |only man/ttest.Rd | 8 +- man/ttestPower.Rd | 6 - man/values.Rd | 2 vignettes/Proportions.Rmd | 8 +- vignettes/utilities.Rmd | 24 ++++++ 82 files changed, 539 insertions(+), 413 deletions(-)
Title: Transform Files to 'microtable' Object with 'microeco' Package
Description: Transform output files of some tools to the 'microtable' object of 'microtable' class in 'microeco' package. The 'microtable' class is the basic class in 'microeco' package and is necessary for the downstream microbial community data analysis.
Author: Chi Liu [aut, cre]
Maintainer: Chi Liu <liuchi0426@126.com>
Diff between file2meco versions 0.2.2 dated 2022-03-25 and 0.2.3 dated 2022-05-06
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- R/humann2meco.R | 8 ++++---- R/qiime2meco.R | 6 +----- inst/CITATION | 27 ++++++++++++++++----------- man/humann2meco.Rd | 8 ++++---- 6 files changed, 33 insertions(+), 32 deletions(-)
Title: Functions for Wayne W. Daniel's Biostatistics, Tenth Edition
Description: Functions to accompany Wayne W. Daniel's Biostatistics: A Foundation for Analysis in the Health Sciences,
Tenth Edition.
Author: Tingting Zhan [aut, cre, cph]
Maintainer: Tingting Zhan <tingtingzhan@gmail.com>
Diff between DanielBiostatistics10th versions 0.1.0 dated 2022-05-03 and 0.1.1 dated 2022-05-06
DESCRIPTION | 10 MD5 | 64 NAMESPACE | 1 NEWS.md | 3 R/DanielBiostatistics10th.R | 2 R/chp1.R | 14 R/chp12.R | 23 R/chp2.R | 59 R/chp3.R | 14 R/chp4.R | 62 R/chp5.6.7.R | 121 - R/chp7.power.R | 40 build/partial.rdb |binary inst/LDS |only inst/example |only inst/extdata/LDS_C07_HEMOGLOB_corrected.csv |only inst/extdata/LDS_C07_MANDEXT.csv | 2004 ++++++++++++++-------------- inst/extdata/LDS_C07_MANDEXT_corrected.csv |only inst/extdata/LDS_C07_PROTHROM_corrected.csv |only man/Chp1.Rd | 2 man/Chp12.Rd | 142 + man/Chp2.Rd | 3 man/Chp3.Rd | 3 man/Chp4.Rd | 5 man/Chp567.Rd | 2 man/Chp7power.Rd | 2 26 files changed, 1216 insertions(+), 1360 deletions(-)
More information about DanielBiostatistics10th at CRAN
Permanent link
Title: Transfer Function and ARIMA Models
Description: Building customized transfer function and ARIMA models with multiple operators and parameter restrictions. Functions for model identification, model estimation (exact or conditional maximum likelihood), model diagnostic checking, automatic outlier detection, calendar effects, forecasting and seasonal adjustment. See Bell and Hillmer (1983) <doi:10.1080/01621459.1983.10478005>, Box, Jenkins, Reinsel and Ljung <ISBN:978-1-118-67502-1>, Box, Pierce and Newbold (1987) <doi:10.1080/01621459.1987.10478430>, Box and Tiao (1975) <doi:10.1080/01621459.1975.10480264>, Chen and Liu (1993) <doi:10.1080/01621459.1993.10594321>.
Author: Jose L. Gallego [aut, cre]
Maintainer: Jose L. Gallego <jose.gallego@unican.es>
Diff between tfarima versions 0.2.1 dated 2021-05-29 and 0.3.1 dated 2022-05-06
DESCRIPTION | 10 MD5 | 79 ++-- NAMESPACE | 23 + R/RcppExports.R | 8 R/data.R | 21 + R/detvar.R | 631 +++++++++++++++++++++++--------------- R/lagpol.R | 9 R/stsm.R |only R/tf.R | 16 R/tfarima-package.R | 98 ++--- R/tfm.R | 535 ++++++++++++++++++++++---------- R/um.R | 409 +++++++++++++++--------- R/utils.R | 177 ++++++---- data/Wtelephone.rda |only inst/doc/tfarima.Rnw | 12 inst/doc/tfarima.pdf |binary man/CalendarVar.Rd | 27 + man/S.Rd |only man/Wtelephone.Rd |only man/autocov.Rd | 19 - man/bsm.Rd |only man/calendar.Rd | 80 +++- man/coef.tfm.Rd |only man/coef.um.Rd |only man/easter.Rd | 16 man/fit.stsm.Rd |only man/fit2autocov.Rd |only man/intervention.Rd |only man/outliers.Rd | 22 - man/rform.Rd |only man/sdummies.Rd |only man/setinputs.Rd | 30 + man/sform.Rd |only man/sim.Rd | 17 - man/sincos.Rd |only man/stsm.Rd |only man/tfest.Rd | 7 man/tfm.Rd | 8 man/tsvalue.Rd |only man/um.Rd | 6 man/varsel.Rd | 9 src/RcppExports.cpp | 31 + src/decomp.cpp | 6 src/outliers.cpp | 160 +++------ src/outliers.h | 3 src/stsm.cpp |only src/stsm.h |only vignettes/tfarima-concordance.tex |only vignettes/tfarima.Rnw | 12 vignettes/tfarima0.pdf |binary 50 files changed, 1576 insertions(+), 905 deletions(-)
Title: Testing Steepness of Dominance Hierarchies
Description: The steepness package computes steepness as a
property of dominance hierarchies. Steepness is defined as the
absolute slope of the straight line fitted to the normalized
David's scores. The normalized David's scores can be obtained
on the basis of dyadic dominance indices corrected for chance
or by means of proportions of wins. Given an observed
sociomatrix, it computes hierarchy's steepness and estimates
statistical significance by means of a randomization test.
Author: David Leiva <dleivaur@ub.edu> & Han de Vries
<J.deVries1@uu.nl>.
Maintainer: David Leiva <dleivaur@ub.edu>
Diff between steepness versions 0.2-2 dated 2014-10-01 and 0.3-0 dated 2022-05-06
DESCRIPTION | 12 +- MD5 | 43 +++++----- NAMESPACE | 8 + NEWS | 70 ++++++++-------- R/getDS.R | 66 +++++++-------- R/getDij.R | 32 +++---- R/getNormDS.R | 68 +++++++-------- R/getOrderedMatrix.R | 74 ++++++++--------- R/getPij.R | 28 +++--- R/getStp.R | 72 ++++++++-------- R/getwl.R | 64 +++++++------- R/plot.steeptest.R | 62 +++++++------- R/steeptest.R | 188 ++++++++++++++++++++++---------------------- R/zzz.R | 6 - man/getDS.Rd | 130 +++++++++++++++--------------- man/getDij.Rd | 136 +++++++++++++++---------------- man/getNormDS.Rd | 130 +++++++++++++++--------------- man/getOrderedMatrix.Rd | 142 ++++++++++++++++----------------- man/getPij.Rd | 136 +++++++++++++++---------------- man/getStp.Rd | 122 ++++++++++++++-------------- man/getwl.Rd | 136 +++++++++++++++---------------- man/steeptest.Rd | 162 ++++++++++++++++++------------------- src/registerDynamicSymbol.c |only 23 files changed, 950 insertions(+), 937 deletions(-)
Title: Utility Functions for 'spatstat'
Description: Contains utility functions for the 'spatstat' family of packages
which may also be useful for other purposes.
Author: Adrian Baddeley [aut, cre] ,
Rolf Turner [aut] ,
Ege Rubak [aut]
Maintainer: Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>
Diff between spatstat.utils versions 2.3-0 dated 2021-12-12 and 2.3-1 dated 2022-05-06
DESCRIPTION | 8 +- MD5 | 27 ++++---- NAMESPACE | 1 NEWS | 26 ++++++++ R/primefactors.R | 5 + R/utilarg.R | 131 ++++++++++++++++++++++++----------------- R/utilseq.R | 20 +++--- R/xysegment.R | 10 +-- inst/doc/packagesizes.txt | 1 man/check.1.integer.Rd | 26 ++++---- man/check.nmatrix.Rd | 7 +- man/fastFindInterval.Rd |only man/geomseq.Rd |only man/macros/defns.Rd | 9 ++ man/orifnull.Rd |only man/spatstat.utils-internal.Rd | 13 +--- 16 files changed, 175 insertions(+), 109 deletions(-)
More information about spatstat.utils at CRAN
Permanent link
Title: Multidimensional Scaling
Description: Implements the following approaches for multidimensional scaling (MDS) based on stress minimization using majorization (smacof): ratio/interval/ordinal/spline MDS on symmetric dissimilarity matrices, MDS with external constraints on the configuration, individual differences scaling (idioscal, indscal), MDS with spherical restrictions, and ratio/interval/ordinal/spline unfolding (circular restrictions, row-conditional). Various tools and extensions like jackknife MDS, bootstrap MDS, permutation tests, MDS biplots, gravity models, unidimensional scaling, drift vectors (asymmetric MDS), classical scaling, and Procrustes are implemented as well.
Author: Patrick Mair [aut, cre],
Jan De Leeuw [aut],
Patrick J. F. Groenen [aut],
Ingwer Borg [ctb]
Maintainer: Patrick Mair <mair@fas.harvard.edu>
Diff between smacof versions 2.1-3 dated 2021-07-20 and 2.1-5 dated 2022-05-06
DESCRIPTION | 8 ++--- MD5 | 60 ++++++++++++++++++++++------------------ R/Procrustes.R | 3 +- R/print.procr.R | 1 R/sim2diss.R | 12 ++++---- R/smacofSym.R | 8 ++++- build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 13 +++++--- inst/NEWS.Rd | 17 +++++++++++ inst/doc/mdsnutshell.R |only inst/doc/mdsnutshell.Rmd |only inst/doc/mdsnutshell.html |only inst/doc/smacof.pdf |binary inst/doc/unfoldingnutshell.R |only inst/doc/unfoldingnutshell.Rmd |only inst/doc/unfoldingnutshell.html |only man/Procrustes.Rd | 9 +++++- man/biplotmds.smacof.Rd | 4 ++ man/bootmds.smacofB.Rd | 5 ++- man/confEllipse.smacofID.Rd | 3 +- man/jackknife.smacofB.Rd | 6 +++- man/permtest.smacof.Rd | 6 ++++ man/randomstress.Rd | 7 ++++ man/sim2diss.Rd | 6 ++++ man/smacofConstraint.rd | 6 ++-- man/smacofIndDiff.Rd | 2 - man/smacofRect.Rd | 8 ++++- man/smacofSphere.Rd | 7 +++- man/smacofSym.Rd | 33 ++++++++++++++-------- man/torgerson.Rd | 3 +- man/vmu.Rd | 2 + vignettes/mdsnutshell.Rmd |only vignettes/smacof.bib | 3 -- vignettes/unfoldingnutshell.Rmd |only 35 files changed, 160 insertions(+), 72 deletions(-)
Title: A Bayesian Tool for Approximate Real-Time Estimation of the
Reproduction Number
Description: Estimation of the instantaneous reproduction number with
Laplacian-P-splines following the methodology of Gressani et al.(2021)
<doi:10.1101/2021.12.02.21267189>. The negative Binomial
distribution is used to model the time series of case counts. Two methods are
available for inference : (1) a sampling-free approach based on a maximum a
posteriori calibration of the hyperparameter vector and (2) a fully stochastic
approach with a Metropolis-within-Gibbs algorithm and Langevin diffusions for
efficient sampling of the posterior distribution.
Author: Oswaldo Gressani [aut, cre]
Maintainer: Oswaldo Gressani <oswaldo_gressani@hotmail.fr>
Diff between EpiLPS versions 1.0.2 dated 2022-01-03 and 1.0.5 dated 2022-05-06
DESCRIPTION | 8 +- MD5 | 24 +++--- NEWS.md | 18 ++--- R/S3_epilps_plot.R | 40 ++++++----- R/epilps.R | 115 +++++++++++++++++++++----------- R/episim.R | 77 +++++++++++++++------ R/perfcheck.R | 187 ++++++++++++++++++++++++++++++++++++++++++----------- README.md | 172 ++++++++++++++++++++++++++++-------------------- inst/CITATION | 4 - man/epilps.Rd | 27 ++++--- man/episim.Rd | 31 +++++--- man/perfcheck.Rd | 49 +++++++++++-- man/plot.epilps.Rd | 21 +++-- 13 files changed, 518 insertions(+), 255 deletions(-)
Title: Modules to Import and Manipulate Data in 'Shiny'
Description: 'Shiny' modules to import data into an application or 'addin'
from various sources, and to manipulate them after that.
Author: Victor Perrier [aut, cre, cph],
Fanny Meyer [aut],
Zauad Shahreer Abeer [aut],
Eduard Szoecs [ctb]
Maintainer: Victor Perrier <victor.perrier@dreamrs.fr>
Diff between datamods versions 1.3.0 dated 2022-04-25 and 1.3.2 dated 2022-05-06
DESCRIPTION | 11 MD5 | 116 +-- NAMESPACE | 240 +++--- NEWS.md | 135 ++- R/filter-data.R | 1140 ++++++++++++++++----------------- R/i18n.R | 208 +++--- R/import-file.R | 632 +++++++++--------- R/import-globalenv.R | 696 ++++++++++---------- R/import-googlesheets.R | 400 +++++------ R/import-modal.R | 829 +++++++++++------------ R/import-url.R | 316 ++++----- R/show_data.R | 186 ++--- R/update-variables.R | 9 R/utils-shiny.R | 360 +++++----- R/utils.R | 218 +++--- R/zzz.R | 4 README.md | 250 +++---- inst/doc/i18n.html | 14 inst/extdata/mtcars.csv | 66 - inst/extdata/mtcars.json | 2 inst/i18n/al.csv | 124 +-- inst/i18n/cn.csv | 124 +-- inst/i18n/de.csv | 124 +-- inst/i18n/es.csv | 274 +++---- man/figures/i18n/al.svg | 10 man/figures/i18n/br.svg | 90 +- man/figures/i18n/cn.svg | 22 man/figures/i18n/es.svg | 1088 +++++++++++++++---------------- man/figures/i18n/fr.svg | 14 man/figures/i18n/gb.svg | 14 man/figures/i18n/mk.svg | 10 man/figures/i18n/pt.svg | 114 +-- man/filter-data.Rd | 388 +++++------ man/get_data_packages.Rd | 42 - man/i18n.Rd | 120 +-- man/import-copypaste.Rd | 198 ++--- man/import-file.Rd | 266 +++---- man/import-globalenv.Rd | 236 +++--- man/import-googlesheets.Rd | 188 ++--- man/import-modal.Rd | 212 +++--- man/import-url.Rd | 188 ++--- man/list_pkg_data.Rd | 42 - man/show_data.Rd | 154 ++-- man/update-variables.Rd | 178 ++--- man/validation.Rd | 294 ++++---- tests/testthat.R | 8 tests/testthat/test-filter-data.R | 284 ++++---- tests/testthat/test-i18n.R | 162 ++-- tests/testthat/test-import-modal.R | 32 tests/testthat/test-import-url.R | 92 +- tests/testthat/test-update-variables.R | 354 +++++----- vignettes/figures/i18n/al.svg | 10 vignettes/figures/i18n/br.svg | 90 +- vignettes/figures/i18n/cn.svg | 22 vignettes/figures/i18n/es.svg | 1088 +++++++++++++++---------------- vignettes/figures/i18n/fr.svg | 14 vignettes/figures/i18n/gb.svg | 14 vignettes/figures/i18n/mk.svg | 10 vignettes/figures/i18n/pt.svg | 114 +-- 59 files changed, 6328 insertions(+), 6312 deletions(-)
Title: Spatial Predictive Modeling
Description: Introduction to some novel accurate hybrid methods of geostatistical and machine learning methods for spatial predictive modelling. It contains two commonly used geostatistical methods, two machine learning methods, four hybrid methods and two averaging methods. For each method, two functions are provided. One function is for assessing the predictive errors and accuracy of the method based on cross-validation. The other one is for generating spatial predictions using the method. For details please see: Li, J., Potter, A., Huang, Z., Daniell, J. J. and Heap, A. (2010) <https:www.ga.gov.au/metadata-gateway/metadata/record/gcat_71407>
Li, J., Heap, A. D., Potter, A., Huang, Z. and Daniell, J. (2011) <doi:10.1016/j.csr.2011.05.015>
Li, J., Heap, A. D., Potter, A. and Daniell, J. (2011) <doi:10.1016/j.envsoft.2011.07.004>
Li, J., Potter, A., Huang, Z. and Heap, A. (2012) <https:www.ga.gov.au/metadata-gateway/metadata/record/74030>.
Author: Jin Li [aut, cre]
Maintainer: Jin Li <jinli68@gmail.com>
Diff between spm versions 1.2.1 dated 2021-09-06 and 1.2.2 dated 2022-05-06
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/gbmcv.R | 6 +++++- inst/doc/spm.html | 4 ++-- 4 files changed, 14 insertions(+), 10 deletions(-)
Title: Simulation of Event Histories for Multi-State Models
Description: Simulation of event histories with possibly non-linear baseline hazard rate functions, non-linear (time-varying) covariate effect functions, and dependencies on the past of the history. Random generation of event histories is performed using inversion sampling on the cumulative all-cause hazard rate functions.
Author: Holger Reulen
Maintainer: Holger Reulen <hreulen@uni-goettingen.de>
Diff between simMSM versions 1.1.41 dated 2015-03-03 and 1.1.42 dated 2022-05-06
DESCRIPTION | 8 - MD5 | 18 +-- NAMESPACE | 4 man/mplskeleton.Rd | 50 +++++---- man/plotbe.Rd | 51 +++++---- man/plotcph.Rd | 48 +++++---- man/plotnae.Rd | 51 +++++---- man/pmeskeleton.Rd | 51 +++++---- man/simeventhistories.Rd | 247 +++++++++++++++++++++++++---------------------- man/tolongformat.Rd | 47 +++++--- 10 files changed, 325 insertions(+), 250 deletions(-)
Title: Ace Editor Bindings for Shiny
Description: Ace editor bindings to enable a rich text editing environment
within Shiny.
Author: Vincent Nijs [aut, cre],
Forest Fang [aut],
Trestle Technology, LLC [aut],
Jeff Allen [aut],
Institut de Radioprotection et de Surete Nucleaire [cph],
Ajax.org B.V. [ctb, cph]
Maintainer: Vincent Nijs <radiant@rady.ucsd.edu>
Diff between shinyAce versions 0.4.1 dated 2019-09-24 and 0.4.2 dated 2022-05-06
shinyAce-0.4.1/shinyAce/inst/examples/03-knitr/figure |only shinyAce-0.4.1/shinyAce/inst/examples/05-hotkeys/rsconnect |only shinyAce-0.4.1/shinyAce/inst/examples/06-autocomplete/rsconnect |only shinyAce-0.4.1/shinyAce/inst/examples/08-resize/rsconnect |only shinyAce-0.4.1/shinyAce/inst/examples/09-selectionId/rsconnect |only shinyAce-0.4.2/shinyAce/DESCRIPTION | 10 +- shinyAce-0.4.2/shinyAce/MD5 | 47 ++++------ shinyAce-0.4.2/shinyAce/NEWS.md | 5 + shinyAce-0.4.2/shinyAce/R/ace-editor.R | 3 shinyAce-0.4.2/shinyAce/R/update-ace-editor.R | 6 + shinyAce-0.4.2/shinyAce/R/utils.R | 2 shinyAce-0.4.2/shinyAce/README.md | 2 shinyAce-0.4.2/shinyAce/inst/examples/01-basic/server.R | 3 shinyAce-0.4.2/shinyAce/inst/examples/01-basic/ui.R | 1 shinyAce-0.4.2/shinyAce/inst/examples/07-autocomplete-combine/server.R | 16 --- shinyAce-0.4.2/shinyAce/inst/www/ace/mode-pml.js |only shinyAce-0.4.2/shinyAce/inst/www/shinyAce.js | 12 ++ shinyAce-0.4.2/shinyAce/man/aceEditor.Rd | 42 ++++++-- shinyAce-0.4.2/shinyAce/man/dot-fname_regex.Rd | 4 shinyAce-0.4.2/shinyAce/man/dot-tools.Rd | 4 shinyAce-0.4.2/shinyAce/man/dot-utils.Rd | 4 shinyAce-0.4.2/shinyAce/man/get_arg_help.Rd | 9 + shinyAce-0.4.2/shinyAce/man/get_desc_help.Rd | 9 + shinyAce-0.4.2/shinyAce/man/get_help_file.Rd | 21 ++-- shinyAce-0.4.2/shinyAce/man/get_usage_help.Rd | 9 + shinyAce-0.4.2/shinyAce/man/rd_2_html.Rd | 2 shinyAce-0.4.2/shinyAce/man/updateAceEditor.Rd | 26 ++++- 27 files changed, 148 insertions(+), 89 deletions(-)
Title: Stock Assessment Methods Toolkit
Description: Simulation tools for closed-loop simulation are provided for the 'MSEtool' operating model to inform data-rich fisheries.
'SAMtool' provides a conditioning model, assessment models of varying complexity with standardized reporting,
model-based management procedures, and diagnostic tools for evaluating assessments inside closed-loop simulation.
Author: Quang Huynh [aut, cre],
Tom Carruthers [aut],
Adrian Hordyk [aut]
Maintainer: Quang Huynh <quang@bluematterscience.com>
Diff between SAMtool versions 1.3.0 dated 2022-04-08 and 1.3.1 dated 2022-05-06
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NEWS.md | 3 +++ R/RCM_rmd.R | 6 +++--- build/partial.rdb |binary 5 files changed, 14 insertions(+), 11 deletions(-)
Title: Pandoc Filters for R
Description: The document converter 'pandoc' <https://pandoc.org/> is widely used
in the R community. One feature of 'pandoc' is that it can produce and consume
JSON-formatted abstract syntax trees (AST). This allows to transform a given
source document into JSON-formatted AST, alter it by so called filters and pass
the altered JSON-formatted AST back to 'pandoc'. This package provides functions
which allow to write such filters in native R code.
Although this package is inspired by the Python package 'pandocfilters'
<https://github.com/jgm/pandocfilters/>, it provides additional convenience functions which make it simple to use the 'pandocfilters' package as a
report generator. Since 'pandocfilters' inherits most of it's functionality
from 'pandoc' it can create documents in many formats
(for more information see <https://pandoc.org/>) but is also bound to the same
limitations as 'pandoc'.
Author: Florian Schwendinger [aut, cre],
Kurt Hornik [aut],
Andrie de Vries [ctb]
Maintainer: Florian Schwendinger <FlorianSchwendinger@gmx.at>
Diff between pandocfilters versions 0.1-4 dated 2019-11-26 and 0.1-5 dated 2022-05-06
DESCRIPTION | 14 +++---- MD5 | 27 +++++++------ R/pandocfilters.R | 86 ++++++++++++++++++++++---------------------- build/vignette.rds |binary inst/doc/pandocfilters.Rnw | 4 +- inst/doc/pandocfilters.pdf |binary man/Citation.Rd | 10 ++++- man/Code.Rd | 3 - man/CodeBlock.Rd | 2 - man/DefinitionList.Rd | 2 - man/ListAttributes.Rd | 7 ++- man/Table.Rd | 9 +++- man/document.Rd | 84 +++++++++++++++++++++--------------------- vignettes/pandocfilters.Rnw | 4 +- vignettes/pandocfilters.tex |only 15 files changed, 133 insertions(+), 119 deletions(-)
Title: Morphological Analysis for Japanese
Description: Supports morphological analysis for Japanese by using 'MeCab'.
Can input data.frame and obtain all results of 'MeCab' and row number of
original data.frame as a text id.
Author: Toshikazu Matsumura [aut, cre]
Maintainer: Toshikazu Matsumura <matutosi@gmail.com>
Diff between moranajp versions 0.9.3 dated 2022-03-30 and 0.9.4 dated 2022-05-06
DESCRIPTION | 6 +++--- MD5 | 12 +++++++----- NEWS.md | 28 ++++++++++++++++++++++------ R/make_group.R |only R/moranajp.R | 7 +++++-- inst/doc/moranajp.html | 8 ++++---- man/make_groups.Rd |only tests/testthat/test-moranajp.R | 5 +++-- 8 files changed, 44 insertions(+), 22 deletions(-)
Title: Boosting Multistate Models
Description: Contains infrastructure for using mboost::gamboost() in order to estimate multistate models.
Author: Holger Reulen
Maintainer: Holger Reulen <hreulen@uni-goettingen.de>
Diff between gamboostMSM versions 1.1.87 dated 2014-12-02 and 1.1.88 dated 2022-05-06
DESCRIPTION | 12 +++++----- MD5 | 14 ++++++------ NAMESPACE | 5 +++- man/buildrisksets.Rd | 39 ++++++++++++++++----------------- man/degreesoffreedom.Rd | 45 +++++++++++++++++++------------------- man/gamboostMSM-package.Rd | 52 +++++++++++++++++++++++++++++---------------- man/meancentering.Rd | 32 +++++++++++++-------------- man/plotcvriskMSM.Rd | 27 ++++++++++++----------- 8 files changed, 122 insertions(+), 104 deletions(-)